1 /* 2 Include file for the matrix component of PETSc 3 */ 4 #ifndef __PETSCMAT_H 5 #define __PETSCMAT_H 6 #include "petscvec.h" 7 PETSC_EXTERN_CXX_BEGIN 8 9 /*S 10 Mat - Abstract PETSc matrix object 11 12 Level: beginner 13 14 Concepts: matrix; linear operator 15 16 .seealso: MatCreate(), MatType, MatSetType() 17 S*/ 18 typedef struct _p_Mat* Mat; 19 20 /*E 21 MatType - String with the name of a PETSc matrix or the creation function 22 with an optional dynamic library name, for example 23 http://www.mcs.anl.gov/petsc/lib.a:mymatcreate() 24 25 Level: beginner 26 27 .seealso: MatSetType(), Mat, MatSolverPackage 28 E*/ 29 #define MatType char* 30 #define MATSAME "same" 31 #define MATSEQMAIJ "seqmaij" 32 #define MATMPIMAIJ "mpimaij" 33 #define MATMAIJ "maij" 34 #define MATIS "is" 35 #define MATSEQAIJ "seqaij" 36 #define MATMPIAIJ "mpiaij" 37 #define MATAIJ "aij" 38 #define MATSHELL "shell" 39 #define MATSEQDENSE "seqdense" 40 #define MATMPIDENSE "mpidense" 41 #define MATDENSE "dense" 42 #define MATSEQBAIJ "seqbaij" 43 #define MATMPIBAIJ "mpibaij" 44 #define MATBAIJ "baij" 45 #define MATMPIADJ "mpiadj" 46 #define MATSEQSBAIJ "seqsbaij" 47 #define MATMPISBAIJ "mpisbaij" 48 #define MATSBAIJ "sbaij" 49 #define MATDAAD "daad" 50 #define MATMFFD "mffd" 51 #define MATNORMAL "normal" 52 #define MATLRC "lrc" 53 #define MATSEQCSRPERM "seqcsrperm" 54 #define MATMPICSRPERM "mpicsrperm" 55 #define MATCSRPERM "csrperm" 56 #define MATSEQCRL "seqcrl" 57 #define MATMPICRL "mpicrl" 58 #define MATCRL "crl" 59 #define MATSCATTER "scatter" 60 #define MATBLOCKMAT "blockmat" 61 #define MATCOMPOSITE "composite" 62 #define MATSEQFFTW "seqfftw" 63 #define MATTRANSPOSEMAT "transpose" 64 #define MATSCHURCOMPLEMENT "schurcomplement" 65 #define MATPYTHON "python" 66 #define MATHYPRESTRUCT "hyprestruct" 67 #define MATHYPRESSTRUCT "hypresstruct" 68 #define MATSUBMATRIX "submatrix" 69 70 71 #define MATFWK "matfwk" 72 73 74 /*E 75 MatSolverPackage - String with the name of a PETSc matrix solver type. 76 77 For example: "petsc" indicates what PETSc provides, "superlu" indicates either 78 SuperLU or SuperLU_Dist etc. 79 80 81 Level: beginner 82 83 .seealso: MatGetFactor(), Mat, MatSetType(), MatType 84 E*/ 85 #define MatSolverPackage char* 86 #define MAT_SOLVER_SPOOLES "spooles" 87 #define MAT_SOLVER_SUPERLU "superlu" 88 #define MAT_SOLVER_SUPERLU_DIST "superlu_dist" 89 #define MAT_SOLVER_UMFPACK "umfpack" 90 #define MAT_SOLVER_ESSL "essl" 91 #define MAT_SOLVER_LUSOL "lusol" 92 #define MAT_SOLVER_MUMPS "mumps" 93 #define MAT_SOLVER_PASTIX "pastix" 94 #define MAT_SOLVER_DSCPACK "dscpack" 95 #define MAT_SOLVER_MATLAB "matlab" 96 #define MAT_SOLVER_PETSC "petsc" 97 #define MAT_SOLVER_PLAPACK "plapack" 98 #define MAT_SOLVER_BAS "bas" 99 100 /*E 101 MatFactorType - indicates what type of factorization is requested 102 103 Level: beginner 104 105 Any additions/changes here MUST also be made in include/finclude/petscmat.h 106 107 .seealso: MatSolverPackage, MatGetFactor() 108 E*/ 109 typedef enum {MAT_FACTOR_NONE, MAT_FACTOR_LU, MAT_FACTOR_CHOLESKY, MAT_FACTOR_ILU, MAT_FACTOR_ICC,MAT_FACTOR_ILUDT} MatFactorType; 110 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatGetFactor(Mat,const MatSolverPackage,MatFactorType,Mat*); 111 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatGetFactorAvailable(Mat,const MatSolverPackage,MatFactorType,PetscTruth*); 112 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatFactorGetSolverPackage(Mat,const MatSolverPackage*); 113 114 115 /* Logging support */ 116 #define MAT_FILE_CLASSID 1211216 /* used to indicate matrices in binary files */ 117 extern PetscClassId PETSCMAT_DLLEXPORT MAT_CLASSID; 118 extern PetscClassId PETSCMAT_DLLEXPORT MAT_FDCOLORING_CLASSID; 119 extern PetscClassId PETSCMAT_DLLEXPORT MAT_PARTITIONING_CLASSID; 120 extern PetscClassId PETSCMAT_DLLEXPORT MAT_NULLSPACE_CLASSID; 121 extern PetscClassId PETSCMAT_DLLEXPORT MATMFFD_CLASSID; 122 123 /*E 124 MatReuse - Indicates if matrices obtained from a previous call to MatGetSubMatrices() 125 or MatGetSubMatrix() are to be reused to store the new matrix values. 126 127 Level: beginner 128 129 Any additions/changes here MUST also be made in include/finclude/petscmat.h 130 131 .seealso: MatGetSubMatrices(), MatGetSubMatrix(), MatDestroyMatrices(), MatConvert() 132 E*/ 133 typedef enum {MAT_INITIAL_MATRIX,MAT_REUSE_MATRIX,MAT_IGNORE_MATRIX} MatReuse; 134 135 /*E 136 MatGetSubMatrixOption - Indicates if matrices obtained from a call to MatGetSubMatrices() 137 include the matrix values. Currently it is only used by MatGetSeqNonzerostructure(). 138 139 Level: beginner 140 141 .seealso: MatGetSeqNonzerostructure() 142 E*/ 143 typedef enum {MAT_DO_NOT_GET_VALUES,MAT_GET_VALUES} MatGetSubMatrixOption; 144 145 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatInitializePackage(const char[]); 146 147 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatCreate(MPI_Comm,Mat*); 148 PetscPolymorphicFunction(MatCreate,(MPI_Comm comm),(comm,&A),Mat,A) 149 PetscPolymorphicFunction(MatCreate,(),(PETSC_COMM_WORLD,&A),Mat,A) 150 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatSetSizes(Mat,PetscInt,PetscInt,PetscInt,PetscInt); 151 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatSetType(Mat,const MatType); 152 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatSetFromOptions(Mat); 153 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatSetUpPreallocation(Mat); 154 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatRegisterAll(const char[]); 155 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatRegister(const char[],const char[],const char[],PetscErrorCode(*)(Mat)); 156 157 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatSetOptionsPrefix(Mat,const char[]); 158 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatAppendOptionsPrefix(Mat,const char[]); 159 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatGetOptionsPrefix(Mat,const char*[]); 160 161 /*MC 162 MatRegisterDynamic - Adds a new matrix type 163 164 Synopsis: 165 PetscErrorCode MatRegisterDynamic(const char *name,const char *path,const char *name_create,PetscErrorCode (*routine_create)(Mat)) 166 167 Not Collective 168 169 Input Parameters: 170 + name - name of a new user-defined matrix type 171 . path - path (either absolute or relative) the library containing this solver 172 . name_create - name of routine to create method context 173 - routine_create - routine to create method context 174 175 Notes: 176 MatRegisterDynamic() may be called multiple times to add several user-defined solvers. 177 178 If dynamic libraries are used, then the fourth input argument (routine_create) 179 is ignored. 180 181 Sample usage: 182 .vb 183 MatRegisterDynamic("my_mat",/home/username/my_lib/lib/libO/solaris/mylib.a, 184 "MyMatCreate",MyMatCreate); 185 .ve 186 187 Then, your solver can be chosen with the procedural interface via 188 $ MatSetType(Mat,"my_mat") 189 or at runtime via the option 190 $ -mat_type my_mat 191 192 Level: advanced 193 194 Notes: ${PETSC_ARCH} occuring in pathname will be replaced with appropriate values. 195 If your function is not being put into a shared library then use VecRegister() instead 196 197 .keywords: Mat, register 198 199 .seealso: MatRegisterAll(), MatRegisterDestroy() 200 201 M*/ 202 #if defined(PETSC_USE_DYNAMIC_LIBRARIES) 203 #define MatRegisterDynamic(a,b,c,d) MatRegister(a,b,c,0) 204 #else 205 #define MatRegisterDynamic(a,b,c,d) MatRegister(a,b,c,d) 206 #endif 207 208 extern PetscTruth MatRegisterAllCalled; 209 extern PetscFList MatList; 210 extern PetscFList MatColoringList; 211 extern PetscFList MatPartitioningList; 212 213 /*E 214 MatStructure - Indicates if the matrix has the same nonzero structure 215 216 Level: beginner 217 218 Any additions/changes here MUST also be made in include/finclude/petscmat.h 219 220 .seealso: MatCopy(), KSPSetOperators(), PCSetOperators() 221 E*/ 222 typedef enum {SAME_NONZERO_PATTERN,DIFFERENT_NONZERO_PATTERN,SAME_PRECONDITIONER,SUBSET_NONZERO_PATTERN} MatStructure; 223 224 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatCreateSeqDense(MPI_Comm,PetscInt,PetscInt,PetscScalar[],Mat*); 225 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatCreateMPIDense(MPI_Comm,PetscInt,PetscInt,PetscInt,PetscInt,PetscScalar[],Mat*); 226 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatCreateSeqAIJ(MPI_Comm,PetscInt,PetscInt,PetscInt,const PetscInt[],Mat*); 227 PetscPolymorphicFunction(MatCreateSeqAIJ,(PetscInt m,PetscInt n,PetscInt nz,const PetscInt nnz[]),(PETSC_COMM_SELF,m,n,nz,nnz,&A),Mat,A) 228 PetscPolymorphicFunction(MatCreateSeqAIJ,(PetscInt m,PetscInt n,PetscInt nz),(PETSC_COMM_SELF,m,n,nz,PETSC_NULL,&A),Mat,A) 229 PetscPolymorphicFunction(MatCreateSeqAIJ,(PetscInt m,PetscInt n,const PetscInt nnz[]),(PETSC_COMM_SELF,m,n,0,nnz,&A),Mat,A) 230 PetscPolymorphicFunction(MatCreateSeqAIJ,(PetscInt m,PetscInt n),(PETSC_COMM_SELF,m,n,0,PETSC_NULL,&A),Mat,A) 231 PetscPolymorphicSubroutine(MatCreateSeqAIJ,(PetscInt m,PetscInt n,PetscInt nz,Mat *A),(PETSC_COMM_SELF,m,n,nz,PETSC_NULL,A)) 232 PetscPolymorphicSubroutine(MatCreateSeqAIJ,(PetscInt m,PetscInt n,const PetscInt nnz[],Mat *A),(PETSC_COMM_SELF,m,n,0,nnz,A)) 233 PetscPolymorphicSubroutine(MatCreateSeqAIJ,(PetscInt m,PetscInt n,Mat *A),(PETSC_COMM_SELF,m,n,0,PETSC_NULL,A)) 234 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatCreateMPIAIJ(MPI_Comm,PetscInt,PetscInt,PetscInt,PetscInt,PetscInt,const PetscInt[],PetscInt,const PetscInt[],Mat*); 235 PetscPolymorphicFunction(MatCreateMPIAIJ,(MPI_Comm comm,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscInt nz,const PetscInt nnz[],PetscInt onz,const PetscInt onnz[]),(comm,m,n,M,N,nz,nnz,onz,onnz,&A),Mat,A) 236 PetscPolymorphicFunction(MatCreateMPIAIJ,(MPI_Comm comm,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscInt nz,PetscInt nnz),(comm,m,n,M,N,nz,PETSC_NULL,nnz,PETSC_NULL,&A),Mat,A) 237 PetscPolymorphicFunction(MatCreateMPIAIJ,(MPI_Comm comm,PetscInt m,PetscInt n,PetscInt M,PetscInt N,const PetscInt nnz[],const PetscInt onz[]),(comm,m,n,M,N,0,nnz,0,onz,&A),Mat,A) 238 PetscPolymorphicFunction(MatCreateMPIAIJ,(MPI_Comm comm,PetscInt m,PetscInt n,PetscInt M,PetscInt N),(comm,m,n,M,N,0,PETSC_NULL,0,PETSC_NULL,&A),Mat,A) 239 PetscPolymorphicSubroutine(MatCreateMPIAIJ,(MPI_Comm comm,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscInt nz,PetscInt nnz,Mat *A),(comm,m,n,M,N,nz,PETSC_NULL,nnz,PETSC_NULL,A)) 240 PetscPolymorphicSubroutine(MatCreateMPIAIJ,(MPI_Comm comm,PetscInt m,PetscInt n,PetscInt M,PetscInt N,const PetscInt nnz[],const PetscInt onz[],Mat *A),(comm,m,n,M,N,0,nnz,0,onz,A)) 241 PetscPolymorphicSubroutine(MatCreateMPIAIJ,(MPI_Comm comm,PetscInt m,PetscInt n,PetscInt M,PetscInt N,Mat *A),(comm,m,n,M,N,0,PETSC_NULL,0,PETSC_NULL,A)) 242 PetscPolymorphicFunction(MatCreateMPIAIJ,(PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscInt nz,const PetscInt nnz[],PetscInt onz,const PetscInt onnz[]),(PETSC_COMM_WORLD,m,n,M,N,nz,nnz,onz,onnz,&A),Mat,A) 243 PetscPolymorphicFunction(MatCreateMPIAIJ,(PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscInt nz,PetscInt nnz),(PETSC_COMM_WORLD,m,n,M,N,nz,PETSC_NULL,nnz,PETSC_NULL,&A),Mat,A) 244 PetscPolymorphicFunction(MatCreateMPIAIJ,(PetscInt m,PetscInt n,PetscInt M,PetscInt N,const PetscInt nnz[],const PetscInt onz[]),(PETSC_COMM_WORLD,m,n,M,N,0,nnz,0,onz,&A),Mat,A) 245 PetscPolymorphicFunction(MatCreateMPIAIJ,(PetscInt m,PetscInt n,PetscInt M,PetscInt N),(PETSC_COMM_WORLD,m,n,M,N,0,PETSC_NULL,0,PETSC_NULL,&A),Mat,A) 246 PetscPolymorphicSubroutine(MatCreateMPIAIJ,(PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscInt nz,PetscInt nnz,Mat *A),(PETSC_COMM_WORLD,m,n,M,N,nz,PETSC_NULL,nnz,PETSC_NULL,A)) 247 PetscPolymorphicSubroutine(MatCreateMPIAIJ,(PetscInt m,PetscInt n,PetscInt M,PetscInt N,const PetscInt nnz[],const PetscInt onz[],Mat *A),(PETSC_COMM_WORLD,m,n,M,N,0,nnz,0,onz,A)) 248 PetscPolymorphicSubroutine(MatCreateMPIAIJ,(PetscInt m,PetscInt n,PetscInt M,PetscInt N,Mat *A),(PETSC_COMM_WORLD,m,n,M,N,0,PETSC_NULL,0,PETSC_NULL,A)) 249 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatCreateMPIAIJWithArrays(MPI_Comm,PetscInt,PetscInt,PetscInt,PetscInt,const PetscInt[],const PetscInt[],const PetscScalar[],Mat *); 250 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatCreateMPIAIJWithSplitArrays(MPI_Comm,PetscInt,PetscInt,PetscInt,PetscInt,PetscInt[],PetscInt[],PetscScalar[],PetscInt[],PetscInt[],PetscScalar[],Mat*); 251 252 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatCreateSeqBAIJ(MPI_Comm,PetscInt,PetscInt,PetscInt,PetscInt,const PetscInt[],Mat*); 253 PetscPolymorphicFunction(MatCreateSeqBAIJ,(PetscInt bs,PetscInt m,PetscInt n,PetscInt nz,const PetscInt nnz[]),(PETSC_COMM_SELF,bs,m,n,nz,nnz,&A),Mat,A) 254 PetscPolymorphicFunction(MatCreateSeqBAIJ,(PetscInt bs,PetscInt m,PetscInt n,PetscInt nz),(PETSC_COMM_SELF,bs,m,n,nz,PETSC_NULL,&A),Mat,A) 255 PetscPolymorphicFunction(MatCreateSeqBAIJ,(PetscInt bs,PetscInt m,PetscInt n,const PetscInt nnz[]),(PETSC_COMM_SELF,bs,m,n,0,nnz,&A),Mat,A) 256 PetscPolymorphicFunction(MatCreateSeqBAIJ,(PetscInt bs,PetscInt m,PetscInt n),(PETSC_COMM_SELF,bs,m,n,0,PETSC_NULL,&A),Mat,A) 257 PetscPolymorphicSubroutine(MatCreateSeqBAIJ,(PetscInt bs,PetscInt m,PetscInt n,PetscInt nz,Mat *A),(PETSC_COMM_SELF,bs,m,n,nz,PETSC_NULL,A)) 258 PetscPolymorphicSubroutine(MatCreateSeqBAIJ,(PetscInt bs,PetscInt m,PetscInt n,const PetscInt nnz[],Mat *A),(PETSC_COMM_SELF,bs,m,n,0,nnz,A)) 259 PetscPolymorphicSubroutine(MatCreateSeqBAIJ,(PetscInt bs,PetscInt m,PetscInt n,Mat *A),(PETSC_COMM_SELF,bs,m,n,0,PETSC_NULL,A)) 260 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatCreateMPIBAIJ(MPI_Comm,PetscInt,PetscInt,PetscInt,PetscInt,PetscInt,PetscInt,const PetscInt[],PetscInt,const PetscInt[],Mat*); 261 PetscPolymorphicFunction(MatCreateMPIBAIJ,(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscInt nz,const PetscInt nnz[],PetscInt onz,const PetscInt onnz[]),(comm,bs,m,n,M,N,nz,nnz,onz,onnz,&A),Mat,A) 262 PetscPolymorphicFunction(MatCreateMPIBAIJ,(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscInt nz,PetscInt nnz),(comm,bs,m,n,M,N,nz,PETSC_NULL,nnz,PETSC_NULL,&A),Mat,A) 263 PetscPolymorphicFunction(MatCreateMPIBAIJ,(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,const PetscInt nnz[],const PetscInt onz[]),(comm,bs,m,n,M,N,0,nnz,0,onz,&A),Mat,A) 264 PetscPolymorphicFunction(MatCreateMPIBAIJ,(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N),(comm,bs,m,n,M,N,0,PETSC_NULL,0,PETSC_NULL,&A),Mat,A) 265 PetscPolymorphicSubroutine(MatCreateMPIBAIJ,(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscInt nz,PetscInt nnz,Mat *A),(comm,bs,m,n,M,N,nz,PETSC_NULL,nnz,PETSC_NULL,A)) 266 PetscPolymorphicSubroutine(MatCreateMPIBAIJ,(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,const PetscInt nnz[],const PetscInt onz[],Mat *A),(comm,bs,m,n,M,N,0,nnz,0,onz,A)) 267 PetscPolymorphicSubroutine(MatCreateMPIBAIJ,(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,Mat *A),(comm,bs,m,n,M,N,0,PETSC_NULL,0,PETSC_NULL,A)) 268 PetscPolymorphicFunction(MatCreateMPIBAIJ,(PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscInt nz,const PetscInt nnz[],PetscInt onz,const PetscInt onnz[]),(PETSC_COMM_WORLD,bs,m,n,M,N,nz,nnz,onz,onnz,&A),Mat,A) 269 PetscPolymorphicFunction(MatCreateMPIBAIJ,(PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscInt nz,PetscInt nnz),(PETSC_COMM_WORLD,bs,m,n,M,N,nz,PETSC_NULL,nnz,PETSC_NULL,&A),Mat,A) 270 PetscPolymorphicFunction(MatCreateMPIBAIJ,(PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,const PetscInt nnz[],const PetscInt onz[]),(PETSC_COMM_WORLD,bs,m,n,M,N,0,nnz,0,onz,&A),Mat,A) 271 PetscPolymorphicFunction(MatCreateMPIBAIJ,(PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N),(PETSC_COMM_WORLD,bs,m,n,M,N,0,PETSC_NULL,0,PETSC_NULL,&A),Mat,A) 272 PetscPolymorphicSubroutine(MatCreateMPIBAIJ,(PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscInt nz,PetscInt nnz,Mat *A),(PETSC_COMM_WORLD,bs,m,n,M,N,nz,PETSC_NULL,nnz,PETSC_NULL,A)) 273 PetscPolymorphicSubroutine(MatCreateMPIBAIJ,(PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,const PetscInt nnz[],const PetscInt onz[],Mat *A),(PETSC_COMM_WORLD,bs,m,n,M,N,0,nnz,0,onz,A)) 274 PetscPolymorphicSubroutine(MatCreateMPIBAIJ,(PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,Mat *A),(PETSC_COMM_WORLD,bs,m,n,M,N,0,PETSC_NULL,0,PETSC_NULL,A)) 275 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatCreateMPIAdj(MPI_Comm,PetscInt,PetscInt,PetscInt[],PetscInt[],PetscInt[],Mat*); 276 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatCreateSeqSBAIJ(MPI_Comm,PetscInt,PetscInt,PetscInt,PetscInt,const PetscInt[],Mat*); 277 PetscPolymorphicFunction(MatCreateSeqSBAIJ,(PetscInt bs,PetscInt m,PetscInt n,PetscInt nz,const PetscInt nnz[]),(PETSC_COMM_SELF,bs,m,n,nz,nnz,&A),Mat,A) 278 PetscPolymorphicFunction(MatCreateSeqSBAIJ,(PetscInt bs,PetscInt m,PetscInt n,PetscInt nz),(PETSC_COMM_SELF,bs,m,n,nz,PETSC_NULL,&A),Mat,A) 279 PetscPolymorphicFunction(MatCreateSeqSBAIJ,(PetscInt bs,PetscInt m,PetscInt n,const PetscInt nnz[]),(PETSC_COMM_SELF,bs,m,n,0,nnz,&A),Mat,A) 280 PetscPolymorphicFunction(MatCreateSeqSBAIJ,(PetscInt bs,PetscInt m,PetscInt n),(PETSC_COMM_SELF,bs,m,n,0,PETSC_NULL,&A),Mat,A) 281 PetscPolymorphicSubroutine(MatCreateSeqSBAIJ,(PetscInt bs,PetscInt m,PetscInt n,PetscInt nz,Mat *A),(PETSC_COMM_SELF,bs,m,n,nz,PETSC_NULL,A)) 282 PetscPolymorphicSubroutine(MatCreateSeqSBAIJ,(PetscInt bs,PetscInt m,PetscInt n,const PetscInt nnz[],Mat *A),(PETSC_COMM_SELF,bs,m,n,0,nnz,A)) 283 PetscPolymorphicSubroutine(MatCreateSeqSBAIJ,(PetscInt bs,PetscInt m,PetscInt n,Mat *A),(PETSC_COMM_SELF,bs,m,n,0,PETSC_NULL,A)) 284 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatCreateMPISBAIJ(MPI_Comm,PetscInt,PetscInt,PetscInt,PetscInt,PetscInt,PetscInt,const PetscInt[],PetscInt,const PetscInt[],Mat*); 285 PetscPolymorphicFunction(MatCreateMPISBAIJ,(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscInt nz,const PetscInt nnz[],PetscInt onz,const PetscInt onnz[]),(comm,bs,m,n,M,N,nz,nnz,onz,onnz,&A),Mat,A) 286 PetscPolymorphicFunction(MatCreateMPISBAIJ,(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscInt nz,PetscInt nnz),(comm,bs,m,n,M,N,nz,PETSC_NULL,nnz,PETSC_NULL,&A),Mat,A) 287 PetscPolymorphicFunction(MatCreateMPISBAIJ,(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,const PetscInt nnz[],const PetscInt onz[]),(comm,bs,m,n,M,N,0,nnz,0,onz,&A),Mat,A) 288 PetscPolymorphicFunction(MatCreateMPISBAIJ,(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N),(comm,bs,m,n,M,N,0,PETSC_NULL,0,PETSC_NULL,&A),Mat,A) 289 PetscPolymorphicSubroutine(MatCreateMPISBAIJ,(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscInt nz,PetscInt nnz,Mat *A),(comm,bs,m,n,M,N,nz,PETSC_NULL,nnz,PETSC_NULL,A)) 290 PetscPolymorphicSubroutine(MatCreateMPISBAIJ,(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,const PetscInt nnz[],const PetscInt onz[],Mat *A),(comm,bs,m,n,M,N,0,nnz,0,onz,A)) 291 PetscPolymorphicSubroutine(MatCreateMPISBAIJ,(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,Mat *A),(comm,bs,m,n,M,N,0,PETSC_NULL,0,PETSC_NULL,A)) 292 PetscPolymorphicFunction(MatCreateMPISBAIJ,(PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscInt nz,const PetscInt nnz[],PetscInt onz,const PetscInt onnz[]),(PETSC_COMM_WORLD,bs,m,n,M,N,nz,nnz,onz,onnz,&A),Mat,A) 293 PetscPolymorphicFunction(MatCreateMPISBAIJ,(PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscInt nz,PetscInt nnz),(PETSC_COMM_WORLD,bs,m,n,M,N,nz,PETSC_NULL,nnz,PETSC_NULL,&A),Mat,A) 294 PetscPolymorphicFunction(MatCreateMPISBAIJ,(PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,const PetscInt nnz[],const PetscInt onz[]),(PETSC_COMM_WORLD,bs,m,n,M,N,0,nnz,0,onz,&A),Mat,A) 295 PetscPolymorphicFunction(MatCreateMPISBAIJ,(PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N),(PETSC_COMM_WORLD,bs,m,n,M,N,0,PETSC_NULL,0,PETSC_NULL,&A),Mat,A) 296 PetscPolymorphicSubroutine(MatCreateMPISBAIJ,(PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscInt nz,PetscInt nnz,Mat *A),(PETSC_COMM_WORLD,bs,m,n,M,N,nz,PETSC_NULL,nnz,PETSC_NULL,A)) 297 PetscPolymorphicSubroutine(MatCreateMPISBAIJ,(PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,const PetscInt nnz[],const PetscInt onz[],Mat *A),(PETSC_COMM_WORLD,bs,m,n,M,N,0,nnz,0,onz,A)) 298 PetscPolymorphicSubroutine(MatCreateMPISBAIJ,(PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,Mat *A),(PETSC_COMM_WORLD,bs,m,n,M,N,0,PETSC_NULL,0,PETSC_NULL,A)) 299 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatCreateShell(MPI_Comm,PetscInt,PetscInt,PetscInt,PetscInt,void *,Mat*); 300 PetscPolymorphicFunction(MatCreateShell,(MPI_Comm comm,PetscInt m,PetscInt n,PetscInt M,PetscInt N,void *ctx),(comm,m,n,M,N,ctx,&A),Mat,A) 301 PetscPolymorphicFunction(MatCreateShell,(PetscInt m,PetscInt n,PetscInt M,PetscInt N,void *ctx),(PETSC_COMM_WORLD,m,n,M,N,ctx,&A),Mat,A) 302 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatCreateAdic(MPI_Comm,PetscInt,PetscInt,PetscInt,PetscInt,PetscInt,void (*)(void),Mat*); 303 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatCreateNormal(Mat,Mat*); 304 PetscPolymorphicFunction(MatCreateNormal,(Mat mat),(mat,&A),Mat,A) 305 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatCreateLRC(Mat,Mat,Mat,Mat*); 306 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatCreateIS(MPI_Comm,PetscInt,PetscInt,PetscInt,PetscInt,ISLocalToGlobalMapping,Mat*); 307 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatCreateSeqCRL(MPI_Comm,PetscInt,PetscInt,PetscInt,const PetscInt[],Mat*); 308 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatCreateMPICRL(MPI_Comm,PetscInt,PetscInt,PetscInt,const PetscInt[],PetscInt,const PetscInt[],Mat*); 309 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatCreateScatter(MPI_Comm,VecScatter,Mat*); 310 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatScatterSetVecScatter(Mat,VecScatter); 311 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatScatterGetVecScatter(Mat,VecScatter*); 312 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatCreateBlockMat(MPI_Comm,PetscInt,PetscInt,PetscInt,PetscInt,PetscInt*,Mat*); 313 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatCompositeAddMat(Mat,Mat); 314 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatCompositeMerge(Mat); 315 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatCreateComposite(MPI_Comm,PetscInt,const Mat*,Mat*); 316 typedef enum {MAT_COMPOSITE_ADDITIVE,MAT_COMPOSITE_MULTIPLICATIVE} MatCompositeType; 317 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatCompositeSetType(Mat,MatCompositeType); 318 319 typedef enum {MATFWK_BLOCK_COMM_DEFAULT = 0, MATFWK_BLOCK_COMM_SELF = -1, MATFWK_BLOCK_COMM_DETERMINE = -2} MatFwkBlockCommType; 320 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatFwkAIJSetPreallocation(Mat A,PetscInt nz,PetscInt *nnz); 321 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatFwkGetDefaltBlockType(Mat A, const MatType *type); 322 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatFwkSetDefaltBlockType(Mat A, const MatType type); 323 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatFwkSetPreallocation_AIJ(Mat A,PetscInt nz,PetscInt *nnz); 324 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatFwkAddBlock(Mat A, PetscInt rowblock, PetscInt colblock, const MatType blockmattype, MatFwkBlockCommType blockcommtype, Mat *block); 325 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatFwkSetBlock(Mat A, PetscInt rowblock, PetscInt colblock, Mat block); 326 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatFwkGetBlock(Mat A, PetscInt rowblock, PetscInt colblock, Mat *block); 327 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatFwkSetScatters(Mat A, PetscInt blockcount, Mat scatters[]); 328 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatFwkSetGathers(Mat A, PetscInt blockcount, Mat gathers[]); 329 330 331 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatCreateSeqFFTW(MPI_Comm,PetscInt,const PetscInt[],Mat*); 332 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatCreateTranspose(Mat,Mat*); 333 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatCreateSubMatrix(Mat,IS,IS,Mat*); 334 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatSubMatrixUpdate(Mat,Mat,IS,IS); 335 336 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatCreatePython(MPI_Comm,PetscInt,PetscInt,PetscInt,PetscInt,const char[],Mat*); 337 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatPythonSetType(Mat,const char[]); 338 339 340 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatSetUp(Mat); 341 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatDestroy(Mat); 342 343 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatConjugate(Mat); 344 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatRealPart(Mat); 345 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatImaginaryPart(Mat); 346 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatGetDiagonalBlock(Mat,PetscTruth*,MatReuse,Mat*); 347 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatGetTrace(Mat,PetscScalar*); 348 349 /* ------------------------------------------------------------*/ 350 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatSetValues(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode); 351 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatSetValuesBlocked(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode); 352 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatSetValuesRow(Mat,PetscInt,const PetscScalar[]); 353 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatSetValuesRowLocal(Mat,PetscInt,const PetscScalar[]); 354 355 /*S 356 MatStencil - Data structure (C struct) for storing information about a single row or 357 column of a matrix as index on an associated grid. 358 359 Level: beginner 360 361 Concepts: matrix; linear operator 362 363 .seealso: MatSetValuesStencil(), MatSetStencil(), MatSetValuesBlockStencil() 364 S*/ 365 typedef struct { 366 PetscInt k,j,i,c; 367 } MatStencil; 368 369 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatSetValuesStencil(Mat,PetscInt,const MatStencil[],PetscInt,const MatStencil[],const PetscScalar[],InsertMode); 370 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatSetValuesBlockedStencil(Mat,PetscInt,const MatStencil[],PetscInt,const MatStencil[],const PetscScalar[],InsertMode); 371 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatSetStencil(Mat,PetscInt,const PetscInt[],const PetscInt[],PetscInt); 372 373 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatSetColoring(Mat,ISColoring); 374 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatSetValuesAdic(Mat,void*); 375 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatSetValuesAdifor(Mat,PetscInt,void*); 376 377 /*E 378 MatAssemblyType - Indicates if the matrix is now to be used, or if you plan 379 to continue to add values to it 380 381 Level: beginner 382 383 .seealso: MatAssemblyBegin(), MatAssemblyEnd() 384 E*/ 385 typedef enum {MAT_FLUSH_ASSEMBLY=1,MAT_FINAL_ASSEMBLY=0} MatAssemblyType; 386 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatAssemblyBegin(Mat,MatAssemblyType); 387 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatAssemblyEnd(Mat,MatAssemblyType); 388 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatAssembled(Mat,PetscTruth*); 389 390 391 392 /*E 393 MatOption - Options that may be set for a matrix and its behavior or storage 394 395 Level: beginner 396 397 Any additions/changes here MUST also be made in include/finclude/petscmat.h 398 399 .seealso: MatSetOption() 400 E*/ 401 typedef enum {MAT_ROW_ORIENTED,MAT_NEW_NONZERO_LOCATIONS, 402 MAT_SYMMETRIC, 403 MAT_STRUCTURALLY_SYMMETRIC, 404 MAT_NEW_DIAGONALS,MAT_IGNORE_OFF_PROC_ENTRIES, 405 MAT_NEW_NONZERO_LOCATION_ERR, 406 MAT_NEW_NONZERO_ALLOCATION_ERR,MAT_USE_HASH_TABLE, 407 MAT_KEEP_NONZERO_PATTERN,MAT_IGNORE_ZERO_ENTRIES, 408 MAT_USE_INODES, 409 MAT_HERMITIAN, 410 MAT_SYMMETRY_ETERNAL, 411 MAT_USE_COMPRESSEDROW, 412 MAT_IGNORE_LOWER_TRIANGULAR,MAT_ERROR_LOWER_TRIANGULAR, 413 MAT_GETROW_UPPERTRIANGULAR,MAT_UNUSED_NONZERO_LOCATION_ERR, 414 NUM_MAT_OPTIONS} MatOption; 415 extern const char *MatOptions[]; 416 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatSetOption(Mat,MatOption,PetscTruth); 417 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatGetType(Mat,const MatType*); 418 PetscPolymorphicFunction(MatGetType,(Mat mat),(mat,&t),const MatType,t) 419 420 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatGetValues(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],PetscScalar[]); 421 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatGetRow(Mat,PetscInt,PetscInt *,const PetscInt *[],const PetscScalar*[]); 422 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatRestoreRow(Mat,PetscInt,PetscInt *,const PetscInt *[],const PetscScalar*[]); 423 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatGetRowUpperTriangular(Mat); 424 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatRestoreRowUpperTriangular(Mat); 425 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatGetColumn(Mat,PetscInt,PetscInt *,const PetscInt *[],const PetscScalar*[]); 426 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatRestoreColumn(Mat,PetscInt,PetscInt *,const PetscInt *[],const PetscScalar*[]); 427 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatGetColumnVector(Mat,Vec,PetscInt); 428 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatGetArray(Mat,PetscScalar *[]); 429 PetscPolymorphicFunction(MatGetArray,(Mat mat),(mat,&a),PetscScalar*,a) 430 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatRestoreArray(Mat,PetscScalar *[]); 431 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatGetBlockSize(Mat,PetscInt *); 432 PetscPolymorphicFunction(MatGetBlockSize,(Mat mat),(mat,&a),PetscInt,a) 433 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatSetBlockSize(Mat,PetscInt); 434 435 436 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatMult(Mat,Vec,Vec); 437 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatMultDiagonalBlock(Mat,Vec,Vec); 438 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatMultAdd(Mat,Vec,Vec,Vec); 439 PetscPolymorphicSubroutine(MatMultAdd,(Mat A,Vec x,Vec y),(A,x,y,y)) 440 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatMultTranspose(Mat,Vec,Vec); 441 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatMultHermitianTranspose(Mat,Vec,Vec); 442 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatIsTranspose(Mat,Mat,PetscReal,PetscTruth*); 443 PetscPolymorphicFunction(MatIsTranspose,(Mat A,Mat B,PetscReal tol),(A,B,tol,&t),PetscTruth,t) 444 PetscPolymorphicFunction(MatIsTranspose,(Mat A,Mat B),(A,B,0,&t),PetscTruth,t) 445 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatIsHermitianTranspose(Mat,Mat,PetscReal,PetscTruth*); 446 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatMultTransposeAdd(Mat,Vec,Vec,Vec); 447 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatMultHermitianTransposeAdd(Mat,Vec,Vec,Vec); 448 PetscPolymorphicSubroutine(MatMultTransposeAdd,(Mat A,Vec x,Vec y),(A,x,y,y)) 449 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatMultConstrained(Mat,Vec,Vec); 450 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatMultTransposeConstrained(Mat,Vec,Vec); 451 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatMatSolve(Mat,Mat,Mat); 452 453 /*E 454 MatDuplicateOption - Indicates if a duplicated sparse matrix should have 455 its numerical values copied over or just its nonzero structure. 456 457 Level: beginner 458 459 Any additions/changes here MUST also be made in include/finclude/petscmat.h 460 461 $ MAT_SHARE_NONZERO_PATTERN - the i and j arrays in the new matrix will be shared with the original matrix 462 $ this also triggers the MAT_DO_NOT_COPY_VALUES option. This is used when you 463 $ have several matrices with the same nonzero pattern. 464 465 .seealso: MatDuplicate() 466 E*/ 467 typedef enum {MAT_DO_NOT_COPY_VALUES,MAT_COPY_VALUES,MAT_SHARE_NONZERO_PATTERN} MatDuplicateOption; 468 469 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatConvert(Mat,const MatType,MatReuse,Mat*); 470 PetscPolymorphicFunction(MatConvert,(Mat A,const MatType t),(A,t,MAT_INITIAL_MATRIX,&a),Mat,a) 471 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatDuplicate(Mat,MatDuplicateOption,Mat*); 472 PetscPolymorphicFunction(MatDuplicate,(Mat A,MatDuplicateOption o),(A,o,&a),Mat,a) 473 PetscPolymorphicFunction(MatDuplicate,(Mat A),(A,MAT_COPY_VALUES,&a),Mat,a) 474 475 476 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatCopy(Mat,Mat,MatStructure); 477 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatView(Mat,PetscViewer); 478 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatIsSymmetric(Mat,PetscReal,PetscTruth*); 479 PetscPolymorphicFunction(MatIsSymmetric,(Mat A,PetscReal tol),(A,tol,&t),PetscTruth,t) 480 PetscPolymorphicFunction(MatIsSymmetric,(Mat A),(A,0,&t),PetscTruth,t) 481 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatIsStructurallySymmetric(Mat,PetscTruth*); 482 PetscPolymorphicFunction(MatIsStructurallySymmetric,(Mat A),(A,&t),PetscTruth,t) 483 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatIsHermitian(Mat,PetscReal,PetscTruth*); 484 PetscPolymorphicFunction(MatIsHermitian,(Mat A),(A,0,&t),PetscTruth,t) 485 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatIsSymmetricKnown(Mat,PetscTruth*,PetscTruth*); 486 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatIsHermitianKnown(Mat,PetscTruth*,PetscTruth*); 487 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatMissingDiagonal(Mat,PetscTruth *,PetscInt *); 488 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatLoad(PetscViewer,const MatType,Mat*); 489 PetscPolymorphicFunction(MatLoad,(PetscViewer v,const MatType t),(v,t,&a),Mat,a) 490 491 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatGetRowIJ(Mat,PetscInt,PetscTruth,PetscTruth,PetscInt*,PetscInt *[],PetscInt *[],PetscTruth *); 492 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatRestoreRowIJ(Mat,PetscInt,PetscTruth,PetscTruth,PetscInt *,PetscInt *[],PetscInt *[],PetscTruth *); 493 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatGetColumnIJ(Mat,PetscInt,PetscTruth,PetscTruth,PetscInt*,PetscInt *[],PetscInt *[],PetscTruth *); 494 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatRestoreColumnIJ(Mat,PetscInt,PetscTruth,PetscTruth,PetscInt *,PetscInt *[],PetscInt *[],PetscTruth *); 495 496 /*S 497 MatInfo - Context of matrix information, used with MatGetInfo() 498 499 In Fortran this is simply a double precision array of dimension MAT_INFO_SIZE 500 501 Level: intermediate 502 503 Concepts: matrix^nonzero information 504 505 .seealso: MatGetInfo(), MatInfoType 506 S*/ 507 typedef struct { 508 PetscLogDouble block_size; /* block size */ 509 PetscLogDouble nz_allocated,nz_used,nz_unneeded; /* number of nonzeros */ 510 PetscLogDouble memory; /* memory allocated */ 511 PetscLogDouble assemblies; /* number of matrix assemblies called */ 512 PetscLogDouble mallocs; /* number of mallocs during MatSetValues() */ 513 PetscLogDouble fill_ratio_given,fill_ratio_needed; /* fill ratio for LU/ILU */ 514 PetscLogDouble factor_mallocs; /* number of mallocs during factorization */ 515 } MatInfo; 516 517 /*E 518 MatInfoType - Indicates if you want information about the local part of the matrix, 519 the entire parallel matrix or the maximum over all the local parts. 520 521 Level: beginner 522 523 Any additions/changes here MUST also be made in include/finclude/petscmat.h 524 525 .seealso: MatGetInfo(), MatInfo 526 E*/ 527 typedef enum {MAT_LOCAL=1,MAT_GLOBAL_MAX=2,MAT_GLOBAL_SUM=3} MatInfoType; 528 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatGetInfo(Mat,MatInfoType,MatInfo*); 529 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatValid(Mat,PetscTruth*); 530 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatGetDiagonal(Mat,Vec); 531 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatGetRowMax(Mat,Vec,PetscInt[]); 532 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatGetRowMin(Mat,Vec,PetscInt[]); 533 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatGetRowMaxAbs(Mat,Vec,PetscInt[]); 534 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatGetRowMinAbs(Mat,Vec,PetscInt[]); 535 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatGetRowSum(Mat,Vec); 536 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatTranspose(Mat,MatReuse,Mat*); 537 PetscPolymorphicFunction(MatTranspose,(Mat A),(A,MAT_INITIAL_MATRIX,&t),Mat,t) 538 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatHermitianTranspose(Mat,MatReuse,Mat*); 539 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatPermute(Mat,IS,IS,Mat *); 540 PetscPolymorphicFunction(MatPermute,(Mat A,IS is1,IS is2),(A,is1,is2,&t),Mat,t) 541 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatPermuteSparsify(Mat,PetscInt,PetscReal,PetscReal,IS,IS,Mat *); 542 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatDiagonalScale(Mat,Vec,Vec); 543 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatDiagonalSet(Mat,Vec,InsertMode); 544 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatEqual(Mat,Mat,PetscTruth*); 545 PetscPolymorphicFunction(MatEqual,(Mat A,Mat B),(A,B,&t),PetscTruth,t) 546 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatMultEqual(Mat,Mat,PetscInt,PetscTruth*); 547 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatMultAddEqual(Mat,Mat,PetscInt,PetscTruth*); 548 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatMultTransposeEqual(Mat,Mat,PetscInt,PetscTruth*); 549 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatMultTransposeAddEqual(Mat,Mat,PetscInt,PetscTruth*); 550 551 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatNorm(Mat,NormType,PetscReal *); 552 PetscPolymorphicFunction(MatNorm,(Mat A,NormType t),(A,t,&n),PetscReal,n) 553 EXTERN PetscErrorCode MatGetColumnNorms(Mat,NormType,PetscReal *); 554 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatZeroEntries(Mat); 555 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatZeroRows(Mat,PetscInt,const PetscInt [],PetscScalar); 556 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatZeroRowsIS(Mat,IS,PetscScalar); 557 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatZeroColumns(Mat,PetscInt,const PetscInt [],const PetscScalar*); 558 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatZeroColumnsIS(Mat,IS,const PetscScalar*); 559 560 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatUseScaledForm(Mat,PetscTruth); 561 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatScaleSystem(Mat,Vec,Vec); 562 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatUnScaleSystem(Mat,Vec,Vec); 563 564 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatGetSize(Mat,PetscInt*,PetscInt*); 565 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatGetLocalSize(Mat,PetscInt*,PetscInt*); 566 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatGetOwnershipRange(Mat,PetscInt*,PetscInt*); 567 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatGetOwnershipRanges(Mat,const PetscInt**); 568 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatGetOwnershipRangeColumn(Mat,PetscInt*,PetscInt*); 569 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatGetOwnershipRangesColumn(Mat,const PetscInt**); 570 571 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatGetSubMatrices(Mat,PetscInt,const IS[],const IS[],MatReuse,Mat *[]); 572 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatDestroyMatrices(PetscInt,Mat *[]); 573 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatGetSubMatrix(Mat,IS,IS,MatReuse,Mat *); 574 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatGetSeqNonzeroStructure(Mat,Mat*); 575 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatDestroySeqNonzeroStructure(Mat*); 576 577 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatMerge(MPI_Comm,Mat,PetscInt,MatReuse,Mat*); 578 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatMerge_SeqsToMPI(MPI_Comm,Mat,PetscInt,PetscInt,MatReuse,Mat*); 579 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatMerge_SeqsToMPISymbolic(MPI_Comm,Mat,PetscInt,PetscInt,Mat*); 580 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatMerge_SeqsToMPINumeric(Mat,Mat); 581 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatDestroy_MPIAIJ_SeqsToMPI(Mat); 582 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatGetLocalMat(Mat,MatReuse,Mat*); 583 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatGetLocalMatCondensed(Mat,MatReuse,IS*,IS*,Mat*); 584 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatGetBrowsOfAcols(Mat,Mat,MatReuse,IS*,IS*,PetscInt*,Mat*); 585 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatGetBrowsOfAoCols(Mat,Mat,MatReuse,PetscInt**,PetscInt**,MatScalar**,Mat*); 586 #if defined (PETSC_USE_CTABLE) 587 #include "petscctable.h" 588 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatGetCommunicationStructs(Mat, Vec *, PetscTable *, VecScatter *); 589 #else 590 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatGetCommunicationStructs(Mat, Vec *, PetscInt *[], VecScatter *); 591 #endif 592 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatGetGhosts(Mat, PetscInt *,const PetscInt *[]); 593 594 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatIncreaseOverlap(Mat,PetscInt,IS[],PetscInt); 595 596 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatMatMult(Mat,Mat,MatReuse,PetscReal,Mat*); 597 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatMatMultSymbolic(Mat,Mat,PetscReal,Mat*); 598 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatMatMultNumeric(Mat,Mat,Mat); 599 600 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatPtAP(Mat,Mat,MatReuse,PetscReal,Mat*); 601 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatPtAPSymbolic(Mat,Mat,PetscReal,Mat*); 602 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatPtAPNumeric(Mat,Mat,Mat); 603 604 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatMatMultTranspose(Mat,Mat,MatReuse,PetscReal,Mat*); 605 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatMatMultTransposeSymbolic(Mat,Mat,PetscReal,Mat*); 606 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatMatMultTransposeNumeric(Mat,Mat,Mat); 607 608 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatAXPY(Mat,PetscScalar,Mat,MatStructure); 609 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatAYPX(Mat,PetscScalar,Mat,MatStructure); 610 611 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatScale(Mat,PetscScalar); 612 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatShift(Mat,PetscScalar); 613 614 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatSetLocalToGlobalMapping(Mat,ISLocalToGlobalMapping); 615 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatSetLocalToGlobalMappingBlock(Mat,ISLocalToGlobalMapping); 616 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatZeroRowsLocal(Mat,PetscInt,const PetscInt [],PetscScalar); 617 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatZeroRowsLocalIS(Mat,IS,PetscScalar); 618 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatSetValuesLocal(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode); 619 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatSetValuesBlockedLocal(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode); 620 621 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatStashSetInitialSize(Mat,PetscInt,PetscInt); 622 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatStashGetInfo(Mat,PetscInt*,PetscInt*,PetscInt*,PetscInt*); 623 624 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatInterpolate(Mat,Vec,Vec); 625 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatInterpolateAdd(Mat,Vec,Vec,Vec); 626 PetscPolymorphicSubroutine(MatInterpolateAdd,(Mat A,Vec x,Vec y),(A,x,y,y)) 627 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatRestrict(Mat,Vec,Vec); 628 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatGetVecs(Mat,Vec*,Vec*); 629 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatGetRedundantMatrix(Mat,PetscInt,MPI_Comm,PetscInt,MatReuse,Mat*); 630 631 /*MC 632 MatSetValue - Set a single entry into a matrix. 633 634 Not collective 635 636 Input Parameters: 637 + m - the matrix 638 . row - the row location of the entry 639 . col - the column location of the entry 640 . value - the value to insert 641 - mode - either INSERT_VALUES or ADD_VALUES 642 643 Notes: 644 For efficiency one should use MatSetValues() and set several or many 645 values simultaneously if possible. 646 647 Level: beginner 648 649 .seealso: MatSetValues(), MatSetValueLocal() 650 M*/ 651 PETSC_STATIC_INLINE PetscErrorCode MatSetValue(Mat v,PetscInt i,PetscInt j,PetscScalar va,InsertMode mode) {return MatSetValues(v,1,&i,1,&j,&va,mode);} 652 653 PETSC_STATIC_INLINE PetscErrorCode MatGetValue(Mat v,PetscInt i,PetscInt j,PetscScalar *va) {return MatGetValues(v,1,&i,1,&j,va);} 654 655 PETSC_STATIC_INLINE PetscErrorCode MatSetValueLocal(Mat v,PetscInt i,PetscInt j,PetscScalar va,InsertMode mode) {return MatSetValuesLocal(v,1,&i,1,&j,&va,mode);} 656 657 /*MC 658 MatPreallocateInitialize - Begins the block of code that will count the number of nonzeros per 659 row in a matrix providing the data that one can use to correctly preallocate the matrix. 660 661 Synopsis: 662 PetscErrorCode MatPreallocateInitialize(MPI_Comm comm, PetscInt nrows, PetscInt ncols, PetscInt *dnz, PetscInt *onz) 663 664 Collective on MPI_Comm 665 666 Input Parameters: 667 + comm - the communicator that will share the eventually allocated matrix 668 . nrows - the number of LOCAL rows in the matrix 669 - ncols - the number of LOCAL columns in the matrix 670 671 Output Parameters: 672 + dnz - the array that will be passed to the matrix preallocation routines 673 - ozn - the other array passed to the matrix preallocation routines 674 675 676 Level: intermediate 677 678 Notes: 679 See the chapter in the users manual on performance for more details 680 681 Do not malloc or free dnz and onz, that is handled internally by these routines 682 683 Use MatPreallocateInitializeSymmetric() for symmetric matrices (MPISBAIJ matrices) 684 685 This is a MACRO not a function because it has a leading { that is closed by PetscPreallocateFinalize(). 686 687 Concepts: preallocation^Matrix 688 689 .seealso: MatPreallocateFinalize(), MatPreallocateSet(), MatPreallocateSymmetricSet(), MatPreallocateSetLocal(), 690 MatPreallocateInitializeSymmetric(), MatPreallocateSymmetricSetLocal() 691 M*/ 692 #define MatPreallocateInitialize(comm,nrows,ncols,dnz,onz) 0; \ 693 { \ 694 PetscErrorCode _4_ierr; PetscInt __nrows = (nrows),__ctmp = (ncols),__rstart,__start,__end; \ 695 _4_ierr = PetscMalloc2(__nrows,PetscInt,&dnz,__nrows,PetscInt,&onz);CHKERRQ(_4_ierr); \ 696 _4_ierr = PetscMemzero(dnz,__nrows*sizeof(PetscInt));CHKERRQ(_4_ierr);\ 697 _4_ierr = PetscMemzero(onz,__nrows*sizeof(PetscInt));CHKERRQ(_4_ierr);\ 698 _4_ierr = MPI_Scan(&__ctmp,&__end,1,MPIU_INT,MPI_SUM,comm);CHKERRQ(_4_ierr); __start = __end - __ctmp;\ 699 _4_ierr = MPI_Scan(&__nrows,&__rstart,1,MPIU_INT,MPI_SUM,comm);CHKERRQ(_4_ierr); __rstart = __rstart - __nrows; 700 701 /*MC 702 MatPreallocateSymmetricInitialize - Begins the block of code that will count the number of nonzeros per 703 row in a matrix providing the data that one can use to correctly preallocate the matrix. 704 705 Synopsis: 706 PetscErrorCode MatPreallocateSymmetricInitialize(MPI_Comm comm, PetscInt nrows, PetscInt ncols, PetscInt *dnz, PetscInt *onz) 707 708 Collective on MPI_Comm 709 710 Input Parameters: 711 + comm - the communicator that will share the eventually allocated matrix 712 . nrows - the number of LOCAL rows in the matrix 713 - ncols - the number of LOCAL columns in the matrix 714 715 Output Parameters: 716 + dnz - the array that will be passed to the matrix preallocation routines 717 - ozn - the other array passed to the matrix preallocation routines 718 719 720 Level: intermediate 721 722 Notes: 723 See the chapter in the users manual on performance for more details 724 725 Do not malloc or free dnz and onz, that is handled internally by these routines 726 727 This is a MACRO not a function because it has a leading { that is closed by PetscPreallocateFinalize(). 728 729 Concepts: preallocation^Matrix 730 731 .seealso: MatPreallocateFinalize(), MatPreallocateSet(), MatPreallocateSymmetricSet(), MatPreallocateSetLocal(), 732 MatPreallocateInitialize(), MatPreallocateSymmetricSetLocal() 733 M*/ 734 #define MatPreallocateSymmetricInitialize(comm,nrows,ncols,dnz,onz) 0; \ 735 { \ 736 PetscErrorCode _4_ierr; PetscInt __nrows = (nrows),__ctmp = (ncols),__rstart,__end; \ 737 _4_ierr = PetscMalloc2(__nrows,PetscInt,&dnz,__nrows,PetscInt,&onz);CHKERRQ(_4_ierr); \ 738 _4_ierr = PetscMemzero(dnz,__nrows*sizeof(PetscInt));CHKERRQ(_4_ierr);\ 739 _4_ierr = PetscMemzero(onz,__nrows*sizeof(PetscInt));CHKERRQ(_4_ierr);\ 740 _4_ierr = MPI_Scan(&__ctmp,&__end,1,MPIU_INT,MPI_SUM,comm);CHKERRQ(_4_ierr);\ 741 _4_ierr = MPI_Scan(&__nrows,&__rstart,1,MPIU_INT,MPI_SUM,comm);CHKERRQ(_4_ierr); __rstart = __rstart - __nrows; 742 743 /*MC 744 MatPreallocateSetLocal - Indicates the locations (rows and columns) in the matrix where nonzeros will be 745 inserted using a local number of the rows and columns 746 747 Synopsis: 748 PetscErrorCode MatPreallocateSetLocal(ISLocalToGlobalMappping map,PetscInt nrows, PetscInt *rows,PetscInt ncols, PetscInt *cols,PetscInt *dnz, PetscInt *onz) 749 750 Not Collective 751 752 Input Parameters: 753 + map - the mapping between local numbering and global numbering 754 . nrows - the number of rows indicated 755 . rows - the indices of the rows 756 . ncols - the number of columns in the matrix 757 . cols - the columns indicated 758 . dnz - the array that will be passed to the matrix preallocation routines 759 - ozn - the other array passed to the matrix preallocation routines 760 761 762 Level: intermediate 763 764 Notes: 765 See the chapter in the users manual on performance for more details 766 767 Do not malloc or free dnz and onz, that is handled internally by these routines 768 769 Concepts: preallocation^Matrix 770 771 .seealso: MatPreallocateFinalize(), MatPreallocateSet(), MatPreallocateSymmetricSet(), MatPreallocateInitialize(), 772 MatPreallocateInitialize(), MatPreallocateSymmetricSetLocal() 773 M*/ 774 #define MatPreallocateSetLocal(map,nrows,rows,ncols,cols,dnz,onz) 0;\ 775 {\ 776 PetscInt __l;\ 777 _4_ierr = ISLocalToGlobalMappingApply(map,nrows,rows,rows);CHKERRQ(_4_ierr);\ 778 _4_ierr = ISLocalToGlobalMappingApply(map,ncols,cols,cols);CHKERRQ(_4_ierr);\ 779 for (__l=0;__l<nrows;__l++) {\ 780 _4_ierr = MatPreallocateSet((rows)[__l],ncols,cols,dnz,onz);CHKERRQ(_4_ierr);\ 781 }\ 782 } 783 784 /*MC 785 MatPreallocateSymmetricSetLocal - Indicates the locations (rows and columns) in the matrix where nonzeros will be 786 inserted using a local number of the rows and columns 787 788 Synopsis: 789 PetscErrorCode MatPreallocateSymmetricSetLocal(ISLocalToGlobalMappping map,PetscInt nrows, PetscInt *rows,PetscInt ncols, PetscInt *cols,PetscInt *dnz, PetscInt *onz) 790 791 Not Collective 792 793 Input Parameters: 794 + map - the mapping between local numbering and global numbering 795 . nrows - the number of rows indicated 796 . rows - the indices of the rows 797 . ncols - the number of columns in the matrix 798 . cols - the columns indicated 799 . dnz - the array that will be passed to the matrix preallocation routines 800 - ozn - the other array passed to the matrix preallocation routines 801 802 803 Level: intermediate 804 805 Notes: 806 See the chapter in the users manual on performance for more details 807 808 Do not malloc or free dnz and onz that is handled internally by these routines 809 810 Concepts: preallocation^Matrix 811 812 .seealso: MatPreallocateFinalize(), MatPreallocateSet(), MatPreallocateSymmetricSet(), MatPreallocateInitialize(), 813 MatPreallocateInitialize(), MatPreallocateSymmetricSetLocal(), MatPreallocateSetLocal() 814 M*/ 815 #define MatPreallocateSymmetricSetLocal(map,nrows,rows,ncols,cols,dnz,onz) 0;\ 816 {\ 817 PetscInt __l;\ 818 _4_ierr = ISLocalToGlobalMappingApply(map,nrows,rows,rows);CHKERRQ(_4_ierr);\ 819 _4_ierr = ISLocalToGlobalMappingApply(map,ncols,cols,cols);CHKERRQ(_4_ierr);\ 820 for (__l=0;__l<nrows;__l++) {\ 821 _4_ierr = MatPreallocateSymmetricSet((rows)[__l],ncols,cols,dnz,onz);CHKERRQ(_4_ierr);\ 822 }\ 823 } 824 825 /*MC 826 MatPreallocateSet - Indicates the locations (rows and columns) in the matrix where nonzeros will be 827 inserted using a local number of the rows and columns 828 829 Synopsis: 830 PetscErrorCode MatPreallocateSet(PetscInt nrows, PetscInt *rows,PetscInt ncols, PetscInt *cols,PetscInt *dnz, PetscInt *onz) 831 832 Not Collective 833 834 Input Parameters: 835 + row - the row 836 . ncols - the number of columns in the matrix 837 - cols - the columns indicated 838 839 Output Parameters: 840 + dnz - the array that will be passed to the matrix preallocation routines 841 - ozn - the other array passed to the matrix preallocation routines 842 843 844 Level: intermediate 845 846 Notes: 847 See the chapter in the users manual on performance for more details 848 849 Do not malloc or free dnz and onz that is handled internally by these routines 850 851 This is a MACRO not a function because it uses variables declared in MatPreallocateInitialize(). 852 853 Concepts: preallocation^Matrix 854 855 .seealso: MatPreallocateFinalize(), MatPreallocateSet(), MatPreallocateSymmetricSet(), MatPreallocateInitialize(), 856 MatPreallocateInitialize(), MatPreallocateSymmetricSetLocal(), MatPreallocateSetLocal() 857 M*/ 858 #define MatPreallocateSet(row,nc,cols,dnz,onz) 0;\ 859 { PetscInt __i; \ 860 if (row < __rstart) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Trying to set preallocation for row %D less than first local row %D",row,__rstart);\ 861 if (row >= __rstart+__nrows) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Trying to set preallocation for row %D greater than last local row %D",row,__rstart+__nrows-1);\ 862 for (__i=0; __i<nc; __i++) {\ 863 if ((cols)[__i] < __start || (cols)[__i] >= __end) onz[row - __rstart]++; \ 864 else dnz[row - __rstart]++;\ 865 }\ 866 } 867 868 /*MC 869 MatPreallocateSymmetricSet - Indicates the locations (rows and columns) in the matrix where nonzeros will be 870 inserted using a local number of the rows and columns 871 872 Synopsis: 873 PetscErrorCode MatPreallocateSymmetricSet(PetscInt nrows, PetscInt *rows,PetscInt ncols, PetscInt *cols,PetscInt *dnz, PetscInt *onz) 874 875 Not Collective 876 877 Input Parameters: 878 + nrows - the number of rows indicated 879 . rows - the indices of the rows 880 . ncols - the number of columns in the matrix 881 . cols - the columns indicated 882 . dnz - the array that will be passed to the matrix preallocation routines 883 - ozn - the other array passed to the matrix preallocation routines 884 885 886 Level: intermediate 887 888 Notes: 889 See the chapter in the users manual on performance for more details 890 891 Do not malloc or free dnz and onz that is handled internally by these routines 892 893 This is a MACRO not a function because it uses variables declared in MatPreallocateInitialize(). 894 895 Concepts: preallocation^Matrix 896 897 .seealso: MatPreallocateFinalize(), MatPreallocateSet(), MatPreallocateSymmetricSet(), MatPreallocateInitialize(), 898 MatPreallocateInitialize(), MatPreallocateSymmetricSetLocal(), MatPreallocateSetLocal() 899 M*/ 900 #define MatPreallocateSymmetricSet(row,nc,cols,dnz,onz) 0;\ 901 { PetscInt __i; \ 902 for (__i=0; __i<nc; __i++) {\ 903 if (cols[__i] >= __end) onz[row - __rstart]++; \ 904 else if (cols[__i] >= row) dnz[row - __rstart]++;\ 905 }\ 906 } 907 908 /*MC 909 MatPreallocateLocation - An alternative to MatPreallocationSet() that puts the nonzero locations into the matrix if it exists 910 911 Synopsis: 912 PetscErrorCode MatPreallocateLocations(Mat A,PetscInt row,PetscInt ncols,PetscInt *cols,PetscInt *dnz,PetscInt *onz) 913 914 Not Collective 915 916 Input Parameters: 917 . A - matrix 918 . row - row where values exist (must be local to this process) 919 . ncols - number of columns 920 . cols - columns with nonzeros 921 . dnz - the array that will be passed to the matrix preallocation routines 922 - ozn - the other array passed to the matrix preallocation routines 923 924 925 Level: intermediate 926 927 Notes: 928 See the chapter in the users manual on performance for more details 929 930 Do not malloc or free dnz and onz that is handled internally by these routines 931 932 This is a MACRO not a function because it uses a bunch of variables private to the MatPreallocation.... routines. 933 934 Concepts: preallocation^Matrix 935 936 .seealso: MatPreallocateInitialize(), MatPreallocateSet(), MatPreallocateSymmetricSet(), MatPreallocateSetLocal(), 937 MatPreallocateSymmetricInitialize(), MatPreallocateSymmetricSetLocal() 938 M*/ 939 #define MatPreallocateLocation(A,row,ncols,cols,dnz,onz) 0;if (A) {ierr = MatSetValues(A,1,&row,ncols,cols,PETSC_NULL,INSERT_VALUES);CHKERRQ(ierr);} else {ierr = MatPreallocateSet(row,ncols,cols,dnz,onz);CHKERRQ(ierr);} 940 941 942 /*MC 943 MatPreallocateFinalize - Ends the block of code that will count the number of nonzeros per 944 row in a matrix providing the data that one can use to correctly preallocate the matrix. 945 946 Synopsis: 947 PetscErrorCode MatPreallocateFinalize(PetscInt *dnz, PetscInt *onz) 948 949 Collective on MPI_Comm 950 951 Input Parameters: 952 + dnz - the array that was be passed to the matrix preallocation routines 953 - ozn - the other array passed to the matrix preallocation routines 954 955 956 Level: intermediate 957 958 Notes: 959 See the chapter in the users manual on performance for more details 960 961 Do not malloc or free dnz and onz that is handled internally by these routines 962 963 This is a MACRO not a function because it closes the { started in MatPreallocateInitialize(). 964 965 Concepts: preallocation^Matrix 966 967 .seealso: MatPreallocateInitialize(), MatPreallocateSet(), MatPreallocateSymmetricSet(), MatPreallocateSetLocal(), 968 MatPreallocateSymmetricInitialize(), MatPreallocateSymmetricSetLocal() 969 M*/ 970 #define MatPreallocateFinalize(dnz,onz) 0;_4_ierr = PetscFree2(dnz,onz);CHKERRQ(_4_ierr);} 971 972 973 974 /* Routines unique to particular data structures */ 975 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatShellGetContext(Mat,void **); 976 PetscPolymorphicFunction(MatShellGetContext,(Mat A),(A,&t),void*,t) 977 978 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatInodeAdjustForInodes(Mat,IS*,IS*); 979 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatInodeGetInodeSizes(Mat,PetscInt *,PetscInt *[],PetscInt *); 980 981 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatSeqAIJSetColumnIndices(Mat,PetscInt[]); 982 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatSeqBAIJSetColumnIndices(Mat,PetscInt[]); 983 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatCreateSeqAIJWithArrays(MPI_Comm,PetscInt,PetscInt,PetscInt[],PetscInt[],PetscScalar[],Mat*); 984 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatCreateSeqBAIJWithArrays(MPI_Comm,PetscInt,PetscInt,PetscInt,PetscInt[],PetscInt[],PetscScalar[],Mat*); 985 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatCreateSeqSBAIJWithArrays(MPI_Comm,PetscInt,PetscInt,PetscInt,PetscInt[],PetscInt[],PetscScalar[],Mat*); 986 987 #define MAT_SKIP_ALLOCATION -4 988 989 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatSeqBAIJSetPreallocation(Mat,PetscInt,PetscInt,const PetscInt[]); 990 PetscPolymorphicSubroutine(MatSeqBAIJSetPreallocation,(Mat A,PetscInt bs,const PetscInt nnz[]),(A,bs,0,nnz)) 991 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatSeqSBAIJSetPreallocation(Mat,PetscInt,PetscInt,const PetscInt[]); 992 PetscPolymorphicSubroutine(MatSeqSBAIJSetPreallocation,(Mat A,PetscInt bs,const PetscInt nnz[]),(A,bs,0,nnz)) 993 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatSeqAIJSetPreallocation(Mat,PetscInt,const PetscInt[]); 994 PetscPolymorphicSubroutine(MatSeqAIJSetPreallocation,(Mat A,const PetscInt nnz[]),(A,0,nnz)) 995 996 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatMPIBAIJSetPreallocation(Mat,PetscInt,PetscInt,const PetscInt[],PetscInt,const PetscInt[]); 997 PetscPolymorphicSubroutine(MatMPIBAIJSetPreallocation,(Mat A,PetscInt bs,const PetscInt nnz[],const PetscInt onz[]),(A,bs,0,nnz,0,onz)) 998 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatMPISBAIJSetPreallocation(Mat,PetscInt,PetscInt,const PetscInt[],PetscInt,const PetscInt[]); 999 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatMPIAIJSetPreallocation(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[]); 1000 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatSeqAIJSetPreallocationCSR(Mat,const PetscInt [],const PetscInt [],const PetscScalar []); 1001 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatSeqBAIJSetPreallocationCSR(Mat,PetscInt,const PetscInt[],const PetscInt[],const PetscScalar[]); 1002 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatMPIAIJSetPreallocationCSR(Mat,const PetscInt[],const PetscInt[],const PetscScalar[]); 1003 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatMPIBAIJSetPreallocationCSR(Mat,PetscInt,const PetscInt[],const PetscInt[],const PetscScalar[]); 1004 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatMPIAdjSetPreallocation(Mat,PetscInt[],PetscInt[],PetscInt[]); 1005 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatMPIDenseSetPreallocation(Mat,PetscScalar[]); 1006 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatSeqDenseSetPreallocation(Mat,PetscScalar[]); 1007 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatMPIAIJGetSeqAIJ(Mat,Mat*,Mat*,PetscInt*[]); 1008 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatMPIBAIJGetSeqBAIJ(Mat,Mat*,Mat*,PetscInt*[]); 1009 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatAdicSetLocalFunction(Mat,void (*)(void)); 1010 1011 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatSeqDenseSetLDA(Mat,PetscInt); 1012 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatDenseGetLocalMatrix(Mat,Mat*); 1013 1014 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatStoreValues(Mat); 1015 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatRetrieveValues(Mat); 1016 1017 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatDAADSetCtx(Mat,void*); 1018 1019 /* 1020 These routines are not usually accessed directly, rather solving is 1021 done through the KSP and PC interfaces. 1022 */ 1023 1024 /*E 1025 MatOrderingType - String with the name of a PETSc matrix ordering or the creation function 1026 with an optional dynamic library name, for example 1027 http://www.mcs.anl.gov/petsc/lib.a:orderingcreate() 1028 1029 Level: beginner 1030 1031 Cannot use const because the PC objects manipulate the string 1032 1033 .seealso: MatGetOrdering() 1034 E*/ 1035 #define MatOrderingType char* 1036 #define MATORDERING_NATURAL "natural" 1037 #define MATORDERING_ND "nd" 1038 #define MATORDERING_1WD "1wd" 1039 #define MATORDERING_RCM "rcm" 1040 #define MATORDERING_QMD "qmd" 1041 #define MATORDERING_ROWLENGTH "rowlength" 1042 #define MATORDERING_DSC_ND "dsc_nd" /* these three are only for DSCPACK, see its documentation for details */ 1043 #define MATORDERING_DSC_MMD "dsc_mmd" 1044 #define MATORDERING_DSC_MDF "dsc_mdf" 1045 #define MATORDERING_CONSTRAINED "constrained" 1046 #define MATORDERING_IDENTITY "identity" 1047 #define MATORDERING_REVERSE "reverse" 1048 #define MATORDERING_FLOW "flow" 1049 #define MATORDERING_AMD "amd" 1050 1051 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatGetOrdering(Mat,const MatOrderingType,IS*,IS*); 1052 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatGetOrderingList(PetscFList *list); 1053 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatOrderingRegister(const char[],const char[],const char[],PetscErrorCode(*)(Mat,const MatOrderingType,IS*,IS*)); 1054 1055 /*MC 1056 MatOrderingRegisterDynamic - Adds a new sparse matrix ordering to the matrix package. 1057 1058 Synopsis: 1059 PetscErrorCode MatOrderingRegisterDynamic(const char *name_ordering,const char *path,const char *name_create,PetscErrorCode (*routine_create)(MatOrdering)) 1060 1061 Not Collective 1062 1063 Input Parameters: 1064 + sname - name of ordering (for example MATORDERING_ND) 1065 . path - location of library where creation routine is 1066 . name - name of function that creates the ordering type,a string 1067 - function - function pointer that creates the ordering 1068 1069 Level: developer 1070 1071 If dynamic libraries are used, then the fourth input argument (function) 1072 is ignored. 1073 1074 Sample usage: 1075 .vb 1076 MatOrderingRegisterDynamic("my_order",/home/username/my_lib/lib/libO/solaris/mylib.a, 1077 "MyOrder",MyOrder); 1078 .ve 1079 1080 Then, your partitioner can be chosen with the procedural interface via 1081 $ MatOrderingSetType(part,"my_order) 1082 or at runtime via the option 1083 $ -pc_factor_mat_ordering_type my_order 1084 1085 ${PETSC_ARCH} occuring in pathname will be replaced with appropriate values. 1086 1087 .keywords: matrix, ordering, register 1088 1089 .seealso: MatOrderingRegisterDestroy(), MatOrderingRegisterAll() 1090 M*/ 1091 #if defined(PETSC_USE_DYNAMIC_LIBRARIES) 1092 #define MatOrderingRegisterDynamic(a,b,c,d) MatOrderingRegister(a,b,c,0) 1093 #else 1094 #define MatOrderingRegisterDynamic(a,b,c,d) MatOrderingRegister(a,b,c,d) 1095 #endif 1096 1097 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatOrderingRegisterDestroy(void); 1098 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatOrderingRegisterAll(const char[]); 1099 extern PetscTruth MatOrderingRegisterAllCalled; 1100 extern PetscFList MatOrderingList; 1101 1102 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatReorderForNonzeroDiagonal(Mat,PetscReal,IS,IS); 1103 1104 /*S 1105 MatFactorShiftType - Numeric Shift. 1106 1107 Level: beginner 1108 1109 S*/ 1110 typedef enum {MAT_SHIFT_NONE,MAT_SHIFT_NONZERO,MAT_SHIFT_POSITIVE_DEFINITE,MAT_SHIFT_INBLOCKS} MatFactorShiftType; 1111 extern const char *MatFactorShiftTypes[]; 1112 1113 /*S 1114 MatFactorInfo - Data passed into the matrix factorization routines 1115 1116 In Fortran these are simply double precision arrays of size MAT_FACTORINFO_SIZE, that is use 1117 $ MatFactorInfo info(MAT_FACTORINFO_SIZE) 1118 1119 Notes: These are not usually directly used by users, instead use PC type of LU, ILU, CHOLESKY or ICC. 1120 1121 You can use MatFactorInfoInitialize() to set default values. 1122 1123 Level: developer 1124 1125 .seealso: MatLUFactorSymbolic(), MatILUFactorSymbolic(), MatCholeskyFactorSymbolic(), MatICCFactorSymbolic(), MatICCFactor(), 1126 MatFactorInfoInitialize() 1127 1128 S*/ 1129 typedef struct { 1130 PetscReal diagonal_fill; /* force diagonal to fill in if initially not filled */ 1131 PetscReal usedt; 1132 PetscReal dt; /* drop tolerance */ 1133 PetscReal dtcol; /* tolerance for pivoting */ 1134 PetscReal dtcount; /* maximum nonzeros to be allowed per row */ 1135 PetscReal fill; /* expected fill, nonzeros in factored matrix/nonzeros in original matrix */ 1136 PetscReal levels; /* ICC/ILU(levels) */ 1137 PetscReal pivotinblocks; /* for BAIJ and SBAIJ matrices pivot in factorization on blocks, default 1.0 1138 factorization may be faster if do not pivot */ 1139 PetscReal zeropivot; /* pivot is called zero if less than this */ 1140 PetscReal shifttype; /* type of shift added to matrix factor to prevent zero pivots */ 1141 PetscReal shiftamount; /* how large the shift is */ 1142 } MatFactorInfo; 1143 1144 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatFactorInfoInitialize(MatFactorInfo*); 1145 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatCholeskyFactor(Mat,IS,const MatFactorInfo*); 1146 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatCholeskyFactorSymbolic(Mat,Mat,IS,const MatFactorInfo*); 1147 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatCholeskyFactorNumeric(Mat,Mat,const MatFactorInfo*); 1148 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatLUFactor(Mat,IS,IS,const MatFactorInfo*); 1149 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatILUFactor(Mat,IS,IS,const MatFactorInfo*); 1150 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatLUFactorSymbolic(Mat,Mat,IS,IS,const MatFactorInfo*); 1151 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatILUFactorSymbolic(Mat,Mat,IS,IS,const MatFactorInfo*); 1152 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatICCFactorSymbolic(Mat,Mat,IS,const MatFactorInfo*); 1153 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatICCFactor(Mat,IS,const MatFactorInfo*); 1154 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatLUFactorNumeric(Mat,Mat,const MatFactorInfo*); 1155 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatGetInertia(Mat,PetscInt*,PetscInt*,PetscInt*); 1156 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatSolve(Mat,Vec,Vec); 1157 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatForwardSolve(Mat,Vec,Vec); 1158 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatBackwardSolve(Mat,Vec,Vec); 1159 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatSolveAdd(Mat,Vec,Vec,Vec); 1160 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatSolveTranspose(Mat,Vec,Vec); 1161 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatSolveTransposeAdd(Mat,Vec,Vec,Vec); 1162 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatSolves(Mat,Vecs,Vecs); 1163 1164 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatSetUnfactored(Mat); 1165 1166 /*E 1167 MatSORType - What type of (S)SOR to perform 1168 1169 Level: beginner 1170 1171 May be bitwise ORd together 1172 1173 Any additions/changes here MUST also be made in include/finclude/petscmat.h 1174 1175 MatSORType may be bitwise ORd together, so do not change the numbers 1176 1177 .seealso: MatSOR() 1178 E*/ 1179 typedef enum {SOR_FORWARD_SWEEP=1,SOR_BACKWARD_SWEEP=2,SOR_SYMMETRIC_SWEEP=3, 1180 SOR_LOCAL_FORWARD_SWEEP=4,SOR_LOCAL_BACKWARD_SWEEP=8, 1181 SOR_LOCAL_SYMMETRIC_SWEEP=12,SOR_ZERO_INITIAL_GUESS=16, 1182 SOR_EISENSTAT=32,SOR_APPLY_UPPER=64,SOR_APPLY_LOWER=128} MatSORType; 1183 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatSOR(Mat,Vec,PetscReal,MatSORType,PetscReal,PetscInt,PetscInt,Vec); 1184 1185 /* 1186 These routines are for efficiently computing Jacobians via finite differences. 1187 */ 1188 1189 /*E 1190 MatColoringType - String with the name of a PETSc matrix coloring or the creation function 1191 with an optional dynamic library name, for example 1192 http://www.mcs.anl.gov/petsc/lib.a:coloringcreate() 1193 1194 Level: beginner 1195 1196 .seealso: MatGetColoring() 1197 E*/ 1198 #define MatColoringType char* 1199 #define MATCOLORING_NATURAL "natural" 1200 #define MATCOLORING_SL "sl" 1201 #define MATCOLORING_LF "lf" 1202 #define MATCOLORING_ID "id" 1203 1204 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatGetColoring(Mat,const MatColoringType,ISColoring*); 1205 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatColoringRegister(const char[],const char[],const char[],PetscErrorCode(*)(Mat,MatColoringType,ISColoring *)); 1206 1207 /*MC 1208 MatColoringRegisterDynamic - Adds a new sparse matrix coloring to the 1209 matrix package. 1210 1211 Synopsis: 1212 PetscErrorCode MatColoringRegisterDynamic(const char *name_coloring,const char *path,const char *name_create,PetscErrorCode (*routine_create)(MatColoring)) 1213 1214 Not Collective 1215 1216 Input Parameters: 1217 + sname - name of Coloring (for example MATCOLORING_SL) 1218 . path - location of library where creation routine is 1219 . name - name of function that creates the Coloring type, a string 1220 - function - function pointer that creates the coloring 1221 1222 Level: developer 1223 1224 If dynamic libraries are used, then the fourth input argument (function) 1225 is ignored. 1226 1227 Sample usage: 1228 .vb 1229 MatColoringRegisterDynamic("my_color",/home/username/my_lib/lib/libO/solaris/mylib.a, 1230 "MyColor",MyColor); 1231 .ve 1232 1233 Then, your partitioner can be chosen with the procedural interface via 1234 $ MatColoringSetType(part,"my_color") 1235 or at runtime via the option 1236 $ -mat_coloring_type my_color 1237 1238 $PETSC_ARCH occuring in pathname will be replaced with appropriate values. 1239 1240 .keywords: matrix, Coloring, register 1241 1242 .seealso: MatColoringRegisterDestroy(), MatColoringRegisterAll() 1243 M*/ 1244 #if defined(PETSC_USE_DYNAMIC_LIBRARIES) 1245 #define MatColoringRegisterDynamic(a,b,c,d) MatColoringRegister(a,b,c,0) 1246 #else 1247 #define MatColoringRegisterDynamic(a,b,c,d) MatColoringRegister(a,b,c,d) 1248 #endif 1249 1250 extern PetscTruth MatColoringRegisterAllCalled; 1251 1252 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatColoringRegisterAll(const char[]); 1253 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatColoringRegisterDestroy(void); 1254 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatColoringPatch(Mat,PetscInt,PetscInt,ISColoringValue[],ISColoring*); 1255 1256 /*S 1257 MatFDColoring - Object for computing a sparse Jacobian via finite differences 1258 and coloring 1259 1260 Level: beginner 1261 1262 Concepts: coloring, sparse Jacobian, finite differences 1263 1264 .seealso: MatFDColoringCreate() 1265 S*/ 1266 typedef struct _p_MatFDColoring* MatFDColoring; 1267 1268 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatFDColoringCreate(Mat,ISColoring,MatFDColoring *); 1269 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatFDColoringDestroy(MatFDColoring); 1270 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatFDColoringView(MatFDColoring,PetscViewer); 1271 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatFDColoringSetFunction(MatFDColoring,PetscErrorCode (*)(void),void*); 1272 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatFDColoringGetFunction(MatFDColoring,PetscErrorCode (**)(void),void**); 1273 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatFDColoringSetParameters(MatFDColoring,PetscReal,PetscReal); 1274 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatFDColoringSetFromOptions(MatFDColoring); 1275 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatFDColoringApply(Mat,MatFDColoring,Vec,MatStructure*,void *); 1276 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatFDColoringApplyTS(Mat,MatFDColoring,PetscReal,Vec,MatStructure*,void *); 1277 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatFDColoringSetF(MatFDColoring,Vec); 1278 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatFDColoringGetPerturbedColumns(MatFDColoring,PetscInt*,PetscInt*[]); 1279 /* 1280 These routines are for partitioning matrices: currently used only 1281 for adjacency matrix, MatCreateMPIAdj(). 1282 */ 1283 1284 /*S 1285 MatPartitioning - Object for managing the partitioning of a matrix or graph 1286 1287 Level: beginner 1288 1289 Concepts: partitioning 1290 1291 .seealso: MatPartitioningCreate(), MatPartitioningType 1292 S*/ 1293 typedef struct _p_MatPartitioning* MatPartitioning; 1294 1295 /*E 1296 MatPartitioningType - String with the name of a PETSc matrix partitioning or the creation function 1297 with an optional dynamic library name, for example 1298 http://www.mcs.anl.gov/petsc/lib.a:partitioningcreate() 1299 1300 Level: beginner 1301 1302 .seealso: MatPartitioningCreate(), MatPartitioning 1303 E*/ 1304 #define MatPartitioningType char* 1305 #define MAT_PARTITIONING_CURRENT "current" 1306 #define MAT_PARTITIONING_SQUARE "square" 1307 #define MAT_PARTITIONING_PARMETIS "parmetis" 1308 #define MAT_PARTITIONING_CHACO "chaco" 1309 #define MAT_PARTITIONING_JOSTLE "jostle" 1310 #define MAT_PARTITIONING_PARTY "party" 1311 #define MAT_PARTITIONING_SCOTCH "scotch" 1312 1313 1314 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatPartitioningCreate(MPI_Comm,MatPartitioning*); 1315 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatPartitioningSetType(MatPartitioning,const MatPartitioningType); 1316 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatPartitioningSetNParts(MatPartitioning,PetscInt); 1317 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatPartitioningSetAdjacency(MatPartitioning,Mat); 1318 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatPartitioningSetVertexWeights(MatPartitioning,const PetscInt[]); 1319 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatPartitioningSetPartitionWeights(MatPartitioning,const PetscReal []); 1320 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatPartitioningApply(MatPartitioning,IS*); 1321 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatPartitioningDestroy(MatPartitioning); 1322 1323 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatPartitioningRegister(const char[],const char[],const char[],PetscErrorCode (*)(MatPartitioning)); 1324 1325 /*MC 1326 MatPartitioningRegisterDynamic - Adds a new sparse matrix partitioning to the 1327 matrix package. 1328 1329 Synopsis: 1330 PetscErrorCode MatPartitioningRegisterDynamic(const char *name_partitioning,const char *path,const char *name_create,PetscErrorCode (*routine_create)(MatPartitioning)) 1331 1332 Not Collective 1333 1334 Input Parameters: 1335 + sname - name of partitioning (for example MAT_PARTITIONING_CURRENT) or parmetis 1336 . path - location of library where creation routine is 1337 . name - name of function that creates the partitioning type, a string 1338 - function - function pointer that creates the partitioning type 1339 1340 Level: developer 1341 1342 If dynamic libraries are used, then the fourth input argument (function) 1343 is ignored. 1344 1345 Sample usage: 1346 .vb 1347 MatPartitioningRegisterDynamic("my_part",/home/username/my_lib/lib/libO/solaris/mylib.a, 1348 "MyPartCreate",MyPartCreate); 1349 .ve 1350 1351 Then, your partitioner can be chosen with the procedural interface via 1352 $ MatPartitioningSetType(part,"my_part") 1353 or at runtime via the option 1354 $ -mat_partitioning_type my_part 1355 1356 $PETSC_ARCH occuring in pathname will be replaced with appropriate values. 1357 1358 .keywords: matrix, partitioning, register 1359 1360 .seealso: MatPartitioningRegisterDestroy(), MatPartitioningRegisterAll() 1361 M*/ 1362 #if defined(PETSC_USE_DYNAMIC_LIBRARIES) 1363 #define MatPartitioningRegisterDynamic(a,b,c,d) MatPartitioningRegister(a,b,c,0) 1364 #else 1365 #define MatPartitioningRegisterDynamic(a,b,c,d) MatPartitioningRegister(a,b,c,d) 1366 #endif 1367 1368 extern PetscTruth MatPartitioningRegisterAllCalled; 1369 1370 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatPartitioningRegisterAll(const char[]); 1371 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatPartitioningRegisterDestroy(void); 1372 1373 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatPartitioningView(MatPartitioning,PetscViewer); 1374 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatPartitioningSetFromOptions(MatPartitioning); 1375 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatPartitioningGetType(MatPartitioning,const MatPartitioningType*); 1376 1377 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatPartitioningParmetisSetCoarseSequential(MatPartitioning); 1378 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatPartitioningParmetisGetEdgeCut(MatPartitioning, PetscInt *); 1379 1380 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatPartitioningJostleSetCoarseLevel(MatPartitioning,PetscReal); 1381 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatPartitioningJostleSetCoarseSequential(MatPartitioning); 1382 1383 typedef enum {MP_CHACO_MULTILEVEL_KL,MP_CHACO_SPECTRAL,MP_CHACO_LINEAR,MP_CHACO_RANDOM, MP_CHACO_SCATTERED} MPChacoGlobalType; 1384 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatPartitioningChacoSetGlobal(MatPartitioning, MPChacoGlobalType); 1385 typedef enum { MP_CHACO_KERNIGHAN_LIN, MP_CHACO_NONE } MPChacoLocalType; 1386 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatPartitioningChacoSetLocal(MatPartitioning, MPChacoLocalType); 1387 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatPartitioningChacoSetCoarseLevel(MatPartitioning,PetscReal); 1388 typedef enum { MP_CHACO_LANCZOS, MP_CHACO_RQI_SYMMLQ } MPChacoEigenType; 1389 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatPartitioningChacoSetEigenSolver(MatPartitioning,MPChacoEigenType); 1390 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatPartitioningChacoSetEigenTol(MatPartitioning, PetscReal); 1391 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatPartitioningChacoSetEigenNumber(MatPartitioning, PetscInt); 1392 1393 #define MP_PARTY_OPT "opt" 1394 #define MP_PARTY_LIN "lin" 1395 #define MP_PARTY_SCA "sca" 1396 #define MP_PARTY_RAN "ran" 1397 #define MP_PARTY_GBF "gbf" 1398 #define MP_PARTY_GCF "gcf" 1399 #define MP_PARTY_BUB "bub" 1400 #define MP_PARTY_DEF "def" 1401 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatPartitioningPartySetGlobal(MatPartitioning, const char*); 1402 #define MP_PARTY_HELPFUL_SETS "hs" 1403 #define MP_PARTY_KERNIGHAN_LIN "kl" 1404 #define MP_PARTY_NONE "no" 1405 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatPartitioningPartySetLocal(MatPartitioning, const char*); 1406 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatPartitioningPartySetCoarseLevel(MatPartitioning,PetscReal); 1407 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatPartitioningPartySetBipart(MatPartitioning,PetscTruth); 1408 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatPartitioningPartySetMatchOptimization(MatPartitioning,PetscTruth); 1409 1410 typedef enum { MP_SCOTCH_GREEDY, MP_SCOTCH_GPS, MP_SCOTCH_GR_GPS } MPScotchGlobalType; 1411 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatPartitioningScotchSetArch(MatPartitioning,const char*); 1412 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatPartitioningScotchSetMultilevel(MatPartitioning); 1413 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatPartitioningScotchSetGlobal(MatPartitioning,MPScotchGlobalType); 1414 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatPartitioningScotchSetCoarseLevel(MatPartitioning,PetscReal); 1415 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatPartitioningScotchSetHostList(MatPartitioning,const char*); 1416 typedef enum { MP_SCOTCH_KERNIGHAN_LIN, MP_SCOTCH_NONE } MPScotchLocalType; 1417 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatPartitioningScotchSetLocal(MatPartitioning,MPScotchLocalType); 1418 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatPartitioningScotchSetMapping(MatPartitioning); 1419 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatPartitioningScotchSetStrategy(MatPartitioning,char*); 1420 1421 EXTERN PetscErrorCode MatMeshToVertexGraph(Mat,PetscInt,Mat*); 1422 EXTERN PetscErrorCode MatMeshToCellGraph(Mat,PetscInt,Mat*); 1423 1424 /* 1425 If you add entries here you must also add them to finclude/petscmat.h 1426 */ 1427 typedef enum { MATOP_SET_VALUES=0, 1428 MATOP_GET_ROW=1, 1429 MATOP_RESTORE_ROW=2, 1430 MATOP_MULT=3, 1431 MATOP_MULT_ADD=4, 1432 MATOP_MULT_TRANSPOSE=5, 1433 MATOP_MULT_TRANSPOSE_ADD=6, 1434 MATOP_SOLVE=7, 1435 MATOP_SOLVE_ADD=8, 1436 MATOP_SOLVE_TRANSPOSE=9, 1437 MATOP_SOLVE_TRANSPOSE_ADD=10, 1438 MATOP_LUFACTOR=11, 1439 MATOP_CHOLESKYFACTOR=12, 1440 MATOP_SOR=13, 1441 MATOP_TRANSPOSE=14, 1442 MATOP_GETINFO=15, 1443 MATOP_EQUAL=16, 1444 MATOP_GET_DIAGONAL=17, 1445 MATOP_DIAGONAL_SCALE=18, 1446 MATOP_NORM=19, 1447 MATOP_ASSEMBLY_BEGIN=20, 1448 MATOP_ASSEMBLY_END=21, 1449 MATOP_SET_OPTION=22, 1450 MATOP_ZERO_ENTRIES=23, 1451 MATOP_ZERO_ROWS=24, 1452 MATOP_LUFACTOR_SYMBOLIC=25, 1453 MATOP_LUFACTOR_NUMERIC=26, 1454 MATOP_CHOLESKY_FACTOR_SYMBOLIC=27, 1455 MATOP_CHOLESKY_FACTOR_NUMERIC=28, 1456 MATOP_SETUP_PREALLOCATION=29, 1457 MATOP_ILUFACTOR_SYMBOLIC=30, 1458 MATOP_ICCFACTOR_SYMBOLIC=31, 1459 MATOP_GET_ARRAY=32, 1460 MATOP_RESTORE_ARRAY=33, 1461 MATOP_DUPLICATE=34, 1462 MATOP_FORWARD_SOLVE=35, 1463 MATOP_BACKWARD_SOLVE=36, 1464 MATOP_ILUFACTOR=37, 1465 MATOP_ICCFACTOR=38, 1466 MATOP_AXPY=39, 1467 MATOP_GET_SUBMATRICES=40, 1468 MATOP_INCREASE_OVERLAP=41, 1469 MATOP_GET_VALUES=42, 1470 MATOP_COPY=43, 1471 MATOP_GET_ROW_MAX=44, 1472 MATOP_SCALE=45, 1473 MATOP_SHIFT=46, 1474 MATOP_DIAGONAL_SET=47, 1475 MATOP_ILUDT_FACTOR=48, 1476 MATOP_SET_BLOCK_SIZE=49, 1477 MATOP_GET_ROW_IJ=50, 1478 MATOP_RESTORE_ROW_IJ=51, 1479 MATOP_GET_COLUMN_IJ=52, 1480 MATOP_RESTORE_COLUMN_IJ=53, 1481 MATOP_FDCOLORING_CREATE=54, 1482 MATOP_COLORING_PATCH=55, 1483 MATOP_SET_UNFACTORED=56, 1484 MATOP_PERMUTE=57, 1485 MATOP_SET_VALUES_BLOCKED=58, 1486 MATOP_GET_SUBMATRIX=59, 1487 MATOP_DESTROY=60, 1488 MATOP_VIEW=61, 1489 MATOP_CONVERT_FROM=62, 1490 MATOP_USE_SCALED_FORM=63, 1491 MATOP_SCALE_SYSTEM=64, 1492 MATOP_UNSCALE_SYSTEM=65, 1493 MATOP_SET_LOCAL_TO_GLOBAL_MAP=66, 1494 MATOP_SET_VALUES_LOCAL=67, 1495 MATOP_ZERO_ROWS_LOCAL=68, 1496 MATOP_GET_ROW_MAX_ABS=69, 1497 MATOP_GET_ROW_MIN_ABS=70, 1498 MATOP_CONVERT=71, 1499 MATOP_SET_COLORING=72, 1500 MATOP_SET_VALUES_ADIC=73, 1501 MATOP_SET_VALUES_ADIFOR=74, 1502 MATOP_FD_COLORING_APPLY=75, 1503 MATOP_SET_FROM_OPTIONS=76, 1504 MATOP_MULT_CON=77, 1505 MATOP_MULT_TRANSPOSE_CON=78, 1506 MATOP_PERMUTE_SPARSIFY=79, 1507 MATOP_MULT_MULTIPLE=80, 1508 MATOP_SOLVE_MULTIPLE=81, 1509 MATOP_GET_INERTIA=82, 1510 MATOP_LOAD=83, 1511 MATOP_IS_SYMMETRIC=84, 1512 MATOP_IS_HERMITIAN=85, 1513 MATOP_IS_STRUCTURALLY_SYMMETRIC=86, 1514 MATOP_DUMMY=87, 1515 MATOP_GET_VECS=88, 1516 MATOP_MAT_MULT=89, 1517 MATOP_MAT_MULT_SYMBOLIC=90, 1518 MATOP_MAT_MULT_NUMERIC=91, 1519 MATOP_PTAP=92, 1520 MATOP_PTAP_SYMBOLIC=93, 1521 MATOP_PTAP_NUMERIC=94, 1522 MATOP_MAT_MULTTRANSPOSE=95, 1523 MATOP_MAT_MULTTRANSPOSE_SYM=96, 1524 MATOP_MAT_MULTTRANSPOSE_NUM=97, 1525 MATOP_PTAP_SYMBOLIC_SEQAIJ=98, 1526 MATOP_PTAP_NUMERIC_SEQAIJ=99, 1527 MATOP_PTAP_SYMBOLIC_MPIAIJ=100, 1528 MATOP_PTAP_NUMERIC_MPIAIJ=101, 1529 MATOP_CONJUGATE=102, 1530 MATOP_SET_SIZES=103, 1531 MATOP_SET_VALUES_ROW=104, 1532 MATOP_REAL_PART=105, 1533 MATOP_IMAG_PART=106, 1534 MATOP_GET_ROW_UTRIANGULAR=107, 1535 MATOP_RESTORE_ROW_UTRIANGULAR=108, 1536 MATOP_MATSOLVE=109, 1537 MATOP_GET_REDUNDANTMATRIX=110, 1538 MATOP_GET_ROW_MIN=111, 1539 MATOP_GET_COLUMN_VEC=112, 1540 MATOP_MISSING_DIAGONAL=113, 1541 MATOP_MATGETSEQNONZEROSTRUCTURE=114, 1542 MATOP_CREATE=115, 1543 MATOP_GET_GHOSTS=116, 1544 MATOP_MULT_DIAGONAL_BLOCK=119, 1545 MATOP_HERMITIANTRANSPOSE=120, 1546 MATOP_MULTHERMITIANTRANSPOSE=121, 1547 MATOP_MULTHERMITIANTRANSPOSEADD=122 1548 } MatOperation; 1549 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatHasOperation(Mat,MatOperation,PetscTruth*); 1550 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatShellSetOperation(Mat,MatOperation,void(*)(void)); 1551 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatShellGetOperation(Mat,MatOperation,void(**)(void)); 1552 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatShellSetContext(Mat,void*); 1553 1554 /* 1555 Codes for matrices stored on disk. By default they are 1556 stored in a universal format. By changing the format with 1557 PetscViewerSetFormat(viewer,PETSC_VIEWER_NATIVE); the matrices will 1558 be stored in a way natural for the matrix, for example dense matrices 1559 would be stored as dense. Matrices stored this way may only be 1560 read into matrices of the same time. 1561 */ 1562 #define MATRIX_BINARY_FORMAT_DENSE -1 1563 1564 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatMPIBAIJSetHashTableFactor(Mat,PetscReal); 1565 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatISGetLocalMat(Mat,Mat*); 1566 1567 /*S 1568 MatNullSpace - Object that removes a null space from a vector, i.e. 1569 orthogonalizes the vector to a subsapce 1570 1571 Level: advanced 1572 1573 Concepts: matrix; linear operator, null space 1574 1575 Users manual sections: 1576 . sec_singular 1577 1578 .seealso: MatNullSpaceCreate() 1579 S*/ 1580 typedef struct _p_MatNullSpace* MatNullSpace; 1581 1582 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatNullSpaceCreate(MPI_Comm,PetscTruth,PetscInt,const Vec[],MatNullSpace*); 1583 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatNullSpaceSetFunction(MatNullSpace,PetscErrorCode (*)(MatNullSpace,Vec,void*),void*); 1584 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatNullSpaceDestroy(MatNullSpace); 1585 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatNullSpaceRemove(MatNullSpace,Vec,Vec*); 1586 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatNullSpaceAttach(Mat,MatNullSpace); 1587 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatNullSpaceTest(MatNullSpace,Mat,PetscTruth *); 1588 1589 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatReorderingSeqSBAIJ(Mat,IS); 1590 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatMPISBAIJSetHashTableFactor(Mat,PetscReal); 1591 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatSeqSBAIJSetColumnIndices(Mat,PetscInt *); 1592 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatSeqBAIJInvertBlockDiagonal(Mat); 1593 1594 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatCreateMAIJ(Mat,PetscInt,Mat*); 1595 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatMAIJRedimension(Mat,PetscInt,Mat*); 1596 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatMAIJGetAIJ(Mat,Mat*); 1597 1598 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatComputeExplicitOperator(Mat,Mat*); 1599 1600 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatDiagonalScaleLocal(Mat,Vec); 1601 1602 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatCreateMFFD(MPI_Comm,PetscInt,PetscInt,PetscInt,PetscInt,Mat*); 1603 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatMFFDSetBase(Mat,Vec,Vec); 1604 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatMFFDSetFunction(Mat,PetscErrorCode(*)(void*,Vec,Vec),void*); 1605 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatMFFDSetFunctioni(Mat,PetscErrorCode (*)(void*,PetscInt,Vec,PetscScalar*)); 1606 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatMFFDSetFunctioniBase(Mat,PetscErrorCode (*)(void*,Vec)); 1607 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatMFFDAddNullSpace(Mat,MatNullSpace); 1608 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatMFFDSetHHistory(Mat,PetscScalar[],PetscInt); 1609 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatMFFDResetHHistory(Mat); 1610 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatMFFDSetFunctionError(Mat,PetscReal); 1611 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatMFFDSetPeriod(Mat,PetscInt); 1612 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatMFFDGetH(Mat,PetscScalar *); 1613 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatMFFDSetOptionsPrefix(Mat,const char[]); 1614 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatMFFDSetFromOptions(Mat); 1615 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatMFFDCheckPositivity(void*,Vec,Vec,PetscScalar*); 1616 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatMFFDSetCheckh(Mat,PetscErrorCode (*)(void*,Vec,Vec,PetscScalar*),void*); 1617 1618 1619 typedef struct _p_MatMFFD* MatMFFD; 1620 1621 /*E 1622 MatMFFDType - algorithm used to compute the h used in computing matrix-vector products via differencing of the function 1623 1624 Level: beginner 1625 1626 .seealso: MatMFFDSetType(), MatMFFDRegister() 1627 E*/ 1628 #define MatMFFDType char* 1629 #define MATMFFD_DS "ds" 1630 #define MATMFFD_WP "wp" 1631 1632 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatMFFDSetType(Mat,const MatMFFDType); 1633 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatMFFDRegister(const char[],const char[],const char[],PetscErrorCode (*)(MatMFFD)); 1634 1635 /*MC 1636 MatMFFDRegisterDynamic - Adds a method to the MatMFFD registry. 1637 1638 Synopsis: 1639 PetscErrorCode MatMFFDRegisterDynamic(const char *name_solver,const char *path,const char *name_create,PetscErrorCode (*routine_create)(MatMFFD)) 1640 1641 Not Collective 1642 1643 Input Parameters: 1644 + name_solver - name of a new user-defined compute-h module 1645 . path - path (either absolute or relative) the library containing this solver 1646 . name_create - name of routine to create method context 1647 - routine_create - routine to create method context 1648 1649 Level: developer 1650 1651 Notes: 1652 MatMFFDRegisterDynamic() may be called multiple times to add several user-defined solvers. 1653 1654 If dynamic libraries are used, then the fourth input argument (routine_create) 1655 is ignored. 1656 1657 Sample usage: 1658 .vb 1659 MatMFFDRegisterDynamic("my_h",/home/username/my_lib/lib/libO/solaris/mylib.a, 1660 "MyHCreate",MyHCreate); 1661 .ve 1662 1663 Then, your solver can be chosen with the procedural interface via 1664 $ MatMFFDSetType(mfctx,"my_h") 1665 or at runtime via the option 1666 $ -snes_mf_type my_h 1667 1668 .keywords: MatMFFD, register 1669 1670 .seealso: MatMFFDRegisterAll(), MatMFFDRegisterDestroy() 1671 M*/ 1672 #if defined(PETSC_USE_DYNAMIC_LIBRARIES) 1673 #define MatMFFDRegisterDynamic(a,b,c,d) MatMFFDRegister(a,b,c,0) 1674 #else 1675 #define MatMFFDRegisterDynamic(a,b,c,d) MatMFFDRegister(a,b,c,d) 1676 #endif 1677 1678 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatMFFDRegisterAll(const char[]); 1679 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatMFFDRegisterDestroy(void); 1680 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatMFFDDSSetUmin(Mat,PetscReal); 1681 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatMFFDWPSetComputeNormU(Mat,PetscTruth); 1682 1683 1684 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT PetscViewerMathematicaPutMatrix(PetscViewer, PetscInt, PetscInt, PetscReal *); 1685 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT PetscViewerMathematicaPutCSRMatrix(PetscViewer, PetscInt, PetscInt, PetscInt *, PetscInt *, PetscReal *); 1686 1687 /* 1688 PETSc interface to MUMPS 1689 */ 1690 #ifdef PETSC_HAVE_MUMPS 1691 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatMumpsSetIcntl(Mat,PetscInt,PetscInt); 1692 #endif 1693 1694 PETSC_EXTERN_CXX_END 1695 #endif 1696