1 /* 2 DMPlex, for parallel unstructured distributed mesh problems. 3 */ 4 #if !defined(__PETSCDMPLEX_H) 5 #define __PETSCDMPLEX_H 6 7 #include <petscdm.h> 8 #include <petscdt.h> 9 #include <petscfe.h> 10 #include <petscfv.h> 11 #include <petscsftypes.h> 12 13 PETSC_EXTERN PetscClassId PETSCPARTITIONER_CLASSID; 14 15 /*J 16 PetscPartitionerType - String with the name of a PETSc graph partitioner 17 18 Level: beginner 19 20 .seealso: PetscPartitionerSetType(), PetscPartitioner 21 J*/ 22 typedef const char *PetscPartitionerType; 23 #define PETSCPARTITIONERCHACO "chaco" 24 #define PETSCPARTITIONERPARMETIS "parmetis" 25 #define PETSCPARTITIONERSHELL "shell" 26 #define PETSCPARTITIONERSIMPLE "simple" 27 28 PETSC_EXTERN PetscFunctionList PetscPartitionerList; 29 PETSC_EXTERN PetscBool PetscPartitionerRegisterAllCalled; 30 PETSC_EXTERN PetscErrorCode PetscPartitionerCreate(MPI_Comm, PetscPartitioner *); 31 PETSC_EXTERN PetscErrorCode PetscPartitionerDestroy(PetscPartitioner *); 32 PETSC_EXTERN PetscErrorCode PetscPartitionerSetType(PetscPartitioner, PetscPartitionerType); 33 PETSC_EXTERN PetscErrorCode PetscPartitionerGetType(PetscPartitioner, PetscPartitionerType *); 34 PETSC_EXTERN PetscErrorCode PetscPartitionerSetUp(PetscPartitioner); 35 PETSC_EXTERN PetscErrorCode PetscPartitionerSetFromOptions(PetscPartitioner); 36 PETSC_EXTERN PetscErrorCode PetscPartitionerViewFromOptions(PetscPartitioner, const char[], const char[]); 37 PETSC_EXTERN PetscErrorCode PetscPartitionerView(PetscPartitioner, PetscViewer); 38 PETSC_EXTERN PetscErrorCode PetscPartitionerRegister(const char [], PetscErrorCode (*)(PetscPartitioner)); 39 PETSC_EXTERN PetscErrorCode PetscPartitionerRegisterAll(void); 40 PETSC_EXTERN PetscErrorCode PetscPartitionerRegisterDestroy(void); 41 42 PETSC_EXTERN PetscErrorCode PetscPartitionerPartition(PetscPartitioner, DM, PetscSection, IS *); 43 44 PETSC_EXTERN PetscErrorCode PetscPartitionerShellSetPartition(PetscPartitioner, PetscInt, const PetscInt[], const PetscInt[]); 45 46 PETSC_EXTERN PetscErrorCode DMPlexCreate(MPI_Comm, DM*); 47 PETSC_EXTERN PetscErrorCode DMPlexCreateCohesiveSubmesh(DM, PetscBool, const char [], PetscInt, DM *); 48 PETSC_EXTERN PetscErrorCode DMPlexCreateFromCellList(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscBool, const int[], PetscInt, const double[], DM*); 49 PETSC_EXTERN PetscErrorCode DMPlexCreateFromDAG(DM, PetscInt, const PetscInt [], const PetscInt [], const PetscInt [], const PetscInt [], const PetscScalar []); 50 PETSC_EXTERN PetscErrorCode DMPlexCreateReferenceCell(MPI_Comm, PetscInt, PetscBool, DM*); 51 PETSC_EXTERN PetscErrorCode DMPlexGetChart(DM, PetscInt *, PetscInt *); 52 PETSC_EXTERN PetscErrorCode DMPlexSetChart(DM, PetscInt, PetscInt); 53 PETSC_EXTERN PetscErrorCode DMPlexGetConeSize(DM, PetscInt, PetscInt *); 54 PETSC_EXTERN PetscErrorCode DMPlexSetConeSize(DM, PetscInt, PetscInt); 55 PETSC_EXTERN PetscErrorCode DMPlexAddConeSize(DM, PetscInt, PetscInt); 56 PETSC_EXTERN PetscErrorCode DMPlexGetCone(DM, PetscInt, const PetscInt *[]); 57 PETSC_EXTERN PetscErrorCode DMPlexSetCone(DM, PetscInt, const PetscInt[]); 58 PETSC_EXTERN PetscErrorCode DMPlexInsertCone(DM, PetscInt, PetscInt, PetscInt); 59 PETSC_EXTERN PetscErrorCode DMPlexInsertConeOrientation(DM, PetscInt, PetscInt, PetscInt); 60 PETSC_EXTERN PetscErrorCode DMPlexGetConeOrientation(DM, PetscInt, const PetscInt *[]); 61 PETSC_EXTERN PetscErrorCode DMPlexSetConeOrientation(DM, PetscInt, const PetscInt[]); 62 PETSC_EXTERN PetscErrorCode DMPlexGetSupportSize(DM, PetscInt, PetscInt *); 63 PETSC_EXTERN PetscErrorCode DMPlexSetSupportSize(DM, PetscInt, PetscInt); 64 PETSC_EXTERN PetscErrorCode DMPlexGetSupport(DM, PetscInt, const PetscInt *[]); 65 PETSC_EXTERN PetscErrorCode DMPlexSetSupport(DM, PetscInt, const PetscInt[]); 66 PETSC_EXTERN PetscErrorCode DMPlexInsertSupport(DM, PetscInt, PetscInt, PetscInt); 67 PETSC_EXTERN PetscErrorCode DMPlexGetConeSection(DM, PetscSection *); 68 PETSC_EXTERN PetscErrorCode DMPlexGetSupportSection(DM, PetscSection *); 69 PETSC_EXTERN PetscErrorCode DMPlexGetCones(DM, PetscInt *[]); 70 PETSC_EXTERN PetscErrorCode DMPlexGetConeOrientations(DM, PetscInt *[]); 71 PETSC_EXTERN PetscErrorCode DMPlexGetMaxSizes(DM, PetscInt *, PetscInt *); 72 PETSC_EXTERN PetscErrorCode DMPlexSymmetrize(DM); 73 PETSC_EXTERN PetscErrorCode DMPlexStratify(DM); 74 PETSC_EXTERN PetscErrorCode DMPlexEqual(DM,DM,PetscBool*); 75 PETSC_EXTERN PetscErrorCode DMPlexReverseCell(DM, PetscInt); 76 PETSC_EXTERN PetscErrorCode DMPlexOrient(DM); 77 PETSC_EXTERN PetscErrorCode DMPlexInterpolate(DM, DM *); 78 PETSC_EXTERN PetscErrorCode DMPlexUninterpolate(DM, DM *); 79 PETSC_EXTERN PetscErrorCode DMPlexLoad(PetscViewer, DM); 80 PETSC_EXTERN PetscErrorCode DMPlexPreallocateOperator(DM, PetscInt, PetscSection, PetscSection, PetscInt[], PetscInt[], PetscInt[], PetscInt[], Mat, PetscBool); 81 PETSC_EXTERN PetscErrorCode DMPlexGetPointLocal(DM,PetscInt,PetscInt*,PetscInt*); 82 PETSC_EXTERN PetscErrorCode DMPlexPointLocalRef(DM,PetscInt,PetscScalar*,void*); 83 PETSC_EXTERN PetscErrorCode DMPlexPointLocalFieldRef(DM,PetscInt,PetscInt,PetscScalar*,void*); 84 PETSC_EXTERN PetscErrorCode DMPlexPointLocalRead(DM,PetscInt,const PetscScalar*,const void*); 85 PETSC_EXTERN PetscErrorCode DMPlexPointLocalFieldRead(DM,PetscInt,PetscInt,const PetscScalar*,const void*); 86 PETSC_EXTERN PetscErrorCode DMPlexGetPointGlobal(DM,PetscInt,PetscInt*,PetscInt*); 87 PETSC_EXTERN PetscErrorCode DMPlexPointGlobalRef(DM,PetscInt,PetscScalar*,void*); 88 PETSC_EXTERN PetscErrorCode DMPlexPointGlobalFieldRef(DM,PetscInt,PetscInt,PetscScalar*,void*); 89 PETSC_EXTERN PetscErrorCode DMPlexPointGlobalRead(DM,PetscInt,const PetscScalar*,const void*); 90 PETSC_EXTERN PetscErrorCode DMPlexPointGlobalFieldRead(DM,PetscInt,PetscInt,const PetscScalar*,const void*); 91 92 /*S 93 DMLabel - Object which encapsulates a subset of the mesh from this DM 94 95 Level: developer 96 97 Concepts: grids, grid refinement 98 99 .seealso: DM, DMPlexCreate(), DMPlexCreateLabel() 100 S*/ 101 typedef struct _n_DMLabel *DMLabel; 102 PETSC_EXTERN PetscErrorCode DMLabelCreate(const char [], DMLabel *); 103 PETSC_EXTERN PetscErrorCode DMLabelView(DMLabel, PetscViewer); 104 PETSC_EXTERN PetscErrorCode DMLabelDestroy(DMLabel *); 105 PETSC_EXTERN PetscErrorCode DMLabelDuplicate(DMLabel, DMLabel *); 106 PETSC_EXTERN PetscErrorCode DMLabelGetName(DMLabel, const char **); 107 PETSC_EXTERN PetscErrorCode DMLabelGetValue(DMLabel, PetscInt, PetscInt *); 108 PETSC_EXTERN PetscErrorCode DMLabelSetValue(DMLabel, PetscInt, PetscInt); 109 PETSC_EXTERN PetscErrorCode DMLabelClearValue(DMLabel, PetscInt, PetscInt); 110 PETSC_EXTERN PetscErrorCode DMLabelGetNumValues(DMLabel, PetscInt *); 111 PETSC_EXTERN PetscErrorCode DMLabelGetStratumBounds(DMLabel, PetscInt, PetscInt *, PetscInt *); 112 PETSC_EXTERN PetscErrorCode DMLabelGetValueIS(DMLabel, IS *); 113 PETSC_EXTERN PetscErrorCode DMLabelStratumHasPoint(DMLabel, PetscInt, PetscInt, PetscBool *); 114 PETSC_EXTERN PetscErrorCode DMLabelGetStratumSize(DMLabel, PetscInt, PetscInt *); 115 PETSC_EXTERN PetscErrorCode DMLabelGetStratumIS(DMLabel, PetscInt, IS *); 116 PETSC_EXTERN PetscErrorCode DMLabelClearStratum(DMLabel, PetscInt); 117 PETSC_EXTERN PetscErrorCode DMLabelCreateIndex(DMLabel, PetscInt, PetscInt); 118 PETSC_EXTERN PetscErrorCode DMLabelDestroyIndex(DMLabel); 119 PETSC_EXTERN PetscErrorCode DMLabelHasValue(DMLabel, PetscInt, PetscBool *); 120 PETSC_EXTERN PetscErrorCode DMLabelHasPoint(DMLabel, PetscInt, PetscBool *); 121 PETSC_EXTERN PetscErrorCode DMLabelFilter(DMLabel, PetscInt, PetscInt); 122 PETSC_EXTERN PetscErrorCode DMLabelPermute(DMLabel, IS, DMLabel *); 123 PETSC_EXTERN PetscErrorCode DMLabelDistribute(DMLabel, PetscSF, DMLabel *); 124 125 PETSC_EXTERN PetscErrorCode DMPlexCreateLabel(DM, const char []); 126 PETSC_EXTERN PetscErrorCode DMPlexGetLabelValue(DM, const char[], PetscInt, PetscInt *); 127 PETSC_EXTERN PetscErrorCode DMPlexSetLabelValue(DM, const char[], PetscInt, PetscInt); 128 PETSC_EXTERN PetscErrorCode DMPlexClearLabelValue(DM, const char[], PetscInt, PetscInt); 129 PETSC_EXTERN PetscErrorCode DMPlexGetLabelSize(DM, const char[], PetscInt *); 130 PETSC_EXTERN PetscErrorCode DMPlexGetLabelIdIS(DM, const char[], IS *); 131 PETSC_EXTERN PetscErrorCode DMPlexGetStratumSize(DM, const char [], PetscInt, PetscInt *); 132 PETSC_EXTERN PetscErrorCode DMPlexGetStratumIS(DM, const char [], PetscInt, IS *); 133 PETSC_EXTERN PetscErrorCode DMPlexClearLabelStratum(DM, const char[], PetscInt); 134 PETSC_EXTERN PetscErrorCode DMPlexGetLabelOutput(DM, const char[], PetscBool *); 135 PETSC_EXTERN PetscErrorCode DMPlexSetLabelOutput(DM, const char[], PetscBool); 136 PETSC_EXTERN PetscErrorCode PetscSectionCreateGlobalSectionLabel(PetscSection, PetscSF, PetscBool, DMLabel, PetscInt, PetscSection *); 137 138 PETSC_EXTERN PetscErrorCode DMPlexGetNumLabels(DM, PetscInt *); 139 PETSC_EXTERN PetscErrorCode DMPlexGetLabelName(DM, PetscInt, const char **); 140 PETSC_EXTERN PetscErrorCode DMPlexHasLabel(DM, const char [], PetscBool *); 141 PETSC_EXTERN PetscErrorCode DMPlexGetLabel(DM, const char *, DMLabel *); 142 PETSC_EXTERN PetscErrorCode DMPlexGetLabelByNum(DM, PetscInt, DMLabel *); 143 PETSC_EXTERN PetscErrorCode DMPlexAddLabel(DM, DMLabel); 144 PETSC_EXTERN PetscErrorCode DMPlexRemoveLabel(DM, const char [], DMLabel *); 145 PETSC_EXTERN PetscErrorCode DMPlexGetCellNumbering(DM, IS *); 146 PETSC_EXTERN PetscErrorCode DMPlexGetVertexNumbering(DM, IS *); 147 PETSC_EXTERN PetscErrorCode DMPlexCreatePointNumbering(DM, IS *); 148 149 PETSC_EXTERN PetscErrorCode DMPlexGetDepth(DM, PetscInt *); 150 PETSC_EXTERN PetscErrorCode DMPlexGetDepthLabel(DM, DMLabel *); 151 PETSC_EXTERN PetscErrorCode DMPlexGetDepthStratum(DM, PetscInt, PetscInt *, PetscInt *); 152 PETSC_EXTERN PetscErrorCode DMPlexGetHeightStratum(DM, PetscInt, PetscInt *, PetscInt *); 153 154 /* Topological Operations */ 155 PETSC_EXTERN PetscErrorCode DMPlexGetMeet(DM, PetscInt, const PetscInt [], PetscInt *, const PetscInt **); 156 PETSC_EXTERN PetscErrorCode DMPlexGetFullMeet(DM, PetscInt, const PetscInt [], PetscInt *, const PetscInt **); 157 PETSC_EXTERN PetscErrorCode DMPlexRestoreMeet(DM, PetscInt, const PetscInt [], PetscInt *, const PetscInt **); 158 PETSC_EXTERN PetscErrorCode DMPlexGetJoin(DM, PetscInt, const PetscInt [], PetscInt *, const PetscInt **); 159 PETSC_EXTERN PetscErrorCode DMPlexGetFullJoin(DM, PetscInt, const PetscInt [], PetscInt *, const PetscInt **); 160 PETSC_EXTERN PetscErrorCode DMPlexRestoreJoin(DM, PetscInt, const PetscInt [], PetscInt *, const PetscInt **); 161 PETSC_EXTERN PetscErrorCode DMPlexGetTransitiveClosure(DM, PetscInt, PetscBool, PetscInt *, PetscInt *[]); 162 PETSC_EXTERN PetscErrorCode DMPlexRestoreTransitiveClosure(DM, PetscInt, PetscBool, PetscInt *, PetscInt *[]); 163 164 /* Mesh Generation */ 165 PETSC_EXTERN PetscErrorCode DMPlexGenerate(DM, const char [], PetscBool , DM *); 166 PETSC_EXTERN PetscErrorCode DMPlexCopyCoordinates(DM, DM); 167 PETSC_EXTERN PetscErrorCode DMPlexCopyLabels(DM, DM); 168 PETSC_EXTERN PetscErrorCode DMPlexCreateDoublet(MPI_Comm, PetscInt, PetscBool, PetscBool, PetscBool, PetscReal, DM *); 169 PETSC_EXTERN PetscErrorCode DMPlexCreateSquareBoundary(DM, const PetscReal [], const PetscReal [], const PetscInt []); 170 PETSC_EXTERN PetscErrorCode DMPlexCreateCubeBoundary(DM, const PetscReal [], const PetscReal [], const PetscInt []); 171 PETSC_EXTERN PetscErrorCode DMPlexCreateSquareMesh(DM, const PetscReal [], const PetscReal [], const PetscInt [], DMBoundaryType, DMBoundaryType); 172 PETSC_EXTERN PetscErrorCode DMPlexCreateBoxMesh(MPI_Comm, PetscInt, PetscBool, DM *); 173 PETSC_EXTERN PetscErrorCode DMPlexCreateHexBoxMesh(MPI_Comm, PetscInt, const PetscInt[], DMBoundaryType, DMBoundaryType, DMBoundaryType, DM *); 174 PETSC_EXTERN PetscErrorCode DMPlexCreateConeSection(DM, PetscSection *); 175 PETSC_EXTERN PetscErrorCode DMPlexInvertCell(PetscInt, PetscInt, int []); 176 PETSC_EXTERN PetscErrorCode DMPlexLocalizeCoordinates(DM); 177 PETSC_EXTERN PetscErrorCode DMPlexCheckSymmetry(DM); 178 PETSC_EXTERN PetscErrorCode DMPlexCheckSkeleton(DM, PetscBool, PetscInt); 179 PETSC_EXTERN PetscErrorCode DMPlexCheckFaces(DM, PetscBool, PetscInt); 180 181 PETSC_EXTERN PetscErrorCode DMPlexTriangleSetOptions(DM, const char *); 182 PETSC_EXTERN PetscErrorCode DMPlexTetgenSetOptions(DM, const char *); 183 184 /* Mesh Partitioning and Distribution */ 185 PETSC_EXTERN PetscErrorCode DMPlexCreateNeighborCSR(DM, PetscInt, PetscInt *, PetscInt **, PetscInt **); 186 PETSC_EXTERN PetscErrorCode DMPlexGetPartitioner(DM, PetscPartitioner *); 187 PETSC_EXTERN PetscErrorCode DMPlexSetPartitioner(DM, PetscPartitioner); 188 PETSC_EXTERN PetscErrorCode DMPlexCreatePartition(DM, const char[], PetscInt, PetscBool, PetscSection *, IS *, PetscSection *, IS *); 189 PETSC_EXTERN PetscErrorCode DMPlexCreatePartitionerGraph(DM, PetscInt, PetscInt *, PetscInt **, PetscInt **); 190 PETSC_EXTERN PetscErrorCode DMPlexCreatePartitionClosure(DM, PetscSection, IS, PetscSection *, IS *); 191 PETSC_EXTERN PetscErrorCode DMPlexPartitionLabelInvert(DM, DMLabel, PetscSF, DMLabel); 192 PETSC_EXTERN PetscErrorCode DMPlexPartitionLabelClosure(DM, DMLabel); 193 PETSC_EXTERN PetscErrorCode DMPlexPartitionLabelAdjacency(DM, DMLabel); 194 PETSC_EXTERN PetscErrorCode DMPlexPartitionLabelCreateSF(DM, DMLabel, PetscSF *); 195 PETSC_EXTERN PetscErrorCode DMPlexDistribute(DM, PetscInt, PetscSF*, DM*); 196 PETSC_EXTERN PetscErrorCode DMPlexDistributeOverlap(DM, PetscInt, PetscSF *, DM *); 197 PETSC_EXTERN PetscErrorCode DMPlexDistributeField(DM,PetscSF,PetscSection,Vec,PetscSection,Vec); 198 PETSC_EXTERN PetscErrorCode DMPlexDistributeFieldIS(DM, PetscSF, PetscSection, IS, PetscSection, IS *); 199 PETSC_EXTERN PetscErrorCode DMPlexDistributeData(DM,PetscSF,PetscSection,MPI_Datatype,void*,PetscSection,void**); 200 PETSC_EXTERN PetscErrorCode DMPlexMigrate(DM, PetscSF, DM); 201 PETSC_EXTERN PetscErrorCode DMPlexSetAdjacencyUseCone(DM,PetscBool); 202 PETSC_EXTERN PetscErrorCode DMPlexGetAdjacencyUseCone(DM,PetscBool*); 203 PETSC_EXTERN PetscErrorCode DMPlexSetAdjacencyUseClosure(DM,PetscBool); 204 PETSC_EXTERN PetscErrorCode DMPlexGetAdjacencyUseClosure(DM,PetscBool*); 205 PETSC_EXTERN PetscErrorCode DMPlexSetAdjacencyUseAnchors(DM,PetscBool); 206 PETSC_EXTERN PetscErrorCode DMPlexGetAdjacencyUseAnchors(DM,PetscBool*); 207 PETSC_EXTERN PetscErrorCode DMPlexGetAdjacency(DM, PetscInt, PetscInt *, PetscInt *[]); 208 209 PETSC_EXTERN PetscErrorCode DMPlexGetOrdering(DM, MatOrderingType, IS *); 210 PETSC_EXTERN PetscErrorCode DMPlexPermute(DM, IS, DM *); 211 212 PETSC_EXTERN PetscErrorCode DMPlexCreateProcessSF(DM, PetscSF, IS *, PetscSF *); 213 PETSC_EXTERN PetscErrorCode DMPlexCreateTwoSidedProcessSF(DM, PetscSF, PetscSection, IS, PetscSection, IS, IS *, PetscSF *); 214 PETSC_EXTERN PetscErrorCode DMPlexDistributeOwnership(DM, PetscSection, IS *, PetscSection, IS *); 215 PETSC_EXTERN PetscErrorCode DMPlexCreateOverlap(DM, PetscInt, PetscSection, IS, PetscSection, IS, DMLabel *); 216 PETSC_EXTERN PetscErrorCode DMPlexCreateOverlapMigrationSF(DM, PetscSF, PetscSF *); 217 PETSC_EXTERN PetscErrorCode DMPlexStratifyMigrationSF(DM, PetscSF, PetscSF *); 218 219 /* Submesh Support */ 220 PETSC_EXTERN PetscErrorCode DMPlexCreateSubmesh(DM, DMLabel, PetscInt, DM*); 221 PETSC_EXTERN PetscErrorCode DMPlexCreateHybridMesh(DM, DMLabel, DMLabel *, DM *); 222 PETSC_EXTERN PetscErrorCode DMPlexGetSubpointMap(DM, DMLabel*); 223 PETSC_EXTERN PetscErrorCode DMPlexSetSubpointMap(DM, DMLabel); 224 PETSC_EXTERN PetscErrorCode DMPlexCreateSubpointIS(DM, IS *); 225 226 PETSC_EXTERN PetscErrorCode DMPlexMarkBoundaryFaces(DM, DMLabel); 227 PETSC_EXTERN PetscErrorCode DMPlexLabelComplete(DM, DMLabel); 228 PETSC_EXTERN PetscErrorCode DMPlexLabelCohesiveComplete(DM, DMLabel, DMLabel, PetscBool, DM); 229 PETSC_EXTERN PetscErrorCode DMPlexLabelAddCells(DM, DMLabel); 230 231 PETSC_EXTERN PetscErrorCode DMPlexGetRefinementLimit(DM, PetscReal *); 232 PETSC_EXTERN PetscErrorCode DMPlexSetRefinementLimit(DM, PetscReal); 233 PETSC_EXTERN PetscErrorCode DMPlexGetRefinementUniform(DM, PetscBool *); 234 PETSC_EXTERN PetscErrorCode DMPlexSetRefinementUniform(DM, PetscBool); 235 PETSC_EXTERN PetscErrorCode DMPlexGetCoarseDM(DM, DM *); 236 PETSC_EXTERN PetscErrorCode DMPlexSetCoarseDM(DM, DM); 237 PETSC_EXTERN PetscErrorCode DMPlexCreateCoarsePointIS(DM, IS *); 238 239 /* Support for cell-vertex meshes */ 240 PETSC_EXTERN PetscErrorCode DMPlexGetNumFaceVertices(DM, PetscInt, PetscInt, PetscInt *); 241 PETSC_EXTERN PetscErrorCode DMPlexGetOrientedFace(DM, PetscInt, PetscInt, const PetscInt [], PetscInt, PetscInt [], PetscInt [], PetscInt [], PetscBool *); 242 243 /* Geometry Support */ 244 PETSC_EXTERN PetscErrorCode DMPlexGetMinRadius(DM, PetscReal *); 245 PETSC_EXTERN PetscErrorCode DMPlexSetMinRadius(DM, PetscReal); 246 247 /* FVM Support */ 248 PETSC_EXTERN PetscErrorCode DMPlexComputeCellGeometryFVM(DM, PetscInt, PetscReal *, PetscReal [], PetscReal []); 249 PETSC_EXTERN PetscErrorCode DMPlexComputeGeometryFVM(DM, Vec *, Vec *); 250 PETSC_EXTERN PetscErrorCode DMPlexComputeGradientFVM(DM, PetscFV, Vec, Vec, DM *); 251 252 /* FEM Support */ 253 PETSC_EXTERN PetscErrorCode DMPlexInsertBoundaryValues(DM, Vec, PetscReal, Vec, Vec, Vec); 254 255 PETSC_EXTERN PetscErrorCode DMPlexCreateSection(DM, PetscInt, PetscInt,const PetscInt [],const PetscInt [], PetscInt,const PetscInt [],const IS [], IS, PetscSection *); 256 257 PETSC_EXTERN PetscErrorCode DMPlexComputeCellGeometryAffineFEM(DM, PetscInt, PetscReal *, PetscReal *, PetscReal *, PetscReal *); 258 PETSC_EXTERN PetscErrorCode DMPlexComputeCellGeometryFEM(DM, PetscInt, PetscFE, PetscReal *, PetscReal *, PetscReal *, PetscReal *); 259 PETSC_EXTERN PetscErrorCode DMPlexComputeGeometryFEM(DM, Vec *); 260 PETSC_EXTERN PetscErrorCode DMPlexVecGetClosure(DM, PetscSection, Vec, PetscInt, PetscInt *, PetscScalar *[]); 261 PETSC_EXTERN PetscErrorCode DMPlexVecRestoreClosure(DM, PetscSection, Vec, PetscInt, PetscInt *, PetscScalar *[]); 262 PETSC_EXTERN PetscErrorCode DMPlexVecSetClosure(DM, PetscSection, Vec, PetscInt, const PetscScalar[], InsertMode); 263 PETSC_EXTERN PetscErrorCode DMPlexMatSetClosure(DM, PetscSection, PetscSection, Mat, PetscInt, const PetscScalar[], InsertMode); 264 PETSC_EXTERN PetscErrorCode DMPlexMatSetClosureRefined(DM, PetscSection, PetscSection, DM, PetscSection, PetscSection, Mat, PetscInt, const PetscScalar[], InsertMode); 265 PETSC_EXTERN PetscErrorCode DMPlexMatGetClosureIndicesRefined(DM, PetscSection, PetscSection, DM, PetscSection, PetscSection, PetscInt, PetscInt[], PetscInt[]); 266 PETSC_EXTERN PetscErrorCode DMPlexCreateClosureIndex(DM, PetscSection); 267 268 PETSC_EXTERN PetscErrorCode DMPlexCreateFromFile(MPI_Comm, const char[], PetscBool, DM *); 269 PETSC_EXTERN PetscErrorCode DMPlexCreateExodus(MPI_Comm, PetscInt, PetscBool, DM *); 270 PETSC_EXTERN PetscErrorCode DMPlexCreateExodusFromFile(MPI_Comm, const char [], PetscBool, DM *); 271 PETSC_EXTERN PetscErrorCode DMPlexCreateCGNS(MPI_Comm, PetscInt, PetscBool, DM *); 272 PETSC_EXTERN PetscErrorCode DMPlexCreateCGNSFromFile(MPI_Comm, const char[], PetscBool, DM *); 273 PETSC_EXTERN PetscErrorCode DMPlexCreateGmsh(MPI_Comm, PetscViewer, PetscBool, DM *); 274 PETSC_EXTERN PetscErrorCode DMPlexCreateGmshFromFile(MPI_Comm, const char [], PetscBool, DM *); 275 276 PETSC_EXTERN PetscErrorCode DMPlexConstructGhostCells(DM, const char [], PetscInt *, DM *); 277 PETSC_EXTERN PetscErrorCode DMPlexConstructCohesiveCells(DM, DMLabel, DM *); 278 279 PETSC_EXTERN PetscErrorCode DMPlexGetHybridBounds(DM, PetscInt *, PetscInt *, PetscInt *, PetscInt *); 280 PETSC_EXTERN PetscErrorCode DMPlexSetHybridBounds(DM, PetscInt, PetscInt, PetscInt, PetscInt); 281 PETSC_EXTERN PetscErrorCode DMPlexGetVTKCellHeight(DM, PetscInt *); 282 PETSC_EXTERN PetscErrorCode DMPlexSetVTKCellHeight(DM, PetscInt); 283 PETSC_EXTERN PetscErrorCode DMPlexVTKWriteAll(PetscObject, PetscViewer); 284 285 PETSC_EXTERN PetscErrorCode DMPlexGetScale(DM, PetscUnit, PetscReal *); 286 PETSC_EXTERN PetscErrorCode DMPlexSetScale(DM, PetscUnit, PetscReal); 287 288 typedef struct _n_Boundary *DMBoundary; 289 PETSC_EXTERN PetscErrorCode DMPlexAddBoundary(DM, PetscBool, const char[], const char[], PetscInt, void (*)(), PetscInt, const PetscInt *, void *); 290 PETSC_EXTERN PetscErrorCode DMPlexGetNumBoundary(DM, PetscInt *); 291 PETSC_EXTERN PetscErrorCode DMPlexGetBoundary(DM, PetscInt, PetscBool *, const char **, const char **, PetscInt *, void (**)(), PetscInt *, const PetscInt **, void **); 292 PETSC_EXTERN PetscErrorCode DMPlexIsBoundaryPoint(DM, PetscInt, PetscBool *); 293 PETSC_EXTERN PetscErrorCode DMPlexCopyBoundary(DM, DM); 294 295 typedef struct { 296 DM dm; 297 Vec u; /* The base vector for the Jacbobian action J(u) x */ 298 Mat J; /* Preconditioner for testing */ 299 void *user; 300 } JacActionCtx; 301 302 PETSC_EXTERN PetscErrorCode DMPlexInsertBoundaryValuesFEM(DM, Vec); 303 PETSC_EXTERN PetscErrorCode DMPlexSetMaxProjectionHeight(DM, PetscInt); 304 PETSC_EXTERN PetscErrorCode DMPlexGetMaxProjectionHeight(DM, PetscInt*); 305 PETSC_EXTERN PetscErrorCode DMPlexProjectFunction(DM, void (**)(const PetscReal [], PetscScalar *, void *), void **, InsertMode, Vec); 306 PETSC_EXTERN PetscErrorCode DMPlexProjectFunctionLocal(DM, void (**)(const PetscReal [], PetscScalar *, void *), void **, InsertMode, Vec); 307 PETSC_EXTERN PetscErrorCode DMPlexProjectFieldLocal(DM, Vec, void (**)(const PetscScalar[], const PetscScalar[], const PetscScalar[], const PetscScalar[], const PetscScalar[], const PetscScalar[], const PetscReal [], PetscScalar []), InsertMode, Vec); 308 PETSC_EXTERN PetscErrorCode DMPlexComputeL2Diff(DM, void (**)(const PetscReal [], PetscScalar *, void *), void **, Vec, PetscReal *); 309 PETSC_EXTERN PetscErrorCode DMPlexComputeL2GradientDiff(DM, void (**)(const PetscReal [], const PetscReal [], PetscScalar *, void *), void **, Vec, const PetscReal [], PetscReal *); 310 PETSC_EXTERN PetscErrorCode DMPlexComputeL2FieldDiff(DM, void (**)(const PetscReal [], PetscScalar *, void *), void **, Vec, PetscReal[]); 311 PETSC_EXTERN PetscErrorCode DMPlexComputeIntegralFEM(DM, Vec, PetscReal *, void *); 312 PETSC_EXTERN PetscErrorCode DMPlexComputeInterpolatorFEM(DM, DM, Mat, void *); 313 PETSC_EXTERN PetscErrorCode DMPlexComputeInjectorFEM(DM, DM, VecScatter *, void *); 314 315 PETSC_EXTERN PetscErrorCode DMPlexSNESComputeResidualFEM(DM, Vec, Vec, void *); 316 PETSC_EXTERN PetscErrorCode DMPlexSNESComputeJacobianFEM(DM, Vec, Mat, Mat,void *); 317 318 PETSC_EXTERN PetscErrorCode DMPlexTSComputeRHSFunctionFVM(DM, PetscReal, Vec, Vec, void *); 319 PETSC_EXTERN PetscErrorCode DMPlexTSComputeIFunctionFEM(DM, PetscReal, Vec, Vec, Vec, void *); 320 321 PETSC_EXTERN PetscErrorCode DMPlexComputeRHSFunctionFVM(DM, PetscReal, Vec, Vec, void *); 322 323 /* anchors */ 324 PETSC_EXTERN PetscErrorCode DMPlexGetAnchors(DM, PetscSection*, IS*); 325 PETSC_EXTERN PetscErrorCode DMPlexSetAnchors(DM, PetscSection, IS); 326 /* tree */ 327 PETSC_EXTERN PetscErrorCode DMPlexSetReferenceTree(DM, DM); 328 PETSC_EXTERN PetscErrorCode DMPlexGetReferenceTree(DM, DM*); 329 PETSC_EXTERN PetscErrorCode DMPlexReferenceTreeGetChildSymmetry(DM, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt *, PetscInt *); 330 PETSC_EXTERN PetscErrorCode DMPlexCreateDefaultReferenceTree(MPI_Comm, PetscInt, PetscBool, DM*); 331 PETSC_EXTERN PetscErrorCode DMPlexSetTree(DM, PetscSection, PetscInt [], PetscInt []); 332 PETSC_EXTERN PetscErrorCode DMPlexGetTree(DM, PetscSection *, PetscInt *[], PetscInt *[], PetscSection *, PetscInt *[]); 333 PETSC_EXTERN PetscErrorCode DMPlexGetTreeParent(DM, PetscInt, PetscInt *, PetscInt *); 334 PETSC_EXTERN PetscErrorCode DMPlexGetTreeChildren(DM, PetscInt, PetscInt *, const PetscInt *[]); 335 PETSC_EXTERN PetscErrorCode DMPlexTreeRefineCell(DM, PetscInt, DM *); 336 #endif 337