12eac72dbSBarry Smith /*
22eac72dbSBarry Smith Include file for the matrix component of PETSc
32eac72dbSBarry Smith */
4a4963045SJacob Faibussowitsch #pragma once
5ac09b921SBarry Smith
62c8e378dSBarry Smith #include <petscvec.h>
72eac72dbSBarry Smith
8ac09b921SBarry Smith /* SUBMANSEC = Mat */
9ac09b921SBarry Smith
10d9274352SBarry Smith /*S
118f6c3df8SBarry Smith Mat - Abstract PETSc matrix object used to manage all linear operators in PETSc, even those without
12af27ebaaSBarry Smith an explicit sparse representation (such as matrix-free operators). Also used to hold representations of graphs
13af27ebaaSBarry Smith for graph operations such as coloring, `MatColoringCreate()`
142eac72dbSBarry Smith
15d91e6319SBarry Smith Level: beginner
16d91e6319SBarry Smith
172ef1f0ffSBarry Smith Note:
181cc06b55SBarry Smith See [](doc_matrix), [](ch_matrices) and `MatType` for available matrix types
192ef1f0ffSBarry Smith
201cc06b55SBarry Smith .seealso: [](doc_matrix), [](ch_matrices), `MatCreate()`, `MatType`, `MatSetType()`, `MatDestroy()`
21d9274352SBarry Smith S*/
22d9274352SBarry Smith typedef struct _p_Mat *Mat;
23d9274352SBarry Smith
2476bdecfbSBarry Smith /*J
250b4b7b1cSBarry Smith MatType - String with the name of a PETSc matrix type. These are all the matrix formats that PETSc provides.
26d9274352SBarry Smith
27d9274352SBarry Smith Level: beginner
28d9274352SBarry Smith
290b4b7b1cSBarry Smith Notes:
302ef1f0ffSBarry Smith [](doc_matrix) for a table of available matrix types
312ef1f0ffSBarry Smith
32ce78bad3SBarry Smith Use `MatSetType()` or the options database keys `-mat_type` or `-dm_mat_type` to set the matrix format to use for a given `Mat`
330b4b7b1cSBarry Smith
341cc06b55SBarry Smith .seealso: [](doc_matrix), [](ch_matrices), `MatSetType()`, `Mat`, `MatSolverType`, `MatRegister()`
3576bdecfbSBarry Smith J*/
3619fd82e9SBarry Smith typedef const char *MatType;
37273d9f13SBarry Smith #define MATSAME "same"
385a11e1b2SBarry Smith #define MATMAIJ "maij"
39273d9f13SBarry Smith #define MATSEQMAIJ "seqmaij"
40273d9f13SBarry Smith #define MATMPIMAIJ "mpimaij"
4149bd79ccSDebojyoti Ghosh #define MATKAIJ "kaij"
4249bd79ccSDebojyoti Ghosh #define MATSEQKAIJ "seqkaij"
4349bd79ccSDebojyoti Ghosh #define MATMPIKAIJ "mpikaij"
44273d9f13SBarry Smith #define MATIS "is"
455a11e1b2SBarry Smith #define MATAIJ "aij"
46273d9f13SBarry Smith #define MATSEQAIJ "seqaij"
47273d9f13SBarry Smith #define MATMPIAIJ "mpiaij"
485a11e1b2SBarry Smith #define MATAIJCRL "aijcrl"
495a11e1b2SBarry Smith #define MATSEQAIJCRL "seqaijcrl"
505a11e1b2SBarry Smith #define MATMPIAIJCRL "mpiaijcrl"
519ae82921SPaul Mullowney #define MATAIJCUSPARSE "aijcusparse"
529ae82921SPaul Mullowney #define MATSEQAIJCUSPARSE "seqaijcusparse"
539ae82921SPaul Mullowney #define MATMPIAIJCUSPARSE "mpiaijcusparse"
5447d993e7Ssuyashtn #define MATAIJHIPSPARSE "aijhipsparse"
5547d993e7Ssuyashtn #define MATSEQAIJHIPSPARSE "seqaijhipsparse"
5647d993e7Ssuyashtn #define MATMPIAIJHIPSPARSE "mpiaijhipsparse"
578c3ff71bSJunchao Zhang #define MATAIJKOKKOS "aijkokkos"
588c3ff71bSJunchao Zhang #define MATSEQAIJKOKKOS "seqaijkokkos"
598c3ff71bSJunchao Zhang #define MATMPIAIJKOKKOS "mpiaijkokkos"
60d67ff14aSKarl Rupp #define MATAIJVIENNACL "aijviennacl"
61d67ff14aSKarl Rupp #define MATSEQAIJVIENNACL "seqaijviennacl"
62d67ff14aSKarl Rupp #define MATMPIAIJVIENNACL "mpiaijviennacl"
635a11e1b2SBarry Smith #define MATAIJPERM "aijperm"
645a11e1b2SBarry Smith #define MATSEQAIJPERM "seqaijperm"
655a11e1b2SBarry Smith #define MATMPIAIJPERM "mpiaijperm"
664dfdc2d9SRichard Tran Mills #define MATAIJSELL "aijsell"
674dfdc2d9SRichard Tran Mills #define MATSEQAIJSELL "seqaijsell"
684dfdc2d9SRichard Tran Mills #define MATMPIAIJSELL "mpiaijsell"
694a2a386eSRichard Tran Mills #define MATAIJMKL "aijmkl"
704a2a386eSRichard Tran Mills #define MATSEQAIJMKL "seqaijmkl"
714a2a386eSRichard Tran Mills #define MATMPIAIJMKL "mpiaijmkl"
72b5b72c8aSIrina Sokolova #define MATBAIJMKL "baijmkl"
73b5b72c8aSIrina Sokolova #define MATSEQBAIJMKL "seqbaijmkl"
74b5b72c8aSIrina Sokolova #define MATMPIBAIJMKL "mpibaijmkl"
75273d9f13SBarry Smith #define MATSHELL "shell"
76c1fff1c6SRichard Tran Mills #define MATCENTERING "centering"
775a11e1b2SBarry Smith #define MATDENSE "dense"
78637a0070SStefano Zampini #define MATDENSECUDA "densecuda"
7947d993e7Ssuyashtn #define MATDENSEHIP "densehip"
80209238afSKris Buschelman #define MATSEQDENSE "seqdense"
81bfc799aaSStefano Zampini #define MATSEQDENSECUDA "seqdensecuda"
8247d993e7Ssuyashtn #define MATSEQDENSEHIP "seqdensehip"
83273d9f13SBarry Smith #define MATMPIDENSE "mpidense"
84637a0070SStefano Zampini #define MATMPIDENSECUDA "mpidensecuda"
8547d993e7Ssuyashtn #define MATMPIDENSEHIP "mpidensehip"
86db31f6deSJed Brown #define MATELEMENTAL "elemental"
87d24d4204SJose E. Roman #define MATSCALAPACK "scalapack"
885a11e1b2SBarry Smith #define MATBAIJ "baij"
89273d9f13SBarry Smith #define MATSEQBAIJ "seqbaij"
90273d9f13SBarry Smith #define MATMPIBAIJ "mpibaij"
91273d9f13SBarry Smith #define MATMPIADJ "mpiadj"
925a11e1b2SBarry Smith #define MATSBAIJ "sbaij"
93273d9f13SBarry Smith #define MATSEQSBAIJ "seqsbaij"
94273d9f13SBarry Smith #define MATMPISBAIJ "mpisbaij"
95cebc7f6cSBarry Smith #define MATMFFD "mffd"
96c8a8475eSBarry Smith #define MATNORMAL "normal"
97c5e4d11fSDmitry Karpeev #define MATNORMALHERMITIAN "normalh"
98ab92ecdeSBarry Smith #define MATLRC "lrc"
992a6744ebSBarry Smith #define MATSCATTER "scatter"
100421e10b8SBarry Smith #define MATBLOCKMAT "blockmat"
101793850ffSBarry Smith #define MATCOMPOSITE "composite"
1021f8c7532SHong Zhang #define MATFFT "fft"
1031f8c7532SHong Zhang #define MATFFTW "fftw"
104e133240eSMatthew G Knepley #define MATSEQCUFFT "seqcufft"
10547d993e7Ssuyashtn #define MATSEQHIPFFT "seqhipfft"
106edd03b47SJacob Faibussowitsch #define MATTRANSPOSEMAT PETSC_DEPRECATED_MACRO(3, 18, 0, "MATTRANSPOSEVIRTUAL", ) "transpose"
107013e2dc7SBarry Smith #define MATTRANSPOSEVIRTUAL "transpose"
108013e2dc7SBarry Smith #define MATHERMITIANTRANSPOSEVIRTUAL "hermitiantranspose"
10972ca8751SBarry Smith #define MATSCHURCOMPLEMENT "schurcomplement"
1101d6018f0SLisandro Dalcin #define MATPYTHON "python"
11163c07aadSStefano Zampini #define MATHYPRE "hypre"
112f91d8e95SBarry Smith #define MATHYPRESTRUCT "hyprestruct"
113a9e6138eSGlenn Hammond #define MATHYPRESSTRUCT "hypresstruct"
114ee1cef2cSJed Brown #define MATSUBMATRIX "submatrix"
1152c0dbf93SJed Brown #define MATLOCALREF "localref"
116d8588912SDave May #define MATNEST "nest"
117c094ef40SMatthew G. Knepley #define MATPREALLOCATOR "preallocator"
118d4002b98SHong Zhang #define MATSELL "sell"
119d4002b98SHong Zhang #define MATSEQSELL "seqsell"
120d4002b98SHong Zhang #define MATMPISELL "mpisell"
1212d1451d4SHong Zhang #define MATSELLCUDA "sellcuda"
1222d1451d4SHong Zhang #define MATSEQSELLCUDA "seqsellcuda"
1232d1451d4SHong Zhang #define MATMPISELLCUDA "mpisellcuda"
124773bf0f6SHong Zhang #define MATSELLHIP "sellhip"
125773bf0f6SHong Zhang #define MATSEQSELLHIP "seqsellhip"
126773bf0f6SHong Zhang #define MATMPISELLHIP "mpisellhip"
127a3b2e22bSHong Zhang #define MATDUMMY "dummy"
128cd929ea3SAlp Dener #define MATLMVM "lmvm"
12978e4361aSAlp Dener #define MATLMVMDFP "lmvmdfp"
130bbb72809SHansol Suh #define MATLMVMDDFP "lmvmddfp"
13178e4361aSAlp Dener #define MATLMVMBFGS "lmvmbfgs"
132bbb72809SHansol Suh #define MATLMVMDBFGS "lmvmdbfgs"
133bbb72809SHansol Suh #define MATLMVMDQN "lmvmdqn"
13478e4361aSAlp Dener #define MATLMVMSR1 "lmvmsr1"
135864588a7SAlp Dener #define MATLMVMBROYDEN "lmvmbroyden"
136864588a7SAlp Dener #define MATLMVMBADBROYDEN "lmvmbadbroyden"
137864588a7SAlp Dener #define MATLMVMSYMBROYDEN "lmvmsymbroyden"
138864588a7SAlp Dener #define MATLMVMSYMBADBROYDEN "lmvmsymbadbroyden"
139864588a7SAlp Dener #define MATLMVMDIAGBROYDEN "lmvmdiagbroyden"
1403423f386SBarry Smith #define MATCONSTANTDIAGONAL "constantdiagonal"
141345a4b08SToby Isaac #define MATDIAGONAL "diagonal"
142c7a4214aSPierre Jolivet #define MATHTOOL "htool"
14353022affSStefano Zampini #define MATH2OPUS "h2opus"
144773941d6SBarry Smith
14576bdecfbSBarry Smith /*J
146af27ebaaSBarry Smith MatSolverType - String with the name of a PETSc factorization-based matrix solver type.
1479989ab13SBarry Smith
148c2b89b5dSBarry Smith For example: "petsc" indicates what PETSc provides, "superlu_dist" the parallel SuperLU_DIST package etc
1499989ab13SBarry Smith
1509989ab13SBarry Smith Level: beginner
1519989ab13SBarry Smith
1522ef1f0ffSBarry Smith Note:
15316a05f60SBarry Smith `MATSOLVERUMFPACK`, `MATSOLVERCHOLMOD`, `MATSOLVERKLU`, `MATSOLVERSPQR` form the SuiteSparse package; you can use `--download-suitesparse` as
15416a05f60SBarry Smith a ./configure option to install them
155c7ccbb75SBarry Smith
1561cc06b55SBarry Smith .seealso: [](sec_matfactor), [](ch_matrices), `MatGetFactor()`, `PCFactorSetMatSolverType()`, `PCFactorGetMatSolverType()`
15776bdecfbSBarry Smith J*/
158ea799195SBarry Smith typedef const char *MatSolverType;
1592692d6eeSBarry Smith #define MATSOLVERSUPERLU "superlu"
1602692d6eeSBarry Smith #define MATSOLVERSUPERLU_DIST "superlu_dist"
16108f5efcfSPieter Ghysels #define MATSOLVERSTRUMPACK "strumpack"
1622692d6eeSBarry Smith #define MATSOLVERUMFPACK "umfpack"
16320db9a53SJed Brown #define MATSOLVERCHOLMOD "cholmod"
164d89f5e7aSBarry Smith #define MATSOLVERKLU "klu"
165d89f5e7aSBarry Smith #define MATSOLVERELEMENTAL "elemental"
166d24d4204SJose E. Roman #define MATSOLVERSCALAPACK "scalapack"
1672692d6eeSBarry Smith #define MATSOLVERESSL "essl"
1682692d6eeSBarry Smith #define MATSOLVERLUSOL "lusol"
1692692d6eeSBarry Smith #define MATSOLVERMUMPS "mumps"
170d615f992SSatish Balay #define MATSOLVERMKL_PARDISO "mkl_pardiso"
171d305a81bSVasiliy Kozyrev #define MATSOLVERMKL_CPARDISO "mkl_cpardiso"
1722692d6eeSBarry Smith #define MATSOLVERPASTIX "pastix"
1732692d6eeSBarry Smith #define MATSOLVERMATLAB "matlab"
1742692d6eeSBarry Smith #define MATSOLVERPETSC "petsc"
1752692d6eeSBarry Smith #define MATSOLVERBAS "bas"
1769ae82921SPaul Mullowney #define MATSOLVERCUSPARSE "cusparse"
177bfc799aaSStefano Zampini #define MATSOLVERCUDA "cuda"
17847d993e7Ssuyashtn #define MATSOLVERHIPSPARSE "hipsparse"
17947d993e7Ssuyashtn #define MATSOLVERHIP "hip"
180930e68a5SMark Adams #define MATSOLVERKOKKOS "kokkos"
181a2fc1e05SToby Isaac #define MATSOLVERSPQR "spqr"
1821dd4f53aSPierre Jolivet #define MATSOLVERHTOOL "htool"
183c0cdd4a1SDahai Guo
184b24902e0SBarry Smith /*E
185b24902e0SBarry Smith MatFactorType - indicates what type of factorization is requested
186b24902e0SBarry Smith
1872ef1f0ffSBarry Smith Values:
1882ef1f0ffSBarry Smith + `MAT_FACTOR_LU` - LU factorization
1892ef1f0ffSBarry Smith . `MAT_FACTOR_CHOLESKY` - Cholesky factorization
1902ef1f0ffSBarry Smith . `MAT_FACTOR_ILU` - ILU factorization
1912ef1f0ffSBarry Smith . `MAT_FACTOR_ICC` - incomplete Cholesky factorization
1922ef1f0ffSBarry Smith . `MAT_FACTOR_ILUDT` - ILU factorization with drop tolerance
1932ef1f0ffSBarry Smith - `MAT_FACTOR_QR` - QR factorization
194b24902e0SBarry Smith
19516a05f60SBarry Smith Level: beginner
19616a05f60SBarry Smith
1971cc06b55SBarry Smith .seealso: [](ch_matrices), `MatSolverType`, `MatGetFactor()`, `MatGetFactorAvailable()`, `MatSolverTypeRegister()`
198b24902e0SBarry Smith E*/
1999371c9d4SSatish Balay typedef enum {
2009371c9d4SSatish Balay MAT_FACTOR_NONE,
2019371c9d4SSatish Balay MAT_FACTOR_LU,
2029371c9d4SSatish Balay MAT_FACTOR_CHOLESKY,
2039371c9d4SSatish Balay MAT_FACTOR_ILU,
2049371c9d4SSatish Balay MAT_FACTOR_ICC,
2059371c9d4SSatish Balay MAT_FACTOR_ILUDT,
2069371c9d4SSatish Balay MAT_FACTOR_QR,
2079371c9d4SSatish Balay MAT_FACTOR_NUM_TYPES
2089371c9d4SSatish Balay } MatFactorType;
209014dd563SJed Brown PETSC_EXTERN const char *const MatFactorTypes[];
210e92e720dSBarry Smith
211ea799195SBarry Smith PETSC_EXTERN PetscErrorCode MatGetFactor(Mat, MatSolverType, MatFactorType, Mat *);
212ea799195SBarry Smith PETSC_EXTERN PetscErrorCode MatGetFactorAvailable(Mat, MatSolverType, MatFactorType, PetscBool *);
213f73b0415SBarry Smith PETSC_EXTERN PetscErrorCode MatFactorGetCanUseOrdering(Mat, PetscBool *);
MatFactorGetUseOrdering(Mat A,PetscBool * b)214edd03b47SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION(3, 15, 0, "MatFactorGetCanUseOrdering()", ) static inline PetscErrorCode MatFactorGetUseOrdering(Mat A, PetscBool *b)
215d71ae5a4SJacob Faibussowitsch {
2169371c9d4SSatish Balay return MatFactorGetCanUseOrdering(A, b);
2179371c9d4SSatish Balay }
218ea799195SBarry Smith PETSC_EXTERN PetscErrorCode MatFactorGetSolverType(Mat, MatSolverType *);
219014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetFactorType(Mat, MatFactorType *);
2207abd51d3SMatthew G. Knepley PETSC_EXTERN PetscErrorCode MatSetFactorType(Mat, MatFactorType);
221348d23efSPierre Jolivet PETSC_EXTERN_TYPEDEF typedef PetscErrorCode MatSolverFn(Mat, MatFactorType, Mat *);
2228434afd1SBarry Smith PETSC_EXTERN_TYPEDEF typedef MatSolverFn *MatSolverFunction;
22307e0ed13SBarry Smith
2248434afd1SBarry Smith PETSC_EXTERN PetscErrorCode MatSolverTypeRegister(MatSolverType, MatType, MatFactorType, MatSolverFn *);
2258434afd1SBarry Smith PETSC_EXTERN PetscErrorCode MatSolverTypeGet(MatSolverType, MatType, MatFactorType, PetscBool *, PetscBool *, MatSolverFn **);
226edd03b47SJacob Faibussowitsch typedef MatSolverType MatSolverPackage PETSC_DEPRECATED_TYPEDEF(3, 9, 0, "MatSolverType", );
MatSolverPackageRegister(MatSolverType stype,MatType mtype,MatFactorType ftype,MatSolverFn * f)2278434afd1SBarry Smith PETSC_DEPRECATED_FUNCTION(3, 9, 0, "MatSolverTypeRegister()", ) static inline PetscErrorCode MatSolverPackageRegister(MatSolverType stype, MatType mtype, MatFactorType ftype, MatSolverFn *f)
228d71ae5a4SJacob Faibussowitsch {
2299371c9d4SSatish Balay return MatSolverTypeRegister(stype, mtype, ftype, f);
2309371c9d4SSatish Balay }
MatSolverPackageGet(MatSolverType stype,MatType mtype,MatFactorType ftype,PetscBool * foundmtype,PetscBool * foundstype,MatSolverFn ** f)2318434afd1SBarry Smith PETSC_DEPRECATED_FUNCTION(3, 9, 0, "MatSolverTypeGet()", ) static inline PetscErrorCode MatSolverPackageGet(MatSolverType stype, MatType mtype, MatFactorType ftype, PetscBool *foundmtype, PetscBool *foundstype, MatSolverFn **f)
232d71ae5a4SJacob Faibussowitsch {
2339371c9d4SSatish Balay return MatSolverTypeGet(stype, mtype, ftype, foundmtype, foundstype, f);
2349371c9d4SSatish Balay }
2359989ab13SBarry Smith
2364222ddf1SHong Zhang /*E
23795bd0b28SBarry Smith MatProductType - indicates what type of matrix product to compute
2384222ddf1SHong Zhang
2392ef1f0ffSBarry Smith Values:
2402ef1f0ffSBarry Smith + `MATPRODUCT_AB` - product of two matrices
2412ef1f0ffSBarry Smith . `MATPRODUCT_AtB` - product of the transpose of a given matrix with a matrix
2422ef1f0ffSBarry Smith . `MATPRODUCT_ABt` - product of a matrix with the transpose of another given matrix
2432ef1f0ffSBarry Smith . `MATPRODUCT_PtAP` - the triple product of the transpose of a matrix with another matrix and itself
2442ef1f0ffSBarry Smith . `MATPRODUCT_RARt` - the triple product of a matrix, another matrix and the transpose of the first matrix
2452ef1f0ffSBarry Smith - `MATPRODUCT_ABC` - the product of three matrices
2462ef1f0ffSBarry Smith
24716a05f60SBarry Smith Level: beginner
24816a05f60SBarry Smith
2491cc06b55SBarry Smith .seealso: [](sec_matmatproduct), [](ch_matrices), `MatProductSetType()`
2504222ddf1SHong Zhang E*/
2519371c9d4SSatish Balay typedef enum {
252ce78bad3SBarry Smith MATPRODUCT_UNSPECIFIED,
2539371c9d4SSatish Balay MATPRODUCT_AB,
2549371c9d4SSatish Balay MATPRODUCT_AtB,
2559371c9d4SSatish Balay MATPRODUCT_ABt,
2569371c9d4SSatish Balay MATPRODUCT_PtAP,
2579371c9d4SSatish Balay MATPRODUCT_RARt,
2589371c9d4SSatish Balay MATPRODUCT_ABC
2599371c9d4SSatish Balay } MatProductType;
260544a5e07SHong Zhang PETSC_EXTERN const char *const MatProductTypes[];
2614222ddf1SHong Zhang
2624222ddf1SHong Zhang /*J
2634222ddf1SHong Zhang MatProductAlgorithm - String with the name of an algorithm for a PETSc matrix product implementation
2644222ddf1SHong Zhang
2654222ddf1SHong Zhang Level: beginner
2664222ddf1SHong Zhang
2671cc06b55SBarry Smith .seealso: [](sec_matmatproduct), [](ch_matrices), `MatSetType()`, `Mat`, `MatProductSetAlgorithm()`, `MatProductType`
2684222ddf1SHong Zhang J*/
2694222ddf1SHong Zhang typedef const char *MatProductAlgorithm;
2703e662e0bSHong Zhang #define MATPRODUCTALGORITHMDEFAULT "default"
2713e662e0bSHong Zhang #define MATPRODUCTALGORITHMSORTED "sorted"
2723e662e0bSHong Zhang #define MATPRODUCTALGORITHMSCALABLE "scalable"
2733e662e0bSHong Zhang #define MATPRODUCTALGORITHMSCALABLEFAST "scalable_fast"
2743e662e0bSHong Zhang #define MATPRODUCTALGORITHMHEAP "heap"
2753e662e0bSHong Zhang #define MATPRODUCTALGORITHMBHEAP "btheap"
2763e662e0bSHong Zhang #define MATPRODUCTALGORITHMLLCONDENSED "llcondensed"
2773e662e0bSHong Zhang #define MATPRODUCTALGORITHMROWMERGE "rowmerge"
2783e662e0bSHong Zhang #define MATPRODUCTALGORITHMOUTERPRODUCT "outerproduct"
2793e662e0bSHong Zhang #define MATPRODUCTALGORITHMATB "at*b"
2803e662e0bSHong Zhang #define MATPRODUCTALGORITHMRAP "rap"
2813e662e0bSHong Zhang #define MATPRODUCTALGORITHMNONSCALABLE "nonscalable"
2823e662e0bSHong Zhang #define MATPRODUCTALGORITHMSEQMPI "seqmpi"
2833e662e0bSHong Zhang #define MATPRODUCTALGORITHMBACKEND "backend"
2843e662e0bSHong Zhang #define MATPRODUCTALGORITHMOVERLAPPING "overlapping"
2853e662e0bSHong Zhang #define MATPRODUCTALGORITHMMERGED "merged"
2863e662e0bSHong Zhang #define MATPRODUCTALGORITHMALLATONCE "allatonce"
2873e662e0bSHong Zhang #define MATPRODUCTALGORITHMALLATONCEMERGED "allatonce_merged"
2883e662e0bSHong Zhang #define MATPRODUCTALGORITHMALLGATHERV "allgatherv"
2893e662e0bSHong Zhang #define MATPRODUCTALGORITHMCYCLIC "cyclic"
2903e662e0bSHong Zhang #define MATPRODUCTALGORITHMHYPRE "hypre"
2914222ddf1SHong Zhang
2924222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatProductCreate(Mat, Mat, Mat, Mat *);
2934222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatProductCreateWithMat(Mat, Mat, Mat, Mat);
2944222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatProductSetType(Mat, MatProductType);
2954222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatProductSetAlgorithm(Mat, MatProductAlgorithm);
2968fcac130SJose E. Roman PETSC_EXTERN PetscErrorCode MatProductGetAlgorithm(Mat, MatProductAlgorithm *);
2974222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatProductSetFill(Mat, PetscReal);
2984222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatProductSetFromOptions(Mat);
2994222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatProductSymbolic(Mat);
3004222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatProductNumeric(Mat);
3014222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatProductReplaceMats(Mat, Mat, Mat, Mat);
3024417c5e8SHong Zhang PETSC_EXTERN PetscErrorCode MatProductClear(Mat);
3036718818eSStefano Zampini PETSC_EXTERN PetscErrorCode MatProductView(Mat, PetscViewer);
304c600787bSStefano Zampini PETSC_EXTERN PetscErrorCode MatProductGetType(Mat, MatProductType *);
305c600787bSStefano Zampini PETSC_EXTERN PetscErrorCode MatProductGetMats(Mat, Mat *, Mat *, Mat *);
3064222ddf1SHong Zhang
307c06d978dSMatthew Knepley /* Logging support */
3080700a824SBarry Smith #define MAT_FILE_CLASSID 1211216 /* used to indicate matrices in binary files */
309014dd563SJed Brown PETSC_EXTERN PetscClassId MAT_CLASSID;
310335efc43SPeter Brune PETSC_EXTERN PetscClassId MAT_COLORING_CLASSID;
311014dd563SJed Brown PETSC_EXTERN PetscClassId MAT_FDCOLORING_CLASSID;
312014dd563SJed Brown PETSC_EXTERN PetscClassId MAT_TRANSPOSECOLORING_CLASSID;
313014dd563SJed Brown PETSC_EXTERN PetscClassId MAT_PARTITIONING_CLASSID;
314014dd563SJed Brown PETSC_EXTERN PetscClassId MAT_COARSEN_CLASSID;
315014dd563SJed Brown PETSC_EXTERN PetscClassId MAT_NULLSPACE_CLASSID;
316014dd563SJed Brown PETSC_EXTERN PetscClassId MATMFFD_CLASSID;
317c06d978dSMatthew Knepley
318ceb03754SKris Buschelman /*E
3192ef1f0ffSBarry Smith MatReuse - Indicates if matrices obtained from a previous call to `MatCreateSubMatrices()`, `MatCreateSubMatrix()`, `MatConvert()` or several other functions
320cf37664fSBarry Smith are to be reused to store the new matrix values.
321cf37664fSBarry Smith
3222ef1f0ffSBarry Smith Values:
3232ef1f0ffSBarry Smith + `MAT_INITIAL_MATRIX` - create a new matrix
3242ef1f0ffSBarry Smith . `MAT_REUSE_MATRIX` - reuse the matrix created with a previous call that used `MAT_INITIAL_MATRIX`
3252ef1f0ffSBarry Smith . `MAT_INPLACE_MATRIX` - replace the first input matrix with the new matrix (not applicable to all functions)
326768f1002SStefano Zampini - `MAT_IGNORE_MATRIX` - do not create a new matrix or reuse a given matrix, just ignore that matrix argument (not applicable to all functions)
327ceb03754SKris Buschelman
328ceb03754SKris Buschelman Level: beginner
329ceb03754SKris Buschelman
3301cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatCreateSubMatrices()`, `MatCreateSubMatrix()`, `MatDestroyMatrices()`, `MatConvert()`
331ceb03754SKris Buschelman E*/
3329371c9d4SSatish Balay typedef enum {
3339371c9d4SSatish Balay MAT_INITIAL_MATRIX,
3349371c9d4SSatish Balay MAT_REUSE_MATRIX,
3359371c9d4SSatish Balay MAT_IGNORE_MATRIX,
3369371c9d4SSatish Balay MAT_INPLACE_MATRIX
3379371c9d4SSatish Balay } MatReuse;
338ceb03754SKris Buschelman
3395494a064SHong Zhang /*E
3402ef1f0ffSBarry Smith MatCreateSubMatrixOption - Indicates if matrices obtained from a call to `MatCreateSubMatrices()`
3412ef1f0ffSBarry Smith include the matrix values. Currently it is only used by `MatGetSeqNonzeroStructure()`.
3425494a064SHong Zhang
3432ef1f0ffSBarry Smith Values:
3442ef1f0ffSBarry Smith + `MAT_DO_NOT_GET_VALUES` - do not copy the matrix values
3452ef1f0ffSBarry Smith - `MAT_GET_VALUES` - copy the matrix values
3462ef1f0ffSBarry Smith
34795bd0b28SBarry Smith Level: developer
34895bd0b28SBarry Smith
3492ef1f0ffSBarry Smith Developer Note:
3502ef1f0ffSBarry Smith Why is not just a boolean used for this information?
3512ef1f0ffSBarry Smith
3521cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatDuplicateOption`, `PetscCopyMode`, `MatGetSeqNonzeroStructure()`
3535494a064SHong Zhang E*/
3549371c9d4SSatish Balay typedef enum {
3559371c9d4SSatish Balay MAT_DO_NOT_GET_VALUES,
3569371c9d4SSatish Balay MAT_GET_VALUES
3579371c9d4SSatish Balay } MatCreateSubMatrixOption;
3585494a064SHong Zhang
359607a6623SBarry Smith PETSC_EXTERN PetscErrorCode MatInitializePackage(void);
3604bf303faSJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatFinalizePackage(void);
361c06d978dSMatthew Knepley
362014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreate(MPI_Comm, Mat *);
36377433607SBarry Smith PETSC_EXTERN PetscErrorCode MatCreateFromOptions(MPI_Comm, const char *, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, Mat *);
364014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetSizes(Mat, PetscInt, PetscInt, PetscInt, PetscInt);
36519fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode MatSetType(Mat, MatType);
3660d229a57SStefano Zampini PETSC_EXTERN PetscErrorCode MatGetVecType(Mat, VecType *);
3670d229a57SStefano Zampini PETSC_EXTERN PetscErrorCode MatSetVecType(Mat, VecType);
368014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetFromOptions(Mat);
369fe2efc57SMark PETSC_EXTERN PetscErrorCode MatViewFromOptions(Mat, PetscObject, const char[]);
370bdf89e91SBarry Smith PETSC_EXTERN PetscErrorCode MatRegister(const char[], PetscErrorCode (*)(Mat));
37123bebc0bSBarry Smith PETSC_EXTERN PetscErrorCode MatRegisterRootName(const char[], const char[], const char[]);
372014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetOptionsPrefix(Mat, const char[]);
37326cc229bSBarry Smith PETSC_EXTERN PetscErrorCode MatSetOptionsPrefixFactor(Mat, const char[]);
37426cc229bSBarry Smith PETSC_EXTERN PetscErrorCode MatAppendOptionsPrefixFactor(Mat, const char[]);
375014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatAppendOptionsPrefix(Mat, const char[]);
376014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetOptionsPrefix(Mat, const char *[]);
3775d5d24bbSJeremy L Thompson PETSC_EXTERN PetscErrorCode MatGetState(Mat, PetscObjectState *);
37884d44b13SHong Zhang PETSC_EXTERN PetscErrorCode MatSetErrorIfFailure(Mat, PetscBool);
379f69a0ea3SMatthew Knepley
380140e18c1SBarry Smith PETSC_EXTERN PetscFunctionList MatList;
381140e18c1SBarry Smith PETSC_EXTERN PetscFunctionList MatColoringList;
382140e18c1SBarry Smith PETSC_EXTERN PetscFunctionList MatPartitioningList;
38328988994SBarry Smith
3843b224e63SBarry Smith /*E
385aa6c7ce3SBarry Smith MatStructure - Indicates if two matrices have the same nonzero structure
3863b224e63SBarry Smith
3872ef1f0ffSBarry Smith Values:
3882ef1f0ffSBarry Smith + `SAME_NONZERO_PATTERN` - the two matrices have identical nonzero patterns
3892ef1f0ffSBarry Smith . `DIFFERENT_NONZERO_PATTERN` - the two matrices may have different nonzero patterns
3902ef1f0ffSBarry Smith . `SUBSET_NONZERO_PATTERN` - the nonzero pattern of the second matrix is a subset of the nonzero pattern of the first matrix
3912ef1f0ffSBarry Smith - `UNKNOWN_NONZERO_PATTERN` - there is no known relationship between the nonzero patterns. In this case the implementations
3922ef1f0ffSBarry Smith may try to detect a relationship to optimize the operation
393531d0c6aSBarry Smith
39416a05f60SBarry Smith Level: beginner
39516a05f60SBarry Smith
396af27ebaaSBarry Smith Note:
397af27ebaaSBarry Smith Certain matrix operations (such as `MatAXPY()`) can run much faster if the sparsity pattern of the matrices are the same. But actually determining if
398af27ebaaSBarry Smith the patterns are the same may be costly. This provides a way for users who know something about the sparsity patterns to provide this information
399af27ebaaSBarry Smith to certain PETSc routines.
400af27ebaaSBarry Smith
4011cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatCopy()`, `MatAXPY()`, `MatAYPX()`
4023b224e63SBarry Smith E*/
4039371c9d4SSatish Balay typedef enum {
4049371c9d4SSatish Balay DIFFERENT_NONZERO_PATTERN,
4059371c9d4SSatish Balay SUBSET_NONZERO_PATTERN,
4069371c9d4SSatish Balay SAME_NONZERO_PATTERN,
4079371c9d4SSatish Balay UNKNOWN_NONZERO_PATTERN
4089371c9d4SSatish Balay } MatStructure;
409d60b7d5cSBarry Smith PETSC_EXTERN const char *const MatStructures[];
4103b224e63SBarry Smith
411*beceaeb6SBarry Smith #if defined(PETSC_HAVE_MKL_SPARSE)
412ddee360bSSatish Balay PETSC_EXTERN PetscErrorCode MatCreateSeqAIJMKL(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *);
413ddee360bSSatish Balay PETSC_EXTERN PetscErrorCode MatCreateMPIAIJMKL(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *);
41480095d54SIrina Sokolova PETSC_EXTERN PetscErrorCode MatCreateBAIJMKL(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *);
415ddee360bSSatish Balay PETSC_EXTERN PetscErrorCode MatCreateSeqBAIJMKL(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *);
41680095d54SIrina Sokolova #endif
417cd929ea3SAlp Dener
4184bf303faSJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatCreateMPIAIJPERM(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *);
4194bf303faSJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatCreateSeqAIJPERM(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *);
4204bf303faSJacob Faibussowitsch
421d4002b98SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateSeqSELL(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *);
422d4002b98SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateSELL(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *);
423d4002b98SHong Zhang PETSC_EXTERN PetscErrorCode MatSeqSELLSetPreallocation(Mat, PetscInt, const PetscInt[]);
424d4002b98SHong Zhang PETSC_EXTERN PetscErrorCode MatMPISELLSetPreallocation(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[]);
42507e43b41SHong Zhang PETSC_EXTERN PetscErrorCode MatSeqSELLGetFillRatio(Mat, PetscReal *);
42607e43b41SHong Zhang PETSC_EXTERN PetscErrorCode MatSeqSELLGetMaxSliceWidth(Mat, PetscInt *);
42707e43b41SHong Zhang PETSC_EXTERN PetscErrorCode MatSeqSELLGetAvgSliceWidth(Mat, PetscReal *);
42807e43b41SHong Zhang PETSC_EXTERN PetscErrorCode MatSeqSELLSetSliceHeight(Mat, PetscInt);
429b921024eSHong Zhang PETSC_EXTERN PetscErrorCode MatSeqSELLGetVarSliceSize(Mat, PetscReal *);
43080095d54SIrina Sokolova
4314bf303faSJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatCreateSeqAIJSELL(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *);
4324bf303faSJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatCreateMPIAIJSELL(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *);
433fa078d78SJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatMPISELLGetLocalMatCondensed(Mat, MatReuse, IS *, IS *, Mat *);
434fa078d78SJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatMPISELLGetSeqSELL(Mat, Mat *, Mat *, const PetscInt *[]);
4354bf303faSJacob Faibussowitsch
436014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqDense(MPI_Comm, PetscInt, PetscInt, PetscScalar[], Mat *);
437014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateDense(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscScalar[], Mat *);
438014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqAIJ(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *);
439014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateAIJ(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *);
440014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMPIAIJWithArrays(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[], Mat *);
4418f8f2f0dSBarry Smith PETSC_EXTERN PetscErrorCode MatUpdateMPIAIJWithArrays(Mat, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[]);
4426a3d2595SBarry Smith PETSC_EXTERN PetscErrorCode MatUpdateMPIAIJWithArray(Mat, const PetscScalar[]);
443014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMPIAIJWithSplitArrays(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt[], PetscInt[], PetscScalar[], PetscInt[], PetscInt[], PetscScalar[], Mat *);
444c0c276a7Ssdargavi PETSC_EXTERN PetscErrorCode MatCreateMPIAIJWithSeqAIJ(MPI_Comm, PetscInt, PetscInt, Mat, Mat, PetscInt *, Mat *);
4453b00a383SHong Zhang
446014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqBAIJ(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *);
447014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateBAIJ(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *);
448014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMPIBAIJWithArrays(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[], Mat *);
4497e8381f9SStefano Zampini
450e8729f6fSJunchao Zhang PETSC_EXTERN PetscErrorCode MatSetPreallocationCOO(Mat, PetscCount, PetscInt[], PetscInt[]);
45182a78a4eSJed Brown PETSC_EXTERN PetscErrorCode MatSetPreallocationCOOLocal(Mat, PetscCount, PetscInt[], PetscInt[]);
4527e8381f9SStefano Zampini PETSC_EXTERN PetscErrorCode MatSetValuesCOO(Mat, const PetscScalar[], InsertMode);
453d21a29f3SJed Brown
454014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMPIAdj(MPI_Comm, PetscInt, PetscInt, PetscInt[], PetscInt[], PetscInt[], Mat *);
455014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqSBAIJ(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *);
456d21a29f3SJed Brown
457014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSBAIJ(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *);
458014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMPISBAIJWithArrays(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[], Mat *);
45938f409ebSLisandro Dalcin PETSC_EXTERN PetscErrorCode MatSeqSBAIJSetPreallocationCSR(Mat, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[]);
460014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPISBAIJSetPreallocationCSR(Mat, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[]);
4614cce697cSJed Brown PETSC_EXTERN PetscErrorCode MatXAIJSetPreallocation(Mat, PetscInt, const PetscInt[], const PetscInt[], const PetscInt[], const PetscInt[]);
462dfb205c3SBarry Smith
4632a8381b2SBarry Smith PETSC_EXTERN PetscErrorCode MatCreateShell(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscCtx, Mat *);
464c1fff1c6SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatCreateCentering(MPI_Comm, PetscInt, PetscInt, Mat *);
465014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateNormal(Mat, Mat *);
466c5e4d11fSDmitry Karpeev PETSC_EXTERN PetscErrorCode MatCreateNormalHermitian(Mat, Mat *);
467986c4d72SJose E. Roman PETSC_EXTERN PetscErrorCode MatCreateLRC(Mat, Mat, Vec, Mat, Mat *);
468267ca84cSJose E. Roman PETSC_EXTERN PetscErrorCode MatLRCGetMats(Mat, Mat *, Mat *, Vec *, Mat *);
469bcf2175cSMatthew Knepley PETSC_EXTERN PetscErrorCode MatLRCSetMats(Mat, Mat, Mat, Vec, Mat);
470c5e4d11fSDmitry Karpeev PETSC_EXTERN PetscErrorCode MatCreateIS(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, ISLocalToGlobalMapping, ISLocalToGlobalMapping, Mat *);
471014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqAIJCRL(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *);
472014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMPIAIJCRL(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *);
473c0cdd4a1SDahai Guo
474014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateScatter(MPI_Comm, VecScatter, Mat *);
475014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatScatterSetVecScatter(Mat, VecScatter);
476014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatScatterGetVecScatter(Mat, VecScatter *);
477014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateBlockMat(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt *, Mat *);
478014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCompositeAddMat(Mat, Mat);
479014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCompositeMerge(Mat);
4809371c9d4SSatish Balay typedef enum {
4819371c9d4SSatish Balay MAT_COMPOSITE_MERGE_RIGHT,
4829371c9d4SSatish Balay MAT_COMPOSITE_MERGE_LEFT
4839371c9d4SSatish Balay } MatCompositeMergeType;
4848c8613bfSJakub Kruzik PETSC_EXTERN PetscErrorCode MatCompositeSetMergeType(Mat, MatCompositeMergeType);
485014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateComposite(MPI_Comm, PetscInt, const Mat *, Mat *);
4860da935d5SPierre Jolivet /*E
4870da935d5SPierre Jolivet MatCompositeType - indicates what type of `MATCOMPOSITE` is used
4880da935d5SPierre Jolivet
4890da935d5SPierre Jolivet Values:
4900da935d5SPierre Jolivet + `MAT_COMPOSITE_ADDITIVE` - sum of matrices (default)
4910da935d5SPierre Jolivet - `MAT_COMPOSITE_MULTIPLICATIVE` - product of matrices
4920da935d5SPierre Jolivet
4930da935d5SPierre Jolivet Level: beginner
4940da935d5SPierre Jolivet
4950da935d5SPierre Jolivet .seealso: [](ch_matrices), `MATCOMPOSITE`, `MatCompositeSetType()`, `MatCompositeGetType()`
4960da935d5SPierre Jolivet E*/
4979371c9d4SSatish Balay typedef enum {
4989371c9d4SSatish Balay MAT_COMPOSITE_ADDITIVE,
4999371c9d4SSatish Balay MAT_COMPOSITE_MULTIPLICATIVE
5009371c9d4SSatish Balay } MatCompositeType;
501014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCompositeSetType(Mat, MatCompositeType);
5026dbc55e5SJakub Kruzik PETSC_EXTERN PetscErrorCode MatCompositeGetType(Mat, MatCompositeType *);
5033b35acafSJakub Kruzik PETSC_EXTERN PetscErrorCode MatCompositeSetMatStructure(Mat, MatStructure);
5043b35acafSJakub Kruzik PETSC_EXTERN PetscErrorCode MatCompositeGetMatStructure(Mat, MatStructure *);
5056d0add67SJakub Kruzik PETSC_EXTERN PetscErrorCode MatCompositeGetNumberMat(Mat, PetscInt *);
5068b5c3584SJakub Kruzik PETSC_EXTERN PetscErrorCode MatCompositeGetMat(Mat, PetscInt, Mat *);
50703049c21SJunchao Zhang PETSC_EXTERN PetscErrorCode MatCompositeSetScalings(Mat, const PetscScalar *);
5086d7c1e57SBarry Smith
50919fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode MatCreateFFT(MPI_Comm, PetscInt, const PetscInt[], MatType, Mat *);
510014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqCUFFT(MPI_Comm, PetscInt, const PetscInt[], Mat *);
511dedccee8SHong Zhang
512014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateTranspose(Mat, Mat *);
5138060fb66Sstefano_zampini PETSC_EXTERN PetscErrorCode MatTransposeGetMat(Mat, Mat *);
514d0de2241SAndrew Spott PETSC_EXTERN PetscErrorCode MatCreateHermitianTranspose(Mat, Mat *);
51506511a5cSPierre Jolivet PETSC_EXTERN PetscErrorCode MatHermitianTransposeGetMat(Mat, Mat *);
516fa80d070SPierre Jolivet PETSC_EXTERN PetscErrorCode MatNormalGetMat(Mat, Mat *);
51765f45395SPierre Jolivet PETSC_EXTERN PetscErrorCode MatNormalHermitianGetMat(Mat, Mat *);
51854e05e6cSHong Zhang PETSC_EXTERN PetscErrorCode MatCreateSubMatrixVirtual(Mat, IS, IS, Mat *);
51954e05e6cSHong Zhang PETSC_EXTERN PetscErrorCode MatSubMatrixVirtualUpdate(Mat, Mat, IS, IS);
520014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateLocalRef(Mat, IS, IS, Mat *);
5213423f386SBarry Smith PETSC_EXTERN PetscErrorCode MatCreateConstantDiagonal(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscScalar, Mat *);
522345a4b08SToby Isaac PETSC_EXTERN PetscErrorCode MatCreateDiagonal(Vec, Mat *);
523345a4b08SToby Isaac PETSC_EXTERN PetscErrorCode MatDiagonalGetDiagonal(Mat, Vec *);
524345a4b08SToby Isaac PETSC_EXTERN PetscErrorCode MatDiagonalRestoreDiagonal(Mat, Vec *);
525345a4b08SToby Isaac PETSC_EXTERN PetscErrorCode MatDiagonalGetInverseDiagonal(Mat, Vec *);
526345a4b08SToby Isaac PETSC_EXTERN PetscErrorCode MatDiagonalRestoreInverseDiagonal(Mat, Vec *);
5278a1df862SToby Isaac PETSC_EXTERN PetscErrorCode MatConstantDiagonalGetConstant(Mat, PetscScalar *);
52803db1824SAlex Lindsay PETSC_EXTERN PetscErrorCode MatGetCurrentMemType(Mat, PetscMemType *);
5291472f72bSBarry Smith
530978814f1SStefano Zampini #if defined(PETSC_HAVE_HYPRE)
531d975228cSstefano_zampini PETSC_EXTERN PetscErrorCode MatHYPRESetPreallocation(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[]);
532978814f1SStefano Zampini #endif
533978814f1SStefano Zampini
534014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPythonSetType(Mat, const char[]);
535ebead697SStefano Zampini PETSC_EXTERN PetscErrorCode MatPythonGetType(Mat, const char *[]);
536cc4c1da9SBarry Smith PETSC_EXTERN PetscErrorCode MatPythonCreate(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, const char[], Mat *);
5371d6018f0SLisandro Dalcin
538846b4da1SFande Kong PETSC_EXTERN PetscErrorCode MatResetPreallocation(Mat);
539674b392bSAlexander PETSC_EXTERN PetscErrorCode MatResetHash(Mat);
540014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetUp(Mat);
541014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatDestroy(Mat *);
542e56f5c9eSBarry Smith PETSC_EXTERN PetscErrorCode MatGetNonzeroState(Mat, PetscObjectState *);
54321c89e3eSBarry Smith
544014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatConjugate(Mat);
545014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatRealPart(Mat);
546014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatImaginaryPart(Mat);
547014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetDiagonalBlock(Mat, Mat *);
548014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetTrace(Mat, PetscScalar *);
549713ccfa9SJed Brown PETSC_EXTERN PetscErrorCode MatInvertBlockDiagonal(Mat, const PetscScalar **);
5500da83c2eSBarry Smith PETSC_EXTERN PetscErrorCode MatInvertVariableBlockDiagonal(Mat, PetscInt, const PetscInt *, PetscScalar *);
551479a70c0SJed Brown PETSC_EXTERN PetscErrorCode MatInvertBlockDiagonalMat(Mat, Mat);
5528a9c020eSBarry Smith PETSC_EXTERN PetscErrorCode MatInvertVariableBlockEnvelope(Mat, MatReuse, Mat *);
55320c04d79SPierre Jolivet PETSC_EXTERN PetscErrorCode MatComputeVariableBlockEnvelope(Mat);
55499cafbc1SBarry Smith
555014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetValues(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[], const PetscScalar[], InsertMode);
5568a9c020eSBarry Smith PETSC_EXTERN PetscErrorCode MatSetValuesIS(Mat, IS, IS, const PetscScalar[], InsertMode);
557014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetValuesBlocked(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[], const PetscScalar[], InsertMode);
558014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetValuesRow(Mat, PetscInt, const PetscScalar[]);
559014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetValuesRowLocal(Mat, PetscInt, const PetscScalar[]);
560014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetValuesBatch(Mat, PetscInt, PetscInt, PetscInt[], const PetscScalar[]);
56173a71a0fSBarry Smith PETSC_EXTERN PetscErrorCode MatSetRandom(Mat, PetscRandom);
56284cb2905SBarry Smith
5632ef4de8bSBarry Smith /*S
5642ef1f0ffSBarry Smith MatStencil - Data structure (C struct) for storing information about rows and
5652ef1f0ffSBarry Smith columns of a matrix as indexed on an associated grid. These are arguments to `MatSetStencil()` and `MatSetBlockStencil()`
56662ef0227SBarry Smith
5672ef1f0ffSBarry Smith Level: beginner
5682ef1f0ffSBarry Smith
5692ef1f0ffSBarry Smith Notes:
57062ef0227SBarry Smith The i,j, and k represent the logical coordinates over the entire grid (for 2 and 1 dimensional problems the k and j entries are ignored).
57115229ffcSPierre Jolivet The c represents the degrees of freedom at each grid point (the dof argument to `DMDASetDOF()`). If dof is 1 then this entry is ignored.
57262ef0227SBarry Smith
573ce78bad3SBarry Smith For stencil access to vectors see `DMDAVecGetArray()`
574be479b30SJed Brown
5752ef1f0ffSBarry Smith For staggered grids, see `DMStagStencil`
5762ef4de8bSBarry Smith
577ce78bad3SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatSetValuesStencil()`, `MatSetStencil()`, `MatSetValuesBlockedStencil()`, `DMDAVecGetArray()`
5782ef1f0ffSBarry Smith `DMStagStencil`
5792ef4de8bSBarry Smith S*/
580435da068SBarry Smith typedef struct {
581c1ac3661SBarry Smith PetscInt k, j, i, c;
582435da068SBarry Smith } MatStencil;
5832ef4de8bSBarry Smith
584014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetValuesStencil(Mat, PetscInt, const MatStencil[], PetscInt, const MatStencil[], const PetscScalar[], InsertMode);
585014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetValuesBlockedStencil(Mat, PetscInt, const MatStencil[], PetscInt, const MatStencil[], const PetscScalar[], InsertMode);
586014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetStencil(Mat, PetscInt, const PetscInt[], const PetscInt[], PetscInt);
587435da068SBarry Smith
588d91e6319SBarry Smith /*E
5892ef1f0ffSBarry Smith MatAssemblyType - Indicates if the process of setting values into the matrix is complete, and the matrix is ready for use
590d91e6319SBarry Smith
5912ef1f0ffSBarry Smith Values:
5922ef1f0ffSBarry Smith + `MAT_FLUSH_ASSEMBLY` - you will continue to put values into the matrix
5932ef1f0ffSBarry Smith - `MAT_FINAL_ASSEMBLY` - you wish to use the matrix with the values currently inserted
5942ef1f0ffSBarry Smith
59516a05f60SBarry Smith Level: beginner
59616a05f60SBarry Smith
5971cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatSetValues`, `MatAssemblyBegin()`, `MatAssemblyEnd()`
598d91e6319SBarry Smith E*/
5999371c9d4SSatish Balay typedef enum {
6009371c9d4SSatish Balay MAT_FLUSH_ASSEMBLY = 1,
6019371c9d4SSatish Balay MAT_FINAL_ASSEMBLY = 0
6029371c9d4SSatish Balay } MatAssemblyType;
6034f58015eSStefano Zampini
604014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatAssemblyBegin(Mat, MatAssemblyType);
605014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatAssemblyEnd(Mat, MatAssemblyType);
606014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatAssembled(Mat, PetscBool *);
6074f9c727eSBarry Smith
608d91e6319SBarry Smith /*E
6092ef1f0ffSBarry Smith MatOption - Options that may be set for a matrix that indicate properties of the matrix or affect its behavior or storage
610d91e6319SBarry Smith
611d91e6319SBarry Smith Level: beginner
612d91e6319SBarry Smith
6132ef1f0ffSBarry Smith Note:
6142ef1f0ffSBarry Smith See `MatSetOption()` for the use of the options
6152ef1f0ffSBarry Smith
6162ef1f0ffSBarry Smith Developer Note:
61795452b02SPatrick Sanan Entries that are negative need not be called collectively by all processes.
618382164b0SBarry Smith
6191cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatSetOption()`
620d91e6319SBarry Smith E*/
6219371c9d4SSatish Balay typedef enum {
6229371c9d4SSatish Balay MAT_OPTION_MIN = -3,
623c5e4d11fSDmitry Karpeev MAT_UNUSED_NONZERO_LOCATION_ERR = -2,
62492d4d306SBarry Smith MAT_ROW_ORIENTED = -1,
625382164b0SBarry Smith MAT_SYMMETRIC = 1,
626382164b0SBarry Smith MAT_STRUCTURALLY_SYMMETRIC = 2,
6278c78258cSHong Zhang MAT_FORCE_DIAGONAL_ENTRIES = 3,
628382164b0SBarry Smith MAT_IGNORE_OFF_PROC_ENTRIES = 4,
629382164b0SBarry Smith MAT_USE_HASH_TABLE = 5,
630382164b0SBarry Smith MAT_KEEP_NONZERO_PATTERN = 6,
631382164b0SBarry Smith MAT_IGNORE_ZERO_ENTRIES = 7,
632382164b0SBarry Smith MAT_USE_INODES = 8,
633382164b0SBarry Smith MAT_HERMITIAN = 9,
634382164b0SBarry Smith MAT_SYMMETRY_ETERNAL = 10,
635c5e4d11fSDmitry Karpeev MAT_NEW_NONZERO_LOCATION_ERR = 11,
636382164b0SBarry Smith MAT_IGNORE_LOWER_TRIANGULAR = 12,
637382164b0SBarry Smith MAT_ERROR_LOWER_TRIANGULAR = 13,
638382164b0SBarry Smith MAT_GETROW_UPPERTRIANGULAR = 14,
639382164b0SBarry Smith MAT_SPD = 15,
64092d4d306SBarry Smith MAT_NO_OFF_PROC_ZERO_ROWS = 16,
64192d4d306SBarry Smith MAT_NO_OFF_PROC_ENTRIES = 17,
64292d4d306SBarry Smith MAT_NEW_NONZERO_LOCATIONS = 18,
643c5e4d11fSDmitry Karpeev MAT_NEW_NONZERO_ALLOCATION_ERR = 19,
644c5e4d11fSDmitry Karpeev MAT_SUBSET_OFF_PROC_ENTRIES = 20,
645c10200c1SHong Zhang MAT_SUBMAT_SINGLEIS = 21,
646957cac9fSHong Zhang MAT_STRUCTURE_ONLY = 22,
647071fcb05SBarry Smith MAT_SORTED_FULL = 23,
6481a2c6b5cSJunchao Zhang MAT_FORM_EXPLICIT_TRANSPOSE = 24,
649b94d7dedSBarry Smith MAT_STRUCTURAL_SYMMETRY_ETERNAL = 25,
650b94d7dedSBarry Smith MAT_SPD_ETERNAL = 26,
6519371c9d4SSatish Balay MAT_OPTION_MAX = 27
6529371c9d4SSatish Balay } MatOption;
653e057df02SPaul Mullowney
6540f8fb01aSBarry Smith PETSC_EXTERN const char *const *MatOptions;
655014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetOption(Mat, MatOption, PetscBool);
6567d68702bSBarry Smith PETSC_EXTERN PetscErrorCode MatGetOption(Mat, MatOption, PetscBool *);
657856afa8bSStefano Zampini PETSC_EXTERN PetscErrorCode MatPropagateSymmetryOptions(Mat, Mat);
65819fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode MatGetType(Mat, MatType *);
65984cb2905SBarry Smith
660014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetValues(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[], PetscScalar[]);
661014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetRow(Mat, PetscInt, PetscInt *, const PetscInt *[], const PetscScalar *[]);
662014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatRestoreRow(Mat, PetscInt, PetscInt *, const PetscInt *[], const PetscScalar *[]);
663014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetRowUpperTriangular(Mat);
664014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatRestoreRowUpperTriangular(Mat);
665014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetColumnVector(Mat, Vec, PetscInt);
6668c778c55SBarry Smith PETSC_EXTERN PetscErrorCode MatSeqAIJGetArray(Mat, PetscScalar *[]);
6678f1ea47aSStefano Zampini PETSC_EXTERN PetscErrorCode MatSeqAIJGetArrayRead(Mat, const PetscScalar *[]);
668d67d9f35SJunchao Zhang PETSC_EXTERN PetscErrorCode MatSeqAIJGetArrayWrite(Mat, PetscScalar *[]);
6698c778c55SBarry Smith PETSC_EXTERN PetscErrorCode MatSeqAIJRestoreArray(Mat, PetscScalar *[]);
6708f1ea47aSStefano Zampini PETSC_EXTERN PetscErrorCode MatSeqAIJRestoreArrayRead(Mat, const PetscScalar *[]);
671d67d9f35SJunchao Zhang PETSC_EXTERN PetscErrorCode MatSeqAIJRestoreArrayWrite(Mat, PetscScalar *[]);
67221e72a00SBarry Smith PETSC_EXTERN PetscErrorCode MatSeqAIJGetMaxRowNonzeros(Mat, PetscInt *);
673bd04181cSBarry Smith PETSC_EXTERN PetscErrorCode MatSeqAIJSetValuesLocalFast(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[], const PetscScalar[], InsertMode);
6744099cc6bSBarry Smith PETSC_EXTERN PetscErrorCode MatSeqAIJSetType(Mat, MatType);
675ad7e164aSPierre Jolivet PETSC_EXTERN PetscErrorCode MatSeqAIJKron(Mat, Mat, MatReuse, Mat *);
676388d47a6SSatish Balay PETSC_EXTERN PetscErrorCode MatSeqAIJRegister(const char[], PetscErrorCode (*)(Mat, MatType, MatReuse, Mat *));
6774099cc6bSBarry Smith PETSC_EXTERN PetscFunctionList MatSeqAIJList;
678cda14afcSprj- PETSC_EXTERN PetscErrorCode MatSeqBAIJGetArray(Mat, PetscScalar *[]);
679cda14afcSprj- PETSC_EXTERN PetscErrorCode MatSeqBAIJRestoreArray(Mat, PetscScalar *[]);
6808397e458SBarry Smith PETSC_EXTERN PetscErrorCode MatSeqSBAIJGetArray(Mat, PetscScalar *[]);
6818397e458SBarry Smith PETSC_EXTERN PetscErrorCode MatSeqSBAIJRestoreArray(Mat, PetscScalar *[]);
6828c778c55SBarry Smith PETSC_EXTERN PetscErrorCode MatDenseGetArray(Mat, PetscScalar *[]);
6838c778c55SBarry Smith PETSC_EXTERN PetscErrorCode MatDenseRestoreArray(Mat, PetscScalar *[]);
684d3042a70SBarry Smith PETSC_EXTERN PetscErrorCode MatDensePlaceArray(Mat, const PetscScalar[]);
685d5ea218eSStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseReplaceArray(Mat, const PetscScalar[]);
686d3042a70SBarry Smith PETSC_EXTERN PetscErrorCode MatDenseResetArray(Mat);
6878572280aSBarry Smith PETSC_EXTERN PetscErrorCode MatDenseGetArrayRead(Mat, const PetscScalar *[]);
6888572280aSBarry Smith PETSC_EXTERN PetscErrorCode MatDenseRestoreArrayRead(Mat, const PetscScalar *[]);
6896947451fSStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseGetArrayWrite(Mat, PetscScalar *[]);
6906947451fSStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseRestoreArrayWrite(Mat, PetscScalar *[]);
691cd3f9d89SJunchao Zhang PETSC_EXTERN PetscErrorCode MatDenseGetArrayAndMemType(Mat, PetscScalar *[], PetscMemType *);
692cd3f9d89SJunchao Zhang PETSC_EXTERN PetscErrorCode MatDenseRestoreArrayAndMemType(Mat, PetscScalar *[]);
693cd3f9d89SJunchao Zhang PETSC_EXTERN PetscErrorCode MatDenseGetArrayReadAndMemType(Mat, const PetscScalar *[], PetscMemType *);
694cd3f9d89SJunchao Zhang PETSC_EXTERN PetscErrorCode MatDenseRestoreArrayReadAndMemType(Mat, const PetscScalar *[]);
695cd3f9d89SJunchao Zhang PETSC_EXTERN PetscErrorCode MatDenseGetArrayWriteAndMemType(Mat, PetscScalar *[], PetscMemType *);
696cd3f9d89SJunchao Zhang PETSC_EXTERN PetscErrorCode MatDenseRestoreArrayWriteAndMemType(Mat, PetscScalar *[]);
697014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetBlockSize(Mat, PetscInt *);
698014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetBlockSize(Mat, PetscInt);
699014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetBlockSizes(Mat, PetscInt *, PetscInt *);
700014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetBlockSizes(Mat, PetscInt, PetscInt);
70133d57670SJed Brown PETSC_EXTERN PetscErrorCode MatSetBlockSizesFromMats(Mat, Mat, Mat);
7026e25ca73SStefano Zampini PETSC_EXTERN PetscErrorCode MatSetVariableBlockSizes(Mat, PetscInt, const PetscInt[]);
7036e25ca73SStefano Zampini PETSC_EXTERN PetscErrorCode MatGetVariableBlockSizes(Mat, PetscInt *, const PetscInt *[]);
704d7ff4d9fSStefano Zampini PETSC_EXTERN PetscErrorCode MatSelectVariableBlockSizes(Mat, Mat, IS);
7050da83c2eSBarry Smith
70686aefd0dSHong Zhang PETSC_EXTERN PetscErrorCode MatDenseGetColumn(Mat, PetscInt, PetscScalar *[]);
70786aefd0dSHong Zhang PETSC_EXTERN PetscErrorCode MatDenseRestoreColumn(Mat, PetscScalar *[]);
7086947451fSStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseGetColumnVec(Mat, PetscInt, Vec *);
7096947451fSStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseRestoreColumnVec(Mat, PetscInt, Vec *);
7106947451fSStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseGetColumnVecRead(Mat, PetscInt, Vec *);
7116947451fSStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseRestoreColumnVecRead(Mat, PetscInt, Vec *);
7126947451fSStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseGetColumnVecWrite(Mat, PetscInt, Vec *);
7136947451fSStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseRestoreColumnVecWrite(Mat, PetscInt, Vec *);
714a2748737SPierre Jolivet PETSC_EXTERN PetscErrorCode MatDenseGetSubMatrix(Mat, PetscInt, PetscInt, PetscInt, PetscInt, Mat *);
7155ea7661aSPierre Jolivet PETSC_EXTERN PetscErrorCode MatDenseRestoreSubMatrix(Mat, Mat *);
7161620fd73SBarry Smith
717014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMult(Mat, Vec, Vec);
718014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultDiagonalBlock(Mat, Vec, Vec);
719014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultAdd(Mat, Vec, Vec, Vec);
720014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultTranspose(Mat, Vec, Vec);
721014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultHermitianTranspose(Mat, Vec, Vec);
722014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatIsTranspose(Mat, Mat, PetscReal, PetscBool *);
723014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatIsHermitianTranspose(Mat, Mat, PetscReal, PetscBool *);
724014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultTransposeAdd(Mat, Vec, Vec, Vec);
725014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultHermitianTransposeAdd(Mat, Vec, Vec, Vec);
726014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMatSolve(Mat, Mat, Mat);
727bdc285e1SStefano Zampini PETSC_EXTERN PetscErrorCode MatMatSolveTranspose(Mat, Mat, Mat);
728eb3ef3b2SHong Zhang PETSC_EXTERN PetscErrorCode MatMatTransposeSolve(Mat, Mat, Mat);
729f9426fe0SMark Adams PETSC_EXTERN PetscErrorCode MatResidual(Mat, Vec, Vec, Vec);
730f5edf698SHong Zhang
731d91e6319SBarry Smith /*E
732d91e6319SBarry Smith MatDuplicateOption - Indicates if a duplicated sparse matrix should have
733d91e6319SBarry Smith its numerical values copied over or just its nonzero structure.
734d91e6319SBarry Smith
7352ef1f0ffSBarry Smith Values:
7362ef1f0ffSBarry Smith + `MAT_DO_NOT_COPY_VALUES` - Create a matrix using the same nonzero pattern as the original matrix,
7372ef1f0ffSBarry Smith with zeros for the numerical values
7382ef1f0ffSBarry Smith . `MAT_COPY_VALUES` - Create a matrix with the same nonzero pattern as the original matrix
7392ef1f0ffSBarry Smith and with the same numerical values.
7402ef1f0ffSBarry Smith - `MAT_SHARE_NONZERO_PATTERN` - Create a matrix that shares the nonzero structure with the previous matrix
7412ef1f0ffSBarry Smith and does not copy it, using zeros for the numerical values. The parent and
7422ef1f0ffSBarry Smith child matrices will share their index (i and j) arrays, and you cannot
7432ef1f0ffSBarry Smith insert new nonzero entries into either matrix
7440018da39SRichard Tran Mills
74516a05f60SBarry Smith Level: beginner
74616a05f60SBarry Smith
74787497f52SBarry Smith Note:
74887497f52SBarry Smith Many matrix types (including `MATSEQAIJ`) do not support the `MAT_SHARE_NONZERO_PATTERN` optimization; in
74987497f52SBarry Smith this case the behavior is as if `MAT_DO_NOT_COPY_VALUES` has been specified.
75070dcbbb9SBarry Smith
7511cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatDuplicate()`
752d91e6319SBarry Smith E*/
7539371c9d4SSatish Balay typedef enum {
7549371c9d4SSatish Balay MAT_DO_NOT_COPY_VALUES,
7559371c9d4SSatish Balay MAT_COPY_VALUES,
7569371c9d4SSatish Balay MAT_SHARE_NONZERO_PATTERN
7579371c9d4SSatish Balay } MatDuplicateOption;
7582e8a6d31SBarry Smith
75919fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode MatConvert(Mat, MatType, MatReuse, Mat *);
760014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatDuplicate(Mat, MatDuplicateOption, Mat *);
76194a9d846SBarry Smith
762014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCopy(Mat, Mat, MatStructure);
763014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatView(Mat, PetscViewer);
764014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatIsSymmetric(Mat, PetscReal, PetscBool *);
765014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatIsStructurallySymmetric(Mat, PetscBool *);
766014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatIsHermitian(Mat, PetscReal, PetscBool *);
767014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatIsSymmetricKnown(Mat, PetscBool *, PetscBool *);
768014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatIsHermitianKnown(Mat, PetscBool *, PetscBool *);
769b94d7dedSBarry Smith PETSC_EXTERN PetscErrorCode MatIsStructurallySymmetricKnown(Mat, PetscBool *, PetscBool *);
770b94d7dedSBarry Smith PETSC_EXTERN PetscErrorCode MatIsSPDKnown(Mat, PetscBool *, PetscBool *);
771014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatLoad(Mat, PetscViewer);
7727b80b807SBarry Smith
7731a83f524SJed Brown PETSC_EXTERN PetscErrorCode MatGetRowIJ(Mat, PetscInt, PetscBool, PetscBool, PetscInt *, const PetscInt *[], const PetscInt *[], PetscBool *);
7741a83f524SJed Brown PETSC_EXTERN PetscErrorCode MatRestoreRowIJ(Mat, PetscInt, PetscBool, PetscBool, PetscInt *, const PetscInt *[], const PetscInt *[], PetscBool *);
7751a83f524SJed Brown PETSC_EXTERN PetscErrorCode MatGetColumnIJ(Mat, PetscInt, PetscBool, PetscBool, PetscInt *, const PetscInt *[], const PetscInt *[], PetscBool *);
7761a83f524SJed Brown PETSC_EXTERN PetscErrorCode MatRestoreColumnIJ(Mat, PetscInt, PetscBool, PetscBool, PetscInt *, const PetscInt *[], const PetscInt *[], PetscBool *);
777d4fbbf0eSBarry Smith
778d91e6319SBarry Smith /*S
77987497f52SBarry Smith MatInfo - Context of matrix information, used with `MatGetInfo()`
780d91e6319SBarry Smith
781d91e6319SBarry Smith Level: intermediate
782d91e6319SBarry Smith
7832ef1f0ffSBarry Smith Fortran Note:
784687234bfSJose E. Roman `MatInfo` is a derived type, use e.g. `matinfo%nz_allocated` to access its components.
7852ef1f0ffSBarry Smith
7861cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatGetInfo()`, `MatInfoType`
787d91e6319SBarry Smith S*/
7884e220ebcSLois Curfman McInnes typedef struct {
789b0a32e0cSBarry Smith PetscLogDouble block_size; /* block size */
790b0a32e0cSBarry Smith PetscLogDouble nz_allocated, nz_used, nz_unneeded; /* number of nonzeros */
791b0a32e0cSBarry Smith PetscLogDouble memory; /* memory allocated */
792b0a32e0cSBarry Smith PetscLogDouble assemblies; /* number of matrix assemblies called */
793b0a32e0cSBarry Smith PetscLogDouble mallocs; /* number of mallocs during MatSetValues() */
794b0a32e0cSBarry Smith PetscLogDouble fill_ratio_given, fill_ratio_needed; /* fill ratio for LU/ILU */
795b0a32e0cSBarry Smith PetscLogDouble factor_mallocs; /* number of mallocs during factorization */
7964e220ebcSLois Curfman McInnes } MatInfo;
7974e220ebcSLois Curfman McInnes
798d9274352SBarry Smith /*E
799d9274352SBarry Smith MatInfoType - Indicates if you want information about the local part of the matrix,
800d9274352SBarry Smith the entire parallel matrix or the maximum over all the local parts.
801d9274352SBarry Smith
8022ef1f0ffSBarry Smith Values:
8032ef1f0ffSBarry Smith + `MAT_LOCAL` - values for each MPI process part of the matrix
8042ef1f0ffSBarry Smith . `MAT_GLOBAL_MAX` - maximum of each value over all MPI processes
8052ef1f0ffSBarry Smith - `MAT_GLOBAL_SUM` - sum of each value over all MPI processes
806d9274352SBarry Smith
80716a05f60SBarry Smith Level: beginner
80816a05f60SBarry Smith
8091cc06b55SBarry Smith .seealso: [](ch_matrices), `MatGetInfo()`, `MatInfo`
810d9274352SBarry Smith E*/
8119371c9d4SSatish Balay typedef enum {
8129371c9d4SSatish Balay MAT_LOCAL = 1,
8139371c9d4SSatish Balay MAT_GLOBAL_MAX = 2,
8149371c9d4SSatish Balay MAT_GLOBAL_SUM = 3
8159371c9d4SSatish Balay } MatInfoType;
816014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetInfo(Mat, MatInfoType, MatInfo *);
817014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetDiagonal(Mat, Vec);
818014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetRowMax(Mat, Vec, PetscInt[]);
819014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetRowMin(Mat, Vec, PetscInt[]);
820014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetRowMaxAbs(Mat, Vec, PetscInt[]);
821eede4a3fSMark Adams PETSC_EXTERN PetscErrorCode MatGetRowSumAbs(Mat, Vec);
822014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetRowMinAbs(Mat, Vec, PetscInt[]);
823014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetRowSum(Mat, Vec);
824014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatTranspose(Mat, MatReuse, Mat *);
8257fb60732SBarry Smith PETSC_EXTERN PetscErrorCode MatTransposeSymbolic(Mat, Mat *);
8267fb60732SBarry Smith PETSC_EXTERN PetscErrorCode MatTransposeSetPrecursor(Mat, Mat);
827014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatHermitianTranspose(Mat, MatReuse, Mat *);
828014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPermute(Mat, IS, IS, Mat *);
829014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatDiagonalScale(Mat, Vec, Vec);
830014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatDiagonalSet(Mat, Vec, InsertMode);
831a52676ecSHong Zhang
832014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatEqual(Mat, Mat, PetscBool *);
833014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultEqual(Mat, Mat, PetscInt, PetscBool *);
834014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultAddEqual(Mat, Mat, PetscInt, PetscBool *);
835014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultTransposeEqual(Mat, Mat, PetscInt, PetscBool *);
836014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultTransposeAddEqual(Mat, Mat, PetscInt, PetscBool *);
837e573050aSPierre Jolivet PETSC_EXTERN PetscErrorCode MatMultHermitianTransposeEqual(Mat, Mat, PetscInt, PetscBool *);
838e573050aSPierre Jolivet PETSC_EXTERN PetscErrorCode MatMultHermitianTransposeAddEqual(Mat, Mat, PetscInt, PetscBool *);
839a52676ecSHong Zhang PETSC_EXTERN PetscErrorCode MatMatMultEqual(Mat, Mat, Mat, PetscInt, PetscBool *);
840a52676ecSHong Zhang PETSC_EXTERN PetscErrorCode MatTransposeMatMultEqual(Mat, Mat, Mat, PetscInt, PetscBool *);
841cc48ffa7SToby Isaac PETSC_EXTERN PetscErrorCode MatMatTransposeMultEqual(Mat, Mat, Mat, PetscInt, PetscBool *);
8424222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatPtAPMultEqual(Mat, Mat, Mat, PetscInt, PetscBool *);
843447fed29SStefano Zampini PETSC_EXTERN PetscErrorCode MatRARtMultEqual(Mat, Mat, Mat, PetscInt, PetscBool *);
84486919fd6SHong Zhang PETSC_EXTERN PetscErrorCode MatIsLinear(Mat, PetscInt, PetscBool *);
8457b80b807SBarry Smith
846014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNorm(Mat, NormType, PetscReal *);
847014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetColumnNorms(Mat, NormType, PetscReal *);
848857cbf51SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatGetColumnSums(Mat, PetscScalar *);
849857cbf51SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatGetColumnSumsRealPart(Mat, PetscReal *);
850857cbf51SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatGetColumnSumsImaginaryPart(Mat, PetscReal *);
851857cbf51SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatGetColumnMeans(Mat, PetscScalar *);
852857cbf51SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatGetColumnMeansRealPart(Mat, PetscReal *);
853857cbf51SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatGetColumnMeansImaginaryPart(Mat, PetscReal *);
854857cbf51SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatGetColumnReductions(Mat, PetscInt, PetscReal *);
855014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroEntries(Mat);
8561b2b9847SBarry Smith PETSC_EXTERN PetscErrorCode MatSetInf(Mat);
857014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRows(Mat, PetscInt, const PetscInt[], PetscScalar, Vec, Vec);
858014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRowsIS(Mat, IS, PetscScalar, Vec, Vec);
859014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRowsStencil(Mat, PetscInt, const MatStencil[], PetscScalar, Vec, Vec);
860014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRowsColumnsStencil(Mat, PetscInt, const MatStencil[], PetscScalar, Vec, Vec);
861014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRowsColumns(Mat, PetscInt, const PetscInt[], PetscScalar, Vec, Vec);
862014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRowsColumnsIS(Mat, IS, PetscScalar, Vec, Vec);
8637b80b807SBarry Smith
864014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetSize(Mat, PetscInt *, PetscInt *);
865014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetLocalSize(Mat, PetscInt *, PetscInt *);
866014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetOwnershipRange(Mat, PetscInt *, PetscInt *);
867014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetOwnershipRanges(Mat, const PetscInt **);
868014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetOwnershipRangeColumn(Mat, PetscInt *, PetscInt *);
869014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetOwnershipRangesColumn(Mat, const PetscInt **);
870566876eaSJed Brown PETSC_EXTERN PetscErrorCode MatGetOwnershipIS(Mat, IS *, IS *);
8715ef9f2a5SBarry Smith
8727dae84e0SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateSubMatrices(Mat, PetscInt, const IS[], const IS[], MatReuse, Mat *[]);
MatGetSubMatrices(Mat mat,PetscInt n,const IS irow[],const IS icol[],MatReuse scall,Mat * submat[])873edd03b47SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION(3, 8, 0, "MatCreateSubMatrices()", ) static inline PetscErrorCode MatGetSubMatrices(Mat mat, PetscInt n, const IS irow[], const IS icol[], MatReuse scall, Mat *submat[])
874d71ae5a4SJacob Faibussowitsch {
8759371c9d4SSatish Balay return MatCreateSubMatrices(mat, n, irow, icol, scall, submat);
8769371c9d4SSatish Balay }
8777dae84e0SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateSubMatricesMPI(Mat, PetscInt, const IS[], const IS[], MatReuse, Mat *[]);
MatGetSubMatricesMPI(Mat mat,PetscInt n,const IS irow[],const IS icol[],MatReuse scall,Mat * submat[])878edd03b47SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION(3, 8, 0, "MatCreateSubMatricesMPI()", ) static inline PetscErrorCode MatGetSubMatricesMPI(Mat mat, PetscInt n, const IS irow[], const IS icol[], MatReuse scall, Mat *submat[])
879d71ae5a4SJacob Faibussowitsch {
8809371c9d4SSatish Balay return MatCreateSubMatricesMPI(mat, n, irow, icol, scall, submat);
8819371c9d4SSatish Balay }
882014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatDestroyMatrices(PetscInt, Mat *[]);
883df750dc8SHong Zhang PETSC_EXTERN PetscErrorCode MatDestroySubMatrices(PetscInt, Mat *[]);
8847dae84e0SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateSubMatrix(Mat, IS, IS, MatReuse, Mat *);
MatGetSubMatrix(Mat mat,IS isrow,IS iscol,MatReuse cll,Mat * newmat)885edd03b47SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION(3, 8, 0, "MatCreateSubMatrix()", ) static inline PetscErrorCode MatGetSubMatrix(Mat mat, IS isrow, IS iscol, MatReuse cll, Mat *newmat)
886d71ae5a4SJacob Faibussowitsch {
8879371c9d4SSatish Balay return MatCreateSubMatrix(mat, isrow, iscol, cll, newmat);
8889371c9d4SSatish Balay }
889014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetLocalSubMatrix(Mat, IS, IS, Mat *);
890014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatRestoreLocalSubMatrix(Mat, IS, IS, Mat *);
891014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetSeqNonzeroStructure(Mat, Mat *);
892014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatDestroySeqNonzeroStructure(Mat *);
8937b80b807SBarry Smith
894014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMPIAIJSumSeqAIJ(MPI_Comm, Mat, PetscInt, PetscInt, MatReuse, Mat *);
895014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMPIAIJSumSeqAIJSymbolic(MPI_Comm, Mat, PetscInt, PetscInt, Mat *);
896014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMPIAIJSumSeqAIJNumeric(Mat, Mat);
897014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIAIJGetLocalMat(Mat, MatReuse, Mat *);
8988a9c020eSBarry Smith PETSC_EXTERN PetscErrorCode MatAIJGetLocalMat(Mat, Mat *);
899014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIAIJGetLocalMatCondensed(Mat, MatReuse, IS *, IS *, Mat *);
900ed502f03SStefano Zampini PETSC_EXTERN PetscErrorCode MatMPIAIJGetLocalMatMerge(Mat, MatReuse, IS *, Mat *);
901f2afee66SBarry Smith PETSC_EXTERN PetscErrorCode MatMPIAIJGetNumberNonzeros(Mat, PetscCount *);
902014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetBrowsOfAcols(Mat, Mat, MatReuse, IS *, IS *, Mat *);
903014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetGhosts(Mat, PetscInt *, const PetscInt *[]);
9048efafbd8SBarry Smith
905014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatIncreaseOverlap(Mat, PetscInt, IS[], PetscInt);
906ce78bad3SBarry Smith PETSC_EXTERN PetscErrorCode MatIncreaseOverlapSplit(Mat, PetscInt, IS[], PetscInt);
907d2b2a242SBarry Smith PETSC_EXTERN PetscErrorCode MatMPIAIJSetUseScalableIncreaseOverlap(Mat, PetscBool);
9087b80b807SBarry Smith
909014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMatMult(Mat, Mat, MatReuse, PetscReal, Mat *);
91022440eb1SKris Buschelman
9117bab7c10SHong Zhang PETSC_EXTERN PetscErrorCode MatMatMatMult(Mat, Mat, Mat, MatReuse, PetscReal, Mat *);
9122df6c5c3SPatrick Farrell PETSC_EXTERN PetscErrorCode MatGalerkin(Mat, Mat, Mat, MatReuse, PetscReal, Mat *);
9137bab7c10SHong Zhang
914014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPtAP(Mat, Mat, MatReuse, PetscReal, Mat *);
915014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatRARt(Mat, Mat, MatReuse, PetscReal, Mat *);
91622440eb1SKris Buschelman
917014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatTransposeMatMult(Mat, Mat, MatReuse, PetscReal, Mat *);
918014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMatTransposeMult(Mat, Mat, MatReuse, PetscReal, Mat *);
919bc011b1eSHong Zhang
920014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatAXPY(Mat, PetscScalar, Mat, MatStructure);
921014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatAYPX(Mat, PetscScalar, Mat, MatStructure);
9221c741599SHong Zhang
923014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatScale(Mat, PetscScalar);
924014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatShift(Mat, PetscScalar);
9257b80b807SBarry Smith
926014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetLocalToGlobalMapping(Mat, ISLocalToGlobalMapping, ISLocalToGlobalMapping);
927014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetLocalToGlobalMapping(Mat, ISLocalToGlobalMapping *, ISLocalToGlobalMapping *);
928a93ff8c4SPeter Brune PETSC_EXTERN PetscErrorCode MatGetLayouts(Mat, PetscLayout *, PetscLayout *);
92981fa06acSBarry Smith PETSC_EXTERN PetscErrorCode MatSetLayouts(Mat, PetscLayout, PetscLayout);
930014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRowsLocal(Mat, PetscInt, const PetscInt[], PetscScalar, Vec, Vec);
931014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRowsLocalIS(Mat, IS, PetscScalar, Vec, Vec);
932014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRowsColumnsLocal(Mat, PetscInt, const PetscInt[], PetscScalar, Vec, Vec);
933014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRowsColumnsLocalIS(Mat, IS, PetscScalar, Vec, Vec);
934e265f6d6SPatrick Sanan PETSC_EXTERN PetscErrorCode MatGetValuesLocal(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[], PetscScalar[]);
935014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetValuesLocal(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[], const PetscScalar[], InsertMode);
936014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetValuesBlockedLocal(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[], const PetscScalar[], InsertMode);
937052efed2SBarry Smith
938014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatStashSetInitialSize(Mat, PetscInt, PetscInt);
939014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatStashGetInfo(Mat, PetscInt *, PetscInt *, PetscInt *, PetscInt *);
94090f02eecSBarry Smith
941014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatInterpolate(Mat, Vec, Vec);
942014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatInterpolateAdd(Mat, Vec, Vec, Vec);
943014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatRestrict(Mat, Vec, Vec);
94430b0564aSStefano Zampini PETSC_EXTERN PetscErrorCode MatMatInterpolate(Mat, Mat, Mat *);
94530b0564aSStefano Zampini PETSC_EXTERN PetscErrorCode MatMatInterpolateAdd(Mat, Mat, Mat, Mat *);
94630b0564aSStefano Zampini PETSC_EXTERN PetscErrorCode MatMatRestrict(Mat, Mat, Mat *);
9472a7a6963SBarry Smith PETSC_EXTERN PetscErrorCode MatCreateVecs(Mat, Vec *, Vec *);
MatGetVecs(Mat mat,Vec * x,Vec * y)948edd03b47SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION(3, 6, 0, "MatCreateVecs()", ) static inline PetscErrorCode MatGetVecs(Mat mat, Vec *x, Vec *y)
949d71ae5a4SJacob Faibussowitsch {
9509371c9d4SSatish Balay return MatCreateVecs(mat, x, y);
9519371c9d4SSatish Balay }
95253cd1579SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateRedundantMatrix(Mat, PetscInt, MPI_Comm, MatReuse, Mat *);
953014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetMultiProcBlock(Mat, MPI_Comm, MatReuse, Mat *);
954014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFindZeroDiagonals(Mat, IS *);
9553a062f41SBarry Smith PETSC_EXTERN PetscErrorCode MatFindOffBlockDiagonalEntries(Mat, IS *);
9569c8f2541SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateMPIMatConcatenateSeqMat(MPI_Comm, Mat, PetscInt, MatReuse, Mat *);
957bd481603SBarry Smith
958fe1fc275SAlexander PETSC_EXTERN PetscErrorCode MatCopyHashToXAIJ(Mat A, Mat B);
959c8d6c325SJunchao Zhang /*@C
9601620fd73SBarry Smith MatSetValue - Set a single entry into a matrix.
9611620fd73SBarry Smith
962e1c5b2e2SJose E. Roman Not Collective
963a9834a7dSSatish Balay
9641620fd73SBarry Smith Input Parameters:
965c8d6c325SJunchao Zhang + mat - the matrix
96616a05f60SBarry Smith . i - the row location of the entry
96716a05f60SBarry Smith . j - the column location of the entry
96816a05f60SBarry Smith . va - the value to insert
96987497f52SBarry Smith - mode - either `INSERT_VALUES` or `ADD_VALUES`
9701620fd73SBarry Smith
9711620fd73SBarry Smith Level: beginner
9721620fd73SBarry Smith
97395bd0b28SBarry Smith Notes:
97495bd0b28SBarry Smith This value may be cached, so `MatAssemblyBegin()` and `MatAssemblyEnd()`
97595bd0b28SBarry Smith MUST be called after all calls to `MatSetValue()` have been completed.
97695bd0b28SBarry Smith
9772ef1f0ffSBarry Smith For efficiency one should use `MatSetValues()` and set several values simultaneously.
9782ef1f0ffSBarry Smith
979b43fc34aSPierre Jolivet .seealso: [](ch_matrices), `Mat`, `MatAssemblyBegin()`, `MatAssemblyEnd()`, `InsertMode`, `MatGetValue()`, `MatSetValues()`,
9802ef1f0ffSBarry Smith `MatSetValueLocal()`, `MatSetValuesLocal()`
981c8d6c325SJunchao Zhang @*/
MatSetValue(Mat mat,PetscInt i,PetscInt j,PetscScalar va,InsertMode mode)982c8d6c325SJunchao Zhang static inline PetscErrorCode MatSetValue(Mat mat, PetscInt i, PetscInt j, PetscScalar va, InsertMode mode)
983d71ae5a4SJacob Faibussowitsch {
984c8d6c325SJunchao Zhang return MatSetValues(mat, 1, &i, 1, &j, &va, mode);
9859371c9d4SSatish Balay }
9861620fd73SBarry Smith
987e5e5a7b5SPatrick Sanan /*@C
988e5e5a7b5SPatrick Sanan MatGetValue - Gets a single value from a matrix
9891620fd73SBarry Smith
990e5e5a7b5SPatrick Sanan Not Collective; can only return a value owned by the given process
991e5e5a7b5SPatrick Sanan
992e5e5a7b5SPatrick Sanan Input Parameters:
993e5e5a7b5SPatrick Sanan + mat - the matrix
994e5e5a7b5SPatrick Sanan . row - the row location of the entry
995e5e5a7b5SPatrick Sanan - col - the column location of the entry
996e5e5a7b5SPatrick Sanan
997e5e5a7b5SPatrick Sanan Output Parameter:
998e5e5a7b5SPatrick Sanan . va - the value
999e5e5a7b5SPatrick Sanan
10002ef1f0ffSBarry Smith Level: advanced
10012ef1f0ffSBarry Smith
1002e5e5a7b5SPatrick Sanan Notes:
1003b43fc34aSPierre Jolivet The matrix must have been assembled with `MatAssemblyBegin()` and `MatAssemblyEnd()` before this call
10042ef1f0ffSBarry Smith
100587497f52SBarry Smith For efficiency one should use `MatGetValues()` and get several values simultaneously.
1006e5e5a7b5SPatrick Sanan
100787497f52SBarry Smith See notes for `MatGetValues()`.
1008e5e5a7b5SPatrick Sanan
1009bfe80ac4SPierre Jolivet .seealso: [](ch_matrices), `Mat`, `MatAssemblyBegin()`, `MatAssemblyEnd()`, `MatSetValue()`, `MatGetValuesLocal()`, `MatGetValues()`
1010e5e5a7b5SPatrick Sanan @*/
MatGetValue(Mat mat,PetscInt row,PetscInt col,PetscScalar * va)1011d71ae5a4SJacob Faibussowitsch static inline PetscErrorCode MatGetValue(Mat mat, PetscInt row, PetscInt col, PetscScalar *va)
1012d71ae5a4SJacob Faibussowitsch {
10139371c9d4SSatish Balay return MatGetValues(mat, 1, &row, 1, &col, va);
10149371c9d4SSatish Balay }
1015e5e5a7b5SPatrick Sanan
1016c8d6c325SJunchao Zhang /*@C
10172ef1f0ffSBarry Smith MatSetValueLocal - Inserts or adds a single value into a matrix, using a local numbering of the nodes.
1018e5e5a7b5SPatrick Sanan
1019e5e5a7b5SPatrick Sanan Not Collective
1020e5e5a7b5SPatrick Sanan
1021e5e5a7b5SPatrick Sanan Input Parameters:
1022c8d6c325SJunchao Zhang + mat - the matrix
102316a05f60SBarry Smith . i - the row location of the entry
102416a05f60SBarry Smith . j - the column location of the entry
102516a05f60SBarry Smith . va - the value to insert
102687497f52SBarry Smith - mode - either `INSERT_VALUES` or `ADD_VALUES`
1027e5e5a7b5SPatrick Sanan
10282ef1f0ffSBarry Smith Level: intermediate
10292ef1f0ffSBarry Smith
1030e5e5a7b5SPatrick Sanan Notes:
103187497f52SBarry Smith For efficiency one should use `MatSetValuesLocal()` and set several values simultaneously.
1032e5e5a7b5SPatrick Sanan
103387497f52SBarry Smith See notes for `MatSetValuesLocal()` for additional information on when and how this function can be used.
1034e5e5a7b5SPatrick Sanan
10351cc06b55SBarry Smith .seealso: [](ch_matrices), `MatSetValue()`, `MatSetValuesLocal()`
1036c8d6c325SJunchao Zhang @*/
MatSetValueLocal(Mat mat,PetscInt i,PetscInt j,PetscScalar va,InsertMode mode)1037c8d6c325SJunchao Zhang static inline PetscErrorCode MatSetValueLocal(Mat mat, PetscInt i, PetscInt j, PetscScalar va, InsertMode mode)
1038d71ae5a4SJacob Faibussowitsch {
1039c8d6c325SJunchao Zhang return MatSetValuesLocal(mat, 1, &i, 1, &j, &va, mode);
10409371c9d4SSatish Balay }
10411620fd73SBarry Smith
10421620fd73SBarry Smith /*MC
1043d0609cedSBarry Smith MatPreallocateBegin - Begins the block of code that will count the number of nonzeros per
1044bd481603SBarry Smith row in a matrix providing the data that one can use to correctly preallocate the matrix.
1045bd481603SBarry Smith
1046bd481603SBarry Smith Synopsis:
1047aaa7dc30SBarry Smith #include <petscmat.h>
1048d0609cedSBarry Smith PetscErrorCode MatPreallocateBegin(MPI_Comm comm, PetscInt nrows, PetscInt ncols, PetscInt *dnz, PetscInt *onz)
1049bd481603SBarry Smith
1050d083f849SBarry Smith Collective
1051bd481603SBarry Smith
1052bd481603SBarry Smith Input Parameters:
1053bd481603SBarry Smith + comm - the communicator that will share the eventually allocated matrix
1054859fcb39SBarry Smith . nrows - the number of LOCAL rows in the matrix
1055859fcb39SBarry Smith - ncols - the number of LOCAL columns in the matrix
1056bd481603SBarry Smith
1057bd481603SBarry Smith Output Parameters:
1058bd481603SBarry Smith + dnz - the array that will be passed to the matrix preallocation routines
1059a6042fd4SStefano Zampini - onz - the other array passed to the matrix preallocation routines
1060bd481603SBarry Smith
10612ef1f0ffSBarry Smith Level: deprecated (since v3.19)
1062bd481603SBarry Smith
1063bd481603SBarry Smith Notes:
10642ef1f0ffSBarry Smith This routine is no longer needed since assembling matrices without explicit preallocation will not be slower than
10652ef1f0ffSBarry Smith the use of this routine
10662ef1f0ffSBarry Smith
1067d0609cedSBarry Smith This is a macro that handles its own error checking, it does not return an error code.
1068d0609cedSBarry Smith
10692ef1f0ffSBarry Smith Do not malloc or free `dnz` and `onz`, that is handled internally by these routines
1070bd481603SBarry Smith
10712ef1f0ffSBarry Smith Developer Note:
1072af27ebaaSBarry Smith This is a MACRO, not a function, because it has a leading { that is closed by `PetscPreallocateFinalize()`.
1073bd481603SBarry Smith
10741cc06b55SBarry Smith .seealso: [](ch_matrices), `MatPreallocateEnd()`, `MatPreallocateSet()`, `MatPreallocateSymmetricSetBlock()`, `MatPreallocateSetLocal()`,
1075db781477SPatrick Sanan `MatPreallocateSymmetricSetLocalBlock()`
1076bd481603SBarry Smith M*/
10779371c9d4SSatish Balay #define MatPreallocateBegin(comm, nrows, ncols, dnz, onz) \
10789371c9d4SSatish Balay do { \
10793ba16761SJacob Faibussowitsch PetscInt __nrows = (nrows), __ncols = (ncols), __rstart, __end = 0; \
10803ba16761SJacob Faibussowitsch PetscInt PETSC_UNUSED __start; \
10819566063dSJacob Faibussowitsch PetscCall(PetscCalloc2(__nrows, &(dnz), __nrows, &(onz))); \
10829566063dSJacob Faibussowitsch PetscCallMPI(MPI_Scan(&__ncols, &__end, 1, MPIU_INT, MPI_SUM, comm)); \
10839371c9d4SSatish Balay __start = __end - __ncols; \
10849371c9d4SSatish Balay (void)__start; \
10859566063dSJacob Faibussowitsch PetscCallMPI(MPI_Scan(&__nrows, &__rstart, 1, MPIU_INT, MPI_SUM, comm)); \
10865f80ce2aSJacob Faibussowitsch __rstart -= __nrows
10877c922b88SBarry Smith
1088edd03b47SJacob Faibussowitsch #define MatPreallocateInitialize(...) PETSC_DEPRECATED_MACRO(3, 18, 0, "MatPreallocateBegin()", ) MatPreallocateBegin(__VA_ARGS__)
1089d0609cedSBarry Smith
1090bd481603SBarry Smith /*MC
1091bd481603SBarry Smith MatPreallocateSetLocal - Indicates the locations (rows and columns) in the matrix where nonzeros will be
1092bd481603SBarry Smith inserted using a local number of the rows and columns
1093bd481603SBarry Smith
1094bd481603SBarry Smith Synopsis:
1095aaa7dc30SBarry Smith #include <petscmat.h>
1096c1ac3661SBarry Smith PetscErrorCode MatPreallocateSetLocal(ISLocalToGlobalMappping map,PetscInt nrows, PetscInt *rows,PetscInt ncols, PetscInt *cols,PetscInt *dnz, PetscInt *onz)
1097bd481603SBarry Smith
1098bd481603SBarry Smith Not Collective
1099bd481603SBarry Smith
1100bd481603SBarry Smith Input Parameters:
1101784ac674SJed Brown + map - the row mapping from local numbering to global numbering
1102bd481603SBarry Smith . nrows - the number of rows indicated
11031d73ed98SBarry Smith . rows - the indices of the rows
1104784ac674SJed Brown . cmap - the column mapping from local to global numbering
1105bd481603SBarry Smith . ncols - the number of columns in the matrix
1106bd481603SBarry Smith . cols - the columns indicated
1107bd481603SBarry Smith . dnz - the array that will be passed to the matrix preallocation routines
1108a6042fd4SStefano Zampini - onz - the other array passed to the matrix preallocation routines
1109bd481603SBarry Smith
11102ef1f0ffSBarry Smith Level: deprecated (since v3.19)
1111bd481603SBarry Smith
1112bd481603SBarry Smith Notes:
11132ef1f0ffSBarry Smith This routine is no longer needed since assembling matrices without explicit preallocation will not be slower than
11142ef1f0ffSBarry Smith the use of this routine
1115bd481603SBarry Smith
11162ef1f0ffSBarry Smith Do not malloc or free `dnz` and `onz`, that is handled internally by these routines
1117bd481603SBarry Smith
11181cc06b55SBarry Smith .seealso: [](ch_matrices), `MatPreallocateEnd()`, `MatPreallocateSet()`, `MatPreallocateSymmetricSetBlock()`
1119db781477SPatrick Sanan `MatPreallocateBegin()`, `MatPreallocateSymmetricSetLocalBlock()`, `MatPreallocateSetLocalRemoveDups()`
1120bd481603SBarry Smith M*/
112194bad497SJacob Faibussowitsch #define MatPreallocateSetLocal(rmap, nrows, rows, cmap, ncols, cols, dnz, onz) \
11229371c9d4SSatish Balay PetscMacroReturnStandard(PetscCall(ISLocalToGlobalMappingApply(rmap, nrows, rows, rows)); PetscCall(ISLocalToGlobalMappingApply(cmap, ncols, cols, cols)); for (PetscInt __l = 0; __l < nrows; __l++) PetscCall(MatPreallocateSet((rows)[__l], ncols, cols, dnz, onz));)
1123c4f061fbSSatish Balay
1124bd481603SBarry Smith /*MC
1125c1154cd5SBarry Smith MatPreallocateSetLocalRemoveDups - Indicates the locations (rows and columns) in the matrix where nonzeros will be
1126c1154cd5SBarry Smith inserted using a local number of the rows and columns. This version removes any duplicate columns in cols
1127c1154cd5SBarry Smith
1128c1154cd5SBarry Smith Synopsis:
1129c1154cd5SBarry Smith #include <petscmat.h>
1130c1154cd5SBarry Smith PetscErrorCode MatPreallocateSetLocalRemoveDups(ISLocalToGlobalMappping map,PetscInt nrows, PetscInt *rows,PetscInt ncols, PetscInt *cols,PetscInt *dnz, PetscInt *onz)
1131c1154cd5SBarry Smith
1132c1154cd5SBarry Smith Not Collective
1133c1154cd5SBarry Smith
1134c1154cd5SBarry Smith Input Parameters:
1135c1154cd5SBarry Smith + map - the row mapping from local numbering to global numbering
1136c1154cd5SBarry Smith . nrows - the number of rows indicated
1137c1154cd5SBarry Smith . rows - the indices of the rows (these values are mapped to the global values)
1138c1154cd5SBarry Smith . cmap - the column mapping from local to global numbering
1139c1154cd5SBarry Smith . ncols - the number of columns in the matrix (this value will be changed if duplicate columns are found)
1140c1154cd5SBarry Smith . cols - the columns indicated (these values are mapped to the global values, they are then sorted and duplicates removed)
1141c1154cd5SBarry Smith . dnz - the array that will be passed to the matrix preallocation routines
1142a6042fd4SStefano Zampini - onz - the other array passed to the matrix preallocation routines
1143c1154cd5SBarry Smith
11442ef1f0ffSBarry Smith Level: deprecated (since v3.19)
1145c1154cd5SBarry Smith
1146c1154cd5SBarry Smith Notes:
11472ef1f0ffSBarry Smith This routine is no longer needed since assembling matrices without explicit preallocation will not be slower than
11482ef1f0ffSBarry Smith the use of this routine
1149c1154cd5SBarry Smith
11502ef1f0ffSBarry Smith Do not malloc or free `dnz` and `onz`, that is handled internally by these routines
1151c1154cd5SBarry Smith
11521cc06b55SBarry Smith .seealso: [](ch_matrices), `MatPreallocateEnd()`, `MatPreallocateSet()`, `MatPreallocateSymmetricSetBlock()`
1153db781477SPatrick Sanan `MatPreallocateBegin()`, `MatPreallocateSymmetricSetLocalBlock()`, `MatPreallocateSetLocal()`
1154c1154cd5SBarry Smith M*/
115594bad497SJacob Faibussowitsch #define MatPreallocateSetLocalRemoveDups(rmap, nrows, rows, cmap, ncols, cols, dnz, onz) \
11569371c9d4SSatish Balay PetscMacroReturnStandard(PetscCall(ISLocalToGlobalMappingApply(rmap, nrows, rows, rows)); PetscCall(ISLocalToGlobalMappingApply(cmap, ncols, cols, cols)); PetscCall(PetscSortRemoveDupsInt(&ncols, cols)); for (PetscInt __l = 0; __l < nrows; __l++) PetscCall(MatPreallocateSet((rows)[__l], ncols, cols, dnz, onz));)
1157c1154cd5SBarry Smith
1158c1154cd5SBarry Smith /*MC
1159d6e23781SBarry Smith MatPreallocateSetLocalBlock - Indicates the locations (rows and columns) in the matrix where nonzeros will be
1160bd481603SBarry Smith inserted using a local number of the rows and columns
1161bd481603SBarry Smith
1162bd481603SBarry Smith Synopsis:
1163aaa7dc30SBarry Smith #include <petscmat.h>
1164d6e23781SBarry Smith PetscErrorCode MatPreallocateSetLocalBlock(ISLocalToGlobalMappping map,PetscInt nrows, PetscInt *rows,PetscInt ncols, PetscInt *cols,PetscInt *dnz, PetscInt *onz)
1165d6e23781SBarry Smith
1166d6e23781SBarry Smith Not Collective
1167d6e23781SBarry Smith
1168d6e23781SBarry Smith Input Parameters:
1169d6e23781SBarry Smith + map - the row mapping from local numbering to global numbering
1170d6e23781SBarry Smith . nrows - the number of rows indicated
1171d6e23781SBarry Smith . rows - the indices of the rows
1172d6e23781SBarry Smith . cmap - the column mapping from local to global numbering
1173d6e23781SBarry Smith . ncols - the number of columns in the matrix
1174d6e23781SBarry Smith . cols - the columns indicated
1175d6e23781SBarry Smith . dnz - the array that will be passed to the matrix preallocation routines
1176a6042fd4SStefano Zampini - onz - the other array passed to the matrix preallocation routines
1177d6e23781SBarry Smith
11782ef1f0ffSBarry Smith Level: deprecated (since v3.19)
1179d6e23781SBarry Smith
1180d6e23781SBarry Smith Notes:
11812ef1f0ffSBarry Smith This routine is no longer needed since assembling matrices without explicit preallocation will not be slower than
11822ef1f0ffSBarry Smith the use of this routine
1183d6e23781SBarry Smith
11842ef1f0ffSBarry Smith Do not malloc or free `dnz` and `onz`, that is handled internally by these routines
1185d6e23781SBarry Smith
11861cc06b55SBarry Smith .seealso: [](ch_matrices), `MatPreallocateEnd()`, `MatPreallocateSet()`, `MatPreallocateSymmetricSetBlock()`
1187db781477SPatrick Sanan `MatPreallocateBegin()`, `MatPreallocateSymmetricSetLocalBlock()`
1188d6e23781SBarry Smith M*/
118994bad497SJacob Faibussowitsch #define MatPreallocateSetLocalBlock(rmap, nrows, rows, cmap, ncols, cols, dnz, onz) \
11909371c9d4SSatish Balay PetscMacroReturnStandard(PetscCall(ISLocalToGlobalMappingApplyBlock(rmap, nrows, rows, rows)); PetscCall(ISLocalToGlobalMappingApplyBlock(cmap, ncols, cols, cols)); for (PetscInt __l = 0; __l < nrows; __l++) PetscCall(MatPreallocateSet((rows)[__l], ncols, cols, dnz, onz));)
1191d6e23781SBarry Smith
1192d6e23781SBarry Smith /*MC
1193d6e23781SBarry Smith MatPreallocateSymmetricSetLocalBlock - Indicates the locations (rows and columns) in the matrix where nonzeros will be
1194d6e23781SBarry Smith inserted using a local number of the rows and columns
1195d6e23781SBarry Smith
1196d6e23781SBarry Smith Synopsis:
1197d6e23781SBarry Smith #include <petscmat.h>
1198d6e23781SBarry Smith PetscErrorCode MatPreallocateSymmetricSetLocalBlock(ISLocalToGlobalMappping map,PetscInt nrows, PetscInt *rows,PetscInt ncols, PetscInt *cols,PetscInt *dnz, PetscInt *onz)
1199bd481603SBarry Smith
1200bd481603SBarry Smith Not Collective
1201bd481603SBarry Smith
1202bd481603SBarry Smith Input Parameters:
1203bd481603SBarry Smith + map - the mapping between local numbering and global numbering
1204bd481603SBarry Smith . nrows - the number of rows indicated
12051d73ed98SBarry Smith . rows - the indices of the rows
1206bd481603SBarry Smith . ncols - the number of columns in the matrix
1207bd481603SBarry Smith . cols - the columns indicated
1208bd481603SBarry Smith . dnz - the array that will be passed to the matrix preallocation routines
1209a6042fd4SStefano Zampini - onz - the other array passed to the matrix preallocation routines
1210bd481603SBarry Smith
12112ef1f0ffSBarry Smith Level: deprecated (since v3.19)
1212bd481603SBarry Smith
1213bd481603SBarry Smith Notes:
12142ef1f0ffSBarry Smith This routine is no longer needed since assembling matrices without explicit preallocation will not be slower than
12152ef1f0ffSBarry Smith the use of this routine
1216bd481603SBarry Smith
12172ef1f0ffSBarry Smith Do not malloc or free `dnz` and `onz` that is handled internally by these routines
1218bd481603SBarry Smith
12191cc06b55SBarry Smith .seealso: [](ch_matrices), `MatPreallocateEnd()`, `MatPreallocateSet()`
1220db781477SPatrick Sanan `MatPreallocateBegin()`, `MatPreallocateSetLocal()`
1221bd481603SBarry Smith M*/
122294bad497SJacob Faibussowitsch #define MatPreallocateSymmetricSetLocalBlock(map, nrows, rows, ncols, cols, dnz, onz) \
12239371c9d4SSatish Balay PetscMacroReturnStandard(PetscCall(ISLocalToGlobalMappingApplyBlock(map, nrows, rows, rows)); PetscCall(ISLocalToGlobalMappingApplyBlock(map, ncols, cols, cols)); for (PetscInt __l = 0; __l < nrows; __l++) PetscCall(MatPreallocateSymmetricSetBlock((rows)[__l], ncols, cols, dnz, onz));)
1224e83a5d19SLisandro Dalcin
1225bd481603SBarry Smith /*MC
1226bd481603SBarry Smith MatPreallocateSet - Indicates the locations (rows and columns) in the matrix where nonzeros will be
1227bd481603SBarry Smith inserted using a local number of the rows and columns
1228bd481603SBarry Smith
1229bd481603SBarry Smith Synopsis:
1230aaa7dc30SBarry Smith #include <petscmat.h>
1231c1ac3661SBarry Smith PetscErrorCode MatPreallocateSet(PetscInt nrows, PetscInt *rows,PetscInt ncols, PetscInt *cols,PetscInt *dnz, PetscInt *onz)
1232bd481603SBarry Smith
1233bd481603SBarry Smith Not Collective
1234bd481603SBarry Smith
1235bd481603SBarry Smith Input Parameters:
123664075487SBarry Smith + row - the row
1237bd481603SBarry Smith . ncols - the number of columns in the matrix
1238a50f8bf6SHong Zhang - cols - the columns indicated
1239a50f8bf6SHong Zhang
1240a50f8bf6SHong Zhang Output Parameters:
1241a50f8bf6SHong Zhang + dnz - the array that will be passed to the matrix preallocation routines
1242a6042fd4SStefano Zampini - onz - the other array passed to the matrix preallocation routines
1243bd481603SBarry Smith
12442ef1f0ffSBarry Smith Level: deprecated (since v3.19)
1245bd481603SBarry Smith
1246bd481603SBarry Smith Notes:
12472ef1f0ffSBarry Smith This routine is no longer needed since assembling matrices without explicit preallocation will not be slower than
12482ef1f0ffSBarry Smith the use of this routine
1249bd481603SBarry Smith
12502ef1f0ffSBarry Smith Do not malloc or free `dnz` and `onz` that is handled internally by these routines
1251bd481603SBarry Smith
1252af27ebaaSBarry Smith This is a MACRO, not a function, because it uses variables declared in MatPreallocateBegin().
12531620fd73SBarry Smith
12541cc06b55SBarry Smith .seealso: [](ch_matrices), `MatPreallocateEnd()`, `MatPreallocateSet()`, `MatPreallocateSymmetricSetBlock()`
1255db781477SPatrick Sanan `MatPreallocateBegin()`, `MatPreallocateSetLocal()`
1256bd481603SBarry Smith M*/
12579371c9d4SSatish Balay #define MatPreallocateSet(row, nc, cols, dnz, onz) \
12589371c9d4SSatish Balay PetscMacroReturnStandard(PetscCheck(row >= __rstart, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Trying to set preallocation for row %" PetscInt_FMT " less than first local row %" PetscInt_FMT, row, __rstart); PetscCheck(row < __rstart + __nrows, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Trying to set preallocation for row %" PetscInt_FMT " greater than last local row %" PetscInt_FMT, row, __rstart + __nrows - 1); for (PetscInt __i = 0; __i < nc; ++__i) { \
125964075487SBarry Smith if ((cols)[__i] < __start || (cols)[__i] >= __end) onz[row - __rstart]++; \
1260a6042fd4SStefano Zampini else if (dnz[row - __rstart] < __ncols) dnz[row - __rstart]++; \
12619371c9d4SSatish Balay })
12627c922b88SBarry Smith
1263bd481603SBarry Smith /*MC
1264d6e23781SBarry Smith MatPreallocateSymmetricSetBlock - Indicates the locations (rows and columns) in the matrix where nonzeros will be
1265bd481603SBarry Smith inserted using a local number of the rows and columns
1266bd481603SBarry Smith
1267bd481603SBarry Smith Synopsis:
1268aaa7dc30SBarry Smith #include <petscmat.h>
1269d6e23781SBarry Smith PetscErrorCode MatPreallocateSymmetricSetBlock(PetscInt nrows, PetscInt *rows,PetscInt ncols, PetscInt *cols,PetscInt *dnz, PetscInt *onz)
1270bd481603SBarry Smith
1271bd481603SBarry Smith Not Collective
1272bd481603SBarry Smith
1273bd481603SBarry Smith Input Parameters:
1274bd481603SBarry Smith + nrows - the number of rows indicated
12751d73ed98SBarry Smith . rows - the indices of the rows
1276bd481603SBarry Smith . ncols - the number of columns in the matrix
1277bd481603SBarry Smith . cols - the columns indicated
1278bd481603SBarry Smith . dnz - the array that will be passed to the matrix preallocation routines
1279a6042fd4SStefano Zampini - onz - the other array passed to the matrix preallocation routines
1280bd481603SBarry Smith
12812ef1f0ffSBarry Smith Level: deprecated (since v3.19)
1282bd481603SBarry Smith
1283bd481603SBarry Smith Notes:
12842ef1f0ffSBarry Smith This routine is no longer needed since assembling matrices without explicit preallocation will not be slower than
12852ef1f0ffSBarry Smith the use of this routine
1286bd481603SBarry Smith
12872ef1f0ffSBarry Smith Do not malloc or free `dnz` and `onz` that is handled internally by these routines
1288bd481603SBarry Smith
1289af27ebaaSBarry Smith This is a MACRO, not a function, because it uses variables declared in MatPreallocateBegin().
12901620fd73SBarry Smith
12911cc06b55SBarry Smith .seealso: [](ch_matrices), `MatPreallocateEnd()`, `MatPreallocateSet()`, `MatPreallocateBegin()`,
1292db781477SPatrick Sanan `MatPreallocateSymmetricSetLocalBlock()`, `MatPreallocateSetLocal()`
1293bd481603SBarry Smith M*/
129494bad497SJacob Faibussowitsch #define MatPreallocateSymmetricSetBlock(row, nc, cols, dnz, onz) \
12959371c9d4SSatish Balay PetscMacroReturnStandard(for (PetscInt __i = 0; __i < nc; __i++) { \
1296d3d32019SBarry Smith if (cols[__i] >= __end) onz[row - __rstart]++; \
1297a6042fd4SStefano Zampini else if (cols[__i] >= row && dnz[row - __rstart] < __ncols) dnz[row - __rstart]++; \
12989371c9d4SSatish Balay })
1299d3d32019SBarry Smith
1300bd481603SBarry Smith /*MC
1301a6042fd4SStefano Zampini MatPreallocateLocation - An alternative to MatPreallocateSet() that puts the nonzero locations into the matrix if it exists
130216371a99SBarry Smith
130316371a99SBarry Smith Synopsis:
1304aaa7dc30SBarry Smith #include <petscmat.h>
130516371a99SBarry Smith PetscErrorCode MatPreallocateLocations(Mat A,PetscInt row,PetscInt ncols,PetscInt *cols,PetscInt *dnz,PetscInt *onz)
130616371a99SBarry Smith
130716371a99SBarry Smith Not Collective
130816371a99SBarry Smith
130916371a99SBarry Smith Input Parameters:
1310a2b725a8SWilliam Gropp + A - matrix
131116371a99SBarry Smith . row - row where values exist (must be local to this process)
131216371a99SBarry Smith . ncols - number of columns
131316371a99SBarry Smith . cols - columns with nonzeros
131416371a99SBarry Smith . dnz - the array that will be passed to the matrix preallocation routines
1315a6042fd4SStefano Zampini - onz - the other array passed to the matrix preallocation routines
131616371a99SBarry Smith
13172ef1f0ffSBarry Smith Level: deprecated (since v3.19)
131816371a99SBarry Smith
131916371a99SBarry Smith Notes:
13202ef1f0ffSBarry Smith This routine is no longer needed since assembling matrices without explicit preallocation will not be slower than
13212ef1f0ffSBarry Smith the use of this routine
132216371a99SBarry Smith
13232ef1f0ffSBarry Smith Do not malloc or free `dnz` and `onz` that is handled internally by these routines
132416371a99SBarry Smith
1325af27ebaaSBarry Smith Developer Note:
1326af27ebaaSBarry Smith This is a MACRO, not a function, because it uses a bunch of variables private to the MatPreallocation.... routines.
132716371a99SBarry Smith
13281cc06b55SBarry Smith .seealso: [](ch_matrices), `MatPreallocateBegin()`, `MatPreallocateSet()`, `MatPreallocateSymmetricSetBlock()`, `MatPreallocateSetLocal()`,
1329db781477SPatrick Sanan `MatPreallocateSymmetricSetLocalBlock()`
133016371a99SBarry Smith M*/
1331d0609cedSBarry Smith #define MatPreallocateLocation(A, row, ncols, cols, dnz, onz) (A ? MatSetValues(A, 1, &row, ncols, cols, NULL, INSERT_VALUES) : MatPreallocateSet(row, ncols, cols, dnz, onz))
133216371a99SBarry Smith
133316371a99SBarry Smith /*MC
1334d0609cedSBarry Smith MatPreallocateEnd - Ends the block of code that will count the number of nonzeros per
1335bd481603SBarry Smith row in a matrix providing the data that one can use to correctly preallocate the matrix.
1336bd481603SBarry Smith
1337bd481603SBarry Smith Synopsis:
1338aaa7dc30SBarry Smith #include <petscmat.h>
1339d0609cedSBarry Smith PetscErrorCode MatPreallocateEnd(PetscInt *dnz, PetscInt *onz)
1340bd481603SBarry Smith
1341d083f849SBarry Smith Collective
1342bd481603SBarry Smith
1343bd481603SBarry Smith Input Parameters:
134416371a99SBarry Smith + dnz - the array that was be passed to the matrix preallocation routines
1345a6042fd4SStefano Zampini - onz - the other array passed to the matrix preallocation routines
1346bd481603SBarry Smith
13472ef1f0ffSBarry Smith Level: deprecated (since v3.19)
1348bd481603SBarry Smith
1349bd481603SBarry Smith Notes:
13502ef1f0ffSBarry Smith This routine is no longer needed since assembling matrices without explicit preallocation will not be slower than
13512ef1f0ffSBarry Smith the use of this routine
1352d0609cedSBarry Smith
13532ef1f0ffSBarry Smith Do not malloc or free `dnz` and `onz`, that is handled internally by these routines
1354bd481603SBarry Smith
13552ef1f0ffSBarry Smith Developer Note:
1356af27ebaaSBarry Smith This is a MACRO, not a function, because it closes the { started in MatPreallocateBegin().
13571620fd73SBarry Smith
13581cc06b55SBarry Smith .seealso: [](ch_matrices), `MatPreallocateBegin()`, `MatPreallocateSet()`, `MatPreallocateSymmetricSetBlock()`, `MatPreallocateSetLocal()`,
1359db781477SPatrick Sanan `MatPreallocateSymmetricSetLocalBlock()`
1360bd481603SBarry Smith M*/
13619371c9d4SSatish Balay #define MatPreallocateEnd(dnz, onz) \
13629371c9d4SSatish Balay PetscCall(PetscFree2(dnz, onz)); \
13639371c9d4SSatish Balay } \
13649371c9d4SSatish Balay while (0)
1365d0609cedSBarry Smith
1366edd03b47SJacob Faibussowitsch #define MatPreallocateFinalize(...) PETSC_DEPRECATED_MACRO(3, 18, 0, "MatPreallocateEnd()", ) MatPreallocateEnd(__VA_ARGS__)
13677c922b88SBarry Smith
13687b80b807SBarry Smith /* Routines unique to particular data structures */
13692a8381b2SBarry Smith PETSC_EXTERN PetscErrorCode MatShellGetContext(Mat, PetscCtxRt);
1370698d4c6aSKris Buschelman
1371014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatInodeAdjustForInodes(Mat, IS *, IS *);
1372014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatInodeGetInodeSizes(Mat, PetscInt *, PetscInt *[], PetscInt *);
1373698d4c6aSKris Buschelman
1374014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSeqAIJSetColumnIndices(Mat, PetscInt[]);
1375014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSeqBAIJSetColumnIndices(Mat, PetscInt[]);
1376014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqAIJWithArrays(MPI_Comm, PetscInt, PetscInt, PetscInt[], PetscInt[], PetscScalar[], Mat *);
1377014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqBAIJWithArrays(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt[], PetscInt[], PetscScalar[], Mat *);
1378014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqSBAIJWithArrays(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt[], PetscInt[], PetscScalar[], Mat *);
1379ce78bad3SBarry Smith PETSC_EXTERN PetscErrorCode MatCreateSeqAIJFromTriple(MPI_Comm, PetscInt, PetscInt, PetscInt[], PetscInt[], PetscScalar[], Mat *, PetscCount, PetscBool);
13807b80b807SBarry Smith
1381a96a251dSBarry Smith #define MAT_SKIP_ALLOCATION -4
1382a96a251dSBarry Smith
1383014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSeqBAIJSetPreallocation(Mat, PetscInt, PetscInt, const PetscInt[]);
1384014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSeqSBAIJSetPreallocation(Mat, PetscInt, PetscInt, const PetscInt[]);
1385014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSeqAIJSetPreallocation(Mat, PetscInt, const PetscInt[]);
138619b08ed1SBarry Smith PETSC_EXTERN PetscErrorCode MatSeqAIJSetTotalPreallocation(Mat, PetscInt);
1387273d9f13SBarry Smith
1388014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIBAIJSetPreallocation(Mat, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[]);
1389014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPISBAIJSetPreallocation(Mat, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[]);
1390014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIAIJSetPreallocation(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[]);
1391014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSeqAIJSetPreallocationCSR(Mat, const PetscInt[], const PetscInt[], const PetscScalar[]);
1392014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSeqBAIJSetPreallocationCSR(Mat, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[]);
1393014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIAIJSetPreallocationCSR(Mat, const PetscInt[], const PetscInt[], const PetscScalar[]);
1394014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIBAIJSetPreallocationCSR(Mat, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[]);
1395014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIAdjSetPreallocation(Mat, PetscInt[], PetscInt[], PetscInt[]);
1396b44e7856SBarry Smith PETSC_EXTERN PetscErrorCode MatMPIAdjToSeq(Mat, Mat *);
1397252a1336SBarry Smith PETSC_EXTERN PetscErrorCode MatMPIAdjToSeqRankZero(Mat, Mat *);
1398014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIDenseSetPreallocation(Mat, PetscScalar[]);
1399014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSeqDenseSetPreallocation(Mat, PetscScalar[]);
14009230625dSJed Brown PETSC_EXTERN PetscErrorCode MatMPIAIJGetSeqAIJ(Mat, Mat *, Mat *, const PetscInt *[]);
14019230625dSJed Brown PETSC_EXTERN PetscErrorCode MatMPIBAIJGetSeqBAIJ(Mat, Mat *, Mat *, const PetscInt *[]);
1402014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIAdjCreateNonemptySubcommMat(Mat, Mat *);
1403273d9f13SBarry Smith
140449a6ff4bSBarry Smith PETSC_EXTERN PetscErrorCode MatDenseGetLDA(Mat, PetscInt *);
1405ad16ce7aSStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseSetLDA(Mat, PetscInt);
MatSeqDenseSetLDA(Mat A,PetscInt lda)1406edd03b47SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION(3, 14, 0, "MatDenseSetLDA()", ) static inline PetscErrorCode MatSeqDenseSetLDA(Mat A, PetscInt lda)
1407d71ae5a4SJacob Faibussowitsch {
14089371c9d4SSatish Balay return MatDenseSetLDA(A, lda);
14099371c9d4SSatish Balay }
1410014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatDenseGetLocalMatrix(Mat, Mat *);
14111b807ce4Svictorle
1412621e819fSSatish Balay PETSC_EXTERN PetscErrorCode MatBlockMatSetPreallocation(Mat, PetscInt, PetscInt, const PetscInt[]);
1413621e819fSSatish Balay
1414014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatStoreValues(Mat);
1415014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatRetrieveValues(Mat);
14162e8a6d31SBarry Smith
1417014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFindNonzeroRows(Mat, IS *);
14187cfe41e4SPatrick Farrell PETSC_EXTERN PetscErrorCode MatFindZeroRows(Mat, IS *);
14197b80b807SBarry Smith /*
14207b80b807SBarry Smith These routines are not usually accessed directly, rather solving is
142194b7f48cSBarry Smith done through the KSP and PC interfaces.
14227b80b807SBarry Smith */
14237b80b807SBarry Smith
142476bdecfbSBarry Smith /*J
14252ef1f0ffSBarry Smith MatOrderingType - String with the name of a PETSc matrix ordering. These orderings are most commonly used
14262ef1f0ffSBarry Smith to reduce fill in sparse factorizations.
1427d9274352SBarry Smith
1428d9274352SBarry Smith Level: beginner
1429d9274352SBarry Smith
14302c7c0729SBarry Smith Notes:
143116a05f60SBarry Smith If `MATORDERINGEXTERNAL` is used then PETSc does not compute an ordering and instead the external factorization solver package called utilizes one
143216a05f60SBarry Smith of its own.
14332c7c0729SBarry Smith
14342ef1f0ffSBarry Smith There is no `MatOrdering` object, the ordering is obtained directly from the matrix with `MatGetOrdering()`
14352ef1f0ffSBarry Smith
14362ef1f0ffSBarry Smith Developer Note:
14372ef1f0ffSBarry Smith This API should be converted to an API similar to those for `MatColoring` and `MatPartitioning`
14382ef1f0ffSBarry Smith
14391cc06b55SBarry Smith .seealso: [](ch_matrices), [](sec_graph), `MatGetFactor()`, `MatGetOrdering()`, `MatColoringType`, `MatPartitioningType`, `MatCoarsenType`, `MatCoarsenType`,
14402ef1f0ffSBarry Smith `PCFactorSetOrderingType()`
144176bdecfbSBarry Smith J*/
144219fd82e9SBarry Smith typedef const char *MatOrderingType;
14432692d6eeSBarry Smith #define MATORDERINGNATURAL "natural"
14442692d6eeSBarry Smith #define MATORDERINGND "nd"
14452692d6eeSBarry Smith #define MATORDERING1WD "1wd"
14462692d6eeSBarry Smith #define MATORDERINGRCM "rcm"
14472692d6eeSBarry Smith #define MATORDERINGQMD "qmd"
14482692d6eeSBarry Smith #define MATORDERINGROWLENGTH "rowlength"
1449510184a7SJed Brown #define MATORDERINGWBM "wbm"
1450fc1bef75SJed Brown #define MATORDERINGSPECTRAL "spectral"
1451312e372aSBarry Smith #define MATORDERINGAMD "amd" /* only works if UMFPACK is installed with PETSc */
1452048412efSPablo Brubeck #define MATORDERINGMETISND "metisnd" /* only works if METIS is installed with PETSc */
14539bd791bbSBarry Smith #define MATORDERINGNATURAL_OR_ND "natural_or_nd" /* special coase used for Cholesky and ICC, allows ND when AIJ matrix is used but Natural when SBAIJ is used */
14542c7c0729SBarry Smith #define MATORDERINGEXTERNAL "external" /* uses an ordering type internal to the factorization package */
1455b12f92e5SBarry Smith
145619fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode MatGetOrdering(Mat, MatOrderingType, IS *, IS *);
1457140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode MatGetOrderingList(PetscFunctionList *);
1458bdf89e91SBarry Smith PETSC_EXTERN PetscErrorCode MatOrderingRegister(const char[], PetscErrorCode (*)(Mat, MatOrderingType, IS *, IS *));
1459140e18c1SBarry Smith PETSC_EXTERN PetscFunctionList MatOrderingList;
1460d4fbbf0eSBarry Smith
1461013e2dc7SBarry Smith #include "petscmatcoarsen.h"
1462013e2dc7SBarry Smith
1463014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatReorderForNonzeroDiagonal(Mat, PetscReal, IS, IS);
1464fc1bef75SJed Brown PETSC_EXTERN PetscErrorCode MatCreateLaplacian(Mat, PetscReal, PetscBool, Mat *);
1465a2ce50c7SBarry Smith
14664ac6704cSBarry Smith PETSC_EXTERN PetscErrorCode MatFactorGetPreferredOrdering(Mat, MatFactorType, MatOrderingType *);
14674ac6704cSBarry Smith
1468d91e6319SBarry Smith /*S
14692ef1f0ffSBarry Smith MatFactorShiftType - Type of numeric shift used for factorizations
1470d90ac83dSHong Zhang
14712ef1f0ffSBarry Smith Values:
14722ef1f0ffSBarry Smith + `MAT_SHIFT_NONE` - do not shift the matrix diagonal entries
14732ef1f0ffSBarry Smith . `MAT_SHIFT_NONZERO` - shift the entries to be non-zero
14742ef1f0ffSBarry Smith . `MAT_SHIFT_POSITIVE_DEFINITE` - shift the entries to force the factorization to be positive definite
14752ef1f0ffSBarry Smith - `MAT_SHIFT_INBLOCKS` - only shift the factors inside the small dense diagonal blocks of the matrix, for example with `MATBAIJ`
1476d90ac83dSHong Zhang
14772ef1f0ffSBarry Smith Level: intermediate
14782ef1f0ffSBarry Smith
14791cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatGetFactor()`, `PCFactorSetShiftType()`
1480d90ac83dSHong Zhang S*/
14819371c9d4SSatish Balay typedef enum {
14829371c9d4SSatish Balay MAT_SHIFT_NONE,
14839371c9d4SSatish Balay MAT_SHIFT_NONZERO,
14849371c9d4SSatish Balay MAT_SHIFT_POSITIVE_DEFINITE,
14859371c9d4SSatish Balay MAT_SHIFT_INBLOCKS
14869371c9d4SSatish Balay } MatFactorShiftType;
14876a6fc655SJed Brown PETSC_EXTERN const char *const MatFactorShiftTypes[];
14885e9742b9SJed Brown PETSC_EXTERN const char *const MatFactorShiftTypesDetail[];
1489d90ac83dSHong Zhang
1490d90ac83dSHong Zhang /*S
1491ec5066bdSBarry Smith MatFactorError - indicates what type of error was generated in a matrix factorization
14929aa7eafdSHong Zhang
14932ef1f0ffSBarry Smith Values:
14942ef1f0ffSBarry Smith + `MAT_FACTOR_NOERROR` - there was no error during the factorization
14952ef1f0ffSBarry Smith . `MAT_FACTOR_STRUCT_ZEROPIVOT` - there was a missing entry in a diagonal location of the matrix
14962ef1f0ffSBarry Smith . `MAT_FACTOR_NUMERIC_ZEROPIVOT` - there was a (near) zero pivot during the factorization
14972ef1f0ffSBarry Smith . `MAT_FACTOR_OUTMEMORY` - the factorization has run out of memory
14982ef1f0ffSBarry Smith - `MAT_FACTOR_OTHER` - some other error has occurred.
14999aa7eafdSHong Zhang
15002ef1f0ffSBarry Smith Level: intermediate
150100e125f8SBarry Smith
15022ef1f0ffSBarry Smith Note:
15032ef1f0ffSBarry Smith When a factorization is done in a preconditioner `PC` the error may be propagated up to a `PCFailedReason` or a `KSPConvergedReason`
15042ef1f0ffSBarry Smith
15051cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatGetFactor()`, `MatFactorGetError()`, `MatFactorGetErrorZeroPivot()`, `MatFactorClearError()`,
15062ef1f0ffSBarry Smith `PCFailedReason`, `PCGetFailedReason()`, `KSPConvergedReason`
15079aa7eafdSHong Zhang S*/
15089371c9d4SSatish Balay typedef enum {
15099371c9d4SSatish Balay MAT_FACTOR_NOERROR,
15109371c9d4SSatish Balay MAT_FACTOR_STRUCT_ZEROPIVOT,
15119371c9d4SSatish Balay MAT_FACTOR_NUMERIC_ZEROPIVOT,
15129371c9d4SSatish Balay MAT_FACTOR_OUTMEMORY,
15139371c9d4SSatish Balay MAT_FACTOR_OTHER
15149371c9d4SSatish Balay } MatFactorError;
15159aa7eafdSHong Zhang
151600e125f8SBarry Smith PETSC_EXTERN PetscErrorCode MatFactorGetError(Mat, MatFactorError *);
1517b8b68cfdSBarry Smith PETSC_EXTERN PetscErrorCode MatFactorClearError(Mat);
15187b6c816cSBarry Smith PETSC_EXTERN PetscErrorCode MatFactorGetErrorZeroPivot(Mat, PetscReal *, PetscInt *);
151900e125f8SBarry Smith
15209aa7eafdSHong Zhang /*S
1521422a814eSBarry Smith MatFactorInfo - Data passed into the matrix factorization routines, and information about the resulting factorization
1522b00f7748SHong Zhang
1523b00f7748SHong Zhang Level: developer
1524b00f7748SHong Zhang
15252ef1f0ffSBarry Smith Note:
15262ef1f0ffSBarry Smith You can use `MatFactorInfoInitialize()` to set default values.
1527b00f7748SHong Zhang
15282ef1f0ffSBarry Smith Fortran Note:
1529687234bfSJose E. Roman `MatFactorInfo` is a derived type, use e.g. `matfactorinfo%dt` to access its components.
15302ef1f0ffSBarry Smith
15311cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatInfo`, `MatGetFactor()`, `MatLUFactorSymbolic()`, `MatILUFactorSymbolic()`, `MatCholeskyFactorSymbolic()`,
15322ef1f0ffSBarry Smith `MatICCFactorSymbolic()`, `MatICCFactor()`, `MatFactorInfoInitialize()`
1533b00f7748SHong Zhang S*/
1534b00f7748SHong Zhang typedef struct {
153515e8a5b3SHong Zhang PetscReal diagonal_fill; /* force diagonal to fill in if initially not filled */
153685317021SBarry Smith PetscReal usedt;
153715e8a5b3SHong Zhang PetscReal dt; /* drop tolerance */
1538b00f7748SHong Zhang PetscReal dtcol; /* tolerance for pivoting */
153915e8a5b3SHong Zhang PetscReal dtcount; /* maximum nonzeros to be allowed per row */
154067e28bfeSBarry Smith PetscReal fill; /* expected fill, nonzeros in factored matrix/nonzeros in original matrix */
1541348344bbSBarry Smith PetscReal levels; /* ICC/ILU(levels) */
1542ce78bad3SBarry Smith PetscReal pivotinblocks; /* BAIJ and SBAIJ matrices pivot in factorization on blocks, default 1.0 factorization may be faster if do not pivot */
154315e8a5b3SHong Zhang PetscReal zeropivot; /* pivot is called zero if less than this */
1544f4db908eSBarry Smith PetscReal shifttype; /* type of shift added to matrix factor to prevent zero pivots */
1545f4db908eSBarry Smith PetscReal shiftamount; /* how large the shift is */
1546f82ac72cSJunchao Zhang PetscBool factoronhost; /* do factorization on host instead of device (for device matrix types) */
1547f82ac72cSJunchao Zhang PetscBool solveonhost; /* do mat solve on host with the factor (for device matrix types) */
154815e8a5b3SHong Zhang } MatFactorInfo;
1549ffa6d0a5SLois Curfman McInnes
1550014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFactorInfoInitialize(MatFactorInfo *);
15519a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatCholeskyFactor(Mat, IS, const MatFactorInfo *);
15529a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatCholeskyFactorSymbolic(Mat, Mat, IS, const MatFactorInfo *);
15539a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatCholeskyFactorNumeric(Mat, Mat, const MatFactorInfo *);
15549a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatLUFactor(Mat, IS, IS, const MatFactorInfo *);
15559a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatILUFactor(Mat, IS, IS, const MatFactorInfo *);
15569a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatLUFactorSymbolic(Mat, Mat, IS, IS, const MatFactorInfo *);
15579a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatILUFactorSymbolic(Mat, Mat, IS, IS, const MatFactorInfo *);
15589a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatICCFactorSymbolic(Mat, Mat, IS, const MatFactorInfo *);
15599a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatICCFactor(Mat, IS, const MatFactorInfo *);
15609a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatLUFactorNumeric(Mat, Mat, const MatFactorInfo *);
15613f498edaSToby Isaac PETSC_EXTERN PetscErrorCode MatQRFactor(Mat, IS, const MatFactorInfo *);
15623f498edaSToby Isaac PETSC_EXTERN PetscErrorCode MatQRFactorSymbolic(Mat, Mat, IS, const MatFactorInfo *);
15633f498edaSToby Isaac PETSC_EXTERN PetscErrorCode MatQRFactorNumeric(Mat, Mat, const MatFactorInfo *);
1564014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetInertia(Mat, PetscInt *, PetscInt *, PetscInt *);
1565014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSolve(Mat, Vec, Vec);
1566014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatForwardSolve(Mat, Vec, Vec);
1567014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatBackwardSolve(Mat, Vec, Vec);
1568014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSolveAdd(Mat, Vec, Vec, Vec);
1569014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSolveTranspose(Mat, Vec, Vec);
1570014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSolveTransposeAdd(Mat, Vec, Vec, Vec);
1571014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSolves(Mat, Vecs, Vecs);
15727c2f51b8SStefano Zampini PETSC_EXTERN PetscErrorCode MatSetUnfactored(Mat);
15737c2f51b8SStefano Zampini
15749371c9d4SSatish Balay typedef enum {
15759371c9d4SSatish Balay MAT_FACTOR_SCHUR_UNFACTORED,
15769371c9d4SSatish Balay MAT_FACTOR_SCHUR_FACTORED,
15779371c9d4SSatish Balay MAT_FACTOR_SCHUR_INVERTED
15789371c9d4SSatish Balay } MatFactorSchurStatus;
15798e7ba810SStefano Zampini PETSC_EXTERN PetscErrorCode MatFactorSetSchurIS(Mat, IS);
15807c2f51b8SStefano Zampini PETSC_EXTERN PetscErrorCode MatFactorGetSchurComplement(Mat, Mat *, MatFactorSchurStatus *);
15817c2f51b8SStefano Zampini PETSC_EXTERN PetscErrorCode MatFactorRestoreSchurComplement(Mat, Mat *, MatFactorSchurStatus);
15825a05ddb0SStefano Zampini PETSC_EXTERN PetscErrorCode MatFactorInvertSchurComplement(Mat);
15837c2f51b8SStefano Zampini PETSC_EXTERN PetscErrorCode MatFactorCreateSchurComplement(Mat, Mat *, MatFactorSchurStatus *);
15845a05ddb0SStefano Zampini PETSC_EXTERN PetscErrorCode MatFactorSolveSchurComplement(Mat, Vec, Vec);
15855a05ddb0SStefano Zampini PETSC_EXTERN PetscErrorCode MatFactorSolveSchurComplementTranspose(Mat, Vec, Vec);
15866dba178dSStefano Zampini PETSC_EXTERN PetscErrorCode MatFactorFactorizeSchurComplement(Mat);
1587bb5a7306SBarry Smith
15888a9c020eSBarry Smith PETSC_EXTERN PetscErrorCode MatSeqDenseInvert(Mat);
1589d91e6319SBarry Smith /*E
1590d91e6319SBarry Smith MatSORType - What type of (S)SOR to perform
1591bb1eb677SSatish Balay
15922ef1f0ffSBarry Smith Values:
15932ef1f0ffSBarry Smith + `SOR_FORWARD_SWEEP` - do a sweep from the first row of the matrix to the last
15942ef1f0ffSBarry Smith . `SOR_BACKWARD_SWEEP` - do a sweep from the last row to the first
15952ef1f0ffSBarry Smith . `SOR_SYMMETRIC_SWEEP` - do a sweep from the first row to the last and then back to the first
1596af27ebaaSBarry Smith . `SOR_LOCAL_FORWARD_SWEEP` - each MPI process does its own forward sweep with no communication
1597af27ebaaSBarry Smith . `SOR_LOCAL_BACKWARD_SWEEP` - each MPI process does its own backward sweep with no communication
1598af27ebaaSBarry Smith . `SOR_LOCAL_SYMMETRIC_SWEEP` - each MPI process does its own symmetric sweep with no communication
15992ef1f0ffSBarry Smith . `SOR_ZERO_INITIAL_GUESS` - indicates the initial solution is zero so the sweep can avoid unneeded computation
16002ef1f0ffSBarry Smith . `SOR_EISENSTAT` - apply the Eisentat application of SOR, see `PCEISENSTAT`
16012ef1f0ffSBarry Smith . `SOR_APPLY_UPPER` - multiply by the upper triangular portion of the matrix
16022ef1f0ffSBarry Smith - `SOR_APPLY_LOWER` - multiply by the lower triangular portion of the matrix
16032ef1f0ffSBarry Smith
1604d91e6319SBarry Smith Level: beginner
1605d91e6319SBarry Smith
16062ef1f0ffSBarry Smith Note:
16072ef1f0ffSBarry Smith These may be bitwise ORd together
1608d9274352SBarry Smith
16092ef1f0ffSBarry Smith Developer Note:
16102ef1f0ffSBarry Smith Since `MatSORType` may be bitwise ORd together, so do not change the numerical values below
1611d91e6319SBarry Smith
16121cc06b55SBarry Smith .seealso: [](ch_matrices), `MatSOR()`
1613d91e6319SBarry Smith E*/
16149371c9d4SSatish Balay typedef enum {
16159371c9d4SSatish Balay SOR_FORWARD_SWEEP = 1,
16169371c9d4SSatish Balay SOR_BACKWARD_SWEEP = 2,
16179371c9d4SSatish Balay SOR_SYMMETRIC_SWEEP = 3,
16189371c9d4SSatish Balay SOR_LOCAL_FORWARD_SWEEP = 4,
16199371c9d4SSatish Balay SOR_LOCAL_BACKWARD_SWEEP = 8,
16209371c9d4SSatish Balay SOR_LOCAL_SYMMETRIC_SWEEP = 12,
16219371c9d4SSatish Balay SOR_ZERO_INITIAL_GUESS = 16,
16229371c9d4SSatish Balay SOR_EISENSTAT = 32,
16239371c9d4SSatish Balay SOR_APPLY_UPPER = 64,
16249371c9d4SSatish Balay SOR_APPLY_LOWER = 128
16259371c9d4SSatish Balay } MatSORType;
1626014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSOR(Mat, Vec, PetscReal, MatSORType, PetscReal, PetscInt, PetscInt, Vec);
16278ed539a5SBarry Smith
16287086a01eSPeter Brune /*S
16297086a01eSPeter Brune MatColoring - Object for managing the coloring of matrices.
16307086a01eSPeter Brune
16317086a01eSPeter Brune Level: beginner
16327086a01eSPeter Brune
1633ec5066bdSBarry Smith Notes:
163487497f52SBarry Smith Coloring of matrices can be computed directly from the sparse matrix nonzero structure via the `MatColoring` object or from the mesh from which the
163587497f52SBarry Smith matrix comes from via `DMCreateColoring()`. In general using the mesh produces a more optimal coloring (fewer colors).
1636ec5066bdSBarry Smith
163787497f52SBarry Smith Once a coloring is available `MatFDColoringCreate()` creates an object that can be used to efficiently compute Jacobians using that coloring. This
16382ef1f0ffSBarry Smith same object can also be used to efficiently convert data created by Automatic Differentiation tools to PETSc sparse matrices.
1639ec5066bdSBarry Smith
16401cc06b55SBarry Smith .seealso: [](ch_matrices), [](sec_graph), `MatFDColoringCreate()`, `MatColoringWeightType`, `ISColoring`, `MatFDColoring`, `DMCreateColoring()`, `MatColoringCreate()`,
16412ef1f0ffSBarry Smith `MatPartitioning`, `MatColoringType`, `MatPartitioningType`, `MatOrderingType`, `MatColoringSetWeightType()`,
16422ef1f0ffSBarry Smith `MatColoringSetWeights()`, `MatCoarsenType`, `MatCoarsen`
16437086a01eSPeter Brune S*/
1644d4db15c4SBarry Smith typedef struct _p_MatColoring *MatColoring;
1645d4db15c4SBarry Smith
1646d4db15c4SBarry Smith /*J
1647d4db15c4SBarry Smith MatColoringType - String with the name of a PETSc matrix coloring
1648d9274352SBarry Smith
1649d9274352SBarry Smith Level: beginner
1650d9274352SBarry Smith
16511cc06b55SBarry Smith .seealso: [](ch_matrices), [](sec_graph), `Mat`, `MatFDColoringCreate()`, `MatColoringSetType()`, `MatColoring`
165276bdecfbSBarry Smith J*/
165319fd82e9SBarry Smith typedef const char *MatColoringType;
16545567d71aSPeter Brune #define MATCOLORINGJP "jp"
1655b9acb617SPeter Brune #define MATCOLORINGPOWER "power"
16562692d6eeSBarry Smith #define MATCOLORINGNATURAL "natural"
16572692d6eeSBarry Smith #define MATCOLORINGSL "sl"
16582692d6eeSBarry Smith #define MATCOLORINGLF "lf"
16592692d6eeSBarry Smith #define MATCOLORINGID "id"
16608121bdceSPeter Brune #define MATCOLORINGGREEDY "greedy"
1661b12f92e5SBarry Smith
16628ac6da0aSPeter Brune /*E
16632ef1f0ffSBarry Smith MatColoringWeightType - Type of weight scheme used for the coloring algorithm
16648ac6da0aSPeter Brune
16652ef1f0ffSBarry Smith Values:
166687497f52SBarry Smith + `MAT_COLORING_RANDOM` - Random weights
166787497f52SBarry Smith . `MAT_COLORING_LEXICAL` - Lexical weighting based upon global numbering.
166887497f52SBarry Smith - `MAT_COLORING_LF` - Last-first weighting.
16698ac6da0aSPeter Brune
16708ac6da0aSPeter Brune Level: intermediate
16718ac6da0aSPeter Brune
16721cc06b55SBarry Smith .seealso: [](ch_matrices), `MatColoring`, `MatColoringCreate()`, `MatColoringSetWeightType()`, `MatColoringSetWeights()`
16738ac6da0aSPeter Brune E*/
16749371c9d4SSatish Balay typedef enum {
16759371c9d4SSatish Balay MAT_COLORING_WEIGHT_RANDOM,
16769371c9d4SSatish Balay MAT_COLORING_WEIGHT_LEXICAL,
16779371c9d4SSatish Balay MAT_COLORING_WEIGHT_LF,
16789371c9d4SSatish Balay MAT_COLORING_WEIGHT_SL
16799371c9d4SSatish Balay } MatColoringWeightType;
16808ac6da0aSPeter Brune
1681335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringCreate(Mat, MatColoring *);
1682d7f2a307SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringGetDegrees(Mat, PetscInt, PetscInt *);
1683335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringDestroy(MatColoring *);
1684335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringView(MatColoring, PetscViewer);
1685335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringSetType(MatColoring, MatColoringType);
1686335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringSetFromOptions(MatColoring);
1687335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringSetDistance(MatColoring, PetscInt);
1688335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringGetDistance(MatColoring, PetscInt *);
1689335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringSetMaxColors(MatColoring, PetscInt);
1690335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringGetMaxColors(MatColoring, PetscInt *);
1691335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringApply(MatColoring, ISColoring *);
1692335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringRegister(const char[], PetscErrorCode (*)(MatColoring));
1693014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatColoringPatch(Mat, PetscInt, PetscInt, ISColoringValue[], ISColoring *);
16948ac6da0aSPeter Brune PETSC_EXTERN PetscErrorCode MatColoringSetWeightType(MatColoring, MatColoringWeightType);
1695c29971fcSPeter Brune PETSC_EXTERN PetscErrorCode MatColoringSetWeights(MatColoring, PetscReal *, PetscInt *);
16968ac6da0aSPeter Brune PETSC_EXTERN PetscErrorCode MatColoringCreateWeights(MatColoring, PetscReal **, PetscInt **lperm);
1697bc76d17bSHong Zhang PETSC_EXTERN PetscErrorCode MatColoringTest(MatColoring, ISColoring);
MatColoringTestValid(MatColoring matcoloring,ISColoring iscoloring)1698edd03b47SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION(3, 10, 0, "MatColoringTest()", ) static inline PetscErrorCode MatColoringTestValid(MatColoring matcoloring, ISColoring iscoloring)
1699d71ae5a4SJacob Faibussowitsch {
17009371c9d4SSatish Balay return MatColoringTest(matcoloring, iscoloring);
17019371c9d4SSatish Balay }
1702bc76d17bSHong Zhang PETSC_EXTERN PetscErrorCode MatISColoringTest(Mat, ISColoring);
1703639f9d9dSBarry Smith
1704d9274352SBarry Smith /*S
170587497f52SBarry Smith MatFDColoring - Object for computing a sparse Jacobian via finite differences with coloring
1706639f9d9dSBarry Smith
1707d9274352SBarry Smith Level: beginner
1708d9274352SBarry Smith
17092ba42892SBarry Smith Options Database Key:
17102ba42892SBarry Smith . -snes_fd_coloring - cause the Jacobian needed by `SNES` to be computed via a use of this object
1711ec5066bdSBarry Smith
17122ba42892SBarry Smith Note:
17132ba42892SBarry Smith This object is created utilizing a coloring provided by the `MatColoring` object or `DMCreateColoring()`
17142ef1f0ffSBarry Smith
17151cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatFDColoringCreate()`, `MatFDColoringSetFunction()`, `MatColoring`, `DMCreateColoring()`
1716d9274352SBarry Smith S*/
1717e2a1c21fSSatish Balay typedef struct _p_MatFDColoring *MatFDColoring;
1718639f9d9dSBarry Smith
17192ba42892SBarry Smith /*S
17202ba42892SBarry Smith MatFDColoringFn - Function provided to `MatFDColoringSetFunction()` that computes the function being differenced
17212ba42892SBarry Smith
17222ba42892SBarry Smith Level: advanced
17232ba42892SBarry Smith
17242ba42892SBarry Smith Calling Sequence:
17252ba42892SBarry Smith + snes - either a `SNES` object if used within `SNES` otherwise an unused parameter
17262ba42892SBarry Smith . in - the location where the Jacobian is to be computed
17272ba42892SBarry Smith . out - the location to put the computed function value
17282ba42892SBarry Smith - fctx - the function context passed into `MatFDColoringSetFunction()`
17292ba42892SBarry Smith
17302ba42892SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatCreateMFFD()`, `MatMFFDSetFunction()`, `MatMFFDiFn`, `MatMFFDiBaseFn`
17312ba42892SBarry Smith S*/
1732348d23efSPierre Jolivet PETSC_EXTERN_TYPEDEF typedef PetscErrorCode MatFDColoringFn(void *snes, Vec x, Vec y, void *fctx);
17332ba42892SBarry Smith
1734014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFDColoringCreate(Mat, ISColoring, MatFDColoring *);
1735014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFDColoringDestroy(MatFDColoring *);
1736014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFDColoringView(MatFDColoring, PetscViewer);
17372ba42892SBarry Smith PETSC_EXTERN PetscErrorCode MatFDColoringSetFunction(MatFDColoring, MatFDColoringFn *, void *);
17382ba42892SBarry Smith PETSC_EXTERN PetscErrorCode MatFDColoringGetFunction(MatFDColoring, MatFDColoringFn **, void **);
1739014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFDColoringSetParameters(MatFDColoring, PetscReal, PetscReal);
1740014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFDColoringSetFromOptions(MatFDColoring);
1741d1e9a80fSBarry Smith PETSC_EXTERN PetscErrorCode MatFDColoringApply(Mat, MatFDColoring, Vec, void *);
1742014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFDColoringSetF(MatFDColoring, Vec);
1743edaa7c33SBarry Smith PETSC_EXTERN PetscErrorCode MatFDColoringGetPerturbedColumns(MatFDColoring, PetscInt *, const PetscInt *[]);
1744f86b9fbaSHong Zhang PETSC_EXTERN PetscErrorCode MatFDColoringSetUp(Mat, ISColoring, MatFDColoring);
1745f86b9fbaSHong Zhang PETSC_EXTERN PetscErrorCode MatFDColoringSetBlockSize(MatFDColoring, PetscInt, PetscInt);
1746bdaf1daeSBarry Smith PETSC_EXTERN PetscErrorCode MatFDColoringSetValues(Mat, MatFDColoring, const PetscScalar *);
1747b1683b59SHong Zhang
1748b1683b59SHong Zhang /*S
1749af27ebaaSBarry Smith MatTransposeColoring - Object for computing a sparse matrix product $C = A*B^T$ via coloring
1750b1683b59SHong Zhang
17512ef1f0ffSBarry Smith Level: developer
1752b1683b59SHong Zhang
17531cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatProductType`, `MatTransposeColoringCreate()`
1754b1683b59SHong Zhang S*/
1755b9af6bddSHong Zhang typedef struct _p_MatTransposeColoring *MatTransposeColoring;
1756b1683b59SHong Zhang
1757014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatTransposeColoringCreate(Mat, ISColoring, MatTransposeColoring *);
1758014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatTransColoringApplySpToDen(MatTransposeColoring, Mat, Mat);
1759014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatTransColoringApplyDenToSp(MatTransposeColoring, Mat, Mat);
1760014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatTransposeColoringDestroy(MatTransposeColoring *);
1761b1683b59SHong Zhang
1762d9274352SBarry Smith /*S
1763d9274352SBarry Smith MatPartitioning - Object for managing the partitioning of a matrix or graph
1764d9274352SBarry Smith
1765d9274352SBarry Smith Level: beginner
1766d9274352SBarry Smith
176787497f52SBarry Smith Note:
176887497f52SBarry Smith There is also a `PetscPartitioner` object that provides the same functionality. It can utilize the `MatPartitioning` operations
176987497f52SBarry Smith via `PetscPartitionerSetType`(p,`PETSCPARTITIONERMATPARTITIONING`)
1770ec5066bdSBarry Smith
1771b5e6e808SPierre Jolivet Developer Note:
17722ef1f0ffSBarry Smith It is an extra maintenance and documentation cost to have two objects with the same functionality. `PetscPartitioner` should be removed
1773ec5066bdSBarry Smith
17741cc06b55SBarry Smith .seealso: [](ch_matrices), [](sec_graph), `Mat`, `MatPartitioningCreate()`, `MatPartitioningType`, `MatColoring`, `MatGetOrdering()`, `MatOrderingType`,
17752ef1f0ffSBarry Smith `MatCoarsenType`, `MatCoarsenType`
1776d9274352SBarry Smith S*/
177791e9ee9fSBarry Smith typedef struct _p_MatPartitioning *MatPartitioning;
1778d9274352SBarry Smith
177976bdecfbSBarry Smith /*J
17808f6c3df8SBarry Smith MatPartitioningType - String with the name of a PETSc matrix partitioning
1781d9274352SBarry Smith
1782d9274352SBarry Smith Level: beginner
17830d04baf8SBarry Smith dm
17841cc06b55SBarry Smith .seealso: [](ch_matrices), [](sec_graph), `Mat`, `MatPartitioningCreate()`, `MatPartitioning`, `MatPartitioningSetType()`, `MatColoringType`, `MatOrderingType`,
17852ef1f0ffSBarry Smith `MatCoarsenType`, `MatCoarsenType`
178676bdecfbSBarry Smith J*/
178719fd82e9SBarry Smith typedef const char *MatPartitioningType;
17882692d6eeSBarry Smith #define MATPARTITIONINGCURRENT "current"
1789aa1e27eaSFande Kong #define MATPARTITIONINGAVERAGE "average"
17902692d6eeSBarry Smith #define MATPARTITIONINGSQUARE "square"
17912692d6eeSBarry Smith #define MATPARTITIONINGPARMETIS "parmetis"
17922692d6eeSBarry Smith #define MATPARTITIONINGCHACO "chaco"
17932692d6eeSBarry Smith #define MATPARTITIONINGPARTY "party"
179450d91057SBarry Smith #define MATPARTITIONINGPTSCOTCH "ptscotch"
179588d2ac2bSFande Kong #define MATPARTITIONINGHIERARCH "hierarch"
179671306c60Sjroman
1797014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningCreate(MPI_Comm, MatPartitioning *);
179819fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode MatPartitioningSetType(MatPartitioning, MatPartitioningType);
1799014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningSetNParts(MatPartitioning, PetscInt);
1800014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningSetAdjacency(MatPartitioning, Mat);
1801252a1336SBarry Smith PETSC_EXTERN PetscErrorCode MatPartitioningSetNumberVertexWeights(MatPartitioning, PetscInt);
1802014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningSetVertexWeights(MatPartitioning, const PetscInt[]);
1803014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningSetPartitionWeights(MatPartitioning, const PetscReal[]);
1804ebf67979SFande Kong PETSC_EXTERN PetscErrorCode MatPartitioningSetUseEdgeWeights(MatPartitioning, PetscBool);
1805ebf67979SFande Kong PETSC_EXTERN PetscErrorCode MatPartitioningGetUseEdgeWeights(MatPartitioning, PetscBool *);
1806014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningApply(MatPartitioning, IS *);
1807fdd1c351SFande Kong PETSC_EXTERN PetscErrorCode MatPartitioningImprove(MatPartitioning, IS *);
1808668144dbSFande Kong PETSC_EXTERN PetscErrorCode MatPartitioningViewImbalance(MatPartitioning, IS);
1809f3ad2dabSStefano Zampini PETSC_EXTERN PetscErrorCode MatPartitioningApplyND(MatPartitioning, IS *);
1810014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningDestroy(MatPartitioning *);
1811bdf89e91SBarry Smith PETSC_EXTERN PetscErrorCode MatPartitioningRegister(const char[], PetscErrorCode (*)(MatPartitioning));
1812014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningView(MatPartitioning, PetscViewer);
1813fe2efc57SMark PETSC_EXTERN PetscErrorCode MatPartitioningViewFromOptions(MatPartitioning, PetscObject, const char[]);
1814014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningSetFromOptions(MatPartitioning);
181519fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode MatPartitioningGetType(MatPartitioning, MatPartitioningType *);
1816ca161407SBarry Smith
1817ce78bad3SBarry Smith PETSC_EXTERN PetscErrorCode MatPartitioningParmetisSetRepartition(MatPartitioning);
1818014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningParmetisSetCoarseSequential(MatPartitioning);
1819014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningParmetisGetEdgeCut(MatPartitioning, PetscInt *);
18200752156aSBarry Smith
18219371c9d4SSatish Balay typedef enum {
18229371c9d4SSatish Balay MP_CHACO_MULTILEVEL = 1,
18239371c9d4SSatish Balay MP_CHACO_SPECTRAL = 2,
18249371c9d4SSatish Balay MP_CHACO_LINEAR = 4,
18259371c9d4SSatish Balay MP_CHACO_RANDOM = 5,
18269371c9d4SSatish Balay MP_CHACO_SCATTERED = 6
18279371c9d4SSatish Balay } MPChacoGlobalType;
18286a6fc655SJed Brown PETSC_EXTERN const char *const MPChacoGlobalTypes[];
18299371c9d4SSatish Balay typedef enum {
18309371c9d4SSatish Balay MP_CHACO_KERNIGHAN = 1,
18319371c9d4SSatish Balay MP_CHACO_NONE = 2
18329371c9d4SSatish Balay } MPChacoLocalType;
18336a6fc655SJed Brown PETSC_EXTERN const char *const MPChacoLocalTypes[];
18349371c9d4SSatish Balay typedef enum {
18359371c9d4SSatish Balay MP_CHACO_LANCZOS = 0,
18369371c9d4SSatish Balay MP_CHACO_RQI = 1
18379371c9d4SSatish Balay } MPChacoEigenType;
18386a6fc655SJed Brown PETSC_EXTERN const char *const MPChacoEigenTypes[];
1839b6956c12SJose Roman
1840014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoSetGlobal(MatPartitioning, MPChacoGlobalType);
1841014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoGetGlobal(MatPartitioning, MPChacoGlobalType *);
1842014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoSetLocal(MatPartitioning, MPChacoLocalType);
1843014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoGetLocal(MatPartitioning, MPChacoLocalType *);
1844014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoSetCoarseLevel(MatPartitioning, PetscReal);
1845014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoSetEigenSolver(MatPartitioning, MPChacoEigenType);
1846014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoGetEigenSolver(MatPartitioning, MPChacoEigenType *);
1847014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoSetEigenTol(MatPartitioning, PetscReal);
1848014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoGetEigenTol(MatPartitioning, PetscReal *);
1849014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoSetEigenNumber(MatPartitioning, PetscInt);
1850014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoGetEigenNumber(MatPartitioning, PetscInt *);
185171306c60Sjroman
185271306c60Sjroman #define MP_PARTY_OPT "opt"
185371306c60Sjroman #define MP_PARTY_LIN "lin"
185471306c60Sjroman #define MP_PARTY_SCA "sca"
185571306c60Sjroman #define MP_PARTY_RAN "ran"
185671306c60Sjroman #define MP_PARTY_GBF "gbf"
185771306c60Sjroman #define MP_PARTY_GCF "gcf"
185871306c60Sjroman #define MP_PARTY_BUB "bub"
185971306c60Sjroman #define MP_PARTY_DEF "def"
1860014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningPartySetGlobal(MatPartitioning, const char *);
186171306c60Sjroman #define MP_PARTY_HELPFUL_SETS "hs"
186271306c60Sjroman #define MP_PARTY_KERNIGHAN_LIN "kl"
186371306c60Sjroman #define MP_PARTY_NONE "no"
1864014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningPartySetLocal(MatPartitioning, const char *);
1865014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningPartySetCoarseLevel(MatPartitioning, PetscReal);
1866014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningPartySetBipart(MatPartitioning, PetscBool);
1867014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningPartySetMatchOptimization(MatPartitioning, PetscBool);
186871306c60Sjroman
18699371c9d4SSatish Balay typedef enum {
18709371c9d4SSatish Balay MP_PTSCOTCH_DEFAULT,
18719371c9d4SSatish Balay MP_PTSCOTCH_QUALITY,
18729371c9d4SSatish Balay MP_PTSCOTCH_SPEED,
18739371c9d4SSatish Balay MP_PTSCOTCH_BALANCE,
18749371c9d4SSatish Balay MP_PTSCOTCH_SAFETY,
18759371c9d4SSatish Balay MP_PTSCOTCH_SCALABILITY
18769371c9d4SSatish Balay } MPPTScotchStrategyType;
18776a6fc655SJed Brown PETSC_EXTERN const char *const MPPTScotchStrategyTypes[];
1878e0f1cffaSJose Roman
1879014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningPTScotchSetImbalance(MatPartitioning, PetscReal);
1880014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningPTScotchGetImbalance(MatPartitioning, PetscReal *);
1881014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningPTScotchSetStrategy(MatPartitioning, MPPTScotchStrategyType);
1882014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningPTScotchGetStrategy(MatPartitioning, MPPTScotchStrategyType *);
188371306c60Sjroman
1884b43b03e9SMark F. Adams /*
18856294fa2bSFande Kong * hierarchical partitioning
18866294fa2bSFande Kong */
18874e713f55SFande Kong PETSC_EXTERN PetscErrorCode MatPartitioningHierarchicalGetFineparts(MatPartitioning, IS *);
18884e713f55SFande Kong PETSC_EXTERN PetscErrorCode MatPartitioningHierarchicalGetCoarseparts(MatPartitioning, IS *);
18894e713f55SFande Kong PETSC_EXTERN PetscErrorCode MatPartitioningHierarchicalSetNcoarseparts(MatPartitioning, PetscInt);
18904e713f55SFande Kong PETSC_EXTERN PetscErrorCode MatPartitioningHierarchicalSetNfineparts(MatPartitioning, PetscInt);
18916294fa2bSFande Kong
1892014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMeshToCellGraph(Mat, PetscInt, Mat *);
1893591294e4SBarry Smith
18940752156aSBarry Smith /*
18958bb0f5c6SPierre Jolivet If any of the enum values are changed, also update dMatOps dict at src/binding/petsc4py/src/petsc4py/PETSc/libpetsc4py.pyx
1896d4fbbf0eSBarry Smith */
18979371c9d4SSatish Balay typedef enum {
18989371c9d4SSatish Balay MATOP_SET_VALUES = 0,
18991c1c02c0SLois Curfman McInnes MATOP_GET_ROW = 1,
19001c1c02c0SLois Curfman McInnes MATOP_RESTORE_ROW = 2,
19011c1c02c0SLois Curfman McInnes MATOP_MULT = 3,
19021c1c02c0SLois Curfman McInnes MATOP_MULT_ADD = 4,
19037c922b88SBarry Smith MATOP_MULT_TRANSPOSE = 5,
19047c922b88SBarry Smith MATOP_MULT_TRANSPOSE_ADD = 6,
19051c1c02c0SLois Curfman McInnes MATOP_SOLVE = 7,
19061c1c02c0SLois Curfman McInnes MATOP_SOLVE_ADD = 8,
19077c922b88SBarry Smith MATOP_SOLVE_TRANSPOSE = 9,
19087c922b88SBarry Smith MATOP_SOLVE_TRANSPOSE_ADD = 10,
19091c1c02c0SLois Curfman McInnes MATOP_LUFACTOR = 11,
19101c1c02c0SLois Curfman McInnes MATOP_CHOLESKYFACTOR = 12,
1911a714c06dSBarry Smith MATOP_SOR = 13,
19121c1c02c0SLois Curfman McInnes MATOP_TRANSPOSE = 14,
19131c1c02c0SLois Curfman McInnes MATOP_GETINFO = 15,
19141c1c02c0SLois Curfman McInnes MATOP_EQUAL = 16,
19151c1c02c0SLois Curfman McInnes MATOP_GET_DIAGONAL = 17,
19161c1c02c0SLois Curfman McInnes MATOP_DIAGONAL_SCALE = 18,
19171c1c02c0SLois Curfman McInnes MATOP_NORM = 19,
19181c1c02c0SLois Curfman McInnes MATOP_ASSEMBLY_BEGIN = 20,
19191c1c02c0SLois Curfman McInnes MATOP_ASSEMBLY_END = 21,
1920d519adbfSMatthew Knepley MATOP_SET_OPTION = 22,
1921d519adbfSMatthew Knepley MATOP_ZERO_ENTRIES = 23,
1922d519adbfSMatthew Knepley MATOP_ZERO_ROWS = 24,
1923d519adbfSMatthew Knepley MATOP_LUFACTOR_SYMBOLIC = 25,
1924d519adbfSMatthew Knepley MATOP_LUFACTOR_NUMERIC = 26,
1925d519adbfSMatthew Knepley MATOP_CHOLESKY_FACTOR_SYMBOLIC = 27,
1926d519adbfSMatthew Knepley MATOP_CHOLESKY_FACTOR_NUMERIC = 28,
1927e5f2d425SStefano Zampini MATOP_SETUP = 29,
1928d519adbfSMatthew Knepley MATOP_ILUFACTOR_SYMBOLIC = 30,
1929d519adbfSMatthew Knepley MATOP_ICCFACTOR_SYMBOLIC = 31,
1930a5b7ff6bSBarry Smith MATOP_GET_DIAGONAL_BLOCK = 32,
1931e5f2d425SStefano Zampini MATOP_SET_INF = 33,
1932d519adbfSMatthew Knepley MATOP_DUPLICATE = 34,
1933d519adbfSMatthew Knepley MATOP_FORWARD_SOLVE = 35,
1934d519adbfSMatthew Knepley MATOP_BACKWARD_SOLVE = 36,
1935d519adbfSMatthew Knepley MATOP_ILUFACTOR = 37,
1936d519adbfSMatthew Knepley MATOP_ICCFACTOR = 38,
1937d519adbfSMatthew Knepley MATOP_AXPY = 39,
19387dae84e0SHong Zhang MATOP_CREATE_SUBMATRICES = 40,
1939d519adbfSMatthew Knepley MATOP_INCREASE_OVERLAP = 41,
1940d519adbfSMatthew Knepley MATOP_GET_VALUES = 42,
1941d519adbfSMatthew Knepley MATOP_COPY = 43,
1942d519adbfSMatthew Knepley MATOP_GET_ROW_MAX = 44,
1943d519adbfSMatthew Knepley MATOP_SCALE = 45,
1944d519adbfSMatthew Knepley MATOP_SHIFT = 46,
194535153367SBarry Smith MATOP_DIAGONAL_SET = 47,
19469d39f69dSJed Brown MATOP_ZERO_ROWS_COLUMNS = 48,
19479d39f69dSJed Brown MATOP_SET_RANDOM = 49,
1948d519adbfSMatthew Knepley MATOP_GET_ROW_IJ = 50,
1949d519adbfSMatthew Knepley MATOP_RESTORE_ROW_IJ = 51,
1950d519adbfSMatthew Knepley MATOP_GET_COLUMN_IJ = 52,
1951d519adbfSMatthew Knepley MATOP_RESTORE_COLUMN_IJ = 53,
1952d519adbfSMatthew Knepley MATOP_FDCOLORING_CREATE = 54,
1953d519adbfSMatthew Knepley MATOP_COLORING_PATCH = 55,
1954d519adbfSMatthew Knepley MATOP_SET_UNFACTORED = 56,
1955d519adbfSMatthew Knepley MATOP_PERMUTE = 57,
1956d519adbfSMatthew Knepley MATOP_SET_VALUES_BLOCKED = 58,
19577dae84e0SHong Zhang MATOP_CREATE_SUBMATRIX = 59,
1958d519adbfSMatthew Knepley MATOP_DESTROY = 60,
1959d519adbfSMatthew Knepley MATOP_VIEW = 61,
1960d519adbfSMatthew Knepley MATOP_CONVERT_FROM = 62,
19618bb0f5c6SPierre Jolivet MATOP_MATMAT_MULT_SYMBOLIC = 63,
19628bb0f5c6SPierre Jolivet MATOP_MATMAT_MULT_NUMERIC = 64,
19638bb0f5c6SPierre Jolivet MATOP_SET_LOCAL_TO_GLOBAL_MAP = 65,
19648bb0f5c6SPierre Jolivet MATOP_SET_VALUES_LOCAL = 66,
19658bb0f5c6SPierre Jolivet MATOP_ZERO_ROWS_LOCAL = 67,
19668bb0f5c6SPierre Jolivet MATOP_GET_ROW_MAX_ABS = 68,
19678bb0f5c6SPierre Jolivet MATOP_GET_ROW_MIN_ABS = 69,
19688bb0f5c6SPierre Jolivet MATOP_CONVERT = 70,
19698bb0f5c6SPierre Jolivet MATOP_HAS_OPERATION = 71,
19708bb0f5c6SPierre Jolivet MATOP_FD_COLORING_APPLY = 72,
19718bb0f5c6SPierre Jolivet MATOP_SET_FROM_OPTIONS = 73,
19728bb0f5c6SPierre Jolivet MATOP_FIND_ZERO_DIAGONALS = 74,
19738bb0f5c6SPierre Jolivet MATOP_MULT_MULTIPLE = 75,
19748bb0f5c6SPierre Jolivet MATOP_SOLVE_MULTIPLE = 76,
19758bb0f5c6SPierre Jolivet MATOP_GET_INERTIA = 77,
19768bb0f5c6SPierre Jolivet MATOP_LOAD = 78,
19778bb0f5c6SPierre Jolivet MATOP_IS_SYMMETRIC = 79,
19788bb0f5c6SPierre Jolivet MATOP_IS_HERMITIAN = 80,
19798bb0f5c6SPierre Jolivet MATOP_IS_STRUCTURALLY_SYMMETRIC = 81,
19808bb0f5c6SPierre Jolivet MATOP_SET_VALUES_BLOCKEDLOCAL = 82,
19818bb0f5c6SPierre Jolivet MATOP_CREATE_VECS = 83,
19828bb0f5c6SPierre Jolivet MATOP_MAT_MULT_SYMBOLIC = 84,
19838bb0f5c6SPierre Jolivet MATOP_MAT_MULT_NUMERIC = 85,
19848bb0f5c6SPierre Jolivet MATOP_PTAP_NUMERIC = 86,
19858bb0f5c6SPierre Jolivet MATOP_MAT_TRANSPOSE_MULT_SYMBO = 87,
19868bb0f5c6SPierre Jolivet MATOP_MAT_TRANSPOSE_MULT_NUMER = 88,
19878bb0f5c6SPierre Jolivet MATOP_BIND_TO_CPU = 89,
19888bb0f5c6SPierre Jolivet MATOP_PRODUCTSETFROMOPTIONS = 90,
19898bb0f5c6SPierre Jolivet MATOP_PRODUCTSYMBOLIC = 91,
19908bb0f5c6SPierre Jolivet MATOP_PRODUCTNUMERIC = 92,
19918bb0f5c6SPierre Jolivet MATOP_CONJUGATE = 93,
19928bb0f5c6SPierre Jolivet MATOP_VIEW_NATIVE = 94,
19938bb0f5c6SPierre Jolivet MATOP_SET_VALUES_ROW = 95,
19948bb0f5c6SPierre Jolivet MATOP_REAL_PART = 96,
19958bb0f5c6SPierre Jolivet MATOP_IMAGINARY_PART = 97,
19968bb0f5c6SPierre Jolivet MATOP_GET_ROW_UPPER_TRIANGULAR = 98,
19978bb0f5c6SPierre Jolivet MATOP_RESTORE_ROW_UPPER_TRIANG = 99,
19988bb0f5c6SPierre Jolivet MATOP_MAT_SOLVE = 100,
19998bb0f5c6SPierre Jolivet MATOP_MAT_SOLVE_TRANSPOSE = 101,
20008bb0f5c6SPierre Jolivet MATOP_GET_ROW_MIN = 102,
20018bb0f5c6SPierre Jolivet MATOP_GET_COLUMN_VECTOR = 103,
2002421480d9SBarry Smith MATOP_GET_SEQ_NONZERO_STRUCTUR = 104,
2003421480d9SBarry Smith MATOP_CREATE = 105,
2004421480d9SBarry Smith MATOP_GET_GHOSTS = 106,
2005421480d9SBarry Smith MATOP_GET_LOCAL_SUB_MATRIX = 107,
2006421480d9SBarry Smith MATOP_RESTORE_LOCALSUB_MATRIX = 108,
2007421480d9SBarry Smith MATOP_MULT_DIAGONAL_BLOCK = 109,
2008421480d9SBarry Smith MATOP_HERMITIAN_TRANSPOSE = 110,
2009421480d9SBarry Smith MATOP_MULT_HERMITIAN_TRANSPOSE = 111,
2010421480d9SBarry Smith MATOP_MULT_HERMITIAN_TRANS_ADD = 112,
2011421480d9SBarry Smith MATOP_GET_MULTI_PROC_BLOCK = 113,
2012421480d9SBarry Smith MATOP_FIND_NONZERO_ROWS = 114,
2013421480d9SBarry Smith MATOP_GET_COLUMN_NORMS = 115,
2014421480d9SBarry Smith MATOP_INVERT_BLOCK_DIAGONAL = 116,
2015421480d9SBarry Smith MATOP_INVERT_VBLOCK_DIAGONAL = 117,
2016421480d9SBarry Smith MATOP_CREATE_SUB_MATRICES_MPI = 118,
2017421480d9SBarry Smith MATOP_SET_VALUES_BATCH = 119,
2018421480d9SBarry Smith MATOP_TRANSPOSE_MAT_MULT_SYMBO = 120,
2019421480d9SBarry Smith MATOP_TRANSPOSE_MAT_MULT_NUMER = 121,
2020421480d9SBarry Smith MATOP_TRANSPOSE_COLORING_CREAT = 122,
2021421480d9SBarry Smith MATOP_TRANS_COLORING_APPLY_SPT = 123,
2022421480d9SBarry Smith MATOP_TRANS_COLORING_APPLY_DEN = 124,
2023421480d9SBarry Smith MATOP_RART_NUMERIC = 125,
2024421480d9SBarry Smith MATOP_SET_BLOCK_SIZES = 126,
2025421480d9SBarry Smith MATOP_RESIDUAL = 127,
2026421480d9SBarry Smith MATOP_FDCOLORING_SETUP = 128,
2027421480d9SBarry Smith MATOP_FIND_OFFBLOCK_ENTRIES = 129,
2028421480d9SBarry Smith MATOP_MPICONCATENATESEQ = 130,
2029421480d9SBarry Smith MATOP_DESTROYSUBMATRICES = 131,
2030421480d9SBarry Smith MATOP_MAT_TRANSPOSE_SOLVE = 132,
2031421480d9SBarry Smith MATOP_GET_VALUES_LOCAL = 133,
2032421480d9SBarry Smith MATOP_CREATE_GRAPH = 134,
2033421480d9SBarry Smith MATOP_TRANSPOSE_SYMBOLIC = 135,
2034421480d9SBarry Smith MATOP_ELIMINATE_ZEROS = 136,
2035421480d9SBarry Smith MATOP_GET_ROW_SUM_ABS = 137,
2036421480d9SBarry Smith MATOP_GET_FACTOR = 138,
2037421480d9SBarry Smith MATOP_GET_BLOCK_DIAGONAL = 139, /* NOTE: caller of the two op functions owns the returned matrix */
2038421480d9SBarry Smith MATOP_GET_VBLOCK_DIAGONAL = 140, /* and need to destroy it after use. */
2039421480d9SBarry Smith MATOP_COPY_HASH_TO_XAIJ = 141,
2040421480d9SBarry Smith MATOP_GET_CURRENT_MEM_TYPE = 142,
2041421480d9SBarry Smith MATOP_ZERO_ROWS_COLUMNS_LOCAL = 143
2042fae171e0SBarry Smith } MatOperation;
2043c2be7ffeSStefano Zampini
204457d50842SBarry Smith PETSC_EXTERN PetscErrorCode MatSetOperation(Mat, MatOperation, PetscErrorCodeFn *);
204557d50842SBarry Smith PETSC_EXTERN PetscErrorCode MatGetOperation(Mat, MatOperation, PetscErrorCodeFn **);
2046976e8c5aSLisandro Dalcin PETSC_EXTERN PetscErrorCode MatHasOperation(Mat, MatOperation, PetscBool *);
204794342113SStefano Zampini PETSC_EXTERN PetscErrorCode MatHasCongruentLayouts(Mat, PetscBool *);
MatFreeIntermediateDataStructures(Mat A)2048edd03b47SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION(3, 14, 0, "MatProductClear()", ) static inline PetscErrorCode MatFreeIntermediateDataStructures(Mat A)
2049d71ae5a4SJacob Faibussowitsch {
20509371c9d4SSatish Balay return MatProductClear(A);
20519371c9d4SSatish Balay }
205257d50842SBarry Smith PETSC_EXTERN PetscErrorCode MatShellSetOperation(Mat, MatOperation, PetscErrorCodeFn *);
205357d50842SBarry Smith PETSC_EXTERN PetscErrorCode MatShellGetOperation(Mat, MatOperation, PetscErrorCodeFn **);
20542a8381b2SBarry Smith PETSC_EXTERN PetscErrorCode MatShellSetContext(Mat, PetscCtx);
2055d1319cabSBarry Smith PETSC_EXTERN PetscErrorCode MatShellSetContextDestroy(Mat, PetscCtxDestroyFn *);
2056db77db73SJeremy L Thompson PETSC_EXTERN PetscErrorCode MatShellSetVecType(Mat, VecType);
2057f3b1f45cSBarry Smith PETSC_EXTERN PetscErrorCode MatShellTestMult(Mat, PetscErrorCode (*)(void *, Vec, Vec), Vec, void *, PetscBool *);
2058f3b1f45cSBarry Smith PETSC_EXTERN PetscErrorCode MatShellTestMultTranspose(Mat, PetscErrorCode (*)(void *, Vec, Vec), Vec, void *, PetscBool *);
20590c0fd78eSBarry Smith PETSC_EXTERN PetscErrorCode MatShellSetManageScalingShifts(Mat);
2060cc1eb50dSBarry Smith PETSC_EXTERN PetscErrorCode MatShellSetMatProductOperation(Mat, MatProductType, PetscErrorCode (*)(Mat, Mat, Mat, void **), PetscErrorCode (*)(Mat, Mat, Mat, void *), PetscCtxDestroyFn *, MatType, MatType);
2061b77ba244SStefano Zampini PETSC_EXTERN PetscErrorCode MatIsShell(Mat, PetscBool *);
2062112a2221SBarry Smith
206390ace30eSBarry Smith /*
206490ace30eSBarry Smith Codes for matrices stored on disk. By default they are
206590ace30eSBarry Smith stored in a universal format. By changing the format with
20666a9046bcSBarry Smith PetscViewerPushFormat(viewer,PETSC_VIEWER_NATIVE); the matrices will
206790ace30eSBarry Smith be stored in a way natural for the matrix, for example dense matrices
206890ace30eSBarry Smith would be stored as dense. Matrices stored this way may only be
2069f4403165SShri Abhyankar read into matrices of the same type.
207090ace30eSBarry Smith */
207190ace30eSBarry Smith #define MATRIX_BINARY_FORMAT_DENSE -1
207290ace30eSBarry Smith
2073014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIBAIJSetHashTableFactor(Mat, PetscReal);
207475d48cdbSStefano Zampini
20758546b261SStefano Zampini PETSC_EXTERN PetscErrorCode MatISSetLocalMatType(Mat, MatType);
207675d48cdbSStefano Zampini PETSC_EXTERN PetscErrorCode MatISSetPreallocation(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[]);
20774f58015eSStefano Zampini PETSC_EXTERN PetscErrorCode MatISSetAllowRepeated(Mat, PetscBool);
20784f58015eSStefano Zampini PETSC_EXTERN PetscErrorCode MatISGetAllowRepeated(Mat, PetscBool *);
207975d48cdbSStefano Zampini PETSC_EXTERN PetscErrorCode MatISStoreL2L(Mat, PetscBool);
2080f03112d0SStefano Zampini PETSC_EXTERN PetscErrorCode MatISFixLocalEmpty(Mat, PetscBool);
2081014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatISGetLocalMat(Mat, Mat *);
20823b3b1effSJed Brown PETSC_EXTERN PetscErrorCode MatISRestoreLocalMat(Mat, Mat *);
2083014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatISSetLocalMat(Mat, Mat);
2084e432b41dSStefano Zampini PETSC_EXTERN PetscErrorCode MatISGetLocalToGlobalMapping(Mat, ISLocalToGlobalMapping *, ISLocalToGlobalMapping *);
20851f4e1ec7SBarry Smith
2086d9274352SBarry Smith /*S
2087d9274352SBarry Smith MatNullSpace - Object that removes a null space from a vector, i.e.
2088cb6b9846SMatthew Knepley orthogonalizes the vector to a subspace
2089d9274352SBarry Smith
2090f7a9e4ceSBarry Smith Level: advanced
2091d9274352SBarry Smith
20921cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatNullSpaceCreate()`, `MatNullSpaceSetFunction()`, `MatGetNullSpace()`, `MatSetNullSpace()`
2093d9274352SBarry Smith S*/
209474637425SBarry Smith typedef struct _p_MatNullSpace *MatNullSpace;
2095d9274352SBarry Smith
209634731ec5SBarry Smith /*S
209734731ec5SBarry Smith MatNullSpaceRemoveFn - Function provided to `MatNullSpaceSetFunction()` that removes the null space from a vector
209834731ec5SBarry Smith
209934731ec5SBarry Smith Level: advanced
210034731ec5SBarry Smith
210134731ec5SBarry Smith Calling Sequence:
210234731ec5SBarry Smith + nsp - the `MatNullSpace` object
210334731ec5SBarry Smith . x - the vector from which to remove the null space
210434731ec5SBarry Smith - ctx - [optional] user-defined function context provided with `MatNullSpaceSetFunction()`
210534731ec5SBarry Smith
210634731ec5SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatNullSpaceCreate()`, `MatNullSpaceSetFunction()`, `MatGetNullSpace()`, `MatSetNullSpace()`
210734731ec5SBarry Smith S*/
21082a8381b2SBarry Smith PETSC_EXTERN_TYPEDEF typedef PetscErrorCode MatNullSpaceRemoveFn(MatNullSpace nsp, Vec x, PetscCtx ctx);
210934731ec5SBarry Smith
2110014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNullSpaceCreate(MPI_Comm, PetscBool, PetscInt, const Vec[], MatNullSpace *);
211134731ec5SBarry Smith PETSC_EXTERN PetscErrorCode MatNullSpaceSetFunction(MatNullSpace, MatNullSpaceRemoveFn *, void *);
2112014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNullSpaceDestroy(MatNullSpace *);
2113d0195637SJed Brown PETSC_EXTERN PetscErrorCode MatNullSpaceRemove(MatNullSpace, Vec);
2114014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetNullSpace(Mat, MatNullSpace *);
21155fa7ec2dSBarry Smith PETSC_EXTERN PetscErrorCode MatGetTransposeNullSpace(Mat, MatNullSpace *);
21165fa7ec2dSBarry Smith PETSC_EXTERN PetscErrorCode MatSetTransposeNullSpace(Mat, MatNullSpace);
2117014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetNullSpace(Mat, MatNullSpace);
2118014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetNearNullSpace(Mat, MatNullSpace);
2119014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetNearNullSpace(Mat, MatNullSpace *);
21204849c82aSBarry Smith PETSC_EXTERN PetscErrorCode MatGetNullSpaces(PetscInt, Mat[], MatNullSpace *[]);
21214849c82aSBarry Smith PETSC_EXTERN PetscErrorCode MatRestoreNullSpaces(PetscInt, Mat[], MatNullSpace *[]);
2122014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNullSpaceTest(MatNullSpace, Mat, PetscBool *);
2123014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNullSpaceView(MatNullSpace, PetscViewer);
2124014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNullSpaceGetVecs(MatNullSpace, PetscBool *, PetscInt *, const Vec **);
2125014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNullSpaceCreateRigidBody(Vec, MatNullSpace *);
212674637425SBarry Smith
2127014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatReorderingSeqSBAIJ(Mat, IS);
2128014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPISBAIJSetHashTableFactor(Mat, PetscReal);
2129014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSeqSBAIJSetColumnIndices(Mat, PetscInt *);
21303f1d51d7SBarry Smith
2131014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMAIJ(Mat, PetscInt, Mat *);
2132014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMAIJRedimension(Mat, PetscInt, Mat *);
2133014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMAIJGetAIJ(Mat, Mat *);
2134c4f061fbSSatish Balay
21350bacdadaSStefano Zampini PETSC_EXTERN PetscErrorCode MatComputeOperator(Mat, MatType, Mat *);
21360bacdadaSStefano Zampini PETSC_EXTERN PetscErrorCode MatComputeOperatorTranspose(Mat, MatType, Mat *);
21370bacdadaSStefano Zampini
MatComputeExplicitOperator(Mat A,Mat * B)2138edd03b47SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION(3, 12, 0, "MatComputeOperator()", ) static inline PetscErrorCode MatComputeExplicitOperator(Mat A, Mat *B)
2139d71ae5a4SJacob Faibussowitsch {
2140f22e26b7SPierre Jolivet return MatComputeOperator(A, PETSC_NULLPTR, B);
21419371c9d4SSatish Balay }
MatComputeExplicitOperatorTranspose(Mat A,Mat * B)2142edd03b47SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION(3, 12, 0, "MatComputeOperatorTranspose()", ) static inline PetscErrorCode MatComputeExplicitOperatorTranspose(Mat A, Mat *B)
2143d71ae5a4SJacob Faibussowitsch {
2144f22e26b7SPierre Jolivet return MatComputeOperatorTranspose(A, PETSC_NULLPTR, B);
21459371c9d4SSatish Balay }
2146b0a32e0cSBarry Smith
214749bd79ccSDebojyoti Ghosh PETSC_EXTERN PetscErrorCode MatCreateKAIJ(Mat, PetscInt, PetscInt, const PetscScalar[], const PetscScalar[], Mat *);
214849bd79ccSDebojyoti Ghosh PETSC_EXTERN PetscErrorCode MatKAIJGetAIJ(Mat, Mat *);
2149a5b5c723SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJGetS(Mat, PetscInt *, PetscInt *, PetscScalar **);
2150a5b5c723SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJGetSRead(Mat, PetscInt *, PetscInt *, const PetscScalar **);
2151a5b5c723SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJRestoreS(Mat, PetscScalar **);
2152a5b5c723SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJRestoreSRead(Mat, const PetscScalar **);
2153a5b5c723SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJGetT(Mat, PetscInt *, PetscInt *, PetscScalar **);
2154a5b5c723SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJGetTRead(Mat, PetscInt *, PetscInt *, const PetscScalar **);
2155a5b5c723SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJRestoreT(Mat, PetscScalar **);
2156a5b5c723SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJRestoreTRead(Mat, const PetscScalar **);
2157dbb4b592SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJSetAIJ(Mat, Mat);
2158dbb4b592SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJSetS(Mat, PetscInt, PetscInt, const PetscScalar[]);
2159dbb4b592SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJSetT(Mat, PetscInt, PetscInt, const PetscScalar[]);
2160910cf402Sprj- PETSC_EXTERN PetscErrorCode MatKAIJGetScaledIdentity(Mat, PetscBool *);
216149bd79ccSDebojyoti Ghosh
2162014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatDiagonalScaleLocal(Mat, Vec);
216304f1ad80SBarry Smith
21644bf303faSJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatMFFDInitializePackage(void);
21654bf303faSJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatMFFDFinalizePackage(void);
21664bf303faSJacob Faibussowitsch
21674f3e17a8SBarry Smith /*S
21684f3e17a8SBarry Smith MatMFFDFn - Function provided to `MatMFFDSetFunction()` that computes the function being differenced
21694f3e17a8SBarry Smith
21704f3e17a8SBarry Smith Level: advanced
21714f3e17a8SBarry Smith
21724f3e17a8SBarry Smith Calling Sequence:
21734f3e17a8SBarry Smith + ctx - [optional] user-defined function context provided with `MatMFFDSetFunction()`
21744f3e17a8SBarry Smith . x - input vector
21754f3e17a8SBarry Smith - y - output vector
21764f3e17a8SBarry Smith
21774f3e17a8SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatCreateMFFD()`, `MatMFFDSetFunction()`, `MatMFFDiFn`, `MatMFFDiBaseFn`
21784f3e17a8SBarry Smith S*/
21792a8381b2SBarry Smith PETSC_EXTERN_TYPEDEF typedef PetscErrorCode MatMFFDFn(PetscCtx ctx, Vec x, Vec y);
21804f3e17a8SBarry Smith
21814f3e17a8SBarry Smith /*S
21824f3e17a8SBarry Smith MatMFFDiFn - Function provided to `MatMFFDSetFunctioni()` that computes the function being differenced at a single point
21834f3e17a8SBarry Smith
21844f3e17a8SBarry Smith Level: advanced
21854f3e17a8SBarry Smith
21864f3e17a8SBarry Smith Calling Sequence:
21874f3e17a8SBarry Smith + ctx - [optional] user-defined function context provided with `MatMFFDSetFunction()`
21884f3e17a8SBarry Smith . i - the component of the vector to compute
21894f3e17a8SBarry Smith . x - input vector
21904f3e17a8SBarry Smith - result - the value of the function at that component (output)
21914f3e17a8SBarry Smith
21924f3e17a8SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatCreateMFFD()`, `MatMFFDSetFunction()`, `MatMFFDFn`, `MatMFFDiBaseFn`
21934f3e17a8SBarry Smith S*/
21942a8381b2SBarry Smith PETSC_EXTERN_TYPEDEF typedef PetscErrorCode MatMFFDiFn(PetscCtx ctx, PetscInt i, Vec x, PetscScalar *result);
21954f3e17a8SBarry Smith
21964f3e17a8SBarry Smith /*S
21974f3e17a8SBarry Smith MatMFFDiBaseFn - Function provided to `MatMFFDSetFunctioniBase()` that computes the base of the function evaluations
21984f3e17a8SBarry Smith that will be used for differencing
21994f3e17a8SBarry Smith
22004f3e17a8SBarry Smith Level: advanced
22014f3e17a8SBarry Smith
22024f3e17a8SBarry Smith Calling Sequence:
22034f3e17a8SBarry Smith + ctx - [optional] user-defined function context provided with `MatMFFDSetFunction()`
22044f3e17a8SBarry Smith - x - input base vector
22054f3e17a8SBarry Smith
22064f3e17a8SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatCreateMFFD()`, `MatMFFDSetFunction()`, `MatMFFDSetFunctioniBase()`, `MatMFFDFn`, `MatMFFDiFn`
22074f3e17a8SBarry Smith S*/
22082a8381b2SBarry Smith PETSC_EXTERN_TYPEDEF typedef PetscErrorCode MatMFFDiBaseFn(PetscCtx ctx, Vec x);
22094f3e17a8SBarry Smith
22104f3e17a8SBarry Smith /*S
22114f3e17a8SBarry Smith MatMFFDCheckhFn - Function provided to `MatMFFDSetCheckh()` that checks and possibly adjusts the value of `h` to ensure some property.
22124f3e17a8SBarry Smith that will be used for differencing
22134f3e17a8SBarry Smith
22144f3e17a8SBarry Smith Level: advanced
22154f3e17a8SBarry Smith
22164f3e17a8SBarry Smith Calling Sequence:
22174f3e17a8SBarry Smith + ctx - [optional] user-defined function context provided with `MatMFFDSetCheckh()`
22184f3e17a8SBarry Smith . x - input base vector
22194f3e17a8SBarry Smith . y - input step vector that the product is computed with
22204f3e17a8SBarry Smith - h - input tentative step, output possibly adjusted step
22214f3e17a8SBarry Smith
22224f3e17a8SBarry Smith Note:
22234f3e17a8SBarry Smith `MatMFFDCheckPositivity()` is one such function
22244f3e17a8SBarry Smith
22254f3e17a8SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatCreateMFFD()`, `MatMFFDSetCheckh()`, `MatMFFDCheckPositivity()`
22264f3e17a8SBarry Smith S*/
22272a8381b2SBarry Smith PETSC_EXTERN_TYPEDEF typedef PetscErrorCode MatMFFDCheckhFn(PetscCtx ctx, Vec x, Vec y, PetscScalar *h);
22284f3e17a8SBarry Smith
2229014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMFFD(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, Mat *);
2230014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDSetBase(Mat, Vec, Vec);
22314f3e17a8SBarry Smith PETSC_EXTERN PetscErrorCode MatMFFDSetFunction(Mat, MatMFFDFn *, void *);
22324f3e17a8SBarry Smith PETSC_EXTERN PetscErrorCode MatMFFDSetFunctioni(Mat, MatMFFDiFn *);
22334f3e17a8SBarry Smith PETSC_EXTERN PetscErrorCode MatMFFDSetFunctioniBase(Mat, MatMFFDiBaseFn *);
2234014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDSetHHistory(Mat, PetscScalar[], PetscInt);
2235014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDResetHHistory(Mat);
2236014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDSetFunctionError(Mat, PetscReal);
2237014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDSetPeriod(Mat, PetscInt);
2238014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDGetH(Mat, PetscScalar *);
2239014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDSetOptionsPrefix(Mat, const char[]);
2240014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDCheckPositivity(void *, Vec, Vec, PetscScalar *);
22414f3e17a8SBarry Smith PETSC_EXTERN PetscErrorCode MatMFFDSetCheckh(Mat, MatMFFDCheckhFn *, void *);
2242e884886fSBarry Smith
22436370053bSBarry Smith /*S
22446370053bSBarry Smith MatMFFD - A data structured used to manage the computation of the h differencing parameter for matrix-free
22456370053bSBarry Smith Jacobian vector products
2246e884886fSBarry Smith
22472ef1f0ffSBarry Smith Level: developer
22482ef1f0ffSBarry Smith
224995452b02SPatrick Sanan Notes:
225087497f52SBarry Smith `MATMFFD` is a specific `MatType` which uses the `MatMFFD` data structure
22516370053bSBarry Smith
22522ef1f0ffSBarry Smith MatMFFD*() methods actually take the `Mat` as their first argument. Not a `MatMFFD` data structure
22536370053bSBarry Smith
22542ef1f0ffSBarry Smith This functionality is often obtained using `MatCreateSNESMF()` or with `SNES` solvers using `-snes_mf` or `-snes_mf_operator`
22556370053bSBarry Smith
22561cc06b55SBarry Smith .seealso: [](ch_matrices), `MatMFFDType`, `MATMFFD`, `MatCreateMFFD()`, `MatMFFDSetFuction()`, `MatMFFDSetType()`, `MatMFFDRegister()`,
22572ef1f0ffSBarry Smith `MatCreateSNESMF()`, `SNES`, `-snes_mf`, `-snes_mf_operator`
22586370053bSBarry Smith S*/
2259e884886fSBarry Smith typedef struct _p_MatMFFD *MatMFFD;
2260e884886fSBarry Smith
226176bdecfbSBarry Smith /*J
22622ef1f0ffSBarry Smith MatMFFDType - algorithm used to compute the `h` used in computing matrix-vector products via differencing of a function
2263e884886fSBarry Smith
226416a05f60SBarry Smith Values:
2265af27ebaaSBarry Smith + `MATMFFD_DS` - an algorithm described by Dennis and Schnabel {cite}`dennis:83`
2266af27ebaaSBarry Smith - `MATMFFD_WP` - the Walker-Pernice {cite}`pw98` strategy.
226716a05f60SBarry Smith
2268e884886fSBarry Smith Level: beginner
2269e884886fSBarry Smith
22701cc06b55SBarry Smith .seealso: [](ch_matrices), `MatMFFDSetType()`, `MatMFFDRegister()`, `MatMFFDSetFunction()`, `MatCreateMFFD()`
227176bdecfbSBarry Smith J*/
227219fd82e9SBarry Smith typedef const char *MatMFFDType;
2273e884886fSBarry Smith #define MATMFFD_DS "ds"
2274e884886fSBarry Smith #define MATMFFD_WP "wp"
2275e884886fSBarry Smith
227619fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode MatMFFDSetType(Mat, MatMFFDType);
2277bdf89e91SBarry Smith PETSC_EXTERN PetscErrorCode MatMFFDRegister(const char[], PetscErrorCode (*)(MatMFFD));
2278e884886fSBarry Smith
2279014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDDSSetUmin(Mat, PetscReal);
2280014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDWPSetComputeNormU(Mat, PetscBool);
2281e884886fSBarry Smith
228261ab5df0SBarry Smith PETSC_EXTERN PetscErrorCode MatFDColoringSetType(MatFDColoring, MatMFFDType);
228361ab5df0SBarry Smith
2284014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscViewerMathematicaPutMatrix(PetscViewer, PetscInt, PetscInt, PetscReal *);
2285014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscViewerMathematicaPutCSRMatrix(PetscViewer, PetscInt, PetscInt, PetscInt *, PetscInt *, PetscReal *);
22867dbadf16SMatthew Knepley
228753022affSStefano Zampini #ifdef PETSC_HAVE_H2OPUS
22888434afd1SBarry Smith PETSC_EXTERN_TYPEDEF typedef PetscScalar(MatH2OpusKernelFn)(PetscInt, PetscReal[], PetscReal[], void *);
22898434afd1SBarry Smith PETSC_EXTERN_TYPEDEF typedef MatH2OpusKernelFn *MatH2OpusKernel;
2290659ebe53SBarry Smith
22918434afd1SBarry Smith PETSC_EXTERN PetscErrorCode MatCreateH2OpusFromKernel(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscReal[], PetscBool, MatH2OpusKernelFn *, void *, PetscReal, PetscInt, PetscInt, Mat *);
229253022affSStefano Zampini PETSC_EXTERN PetscErrorCode MatCreateH2OpusFromMat(Mat, PetscInt, const PetscReal[], PetscBool, PetscReal, PetscInt, PetscInt, PetscInt, PetscReal, Mat *);
229353022affSStefano Zampini PETSC_EXTERN PetscErrorCode MatH2OpusSetSamplingMat(Mat, Mat, PetscInt, PetscReal);
229453022affSStefano Zampini PETSC_EXTERN PetscErrorCode MatH2OpusOrthogonalize(Mat);
229553022affSStefano Zampini PETSC_EXTERN PetscErrorCode MatH2OpusCompress(Mat, PetscReal);
229653022affSStefano Zampini PETSC_EXTERN PetscErrorCode MatH2OpusSetNativeMult(Mat, PetscBool);
229753022affSStefano Zampini PETSC_EXTERN PetscErrorCode MatH2OpusGetNativeMult(Mat, PetscBool *);
229853022affSStefano Zampini PETSC_EXTERN PetscErrorCode MatH2OpusGetIndexMap(Mat, IS *);
229953022affSStefano Zampini PETSC_EXTERN PetscErrorCode MatH2OpusMapVec(Mat, PetscBool, Vec, Vec *);
2300300d917bSStefano Zampini PETSC_EXTERN PetscErrorCode MatH2OpusLowRankUpdate(Mat, Mat, Mat, PetscScalar);
2301a0d2e7d8SStefano Zampini #endif
2302a0d2e7d8SStefano Zampini
2303c7a4214aSPierre Jolivet #ifdef PETSC_HAVE_HTOOL
2304348d23efSPierre Jolivet PETSC_EXTERN_TYPEDEF typedef PetscErrorCode MatHtoolKernelFn(PetscInt, PetscInt, PetscInt, const PetscInt *, const PetscInt *, PetscScalar *, void *);
23058434afd1SBarry Smith PETSC_EXTERN_TYPEDEF typedef MatHtoolKernelFn *MatHtoolKernel;
2306659ebe53SBarry Smith
23078434afd1SBarry Smith PETSC_EXTERN PetscErrorCode MatCreateHtoolFromKernel(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscReal[], const PetscReal[], MatHtoolKernelFn *, void *, Mat *);
23088434afd1SBarry Smith PETSC_EXTERN PetscErrorCode MatHtoolSetKernel(Mat, MatHtoolKernelFn *, void *);
230998e73e17SPierre Jolivet PETSC_EXTERN PetscErrorCode MatHtoolGetPermutationSource(Mat, IS *);
231098e73e17SPierre Jolivet PETSC_EXTERN PetscErrorCode MatHtoolGetPermutationTarget(Mat, IS *);
231198e73e17SPierre Jolivet PETSC_EXTERN PetscErrorCode MatHtoolUsePermutation(Mat, PetscBool);
2312c095613aSPierre Jolivet PETSC_EXTERN PetscErrorCode MatHtoolUseRecompression(Mat, PetscBool);
23132ef1f0ffSBarry Smith
2314c7a4214aSPierre Jolivet /*E
231587497f52SBarry Smith MatHtoolCompressorType - Indicates the type of compressor used by a `MATHTOOL`
2316c7a4214aSPierre Jolivet
2317c7a4214aSPierre Jolivet Values:
231887497f52SBarry Smith + `MAT_HTOOL_COMPRESSOR_SYMPARTIAL_ACA` (default) - symmetric partial adaptive cross approximation
231987497f52SBarry Smith . `MAT_HTOOL_COMPRESSOR_FULL_ACA` - full adaptive cross approximation
232087497f52SBarry Smith - `MAT_HTOOL_COMPRESSOR_SVD` - singular value decomposition
2321c7a4214aSPierre Jolivet
232216a05f60SBarry Smith Level: intermediate
232316a05f60SBarry Smith
23241cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatCreateHtoolFromKernel()`, `MATHTOOL`, `MatHtoolClusteringType`
2325c7a4214aSPierre Jolivet E*/
23269371c9d4SSatish Balay typedef enum {
23279371c9d4SSatish Balay MAT_HTOOL_COMPRESSOR_SYMPARTIAL_ACA,
23289371c9d4SSatish Balay MAT_HTOOL_COMPRESSOR_FULL_ACA,
23299371c9d4SSatish Balay MAT_HTOOL_COMPRESSOR_SVD
23309371c9d4SSatish Balay } MatHtoolCompressorType;
23312ef1f0ffSBarry Smith
233298e73e17SPierre Jolivet /*E
233387497f52SBarry Smith MatHtoolClusteringType - Indicates the type of clustering used by a `MATHTOOL`
233498e73e17SPierre Jolivet
233598e73e17SPierre Jolivet Values:
233687497f52SBarry Smith + `MAT_HTOOL_CLUSTERING_PCA_REGULAR` (default) - axis computed via principle component analysis, split uniformly
233787497f52SBarry Smith . `MAT_HTOOL_CLUSTERING_PCA_GEOMETRIC` - axis computed via principle component analysis, split barycentrically
233887497f52SBarry Smith . `MAT_HTOOL_CLUSTERING_BOUNDING_BOX_1_REGULAR` - axis along the largest extent of the bounding box, split uniformly
233987497f52SBarry Smith - `MAT_HTOOL_CLUSTERING_BOUNDING_BOX_1_GEOMETRIC` - axis along the largest extent of the bounding box, split barycentrically
234098e73e17SPierre Jolivet
234116a05f60SBarry Smith Level: intermediate
234216a05f60SBarry Smith
23432ef1f0ffSBarry Smith Note:
23442ef1f0ffSBarry Smith Higher-dimensional clustering is not yet supported in Htool, but once it is, one should add BOUNDING_BOX_{2,3} types
234598e73e17SPierre Jolivet
23461cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatCreateHtoolFromKernel()`, `MATHTOOL`, `MatHtoolCompressorType`
234798e73e17SPierre Jolivet E*/
23489371c9d4SSatish Balay typedef enum {
23499371c9d4SSatish Balay MAT_HTOOL_CLUSTERING_PCA_REGULAR,
23509371c9d4SSatish Balay MAT_HTOOL_CLUSTERING_PCA_GEOMETRIC,
23519371c9d4SSatish Balay MAT_HTOOL_CLUSTERING_BOUNDING_BOX_1_REGULAR,
23529371c9d4SSatish Balay MAT_HTOOL_CLUSTERING_BOUNDING_BOX_1_GEOMETRIC
23539371c9d4SSatish Balay } MatHtoolClusteringType;
2354c7a4214aSPierre Jolivet #endif
2355c7a4214aSPierre Jolivet
235697969023SHong Zhang #ifdef PETSC_HAVE_MUMPS
2357014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMumpsSetIcntl(Mat, PetscInt, PetscInt);
2358bc6112feSHong Zhang PETSC_EXTERN PetscErrorCode MatMumpsGetIcntl(Mat, PetscInt, PetscInt *);
2359b9e9ea26SSatish Balay PETSC_EXTERN PetscErrorCode MatMumpsSetCntl(Mat, PetscInt, PetscReal);
2360bc6112feSHong Zhang PETSC_EXTERN PetscErrorCode MatMumpsGetCntl(Mat, PetscInt, PetscReal *);
2361bc6112feSHong Zhang
2362ca810319SHong Zhang PETSC_EXTERN PetscErrorCode MatMumpsGetInfo(Mat, PetscInt, PetscInt *);
2363ca810319SHong Zhang PETSC_EXTERN PetscErrorCode MatMumpsGetInfog(Mat, PetscInt, PetscInt *);
2364ca810319SHong Zhang PETSC_EXTERN PetscErrorCode MatMumpsGetRinfo(Mat, PetscInt, PetscReal *);
2365ca810319SHong Zhang PETSC_EXTERN PetscErrorCode MatMumpsGetRinfog(Mat, PetscInt, PetscReal *);
23665c0bae8cSAshish Patel PETSC_EXTERN PetscErrorCode MatMumpsGetNullPivots(Mat, PetscInt *, PetscInt **);
236789a9c03aSHong Zhang PETSC_EXTERN PetscErrorCode MatMumpsGetInverse(Mat, Mat);
23680e6b8875SHong Zhang PETSC_EXTERN PetscErrorCode MatMumpsGetInverseTranspose(Mat, Mat);
236993d70b8aSPierre Jolivet PETSC_EXTERN PetscErrorCode MatMumpsSetBlk(Mat, PetscInt, const PetscInt[], const PetscInt[]);
2370ac521185SJunchao Zhang
2371ac521185SJunchao Zhang PETSC_EXTERN PetscErrorCode MatMumpsSetOocTmpDir(Mat, const char *);
2372ac521185SJunchao Zhang PETSC_EXTERN PetscErrorCode MatMumpsGetOocTmpDir(Mat, const char **);
237379578405SBarry Smith #else
MatMumpsSetIcntl(PETSC_UNUSED Mat F,PETSC_UNUSED PetscInt icntl,PETSC_UNUSED PetscInt ival)237479578405SBarry Smith static inline PetscErrorCode MatMumpsSetIcntl(PETSC_UNUSED Mat F, PETSC_UNUSED PetscInt icntl, PETSC_UNUSED PetscInt ival)
237579578405SBarry Smith {
237679578405SBarry Smith return PETSC_SUCCESS;
237779578405SBarry Smith }
MatMumpsSetCntl(PETSC_UNUSED Mat F,PETSC_UNUSED PetscInt icntl,PETSC_UNUSED PetscReal val)237879578405SBarry Smith static inline PetscErrorCode MatMumpsSetCntl(PETSC_UNUSED Mat F, PETSC_UNUSED PetscInt icntl, PETSC_UNUSED PetscReal val)
237979578405SBarry Smith {
238079578405SBarry Smith return PETSC_SUCCESS;
238179578405SBarry Smith }
238297969023SHong Zhang #endif
238323a5497aSJed Brown
2384b500a6b7SJose David Bermeol #ifdef PETSC_HAVE_MKL_PARDISO
2385d615f992SSatish Balay PETSC_EXTERN PetscErrorCode MatMkl_PardisoSetCntl(Mat, PetscInt, PetscInt);
2386b500a6b7SJose David Bermeol #endif
2387b500a6b7SJose David Bermeol
2388d305a81bSVasiliy Kozyrev #ifdef PETSC_HAVE_MKL_CPARDISO
2389d305a81bSVasiliy Kozyrev PETSC_EXTERN PetscErrorCode MatMkl_CPardisoSetCntl(Mat, PetscInt, PetscInt);
2390d305a81bSVasiliy Kozyrev #endif
2391d305a81bSVasiliy Kozyrev
2392d954db57SHong Zhang #ifdef PETSC_HAVE_SUPERLU
2393014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSuperluSetILUDropTol(Mat, PetscReal);
2394d954db57SHong Zhang #endif
2395d954db57SHong Zhang
2396fb785984SHong Zhang #ifdef PETSC_HAVE_SUPERLU_DIST
2397fb785984SHong Zhang PETSC_EXTERN PetscErrorCode MatSuperluDistGetDiagU(Mat, PetscScalar *);
2398fb785984SHong Zhang #endif
2399fb785984SHong Zhang
2400575704cbSPieter Ghysels #ifdef PETSC_HAVE_STRUMPACK
2401542aee0fSPieter Ghysels /*E
240229e0a805SPieter Ghysels MatSTRUMPACKReordering - sparsity reducing ordering to be used in `MATSOLVERSTRUMPACK`
2403542aee0fSPieter Ghysels
24042ef1f0ffSBarry Smith Values:
24052ef1f0ffSBarry Smith + `MAT_STRUMPACK_NATURAL` - use the current ordering
24062ef1f0ffSBarry Smith . `MAT_STRUMPACK_METIS` - use MeTis to compute an ordering
24072ef1f0ffSBarry Smith . `MAT_STRUMPACK_PARMETIS` - use ParMeTis to compute an ordering
24082ef1f0ffSBarry Smith . `MAT_STRUMPACK_SCOTCH` - use Scotch to compute an ordering
24092ef1f0ffSBarry Smith . `MAT_STRUMPACK_PTSCOTCH` - use parallel Scotch to compute an ordering
241029e0a805SPieter Ghysels . `MAT_STRUMPACK_RCM` - use an RCM ordering
241129e0a805SPieter Ghysels . `MAT_STRUMPACK_GEOMETRIC` - use a geometric ordering (needs mesh info from user)
241229e0a805SPieter Ghysels . `MAT_STRUMPACK_AMD` - approximate minimum degree
241329e0a805SPieter Ghysels . `MAT_STRUMPACK_MMD` - multiple minimum degree
241429e0a805SPieter Ghysels . `MAT_STRUMPACK_AND` - approximate nested dissection
241529e0a805SPieter Ghysels . `MAT_STRUMPACK_MLF` - minimum local fill
241629e0a805SPieter Ghysels - `MAT_STRUMPACK_SPECTRAL` - spectral nested dissection
24172ef1f0ffSBarry Smith
241816a05f60SBarry Smith Level: intermediate
241916a05f60SBarry Smith
24202ef1f0ffSBarry Smith Developer Note:
24212ef1f0ffSBarry Smith Should be called `MatSTRUMPACKReorderingType`
24222ef1f0ffSBarry Smith
242329e0a805SPieter Ghysels .seealso: `Mat`, `MATSOLVERSTRUMPACK`, `MatGetFactor()`, `MatSTRUMPACKSetReordering()`
2424542aee0fSPieter Ghysels E*/
24259371c9d4SSatish Balay typedef enum {
242629e0a805SPieter Ghysels MAT_STRUMPACK_NATURAL,
242729e0a805SPieter Ghysels MAT_STRUMPACK_METIS,
242829e0a805SPieter Ghysels MAT_STRUMPACK_PARMETIS,
242929e0a805SPieter Ghysels MAT_STRUMPACK_SCOTCH,
243029e0a805SPieter Ghysels MAT_STRUMPACK_PTSCOTCH,
243129e0a805SPieter Ghysels MAT_STRUMPACK_RCM,
243229e0a805SPieter Ghysels MAT_STRUMPACK_GEOMETRIC,
243329e0a805SPieter Ghysels MAT_STRUMPACK_AMD,
243429e0a805SPieter Ghysels MAT_STRUMPACK_MMD,
243529e0a805SPieter Ghysels MAT_STRUMPACK_AND,
243629e0a805SPieter Ghysels MAT_STRUMPACK_MLF,
243729e0a805SPieter Ghysels MAT_STRUMPACK_SPECTRAL
24389371c9d4SSatish Balay } MatSTRUMPACKReordering;
24392ef1f0ffSBarry Smith
244034f43fa5SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetReordering(Mat, MatSTRUMPACKReordering);
244129e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKGetReordering(Mat, MatSTRUMPACKReordering *);
244229e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetGeometricNxyz(Mat, PetscInt, PetscInt, PetscInt);
244329e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetGeometricComponents(Mat, PetscInt);
244429e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetGeometricWidth(Mat, PetscInt);
2445575704cbSPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetColPerm(Mat, PetscBool);
244629e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKGetColPerm(Mat, PetscBool *);
244729e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetGPU(Mat, PetscBool);
244829e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKGetGPU(Mat, PetscBool *);
244929e0a805SPieter Ghysels
245029e0a805SPieter Ghysels /*E
245129e0a805SPieter Ghysels MatSTRUMPACKCompressionType - Compression used in the approximate sparse factorization solver `MATSOLVERSTRUMPACK`
245229e0a805SPieter Ghysels
245329e0a805SPieter Ghysels Values:
245429e0a805SPieter Ghysels + `MAT_STRUMPACK_COMPRESSION_TYPE_NONE` - no compression, direct solver
245529e0a805SPieter Ghysels . `MAT_STRUMPACK_COMPRESSION_TYPE_HSS` - hierarchically semi-separable
245629e0a805SPieter Ghysels . `MAT_STRUMPACK_COMPRESSION_TYPE_BLR` - block low rank
245729e0a805SPieter Ghysels . `MAT_STRUMPACK_COMPRESSION_TYPE_HODLR` - hierarchically off-diagonal low rank (requires ButterfyPACK support, configure with --download-butterflypack)
245829e0a805SPieter Ghysels . `MAT_STRUMPACK_COMPRESSION_TYPE_BLR_HODLR` - hybrid of BLR and HODLR (requires ButterfyPACK support, configure with --download-butterflypack)
245929e0a805SPieter Ghysels . `MAT_STRUMPACK_COMPRESSION_TYPE_ZFP_BLR_HODLR` - hybrid of lossy (ZFP), BLR and HODLR (requires ButterfyPACK and ZFP support, configure with --download-butterflypack --download-zfp)
246029e0a805SPieter Ghysels . `MAT_STRUMPACK_COMPRESSION_TYPE_LOSSLESS` - lossless compression (requires ZFP support, configure with --download-zfp)
246129e0a805SPieter Ghysels - `MAT_STRUMPACK_COMPRESSION_TYPE_LOSSY` - lossy compression (requires ZFP support, configure with --download-zfp)
246229e0a805SPieter Ghysels
246329e0a805SPieter Ghysels Level: intermediate
246429e0a805SPieter Ghysels
246529e0a805SPieter Ghysels .seealso: `Mat`, `MATSOLVERSTRUMPACK`, `MatGetFactor()`, `MatSTRUMPACKSetCompression()`
246629e0a805SPieter Ghysels E*/
246729e0a805SPieter Ghysels typedef enum {
246829e0a805SPieter Ghysels MAT_STRUMPACK_COMPRESSION_TYPE_NONE,
246929e0a805SPieter Ghysels MAT_STRUMPACK_COMPRESSION_TYPE_HSS,
247029e0a805SPieter Ghysels MAT_STRUMPACK_COMPRESSION_TYPE_BLR,
247129e0a805SPieter Ghysels MAT_STRUMPACK_COMPRESSION_TYPE_HODLR,
247229e0a805SPieter Ghysels MAT_STRUMPACK_COMPRESSION_TYPE_BLR_HODLR,
247329e0a805SPieter Ghysels MAT_STRUMPACK_COMPRESSION_TYPE_ZFP_BLR_HODLR,
247429e0a805SPieter Ghysels MAT_STRUMPACK_COMPRESSION_TYPE_LOSSLESS,
247529e0a805SPieter Ghysels MAT_STRUMPACK_COMPRESSION_TYPE_LOSSY
247629e0a805SPieter Ghysels } MatSTRUMPACKCompressionType;
247729e0a805SPieter Ghysels
247829e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetCompression(Mat, MatSTRUMPACKCompressionType);
247929e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKGetCompression(Mat, MatSTRUMPACKCompressionType *);
248029e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetCompRelTol(Mat, PetscReal);
248129e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKGetCompRelTol(Mat, PetscReal *);
248229e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetCompAbsTol(Mat, PetscReal);
248329e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKGetCompAbsTol(Mat, PetscReal *);
248429e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetCompMinSepSize(Mat, PetscInt);
248529e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKGetCompMinSepSize(Mat, PetscInt *);
248629e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetCompLeafSize(Mat, PetscInt);
248729e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKGetCompLeafSize(Mat, PetscInt *);
248829e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetCompLossyPrecision(Mat, PetscInt);
248929e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKGetCompLossyPrecision(Mat, PetscInt *);
249029e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetCompButterflyLevels(Mat, PetscInt);
249129e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKGetCompButterflyLevels(Mat, PetscInt *);
2492575704cbSPieter Ghysels #endif
2493575704cbSPieter Ghysels
2494b470e4b4SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatBindToCPU(Mat, PetscBool);
24952216c58aSStefano Zampini PETSC_EXTERN PetscErrorCode MatBoundToCPU(Mat, PetscBool *);
MatPinToCPU(Mat A,PetscBool flg)2496edd03b47SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION(3, 13, 0, "MatBindToCPU()", ) static inline PetscErrorCode MatPinToCPU(Mat A, PetscBool flg)
2497d71ae5a4SJacob Faibussowitsch {
24989371c9d4SSatish Balay return MatBindToCPU(A, flg);
24999371c9d4SSatish Balay }
250065a9ecf2SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatSetBindingPropagates(Mat, PetscBool);
2501e9c74fd6SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatGetBindingPropagates(Mat, PetscBool *);
2502e7e92044SBarry Smith
2503aa372e3fSPaul Mullowney #ifdef PETSC_HAVE_CUDA
25043f9c0db1SPaul Mullowney /*E
25052ef1f0ffSBarry Smith MatCUSPARSEStorageFormat - indicates the storage format for `MATAIJCUSPARSE` (GPU)
25062692e278SPaul Mullowney matrices.
2507e057df02SPaul Mullowney
25082ef1f0ffSBarry Smith Values:
250987497f52SBarry Smith + `MAT_CUSPARSE_CSR` - Compressed Sparse Row
251087497f52SBarry Smith . `MAT_CUSPARSE_ELL` - Ellpack (requires CUDA 4.2 or later).
251187497f52SBarry Smith - `MAT_CUSPARSE_HYB` - Hybrid, a combination of Ellpack and Coordinate format (requires CUDA 4.2 or later).
2512e057df02SPaul Mullowney
2513e057df02SPaul Mullowney Level: intermediate
2514e057df02SPaul Mullowney
25151cc06b55SBarry Smith .seealso: [](ch_matrices), `MATAIJCUSPARSE`, `MatCUSPARSESetFormat()`, `MatCUSPARSEFormatOperation`
2516e057df02SPaul Mullowney E*/
2517e057df02SPaul Mullowney
25189371c9d4SSatish Balay typedef enum {
25199371c9d4SSatish Balay MAT_CUSPARSE_CSR,
25209371c9d4SSatish Balay MAT_CUSPARSE_ELL,
25219371c9d4SSatish Balay MAT_CUSPARSE_HYB
25229371c9d4SSatish Balay } MatCUSPARSEStorageFormat;
2523e057df02SPaul Mullowney
2524e057df02SPaul Mullowney /* these will be strings associated with enumerated type defined above */
2525e057df02SPaul Mullowney PETSC_EXTERN const char *const MatCUSPARSEStorageFormats[];
2526e057df02SPaul Mullowney
25273f9c0db1SPaul Mullowney /*E
25282ef1f0ffSBarry Smith MatCUSPARSEFormatOperation - indicates the operation of `MATAIJCUSPARSE` (GPU)
25292692e278SPaul Mullowney matrices whose operation should use a particular storage format.
2530e057df02SPaul Mullowney
25312ef1f0ffSBarry Smith Values:
25324cf0e950SBarry Smith + `MAT_CUSPARSE_MULT_DIAG` - sets the storage format for the diagonal matrix in the parallel `MatMult()`
25334cf0e950SBarry Smith . `MAT_CUSPARSE_MULT_OFFDIAG` - sets the storage format for the off-diagonal matrix in the parallel `MatMult()`
25344cf0e950SBarry Smith . `MAT_CUSPARSE_MULT` - sets the storage format for the entire matrix in the serial (single GPU) `MatMult()`
25352ef1f0ffSBarry Smith - `MAT_CUSPARSE_ALL` - sets the storage format for all `MATAIJCUSPARSE` (GPU) matrices
2536e057df02SPaul Mullowney
2537e057df02SPaul Mullowney Level: intermediate
2538e057df02SPaul Mullowney
25391cc06b55SBarry Smith .seealso: [](ch_matrices), `MatCUSPARSESetFormat()`, `MatCUSPARSEStorageFormat`
2540e057df02SPaul Mullowney E*/
25419371c9d4SSatish Balay typedef enum {
25429371c9d4SSatish Balay MAT_CUSPARSE_MULT_DIAG,
25439371c9d4SSatish Balay MAT_CUSPARSE_MULT_OFFDIAG,
25449371c9d4SSatish Balay MAT_CUSPARSE_MULT,
25459371c9d4SSatish Balay MAT_CUSPARSE_ALL
25469371c9d4SSatish Balay } MatCUSPARSEFormatOperation;
2547e057df02SPaul Mullowney
254810e9db80SPaul Mullowney PETSC_EXTERN PetscErrorCode MatCreateSeqAIJCUSPARSE(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *);
254910e9db80SPaul Mullowney PETSC_EXTERN PetscErrorCode MatCreateAIJCUSPARSE(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *);
2550e057df02SPaul Mullowney PETSC_EXTERN PetscErrorCode MatCUSPARSESetFormat(Mat, MatCUSPARSEFormatOperation, MatCUSPARSEStorageFormat);
2551365b711fSMark Adams PETSC_EXTERN PetscErrorCode MatCUSPARSESetUseCPUSolve(Mat, PetscBool);
25525f101d05SStefano Zampini PETSC_EXTERN PetscErrorCode MatSeqAIJCUSPARSEGetIJ(Mat, PetscBool, const int **, const int **);
25535f101d05SStefano Zampini PETSC_EXTERN PetscErrorCode MatSeqAIJCUSPARSERestoreIJ(Mat, PetscBool, const int **, const int **);
25545f101d05SStefano Zampini PETSC_EXTERN PetscErrorCode MatSeqAIJCUSPARSEGetArrayRead(Mat, const PetscScalar **);
25555f101d05SStefano Zampini PETSC_EXTERN PetscErrorCode MatSeqAIJCUSPARSERestoreArrayRead(Mat, const PetscScalar **);
25565f101d05SStefano Zampini PETSC_EXTERN PetscErrorCode MatSeqAIJCUSPARSEGetArrayWrite(Mat, PetscScalar **);
25575f101d05SStefano Zampini PETSC_EXTERN PetscErrorCode MatSeqAIJCUSPARSERestoreArrayWrite(Mat, PetscScalar **);
25585f101d05SStefano Zampini PETSC_EXTERN PetscErrorCode MatSeqAIJCUSPARSEGetArray(Mat, PetscScalar **);
25595f101d05SStefano Zampini PETSC_EXTERN PetscErrorCode MatSeqAIJCUSPARSERestoreArray(Mat, PetscScalar **);
2560637a0070SStefano Zampini
2561637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatCreateDenseCUDA(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscScalar[], Mat *);
2562637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatCreateSeqDenseCUDA(MPI_Comm, PetscInt, PetscInt, PetscScalar[], Mat *);
2563637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseCUDAGetArrayWrite(Mat, PetscScalar **);
2564637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseCUDAGetArrayRead(Mat, const PetscScalar **);
2565637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseCUDAGetArray(Mat, PetscScalar **);
2566637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseCUDARestoreArrayWrite(Mat, PetscScalar **);
2567637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseCUDARestoreArrayRead(Mat, const PetscScalar **);
2568637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseCUDARestoreArray(Mat, PetscScalar **);
2569637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseCUDAPlaceArray(Mat, const PetscScalar *);
2570d5ea218eSStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseCUDAReplaceArray(Mat, const PetscScalar *);
2571637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseCUDAResetArray(Mat);
25723d9668e3SJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatDenseCUDASetPreallocation(Mat, PetscScalar *);
25732d1451d4SHong Zhang
25742d1451d4SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateSeqSELLCUDA(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *);
25752d1451d4SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateSELLCUDA(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *);
25769ae82921SPaul Mullowney #endif
25779ae82921SPaul Mullowney
257847d993e7Ssuyashtn #ifdef PETSC_HAVE_HIP
257947d993e7Ssuyashtn /*E
25802ef1f0ffSBarry Smith MatHIPSPARSEStorageFormat - indicates the storage format for `MATAIJHIPSPARSE` (GPU)
258147d993e7Ssuyashtn matrices.
258247d993e7Ssuyashtn
25832ef1f0ffSBarry Smith Values:
25842ef1f0ffSBarry Smith + `MAT_HIPSPARSE_CSR` - Compressed Sparse Row
25852ef1f0ffSBarry Smith . `MAT_HIPSPARSE_ELL` - Ellpack
25862ef1f0ffSBarry Smith - `MAT_HIPSPARSE_HYB` - Hybrid, a combination of Ellpack and Coordinate format
258747d993e7Ssuyashtn
258816a05f60SBarry Smith Level: intermediate
258916a05f60SBarry Smith
25901cc06b55SBarry Smith .seealso: [](ch_matrices), `MatHIPSPARSESetFormat()`, `MatHIPSPARSEFormatOperation`
259147d993e7Ssuyashtn E*/
259247d993e7Ssuyashtn
259347d993e7Ssuyashtn typedef enum {
259447d993e7Ssuyashtn MAT_HIPSPARSE_CSR,
259547d993e7Ssuyashtn MAT_HIPSPARSE_ELL,
259647d993e7Ssuyashtn MAT_HIPSPARSE_HYB
259747d993e7Ssuyashtn } MatHIPSPARSEStorageFormat;
259847d993e7Ssuyashtn
259947d993e7Ssuyashtn /* these will be strings associated with enumerated type defined above */
260047d993e7Ssuyashtn PETSC_EXTERN const char *const MatHIPSPARSEStorageFormats[];
260147d993e7Ssuyashtn
260247d993e7Ssuyashtn /*E
26032ef1f0ffSBarry Smith MatHIPSPARSEFormatOperation - indicates the operation of `MATAIJHIPSPARSE` (GPU)
260447d993e7Ssuyashtn matrices whose operation should use a particular storage format.
260547d993e7Ssuyashtn
26062ef1f0ffSBarry Smith Values:
26072ef1f0ffSBarry Smith + `MAT_HIPSPARSE_MULT_DIAG` - sets the storage format for the diagonal matrix in the parallel `MatMult()`
26084cf0e950SBarry Smith . `MAT_HIPSPARSE_MULT_OFFDIAG` - sets the storage format for the off-diagonal matrix in the parallel `MatMult()`
26092ef1f0ffSBarry Smith . `MAT_HIPSPARSE_MULT` - sets the storage format for the entire matrix in the serial (single GPU) `MatMult()`
26102ef1f0ffSBarry Smith - `MAT_HIPSPARSE_ALL` - sets the storage format for all HIPSPARSE (GPU) matrices
26112ef1f0ffSBarry Smith
261216a05f60SBarry Smith Level: intermediate
261316a05f60SBarry Smith
26141cc06b55SBarry Smith .seealso: [](ch_matrices), `MatHIPSPARSESetFormat()`, `MatHIPSPARSEStorageFormat`
261547d993e7Ssuyashtn E*/
261647d993e7Ssuyashtn typedef enum {
261747d993e7Ssuyashtn MAT_HIPSPARSE_MULT_DIAG,
261847d993e7Ssuyashtn MAT_HIPSPARSE_MULT_OFFDIAG,
261947d993e7Ssuyashtn MAT_HIPSPARSE_MULT,
262047d993e7Ssuyashtn MAT_HIPSPARSE_ALL
262147d993e7Ssuyashtn } MatHIPSPARSEFormatOperation;
262247d993e7Ssuyashtn
262347d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatCreateSeqAIJHIPSPARSE(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *);
262447d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatCreateAIJHIPSPARSE(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *);
262547d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatHIPSPARSESetFormat(Mat, MatHIPSPARSEFormatOperation, MatHIPSPARSEStorageFormat);
262647d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatHIPSPARSESetUseCPUSolve(Mat, PetscBool);
262747d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatSeqAIJHIPSPARSEGetIJ(Mat, PetscBool, const int **, const int **);
262847d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatSeqAIJHIPSPARSERestoreIJ(Mat, PetscBool, const int **, const int **);
262947d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatSeqAIJHIPSPARSEGetArrayRead(Mat, const PetscScalar **);
263047d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatSeqAIJHIPSPARSERestoreArrayRead(Mat, const PetscScalar **);
263147d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatSeqAIJHIPSPARSEGetArrayWrite(Mat, PetscScalar **);
263247d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatSeqAIJHIPSPARSERestoreArrayWrite(Mat, PetscScalar **);
263347d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatSeqAIJHIPSPARSEGetArray(Mat, PetscScalar **);
263447d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatSeqAIJHIPSPARSERestoreArray(Mat, PetscScalar **);
263547d993e7Ssuyashtn
263647d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatCreateDenseHIP(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscScalar[], Mat *);
263747d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatCreateSeqDenseHIP(MPI_Comm, PetscInt, PetscInt, PetscScalar[], Mat *);
263847d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatDenseHIPGetArrayWrite(Mat, PetscScalar **);
263947d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatDenseHIPGetArrayRead(Mat, const PetscScalar **);
264047d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatDenseHIPGetArray(Mat, PetscScalar **);
264147d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatDenseHIPRestoreArrayWrite(Mat, PetscScalar **);
264247d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatDenseHIPRestoreArrayRead(Mat, const PetscScalar **);
264347d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatDenseHIPRestoreArray(Mat, PetscScalar **);
264447d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatDenseHIPPlaceArray(Mat, const PetscScalar *);
264547d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatDenseHIPReplaceArray(Mat, const PetscScalar *);
264647d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatDenseHIPResetArray(Mat);
26473d9668e3SJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatDenseHIPSetPreallocation(Mat, PetscScalar *);
2648773bf0f6SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateSeqSELLHIP(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *);
2649773bf0f6SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateSELLHIP(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *);
265047d993e7Ssuyashtn #endif
265147d993e7Ssuyashtn
2652d67ff14aSKarl Rupp #if defined(PETSC_HAVE_VIENNACL)
2653d67ff14aSKarl Rupp PETSC_EXTERN PetscErrorCode MatCreateSeqAIJViennaCL(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *);
2654d67ff14aSKarl Rupp PETSC_EXTERN PetscErrorCode MatCreateAIJViennaCL(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *);
2655d67ff14aSKarl Rupp #endif
2656d67ff14aSKarl Rupp
26574bf303faSJacob Faibussowitsch #if PetscDefined(HAVE_KOKKOS)
26584bf303faSJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatCreateAIJKokkos(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *);
26594bf303faSJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatCreateSeqAIJKokkos(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *);
26604bf303faSJacob Faibussowitsch #endif
26614bf303faSJacob Faibussowitsch
266254efbe56SHong Zhang #if defined(PETSC_HAVE_FFTW)
2663014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecScatterPetscToFFTW(Mat, Vec, Vec);
2664014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecScatterFFTWToPetsc(Mat, Vec, Vec);
26652a7a6963SBarry Smith PETSC_EXTERN PetscErrorCode MatCreateVecsFFTW(Mat, Vec *, Vec *, Vec *);
266654efbe56SHong Zhang #endif
266754efbe56SHong Zhang
2668d1a032dbSPierre Jolivet #if defined(PETSC_HAVE_SCALAPACK) && (defined(PETSC_USE_REAL_SINGLE) || defined(PETSC_USE_REAL_DOUBLE))
2669d24d4204SJose E. Roman PETSC_EXTERN PetscErrorCode MatCreateScaLAPACK(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, Mat *);
2670d24d4204SJose E. Roman PETSC_EXTERN PetscErrorCode MatScaLAPACKSetBlockSizes(Mat, PetscInt, PetscInt);
2671d24d4204SJose E. Roman PETSC_EXTERN PetscErrorCode MatScaLAPACKGetBlockSizes(Mat, PetscInt *, PetscInt *);
2672d24d4204SJose E. Roman #endif
2673d24d4204SJose E. Roman
2674014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateNest(MPI_Comm, PetscInt, const IS[], PetscInt, const IS[], const Mat[], Mat *);
2675014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNestGetSize(Mat, PetscInt *, PetscInt *);
2676014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNestGetISs(Mat, IS[], IS[]);
2677014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNestGetLocalISs(Mat, IS[], IS[]);
2678014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNestGetSubMats(Mat, PetscInt *, PetscInt *, Mat ***);
2679014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNestGetSubMat(Mat, PetscInt, PetscInt, Mat *);
268019fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode MatNestSetVecType(Mat, VecType);
2681014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNestSetSubMats(Mat, PetscInt, const IS[], PetscInt, const IS[], const Mat[]);
2682014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNestSetSubMat(Mat, PetscInt, PetscInt, Mat);
2683d8588912SDave May
26842ce66baaSPierre Jolivet PETSC_EXTERN PetscErrorCode MatFilter(Mat, PetscReal, PetscBool, PetscBool);
MatChop(Mat A,PetscReal tol)26852ce66baaSPierre Jolivet PETSC_DEPRECATED_FUNCTION(3, 20, 0, "MatFilter()", ) static inline PetscErrorCode MatChop(Mat A, PetscReal tol)
26862ce66baaSPierre Jolivet {
26872ce66baaSPierre Jolivet return MatFilter(A, tol, PETSC_FALSE, PETSC_FALSE);
26882ce66baaSPierre Jolivet }
2689e0a58c10SMatthew G. Knepley PETSC_EXTERN PetscErrorCode MatComputeBandwidth(Mat, PetscReal, PetscInt *);
26904325cce7SMatthew G Knepley
2691b541e6a4SDmitry Karpeev PETSC_EXTERN PetscErrorCode MatSubdomainsCreateCoalesce(Mat, PetscInt, PetscInt *, IS **);
269253dd7562SDmitry Karpeev
2693c094ef40SMatthew G. Knepley PETSC_EXTERN PetscErrorCode MatPreallocatorPreallocate(Mat, PetscBool, Mat);
2694c094ef40SMatthew G. Knepley
269502218ef1SBarry Smith PETSC_EXTERN PetscErrorCode MatHeaderMerge(Mat, Mat *);
2696539c167fSBarry Smith PETSC_EXTERN PetscErrorCode MatHeaderReplace(Mat, Mat *);
26971a2c6b5cSJunchao Zhang
26987ee59b9bSJunchao Zhang PETSC_EXTERN PetscErrorCode MatSeqAIJGetCSRAndMemType(Mat, const PetscInt **, const PetscInt **, PetscScalar **, PetscMemType *);
269972833a62Smarkadams4
2700e02fb3cdSMark Adams PETSC_EXTERN PetscErrorCode MatCreateGraph(Mat, PetscBool, PetscBool, PetscReal, PetscInt, PetscInt[], Mat *);
270158c11ad4SPierre Jolivet PETSC_EXTERN PetscErrorCode MatEliminateZeros(Mat, PetscBool);
2702ad6ad4e1SHansol Suh
2703d16ceb75SStefano Zampini PETSC_EXTERN PetscErrorCode MatCreateDenseFromVecType(MPI_Comm, VecType, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, PetscScalar *, Mat *);
27043444e80cSBarry Smith
27053444e80cSBarry Smith PETSC_EXTERN PetscErrorCode MatSetHPL(Mat, int);
27063444e80cSBarry Smith #define PETSCBMHPL "hpl"
2707ce78bad3SBarry Smith
2708ce78bad3SBarry Smith PETSC_EXTERN PetscErrorCode MatDFischer(Mat, Vec, Vec, Vec, Vec, Vec, Vec, Vec, Vec);
2709