1 /* 2 An index set is a generalization of a subset of integers. Index sets 3 are used for defining scatters and gathers. 4 */ 5 #if !defined(__PETSCIS_H) 6 #define __PETSCIS_H 7 #include "petscsys.h" 8 PETSC_EXTERN_CXX_BEGIN 9 10 extern PETSCVEC_DLLEXPORT PetscClassId IS_CLASSID; 11 12 EXTERN PetscErrorCode PETSCVEC_DLLEXPORT ISInitializePackage(const char[]); 13 14 /*S 15 IS - Abstract PETSc object that allows indexing. 16 17 Level: beginner 18 19 Concepts: indexing, stride 20 21 .seealso: ISCreateGeneral(), ISCreateBlock(), ISCreateStride(), ISGetIndices(), ISDestroy() 22 S*/ 23 typedef struct _p_IS* IS; 24 25 /*E 26 ISType - String with the name of a PETSc vector or the creation function 27 with an optional dynamic library name, for example 28 http://www.mcs.anl.gov/petsc/lib.a:myveccreate() 29 30 Level: beginner 31 32 .seealso: ISSetType(), IS 33 E*/ 34 #define ISType char* 35 #define ISGENERAL "general" 36 #define ISSTRIDE "stride" 37 #define ISBLOCK "block" 38 39 /* Dynamic creation and loading functions */ 40 extern PetscFList ISList; 41 extern PetscBool ISRegisterAllCalled; 42 EXTERN PetscErrorCode PETSCVEC_DLLEXPORT ISSetType(IS, const ISType); 43 EXTERN PetscErrorCode PETSCVEC_DLLEXPORT ISGetType(IS, const ISType *); 44 EXTERN PetscErrorCode PETSCVEC_DLLEXPORT ISRegister(const char[],const char[],const char[],PetscErrorCode (*)(IS)); 45 EXTERN PetscErrorCode PETSCVEC_DLLEXPORT ISRegisterAll(const char []); 46 EXTERN PetscErrorCode PETSCVEC_DLLEXPORT ISRegisterDestroy(void); 47 EXTERN PetscErrorCode PETSCVEC_DLLEXPORT ISCreate(MPI_Comm,IS*); 48 49 /*MC 50 ISRegisterDynamic - Adds a new vector component implementation 51 52 Synopsis: 53 PetscErrorCode ISRegisterDynamic(const char *name, const char *path, const char *func_name, PetscErrorCode (*create_func)(IS)) 54 55 Not Collective 56 57 Input Parameters: 58 + name - The name of a new user-defined creation routine 59 . path - The path (either absolute or relative) of the library containing this routine 60 . func_name - The name of routine to create method context 61 - create_func - The creation routine itself 62 63 Notes: 64 ISRegisterDynamic() may be called multiple times to add several user-defined vectors 65 66 If dynamic libraries are used, then the fourth input argument (routine_create) is ignored. 67 68 Sample usage: 69 .vb 70 ISRegisterDynamic("my_is","/home/username/my_lib/lib/libO/solaris/libmy.a", "MyIStorCreate", MyIStorCreate); 71 .ve 72 73 Then, your vector type can be chosen with the procedural interface via 74 .vb 75 ISCreate(MPI_Comm, IS *); 76 ISSetType(IS,"my_vector_name"); 77 .ve 78 or at runtime via the option 79 .vb 80 -vec_type my_vector_name 81 .ve 82 83 Notes: $PETSC_ARCH occuring in pathname will be replaced with appropriate values. 84 If your function is not being put into a shared library then use ISRegister() instead 85 86 Level: advanced 87 88 .keywords: IS, register 89 .seealso: ISRegisterAll(), ISRegisterDestroy(), ISRegister() 90 M*/ 91 #if defined(PETSC_USE_DYNAMIC_LIBRARIES) 92 #define ISRegisterDynamic(a,b,c,d) ISRegister(a,b,c,0) 93 #else 94 #define ISRegisterDynamic(a,b,c,d) ISRegister(a,b,c,d) 95 #endif 96 97 /* 98 Default index set data structures that PETSc provides. 99 */ 100 EXTERN PetscErrorCode PETSCVEC_DLLEXPORT ISCreateGeneral(MPI_Comm,PetscInt,const PetscInt[],PetscCopyMode,IS *); 101 EXTERN PetscErrorCode PETSCVEC_DLLEXPORT ISGeneralSetIndices(IS,PetscInt,const PetscInt[],PetscCopyMode); 102 EXTERN PetscErrorCode PETSCVEC_DLLEXPORT ISCreateBlock(MPI_Comm,PetscInt,PetscInt,const PetscInt[],PetscCopyMode,IS *); 103 EXTERN PetscErrorCode PETSCVEC_DLLEXPORT ISBlockSetIndices(IS,PetscInt,PetscInt,const PetscInt[],PetscCopyMode); 104 EXTERN PetscErrorCode PETSCVEC_DLLEXPORT ISCreateStride(MPI_Comm,PetscInt,PetscInt,PetscInt,IS *); 105 EXTERN PetscErrorCode PETSCVEC_DLLEXPORT ISStrideSetStride(IS,PetscInt,PetscInt,PetscInt); 106 107 EXTERN PetscErrorCode PETSCVEC_DLLEXPORT ISDestroy(IS); 108 109 EXTERN PetscErrorCode PETSCVEC_DLLEXPORT ISSetPermutation(IS); 110 EXTERN PetscErrorCode PETSCVEC_DLLEXPORT ISPermutation(IS,PetscBool *); 111 EXTERN PetscErrorCode PETSCVEC_DLLEXPORT ISSetIdentity(IS); 112 EXTERN PetscErrorCode PETSCVEC_DLLEXPORT ISIdentity(IS,PetscBool *); 113 114 EXTERN PetscErrorCode PETSCVEC_DLLEXPORT ISGetIndices(IS,const PetscInt *[]); 115 EXTERN PetscErrorCode PETSCVEC_DLLEXPORT ISRestoreIndices(IS,const PetscInt *[]); 116 EXTERN PetscErrorCode PETSCVEC_DLLEXPORT ISGetSize(IS,PetscInt *); 117 EXTERN PetscErrorCode PETSCVEC_DLLEXPORT ISGetLocalSize(IS,PetscInt *); 118 EXTERN PetscErrorCode PETSCVEC_DLLEXPORT ISInvertPermutation(IS,PetscInt,IS*); 119 EXTERN PetscErrorCode PETSCVEC_DLLEXPORT ISView(IS,PetscViewer); 120 EXTERN PetscErrorCode PETSCVEC_DLLEXPORT ISEqual(IS,IS,PetscBool *); 121 EXTERN PetscErrorCode PETSCVEC_DLLEXPORT ISSort(IS); 122 EXTERN PetscErrorCode PETSCVEC_DLLEXPORT ISSorted(IS,PetscBool *); 123 EXTERN PetscErrorCode PETSCVEC_DLLEXPORT ISDifference(IS,IS,IS*); 124 EXTERN PetscErrorCode PETSCVEC_DLLEXPORT ISSum(IS,IS,IS*); 125 EXTERN PetscErrorCode PETSCVEC_DLLEXPORT ISExpand(IS,IS,IS*); 126 127 EXTERN PetscErrorCode PETSCVEC_DLLEXPORT ISBlock(IS,PetscBool *); 128 EXTERN PetscErrorCode PETSCVEC_DLLEXPORT ISBlockGetIndices(IS,const PetscInt *[]); 129 EXTERN PetscErrorCode PETSCVEC_DLLEXPORT ISBlockRestoreIndices(IS,const PetscInt *[]); 130 EXTERN PetscErrorCode PETSCVEC_DLLEXPORT ISBlockGetLocalSize(IS,PetscInt *); 131 EXTERN PetscErrorCode PETSCVEC_DLLEXPORT ISBlockGetSize(IS,PetscInt *); 132 EXTERN PetscErrorCode PETSCVEC_DLLEXPORT ISBlockGetBlockSize(IS,PetscInt *); 133 134 EXTERN PetscErrorCode PETSCVEC_DLLEXPORT ISStride(IS,PetscBool *); 135 EXTERN PetscErrorCode PETSCVEC_DLLEXPORT ISStrideGetInfo(IS,PetscInt *,PetscInt*); 136 137 EXTERN PetscErrorCode PETSCVEC_DLLEXPORT ISToGeneral(IS); 138 139 EXTERN PetscErrorCode PETSCVEC_DLLEXPORT ISDuplicate(IS,IS*); 140 EXTERN PetscErrorCode PETSCVEC_DLLEXPORT ISCopy(IS,IS); 141 EXTERN PetscErrorCode PETSCVEC_DLLEXPORT ISAllGather(IS,IS*); 142 EXTERN PetscErrorCode PETSCVEC_DLLEXPORT ISComplement(IS,PetscInt,PetscInt,IS*); 143 EXTERN PetscErrorCode PETSCVEC_DLLEXPORT ISAllGatherIndices(MPI_Comm,PetscInt,const PetscInt[],PetscInt*,PetscInt*[]); 144 145 /* --------------------------------------------------------------------------*/ 146 extern PETSCVEC_DLLEXPORT PetscClassId IS_LTOGM_CLASSID; 147 148 /*S 149 ISLocalToGlobalMapping - mappings from an arbitrary 150 local ordering from 0 to n-1 to a global PETSc ordering 151 used by a vector or matrix. 152 153 Level: intermediate 154 155 Note: mapping from Local to Global is scalable; but Global 156 to Local may not be if the range of global values represented locally 157 is very large. 158 159 Note: the ISLocalToGlobalMapping is actually a private object; it is included 160 here for the MACRO ISLocalToGlobalMappingApply() to allow it to be inlined since 161 it is used so often. 162 163 .seealso: ISLocalToGlobalMappingCreate() 164 S*/ 165 struct _p_ISLocalToGlobalMapping{ 166 PETSCHEADER(int); 167 PetscInt n; /* number of local indices */ 168 PetscInt *indices; /* global index of each local index */ 169 PetscInt globalstart; /* first global referenced in indices */ 170 PetscInt globalend; /* last + 1 global referenced in indices */ 171 PetscInt *globals; /* local index for each global index between start and end */ 172 }; 173 typedef struct _p_ISLocalToGlobalMapping* ISLocalToGlobalMapping; 174 175 /*E 176 ISGlobalToLocalMappingType - Indicates if missing global indices are 177 178 IS_GTOLM_MASK - missing global indices are replaced with -1 179 IS_GTOLM_DROP - missing global indices are dropped 180 181 Level: beginner 182 183 .seealso: ISGlobalToLocalMappingApply() 184 185 E*/ 186 typedef enum {IS_GTOLM_MASK,IS_GTOLM_DROP} ISGlobalToLocalMappingType; 187 188 EXTERN PetscErrorCode PETSCVEC_DLLEXPORT ISLocalToGlobalMappingCreate(MPI_Comm,PetscInt,const PetscInt[],PetscCopyMode,ISLocalToGlobalMapping*); 189 EXTERN PetscErrorCode PETSCVEC_DLLEXPORT ISLocalToGlobalMappingCreateIS(IS,ISLocalToGlobalMapping *); 190 EXTERN PetscErrorCode PETSCVEC_DLLEXPORT ISLocalToGlobalMappingView(ISLocalToGlobalMapping,PetscViewer); 191 EXTERN PetscErrorCode PETSCVEC_DLLEXPORT ISLocalToGlobalMappingDestroy(ISLocalToGlobalMapping); 192 EXTERN PetscErrorCode PETSCVEC_DLLEXPORT ISLocalToGlobalMappingApplyIS(ISLocalToGlobalMapping,IS,IS*); 193 EXTERN PetscErrorCode PETSCVEC_DLLEXPORT ISGlobalToLocalMappingApply(ISLocalToGlobalMapping,ISGlobalToLocalMappingType,PetscInt,const PetscInt[],PetscInt*,PetscInt[]); 194 EXTERN PetscErrorCode PETSCVEC_DLLEXPORT ISLocalToGlobalMappingGetSize(ISLocalToGlobalMapping,PetscInt*); 195 EXTERN PetscErrorCode PETSCVEC_DLLEXPORT ISLocalToGlobalMappingGetInfo(ISLocalToGlobalMapping,PetscInt*,PetscInt*[],PetscInt*[],PetscInt**[]); 196 EXTERN PetscErrorCode PETSCVEC_DLLEXPORT ISLocalToGlobalMappingRestoreInfo(ISLocalToGlobalMapping,PetscInt*,PetscInt*[],PetscInt*[],PetscInt**[]); 197 EXTERN PetscErrorCode PETSCVEC_DLLEXPORT ISLocalToGlobalMappingBlock(ISLocalToGlobalMapping,PetscInt,ISLocalToGlobalMapping*); 198 199 PETSC_STATIC_INLINE PetscErrorCode ISLocalToGlobalMappingApply(ISLocalToGlobalMapping mapping,PetscInt N,const PetscInt in[],PetscInt out[]) 200 { 201 PetscInt i,Nmax = mapping->n; 202 const PetscInt *idx = mapping->indices; 203 PetscFunctionBegin; 204 for (i=0; i<N; i++) { 205 if (in[i] < 0) {out[i] = in[i]; continue;} 206 if (in[i] >= Nmax) SETERRQ3(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Local index %D too large %D (max) at %D",in[i],Nmax,i); 207 out[i] = idx[in[i]]; 208 } 209 PetscFunctionReturn(0); 210 } 211 212 /* --------------------------------------------------------------------------*/ 213 /*E 214 ISColoringType - determines if the coloring is for the entire parallel grid/graph/matrix 215 or for just the local ghosted portion 216 217 Level: beginner 218 219 $ IS_COLORING_GLOBAL - does not include the colors for ghost points, this is used when the function 220 $ is called synchronously in parallel. This requires generating a "parallel coloring". 221 $ IS_COLORING_GHOSTED - includes colors for ghost points, this is used when the function can be called 222 $ seperately on individual processes with the ghost points already filled in. Does not 223 $ require a "parallel coloring", rather each process colors its local + ghost part. 224 $ Using this can result in much less parallel communication. In the paradigm of 225 $ DMGetLocalVector() and DMGetGlobalVector() this could be called IS_COLORING_LOCAL 226 227 .seealso: DAGetColoring() 228 E*/ 229 typedef enum {IS_COLORING_GLOBAL,IS_COLORING_GHOSTED} ISColoringType; 230 extern const char *ISColoringTypes[]; 231 typedef unsigned PETSC_IS_COLOR_VALUE_TYPE ISColoringValue; 232 EXTERN PetscErrorCode PETSCVEC_DLLEXPORT ISAllGatherColors(MPI_Comm,PetscInt,ISColoringValue*,PetscInt*,ISColoringValue*[]); 233 234 /*S 235 ISColoring - sets of IS's that define a coloring 236 of the underlying indices 237 238 Level: intermediate 239 240 Notes: 241 One should not access the *is records below directly because they may not yet 242 have been created. One should use ISColoringGetIS() to make sure they are 243 created when needed. 244 245 .seealso: ISColoringCreate(), ISColoringGetIS(), ISColoringView(), ISColoringGetIS() 246 S*/ 247 struct _n_ISColoring { 248 PetscInt refct; 249 PetscInt n; /* number of colors */ 250 IS *is; /* for each color indicates columns */ 251 MPI_Comm comm; 252 ISColoringValue *colors; /* for each column indicates color */ 253 PetscInt N; /* number of columns */ 254 ISColoringType ctype; 255 }; 256 typedef struct _n_ISColoring* ISColoring; 257 258 EXTERN PetscErrorCode PETSCVEC_DLLEXPORT ISColoringCreate(MPI_Comm,PetscInt,PetscInt,const ISColoringValue[],ISColoring*); 259 EXTERN PetscErrorCode PETSCVEC_DLLEXPORT ISColoringDestroy(ISColoring); 260 EXTERN PetscErrorCode PETSCVEC_DLLEXPORT ISColoringView(ISColoring,PetscViewer); 261 EXTERN PetscErrorCode PETSCVEC_DLLEXPORT ISColoringGetIS(ISColoring,PetscInt*,IS*[]); 262 EXTERN PetscErrorCode PETSCVEC_DLLEXPORT ISColoringRestoreIS(ISColoring,IS*[]); 263 #define ISColoringReference(coloring) ((coloring)->refct++,0) 264 #define ISColoringSetType(coloring,type) ((coloring)->ctype = type,0) 265 266 /* --------------------------------------------------------------------------*/ 267 268 EXTERN PetscErrorCode PETSCVEC_DLLEXPORT ISPartitioningToNumbering(IS,IS*); 269 EXTERN PetscErrorCode PETSCVEC_DLLEXPORT ISPartitioningCount(IS,PetscInt,PetscInt[]); 270 271 EXTERN PetscErrorCode PETSCVEC_DLLEXPORT ISCompressIndicesGeneral(PetscInt,PetscInt,PetscInt,const IS[],IS[]); 272 EXTERN PetscErrorCode PETSCVEC_DLLEXPORT ISCompressIndicesSorted(PetscInt,PetscInt,PetscInt,const IS[],IS[]); 273 EXTERN PetscErrorCode PETSCVEC_DLLEXPORT ISExpandIndicesGeneral(PetscInt,PetscInt,PetscInt,const IS[],IS[]); 274 275 276 PETSC_EXTERN_CXX_END 277 #endif 278