1 /* 2 DMPlex, for parallel unstructured distributed mesh problems. 3 */ 4 #if !defined(__PETSCDMPLEX_H) 5 #define __PETSCDMPLEX_H 6 7 #include <petscdm.h> 8 #include <petscdt.h> 9 #include <petscfe.h> 10 #include <petscfv.h> 11 #include <petscsftypes.h> 12 13 PETSC_EXTERN PetscClassId PETSCPARTITIONER_CLASSID; 14 15 /*J 16 PetscPartitionerType - String with the name of a PETSc graph partitioner 17 18 Level: beginner 19 20 .seealso: PetscPartitionerSetType(), PetscPartitioner 21 J*/ 22 typedef const char *PetscPartitionerType; 23 #define PETSCPARTITIONERCHACO "chaco" 24 #define PETSCPARTITIONERPARMETIS "parmetis" 25 #define PETSCPARTITIONERSHELL "shell" 26 27 PETSC_EXTERN PetscFunctionList PetscPartitionerList; 28 PETSC_EXTERN PetscBool PetscPartitionerRegisterAllCalled; 29 PETSC_EXTERN PetscErrorCode PetscPartitionerCreate(MPI_Comm, PetscPartitioner *); 30 PETSC_EXTERN PetscErrorCode PetscPartitionerDestroy(PetscPartitioner *); 31 PETSC_EXTERN PetscErrorCode PetscPartitionerSetType(PetscPartitioner, PetscPartitionerType); 32 PETSC_EXTERN PetscErrorCode PetscPartitionerGetType(PetscPartitioner, PetscPartitionerType *); 33 PETSC_EXTERN PetscErrorCode PetscPartitionerSetUp(PetscPartitioner); 34 PETSC_EXTERN PetscErrorCode PetscPartitionerSetFromOptions(PetscPartitioner); 35 PETSC_EXTERN PetscErrorCode PetscPartitionerViewFromOptions(PetscPartitioner, const char[], const char[]); 36 PETSC_EXTERN PetscErrorCode PetscPartitionerView(PetscPartitioner, PetscViewer); 37 PETSC_EXTERN PetscErrorCode PetscPartitionerRegister(const char [], PetscErrorCode (*)(PetscPartitioner)); 38 PETSC_EXTERN PetscErrorCode PetscPartitionerRegisterAll(void); 39 PETSC_EXTERN PetscErrorCode PetscPartitionerRegisterDestroy(void); 40 41 PETSC_EXTERN PetscErrorCode PetscPartitionerPartition(PetscPartitioner, DM, PetscBool, PetscSection, IS *, PetscSection, IS *); 42 43 PETSC_EXTERN PetscErrorCode PetscPartitionerShellSetPartition(PetscPartitioner, PetscInt, const PetscInt[], const PetscInt[]); 44 45 PETSC_EXTERN PetscErrorCode DMPlexCreate(MPI_Comm, DM*); 46 PETSC_EXTERN PetscErrorCode DMPlexCreateCohesiveSubmesh(DM, PetscBool, const char [], PetscInt, DM *); 47 PETSC_EXTERN PetscErrorCode DMPlexCreateFromCellList(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscBool, const int[], PetscInt, const double[], DM*); 48 PETSC_EXTERN PetscErrorCode DMPlexCreateFromDAG(DM, PetscInt, const PetscInt [], const PetscInt [], const PetscInt [], const PetscInt [], const PetscScalar []); 49 PETSC_EXTERN PetscErrorCode DMPlexCreateReferenceCell(MPI_Comm, PetscInt, PetscBool, DM*); 50 PETSC_EXTERN PetscErrorCode DMPlexGetChart(DM, PetscInt *, PetscInt *); 51 PETSC_EXTERN PetscErrorCode DMPlexSetChart(DM, PetscInt, PetscInt); 52 PETSC_EXTERN PetscErrorCode DMPlexGetConeSize(DM, PetscInt, PetscInt *); 53 PETSC_EXTERN PetscErrorCode DMPlexSetConeSize(DM, PetscInt, PetscInt); 54 PETSC_EXTERN PetscErrorCode DMPlexAddConeSize(DM, PetscInt, PetscInt); 55 PETSC_EXTERN PetscErrorCode DMPlexGetCone(DM, PetscInt, const PetscInt *[]); 56 PETSC_EXTERN PetscErrorCode DMPlexSetCone(DM, PetscInt, const PetscInt[]); 57 PETSC_EXTERN PetscErrorCode DMPlexInsertCone(DM, PetscInt, PetscInt, PetscInt); 58 PETSC_EXTERN PetscErrorCode DMPlexInsertConeOrientation(DM, PetscInt, PetscInt, PetscInt); 59 PETSC_EXTERN PetscErrorCode DMPlexGetConeOrientation(DM, PetscInt, const PetscInt *[]); 60 PETSC_EXTERN PetscErrorCode DMPlexSetConeOrientation(DM, PetscInt, const PetscInt[]); 61 PETSC_EXTERN PetscErrorCode DMPlexGetSupportSize(DM, PetscInt, PetscInt *); 62 PETSC_EXTERN PetscErrorCode DMPlexSetSupportSize(DM, PetscInt, PetscInt); 63 PETSC_EXTERN PetscErrorCode DMPlexGetSupport(DM, PetscInt, const PetscInt *[]); 64 PETSC_EXTERN PetscErrorCode DMPlexSetSupport(DM, PetscInt, const PetscInt[]); 65 PETSC_EXTERN PetscErrorCode DMPlexInsertSupport(DM, PetscInt, PetscInt, PetscInt); 66 PETSC_EXTERN PetscErrorCode DMPlexGetConeSection(DM, PetscSection *); 67 PETSC_EXTERN PetscErrorCode DMPlexGetSupportSection(DM, PetscSection *); 68 PETSC_EXTERN PetscErrorCode DMPlexGetCones(DM, PetscInt *[]); 69 PETSC_EXTERN PetscErrorCode DMPlexGetConeOrientations(DM, PetscInt *[]); 70 PETSC_EXTERN PetscErrorCode DMPlexGetMaxSizes(DM, PetscInt *, PetscInt *); 71 PETSC_EXTERN PetscErrorCode DMPlexSymmetrize(DM); 72 PETSC_EXTERN PetscErrorCode DMPlexStratify(DM); 73 PETSC_EXTERN PetscErrorCode DMPlexEqual(DM,DM,PetscBool*); 74 PETSC_EXTERN PetscErrorCode DMPlexOrient(DM); 75 PETSC_EXTERN PetscErrorCode DMPlexInterpolate(DM, DM *); 76 PETSC_EXTERN PetscErrorCode DMPlexUninterpolate(DM, DM *); 77 PETSC_EXTERN PetscErrorCode DMPlexLoad(PetscViewer, DM); 78 PETSC_EXTERN PetscErrorCode DMPlexPreallocateOperator(DM, PetscInt, PetscSection, PetscSection, PetscInt[], PetscInt[], PetscInt[], PetscInt[], Mat, PetscBool); 79 PETSC_EXTERN PetscErrorCode DMPlexGetPointLocal(DM,PetscInt,PetscInt*,PetscInt*); 80 PETSC_EXTERN PetscErrorCode DMPlexPointLocalRef(DM,PetscInt,PetscScalar*,void*); 81 PETSC_EXTERN PetscErrorCode DMPlexPointLocalRead(DM,PetscInt,const PetscScalar*,const void*); 82 PETSC_EXTERN PetscErrorCode DMPlexGetPointGlobal(DM,PetscInt,PetscInt*,PetscInt*); 83 PETSC_EXTERN PetscErrorCode DMPlexPointGlobalRef(DM,PetscInt,PetscScalar*,void*); 84 PETSC_EXTERN PetscErrorCode DMPlexPointGlobalRead(DM,PetscInt,const PetscScalar*,const void*); 85 86 /*S 87 DMLabel - Object which encapsulates a subset of the mesh from this DM 88 89 Level: developer 90 91 Concepts: grids, grid refinement 92 93 .seealso: DM, DMPlexCreate(), DMPlexCreateLabel() 94 S*/ 95 typedef struct _n_DMLabel *DMLabel; 96 PETSC_EXTERN PetscErrorCode DMLabelCreate(const char [], DMLabel *); 97 PETSC_EXTERN PetscErrorCode DMLabelView(DMLabel, PetscViewer); 98 PETSC_EXTERN PetscErrorCode DMLabelDestroy(DMLabel *); 99 PETSC_EXTERN PetscErrorCode DMLabelDuplicate(DMLabel, DMLabel *); 100 PETSC_EXTERN PetscErrorCode DMLabelGetName(DMLabel, const char **); 101 PETSC_EXTERN PetscErrorCode DMLabelGetValue(DMLabel, PetscInt, PetscInt *); 102 PETSC_EXTERN PetscErrorCode DMLabelSetValue(DMLabel, PetscInt, PetscInt); 103 PETSC_EXTERN PetscErrorCode DMLabelClearValue(DMLabel, PetscInt, PetscInt); 104 PETSC_EXTERN PetscErrorCode DMLabelGetNumValues(DMLabel, PetscInt *); 105 PETSC_EXTERN PetscErrorCode DMLabelGetStratumBounds(DMLabel, PetscInt, PetscInt *, PetscInt *); 106 PETSC_EXTERN PetscErrorCode DMLabelGetValueIS(DMLabel, IS *); 107 PETSC_EXTERN PetscErrorCode DMLabelStratumHasPoint(DMLabel, PetscInt, PetscInt, PetscBool *); 108 PETSC_EXTERN PetscErrorCode DMLabelGetStratumSize(DMLabel, PetscInt, PetscInt *); 109 PETSC_EXTERN PetscErrorCode DMLabelGetStratumIS(DMLabel, PetscInt, IS *); 110 PETSC_EXTERN PetscErrorCode DMLabelClearStratum(DMLabel, PetscInt); 111 PETSC_EXTERN PetscErrorCode DMLabelCreateIndex(DMLabel, PetscInt, PetscInt); 112 PETSC_EXTERN PetscErrorCode DMLabelDestroyIndex(DMLabel); 113 PETSC_EXTERN PetscErrorCode DMLabelHasValue(DMLabel, PetscInt, PetscBool *); 114 PETSC_EXTERN PetscErrorCode DMLabelHasPoint(DMLabel, PetscInt, PetscBool *); 115 PETSC_EXTERN PetscErrorCode DMLabelFilter(DMLabel, PetscInt, PetscInt); 116 PETSC_EXTERN PetscErrorCode DMLabelPermute(DMLabel, IS, DMLabel *); 117 PETSC_EXTERN PetscErrorCode DMLabelDistribute(DMLabel, PetscSF, DMLabel *); 118 119 PETSC_EXTERN PetscErrorCode DMPlexCreateLabel(DM, const char []); 120 PETSC_EXTERN PetscErrorCode DMPlexGetLabelValue(DM, const char[], PetscInt, PetscInt *); 121 PETSC_EXTERN PetscErrorCode DMPlexSetLabelValue(DM, const char[], PetscInt, PetscInt); 122 PETSC_EXTERN PetscErrorCode DMPlexClearLabelValue(DM, const char[], PetscInt, PetscInt); 123 PETSC_EXTERN PetscErrorCode DMPlexGetLabelSize(DM, const char[], PetscInt *); 124 PETSC_EXTERN PetscErrorCode DMPlexGetLabelIdIS(DM, const char[], IS *); 125 PETSC_EXTERN PetscErrorCode DMPlexGetStratumSize(DM, const char [], PetscInt, PetscInt *); 126 PETSC_EXTERN PetscErrorCode DMPlexGetStratumIS(DM, const char [], PetscInt, IS *); 127 PETSC_EXTERN PetscErrorCode DMPlexClearLabelStratum(DM, const char[], PetscInt); 128 PETSC_EXTERN PetscErrorCode DMPlexGetLabelOutput(DM, const char[], PetscBool *); 129 PETSC_EXTERN PetscErrorCode DMPlexSetLabelOutput(DM, const char[], PetscBool); 130 PETSC_EXTERN PetscErrorCode PetscSectionCreateGlobalSectionLabel(PetscSection, PetscSF, PetscBool, DMLabel, PetscInt, PetscSection *); 131 132 PETSC_EXTERN PetscErrorCode DMPlexGetNumLabels(DM, PetscInt *); 133 PETSC_EXTERN PetscErrorCode DMPlexGetLabelName(DM, PetscInt, const char **); 134 PETSC_EXTERN PetscErrorCode DMPlexHasLabel(DM, const char [], PetscBool *); 135 PETSC_EXTERN PetscErrorCode DMPlexGetLabel(DM, const char *, DMLabel *); 136 PETSC_EXTERN PetscErrorCode DMPlexGetLabelByNum(DM, PetscInt, DMLabel *); 137 PETSC_EXTERN PetscErrorCode DMPlexAddLabel(DM, DMLabel); 138 PETSC_EXTERN PetscErrorCode DMPlexRemoveLabel(DM, const char [], DMLabel *); 139 PETSC_EXTERN PetscErrorCode DMPlexGetCellNumbering(DM, IS *); 140 PETSC_EXTERN PetscErrorCode DMPlexGetVertexNumbering(DM, IS *); 141 PETSC_EXTERN PetscErrorCode DMPlexCreatePointNumbering(DM, IS *); 142 143 PETSC_EXTERN PetscErrorCode DMPlexGetDepth(DM, PetscInt *); 144 PETSC_EXTERN PetscErrorCode DMPlexGetDepthLabel(DM, DMLabel *); 145 PETSC_EXTERN PetscErrorCode DMPlexGetDepthStratum(DM, PetscInt, PetscInt *, PetscInt *); 146 PETSC_EXTERN PetscErrorCode DMPlexGetHeightStratum(DM, PetscInt, PetscInt *, PetscInt *); 147 148 /* Topological Operations */ 149 PETSC_EXTERN PetscErrorCode DMPlexGetMeet(DM, PetscInt, const PetscInt [], PetscInt *, const PetscInt **); 150 PETSC_EXTERN PetscErrorCode DMPlexGetFullMeet(DM, PetscInt, const PetscInt [], PetscInt *, const PetscInt **); 151 PETSC_EXTERN PetscErrorCode DMPlexRestoreMeet(DM, PetscInt, const PetscInt [], PetscInt *, const PetscInt **); 152 PETSC_EXTERN PetscErrorCode DMPlexGetJoin(DM, PetscInt, const PetscInt [], PetscInt *, const PetscInt **); 153 PETSC_EXTERN PetscErrorCode DMPlexGetFullJoin(DM, PetscInt, const PetscInt [], PetscInt *, const PetscInt **); 154 PETSC_EXTERN PetscErrorCode DMPlexRestoreJoin(DM, PetscInt, const PetscInt [], PetscInt *, const PetscInt **); 155 PETSC_EXTERN PetscErrorCode DMPlexGetTransitiveClosure(DM, PetscInt, PetscBool, PetscInt *, PetscInt *[]); 156 PETSC_EXTERN PetscErrorCode DMPlexRestoreTransitiveClosure(DM, PetscInt, PetscBool, PetscInt *, PetscInt *[]); 157 158 /* Mesh Generation */ 159 PETSC_EXTERN PetscErrorCode DMPlexGenerate(DM, const char [], PetscBool , DM *); 160 PETSC_EXTERN PetscErrorCode DMPlexCopyCoordinates(DM, DM); 161 PETSC_EXTERN PetscErrorCode DMPlexCopyLabels(DM, DM); 162 PETSC_EXTERN PetscErrorCode DMPlexCreateDoublet(MPI_Comm, PetscInt, PetscBool, PetscBool, PetscBool, PetscReal, DM *); 163 PETSC_EXTERN PetscErrorCode DMPlexCreateSquareBoundary(DM, const PetscReal [], const PetscReal [], const PetscInt []); 164 PETSC_EXTERN PetscErrorCode DMPlexCreateCubeBoundary(DM, const PetscReal [], const PetscReal [], const PetscInt []); 165 PETSC_EXTERN PetscErrorCode DMPlexCreateSquareMesh(DM, const PetscReal [], const PetscReal [], const PetscInt [], DMBoundaryType, DMBoundaryType); 166 PETSC_EXTERN PetscErrorCode DMPlexCreateBoxMesh(MPI_Comm, PetscInt, PetscBool, DM *); 167 PETSC_EXTERN PetscErrorCode DMPlexCreateHexBoxMesh(MPI_Comm, PetscInt, const PetscInt[], DMBoundaryType, DMBoundaryType, DMBoundaryType, DM *); 168 PETSC_EXTERN PetscErrorCode DMPlexCreateConeSection(DM, PetscSection *); 169 PETSC_EXTERN PetscErrorCode DMPlexInvertCell(PetscInt, PetscInt, int []); 170 PETSC_EXTERN PetscErrorCode DMPlexLocalizeCoordinates(DM); 171 PETSC_EXTERN PetscErrorCode DMPlexCheckSymmetry(DM); 172 PETSC_EXTERN PetscErrorCode DMPlexCheckSkeleton(DM, PetscBool, PetscInt); 173 PETSC_EXTERN PetscErrorCode DMPlexCheckFaces(DM, PetscBool, PetscInt); 174 175 PETSC_EXTERN PetscErrorCode DMPlexTriangleSetOptions(DM, const char *); 176 PETSC_EXTERN PetscErrorCode DMPlexTetgenSetOptions(DM, const char *); 177 178 /* Mesh Partitioning and Distribution */ 179 PETSC_EXTERN PetscErrorCode DMPlexCreateNeighborCSR(DM, PetscInt, PetscInt *, PetscInt **, PetscInt **); 180 PETSC_EXTERN PetscErrorCode DMPlexGetPartitioner(DM, PetscPartitioner *); 181 PETSC_EXTERN PetscErrorCode DMPlexSetPartitioner(DM, PetscPartitioner); 182 PETSC_EXTERN PetscErrorCode DMPlexCreatePartition(DM, const char[], PetscInt, PetscBool, PetscSection *, IS *, PetscSection *, IS *); 183 PETSC_EXTERN PetscErrorCode DMPlexCreatePartitionClosure(DM, PetscSection, IS, PetscSection *, IS *); 184 PETSC_EXTERN PetscErrorCode DMPlexDistribute(DM, PetscInt, PetscSF*, DM*); 185 PETSC_EXTERN PetscErrorCode DMPlexDistributeOverlap(DM, PetscInt, ISLocalToGlobalMapping, PetscSF *, DM *); 186 PETSC_EXTERN PetscErrorCode DMPlexDistributeField(DM,PetscSF,PetscSection,Vec,PetscSection,Vec); 187 PETSC_EXTERN PetscErrorCode DMPlexDistributeFieldIS(DM, PetscSF, PetscSection, IS, PetscSection, IS *); 188 PETSC_EXTERN PetscErrorCode DMPlexDistributeData(DM,PetscSF,PetscSection,MPI_Datatype,void*,PetscSection,void**); 189 PETSC_EXTERN PetscErrorCode DMPlexSetAdjacencyUseCone(DM,PetscBool); 190 PETSC_EXTERN PetscErrorCode DMPlexGetAdjacencyUseCone(DM,PetscBool*); 191 PETSC_EXTERN PetscErrorCode DMPlexSetAdjacencyUseClosure(DM,PetscBool); 192 PETSC_EXTERN PetscErrorCode DMPlexGetAdjacencyUseClosure(DM,PetscBool*); 193 PETSC_EXTERN PetscErrorCode DMPlexSetAdjacencyUseAnchors(DM,PetscBool); 194 PETSC_EXTERN PetscErrorCode DMPlexGetAdjacencyUseAnchors(DM,PetscBool*); 195 PETSC_EXTERN PetscErrorCode DMPlexGetAdjacency(DM, PetscInt, PetscInt *, PetscInt *[]); 196 197 PETSC_EXTERN PetscErrorCode DMPlexGetOrdering(DM, MatOrderingType, IS *); 198 PETSC_EXTERN PetscErrorCode DMPlexPermute(DM, IS, DM *); 199 200 PETSC_EXTERN PetscErrorCode DMPlexCreateProcessSF(DM, PetscSF, IS *, PetscSF *); 201 PETSC_EXTERN PetscErrorCode DMPlexCreateTwoSidedProcessSF(DM, PetscSF, PetscSection, IS, PetscSection, IS, IS *, PetscSF *); 202 PETSC_EXTERN PetscErrorCode DMPlexDistributeOwnership(DM, PetscSection, IS *, PetscSection, IS *); 203 PETSC_EXTERN PetscErrorCode DMPlexCreateOverlap(DM, PetscSection, IS, PetscSection, IS, PetscSF *); 204 PETSC_EXTERN PetscErrorCode DMPlexCreateOverlapMigrationSF(DM, PetscSF, PetscSF *); 205 206 /* Submesh Support */ 207 PETSC_EXTERN PetscErrorCode DMPlexCreateSubmesh(DM, DMLabel, PetscInt, DM*); 208 PETSC_EXTERN PetscErrorCode DMPlexCreateHybridMesh(DM, DMLabel, DMLabel *, DM *); 209 PETSC_EXTERN PetscErrorCode DMPlexGetSubpointMap(DM, DMLabel*); 210 PETSC_EXTERN PetscErrorCode DMPlexSetSubpointMap(DM, DMLabel); 211 PETSC_EXTERN PetscErrorCode DMPlexCreateSubpointIS(DM, IS *); 212 213 PETSC_EXTERN PetscErrorCode DMPlexMarkBoundaryFaces(DM, DMLabel); 214 PETSC_EXTERN PetscErrorCode DMPlexLabelComplete(DM, DMLabel); 215 PETSC_EXTERN PetscErrorCode DMPlexLabelCohesiveComplete(DM, DMLabel, DMLabel, PetscBool, DM); 216 PETSC_EXTERN PetscErrorCode DMPlexLabelAddCells(DM, DMLabel); 217 218 /* Mesh Refinement */ 219 typedef PetscInt CellRefiner; 220 221 PETSC_EXTERN PetscErrorCode DMPlexGetRefinementLimit(DM, PetscReal *); 222 PETSC_EXTERN PetscErrorCode DMPlexSetRefinementLimit(DM, PetscReal); 223 PETSC_EXTERN PetscErrorCode DMPlexGetRefinementUniform(DM, PetscBool *); 224 PETSC_EXTERN PetscErrorCode DMPlexSetRefinementUniform(DM, PetscBool); 225 PETSC_EXTERN PetscErrorCode DMPlexGetCoarseDM(DM, DM *); 226 PETSC_EXTERN PetscErrorCode DMPlexSetCoarseDM(DM, DM); 227 PETSC_EXTERN PetscErrorCode DMPlexCreateCoarsePointIS(DM, IS *); 228 229 /* Support for cell-vertex meshes */ 230 PETSC_EXTERN PetscErrorCode DMPlexGetNumFaceVertices(DM, PetscInt, PetscInt, PetscInt *); 231 PETSC_EXTERN PetscErrorCode DMPlexGetOrientedFace(DM, PetscInt, PetscInt, const PetscInt [], PetscInt, PetscInt [], PetscInt [], PetscInt [], PetscBool *); 232 233 /* Geometry Support */ 234 PETSC_EXTERN PetscErrorCode DMPlexGetMinRadius(DM, PetscReal *); 235 PETSC_EXTERN PetscErrorCode DMPlexSetMinRadius(DM, PetscReal); 236 237 /* FVM Support */ 238 PETSC_EXTERN PetscErrorCode DMPlexComputeCellGeometryFVM(DM, PetscInt, PetscReal *, PetscReal [], PetscReal []); 239 PETSC_EXTERN PetscErrorCode DMPlexComputeGeometryFVM(DM, Vec *, Vec *); 240 PETSC_EXTERN PetscErrorCode DMPlexComputeGradientFVM(DM, PetscFV, Vec, Vec, DM *); 241 242 /* FEM Support */ 243 PETSC_EXTERN PetscErrorCode DMPlexInsertBoundaryValues(DM, Vec, PetscReal, Vec, Vec, Vec); 244 245 PETSC_EXTERN PetscErrorCode DMPlexCreateSection(DM, PetscInt, PetscInt,const PetscInt [],const PetscInt [], PetscInt,const PetscInt [],const IS [], IS, PetscSection *); 246 247 PETSC_EXTERN PetscErrorCode DMPlexComputeCellGeometryAffineFEM(DM, PetscInt, PetscReal *, PetscReal *, PetscReal *, PetscReal *); 248 PETSC_EXTERN PetscErrorCode DMPlexComputeCellGeometryFEM(DM, PetscInt, PetscFE, PetscReal *, PetscReal *, PetscReal *, PetscReal *); 249 PETSC_EXTERN PetscErrorCode DMPlexComputeGeometryFEM(DM, Vec *); 250 PETSC_EXTERN PetscErrorCode DMPlexVecGetClosure(DM, PetscSection, Vec, PetscInt, PetscInt *, PetscScalar *[]); 251 PETSC_EXTERN PetscErrorCode DMPlexVecRestoreClosure(DM, PetscSection, Vec, PetscInt, PetscInt *, PetscScalar *[]); 252 PETSC_EXTERN PetscErrorCode DMPlexVecSetClosure(DM, PetscSection, Vec, PetscInt, const PetscScalar[], InsertMode); 253 PETSC_EXTERN PetscErrorCode DMPlexMatSetClosure(DM, PetscSection, PetscSection, Mat, PetscInt, const PetscScalar[], InsertMode); 254 PETSC_EXTERN PetscErrorCode DMPlexMatSetClosureRefined(DM, PetscSection, PetscSection, DM, PetscSection, PetscSection, Mat, PetscInt, const PetscScalar[], InsertMode); 255 PETSC_EXTERN PetscErrorCode DMPlexMatGetClosureIndicesRefined(DM, PetscSection, PetscSection, DM, PetscSection, PetscSection, PetscInt, PetscInt[], PetscInt[]); 256 PETSC_EXTERN PetscErrorCode DMPlexCreateClosureIndex(DM, PetscSection); 257 258 PETSC_EXTERN PetscErrorCode DMPlexCreateFromFile(MPI_Comm, const char[], PetscBool, DM *); 259 PETSC_EXTERN PetscErrorCode DMPlexCreateExodus(MPI_Comm, PetscInt, PetscBool, DM *); 260 PETSC_EXTERN PetscErrorCode DMPlexCreateExodusFromFile(MPI_Comm, const char [], PetscBool, DM *); 261 PETSC_EXTERN PetscErrorCode DMPlexCreateCGNS(MPI_Comm, PetscInt, PetscBool, DM *); 262 PETSC_EXTERN PetscErrorCode DMPlexCreateCGNSFromFile(MPI_Comm, const char[], PetscBool, DM *); 263 PETSC_EXTERN PetscErrorCode DMPlexCreateGmsh(MPI_Comm, PetscViewer, PetscBool, DM *); 264 265 PETSC_EXTERN PetscErrorCode DMPlexConstructGhostCells(DM, const char [], PetscInt *, DM *); 266 PETSC_EXTERN PetscErrorCode DMPlexConstructCohesiveCells(DM, DMLabel, DM *); 267 268 PETSC_EXTERN PetscErrorCode DMPlexGetHybridBounds(DM, PetscInt *, PetscInt *, PetscInt *, PetscInt *); 269 PETSC_EXTERN PetscErrorCode DMPlexSetHybridBounds(DM, PetscInt, PetscInt, PetscInt, PetscInt); 270 PETSC_EXTERN PetscErrorCode DMPlexGetVTKCellHeight(DM, PetscInt *); 271 PETSC_EXTERN PetscErrorCode DMPlexSetVTKCellHeight(DM, PetscInt); 272 PETSC_EXTERN PetscErrorCode DMPlexVTKWriteAll(PetscObject, PetscViewer); 273 274 PETSC_EXTERN PetscErrorCode DMPlexGetScale(DM, PetscUnit, PetscReal *); 275 PETSC_EXTERN PetscErrorCode DMPlexSetScale(DM, PetscUnit, PetscReal); 276 277 typedef struct _n_Boundary *DMBoundary; 278 PETSC_EXTERN PetscErrorCode DMPlexAddBoundary(DM, PetscBool, const char[], const char[], PetscInt, void (*)(), PetscInt, const PetscInt *, void *); 279 PETSC_EXTERN PetscErrorCode DMPlexGetNumBoundary(DM, PetscInt *); 280 PETSC_EXTERN PetscErrorCode DMPlexGetBoundary(DM, PetscInt, PetscBool *, const char **, const char **, PetscInt *, void (**)(), PetscInt *, const PetscInt **, void **); 281 PETSC_EXTERN PetscErrorCode DMPlexIsBoundaryPoint(DM, PetscInt, PetscBool *); 282 PETSC_EXTERN PetscErrorCode DMPlexCopyBoundary(DM, DM); 283 284 typedef struct { 285 DM dm; 286 Vec u; /* The base vector for the Jacbobian action J(u) x */ 287 Mat J; /* Preconditioner for testing */ 288 void *user; 289 } JacActionCtx; 290 291 PETSC_EXTERN PetscErrorCode DMPlexInsertBoundaryValuesFEM(DM, Vec); 292 PETSC_EXTERN PetscErrorCode DMPlexSetMaxProjectionHeight(DM, PetscInt); 293 PETSC_EXTERN PetscErrorCode DMPlexGetMaxProjectionHeight(DM, PetscInt*); 294 PETSC_EXTERN PetscErrorCode DMPlexProjectFunction(DM, void (**)(const PetscReal [], PetscScalar *, void *), void **, InsertMode, Vec); 295 PETSC_EXTERN PetscErrorCode DMPlexProjectFunctionLocal(DM, void (**)(const PetscReal [], PetscScalar *, void *), void **, InsertMode, Vec); 296 PETSC_EXTERN PetscErrorCode DMPlexProjectFieldLocal(DM, Vec, void (**)(const PetscScalar[], const PetscScalar[], const PetscScalar[], const PetscScalar[], const PetscScalar[], const PetscScalar[], const PetscReal [], PetscScalar []), InsertMode, Vec); 297 PETSC_EXTERN PetscErrorCode DMPlexComputeL2Diff(DM, void (**)(const PetscReal [], PetscScalar *, void *), void **, Vec, PetscReal *); 298 PETSC_EXTERN PetscErrorCode DMPlexComputeL2GradientDiff(DM, void (**)(const PetscReal [], const PetscReal [], PetscScalar *, void *), void **, Vec, const PetscReal [], PetscReal *); 299 PETSC_EXTERN PetscErrorCode DMPlexComputeL2FieldDiff(DM, void (**)(const PetscReal [], PetscScalar *, void *), void **, Vec, PetscReal[]); 300 PETSC_EXTERN PetscErrorCode DMPlexComputeIntegralFEM(DM, Vec, PetscReal *, void *); 301 PETSC_EXTERN PetscErrorCode DMPlexComputeInterpolatorFEM(DM, DM, Mat, void *); 302 PETSC_EXTERN PetscErrorCode DMPlexComputeInjectorFEM(DM, DM, VecScatter *, void *); 303 304 PETSC_EXTERN PetscErrorCode DMPlexSNESComputeResidualFEM(DM, Vec, Vec, void *); 305 PETSC_EXTERN PetscErrorCode DMPlexSNESComputeJacobianFEM(DM, Vec, Mat, Mat,void *); 306 307 PETSC_EXTERN PetscErrorCode DMPlexTSComputeRHSFunctionFVM(DM, PetscReal, Vec, Vec, void *); 308 PETSC_EXTERN PetscErrorCode DMPlexTSComputeIFunctionFEM(DM, PetscReal, Vec, Vec, Vec, void *); 309 310 PETSC_EXTERN PetscErrorCode DMPlexComputeRHSFunctionFVM(DM, PetscReal, Vec, Vec, void *); 311 312 /* anchors */ 313 PETSC_EXTERN PetscErrorCode DMPlexGetAnchors(DM, PetscSection*, IS*); 314 PETSC_EXTERN PetscErrorCode DMPlexSetAnchors(DM, PetscSection, IS); 315 /* tree */ 316 PETSC_EXTERN PetscErrorCode DMPlexSetReferenceTree(DM, DM); 317 PETSC_EXTERN PetscErrorCode DMPlexGetReferenceTree(DM, DM*); 318 PETSC_EXTERN PetscErrorCode DMPlexReferenceTreeGetChildSymmetry(DM, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt *, PetscInt *); 319 PETSC_EXTERN PetscErrorCode DMPlexCreateDefaultReferenceTree(MPI_Comm, PetscInt, PetscBool, DM*); 320 PETSC_EXTERN PetscErrorCode DMPlexSetTree(DM, PetscSection, PetscInt [], PetscInt []); 321 PETSC_EXTERN PetscErrorCode DMPlexGetTree(DM, PetscSection *, PetscInt *[], PetscInt *[], PetscSection *, PetscInt *[]); 322 PETSC_EXTERN PetscErrorCode DMPlexGetTreeParent(DM, PetscInt, PetscInt *, PetscInt *); 323 PETSC_EXTERN PetscErrorCode DMPlexGetTreeChildren(DM, PetscInt, PetscInt *, const PetscInt *[]); 324 PETSC_EXTERN PetscErrorCode DMPlexTreeRefineCell(DM, PetscInt, DM *); 325 #endif 326