xref: /petsc/include/petscdmplex.h (revision 4302210d98c281cf4e8bc0fee406cf222e373a4c) 
1 /*
2   DMPlex, for parallel unstructured distributed mesh problems.
3 */
4 #if !defined(PETSCDMPLEX_H)
5 #define PETSCDMPLEX_H
6 
7 #include <petscsection.h>
8 #include <petscpartitioner.h>
9 #include <petscdm.h>
10 #include <petscdmplextypes.h>
11 #include <petscdt.h>
12 #include <petscfe.h>
13 #include <petscfv.h>
14 #include <petscsftypes.h>
15 #include <petscdmfield.h>
16 
17 PETSC_EXTERN PetscErrorCode PetscPartitionerDMPlexPartition(PetscPartitioner, DM, PetscSection, PetscSection, IS *);
18 
19 PETSC_EXTERN PetscErrorCode DMPlexBuildFromCellList(DM, PetscInt, PetscInt, PetscInt, const PetscInt[]);
20 PETSC_EXTERN PetscErrorCode DMPlexBuildFromCellListParallel(DM, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscSF *);
21 PETSC_EXTERN PetscErrorCode DMPlexBuildCoordinatesFromCellList(DM, PetscInt, const PetscReal[]);
22 PETSC_EXTERN PetscErrorCode DMPlexBuildCoordinatesFromCellListParallel(DM, PetscInt, PetscSF, const PetscReal[]);
23 
24 PETSC_EXTERN PetscErrorCode DMPlexCreate(MPI_Comm, DM*);
25 PETSC_EXTERN PetscErrorCode DMPlexCreateCohesiveSubmesh(DM, PetscBool, const char [], PetscInt, DM *);
26 PETSC_EXTERN PetscErrorCode DMPlexCreateFromCellListPetsc(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscBool, const PetscInt[], PetscInt, const PetscReal[], DM*);
27 PETSC_EXTERN PETSC_DEPRECATED_FUNCTION("Use DMPlexCreateFromCellListPetsc() (since version 3.14)") PetscErrorCode DMPlexCreateFromCellList(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscBool, const int[], PetscInt, const double[], DM*);
28 PETSC_EXTERN PetscErrorCode DMPlexCreateFromCellListParallelPetsc(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, PetscBool, const PetscInt[], PetscInt, const PetscReal[], PetscSF *, DM *);
29 PETSC_EXTERN PETSC_DEPRECATED_FUNCTION("Use DMPlexCreateFromCellListParallelPetsc() (since version 3.14)") PetscErrorCode DMPlexCreateFromCellListParallel(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscBool, const int[], PetscInt, const PetscReal[], PetscSF *, DM *);
30 PETSC_EXTERN PetscErrorCode DMPlexCreateFromDAG(DM, PetscInt, const PetscInt [], const PetscInt [], const PetscInt [], const PetscInt [], const PetscScalar []);
31 PETSC_EXTERN PetscErrorCode DMPlexCreateReferenceCell(MPI_Comm, PetscInt, PetscBool, DM*);
32 PETSC_EXTERN PetscErrorCode DMPlexCreateReferenceCellByType(MPI_Comm, DMPolytopeType, DM *);
33 PETSC_EXTERN PetscErrorCode DMPlexSetOptionsPrefix(DM, const char []);
34 PETSC_EXTERN PetscErrorCode DMPlexGetChart(DM, PetscInt *, PetscInt *);
35 PETSC_EXTERN PetscErrorCode DMPlexSetChart(DM, PetscInt, PetscInt);
36 PETSC_EXTERN PetscErrorCode DMPlexGetConeSize(DM, PetscInt, PetscInt *);
37 PETSC_EXTERN PetscErrorCode DMPlexSetConeSize(DM, PetscInt, PetscInt);
38 PETSC_EXTERN PetscErrorCode DMPlexAddConeSize(DM, PetscInt, PetscInt);
39 PETSC_EXTERN PetscErrorCode DMPlexGetCone(DM, PetscInt, const PetscInt *[]);
40 PETSC_EXTERN PetscErrorCode DMPlexGetConeTuple(DM, IS, PetscSection *, IS *);
41 PETSC_EXTERN PetscErrorCode DMPlexGetConeRecursive(DM, IS, PetscInt *, IS *[], PetscSection *[]);
42 PETSC_EXTERN PetscErrorCode DMPlexRestoreConeRecursive(DM, IS, PetscInt *, IS *[], PetscSection *[]);
43 PETSC_EXTERN PetscErrorCode DMPlexGetConeRecursiveVertices(DM, IS, IS *);
44 PETSC_EXTERN PetscErrorCode DMPlexSetCone(DM, PetscInt, const PetscInt[]);
45 PETSC_EXTERN PetscErrorCode DMPlexInsertCone(DM, PetscInt, PetscInt, PetscInt);
46 PETSC_EXTERN PetscErrorCode DMPlexInsertConeOrientation(DM, PetscInt, PetscInt, PetscInt);
47 PETSC_EXTERN PetscErrorCode DMPlexGetConeOrientation(DM, PetscInt, const PetscInt *[]);
48 PETSC_EXTERN PetscErrorCode DMPlexSetConeOrientation(DM, PetscInt, const PetscInt[]);
49 PETSC_EXTERN PetscErrorCode DMPlexGetSupportSize(DM, PetscInt, PetscInt *);
50 PETSC_EXTERN PetscErrorCode DMPlexSetSupportSize(DM, PetscInt, PetscInt);
51 PETSC_EXTERN PetscErrorCode DMPlexGetSupport(DM, PetscInt, const PetscInt *[]);
52 PETSC_EXTERN PetscErrorCode DMPlexSetSupport(DM, PetscInt, const PetscInt[]);
53 PETSC_EXTERN PetscErrorCode DMPlexInsertSupport(DM, PetscInt, PetscInt, PetscInt);
54 PETSC_EXTERN PetscErrorCode DMPlexGetConeSection(DM, PetscSection *);
55 PETSC_EXTERN PetscErrorCode DMPlexGetSupportSection(DM, PetscSection *);
56 PETSC_EXTERN PetscErrorCode DMPlexGetCones(DM, PetscInt *[]);
57 PETSC_EXTERN PetscErrorCode DMPlexGetConeOrientations(DM, PetscInt *[]);
58 PETSC_EXTERN PetscErrorCode DMPlexGetMaxSizes(DM, PetscInt *, PetscInt *);
59 PETSC_EXTERN PetscErrorCode DMPlexSymmetrize(DM);
60 PETSC_EXTERN PetscErrorCode DMPlexStratify(DM);
61 PETSC_EXTERN PetscErrorCode DMPlexEqual(DM,DM,PetscBool*);
62 PETSC_EXTERN PetscErrorCode DMPlexReverseCell(DM, PetscInt);
63 PETSC_EXTERN PetscErrorCode DMPlexOrientCell(DM,PetscInt,PetscInt,const PetscInt[]);
64 PETSC_EXTERN PetscErrorCode DMPlexCompareOrientations(DM, PetscInt, PetscInt, const PetscInt [], PetscInt *, PetscBool *);
65 PETSC_EXTERN PetscErrorCode DMPlexOrient(DM);
66 PETSC_EXTERN PetscErrorCode DMPlexPreallocateOperator(DM, PetscInt, PetscInt[], PetscInt[], PetscInt[], PetscInt[], Mat, PetscBool);
67 PETSC_EXTERN PetscErrorCode DMPlexGetPointLocal(DM,PetscInt,PetscInt*,PetscInt*);
68 PETSC_EXTERN PetscErrorCode DMPlexPointLocalRead(DM,PetscInt,const PetscScalar*,void*);
69 PETSC_EXTERN PetscErrorCode DMPlexPointLocalRef(DM,PetscInt,PetscScalar*,void*);
70 PETSC_EXTERN PetscErrorCode DMPlexGetPointLocalField(DM,PetscInt,PetscInt,PetscInt*,PetscInt*);
71 PETSC_EXTERN PetscErrorCode DMPlexPointLocalFieldRef(DM,PetscInt,PetscInt,PetscScalar*,void*);
72 PETSC_EXTERN PetscErrorCode DMPlexPointLocalFieldRead(DM,PetscInt,PetscInt,const PetscScalar*,void*);
73 PETSC_EXTERN PetscErrorCode DMPlexGetPointGlobal(DM,PetscInt,PetscInt*,PetscInt*);
74 PETSC_EXTERN PetscErrorCode DMPlexPointGlobalRead(DM,PetscInt,const PetscScalar*,const void*);
75 PETSC_EXTERN PetscErrorCode DMPlexPointGlobalRef(DM,PetscInt,PetscScalar*,void*);
76 PETSC_EXTERN PetscErrorCode DMPlexGetPointGlobalField(DM,PetscInt,PetscInt,PetscInt*,PetscInt*);
77 PETSC_EXTERN PetscErrorCode DMPlexPointGlobalFieldRef(DM,PetscInt,PetscInt,PetscScalar*,void*);
78 PETSC_EXTERN PetscErrorCode DMPlexPointGlobalFieldRead(DM,PetscInt,PetscInt,const PetscScalar*, void*);
79 
80 /* Topological interpolation */
81 PETSC_EXTERN const char * const DMPlexInterpolatedFlags[];
82 /*E
83    DMPlexInterpolatedFlag - Describes level of topological interpolatedness.
84      It is a local or collective property depending on whether it is returned by DMPlexIsInterpolated() or DMPlexIsInterpolatedCollective().
85 
86 $  DMPLEX_INTERPOLATED_INVALID - Uninitialized value (internal use only; never returned by DMPlexIsInterpolated() or DMPlexIsInterpolatedCollective())
87 $  DMPLEX_INTERPOLATED_NONE    - Mesh is not interpolated
88 $  DMPLEX_INTERPOLATED_PARTIAL - Mesh is partially interpolated. This can e.g. mean DMPlex with cells, faces and vertices but no edges represented, or a mesh with mixed cones (see DMPlexStratify() for an example)
89 $  DMPLEX_INTERPOLATED_MIXED   - Can be returned only by DMPlexIsInterpolatedCollective(), meaning that DMPlexIsInterpolated() returns different interpolatedness on different ranks
90 $  DMPLEX_INTERPOLATED_FULL    - Mesh is fully interpolated
91 
92    Level: intermediate
93 
94    Developer Note:
95    Any additions/changes here MUST also be made in include/petsc/finclude/petscdmplex.h and src/dm/f90-mod/petscdmplex.h
96 
97 .seealso: DMPlexIsInterpolated(), DMPlexIsInterpolatedCollective(), DMPlexInterpolate(), DMPlexUninterpolate()
98 E*/
99 typedef enum {
100   DMPLEX_INTERPOLATED_INVALID = -1,
101   DMPLEX_INTERPOLATED_NONE = 0,
102   DMPLEX_INTERPOLATED_PARTIAL,
103   DMPLEX_INTERPOLATED_MIXED,
104   DMPLEX_INTERPOLATED_FULL
105 } DMPlexInterpolatedFlag;
106 PETSC_EXTERN PetscErrorCode DMPlexInterpolate(DM, DM *);
107 PETSC_EXTERN PetscErrorCode DMPlexUninterpolate(DM, DM *);
108 PETSC_EXTERN PetscErrorCode DMPlexInterpolatePointSF(DM, PetscSF);
109 PETSC_EXTERN PetscErrorCode DMPlexIsInterpolated(DM, DMPlexInterpolatedFlag *);
110 PETSC_EXTERN PetscErrorCode DMPlexIsInterpolatedCollective(DM, DMPlexInterpolatedFlag *);
111 
112 PETSC_EXTERN PetscErrorCode DMPlexFilter(DM, DMLabel, PetscInt, DM *);
113 PETSC_EXTERN PetscErrorCode DMPlexGetCellNumbering(DM, IS *);
114 PETSC_EXTERN PetscErrorCode DMPlexGetVertexNumbering(DM, IS *);
115 PETSC_EXTERN PetscErrorCode DMPlexCreatePointNumbering(DM, IS *);
116 PETSC_EXTERN PetscErrorCode DMPlexCreateRankField(DM, Vec *);
117 PETSC_EXTERN PetscErrorCode DMPlexCreateLabelField(DM, DMLabel, Vec *);
118 
119 PETSC_EXTERN PetscErrorCode DMPlexGetDepth(DM, PetscInt *);
120 PETSC_EXTERN PetscErrorCode DMPlexGetDepthLabel(DM, DMLabel *);
121 PETSC_EXTERN PetscErrorCode DMPlexGetDepthStratum(DM, PetscInt, PetscInt *, PetscInt *);
122 PETSC_EXTERN PetscErrorCode DMPlexGetHeightStratum(DM, PetscInt, PetscInt *, PetscInt *);
123 PETSC_EXTERN PetscErrorCode DMPlexGetPointDepth(DM, PetscInt, PetscInt *);
124 PETSC_EXTERN PetscErrorCode DMPlexGetPointHeight(DM, PetscInt, PetscInt *);
125 PETSC_EXTERN PetscErrorCode DMPlexGetCellTypeLabel(DM, DMLabel *);
126 PETSC_EXTERN PetscErrorCode DMPlexGetCellType(DM, PetscInt, DMPolytopeType *);
127 PETSC_EXTERN PetscErrorCode DMPlexSetCellType(DM, PetscInt, DMPolytopeType);
128 PETSC_EXTERN PetscErrorCode DMPlexComputeCellTypes(DM);
129 PETSC_EXTERN PetscErrorCode DMPlexInvertCell(DMPolytopeType, PetscInt[]);
130 PETSC_EXTERN PetscErrorCode DMPlexReorderCell(DM, PetscInt, PetscInt[]);
131 
132 
133 /* Topological Operations */
134 PETSC_EXTERN PetscErrorCode DMPlexGetMeet(DM, PetscInt, const PetscInt [], PetscInt *, const PetscInt **);
135 PETSC_EXTERN PetscErrorCode DMPlexGetFullMeet(DM, PetscInt, const PetscInt [], PetscInt *, const PetscInt **);
136 PETSC_EXTERN PetscErrorCode DMPlexRestoreMeet(DM, PetscInt, const PetscInt [], PetscInt *, const PetscInt **);
137 PETSC_EXTERN PetscErrorCode DMPlexGetJoin(DM, PetscInt, const PetscInt [], PetscInt *, const PetscInt **);
138 PETSC_EXTERN PetscErrorCode DMPlexGetFullJoin(DM, PetscInt, const PetscInt [], PetscInt *, const PetscInt **);
139 PETSC_EXTERN PetscErrorCode DMPlexRestoreJoin(DM, PetscInt, const PetscInt [], PetscInt *, const PetscInt **);
140 PETSC_EXTERN PetscErrorCode DMPlexGetTransitiveClosure(DM, PetscInt, PetscBool, PetscInt *, PetscInt *[]);
141 PETSC_EXTERN PetscErrorCode DMPlexRestoreTransitiveClosure(DM, PetscInt, PetscBool, PetscInt *, PetscInt *[]);
142 
143 /* Mesh Generation */
144 PETSC_EXTERN PetscErrorCode DMPlexGenerate(DM, const char [], PetscBool , DM *);
145 PETSC_EXTERN PetscErrorCode DMPlexGenerateRegister(const char[],PetscErrorCode (*)(DM,PetscBool,DM*),PetscErrorCode (*)(DM,PetscReal*,DM*),PetscErrorCode (*)(DM,DMLabel,DM*),PetscInt);
146 PETSC_EXTERN PetscErrorCode DMPlexGenerateRegisterAll(void);
147 PETSC_EXTERN PetscErrorCode DMPlexGenerateRegisterDestroy(void);
148 PETSC_EXTERN PetscErrorCode DMPlexCopyCoordinates(DM, DM);
149 PETSC_EXTERN PetscErrorCode DMPlexCreateDoublet(MPI_Comm, PetscInt, PetscBool, PetscBool, PetscReal, DM *);
150 PETSC_EXTERN PetscErrorCode DMPlexCreateSquareBoundary(DM, const PetscReal [], const PetscReal [], const PetscInt []);
151 PETSC_EXTERN PetscErrorCode DMPlexCreateCubeBoundary(DM, const PetscReal [], const PetscReal [], const PetscInt []);
152 PETSC_EXTERN PetscErrorCode DMPlexCreateBoxMesh(MPI_Comm, PetscInt, PetscBool, const PetscInt[], const PetscReal[], const PetscReal[], const DMBoundaryType[], PetscBool, DM *);
153 PETSC_EXTERN PetscErrorCode DMPlexCreateSphereMesh(MPI_Comm, PetscInt, PetscBool, PetscReal, DM *);
154 PETSC_EXTERN PetscErrorCode DMPlexCreateBallMesh(MPI_Comm, PetscInt, PetscReal, DM *);
155 PETSC_EXTERN PetscErrorCode DMPlexCreateHexCylinderMesh(MPI_Comm, PetscInt, DMBoundaryType, DM *);
156 PETSC_EXTERN PetscErrorCode DMPlexCreateWedgeCylinderMesh(MPI_Comm, PetscInt, PetscBool, DM *);
157 PETSC_EXTERN PetscErrorCode DMPlexCreateWedgeBoxMesh(MPI_Comm, const PetscInt[], const PetscReal[], const PetscReal[], const DMBoundaryType[], PetscBool, PetscBool, DM *);
158 PETSC_EXTERN PetscErrorCode DMPlexExtrude(DM, PetscInt, PetscReal, PetscBool, const PetscReal[], PetscBool, DM *);
159 PETSC_EXTERN PetscErrorCode DMPlexCreateConeSection(DM, PetscSection *);
160 
161 PETSC_EXTERN PetscErrorCode DMPlexCheckSymmetry(DM);
162 PETSC_EXTERN PetscErrorCode DMPlexCheckSkeleton(DM, PetscInt);
163 PETSC_EXTERN PetscErrorCode DMPlexCheckFaces(DM, PetscInt);
164 PETSC_EXTERN PetscErrorCode DMPlexCheckGeometry(DM);
165 PETSC_EXTERN PetscErrorCode DMPlexCheckPointSF(DM);
166 PETSC_EXTERN PetscErrorCode DMPlexCheckInterfaceCones(DM);
167 PETSC_EXTERN PetscErrorCode DMPlexCheckCellShape(DM, PetscBool, PetscReal);
168 PETSC_EXTERN PetscErrorCode DMPlexComputeOrthogonalQuality(DM, PetscFV, PetscReal, Vec *, DMLabel *);
169 
170 PETSC_EXTERN PetscErrorCode DMPlexTriangleSetOptions(DM, const char *);
171 PETSC_EXTERN PetscErrorCode DMPlexTetgenSetOptions(DM, const char *);
172 
173 PETSC_EXTERN PetscErrorCode DMPlexCreateFromFile(MPI_Comm, const char[], PetscBool, DM *);
174 PETSC_EXTERN PetscErrorCode DMPlexCreateExodus(MPI_Comm, PetscInt, PetscBool, DM *);
175 PETSC_EXTERN PetscErrorCode DMPlexCreateExodusFromFile(MPI_Comm, const char [], PetscBool, DM *);
176 PETSC_EXTERN PetscErrorCode DMPlexCreateCGNS(MPI_Comm, PetscInt, PetscBool, DM *);
177 PETSC_EXTERN PetscErrorCode DMPlexCreateCGNSFromFile(MPI_Comm, const char[], PetscBool, DM *);
178 PETSC_EXTERN PetscErrorCode DMPlexCreateGmsh(MPI_Comm, PetscViewer, PetscBool, DM *);
179 PETSC_EXTERN PetscErrorCode DMPlexCreateGmshFromFile(MPI_Comm, const char [], PetscBool, DM *);
180 PETSC_EXTERN PetscErrorCode DMPlexCreateFluent(MPI_Comm, PetscViewer, PetscBool, DM *);
181 PETSC_EXTERN PetscErrorCode DMPlexCreateFluentFromFile(MPI_Comm, const char [], PetscBool, DM *);
182 PETSC_EXTERN PetscErrorCode DMPlexCreateMedFromFile(MPI_Comm, const char [], PetscBool, DM *);
183 PETSC_EXTERN PetscErrorCode DMPlexCreatePLYFromFile(MPI_Comm, const char [], PetscBool, DM *);
184 PETSC_EXTERN PetscErrorCode DMPlexCreateEGADSFromFile(MPI_Comm, const char [], DM *);
185 
186 PETSC_EXTERN PetscErrorCode PetscViewerExodusIIOpen(MPI_Comm comm, const char name[], PetscFileMode type, PetscViewer *exo);
187 PETSC_EXTERN PetscErrorCode PetscViewerExodusIIGetId(PetscViewer, int *);
188 PETSC_EXTERN PetscErrorCode PetscViewerExodusIISetOrder(PetscViewer,PetscInt);
189 PETSC_EXTERN PetscErrorCode PetscViewerExodusIIGetOrder(PetscViewer,PetscInt*);
190 
191 /* Mesh Partitioning and Distribution */
192 PETSC_EXTERN PetscErrorCode DMPlexCreateNeighborCSR(DM, PetscInt, PetscInt *, PetscInt **, PetscInt **);
193 PETSC_EXTERN PetscErrorCode DMPlexGetPartitioner(DM, PetscPartitioner *);
194 PETSC_EXTERN PetscErrorCode DMPlexSetPartitioner(DM, PetscPartitioner);
195 PETSC_EXTERN PetscErrorCode DMPlexCreatePartitionerGraph(DM, PetscInt, PetscInt *, PetscInt **, PetscInt **, IS *);
196 PETSC_EXTERN PetscErrorCode DMPlexPartitionLabelInvert(DM, DMLabel, PetscSF, DMLabel);
197 PETSC_EXTERN PetscErrorCode DMPlexPartitionLabelClosure(DM, DMLabel);
198 PETSC_EXTERN PetscErrorCode DMPlexPartitionLabelAdjacency(DM, DMLabel);
199 PETSC_EXTERN PetscErrorCode DMPlexPartitionLabelPropagate(DM, DMLabel);
200 PETSC_EXTERN PetscErrorCode DMPlexPartitionLabelCreateSF(DM, DMLabel, PetscSF *);
201 PETSC_EXTERN PetscErrorCode DMPlexSetPartitionBalance(DM, PetscBool);
202 PETSC_EXTERN PetscErrorCode DMPlexGetPartitionBalance(DM, PetscBool *);
203 PETSC_EXTERN PetscErrorCode DMPlexIsDistributed(DM, PetscBool *);
204 PETSC_EXTERN PetscErrorCode DMPlexDistribute(DM, PetscInt, PetscSF*, DM*);
205 PETSC_EXTERN PetscErrorCode DMPlexDistributeOverlap(DM, PetscInt, PetscSF *, DM *);
206 PETSC_EXTERN PetscErrorCode DMPlexGetOverlap(DM, PetscInt *);
207 PETSC_EXTERN PetscErrorCode DMPlexDistributeField(DM,PetscSF,PetscSection,Vec,PetscSection,Vec);
208 PETSC_EXTERN PetscErrorCode DMPlexDistributeFieldIS(DM, PetscSF, PetscSection, IS, PetscSection, IS *);
209 PETSC_EXTERN PetscErrorCode DMPlexDistributeData(DM,PetscSF,PetscSection,MPI_Datatype,void*,PetscSection,void**);
210 PETSC_EXTERN PetscErrorCode DMPlexRebalanceSharedPoints(DM, PetscInt, PetscBool, PetscBool, PetscBool*);
211 PETSC_EXTERN PetscErrorCode DMPlexMigrate(DM, PetscSF, DM);
212 PETSC_EXTERN PetscErrorCode DMPlexGetGatherDM(DM, PetscSF*, DM*);
213 PETSC_EXTERN PetscErrorCode DMPlexGetRedundantDM(DM, PetscSF*, DM*);
214 PETSC_EXTERN PetscErrorCode DMPlexSetAdjacencyUser(DM, PetscErrorCode (*)(DM,PetscInt,PetscInt*,PetscInt[],void*),void*);
215 PETSC_EXTERN PetscErrorCode DMPlexGetAdjacencyUser(DM, PetscErrorCode (**)(DM,PetscInt,PetscInt*,PetscInt[],void*),void**);
216 PETSC_EXTERN PetscErrorCode DMPlexSetAdjacencyUseAnchors(DM,PetscBool);
217 PETSC_EXTERN PetscErrorCode DMPlexGetAdjacencyUseAnchors(DM,PetscBool*);
218 PETSC_EXTERN PetscErrorCode DMPlexGetAdjacency(DM, PetscInt, PetscInt *, PetscInt *[]);
219 PETSC_EXTERN PetscErrorCode DMPlexSetMigrationSF(DM, PetscSF);
220 PETSC_EXTERN PetscErrorCode DMPlexGetMigrationSF(DM, PetscSF *);
221 
222 PETSC_EXTERN PetscErrorCode DMPlexGetOrdering(DM, MatOrderingType, DMLabel, IS *);
223 PETSC_EXTERN PetscErrorCode DMPlexPermute(DM, IS, DM *);
224 
225 PETSC_EXTERN PetscErrorCode DMPlexCreateProcessSF(DM, PetscSF, IS *, PetscSF *);
226 PETSC_EXTERN PetscErrorCode DMPlexCreateTwoSidedProcessSF(DM, PetscSF, PetscSection, IS, PetscSection, IS, IS *, PetscSF *);
227 PETSC_EXTERN PetscErrorCode DMPlexDistributeOwnership(DM, PetscSection, IS *, PetscSection, IS *);
228 PETSC_EXTERN PetscErrorCode DMPlexCreateOverlapLabel(DM, PetscInt, PetscSection, IS, PetscSection, IS, DMLabel *);
229 PETSC_EXTERN PetscErrorCode DMPlexCreateOverlapMigrationSF(DM, PetscSF, PetscSF *);
230 PETSC_EXTERN PetscErrorCode DMPlexStratifyMigrationSF(DM, PetscSF, PetscSF *);
231 
232 /* Submesh Support */
233 PETSC_EXTERN PetscErrorCode DMPlexCreateSubmesh(DM, DMLabel, PetscInt, PetscBool, DM*);
234 PETSC_EXTERN PetscErrorCode DMPlexCreateHybridMesh(DM, DMLabel, DMLabel, DMLabel *, DMLabel *, DM *, DM *);
235 PETSC_EXTERN PetscErrorCode DMPlexGetSubpointMap(DM, DMLabel*);
236 PETSC_EXTERN PetscErrorCode DMPlexSetSubpointMap(DM, DMLabel);
237 PETSC_EXTERN PetscErrorCode DMPlexGetSubpointIS(DM, IS *);
238 
239 PETSC_EXTERN PetscErrorCode DMGetEnclosureRelation(DM, DM, DMEnclosureType *);
240 PETSC_EXTERN PetscErrorCode DMGetEnclosurePoint(DM, DM, DMEnclosureType, PetscInt, PetscInt *);
241 
242 PETSC_EXTERN PetscErrorCode DMPlexLabelComplete(DM, DMLabel);
243 PETSC_EXTERN PetscErrorCode DMPlexLabelCohesiveComplete(DM, DMLabel, DMLabel, PetscBool, DM);
244 PETSC_EXTERN PetscErrorCode DMPlexLabelAddCells(DM, DMLabel);
245 PETSC_EXTERN PetscErrorCode DMPlexLabelAddFaceCells(DM, DMLabel);
246 PETSC_EXTERN PetscErrorCode DMPlexLabelClearCells(DM, DMLabel);
247 
248 PETSC_EXTERN PetscErrorCode DMPlexGetRefinementLimit(DM, PetscReal *);
249 PETSC_EXTERN PetscErrorCode DMPlexSetRefinementLimit(DM, PetscReal);
250 PETSC_EXTERN PetscErrorCode DMPlexGetRefinementUniform(DM, PetscBool *);
251 PETSC_EXTERN PetscErrorCode DMPlexSetRefinementUniform(DM, PetscBool);
252 PETSC_EXTERN PetscErrorCode DMPlexGetRefinementFunction(DM, PetscErrorCode (**)(const PetscReal [], PetscReal *));
253 PETSC_EXTERN PetscErrorCode DMPlexSetRefinementFunction(DM, PetscErrorCode (*)(const PetscReal [], PetscReal *));
254 PETSC_EXTERN PetscErrorCode DMPlexCreateCoarsePointIS(DM, IS *);
255 PETSC_EXTERN PetscErrorCode DMPlexGetRegularRefinement(DM, PetscBool *);
256 PETSC_EXTERN PetscErrorCode DMPlexSetRegularRefinement(DM, PetscBool);
257 PETSC_EXTERN PetscErrorCode DMPlexGetCellRefinerType(DM, DMPlexCellRefinerType *);
258 PETSC_EXTERN PetscErrorCode DMPlexSetCellRefinerType(DM, DMPlexCellRefinerType);
259 
260 /* Support for cell-vertex meshes */
261 PETSC_EXTERN PetscErrorCode DMPlexGetNumFaceVertices(DM, PetscInt, PetscInt, PetscInt *);
262 PETSC_EXTERN PetscErrorCode DMPlexGetOrientedFace(DM, PetscInt, PetscInt, const PetscInt [], PetscInt, PetscInt [], PetscInt [], PetscInt [], PetscBool *);
263 
264 /* Geometry Support */
265 PETSC_EXTERN PetscErrorCode DMPlexGetMinRadius(DM, PetscReal *);
266 PETSC_EXTERN PetscErrorCode DMPlexSetMinRadius(DM, PetscReal);
267 PETSC_EXTERN PetscErrorCode DMPlexComputeProjection2Dto1D(PetscScalar[], PetscReal[]);
268 PETSC_EXTERN PetscErrorCode DMPlexComputeProjection3Dto1D(PetscScalar[], PetscReal[]);
269 PETSC_EXTERN PetscErrorCode DMPlexComputeProjection3Dto2D(PetscInt, PetscScalar[], PetscReal[]);
270 
271 /* Point Location */
272 typedef struct _PetscGridHash *PetscGridHash;
273 PETSC_EXTERN PetscErrorCode PetscGridHashCreate(MPI_Comm, PetscInt, const PetscScalar[], PetscGridHash *);
274 PETSC_EXTERN PetscErrorCode PetscGridHashEnlarge(PetscGridHash, const PetscScalar []);
275 PETSC_EXTERN PetscErrorCode PetscGridHashSetGrid(PetscGridHash, const PetscInt [], const PetscReal []);
276 PETSC_EXTERN PetscErrorCode PetscGridHashGetEnclosingBox(PetscGridHash, PetscInt, const PetscScalar [], PetscInt [], PetscInt []);
277 PETSC_EXTERN PetscErrorCode PetscGridHashDestroy(PetscGridHash *);
278 PETSC_EXTERN PetscErrorCode DMPlexFindVertices(DM, PetscInt, const PetscReal [], PetscReal, PetscInt []);
279 
280 /* FVM Support */
281 PETSC_EXTERN PetscErrorCode DMPlexComputeCellGeometryFVM(DM, PetscInt, PetscReal *, PetscReal [], PetscReal []);
282 PETSC_EXTERN PetscErrorCode DMPlexComputeGeometryFVM(DM, Vec *, Vec *);
283 PETSC_EXTERN PetscErrorCode DMPlexComputeGradientFVM(DM, PetscFV, Vec, Vec, DM *);
284 PETSC_EXTERN PetscErrorCode DMPlexGetDataFVM(DM, PetscFV, Vec *, Vec *, DM *);
285 
286 /* FEM Support */
287 PETSC_EXTERN PetscErrorCode DMPlexComputeGeometryFEM(DM, Vec *);
288 PETSC_EXTERN PetscErrorCode DMPlexGetGeometryFVM(DM,Vec*,Vec*,PetscReal*);
289 PETSC_EXTERN PetscErrorCode DMPlexGetGradientDM(DM,PetscFV,DM*);
290 PETSC_EXTERN PetscErrorCode DMPlexInsertBoundaryValues(DM, PetscBool, Vec, PetscReal, Vec, Vec, Vec);
291 PETSC_EXTERN PetscErrorCode DMPlexInsertTimeDerivativeBoundaryValues(DM, PetscBool, Vec, PetscReal, Vec, Vec, Vec);
292 PETSC_EXTERN PetscErrorCode DMPlexInsertBoundaryValuesEssential(DM, PetscReal, PetscInt, PetscInt, const PetscInt[], DMLabel, PetscInt, const PetscInt[],
293                                                                 PetscErrorCode (*)(PetscInt, PetscReal, const PetscReal[], PetscInt, PetscScalar *, void *), void *, Vec);
294 PETSC_EXTERN PetscErrorCode DMPlexInsertBoundaryValuesEssentialField(DM, PetscReal, Vec, PetscInt, PetscInt, const PetscInt[], DMLabel, PetscInt, const PetscInt [],
295                                                                      void (*)(PetscInt, PetscInt, PetscInt,
296                                                                               const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[],
297                                                                               const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[],
298                                                                               PetscReal, const PetscReal[], PetscInt, const PetscScalar[],
299                                                                               PetscScalar[]),
300                                                                      void *, Vec);
301 PETSC_EXTERN PetscErrorCode DMPlexInsertBoundaryValuesEssentialBdField(DM, PetscReal, Vec, PetscInt, PetscInt, const PetscInt[], DMLabel, PetscInt, const PetscInt [],
302                                                                        void (*)(PetscInt, PetscInt, PetscInt,
303                                                                                 const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[],
304                                                                                 const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[],
305                                                                                 PetscReal, const PetscReal[], const PetscReal[], PetscInt, const PetscScalar[],
306                                                                                 PetscScalar[]),
307                                                                        void *, Vec);
308 PETSC_EXTERN PetscErrorCode DMPlexInsertBoundaryValuesRiemann(DM, PetscReal, Vec, Vec, Vec, PetscInt, PetscInt, const PetscInt[], DMLabel, PetscInt, const PetscInt [],
309                                                               PetscErrorCode (*)(PetscReal,const PetscReal*,const PetscReal*,const PetscScalar*,PetscScalar*,void*), void *, Vec);
310 PETSC_EXTERN PetscErrorCode DMPlexMarkBoundaryFaces(DM, PetscInt, DMLabel);
311 
312 PETSC_EXTERN PetscErrorCode DMPlexCreateSection(DM, DMLabel [], const PetscInt [], const PetscInt [], PetscInt, const PetscInt [], const IS [], const IS [], IS, PetscSection *);
313 PETSC_EXTERN PetscErrorCode DMPlexGetSubdomainSection(DM, PetscSection*);
314 
315 PETSC_EXTERN PetscErrorCode DMPlexComputeCellGeometryAffineFEM(DM, PetscInt, PetscReal *, PetscReal *, PetscReal *, PetscReal *);
316 PETSC_EXTERN PetscErrorCode DMPlexComputeCellGeometryFEM(DM, PetscInt, PetscQuadrature, PetscReal *, PetscReal *, PetscReal *, PetscReal *);
317 PETSC_EXTERN PetscErrorCode DMPlexCoordinatesToReference(DM, PetscInt, PetscInt, const PetscReal [], PetscReal[]);
318 PETSC_EXTERN PetscErrorCode DMPlexReferenceToCoordinates(DM, PetscInt, PetscInt, const PetscReal [], PetscReal[]);
319 PETSC_EXTERN PetscErrorCode DMPlexShearGeometry(DM, DMDirection, PetscReal[]);
320 PETSC_EXTERN PetscErrorCode DMPlexRemapGeometry(DM, PetscReal,
321                                                 void (*)(PetscInt, PetscInt, PetscInt,
322                                                          const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[],
323                                                          const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[],
324                                                          PetscReal, const PetscReal[], PetscInt, const PetscScalar[], PetscScalar[]));
325 
326 PETSC_EXTERN PetscErrorCode DMPlexVecGetClosure(DM, PetscSection, Vec, PetscInt, PetscInt *, PetscScalar *[]);
327 PETSC_EXTERN PetscErrorCode DMPlexVecRestoreClosure(DM, PetscSection, Vec, PetscInt, PetscInt *, PetscScalar *[]);
328 PETSC_EXTERN PetscErrorCode DMPlexVecSetClosure(DM, PetscSection, Vec, PetscInt, const PetscScalar[], InsertMode);
329 PETSC_EXTERN PetscErrorCode DMPlexMatSetClosure(DM, PetscSection, PetscSection, Mat, PetscInt, const PetscScalar[], InsertMode);
330 PETSC_EXTERN PetscErrorCode DMPlexMatSetClosureGeneral(DM, PetscSection, PetscSection, DM, PetscSection, PetscSection, Mat, PetscInt, const PetscScalar[], InsertMode);
331 PETSC_EXTERN PetscErrorCode DMPlexGetClosureIndices(DM, PetscSection, PetscSection, PetscInt, PetscBool, PetscInt *, PetscInt *[], PetscInt *, PetscScalar *[]);
332 PETSC_EXTERN PetscErrorCode DMPlexRestoreClosureIndices(DM, PetscSection, PetscSection, PetscInt, PetscBool, PetscInt *, PetscInt *[], PetscInt *, PetscScalar *[]);
333 PETSC_EXTERN PetscErrorCode DMPlexMatSetClosureRefined(DM, PetscSection, PetscSection, DM, PetscSection, PetscSection, Mat, PetscInt, const PetscScalar[], InsertMode);
334 PETSC_EXTERN PetscErrorCode DMPlexMatGetClosureIndicesRefined(DM, PetscSection, PetscSection, DM, PetscSection, PetscSection, PetscInt, PetscInt[], PetscInt[]);
335 PETSC_EXTERN PetscErrorCode DMPlexCreateClosureIndex(DM, PetscSection);
336 PETSC_EXTERN PetscErrorCode DMPlexSetClosurePermutationTensor(DM, PetscInt, PetscSection);
337 
338 PETSC_EXTERN PetscErrorCode DMPlexConstructGhostCells(DM, const char [], PetscInt *, DM *);
339 PETSC_EXTERN PetscErrorCode DMPlexConstructCohesiveCells(DM, DMLabel, DMLabel, DM *);
340 
341 PETSC_EXTERN PetscErrorCode DMPlexGetVTKCellHeight(DM, PetscInt *);
342 PETSC_EXTERN PetscErrorCode DMPlexSetVTKCellHeight(DM, PetscInt);
343 PETSC_EXTERN PetscErrorCode DMPlexVTKWriteAll(PetscObject, PetscViewer);
344 PETSC_EXTERN PetscErrorCode DMPlexGetGhostCellStratum(DM, PetscInt *, PetscInt *);
345 PETSC_EXTERN PetscErrorCode DMPlexGetSimplexOrBoxCells(DM, PetscInt, PetscInt *, PetscInt *);
346 
347 PETSC_EXTERN PetscErrorCode DMPlexGetCellFields(DM, IS, Vec, Vec, Vec, PetscScalar **, PetscScalar **, PetscScalar **);
348 PETSC_EXTERN PetscErrorCode DMPlexRestoreCellFields(DM, IS, Vec, Vec, Vec, PetscScalar **, PetscScalar **, PetscScalar **);
349 PETSC_EXTERN PetscErrorCode DMPlexGetFaceFields(DM, PetscInt, PetscInt, Vec, Vec, Vec, Vec, Vec, PetscInt *, PetscScalar **, PetscScalar **);
350 PETSC_EXTERN PetscErrorCode DMPlexRestoreFaceFields(DM, PetscInt, PetscInt, Vec, Vec, Vec, Vec, Vec, PetscInt *, PetscScalar **, PetscScalar **);
351 PETSC_EXTERN PetscErrorCode DMPlexGetFaceGeometry(DM, PetscInt, PetscInt, Vec, Vec, PetscInt *, PetscFVFaceGeom **, PetscReal **);
352 PETSC_EXTERN PetscErrorCode DMPlexRestoreFaceGeometry(DM, PetscInt, PetscInt, Vec, Vec, PetscInt *, PetscFVFaceGeom **, PetscReal **);
353 
354 PETSC_EXTERN PetscErrorCode DMPlexGetScale(DM, PetscUnit, PetscReal *);
355 PETSC_EXTERN PetscErrorCode DMPlexSetScale(DM, PetscUnit, PetscReal);
356 
357 typedef struct {
358   DM    dm;
359   Vec   u; /* The base vector for the Jacobian action J(u) x */
360   Mat   J; /* Preconditioner for testing */
361   void *user;
362 } JacActionCtx;
363 
364 PETSC_EXTERN PetscErrorCode DMPlexSetMaxProjectionHeight(DM, PetscInt);
365 PETSC_EXTERN PetscErrorCode DMPlexGetMaxProjectionHeight(DM, PetscInt*);
366 PETSC_EXTERN PetscErrorCode DMPlexGetActivePoint(DM, PetscInt*);
367 PETSC_EXTERN PetscErrorCode DMPlexSetActivePoint(DM, PetscInt);
368 PETSC_EXTERN PetscErrorCode DMPlexProjectFieldLocal(DM, Vec,
369                                                     void (**)(PetscInt, PetscInt, PetscInt,
370                                                               const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[],
371                                                               const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[],
372                                                               PetscReal, const PetscReal [], PetscScalar []), InsertMode, Vec);
373 PETSC_EXTERN PetscErrorCode DMPlexComputeL2DiffLocal(DM, PetscReal, PetscErrorCode (**)(PetscInt, PetscReal, const PetscReal [], PetscInt, PetscScalar *, void *), void **, Vec, PetscReal *);
374 PETSC_EXTERN PetscErrorCode DMPlexComputeL2FieldDiff(DM, PetscReal, PetscErrorCode (**)(PetscInt, PetscReal, const PetscReal [], PetscInt, PetscScalar *, void *), void **, Vec, PetscReal[]);
375 PETSC_EXTERN PetscErrorCode DMPlexComputeL2DiffVec(DM, PetscReal, PetscErrorCode (**)(PetscInt, PetscReal, const PetscReal [], PetscInt, PetscScalar *, void *), void **, Vec, Vec);
376 PETSC_EXTERN PetscErrorCode DMPlexComputeCellwiseIntegralFEM(DM, Vec, Vec, void *);
377 PETSC_EXTERN PetscErrorCode DMPlexComputeIntegralFEM(DM, Vec, PetscScalar *, void *);
378 PETSC_EXTERN PetscErrorCode DMPlexComputeBdIntegral(DM, Vec, DMLabel, PetscInt, const PetscInt[],
379                                                     void (*)(PetscInt, PetscInt, PetscInt,
380                                                              const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[],
381                                                              const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[],
382                                                              PetscReal, const PetscReal[], const PetscReal[], PetscInt, const PetscScalar[], PetscScalar[]),
383                                                     PetscScalar *, void *);
384 PETSC_EXTERN PetscErrorCode DMPlexComputeInterpolatorNested(DM, DM, PetscBool, Mat, void *);
385 PETSC_EXTERN PetscErrorCode DMPlexComputeInterpolatorGeneral(DM, DM, Mat, void *);
386 PETSC_EXTERN PetscErrorCode DMPlexComputeGradientClementInterpolant(DM, Vec, Vec);
387 PETSC_EXTERN PetscErrorCode DMPlexComputeInjectorFEM(DM, DM, VecScatter *, void *);
388 PETSC_EXTERN PetscErrorCode DMPlexComputeMassMatrixNested(DM, DM, Mat, void *);
389 PETSC_EXTERN PetscErrorCode DMPlexComputeMassMatrixGeneral(DM, DM, Mat, void *);
390 
391 PETSC_EXTERN PetscErrorCode DMPlexCreateRigidBody(DM, PetscInt, MatNullSpace *);
392 PETSC_EXTERN PetscErrorCode DMPlexCreateRigidBodies(DM, PetscInt, DMLabel, const PetscInt[], const PetscInt[], MatNullSpace *);
393 
394 PETSC_EXTERN PetscErrorCode DMPlexSetSNESLocalFEM(DM,void *,void *,void *);
395 PETSC_EXTERN PetscErrorCode DMPlexSNESComputeBoundaryFEM(DM, Vec, void *);
396 PETSC_EXTERN PetscErrorCode DMPlexSNESComputeResidualFEM(DM, Vec, Vec, void *);
397 PETSC_EXTERN PetscErrorCode DMPlexSNESComputeJacobianFEM(DM, Vec, Mat, Mat, void *);
398 PETSC_EXTERN PetscErrorCode DMPlexComputeJacobianAction(DM, IS, PetscReal, PetscReal, Vec, Vec, Vec, Vec, void *);
399 PETSC_EXTERN PetscErrorCode DMPlexComputeBdResidualSingle(DM, PetscReal, PetscWeakForm, DMLabel, PetscInt, const PetscInt[], PetscInt, Vec, Vec, Vec);
400 PETSC_EXTERN PetscErrorCode DMPlexComputeBdJacobianSingle(DM, PetscReal, PetscWeakForm, DMLabel, PetscInt, const PetscInt[], PetscInt, Vec, Vec, PetscReal, Mat, Mat);
401 
402 PETSC_EXTERN PetscErrorCode DMPlexTSComputeBoundary(DM, PetscReal, Vec, Vec, void *);
403 PETSC_EXTERN PetscErrorCode DMPlexTSComputeRHSFunctionFVM(DM, PetscReal, Vec, Vec, void *);
404 PETSC_EXTERN PetscErrorCode DMPlexTSComputeIFunctionFEM(DM, PetscReal, Vec, Vec, Vec, void *);
405 PETSC_EXTERN PetscErrorCode DMPlexTSComputeIJacobianFEM(DM, PetscReal, Vec, Vec, PetscReal, Mat, Mat, void *);
406 
407 PETSC_EXTERN PetscErrorCode DMPlexComputeRHSFunctionFVM(DM, PetscReal, Vec, Vec, void *);
408 PETSC_EXTERN PetscErrorCode DMPlexReconstructGradientsFVM(DM,Vec,Vec);
409 
410 /* anchors */
411 PETSC_EXTERN PetscErrorCode DMPlexGetAnchors(DM, PetscSection*, IS*);
412 PETSC_EXTERN PetscErrorCode DMPlexSetAnchors(DM, PetscSection, IS);
413 /* tree */
414 PETSC_EXTERN PetscErrorCode DMPlexSetReferenceTree(DM, DM);
415 PETSC_EXTERN PetscErrorCode DMPlexGetReferenceTree(DM, DM*);
416 PETSC_EXTERN PetscErrorCode DMPlexReferenceTreeGetChildSymmetry(DM, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt *, PetscInt *);
417 PETSC_EXTERN PetscErrorCode DMPlexCreateDefaultReferenceTree(MPI_Comm, PetscInt, PetscBool, DM*);
418 PETSC_EXTERN PetscErrorCode DMPlexSetTree(DM, PetscSection, PetscInt [], PetscInt []);
419 PETSC_EXTERN PetscErrorCode DMPlexGetTree(DM, PetscSection *, PetscInt *[], PetscInt *[], PetscSection *, PetscInt *[]);
420 PETSC_EXTERN PetscErrorCode DMPlexGetTreeParent(DM, PetscInt, PetscInt *, PetscInt *);
421 PETSC_EXTERN PetscErrorCode DMPlexGetTreeChildren(DM, PetscInt, PetscInt *, const PetscInt *[]);
422 PETSC_EXTERN PetscErrorCode DMPlexTreeRefineCell(DM, PetscInt, DM *);
423 PETSC_EXTERN PetscErrorCode DMPlexComputeInjectorReferenceTree(DM, Mat *);
424 PETSC_EXTERN PetscErrorCode DMPlexTransferVecTree(DM,Vec,DM,Vec,PetscSF,PetscSF,PetscInt *,PetscInt *,PetscBool,PetscReal);
425 
426 PETSC_EXTERN PetscErrorCode DMPlexMonitorThroughput(DM, void *);
427 
428 /* natural order */
429 PETSC_EXTERN PetscErrorCode DMPlexCreateGlobalToNaturalSF(DM, PetscSection, PetscSF, PetscSF *);
430 PETSC_EXTERN PetscErrorCode DMPlexSetGlobalToNaturalSF(DM, PetscSF);
431 PETSC_EXTERN PetscErrorCode DMPlexGetGlobalToNaturalSF(DM, PetscSF *);
432 PETSC_EXTERN PetscErrorCode DMPlexGlobalToNaturalBegin(DM, Vec, Vec);
433 PETSC_EXTERN PetscErrorCode DMPlexGlobalToNaturalEnd(DM, Vec, Vec);
434 PETSC_EXTERN PetscErrorCode DMPlexNaturalToGlobalBegin(DM, Vec, Vec);
435 PETSC_EXTERN PetscErrorCode DMPlexNaturalToGlobalEnd(DM, Vec, Vec);
436 
437 /* mesh adaptation */
438 PETSC_EXTERN PetscErrorCode DMPlexAdapt(DM, Vec, const char [], DM *);
439 PETSC_EXTERN PetscErrorCode DMPlexSnapToGeomModel(DM, PetscInt, const PetscScalar[], PetscScalar[]);
440 
441 PETSC_EXTERN PetscErrorCode DMPlexGlobalToLocalBasis(DM, Vec);
442 PETSC_EXTERN PetscErrorCode DMPlexLocalToGlobalBasis(DM, Vec);
443 PETSC_EXTERN PetscErrorCode DMPlexCreateBasisRotation(DM, PetscReal, PetscReal, PetscReal);
444 
445 PETSC_EXTERN PetscErrorCode DMPlexCellRefinerCreate(DM, DMPlexCellRefiner *);
446 PETSC_EXTERN PetscErrorCode DMPlexCellRefinerSetUp(DMPlexCellRefiner);
447 PETSC_EXTERN PetscErrorCode DMPlexCellRefinerDestroy(DMPlexCellRefiner *);
448 PETSC_EXTERN PetscErrorCode DMPlexCellRefinerRefine(DMPlexCellRefiner, DMPolytopeType, PetscInt, PetscInt *, PetscInt *, DMPolytopeType *[], PetscInt *[], PetscInt *[], PetscInt *[]);
449 PETSC_EXTERN PetscErrorCode DMPlexCellRefinerGetAffineTransforms(DMPlexCellRefiner, DMPolytopeType, PetscInt *, PetscReal *[], PetscReal *[], PetscReal *[]);
450 PETSC_EXTERN PetscErrorCode DMPlexCellRefinerGetAffineFaceTransforms(DMPlexCellRefiner, DMPolytopeType, PetscInt *, PetscReal *[], PetscReal *[], PetscReal *[], PetscReal *[]);
451 PETSC_EXTERN PetscErrorCode DMPlexRefineUniform(DM, DMPlexCellRefiner, DM *);
452 
453 #endif
454