1 /* 2 DMPlex, for parallel unstructured distributed mesh problems. 3 */ 4 #if !defined(__PETSCDMPLEX_H) 5 #define __PETSCDMPLEX_H 6 7 #include <petscdm.h> 8 #include <petscdmplextypes.h> 9 #include <petscdt.h> 10 #include <petscfe.h> 11 #include <petscfv.h> 12 #include <petscsftypes.h> 13 #include <petscdmfield.h> 14 15 PETSC_EXTERN PetscClassId PETSCPARTITIONER_CLASSID; 16 17 /*J 18 PetscPartitionerType - String with the name of a PETSc graph partitioner 19 20 Level: beginner 21 22 .seealso: PetscPartitionerSetType(), PetscPartitioner 23 J*/ 24 typedef const char *PetscPartitionerType; 25 #define PETSCPARTITIONERCHACO "chaco" 26 #define PETSCPARTITIONERPARMETIS "parmetis" 27 #define PETSCPARTITIONERPTSCOTCH "ptscotch" 28 #define PETSCPARTITIONERSHELL "shell" 29 #define PETSCPARTITIONERSIMPLE "simple" 30 #define PETSCPARTITIONERGATHER "gather" 31 #define PETSCPARTITIONERMATPARTITIONING "matpartitioning" 32 33 PETSC_EXTERN PetscFunctionList PetscPartitionerList; 34 PETSC_EXTERN PetscErrorCode PetscPartitionerCreate(MPI_Comm, PetscPartitioner *); 35 PETSC_EXTERN PetscErrorCode PetscPartitionerDestroy(PetscPartitioner *); 36 PETSC_EXTERN PetscErrorCode PetscPartitionerSetType(PetscPartitioner, PetscPartitionerType); 37 PETSC_EXTERN PetscErrorCode PetscPartitionerGetType(PetscPartitioner, PetscPartitionerType *); 38 PETSC_EXTERN PetscErrorCode PetscPartitionerSetUp(PetscPartitioner); 39 PETSC_EXTERN PetscErrorCode PetscPartitionerSetFromOptions(PetscPartitioner); 40 PETSC_STATIC_INLINE PetscErrorCode PetscPartitionerViewFromOptions(PetscPartitioner A,PetscObject B,const char name[]) {return PetscObjectViewFromOptions((PetscObject)A,B,name);} 41 PETSC_EXTERN PetscErrorCode PetscPartitionerView(PetscPartitioner, PetscViewer); 42 PETSC_EXTERN PetscErrorCode PetscPartitionerRegister(const char [], PetscErrorCode (*)(PetscPartitioner)); 43 PETSC_EXTERN PetscErrorCode PetscPartitionerRegisterDestroy(void); 44 45 PETSC_EXTERN PetscErrorCode PetscPartitionerPartition(PetscPartitioner, DM, PetscSection, IS *); 46 47 PETSC_EXTERN PetscErrorCode PetscPartitionerShellSetPartition(PetscPartitioner, PetscInt, const PetscInt[], const PetscInt[]); 48 PETSC_EXTERN PetscErrorCode PetscPartitionerShellSetRandom(PetscPartitioner, PetscBool); 49 PETSC_EXTERN PetscErrorCode PetscPartitionerShellGetRandom(PetscPartitioner, PetscBool *); 50 51 PETSC_EXTERN PetscErrorCode PetscPartitionerMatPartitioningGetMatPartitioning(PetscPartitioner part, MatPartitioning *mp); 52 53 PETSC_EXTERN PetscErrorCode DMPlexCreate(MPI_Comm, DM*); 54 PETSC_EXTERN PetscErrorCode DMPlexCreateCohesiveSubmesh(DM, PetscBool, const char [], PetscInt, DM *); 55 PETSC_EXTERN PetscErrorCode DMPlexCreateFromCellList(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscBool, const int[], PetscInt, const double[], DM*); 56 PETSC_EXTERN PetscErrorCode DMPlexCreateFromCellListParallel(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscBool, const int[], PetscInt, const PetscReal[], PetscSF *, DM *); 57 PETSC_EXTERN PetscErrorCode DMPlexCreateFromDAG(DM, PetscInt, const PetscInt [], const PetscInt [], const PetscInt [], const PetscInt [], const PetscScalar []); 58 PETSC_EXTERN PetscErrorCode DMPlexCreateReferenceCell(MPI_Comm, PetscInt, PetscBool, DM*); 59 PETSC_EXTERN PetscErrorCode DMPlexSetOptionsPrefix(DM, const char []); 60 PETSC_EXTERN PetscErrorCode DMPlexGetChart(DM, PetscInt *, PetscInt *); 61 PETSC_EXTERN PetscErrorCode DMPlexSetChart(DM, PetscInt, PetscInt); 62 PETSC_EXTERN PetscErrorCode DMPlexGetConeSize(DM, PetscInt, PetscInt *); 63 PETSC_EXTERN PetscErrorCode DMPlexSetConeSize(DM, PetscInt, PetscInt); 64 PETSC_EXTERN PetscErrorCode DMPlexAddConeSize(DM, PetscInt, PetscInt); 65 PETSC_EXTERN PetscErrorCode DMPlexGetCone(DM, PetscInt, const PetscInt *[]); 66 PETSC_EXTERN PetscErrorCode DMPlexGetConeTuple(DM, IS, PetscSection *, IS *); 67 PETSC_EXTERN PetscErrorCode DMPlexGetConeRecursive(DM, IS, IS *); 68 PETSC_EXTERN PetscErrorCode DMPlexSetCone(DM, PetscInt, const PetscInt[]); 69 PETSC_EXTERN PetscErrorCode DMPlexInsertCone(DM, PetscInt, PetscInt, PetscInt); 70 PETSC_EXTERN PetscErrorCode DMPlexInsertConeOrientation(DM, PetscInt, PetscInt, PetscInt); 71 PETSC_EXTERN PetscErrorCode DMPlexGetConeOrientation(DM, PetscInt, const PetscInt *[]); 72 PETSC_EXTERN PetscErrorCode DMPlexSetConeOrientation(DM, PetscInt, const PetscInt[]); 73 PETSC_EXTERN PetscErrorCode DMPlexGetSupportSize(DM, PetscInt, PetscInt *); 74 PETSC_EXTERN PetscErrorCode DMPlexSetSupportSize(DM, PetscInt, PetscInt); 75 PETSC_EXTERN PetscErrorCode DMPlexGetSupport(DM, PetscInt, const PetscInt *[]); 76 PETSC_EXTERN PetscErrorCode DMPlexSetSupport(DM, PetscInt, const PetscInt[]); 77 PETSC_EXTERN PetscErrorCode DMPlexInsertSupport(DM, PetscInt, PetscInt, PetscInt); 78 PETSC_EXTERN PetscErrorCode DMPlexGetConeSection(DM, PetscSection *); 79 PETSC_EXTERN PetscErrorCode DMPlexGetSupportSection(DM, PetscSection *); 80 PETSC_EXTERN PetscErrorCode DMPlexGetCones(DM, PetscInt *[]); 81 PETSC_EXTERN PetscErrorCode DMPlexGetConeOrientations(DM, PetscInt *[]); 82 PETSC_EXTERN PetscErrorCode DMPlexGetMaxSizes(DM, PetscInt *, PetscInt *); 83 PETSC_EXTERN PetscErrorCode DMPlexSymmetrize(DM); 84 PETSC_EXTERN PetscErrorCode DMPlexStratify(DM); 85 PETSC_EXTERN PetscErrorCode DMPlexEqual(DM,DM,PetscBool*); 86 PETSC_EXTERN PetscErrorCode DMPlexReverseCell(DM, PetscInt); 87 PETSC_EXTERN PetscErrorCode DMPlexOrientCell(DM,PetscInt,PetscInt,const PetscInt[]); 88 PETSC_EXTERN PetscErrorCode DMPlexOrient(DM); 89 PETSC_EXTERN PetscErrorCode DMPlexInterpolate(DM, DM *); 90 PETSC_EXTERN PetscErrorCode DMPlexUninterpolate(DM, DM *); 91 PETSC_EXTERN PetscErrorCode DMPlexPreallocateOperator(DM, PetscInt, PetscInt[], PetscInt[], PetscInt[], PetscInt[], Mat, PetscBool); 92 PETSC_EXTERN PetscErrorCode DMPlexGetPointLocal(DM,PetscInt,PetscInt*,PetscInt*); 93 PETSC_EXTERN PetscErrorCode DMPlexPointLocalRead(DM,PetscInt,const PetscScalar*,void*); 94 PETSC_EXTERN PetscErrorCode DMPlexPointLocalRef(DM,PetscInt,PetscScalar*,void*); 95 PETSC_EXTERN PetscErrorCode DMPlexGetPointLocalField(DM,PetscInt,PetscInt,PetscInt*,PetscInt*); 96 PETSC_EXTERN PetscErrorCode DMPlexPointLocalFieldRef(DM,PetscInt,PetscInt,PetscScalar*,void*); 97 PETSC_EXTERN PetscErrorCode DMPlexPointLocalFieldRead(DM,PetscInt,PetscInt,const PetscScalar*,void*); 98 PETSC_EXTERN PetscErrorCode DMPlexGetPointGlobal(DM,PetscInt,PetscInt*,PetscInt*); 99 PETSC_EXTERN PetscErrorCode DMPlexPointGlobalRead(DM,PetscInt,const PetscScalar*,const void*); 100 PETSC_EXTERN PetscErrorCode DMPlexPointGlobalRef(DM,PetscInt,PetscScalar*,void*); 101 PETSC_EXTERN PetscErrorCode DMPlexGetPointGlobalField(DM,PetscInt,PetscInt,PetscInt*,PetscInt*); 102 PETSC_EXTERN PetscErrorCode DMPlexPointGlobalFieldRef(DM,PetscInt,PetscInt,PetscScalar*,void*); 103 PETSC_EXTERN PetscErrorCode DMPlexPointGlobalFieldRead(DM,PetscInt,PetscInt,const PetscScalar*, void*); 104 105 PETSC_EXTERN PetscErrorCode DMPlexFilter(DM, DMLabel, PetscInt, DM *); 106 PETSC_EXTERN PetscErrorCode DMPlexGetCellNumbering(DM, IS *); 107 PETSC_EXTERN PetscErrorCode DMPlexGetVertexNumbering(DM, IS *); 108 PETSC_EXTERN PetscErrorCode DMPlexCreatePointNumbering(DM, IS *); 109 PETSC_EXTERN PetscErrorCode DMPlexCreateRankField(DM, Vec *); 110 PETSC_EXTERN PetscErrorCode DMPlexCreateLabelField(DM, DMLabel, Vec *); 111 112 PETSC_EXTERN PetscErrorCode DMPlexGetDepth(DM, PetscInt *); 113 PETSC_EXTERN PetscErrorCode DMPlexGetDepthLabel(DM, DMLabel *); 114 PETSC_EXTERN PetscErrorCode DMPlexGetDepthStratum(DM, PetscInt, PetscInt *, PetscInt *); 115 PETSC_EXTERN PetscErrorCode DMPlexGetHeightStratum(DM, PetscInt, PetscInt *, PetscInt *); 116 117 /* Topological Operations */ 118 PETSC_EXTERN PetscErrorCode DMPlexGetMeet(DM, PetscInt, const PetscInt [], PetscInt *, const PetscInt **); 119 PETSC_EXTERN PetscErrorCode DMPlexGetFullMeet(DM, PetscInt, const PetscInt [], PetscInt *, const PetscInt **); 120 PETSC_EXTERN PetscErrorCode DMPlexRestoreMeet(DM, PetscInt, const PetscInt [], PetscInt *, const PetscInt **); 121 PETSC_EXTERN PetscErrorCode DMPlexGetJoin(DM, PetscInt, const PetscInt [], PetscInt *, const PetscInt **); 122 PETSC_EXTERN PetscErrorCode DMPlexGetFullJoin(DM, PetscInt, const PetscInt [], PetscInt *, const PetscInt **); 123 PETSC_EXTERN PetscErrorCode DMPlexRestoreJoin(DM, PetscInt, const PetscInt [], PetscInt *, const PetscInt **); 124 PETSC_EXTERN PetscErrorCode DMPlexGetTransitiveClosure(DM, PetscInt, PetscBool, PetscInt *, PetscInt *[]); 125 PETSC_EXTERN PetscErrorCode DMPlexRestoreTransitiveClosure(DM, PetscInt, PetscBool, PetscInt *, PetscInt *[]); 126 127 /* Mesh Generation */ 128 PETSC_EXTERN PetscErrorCode DMPlexGenerate(DM, const char [], PetscBool , DM *); 129 PETSC_EXTERN PetscErrorCode DMPlexGenerateRegister(const char[],PetscErrorCode (*)(DM,PetscBool,DM*),PetscErrorCode (*)(DM,double*,DM*),PetscInt); 130 PETSC_EXTERN PetscErrorCode DMPlexGenerateRegisterAll(void); 131 PETSC_EXTERN PetscErrorCode DMPlexGenerateRegisterDestroy(void); 132 PETSC_EXTERN PetscErrorCode DMPlexCopyCoordinates(DM, DM); 133 PETSC_EXTERN PetscErrorCode DMPlexCreateDoublet(MPI_Comm, PetscInt, PetscBool, PetscBool, PetscBool, PetscReal, DM *); 134 PETSC_EXTERN PetscErrorCode DMPlexCreateSquareBoundary(DM, const PetscReal [], const PetscReal [], const PetscInt []); 135 PETSC_EXTERN PetscErrorCode DMPlexCreateCubeBoundary(DM, const PetscReal [], const PetscReal [], const PetscInt []); 136 PETSC_EXTERN PetscErrorCode DMPlexCreateBoxMesh(MPI_Comm, PetscInt, PetscBool, const PetscInt[], const PetscReal[], const PetscReal[], const DMBoundaryType[], PetscBool, DM *); 137 PETSC_EXTERN PetscErrorCode DMPlexCreateSphereMesh(MPI_Comm, PetscInt, PetscBool, DM *); 138 PETSC_EXTERN PetscErrorCode DMPlexCreateHexCylinderMesh(MPI_Comm, PetscInt, DMBoundaryType, DM *); 139 PETSC_EXTERN PetscErrorCode DMPlexCreateWedgeCylinderMesh(MPI_Comm, PetscInt, PetscBool, DM *); 140 PETSC_EXTERN PetscErrorCode DMPlexCreateWedgeBoxMesh(MPI_Comm, const PetscInt[], const PetscReal[], const PetscReal[], const DMBoundaryType[], PetscBool, PetscBool, DM *); 141 PETSC_EXTERN PetscErrorCode DMPlexExtrude(DM, PetscInt, PetscReal, PetscBool, PetscBool, DM *); 142 PETSC_EXTERN PetscErrorCode DMPlexCreateConeSection(DM, PetscSection *); 143 PETSC_EXTERN PetscErrorCode DMPlexInvertCell(PetscInt, PetscInt, int []); 144 145 PETSC_EXTERN PetscErrorCode DMPlexCheckSymmetry(DM); 146 PETSC_EXTERN PetscErrorCode DMPlexCheckSkeleton(DM, PetscBool, PetscInt); 147 PETSC_EXTERN PetscErrorCode DMPlexCheckFaces(DM, PetscBool, PetscInt); 148 PETSC_EXTERN PetscErrorCode DMPlexCheckGeometry(DM); 149 PETSC_EXTERN PetscErrorCode DMPlexCheckPointSF(DM); 150 PETSC_EXTERN PetscErrorCode DMPlexCheckConesConformOnInterfaces(DM); 151 PETSC_EXTERN PetscErrorCode DMPlexCheckCellShape(DM,PetscBool); 152 153 PETSC_EXTERN PetscErrorCode DMPlexTriangleSetOptions(DM, const char *); 154 PETSC_EXTERN PetscErrorCode DMPlexTetgenSetOptions(DM, const char *); 155 156 PETSC_EXTERN PetscErrorCode DMPlexCreateFromFile(MPI_Comm, const char[], PetscBool, DM *); 157 PETSC_EXTERN PetscErrorCode DMPlexCreateExodus(MPI_Comm, PetscInt, PetscBool, DM *); 158 PETSC_EXTERN PetscErrorCode DMPlexCreateExodusFromFile(MPI_Comm, const char [], PetscBool, DM *); 159 PETSC_EXTERN PetscErrorCode DMPlexCreateCGNS(MPI_Comm, PetscInt, PetscBool, DM *); 160 PETSC_EXTERN PetscErrorCode DMPlexCreateCGNSFromFile(MPI_Comm, const char[], PetscBool, DM *); 161 PETSC_EXTERN PetscErrorCode DMPlexCreateGmsh(MPI_Comm, PetscViewer, PetscBool, DM *); 162 PETSC_EXTERN PetscErrorCode DMPlexCreateGmshFromFile(MPI_Comm, const char [], PetscBool, DM *); 163 PETSC_EXTERN PetscErrorCode DMPlexCreateFluent(MPI_Comm, PetscViewer, PetscBool, DM *); 164 PETSC_EXTERN PetscErrorCode DMPlexCreateFluentFromFile(MPI_Comm, const char [], PetscBool, DM *); 165 PETSC_EXTERN PetscErrorCode DMPlexCreateMedFromFile(MPI_Comm, const char [], PetscBool, DM *); 166 PETSC_EXTERN PetscErrorCode DMPlexCreatePLYFromFile(MPI_Comm, const char [], PetscBool, DM *); 167 168 /* Mesh Partitioning and Distribution */ 169 PETSC_EXTERN PetscErrorCode DMPlexCreateNeighborCSR(DM, PetscInt, PetscInt *, PetscInt **, PetscInt **); 170 PETSC_EXTERN PetscErrorCode DMPlexGetPartitioner(DM, PetscPartitioner *); 171 PETSC_EXTERN PetscErrorCode DMPlexSetPartitioner(DM, PetscPartitioner); 172 PETSC_EXTERN PetscErrorCode DMPlexCreatePartition(DM, const char[], PetscInt, PetscBool, PetscSection *, IS *, PetscSection *, IS *); 173 PETSC_EXTERN PetscErrorCode DMPlexCreatePartitionerGraph(DM, PetscInt, PetscInt *, PetscInt **, PetscInt **, IS *); 174 PETSC_EXTERN PetscErrorCode DMPlexCreatePartitionClosure(DM, PetscSection, IS, PetscSection *, IS *); 175 PETSC_EXTERN PetscErrorCode DMPlexPartitionLabelInvert(DM, DMLabel, PetscSF, DMLabel); 176 PETSC_EXTERN PetscErrorCode DMPlexPartitionLabelClosure(DM, DMLabel); 177 PETSC_EXTERN PetscErrorCode DMPlexPartitionLabelAdjacency(DM, DMLabel); 178 PETSC_EXTERN PetscErrorCode DMPlexPartitionLabelPropagate(DM, DMLabel); 179 PETSC_EXTERN PetscErrorCode DMPlexPartitionLabelCreateSF(DM, DMLabel, PetscSF *); 180 PETSC_EXTERN PetscErrorCode DMPlexSetPartitionBalance(DM, PetscBool); 181 PETSC_EXTERN PetscErrorCode DMPlexGetPartitionBalance(DM, PetscBool *); 182 PETSC_EXTERN PetscErrorCode DMPlexDistribute(DM, PetscInt, PetscSF*, DM*); 183 PETSC_EXTERN PetscErrorCode DMPlexDistributeOverlap(DM, PetscInt, PetscSF *, DM *); 184 PETSC_EXTERN PetscErrorCode DMPlexDistributeField(DM,PetscSF,PetscSection,Vec,PetscSection,Vec); 185 PETSC_EXTERN PetscErrorCode DMPlexDistributeFieldIS(DM, PetscSF, PetscSection, IS, PetscSection, IS *); 186 PETSC_EXTERN PetscErrorCode DMPlexDistributeData(DM,PetscSF,PetscSection,MPI_Datatype,void*,PetscSection,void**); 187 PETSC_EXTERN PetscErrorCode DMPlexMigrate(DM, PetscSF, DM); 188 PETSC_EXTERN PetscErrorCode DMPlexGetGatherDM(DM, PetscSF*, DM*); 189 PETSC_EXTERN PetscErrorCode DMPlexGetRedundantDM(DM, PetscSF*, DM*); 190 PETSC_EXTERN PetscErrorCode DMPlexSetAdjacencyUser(DM, PetscErrorCode (*)(DM,PetscInt,PetscInt*,PetscInt[],void*),void*); 191 PETSC_EXTERN PetscErrorCode DMPlexGetAdjacencyUser(DM, PetscErrorCode (**)(DM,PetscInt,PetscInt*,PetscInt[],void*),void**); 192 PETSC_EXTERN PetscErrorCode DMPlexSetAdjacencyUseCone(DM,PetscBool); 193 PETSC_EXTERN PetscErrorCode DMPlexGetAdjacencyUseCone(DM,PetscBool*); 194 PETSC_EXTERN PetscErrorCode DMPlexSetAdjacencyUseClosure(DM,PetscBool); 195 PETSC_EXTERN PetscErrorCode DMPlexGetAdjacencyUseClosure(DM,PetscBool*); 196 PETSC_EXTERN PetscErrorCode DMPlexSetAdjacencyUseAnchors(DM,PetscBool); 197 PETSC_EXTERN PetscErrorCode DMPlexGetAdjacencyUseAnchors(DM,PetscBool*); 198 PETSC_EXTERN PetscErrorCode DMPlexGetAdjacency(DM, PetscInt, PetscInt *, PetscInt *[]); 199 PETSC_EXTERN PetscErrorCode DMPlexSetMigrationSF(DM, PetscSF); 200 PETSC_EXTERN PetscErrorCode DMPlexGetMigrationSF(DM, PetscSF *); 201 202 PETSC_EXTERN PetscErrorCode DMPlexGetOrdering(DM, MatOrderingType, DMLabel, IS *); 203 PETSC_EXTERN PetscErrorCode DMPlexPermute(DM, IS, DM *); 204 205 PETSC_EXTERN PetscErrorCode DMPlexCreateProcessSF(DM, PetscSF, IS *, PetscSF *); 206 PETSC_EXTERN PetscErrorCode DMPlexCreateTwoSidedProcessSF(DM, PetscSF, PetscSection, IS, PetscSection, IS, IS *, PetscSF *); 207 PETSC_EXTERN PetscErrorCode DMPlexDistributeOwnership(DM, PetscSection, IS *, PetscSection, IS *); 208 PETSC_EXTERN PetscErrorCode DMPlexCreateOverlap(DM, PetscInt, PetscSection, IS, PetscSection, IS, DMLabel *); 209 PETSC_EXTERN PetscErrorCode DMPlexCreateOverlapMigrationSF(DM, PetscSF, PetscSF *); 210 PETSC_EXTERN PetscErrorCode DMPlexStratifyMigrationSF(DM, PetscSF, PetscSF *); 211 212 /* Submesh Support */ 213 PETSC_EXTERN PetscErrorCode DMPlexCreateSubmesh(DM, DMLabel, PetscInt, PetscBool, DM*); 214 PETSC_EXTERN PetscErrorCode DMPlexCreateHybridMesh(DM, DMLabel, DMLabel, DMLabel *, DMLabel *, DM *, DM *); 215 PETSC_EXTERN PetscErrorCode DMPlexGetSubpointMap(DM, DMLabel*); 216 PETSC_EXTERN PetscErrorCode DMPlexSetSubpointMap(DM, DMLabel); 217 PETSC_EXTERN PetscErrorCode DMPlexCreateSubpointIS(DM, IS *); 218 PETSC_EXTERN PetscErrorCode DMPlexGetSubpoint(DM, PetscInt, PetscInt *); 219 PETSC_EXTERN PetscErrorCode DMPlexGetAuxiliaryPoint(DM, DM, PetscInt, PetscInt *); 220 221 PETSC_EXTERN PetscErrorCode DMPlexLabelComplete(DM, DMLabel); 222 PETSC_EXTERN PetscErrorCode DMPlexLabelCohesiveComplete(DM, DMLabel, DMLabel, PetscBool, DM); 223 PETSC_EXTERN PetscErrorCode DMPlexLabelAddCells(DM, DMLabel); 224 PETSC_EXTERN PetscErrorCode DMPlexLabelClearCells(DM, DMLabel); 225 226 PETSC_EXTERN PetscErrorCode DMPlexGetRefinementLimit(DM, PetscReal *); 227 PETSC_EXTERN PetscErrorCode DMPlexSetRefinementLimit(DM, PetscReal); 228 PETSC_EXTERN PetscErrorCode DMPlexGetRefinementUniform(DM, PetscBool *); 229 PETSC_EXTERN PetscErrorCode DMPlexSetRefinementUniform(DM, PetscBool); 230 PETSC_EXTERN PetscErrorCode DMPlexGetRefinementFunction(DM, PetscErrorCode (**)(const PetscReal [], PetscReal *)); 231 PETSC_EXTERN PetscErrorCode DMPlexSetRefinementFunction(DM, PetscErrorCode (*)(const PetscReal [], PetscReal *)); 232 PETSC_EXTERN PetscErrorCode DMPlexCreateCoarsePointIS(DM, IS *); 233 PETSC_EXTERN PetscErrorCode DMPlexGetRegularRefinement(DM, PetscBool *); 234 PETSC_EXTERN PetscErrorCode DMPlexSetRegularRefinement(DM, PetscBool); 235 PETSC_EXTERN PetscErrorCode DMPlexRefineSimplexToTensor(DM, DM*); 236 237 /* Support for cell-vertex meshes */ 238 PETSC_EXTERN PetscErrorCode DMPlexGetNumFaceVertices(DM, PetscInt, PetscInt, PetscInt *); 239 PETSC_EXTERN PetscErrorCode DMPlexGetOrientedFace(DM, PetscInt, PetscInt, const PetscInt [], PetscInt, PetscInt [], PetscInt [], PetscInt [], PetscBool *); 240 241 /* Geometry Support */ 242 PETSC_EXTERN PetscErrorCode DMPlexGetMinRadius(DM, PetscReal *); 243 PETSC_EXTERN PetscErrorCode DMPlexSetMinRadius(DM, PetscReal); 244 PETSC_EXTERN PetscErrorCode DMPlexComputeProjection2Dto1D(PetscScalar[], PetscReal[]); 245 PETSC_EXTERN PetscErrorCode DMPlexComputeProjection3Dto1D(PetscScalar[], PetscReal[]); 246 PETSC_EXTERN PetscErrorCode DMPlexComputeProjection3Dto2D(PetscInt, PetscScalar[], PetscReal[]); 247 248 /* Point Location */ 249 typedef struct _PetscGridHash *PetscGridHash; 250 PETSC_EXTERN PetscErrorCode PetscGridHashCreate(MPI_Comm, PetscInt, const PetscScalar[], PetscGridHash *); 251 PETSC_EXTERN PetscErrorCode PetscGridHashEnlarge(PetscGridHash, const PetscScalar []); 252 PETSC_EXTERN PetscErrorCode PetscGridHashSetGrid(PetscGridHash, const PetscInt [], const PetscReal []); 253 PETSC_EXTERN PetscErrorCode PetscGridHashGetEnclosingBox(PetscGridHash, PetscInt, const PetscScalar [], PetscInt [], PetscInt []); 254 PETSC_EXTERN PetscErrorCode PetscGridHashDestroy(PetscGridHash *); 255 256 /* FVM Support */ 257 PETSC_EXTERN PetscErrorCode DMPlexComputeCellGeometryFVM(DM, PetscInt, PetscReal *, PetscReal [], PetscReal []); 258 PETSC_EXTERN PetscErrorCode DMPlexComputeGeometryFVM(DM, Vec *, Vec *); 259 PETSC_EXTERN PetscErrorCode DMPlexComputeGradientFVM(DM, PetscFV, Vec, Vec, DM *); 260 PETSC_EXTERN PetscErrorCode DMPlexGetDataFVM(DM, PetscFV, Vec *, Vec *, DM *); 261 262 /* FEM Support */ 263 PETSC_EXTERN PetscErrorCode DMPlexComputeGeometryFEM(DM, Vec *); 264 PETSC_EXTERN PetscErrorCode DMPlexInsertBoundaryValues(DM, PetscBool, Vec, PetscReal, Vec, Vec, Vec); 265 PETSC_EXTERN PetscErrorCode DMPlexInsertBoundaryValuesEssential(DM, PetscReal, PetscInt, PetscInt, const PetscInt[], DMLabel, PetscInt, const PetscInt[], 266 PetscErrorCode (*)(PetscInt, PetscReal, const PetscReal[], PetscInt, PetscScalar *, void *), void *, Vec ); 267 PETSC_EXTERN PetscErrorCode DMPlexInsertBoundaryValuesEssentialField(DM, PetscReal, Vec, PetscInt, PetscInt, const PetscInt[], DMLabel, PetscInt, const PetscInt [], 268 void (*)(PetscInt, PetscInt, PetscInt, 269 const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], 270 const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], 271 PetscReal, const PetscReal[], PetscInt, const PetscScalar[], 272 PetscScalar[]), 273 void *, Vec); 274 PETSC_EXTERN PetscErrorCode DMPlexInsertBoundaryValuesRiemann(DM, PetscReal, Vec, Vec, Vec, PetscInt, PetscInt, const PetscInt[], DMLabel, PetscInt, const PetscInt [], 275 PetscErrorCode (*)(PetscReal,const PetscReal*,const PetscReal*,const PetscScalar*,PetscScalar*,void*), void *, Vec); 276 PETSC_EXTERN PetscErrorCode DMPlexMarkBoundaryFaces(DM, PetscInt, DMLabel); 277 278 PETSC_EXTERN PetscErrorCode DMPlexCreateSection(DM, DMLabel [], const PetscInt [], const PetscInt [], PetscInt, const PetscInt [], const IS [], const IS [], IS, PetscSection *); 279 PETSC_EXTERN PetscErrorCode DMPlexGetSubdomainSection(DM, PetscSection*); 280 281 PETSC_EXTERN PetscErrorCode DMPlexComputeCellGeometryAffineFEM(DM, PetscInt, PetscReal *, PetscReal *, PetscReal *, PetscReal *); 282 PETSC_EXTERN PetscErrorCode DMPlexComputeCellGeometryFEM(DM, PetscInt, PetscQuadrature, PetscReal *, PetscReal *, PetscReal *, PetscReal *); 283 PETSC_EXTERN PetscErrorCode DMPlexCoordinatesToReference(DM, PetscInt, PetscInt, const PetscReal [], PetscReal[]); 284 PETSC_EXTERN PetscErrorCode DMPlexReferenceToCoordinates(DM, PetscInt, PetscInt, const PetscReal [], PetscReal[]); 285 286 PETSC_EXTERN PetscErrorCode DMPlexVecGetClosure(DM, PetscSection, Vec, PetscInt, PetscInt *, PetscScalar *[]); 287 PETSC_EXTERN PetscErrorCode DMPlexVecRestoreClosure(DM, PetscSection, Vec, PetscInt, PetscInt *, PetscScalar *[]); 288 PETSC_EXTERN PetscErrorCode DMPlexVecSetClosure(DM, PetscSection, Vec, PetscInt, const PetscScalar[], InsertMode); 289 PETSC_EXTERN PetscErrorCode DMPlexMatSetClosure(DM, PetscSection, PetscSection, Mat, PetscInt, const PetscScalar[], InsertMode); 290 PETSC_EXTERN PetscErrorCode DMPlexGetClosureIndices(DM, PetscSection, PetscSection, PetscInt, PetscInt *, PetscInt **, PetscInt *); 291 PETSC_EXTERN PetscErrorCode DMPlexRestoreClosureIndices(DM, PetscSection, PetscSection, PetscInt, PetscInt *, PetscInt **,PetscInt *); 292 PETSC_EXTERN PetscErrorCode DMPlexMatSetClosureRefined(DM, PetscSection, PetscSection, DM, PetscSection, PetscSection, Mat, PetscInt, const PetscScalar[], InsertMode); 293 PETSC_EXTERN PetscErrorCode DMPlexMatGetClosureIndicesRefined(DM, PetscSection, PetscSection, DM, PetscSection, PetscSection, PetscInt, PetscInt[], PetscInt[]); 294 PETSC_EXTERN PetscErrorCode DMPlexCreateClosureIndex(DM, PetscSection); 295 PETSC_EXTERN PetscErrorCode DMPlexCreateSpectralClosurePermutation(DM, PetscInt, PetscSection); 296 297 PETSC_EXTERN PetscErrorCode DMPlexConstructGhostCells(DM, const char [], PetscInt *, DM *); 298 PETSC_EXTERN PetscErrorCode DMPlexConstructCohesiveCells(DM, DMLabel, DMLabel, DM *); 299 300 PETSC_EXTERN PetscErrorCode DMPlexGetHybridBounds(DM, PetscInt *, PetscInt *, PetscInt *, PetscInt *); 301 PETSC_EXTERN PetscErrorCode DMPlexSetHybridBounds(DM, PetscInt, PetscInt, PetscInt, PetscInt); 302 PETSC_EXTERN PetscErrorCode DMPlexGetVTKCellHeight(DM, PetscInt *); 303 PETSC_EXTERN PetscErrorCode DMPlexSetVTKCellHeight(DM, PetscInt); 304 PETSC_EXTERN PetscErrorCode DMPlexVTKWriteAll(PetscObject, PetscViewer); 305 306 PETSC_EXTERN PetscErrorCode DMPlexGetScale(DM, PetscUnit, PetscReal *); 307 PETSC_EXTERN PetscErrorCode DMPlexSetScale(DM, PetscUnit, PetscReal); 308 309 typedef struct { 310 DM dm; 311 Vec u; /* The base vector for the Jacbobian action J(u) x */ 312 Mat J; /* Preconditioner for testing */ 313 void *user; 314 } JacActionCtx; 315 316 PETSC_EXTERN PetscErrorCode DMPlexInsertBoundaryValuesFEM(DM, Vec); 317 PETSC_EXTERN PetscErrorCode DMPlexSetMaxProjectionHeight(DM, PetscInt); 318 PETSC_EXTERN PetscErrorCode DMPlexGetMaxProjectionHeight(DM, PetscInt*); 319 PETSC_EXTERN PetscErrorCode DMPlexProjectFieldLocal(DM, Vec, 320 void (**)(PetscInt, PetscInt, PetscInt, 321 const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], 322 const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], 323 PetscReal, const PetscReal [], PetscScalar []), InsertMode, Vec); 324 PETSC_EXTERN PetscErrorCode DMPlexComputeL2DiffLocal(DM, PetscReal, PetscErrorCode (**)(PetscInt, PetscReal, const PetscReal [], PetscInt, PetscScalar *, void *), void **, Vec, PetscReal *); 325 PETSC_EXTERN PetscErrorCode DMPlexComputeL2FieldDiff(DM, PetscReal, PetscErrorCode (**)(PetscInt, PetscReal, const PetscReal [], PetscInt, PetscScalar *, void *), void **, Vec, PetscReal[]); 326 PETSC_EXTERN PetscErrorCode DMPlexComputeL2DiffVec(DM, PetscReal, PetscErrorCode (**)(PetscInt, PetscReal, const PetscReal [], PetscInt, PetscScalar *, void *), void **, Vec, Vec); 327 PETSC_EXTERN PetscErrorCode DMPlexComputeCellwiseIntegralFEM(DM, Vec, Vec, void *); 328 PETSC_EXTERN PetscErrorCode DMPlexComputeIntegralFEM(DM, Vec, PetscScalar *, void *); 329 PETSC_EXTERN PetscErrorCode DMPlexComputeBdIntegral(DM, Vec, DMLabel, PetscInt, const PetscInt[], 330 void (*)(PetscInt, PetscInt, PetscInt, 331 const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], 332 const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], 333 PetscReal, const PetscReal[], const PetscReal[], PetscInt, const PetscScalar[], PetscScalar[]), 334 PetscScalar *, void *); 335 PETSC_EXTERN PetscErrorCode DMPlexComputeInterpolatorNested(DM, DM, Mat, void *); 336 PETSC_EXTERN PetscErrorCode DMPlexComputeInterpolatorGeneral(DM, DM, Mat, void *); 337 PETSC_EXTERN PetscErrorCode DMPlexComputeGradientClementInterpolant(DM, Vec, Vec); 338 PETSC_EXTERN PetscErrorCode DMPlexComputeInjectorFEM(DM, DM, VecScatter *, void *); 339 PETSC_EXTERN PetscErrorCode DMPlexComputeMassMatrixNested(DM, DM, Mat, void *); 340 PETSC_EXTERN PetscErrorCode DMPlexComputeMassMatrixGeneral(DM, DM, Mat, void *); 341 342 PETSC_EXTERN PetscErrorCode DMPlexCreateRigidBody(DM, MatNullSpace *); 343 PETSC_EXTERN PetscErrorCode DMPlexCreateRigidBodies(DM, PetscInt, DMLabel, const PetscInt[], const PetscInt[], MatNullSpace *); 344 345 PETSC_EXTERN PetscErrorCode DMPlexSetSNESLocalFEM(DM,void *,void *,void *); 346 PETSC_EXTERN PetscErrorCode DMPlexSNESComputeBoundaryFEM(DM, Vec, void *); 347 PETSC_EXTERN PetscErrorCode DMPlexSNESComputeResidualFEM(DM, Vec, Vec, void *); 348 PETSC_EXTERN PetscErrorCode DMPlexSNESComputeJacobianFEM(DM, Vec, Mat, Mat, void *); 349 PETSC_EXTERN PetscErrorCode DMPlexComputeJacobianAction(DM, IS, PetscReal, PetscReal, Vec, Vec, Vec, Vec, void *); 350 PETSC_EXTERN PetscErrorCode DMPlexComputeBdResidualSingle(DM, PetscReal, DMLabel, PetscInt, const PetscInt[], PetscInt, Vec, Vec, Vec); 351 PETSC_EXTERN PetscErrorCode DMPlexComputeBdJacobianSingle(DM, PetscReal, DMLabel, PetscInt, const PetscInt[], PetscInt, Vec, Vec, PetscReal, Mat, Mat); 352 353 PETSC_EXTERN PetscErrorCode DMPlexTSComputeBoundary(DM, PetscReal, Vec, Vec, void *); 354 PETSC_EXTERN PetscErrorCode DMPlexTSComputeRHSFunctionFVM(DM, PetscReal, Vec, Vec, void *); 355 PETSC_EXTERN PetscErrorCode DMPlexTSComputeIFunctionFEM(DM, PetscReal, Vec, Vec, Vec, void *); 356 PETSC_EXTERN PetscErrorCode DMPlexTSComputeIJacobianFEM(DM, PetscReal, Vec, Vec, PetscReal, Mat, Mat, void *); 357 358 PETSC_EXTERN PetscErrorCode DMPlexComputeRHSFunctionFVM(DM, PetscReal, Vec, Vec, void *); 359 PETSC_EXTERN PetscErrorCode DMPlexReconstructGradientsFVM(DM,Vec,Vec); 360 361 /* anchors */ 362 PETSC_EXTERN PetscErrorCode DMPlexGetAnchors(DM, PetscSection*, IS*); 363 PETSC_EXTERN PetscErrorCode DMPlexSetAnchors(DM, PetscSection, IS); 364 /* tree */ 365 PETSC_EXTERN PetscErrorCode DMPlexSetReferenceTree(DM, DM); 366 PETSC_EXTERN PetscErrorCode DMPlexGetReferenceTree(DM, DM*); 367 PETSC_EXTERN PetscErrorCode DMPlexReferenceTreeGetChildSymmetry(DM, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt *, PetscInt *); 368 PETSC_EXTERN PetscErrorCode DMPlexCreateDefaultReferenceTree(MPI_Comm, PetscInt, PetscBool, DM*); 369 PETSC_EXTERN PetscErrorCode DMPlexSetTree(DM, PetscSection, PetscInt [], PetscInt []); 370 PETSC_EXTERN PetscErrorCode DMPlexGetTree(DM, PetscSection *, PetscInt *[], PetscInt *[], PetscSection *, PetscInt *[]); 371 PETSC_EXTERN PetscErrorCode DMPlexGetTreeParent(DM, PetscInt, PetscInt *, PetscInt *); 372 PETSC_EXTERN PetscErrorCode DMPlexGetTreeChildren(DM, PetscInt, PetscInt *, const PetscInt *[]); 373 PETSC_EXTERN PetscErrorCode DMPlexTreeRefineCell(DM, PetscInt, DM *); 374 PETSC_EXTERN PetscErrorCode DMPlexComputeInjectorReferenceTree(DM, Mat *); 375 PETSC_EXTERN PetscErrorCode DMPlexTransferVecTree(DM,Vec,DM,Vec,PetscSF,PetscSF,PetscInt *,PetscInt *,PetscBool,PetscReal); 376 377 /* natural order */ 378 PETSC_EXTERN PetscErrorCode DMPlexCreateGlobalToNaturalSF(DM, PetscSection, PetscSF, PetscSF *); 379 PETSC_EXTERN PetscErrorCode DMPlexSetGlobalToNaturalSF(DM, PetscSF); 380 PETSC_EXTERN PetscErrorCode DMPlexGetGlobalToNaturalSF(DM, PetscSF *); 381 PETSC_EXTERN PetscErrorCode DMPlexGlobalToNaturalBegin(DM, Vec, Vec); 382 PETSC_EXTERN PetscErrorCode DMPlexGlobalToNaturalEnd(DM, Vec, Vec); 383 PETSC_EXTERN PetscErrorCode DMPlexNaturalToGlobalBegin(DM, Vec, Vec); 384 PETSC_EXTERN PetscErrorCode DMPlexNaturalToGlobalEnd(DM, Vec, Vec); 385 386 /* mesh adaptation */ 387 PETSC_EXTERN PetscErrorCode DMPlexAdapt(DM, Vec, const char [], DM *); 388 #endif 389