1 /* 2 Include file for the matrix component of PETSc 3 */ 4 #pragma once 5 6 #include <petscvec.h> 7 8 /* SUBMANSEC = Mat */ 9 10 /*S 11 Mat - Abstract PETSc matrix object used to manage all linear operators in PETSc, even those without 12 an explicit sparse representation (such as matrix-free operators) 13 14 Level: beginner 15 16 Note: 17 See [](doc_matrix), [](ch_matrices) and `MatType` for available matrix types 18 19 .seealso: [](doc_matrix), [](ch_matrices), `MatCreate()`, `MatType`, `MatSetType()`, `MatDestroy()` 20 S*/ 21 typedef struct _p_Mat *Mat; 22 23 /*J 24 MatType - String with the name of a PETSc matrix type 25 26 Level: beginner 27 28 Note: 29 [](doc_matrix) for a table of available matrix types 30 31 .seealso: [](doc_matrix), [](ch_matrices), `MatSetType()`, `Mat`, `MatSolverType`, `MatRegister()` 32 J*/ 33 typedef const char *MatType; 34 #define MATSAME "same" 35 #define MATMAIJ "maij" 36 #define MATSEQMAIJ "seqmaij" 37 #define MATMPIMAIJ "mpimaij" 38 #define MATKAIJ "kaij" 39 #define MATSEQKAIJ "seqkaij" 40 #define MATMPIKAIJ "mpikaij" 41 #define MATIS "is" 42 #define MATAIJ "aij" 43 #define MATSEQAIJ "seqaij" 44 #define MATMPIAIJ "mpiaij" 45 #define MATAIJCRL "aijcrl" 46 #define MATSEQAIJCRL "seqaijcrl" 47 #define MATMPIAIJCRL "mpiaijcrl" 48 #define MATAIJCUSPARSE "aijcusparse" 49 #define MATSEQAIJCUSPARSE "seqaijcusparse" 50 #define MATMPIAIJCUSPARSE "mpiaijcusparse" 51 #define MATAIJHIPSPARSE "aijhipsparse" 52 #define MATSEQAIJHIPSPARSE "seqaijhipsparse" 53 #define MATMPIAIJHIPSPARSE "mpiaijhipsparse" 54 #define MATAIJKOKKOS "aijkokkos" 55 #define MATSEQAIJKOKKOS "seqaijkokkos" 56 #define MATMPIAIJKOKKOS "mpiaijkokkos" 57 #define MATAIJVIENNACL "aijviennacl" 58 #define MATSEQAIJVIENNACL "seqaijviennacl" 59 #define MATMPIAIJVIENNACL "mpiaijviennacl" 60 #define MATAIJPERM "aijperm" 61 #define MATSEQAIJPERM "seqaijperm" 62 #define MATMPIAIJPERM "mpiaijperm" 63 #define MATAIJSELL "aijsell" 64 #define MATSEQAIJSELL "seqaijsell" 65 #define MATMPIAIJSELL "mpiaijsell" 66 #define MATAIJMKL "aijmkl" 67 #define MATSEQAIJMKL "seqaijmkl" 68 #define MATMPIAIJMKL "mpiaijmkl" 69 #define MATBAIJMKL "baijmkl" 70 #define MATSEQBAIJMKL "seqbaijmkl" 71 #define MATMPIBAIJMKL "mpibaijmkl" 72 #define MATSHELL "shell" 73 #define MATCENTERING "centering" 74 #define MATDENSE "dense" 75 #define MATDENSECUDA "densecuda" 76 #define MATDENSEHIP "densehip" 77 #define MATSEQDENSE "seqdense" 78 #define MATSEQDENSECUDA "seqdensecuda" 79 #define MATSEQDENSEHIP "seqdensehip" 80 #define MATMPIDENSE "mpidense" 81 #define MATMPIDENSECUDA "mpidensecuda" 82 #define MATMPIDENSEHIP "mpidensehip" 83 #define MATELEMENTAL "elemental" 84 #define MATSCALAPACK "scalapack" 85 #define MATBAIJ "baij" 86 #define MATSEQBAIJ "seqbaij" 87 #define MATMPIBAIJ "mpibaij" 88 #define MATMPIADJ "mpiadj" 89 #define MATSBAIJ "sbaij" 90 #define MATSEQSBAIJ "seqsbaij" 91 #define MATMPISBAIJ "mpisbaij" 92 #define MATMFFD "mffd" 93 #define MATNORMAL "normal" 94 #define MATNORMALHERMITIAN "normalh" 95 #define MATLRC "lrc" 96 #define MATSCATTER "scatter" 97 #define MATBLOCKMAT "blockmat" 98 #define MATCOMPOSITE "composite" 99 #define MATFFT "fft" 100 #define MATFFTW "fftw" 101 #define MATSEQCUFFT "seqcufft" 102 #define MATSEQHIPFFT "seqhipfft" 103 #define MATTRANSPOSEMAT PETSC_DEPRECATED_MACRO(3, 18, 0, "MATTRANSPOSEVIRTUAL", ) "transpose" 104 #define MATTRANSPOSEVIRTUAL "transpose" 105 #define MATHERMITIANTRANSPOSEVIRTUAL "hermitiantranspose" 106 #define MATSCHURCOMPLEMENT "schurcomplement" 107 #define MATPYTHON "python" 108 #define MATHYPRE "hypre" 109 #define MATHYPRESTRUCT "hyprestruct" 110 #define MATHYPRESSTRUCT "hypresstruct" 111 #define MATSUBMATRIX "submatrix" 112 #define MATLOCALREF "localref" 113 #define MATNEST "nest" 114 #define MATPREALLOCATOR "preallocator" 115 #define MATSELL "sell" 116 #define MATSEQSELL "seqsell" 117 #define MATMPISELL "mpisell" 118 #define MATSELLCUDA "sellcuda" 119 #define MATSEQSELLCUDA "seqsellcuda" 120 #define MATMPISELLCUDA "mpisellcuda" 121 #define MATDUMMY "dummy" 122 #define MATLMVM "lmvm" 123 #define MATLMVMDFP "lmvmdfp" 124 #define MATLMVMBFGS "lmvmbfgs" 125 #define MATLMVMSR1 "lmvmsr1" 126 #define MATLMVMBROYDEN "lmvmbroyden" 127 #define MATLMVMBADBROYDEN "lmvmbadbroyden" 128 #define MATLMVMSYMBROYDEN "lmvmsymbroyden" 129 #define MATLMVMSYMBADBROYDEN "lmvmsymbadbroyden" 130 #define MATLMVMDIAGBROYDEN "lmvmdiagbroyden" 131 #define MATCONSTANTDIAGONAL "constantdiagonal" 132 #define MATDIAGONAL "diagonal" 133 #define MATHTOOL "htool" 134 #define MATH2OPUS "h2opus" 135 136 /*J 137 MatSolverType - String with the name of a PETSc factorization based matrix solver type. 138 139 For example: "petsc" indicates what PETSc provides, "superlu_dist" the parallel SuperLU_DIST package etc 140 141 Level: beginner 142 143 Note: 144 `MATSOLVERUMFPACK`, `MATSOLVERCHOLMOD`, `MATSOLVERKLU`, `MATSOLVERSPQR` form the SuiteSparse package; you can use `--download-suitesparse` as 145 a ./configure option to install them 146 147 .seealso: [](sec_matfactor), [](ch_matrices), `MatGetFactor()`, `PCFactorSetMatSolverType()`, `PCFactorGetMatSolverType()` 148 J*/ 149 typedef const char *MatSolverType; 150 #define MATSOLVERSUPERLU "superlu" 151 #define MATSOLVERSUPERLU_DIST "superlu_dist" 152 #define MATSOLVERSTRUMPACK "strumpack" 153 #define MATSOLVERUMFPACK "umfpack" 154 #define MATSOLVERCHOLMOD "cholmod" 155 #define MATSOLVERKLU "klu" 156 #define MATSOLVERELEMENTAL "elemental" 157 #define MATSOLVERSCALAPACK "scalapack" 158 #define MATSOLVERESSL "essl" 159 #define MATSOLVERLUSOL "lusol" 160 #define MATSOLVERMUMPS "mumps" 161 #define MATSOLVERMKL_PARDISO "mkl_pardiso" 162 #define MATSOLVERMKL_CPARDISO "mkl_cpardiso" 163 #define MATSOLVERPASTIX "pastix" 164 #define MATSOLVERMATLAB "matlab" 165 #define MATSOLVERPETSC "petsc" 166 #define MATSOLVERBAS "bas" 167 #define MATSOLVERCUSPARSE "cusparse" 168 #define MATSOLVERCUDA "cuda" 169 #define MATSOLVERHIPSPARSE "hipsparse" 170 #define MATSOLVERHIP "hip" 171 #define MATSOLVERKOKKOS "kokkos" 172 #define MATSOLVERSPQR "spqr" 173 174 /*E 175 MatFactorType - indicates what type of factorization is requested 176 177 Values: 178 + `MAT_FACTOR_LU` - LU factorization 179 . `MAT_FACTOR_CHOLESKY` - Cholesky factorization 180 . `MAT_FACTOR_ILU` - ILU factorization 181 . `MAT_FACTOR_ICC` - incomplete Cholesky factorization 182 . `MAT_FACTOR_ILUDT` - ILU factorization with drop tolerance 183 - `MAT_FACTOR_QR` - QR factorization 184 185 Level: beginner 186 187 .seealso: [](ch_matrices), `MatSolverType`, `MatGetFactor()`, `MatGetFactorAvailable()`, `MatSolverTypeRegister()` 188 E*/ 189 typedef enum { 190 MAT_FACTOR_NONE, 191 MAT_FACTOR_LU, 192 MAT_FACTOR_CHOLESKY, 193 MAT_FACTOR_ILU, 194 MAT_FACTOR_ICC, 195 MAT_FACTOR_ILUDT, 196 MAT_FACTOR_QR, 197 MAT_FACTOR_NUM_TYPES 198 } MatFactorType; 199 PETSC_EXTERN const char *const MatFactorTypes[]; 200 201 PETSC_EXTERN PetscErrorCode MatGetFactor(Mat, MatSolverType, MatFactorType, Mat *); 202 PETSC_EXTERN PetscErrorCode MatGetFactorAvailable(Mat, MatSolverType, MatFactorType, PetscBool *); 203 PETSC_EXTERN PetscErrorCode MatFactorGetCanUseOrdering(Mat, PetscBool *); 204 PETSC_DEPRECATED_FUNCTION(3, 15, 0, "MatFactorGetCanUseOrdering()", ) static inline PetscErrorCode MatFactorGetUseOrdering(Mat A, PetscBool *b) 205 { 206 return MatFactorGetCanUseOrdering(A, b); 207 } 208 PETSC_EXTERN PetscErrorCode MatFactorGetSolverType(Mat, MatSolverType *); 209 PETSC_EXTERN PetscErrorCode MatGetFactorType(Mat, MatFactorType *); 210 PETSC_EXTERN PetscErrorCode MatSetFactorType(Mat, MatFactorType); 211 PETSC_EXTERN_TYPEDEF typedef PetscErrorCode (*MatSolverFunction)(Mat, MatFactorType, Mat *); 212 PETSC_EXTERN PetscErrorCode MatSolverTypeRegister(MatSolverType, MatType, MatFactorType, MatSolverFunction); 213 PETSC_EXTERN PetscErrorCode MatSolverTypeGet(MatSolverType, MatType, MatFactorType, PetscBool *, PetscBool *, MatSolverFunction *); 214 typedef MatSolverType MatSolverPackage PETSC_DEPRECATED_TYPEDEF(3, 9, 0, "MatSolverType", ); 215 PETSC_DEPRECATED_FUNCTION(3, 9, 0, "MatSolverTypeRegister()", ) static inline PetscErrorCode MatSolverPackageRegister(MatSolverType stype, MatType mtype, MatFactorType ftype, MatSolverFunction f) 216 { 217 return MatSolverTypeRegister(stype, mtype, ftype, f); 218 } 219 PETSC_DEPRECATED_FUNCTION(3, 9, 0, "MatSolverTypeGet()", ) static inline PetscErrorCode MatSolverPackageGet(MatSolverType stype, MatType mtype, MatFactorType ftype, PetscBool *foundmtype, PetscBool *foundstype, MatSolverFunction *f) 220 { 221 return MatSolverTypeGet(stype, mtype, ftype, foundmtype, foundstype, f); 222 } 223 224 /*E 225 MatProductType - indicates what type of matrix product is requested 226 227 Values: 228 + `MATPRODUCT_AB` - product of two matrices 229 . `MATPRODUCT_AtB` - product of the transpose of a given matrix with a matrix 230 . `MATPRODUCT_ABt` - product of a matrix with the transpose of another given matrix 231 . `MATPRODUCT_PtAP` - the triple product of the transpose of a matrix with another matrix and itself 232 . `MATPRODUCT_RARt` - the triple product of a matrix, another matrix and the transpose of the first matrix 233 - `MATPRODUCT_ABC` - the product of three matrices 234 235 Level: beginner 236 237 .seealso: [](sec_matmatproduct), [](ch_matrices), `MatProductSetType()` 238 E*/ 239 typedef enum { 240 MATPRODUCT_UNSPECIFIED = 0, 241 MATPRODUCT_AB, 242 MATPRODUCT_AtB, 243 MATPRODUCT_ABt, 244 MATPRODUCT_PtAP, 245 MATPRODUCT_RARt, 246 MATPRODUCT_ABC 247 } MatProductType; 248 PETSC_EXTERN const char *const MatProductTypes[]; 249 250 /*J 251 MatProductAlgorithm - String with the name of an algorithm for a PETSc matrix product implementation 252 253 Level: beginner 254 255 .seealso: [](sec_matmatproduct), [](ch_matrices), `MatSetType()`, `Mat`, `MatProductSetAlgorithm()`, `MatProductType` 256 J*/ 257 typedef const char *MatProductAlgorithm; 258 #define MATPRODUCTALGORITHMDEFAULT "default" 259 #define MATPRODUCTALGORITHMSORTED "sorted" 260 #define MATPRODUCTALGORITHMSCALABLE "scalable" 261 #define MATPRODUCTALGORITHMSCALABLEFAST "scalable_fast" 262 #define MATPRODUCTALGORITHMHEAP "heap" 263 #define MATPRODUCTALGORITHMBHEAP "btheap" 264 #define MATPRODUCTALGORITHMLLCONDENSED "llcondensed" 265 #define MATPRODUCTALGORITHMROWMERGE "rowmerge" 266 #define MATPRODUCTALGORITHMOUTERPRODUCT "outerproduct" 267 #define MATPRODUCTALGORITHMATB "at*b" 268 #define MATPRODUCTALGORITHMRAP "rap" 269 #define MATPRODUCTALGORITHMNONSCALABLE "nonscalable" 270 #define MATPRODUCTALGORITHMSEQMPI "seqmpi" 271 #define MATPRODUCTALGORITHMBACKEND "backend" 272 #define MATPRODUCTALGORITHMOVERLAPPING "overlapping" 273 #define MATPRODUCTALGORITHMMERGED "merged" 274 #define MATPRODUCTALGORITHMALLATONCE "allatonce" 275 #define MATPRODUCTALGORITHMALLATONCEMERGED "allatonce_merged" 276 #define MATPRODUCTALGORITHMALLGATHERV "allgatherv" 277 #define MATPRODUCTALGORITHMCYCLIC "cyclic" 278 #if defined(PETSC_HAVE_HYPRE) 279 #define MATPRODUCTALGORITHMHYPRE "hypre" 280 #endif 281 282 PETSC_EXTERN PetscErrorCode MatProductCreate(Mat, Mat, Mat, Mat *); 283 PETSC_EXTERN PetscErrorCode MatProductCreateWithMat(Mat, Mat, Mat, Mat); 284 PETSC_EXTERN PetscErrorCode MatProductSetType(Mat, MatProductType); 285 PETSC_EXTERN PetscErrorCode MatProductSetAlgorithm(Mat, MatProductAlgorithm); 286 PETSC_EXTERN PetscErrorCode MatProductSetFill(Mat, PetscReal); 287 PETSC_EXTERN PetscErrorCode MatProductSetFromOptions(Mat); 288 PETSC_EXTERN PetscErrorCode MatProductSymbolic(Mat); 289 PETSC_EXTERN PetscErrorCode MatProductNumeric(Mat); 290 PETSC_EXTERN PetscErrorCode MatProductReplaceMats(Mat, Mat, Mat, Mat); 291 PETSC_EXTERN PetscErrorCode MatProductClear(Mat); 292 PETSC_EXTERN PetscErrorCode MatProductView(Mat, PetscViewer); 293 PETSC_EXTERN PetscErrorCode MatProductGetType(Mat, MatProductType *); 294 PETSC_EXTERN PetscErrorCode MatProductGetMats(Mat, Mat *, Mat *, Mat *); 295 296 /* Logging support */ 297 #define MAT_FILE_CLASSID 1211216 /* used to indicate matrices in binary files */ 298 PETSC_EXTERN PetscClassId MAT_CLASSID; 299 PETSC_EXTERN PetscClassId MAT_COLORING_CLASSID; 300 PETSC_EXTERN PetscClassId MAT_FDCOLORING_CLASSID; 301 PETSC_EXTERN PetscClassId MAT_TRANSPOSECOLORING_CLASSID; 302 PETSC_EXTERN PetscClassId MAT_PARTITIONING_CLASSID; 303 PETSC_EXTERN PetscClassId MAT_COARSEN_CLASSID; 304 PETSC_EXTERN PetscClassId MAT_NULLSPACE_CLASSID; 305 PETSC_EXTERN PetscClassId MATMFFD_CLASSID; 306 307 /*E 308 MatReuse - Indicates if matrices obtained from a previous call to `MatCreateSubMatrices()`, `MatCreateSubMatrix()`, `MatConvert()` or several other functions 309 are to be reused to store the new matrix values. 310 311 Values: 312 + `MAT_INITIAL_MATRIX` - create a new matrix 313 . `MAT_REUSE_MATRIX` - reuse the matrix created with a previous call that used `MAT_INITIAL_MATRIX` 314 . `MAT_INPLACE_MATRIX` - replace the first input matrix with the new matrix (not applicable to all functions) 315 - `MAT_IGNORE_MATRIX` - do not create a new matrix or reuse a give matrix, just ignore that matrix argument (not applicable to all functions) 316 317 Level: beginner 318 319 .seealso: [](ch_matrices), `Mat`, `MatCreateSubMatrices()`, `MatCreateSubMatrix()`, `MatDestroyMatrices()`, `MatConvert()` 320 E*/ 321 typedef enum { 322 MAT_INITIAL_MATRIX, 323 MAT_REUSE_MATRIX, 324 MAT_IGNORE_MATRIX, 325 MAT_INPLACE_MATRIX 326 } MatReuse; 327 328 /*E 329 MatCreateSubMatrixOption - Indicates if matrices obtained from a call to `MatCreateSubMatrices()` 330 include the matrix values. Currently it is only used by `MatGetSeqNonzeroStructure()`. 331 332 Level: developer 333 334 Values: 335 + `MAT_DO_NOT_GET_VALUES` - do not copy the matrix values 336 - `MAT_GET_VALUES` - copy the matrix values 337 338 Developer Note: 339 Why is not just a boolean used for this information? 340 341 .seealso: [](ch_matrices), `Mat`, `MatDuplicateOption`, `PetscCopyMode`, `MatGetSeqNonzeroStructure()` 342 E*/ 343 typedef enum { 344 MAT_DO_NOT_GET_VALUES, 345 MAT_GET_VALUES 346 } MatCreateSubMatrixOption; 347 348 PETSC_EXTERN PetscErrorCode MatInitializePackage(void); 349 PETSC_EXTERN PetscErrorCode MatFinalizePackage(void); 350 351 PETSC_EXTERN PetscErrorCode MatCreate(MPI_Comm, Mat *); 352 PETSC_EXTERN PetscErrorCode MatCreateFromOptions(MPI_Comm, const char *, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, Mat *); 353 PETSC_EXTERN PetscErrorCode MatSetSizes(Mat, PetscInt, PetscInt, PetscInt, PetscInt); 354 PETSC_EXTERN PetscErrorCode MatSetType(Mat, MatType); 355 PETSC_EXTERN PetscErrorCode MatGetVecType(Mat, VecType *); 356 PETSC_EXTERN PetscErrorCode MatSetVecType(Mat, VecType); 357 PETSC_EXTERN PetscErrorCode MatSetFromOptions(Mat); 358 PETSC_EXTERN PetscErrorCode MatViewFromOptions(Mat, PetscObject, const char[]); 359 PETSC_EXTERN PetscErrorCode MatRegister(const char[], PetscErrorCode (*)(Mat)); 360 PETSC_EXTERN PetscErrorCode MatRegisterRootName(const char[], const char[], const char[]); 361 PETSC_EXTERN PetscErrorCode MatSetOptionsPrefix(Mat, const char[]); 362 PETSC_EXTERN PetscErrorCode MatSetOptionsPrefixFactor(Mat, const char[]); 363 PETSC_EXTERN PetscErrorCode MatAppendOptionsPrefixFactor(Mat, const char[]); 364 PETSC_EXTERN PetscErrorCode MatAppendOptionsPrefix(Mat, const char[]); 365 PETSC_EXTERN PetscErrorCode MatGetOptionsPrefix(Mat, const char *[]); 366 PETSC_EXTERN PetscErrorCode MatSetErrorIfFailure(Mat, PetscBool); 367 368 PETSC_EXTERN PetscFunctionList MatList; 369 PETSC_EXTERN PetscFunctionList MatColoringList; 370 PETSC_EXTERN PetscFunctionList MatPartitioningList; 371 372 /*E 373 MatStructure - Indicates if two matrices have the same nonzero structure 374 375 Values: 376 + `SAME_NONZERO_PATTERN` - the two matrices have identical nonzero patterns 377 . `DIFFERENT_NONZERO_PATTERN` - the two matrices may have different nonzero patterns 378 . `SUBSET_NONZERO_PATTERN` - the nonzero pattern of the second matrix is a subset of the nonzero pattern of the first matrix 379 - `UNKNOWN_NONZERO_PATTERN` - there is no known relationship between the nonzero patterns. In this case the implementations 380 may try to detect a relationship to optimize the operation 381 382 Level: beginner 383 384 .seealso: [](ch_matrices), `Mat`, `MatCopy()`, `MatAXPY()`, `MatAYPX()` 385 E*/ 386 typedef enum { 387 DIFFERENT_NONZERO_PATTERN, 388 SUBSET_NONZERO_PATTERN, 389 SAME_NONZERO_PATTERN, 390 UNKNOWN_NONZERO_PATTERN 391 } MatStructure; 392 PETSC_EXTERN const char *const MatStructures[]; 393 394 #if defined PETSC_HAVE_MKL_SPARSE 395 PETSC_EXTERN PetscErrorCode MatCreateSeqAIJMKL(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *); 396 PETSC_EXTERN PetscErrorCode MatCreateMPIAIJMKL(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *); 397 PETSC_EXTERN PetscErrorCode MatCreateBAIJMKL(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *); 398 PETSC_EXTERN PetscErrorCode MatCreateSeqBAIJMKL(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *); 399 #endif 400 401 PETSC_EXTERN PetscErrorCode MatCreateMPIAIJPERM(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *); 402 PETSC_EXTERN PetscErrorCode MatCreateSeqAIJPERM(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *); 403 404 PETSC_EXTERN PetscErrorCode MatCreateSeqSELL(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *); 405 PETSC_EXTERN PetscErrorCode MatCreateSELL(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *); 406 PETSC_EXTERN PetscErrorCode MatSeqSELLSetPreallocation(Mat, PetscInt, const PetscInt[]); 407 PETSC_EXTERN PetscErrorCode MatMPISELLSetPreallocation(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[]); 408 PETSC_EXTERN PetscErrorCode MatSeqSELLGetFillRatio(Mat, PetscReal *); 409 PETSC_EXTERN PetscErrorCode MatSeqSELLGetMaxSliceWidth(Mat, PetscInt *); 410 PETSC_EXTERN PetscErrorCode MatSeqSELLGetAvgSliceWidth(Mat, PetscReal *); 411 PETSC_EXTERN PetscErrorCode MatSeqSELLSetSliceHeight(Mat, PetscInt); 412 PETSC_EXTERN PetscErrorCode MatSeqSELLGetVarSliceSize(Mat, PetscReal *); 413 414 PETSC_EXTERN PetscErrorCode MatCreateSeqAIJSELL(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *); 415 PETSC_EXTERN PetscErrorCode MatCreateMPIAIJSELL(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *); 416 PETSC_EXTERN PetscErrorCode MatMPISELLGetLocalMatCondensed(Mat, MatReuse, IS *, IS *, Mat *); 417 PETSC_EXTERN PetscErrorCode MatMPISELLGetSeqSELL(Mat, Mat *, Mat *, const PetscInt *[]); 418 419 PETSC_EXTERN PetscErrorCode MatCreateSeqDense(MPI_Comm, PetscInt, PetscInt, PetscScalar[], Mat *); 420 PETSC_EXTERN PetscErrorCode MatCreateDense(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscScalar[], Mat *); 421 PETSC_EXTERN PetscErrorCode MatCreateSeqAIJ(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *); 422 PETSC_EXTERN PetscErrorCode MatCreateAIJ(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *); 423 PETSC_EXTERN PetscErrorCode MatCreateMPIAIJWithArrays(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[], Mat *); 424 PETSC_EXTERN PetscErrorCode MatUpdateMPIAIJWithArrays(Mat, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[]); 425 PETSC_EXTERN PetscErrorCode MatUpdateMPIAIJWithArray(Mat, const PetscScalar[]); 426 PETSC_EXTERN PetscErrorCode MatCreateMPIAIJWithSplitArrays(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt[], PetscInt[], PetscScalar[], PetscInt[], PetscInt[], PetscScalar[], Mat *); 427 PETSC_EXTERN PetscErrorCode MatCreateMPIAIJWithSeqAIJ(MPI_Comm, Mat, Mat, const PetscInt[], Mat *); 428 429 PETSC_EXTERN PetscErrorCode MatCreateSeqBAIJ(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *); 430 PETSC_EXTERN PetscErrorCode MatCreateBAIJ(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *); 431 PETSC_EXTERN PetscErrorCode MatCreateMPIBAIJWithArrays(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[], Mat *); 432 433 PETSC_EXTERN PetscErrorCode MatSetPreallocationCOO(Mat, PetscCount, PetscInt[], PetscInt[]); 434 PETSC_EXTERN PetscErrorCode MatSetPreallocationCOOLocal(Mat, PetscCount, PetscInt[], PetscInt[]); 435 PETSC_EXTERN PetscErrorCode MatSetValuesCOO(Mat, const PetscScalar[], InsertMode); 436 437 PETSC_EXTERN PetscErrorCode MatCreateMPIAdj(MPI_Comm, PetscInt, PetscInt, PetscInt[], PetscInt[], PetscInt[], Mat *); 438 PETSC_EXTERN PetscErrorCode MatCreateSeqSBAIJ(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *); 439 440 PETSC_EXTERN PetscErrorCode MatCreateSBAIJ(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *); 441 PETSC_EXTERN PetscErrorCode MatCreateMPISBAIJWithArrays(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[], Mat *); 442 PETSC_EXTERN PetscErrorCode MatSeqSBAIJSetPreallocationCSR(Mat, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[]); 443 PETSC_EXTERN PetscErrorCode MatMPISBAIJSetPreallocationCSR(Mat, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[]); 444 PETSC_EXTERN PetscErrorCode MatXAIJSetPreallocation(Mat, PetscInt, const PetscInt[], const PetscInt[], const PetscInt[], const PetscInt[]); 445 446 PETSC_EXTERN PetscErrorCode MatCreateShell(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, void *, Mat *); 447 PETSC_EXTERN PetscErrorCode MatCreateCentering(MPI_Comm, PetscInt, PetscInt, Mat *); 448 PETSC_EXTERN PetscErrorCode MatCreateNormal(Mat, Mat *); 449 PETSC_EXTERN PetscErrorCode MatCreateNormalHermitian(Mat, Mat *); 450 PETSC_EXTERN PetscErrorCode MatCreateLRC(Mat, Mat, Vec, Mat, Mat *); 451 PETSC_EXTERN PetscErrorCode MatLRCGetMats(Mat, Mat *, Mat *, Vec *, Mat *); 452 PETSC_EXTERN PetscErrorCode MatLRCSetMats(Mat, Mat, Mat, Vec, Mat); 453 PETSC_EXTERN PetscErrorCode MatCreateIS(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, ISLocalToGlobalMapping, ISLocalToGlobalMapping, Mat *); 454 PETSC_EXTERN PetscErrorCode MatCreateSeqAIJCRL(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *); 455 PETSC_EXTERN PetscErrorCode MatCreateMPIAIJCRL(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *); 456 457 PETSC_EXTERN PetscErrorCode MatCreateScatter(MPI_Comm, VecScatter, Mat *); 458 PETSC_EXTERN PetscErrorCode MatScatterSetVecScatter(Mat, VecScatter); 459 PETSC_EXTERN PetscErrorCode MatScatterGetVecScatter(Mat, VecScatter *); 460 PETSC_EXTERN PetscErrorCode MatCreateBlockMat(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt *, Mat *); 461 PETSC_EXTERN PetscErrorCode MatCompositeAddMat(Mat, Mat); 462 PETSC_EXTERN PetscErrorCode MatCompositeMerge(Mat); 463 typedef enum { 464 MAT_COMPOSITE_MERGE_RIGHT, 465 MAT_COMPOSITE_MERGE_LEFT 466 } MatCompositeMergeType; 467 PETSC_EXTERN PetscErrorCode MatCompositeSetMergeType(Mat, MatCompositeMergeType); 468 PETSC_EXTERN PetscErrorCode MatCreateComposite(MPI_Comm, PetscInt, const Mat *, Mat *); 469 typedef enum { 470 MAT_COMPOSITE_ADDITIVE, 471 MAT_COMPOSITE_MULTIPLICATIVE 472 } MatCompositeType; 473 PETSC_EXTERN PetscErrorCode MatCompositeSetType(Mat, MatCompositeType); 474 PETSC_EXTERN PetscErrorCode MatCompositeGetType(Mat, MatCompositeType *); 475 PETSC_EXTERN PetscErrorCode MatCompositeSetMatStructure(Mat, MatStructure); 476 PETSC_EXTERN PetscErrorCode MatCompositeGetMatStructure(Mat, MatStructure *); 477 PETSC_EXTERN PetscErrorCode MatCompositeGetNumberMat(Mat, PetscInt *); 478 PETSC_EXTERN PetscErrorCode MatCompositeGetMat(Mat, PetscInt, Mat *); 479 PETSC_EXTERN PetscErrorCode MatCompositeSetScalings(Mat, const PetscScalar *); 480 481 PETSC_EXTERN PetscErrorCode MatCreateFFT(MPI_Comm, PetscInt, const PetscInt[], MatType, Mat *); 482 PETSC_EXTERN PetscErrorCode MatCreateSeqCUFFT(MPI_Comm, PetscInt, const PetscInt[], Mat *); 483 484 PETSC_EXTERN PetscErrorCode MatCreateTranspose(Mat, Mat *); 485 PETSC_EXTERN PetscErrorCode MatTransposeGetMat(Mat, Mat *); 486 PETSC_EXTERN PetscErrorCode MatCreateHermitianTranspose(Mat, Mat *); 487 PETSC_EXTERN PetscErrorCode MatHermitianTransposeGetMat(Mat, Mat *); 488 PETSC_EXTERN PetscErrorCode MatNormalGetMat(Mat, Mat *); 489 PETSC_EXTERN PetscErrorCode MatNormalHermitianGetMat(Mat, Mat *); 490 PETSC_EXTERN PetscErrorCode MatCreateSubMatrixVirtual(Mat, IS, IS, Mat *); 491 PETSC_EXTERN PetscErrorCode MatSubMatrixVirtualUpdate(Mat, Mat, IS, IS); 492 PETSC_EXTERN PetscErrorCode MatCreateLocalRef(Mat, IS, IS, Mat *); 493 PETSC_EXTERN PetscErrorCode MatCreateConstantDiagonal(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscScalar, Mat *); 494 PETSC_EXTERN PetscErrorCode MatCreateDiagonal(Vec, Mat *); 495 PETSC_EXTERN PetscErrorCode MatDiagonalGetDiagonal(Mat, Vec *); 496 PETSC_EXTERN PetscErrorCode MatDiagonalRestoreDiagonal(Mat, Vec *); 497 PETSC_EXTERN PetscErrorCode MatDiagonalGetInverseDiagonal(Mat, Vec *); 498 PETSC_EXTERN PetscErrorCode MatDiagonalRestoreInverseDiagonal(Mat, Vec *); 499 500 #if defined(PETSC_HAVE_HYPRE) 501 PETSC_EXTERN PetscErrorCode MatHYPRESetPreallocation(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[]); 502 #endif 503 504 PETSC_EXTERN PetscErrorCode MatPythonSetType(Mat, const char[]); 505 PETSC_EXTERN PetscErrorCode MatPythonGetType(Mat, const char *[]); 506 507 PETSC_EXTERN PetscErrorCode MatResetPreallocation(Mat); 508 PETSC_EXTERN PetscErrorCode MatSetUp(Mat); 509 PETSC_EXTERN PetscErrorCode MatDestroy(Mat *); 510 PETSC_EXTERN PetscErrorCode MatGetNonzeroState(Mat, PetscObjectState *); 511 512 PETSC_EXTERN PetscErrorCode MatConjugate(Mat); 513 PETSC_EXTERN PetscErrorCode MatRealPart(Mat); 514 PETSC_EXTERN PetscErrorCode MatImaginaryPart(Mat); 515 PETSC_EXTERN PetscErrorCode MatGetDiagonalBlock(Mat, Mat *); 516 PETSC_EXTERN PetscErrorCode MatGetTrace(Mat, PetscScalar *); 517 PETSC_EXTERN PetscErrorCode MatInvertBlockDiagonal(Mat, const PetscScalar **); 518 PETSC_EXTERN PetscErrorCode MatInvertVariableBlockDiagonal(Mat, PetscInt, const PetscInt *, PetscScalar *); 519 PETSC_EXTERN PetscErrorCode MatInvertBlockDiagonalMat(Mat, Mat); 520 PETSC_EXTERN PetscErrorCode MatInvertVariableBlockEnvelope(Mat, MatReuse, Mat *); 521 PETSC_EXTERN PetscErrorCode MatComputeVariableBlockEnvelope(Mat); 522 523 PETSC_EXTERN PetscErrorCode MatSetValues(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[], const PetscScalar[], InsertMode); 524 PETSC_EXTERN PetscErrorCode MatSetValuesIS(Mat, IS, IS, const PetscScalar[], InsertMode); 525 PETSC_EXTERN PetscErrorCode MatSetValuesBlocked(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[], const PetscScalar[], InsertMode); 526 PETSC_EXTERN PetscErrorCode MatSetValuesRow(Mat, PetscInt, const PetscScalar[]); 527 PETSC_EXTERN PetscErrorCode MatSetValuesRowLocal(Mat, PetscInt, const PetscScalar[]); 528 PETSC_EXTERN PetscErrorCode MatSetValuesBatch(Mat, PetscInt, PetscInt, PetscInt[], const PetscScalar[]); 529 PETSC_EXTERN PetscErrorCode MatSetRandom(Mat, PetscRandom); 530 531 /*S 532 MatStencil - Data structure (C struct) for storing information about rows and 533 columns of a matrix as indexed on an associated grid. These are arguments to `MatSetStencil()` and `MatSetBlockStencil()` 534 535 Level: beginner 536 537 Notes: 538 The i,j, and k represent the logical coordinates over the entire grid (for 2 and 1 dimensional problems the k and j entries are ignored). 539 The c represents the the degrees of freedom at each grid point (the dof argument to `DMDASetDOF()`). If dof is 1 then this entry is ignored. 540 541 For stencil access to vectors see `DMDAVecGetArray()`, `DMDAVecGetArrayF90()`. 542 543 For staggered grids, see `DMStagStencil` 544 545 Fortran Note: 546 See `MatSetValuesStencil()` for details. 547 548 .seealso: [](ch_matrices), `Mat`, `MatSetValuesStencil()`, `MatSetStencil()`, `MatSetValuesBlockedStencil()`, `DMDAVecGetArray()`, `DMDAVecGetArrayF90()`, 549 `DMStagStencil` 550 S*/ 551 typedef struct { 552 PetscInt k, j, i, c; 553 } MatStencil; 554 555 PETSC_EXTERN PetscErrorCode MatSetValuesStencil(Mat, PetscInt, const MatStencil[], PetscInt, const MatStencil[], const PetscScalar[], InsertMode); 556 PETSC_EXTERN PetscErrorCode MatSetValuesBlockedStencil(Mat, PetscInt, const MatStencil[], PetscInt, const MatStencil[], const PetscScalar[], InsertMode); 557 PETSC_EXTERN PetscErrorCode MatSetStencil(Mat, PetscInt, const PetscInt[], const PetscInt[], PetscInt); 558 559 /*E 560 MatAssemblyType - Indicates if the process of setting values into the matrix is complete, and the matrix is ready for use 561 562 Values: 563 + `MAT_FLUSH_ASSEMBLY` - you will continue to put values into the matrix 564 - `MAT_FINAL_ASSEMBLY` - you wish to use the matrix with the values currently inserted 565 566 Level: beginner 567 568 .seealso: [](ch_matrices), `Mat`, `MatSetValues`, `MatAssemblyBegin()`, `MatAssemblyEnd()` 569 E*/ 570 typedef enum { 571 MAT_FLUSH_ASSEMBLY = 1, 572 MAT_FINAL_ASSEMBLY = 0 573 } MatAssemblyType; 574 PETSC_EXTERN PetscErrorCode MatAssemblyBegin(Mat, MatAssemblyType); 575 PETSC_EXTERN PetscErrorCode MatAssemblyEnd(Mat, MatAssemblyType); 576 PETSC_EXTERN PetscErrorCode MatAssembled(Mat, PetscBool *); 577 578 /*E 579 MatOption - Options that may be set for a matrix that indicate properties of the matrix or affect its behavior or storage 580 581 Level: beginner 582 583 Note: 584 See `MatSetOption()` for the use of the options 585 586 Developer Note: 587 Entries that are negative need not be called collectively by all processes. 588 589 .seealso: [](ch_matrices), `Mat`, `MatSetOption()` 590 E*/ 591 typedef enum { 592 MAT_OPTION_MIN = -3, 593 MAT_UNUSED_NONZERO_LOCATION_ERR = -2, 594 MAT_ROW_ORIENTED = -1, 595 MAT_SYMMETRIC = 1, 596 MAT_STRUCTURALLY_SYMMETRIC = 2, 597 MAT_FORCE_DIAGONAL_ENTRIES = 3, 598 MAT_IGNORE_OFF_PROC_ENTRIES = 4, 599 MAT_USE_HASH_TABLE = 5, 600 MAT_KEEP_NONZERO_PATTERN = 6, 601 MAT_IGNORE_ZERO_ENTRIES = 7, 602 MAT_USE_INODES = 8, 603 MAT_HERMITIAN = 9, 604 MAT_SYMMETRY_ETERNAL = 10, 605 MAT_NEW_NONZERO_LOCATION_ERR = 11, 606 MAT_IGNORE_LOWER_TRIANGULAR = 12, 607 MAT_ERROR_LOWER_TRIANGULAR = 13, 608 MAT_GETROW_UPPERTRIANGULAR = 14, 609 MAT_SPD = 15, 610 MAT_NO_OFF_PROC_ZERO_ROWS = 16, 611 MAT_NO_OFF_PROC_ENTRIES = 17, 612 MAT_NEW_NONZERO_LOCATIONS = 18, 613 MAT_NEW_NONZERO_ALLOCATION_ERR = 19, 614 MAT_SUBSET_OFF_PROC_ENTRIES = 20, 615 MAT_SUBMAT_SINGLEIS = 21, 616 MAT_STRUCTURE_ONLY = 22, 617 MAT_SORTED_FULL = 23, 618 MAT_FORM_EXPLICIT_TRANSPOSE = 24, 619 MAT_STRUCTURAL_SYMMETRY_ETERNAL = 25, 620 MAT_SPD_ETERNAL = 26, 621 MAT_OPTION_MAX = 27 622 } MatOption; 623 624 PETSC_EXTERN const char *const *MatOptions; 625 PETSC_EXTERN PetscErrorCode MatSetOption(Mat, MatOption, PetscBool); 626 PETSC_EXTERN PetscErrorCode MatGetOption(Mat, MatOption, PetscBool *); 627 PETSC_EXTERN PetscErrorCode MatPropagateSymmetryOptions(Mat, Mat); 628 PETSC_EXTERN PetscErrorCode MatGetType(Mat, MatType *); 629 630 PETSC_EXTERN PetscErrorCode MatGetValues(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[], PetscScalar[]); 631 PETSC_EXTERN PetscErrorCode MatGetRow(Mat, PetscInt, PetscInt *, const PetscInt *[], const PetscScalar *[]); 632 PETSC_EXTERN PetscErrorCode MatRestoreRow(Mat, PetscInt, PetscInt *, const PetscInt *[], const PetscScalar *[]); 633 PETSC_EXTERN PetscErrorCode MatGetRowUpperTriangular(Mat); 634 PETSC_EXTERN PetscErrorCode MatRestoreRowUpperTriangular(Mat); 635 PETSC_EXTERN PetscErrorCode MatGetColumnVector(Mat, Vec, PetscInt); 636 PETSC_EXTERN PetscErrorCode MatSeqAIJGetArray(Mat, PetscScalar *[]); 637 PETSC_EXTERN PetscErrorCode MatSeqAIJGetArrayRead(Mat, const PetscScalar *[]); 638 PETSC_EXTERN PetscErrorCode MatSeqAIJGetArrayWrite(Mat, PetscScalar *[]); 639 PETSC_EXTERN PetscErrorCode MatSeqAIJRestoreArray(Mat, PetscScalar *[]); 640 PETSC_EXTERN PetscErrorCode MatSeqAIJRestoreArrayRead(Mat, const PetscScalar *[]); 641 PETSC_EXTERN PetscErrorCode MatSeqAIJRestoreArrayWrite(Mat, PetscScalar *[]); 642 PETSC_EXTERN PetscErrorCode MatSeqAIJGetMaxRowNonzeros(Mat, PetscInt *); 643 PETSC_EXTERN PetscErrorCode MatSeqAIJSetValuesLocalFast(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[], const PetscScalar[], InsertMode); 644 PETSC_EXTERN PetscErrorCode MatSeqAIJSetType(Mat, MatType); 645 PETSC_EXTERN PetscErrorCode MatSeqAIJKron(Mat, Mat, MatReuse, Mat *); 646 PETSC_EXTERN PetscErrorCode MatSeqAIJRegister(const char[], PetscErrorCode (*)(Mat, MatType, MatReuse, Mat *)); 647 PETSC_EXTERN PetscFunctionList MatSeqAIJList; 648 PETSC_EXTERN PetscErrorCode MatSeqBAIJGetArray(Mat, PetscScalar *[]); 649 PETSC_EXTERN PetscErrorCode MatSeqBAIJRestoreArray(Mat, PetscScalar *[]); 650 PETSC_EXTERN PetscErrorCode MatSeqSBAIJGetArray(Mat, PetscScalar *[]); 651 PETSC_EXTERN PetscErrorCode MatSeqSBAIJRestoreArray(Mat, PetscScalar *[]); 652 PETSC_EXTERN PetscErrorCode MatDenseGetArray(Mat, PetscScalar *[]); 653 PETSC_EXTERN PetscErrorCode MatDenseRestoreArray(Mat, PetscScalar *[]); 654 PETSC_EXTERN PetscErrorCode MatDensePlaceArray(Mat, const PetscScalar[]); 655 PETSC_EXTERN PetscErrorCode MatDenseReplaceArray(Mat, const PetscScalar[]); 656 PETSC_EXTERN PetscErrorCode MatDenseResetArray(Mat); 657 PETSC_EXTERN PetscErrorCode MatDenseGetArrayRead(Mat, const PetscScalar *[]); 658 PETSC_EXTERN PetscErrorCode MatDenseRestoreArrayRead(Mat, const PetscScalar *[]); 659 PETSC_EXTERN PetscErrorCode MatDenseGetArrayWrite(Mat, PetscScalar *[]); 660 PETSC_EXTERN PetscErrorCode MatDenseRestoreArrayWrite(Mat, PetscScalar *[]); 661 PETSC_EXTERN PetscErrorCode MatDenseGetArrayAndMemType(Mat, PetscScalar *[], PetscMemType *); 662 PETSC_EXTERN PetscErrorCode MatDenseRestoreArrayAndMemType(Mat, PetscScalar *[]); 663 PETSC_EXTERN PetscErrorCode MatDenseGetArrayReadAndMemType(Mat, const PetscScalar *[], PetscMemType *); 664 PETSC_EXTERN PetscErrorCode MatDenseRestoreArrayReadAndMemType(Mat, const PetscScalar *[]); 665 PETSC_EXTERN PetscErrorCode MatDenseGetArrayWriteAndMemType(Mat, PetscScalar *[], PetscMemType *); 666 PETSC_EXTERN PetscErrorCode MatDenseRestoreArrayWriteAndMemType(Mat, PetscScalar *[]); 667 PETSC_EXTERN PetscErrorCode MatGetBlockSize(Mat, PetscInt *); 668 PETSC_EXTERN PetscErrorCode MatSetBlockSize(Mat, PetscInt); 669 PETSC_EXTERN PetscErrorCode MatGetBlockSizes(Mat, PetscInt *, PetscInt *); 670 PETSC_EXTERN PetscErrorCode MatSetBlockSizes(Mat, PetscInt, PetscInt); 671 PETSC_EXTERN PetscErrorCode MatSetBlockSizesFromMats(Mat, Mat, Mat); 672 PETSC_EXTERN PetscErrorCode MatSetVariableBlockSizes(Mat, PetscInt, PetscInt *); 673 PETSC_EXTERN PetscErrorCode MatGetVariableBlockSizes(Mat, PetscInt *, const PetscInt **); 674 675 PETSC_EXTERN PetscErrorCode MatDenseGetColumn(Mat, PetscInt, PetscScalar *[]); 676 PETSC_EXTERN PetscErrorCode MatDenseRestoreColumn(Mat, PetscScalar *[]); 677 PETSC_EXTERN PetscErrorCode MatDenseGetColumnVec(Mat, PetscInt, Vec *); 678 PETSC_EXTERN PetscErrorCode MatDenseRestoreColumnVec(Mat, PetscInt, Vec *); 679 PETSC_EXTERN PetscErrorCode MatDenseGetColumnVecRead(Mat, PetscInt, Vec *); 680 PETSC_EXTERN PetscErrorCode MatDenseRestoreColumnVecRead(Mat, PetscInt, Vec *); 681 PETSC_EXTERN PetscErrorCode MatDenseGetColumnVecWrite(Mat, PetscInt, Vec *); 682 PETSC_EXTERN PetscErrorCode MatDenseRestoreColumnVecWrite(Mat, PetscInt, Vec *); 683 PETSC_EXTERN PetscErrorCode MatDenseGetSubMatrix(Mat, PetscInt, PetscInt, PetscInt, PetscInt, Mat *); 684 PETSC_EXTERN PetscErrorCode MatDenseRestoreSubMatrix(Mat, Mat *); 685 686 PETSC_EXTERN PetscErrorCode MatMult(Mat, Vec, Vec); 687 PETSC_EXTERN PetscErrorCode MatMultDiagonalBlock(Mat, Vec, Vec); 688 PETSC_EXTERN PetscErrorCode MatMultAdd(Mat, Vec, Vec, Vec); 689 PETSC_EXTERN PetscErrorCode MatMultTranspose(Mat, Vec, Vec); 690 PETSC_EXTERN PetscErrorCode MatMultHermitianTranspose(Mat, Vec, Vec); 691 PETSC_EXTERN PetscErrorCode MatIsTranspose(Mat, Mat, PetscReal, PetscBool *); 692 PETSC_EXTERN PetscErrorCode MatIsHermitianTranspose(Mat, Mat, PetscReal, PetscBool *); 693 PETSC_EXTERN PetscErrorCode MatMultTransposeAdd(Mat, Vec, Vec, Vec); 694 PETSC_EXTERN PetscErrorCode MatMultHermitianTransposeAdd(Mat, Vec, Vec, Vec); 695 PETSC_EXTERN PetscErrorCode MatMatSolve(Mat, Mat, Mat); 696 PETSC_EXTERN PetscErrorCode MatMatSolveTranspose(Mat, Mat, Mat); 697 PETSC_EXTERN PetscErrorCode MatMatTransposeSolve(Mat, Mat, Mat); 698 PETSC_EXTERN PetscErrorCode MatResidual(Mat, Vec, Vec, Vec); 699 700 /*E 701 MatDuplicateOption - Indicates if a duplicated sparse matrix should have 702 its numerical values copied over or just its nonzero structure. 703 704 Values: 705 + `MAT_DO_NOT_COPY_VALUES` - Create a matrix using the same nonzero pattern as the original matrix, 706 with zeros for the numerical values 707 . `MAT_COPY_VALUES` - Create a matrix with the same nonzero pattern as the original matrix 708 and with the same numerical values. 709 - `MAT_SHARE_NONZERO_PATTERN` - Create a matrix that shares the nonzero structure with the previous matrix 710 and does not copy it, using zeros for the numerical values. The parent and 711 child matrices will share their index (i and j) arrays, and you cannot 712 insert new nonzero entries into either matrix 713 714 Level: beginner 715 716 Note: 717 Many matrix types (including `MATSEQAIJ`) do not support the `MAT_SHARE_NONZERO_PATTERN` optimization; in 718 this case the behavior is as if `MAT_DO_NOT_COPY_VALUES` has been specified. 719 720 .seealso: [](ch_matrices), `Mat`, `MatDuplicate()` 721 E*/ 722 typedef enum { 723 MAT_DO_NOT_COPY_VALUES, 724 MAT_COPY_VALUES, 725 MAT_SHARE_NONZERO_PATTERN 726 } MatDuplicateOption; 727 728 PETSC_EXTERN PetscErrorCode MatConvert(Mat, MatType, MatReuse, Mat *); 729 PETSC_EXTERN PetscErrorCode MatDuplicate(Mat, MatDuplicateOption, Mat *); 730 731 PETSC_EXTERN PetscErrorCode MatCopy(Mat, Mat, MatStructure); 732 PETSC_EXTERN PetscErrorCode MatView(Mat, PetscViewer); 733 PETSC_EXTERN PetscErrorCode MatIsSymmetric(Mat, PetscReal, PetscBool *); 734 PETSC_EXTERN PetscErrorCode MatIsStructurallySymmetric(Mat, PetscBool *); 735 PETSC_EXTERN PetscErrorCode MatIsHermitian(Mat, PetscReal, PetscBool *); 736 PETSC_EXTERN PetscErrorCode MatIsSymmetricKnown(Mat, PetscBool *, PetscBool *); 737 PETSC_EXTERN PetscErrorCode MatIsHermitianKnown(Mat, PetscBool *, PetscBool *); 738 PETSC_EXTERN PetscErrorCode MatIsStructurallySymmetricKnown(Mat, PetscBool *, PetscBool *); 739 PETSC_EXTERN PetscErrorCode MatIsSPDKnown(Mat, PetscBool *, PetscBool *); 740 PETSC_EXTERN PetscErrorCode MatMissingDiagonal(Mat, PetscBool *, PetscInt *); 741 PETSC_EXTERN PetscErrorCode MatLoad(Mat, PetscViewer); 742 743 PETSC_EXTERN PetscErrorCode MatGetRowIJ(Mat, PetscInt, PetscBool, PetscBool, PetscInt *, const PetscInt *[], const PetscInt *[], PetscBool *); 744 PETSC_EXTERN PetscErrorCode MatRestoreRowIJ(Mat, PetscInt, PetscBool, PetscBool, PetscInt *, const PetscInt *[], const PetscInt *[], PetscBool *); 745 PETSC_EXTERN PetscErrorCode MatGetColumnIJ(Mat, PetscInt, PetscBool, PetscBool, PetscInt *, const PetscInt *[], const PetscInt *[], PetscBool *); 746 PETSC_EXTERN PetscErrorCode MatRestoreColumnIJ(Mat, PetscInt, PetscBool, PetscBool, PetscInt *, const PetscInt *[], const PetscInt *[], PetscBool *); 747 748 /*S 749 MatInfo - Context of matrix information, used with `MatGetInfo()` 750 751 Level: intermediate 752 753 Fortran Note: 754 Information is stored as a double-precision array of dimension `MAT_INFO_SIZE` 755 756 .seealso: [](ch_matrices), `Mat`, `MatGetInfo()`, `MatInfoType` 757 S*/ 758 typedef struct { 759 PetscLogDouble block_size; /* block size */ 760 PetscLogDouble nz_allocated, nz_used, nz_unneeded; /* number of nonzeros */ 761 PetscLogDouble memory; /* memory allocated */ 762 PetscLogDouble assemblies; /* number of matrix assemblies called */ 763 PetscLogDouble mallocs; /* number of mallocs during MatSetValues() */ 764 PetscLogDouble fill_ratio_given, fill_ratio_needed; /* fill ratio for LU/ILU */ 765 PetscLogDouble factor_mallocs; /* number of mallocs during factorization */ 766 } MatInfo; 767 768 /*E 769 MatInfoType - Indicates if you want information about the local part of the matrix, 770 the entire parallel matrix or the maximum over all the local parts. 771 772 Values: 773 + `MAT_LOCAL` - values for each MPI process part of the matrix 774 . `MAT_GLOBAL_MAX` - maximum of each value over all MPI processes 775 - `MAT_GLOBAL_SUM` - sum of each value over all MPI processes 776 777 Level: beginner 778 779 .seealso: [](ch_matrices), `MatGetInfo()`, `MatInfo` 780 E*/ 781 typedef enum { 782 MAT_LOCAL = 1, 783 MAT_GLOBAL_MAX = 2, 784 MAT_GLOBAL_SUM = 3 785 } MatInfoType; 786 PETSC_EXTERN PetscErrorCode MatGetInfo(Mat, MatInfoType, MatInfo *); 787 PETSC_EXTERN PetscErrorCode MatGetDiagonal(Mat, Vec); 788 PETSC_EXTERN PetscErrorCode MatGetRowMax(Mat, Vec, PetscInt[]); 789 PETSC_EXTERN PetscErrorCode MatGetRowMin(Mat, Vec, PetscInt[]); 790 PETSC_EXTERN PetscErrorCode MatGetRowMaxAbs(Mat, Vec, PetscInt[]); 791 PETSC_EXTERN PetscErrorCode MatGetRowMinAbs(Mat, Vec, PetscInt[]); 792 PETSC_EXTERN PetscErrorCode MatGetRowSum(Mat, Vec); 793 PETSC_EXTERN PetscErrorCode MatTranspose(Mat, MatReuse, Mat *); 794 PETSC_EXTERN PetscErrorCode MatTransposeSymbolic(Mat, Mat *); 795 PETSC_EXTERN PetscErrorCode MatTransposeSetPrecursor(Mat, Mat); 796 PETSC_EXTERN PetscErrorCode MatHermitianTranspose(Mat, MatReuse, Mat *); 797 PETSC_EXTERN PetscErrorCode MatPermute(Mat, IS, IS, Mat *); 798 PETSC_EXTERN PetscErrorCode MatDiagonalScale(Mat, Vec, Vec); 799 PETSC_EXTERN PetscErrorCode MatDiagonalSet(Mat, Vec, InsertMode); 800 801 PETSC_EXTERN PetscErrorCode MatEqual(Mat, Mat, PetscBool *); 802 PETSC_EXTERN PetscErrorCode MatMultEqual(Mat, Mat, PetscInt, PetscBool *); 803 PETSC_EXTERN PetscErrorCode MatMultAddEqual(Mat, Mat, PetscInt, PetscBool *); 804 PETSC_EXTERN PetscErrorCode MatMultTransposeEqual(Mat, Mat, PetscInt, PetscBool *); 805 PETSC_EXTERN PetscErrorCode MatMultTransposeAddEqual(Mat, Mat, PetscInt, PetscBool *); 806 PETSC_EXTERN PetscErrorCode MatMultHermitianTransposeEqual(Mat, Mat, PetscInt, PetscBool *); 807 PETSC_EXTERN PetscErrorCode MatMultHermitianTransposeAddEqual(Mat, Mat, PetscInt, PetscBool *); 808 PETSC_EXTERN PetscErrorCode MatMatMultEqual(Mat, Mat, Mat, PetscInt, PetscBool *); 809 PETSC_EXTERN PetscErrorCode MatTransposeMatMultEqual(Mat, Mat, Mat, PetscInt, PetscBool *); 810 PETSC_EXTERN PetscErrorCode MatMatTransposeMultEqual(Mat, Mat, Mat, PetscInt, PetscBool *); 811 PETSC_EXTERN PetscErrorCode MatPtAPMultEqual(Mat, Mat, Mat, PetscInt, PetscBool *); 812 PETSC_EXTERN PetscErrorCode MatRARtMultEqual(Mat, Mat, Mat, PetscInt, PetscBool *); 813 PETSC_EXTERN PetscErrorCode MatIsLinear(Mat, PetscInt, PetscBool *); 814 815 PETSC_EXTERN PetscErrorCode MatNorm(Mat, NormType, PetscReal *); 816 PETSC_EXTERN PetscErrorCode MatGetColumnNorms(Mat, NormType, PetscReal *); 817 PETSC_EXTERN PetscErrorCode MatGetColumnSums(Mat, PetscScalar *); 818 PETSC_EXTERN PetscErrorCode MatGetColumnSumsRealPart(Mat, PetscReal *); 819 PETSC_EXTERN PetscErrorCode MatGetColumnSumsImaginaryPart(Mat, PetscReal *); 820 PETSC_EXTERN PetscErrorCode MatGetColumnMeans(Mat, PetscScalar *); 821 PETSC_EXTERN PetscErrorCode MatGetColumnMeansRealPart(Mat, PetscReal *); 822 PETSC_EXTERN PetscErrorCode MatGetColumnMeansImaginaryPart(Mat, PetscReal *); 823 PETSC_EXTERN PetscErrorCode MatGetColumnReductions(Mat, PetscInt, PetscReal *); 824 PETSC_EXTERN PetscErrorCode MatZeroEntries(Mat); 825 PETSC_EXTERN PetscErrorCode MatSetInf(Mat); 826 PETSC_EXTERN PetscErrorCode MatZeroRows(Mat, PetscInt, const PetscInt[], PetscScalar, Vec, Vec); 827 PETSC_EXTERN PetscErrorCode MatZeroRowsIS(Mat, IS, PetscScalar, Vec, Vec); 828 PETSC_EXTERN PetscErrorCode MatZeroRowsStencil(Mat, PetscInt, const MatStencil[], PetscScalar, Vec, Vec); 829 PETSC_EXTERN PetscErrorCode MatZeroRowsColumnsStencil(Mat, PetscInt, const MatStencil[], PetscScalar, Vec, Vec); 830 PETSC_EXTERN PetscErrorCode MatZeroRowsColumns(Mat, PetscInt, const PetscInt[], PetscScalar, Vec, Vec); 831 PETSC_EXTERN PetscErrorCode MatZeroRowsColumnsIS(Mat, IS, PetscScalar, Vec, Vec); 832 833 PETSC_EXTERN PetscErrorCode MatGetSize(Mat, PetscInt *, PetscInt *); 834 PETSC_EXTERN PetscErrorCode MatGetLocalSize(Mat, PetscInt *, PetscInt *); 835 PETSC_EXTERN PetscErrorCode MatGetOwnershipRange(Mat, PetscInt *, PetscInt *); 836 PETSC_EXTERN PetscErrorCode MatGetOwnershipRanges(Mat, const PetscInt **); 837 PETSC_EXTERN PetscErrorCode MatGetOwnershipRangeColumn(Mat, PetscInt *, PetscInt *); 838 PETSC_EXTERN PetscErrorCode MatGetOwnershipRangesColumn(Mat, const PetscInt **); 839 PETSC_EXTERN PetscErrorCode MatGetOwnershipIS(Mat, IS *, IS *); 840 841 PETSC_EXTERN PetscErrorCode MatCreateSubMatrices(Mat, PetscInt, const IS[], const IS[], MatReuse, Mat *[]); 842 PETSC_DEPRECATED_FUNCTION(3, 8, 0, "MatCreateSubMatrices()", ) static inline PetscErrorCode MatGetSubMatrices(Mat mat, PetscInt n, const IS irow[], const IS icol[], MatReuse scall, Mat *submat[]) 843 { 844 return MatCreateSubMatrices(mat, n, irow, icol, scall, submat); 845 } 846 PETSC_EXTERN PetscErrorCode MatCreateSubMatricesMPI(Mat, PetscInt, const IS[], const IS[], MatReuse, Mat *[]); 847 PETSC_DEPRECATED_FUNCTION(3, 8, 0, "MatCreateSubMatricesMPI()", ) static inline PetscErrorCode MatGetSubMatricesMPI(Mat mat, PetscInt n, const IS irow[], const IS icol[], MatReuse scall, Mat *submat[]) 848 { 849 return MatCreateSubMatricesMPI(mat, n, irow, icol, scall, submat); 850 } 851 PETSC_EXTERN PetscErrorCode MatDestroyMatrices(PetscInt, Mat *[]); 852 PETSC_EXTERN PetscErrorCode MatDestroySubMatrices(PetscInt, Mat *[]); 853 PETSC_EXTERN PetscErrorCode MatCreateSubMatrix(Mat, IS, IS, MatReuse, Mat *); 854 PETSC_DEPRECATED_FUNCTION(3, 8, 0, "MatCreateSubMatrix()", ) static inline PetscErrorCode MatGetSubMatrix(Mat mat, IS isrow, IS iscol, MatReuse cll, Mat *newmat) 855 { 856 return MatCreateSubMatrix(mat, isrow, iscol, cll, newmat); 857 } 858 PETSC_EXTERN PetscErrorCode MatGetLocalSubMatrix(Mat, IS, IS, Mat *); 859 PETSC_EXTERN PetscErrorCode MatRestoreLocalSubMatrix(Mat, IS, IS, Mat *); 860 PETSC_EXTERN PetscErrorCode MatGetSeqNonzeroStructure(Mat, Mat *); 861 PETSC_EXTERN PetscErrorCode MatDestroySeqNonzeroStructure(Mat *); 862 863 PETSC_EXTERN PetscErrorCode MatCreateMPIAIJSumSeqAIJ(MPI_Comm, Mat, PetscInt, PetscInt, MatReuse, Mat *); 864 PETSC_EXTERN PetscErrorCode MatCreateMPIAIJSumSeqAIJSymbolic(MPI_Comm, Mat, PetscInt, PetscInt, Mat *); 865 PETSC_EXTERN PetscErrorCode MatCreateMPIAIJSumSeqAIJNumeric(Mat, Mat); 866 PETSC_EXTERN PetscErrorCode MatMPIAIJGetLocalMat(Mat, MatReuse, Mat *); 867 PETSC_EXTERN PetscErrorCode MatAIJGetLocalMat(Mat, Mat *); 868 PETSC_EXTERN PetscErrorCode MatMPIAIJGetLocalMatCondensed(Mat, MatReuse, IS *, IS *, Mat *); 869 PETSC_EXTERN PetscErrorCode MatMPIAIJGetLocalMatMerge(Mat, MatReuse, IS *, Mat *); 870 PETSC_EXTERN PetscErrorCode MatMPIAIJGetNumberNonzeros(Mat, PetscCount *); 871 PETSC_EXTERN PetscErrorCode MatGetBrowsOfAcols(Mat, Mat, MatReuse, IS *, IS *, Mat *); 872 PETSC_EXTERN PetscErrorCode MatGetGhosts(Mat, PetscInt *, const PetscInt *[]); 873 874 PETSC_EXTERN PetscErrorCode MatIncreaseOverlap(Mat, PetscInt, IS[], PetscInt); 875 PETSC_EXTERN PetscErrorCode MatIncreaseOverlapSplit(Mat mat, PetscInt n, IS is[], PetscInt ov); 876 PETSC_EXTERN PetscErrorCode MatMPIAIJSetUseScalableIncreaseOverlap(Mat, PetscBool); 877 878 PETSC_EXTERN PetscErrorCode MatMatMult(Mat, Mat, MatReuse, PetscReal, Mat *); 879 880 PETSC_EXTERN PetscErrorCode MatMatMatMult(Mat, Mat, Mat, MatReuse, PetscReal, Mat *); 881 PETSC_EXTERN PetscErrorCode MatGalerkin(Mat, Mat, Mat, MatReuse, PetscReal, Mat *); 882 883 PETSC_EXTERN PetscErrorCode MatPtAP(Mat, Mat, MatReuse, PetscReal, Mat *); 884 PETSC_EXTERN PetscErrorCode MatRARt(Mat, Mat, MatReuse, PetscReal, Mat *); 885 886 PETSC_EXTERN PetscErrorCode MatTransposeMatMult(Mat, Mat, MatReuse, PetscReal, Mat *); 887 PETSC_EXTERN PetscErrorCode MatMatTransposeMult(Mat, Mat, MatReuse, PetscReal, Mat *); 888 889 PETSC_EXTERN PetscErrorCode MatAXPY(Mat, PetscScalar, Mat, MatStructure); 890 PETSC_EXTERN PetscErrorCode MatAYPX(Mat, PetscScalar, Mat, MatStructure); 891 892 PETSC_EXTERN PetscErrorCode MatScale(Mat, PetscScalar); 893 PETSC_EXTERN PetscErrorCode MatShift(Mat, PetscScalar); 894 895 PETSC_EXTERN PetscErrorCode MatSetLocalToGlobalMapping(Mat, ISLocalToGlobalMapping, ISLocalToGlobalMapping); 896 PETSC_EXTERN PetscErrorCode MatGetLocalToGlobalMapping(Mat, ISLocalToGlobalMapping *, ISLocalToGlobalMapping *); 897 PETSC_EXTERN PetscErrorCode MatGetLayouts(Mat, PetscLayout *, PetscLayout *); 898 PETSC_EXTERN PetscErrorCode MatSetLayouts(Mat, PetscLayout, PetscLayout); 899 PETSC_EXTERN PetscErrorCode MatZeroRowsLocal(Mat, PetscInt, const PetscInt[], PetscScalar, Vec, Vec); 900 PETSC_EXTERN PetscErrorCode MatZeroRowsLocalIS(Mat, IS, PetscScalar, Vec, Vec); 901 PETSC_EXTERN PetscErrorCode MatZeroRowsColumnsLocal(Mat, PetscInt, const PetscInt[], PetscScalar, Vec, Vec); 902 PETSC_EXTERN PetscErrorCode MatZeroRowsColumnsLocalIS(Mat, IS, PetscScalar, Vec, Vec); 903 PETSC_EXTERN PetscErrorCode MatGetValuesLocal(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[], PetscScalar[]); 904 PETSC_EXTERN PetscErrorCode MatSetValuesLocal(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[], const PetscScalar[], InsertMode); 905 PETSC_EXTERN PetscErrorCode MatSetValuesBlockedLocal(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[], const PetscScalar[], InsertMode); 906 907 PETSC_EXTERN PetscErrorCode MatStashSetInitialSize(Mat, PetscInt, PetscInt); 908 PETSC_EXTERN PetscErrorCode MatStashGetInfo(Mat, PetscInt *, PetscInt *, PetscInt *, PetscInt *); 909 910 PETSC_EXTERN PetscErrorCode MatInterpolate(Mat, Vec, Vec); 911 PETSC_EXTERN PetscErrorCode MatInterpolateAdd(Mat, Vec, Vec, Vec); 912 PETSC_EXTERN PetscErrorCode MatRestrict(Mat, Vec, Vec); 913 PETSC_EXTERN PetscErrorCode MatMatInterpolate(Mat, Mat, Mat *); 914 PETSC_EXTERN PetscErrorCode MatMatInterpolateAdd(Mat, Mat, Mat, Mat *); 915 PETSC_EXTERN PetscErrorCode MatMatRestrict(Mat, Mat, Mat *); 916 PETSC_EXTERN PetscErrorCode MatCreateVecs(Mat, Vec *, Vec *); 917 PETSC_DEPRECATED_FUNCTION(3, 6, 0, "MatCreateVecs()", ) static inline PetscErrorCode MatGetVecs(Mat mat, Vec *x, Vec *y) 918 { 919 return MatCreateVecs(mat, x, y); 920 } 921 PETSC_EXTERN PetscErrorCode MatCreateRedundantMatrix(Mat, PetscInt, MPI_Comm, MatReuse, Mat *); 922 PETSC_EXTERN PetscErrorCode MatGetMultiProcBlock(Mat, MPI_Comm, MatReuse, Mat *); 923 PETSC_EXTERN PetscErrorCode MatFindZeroDiagonals(Mat, IS *); 924 PETSC_EXTERN PetscErrorCode MatFindOffBlockDiagonalEntries(Mat, IS *); 925 PETSC_EXTERN PetscErrorCode MatCreateMPIMatConcatenateSeqMat(MPI_Comm, Mat, PetscInt, MatReuse, Mat *); 926 927 /*@C 928 MatSetValue - Set a single entry into a matrix. 929 930 This value may be cached, so `MatAssemblyBegin()` and `MatAssemblyEnd()` 931 MUST be called after all calls to `MatSetValue()` have been completed. 932 933 Not Collective 934 935 Input Parameters: 936 + mat - the matrix 937 . i - the row location of the entry 938 . j - the column location of the entry 939 . va - the value to insert 940 - mode - either `INSERT_VALUES` or `ADD_VALUES` 941 942 Level: beginner 943 944 Note: 945 For efficiency one should use `MatSetValues()` and set several values simultaneously. 946 947 .seealso: [](ch_matrices), `Mat`, `MatAssemblyBegin()`, `MatAssemblyEnd`, `InsertMode`, `MatGetValue()`, `MatSetValues()`, 948 `MatSetValueLocal()`, `MatSetValuesLocal()` 949 @*/ 950 static inline PetscErrorCode MatSetValue(Mat mat, PetscInt i, PetscInt j, PetscScalar va, InsertMode mode) 951 { 952 return MatSetValues(mat, 1, &i, 1, &j, &va, mode); 953 } 954 955 /*@C 956 MatGetValue - Gets a single value from a matrix 957 958 Not Collective; can only return a value owned by the given process 959 960 Input Parameters: 961 + mat - the matrix 962 . row - the row location of the entry 963 - col - the column location of the entry 964 965 Output Parameter: 966 . va - the value 967 968 Level: advanced 969 970 Notes: 971 The matrix must have been assembled with `MatAssemblyBegin()` and `MatAssemblyEnd` before this call 972 973 For efficiency one should use `MatGetValues()` and get several values simultaneously. 974 975 See notes for `MatGetValues()`. 976 977 .seealso: [](ch_matrices), `Mat`, `MatAssemblyBegin()`, `MatAssemblyEnd`, `MatSetValue()`, `MatGetValueLocal()`, `MatGetValues()` 978 @*/ 979 static inline PetscErrorCode MatGetValue(Mat mat, PetscInt row, PetscInt col, PetscScalar *va) 980 { 981 return MatGetValues(mat, 1, &row, 1, &col, va); 982 } 983 984 /*@C 985 MatSetValueLocal - Inserts or adds a single value into a matrix, using a local numbering of the nodes. 986 987 Not Collective 988 989 Input Parameters: 990 + mat - the matrix 991 . i - the row location of the entry 992 . j - the column location of the entry 993 . va - the value to insert 994 - mode - either `INSERT_VALUES` or `ADD_VALUES` 995 996 Level: intermediate 997 998 Notes: 999 For efficiency one should use `MatSetValuesLocal()` and set several values simultaneously. 1000 1001 See notes for `MatSetValuesLocal()` for additional information on when and how this function can be used. 1002 1003 .seealso: [](ch_matrices), `MatSetValue()`, `MatSetValuesLocal()` 1004 @*/ 1005 static inline PetscErrorCode MatSetValueLocal(Mat mat, PetscInt i, PetscInt j, PetscScalar va, InsertMode mode) 1006 { 1007 return MatSetValuesLocal(mat, 1, &i, 1, &j, &va, mode); 1008 } 1009 1010 /*MC 1011 MatPreallocateBegin - Begins the block of code that will count the number of nonzeros per 1012 row in a matrix providing the data that one can use to correctly preallocate the matrix. 1013 1014 Synopsis: 1015 #include <petscmat.h> 1016 PetscErrorCode MatPreallocateBegin(MPI_Comm comm, PetscInt nrows, PetscInt ncols, PetscInt *dnz, PetscInt *onz) 1017 1018 Collective 1019 1020 Input Parameters: 1021 + comm - the communicator that will share the eventually allocated matrix 1022 . nrows - the number of LOCAL rows in the matrix 1023 - ncols - the number of LOCAL columns in the matrix 1024 1025 Output Parameters: 1026 + dnz - the array that will be passed to the matrix preallocation routines 1027 - onz - the other array passed to the matrix preallocation routines 1028 1029 Level: deprecated (since v3.19) 1030 1031 Notes: 1032 This routine is no longer needed since assembling matrices without explicit preallocation will not be slower than 1033 the use of this routine 1034 1035 This is a macro that handles its own error checking, it does not return an error code. 1036 1037 Do not malloc or free `dnz` and `onz`, that is handled internally by these routines 1038 1039 Developer Note: 1040 This is a MACRO not a function because it has a leading { that is closed by `PetscPreallocateFinalize()`. 1041 1042 .seealso: [](ch_matrices), `MatPreallocateEnd()`, `MatPreallocateSet()`, `MatPreallocateSymmetricSetBlock()`, `MatPreallocateSetLocal()`, 1043 `MatPreallocateSymmetricSetLocalBlock()` 1044 M*/ 1045 #define MatPreallocateBegin(comm, nrows, ncols, dnz, onz) \ 1046 do { \ 1047 PetscInt __nrows = (nrows), __ncols = (ncols), __rstart, __end = 0; \ 1048 PetscInt PETSC_UNUSED __start; \ 1049 PetscCall(PetscCalloc2(__nrows, &(dnz), __nrows, &(onz))); \ 1050 PetscCallMPI(MPI_Scan(&__ncols, &__end, 1, MPIU_INT, MPI_SUM, comm)); \ 1051 __start = __end - __ncols; \ 1052 (void)__start; \ 1053 PetscCallMPI(MPI_Scan(&__nrows, &__rstart, 1, MPIU_INT, MPI_SUM, comm)); \ 1054 __rstart -= __nrows 1055 1056 #define MatPreallocateInitialize(...) PETSC_DEPRECATED_MACRO(3, 18, 0, "MatPreallocateBegin()", ) MatPreallocateBegin(__VA_ARGS__) 1057 1058 /*MC 1059 MatPreallocateSetLocal - Indicates the locations (rows and columns) in the matrix where nonzeros will be 1060 inserted using a local number of the rows and columns 1061 1062 Synopsis: 1063 #include <petscmat.h> 1064 PetscErrorCode MatPreallocateSetLocal(ISLocalToGlobalMappping map,PetscInt nrows, PetscInt *rows,PetscInt ncols, PetscInt *cols,PetscInt *dnz, PetscInt *onz) 1065 1066 Not Collective 1067 1068 Input Parameters: 1069 + map - the row mapping from local numbering to global numbering 1070 . nrows - the number of rows indicated 1071 . rows - the indices of the rows 1072 . cmap - the column mapping from local to global numbering 1073 . ncols - the number of columns in the matrix 1074 . cols - the columns indicated 1075 . dnz - the array that will be passed to the matrix preallocation routines 1076 - onz - the other array passed to the matrix preallocation routines 1077 1078 Level: deprecated (since v3.19) 1079 1080 Notes: 1081 This routine is no longer needed since assembling matrices without explicit preallocation will not be slower than 1082 the use of this routine 1083 1084 Do not malloc or free `dnz` and `onz`, that is handled internally by these routines 1085 1086 .seealso: [](ch_matrices), `MatPreallocateEnd()`, `MatPreallocateSet()`, `MatPreallocateSymmetricSetBlock()` 1087 `MatPreallocateBegin()`, `MatPreallocateSymmetricSetLocalBlock()`, `MatPreallocateSetLocalRemoveDups()` 1088 M*/ 1089 #define MatPreallocateSetLocal(rmap, nrows, rows, cmap, ncols, cols, dnz, onz) \ 1090 PetscMacroReturnStandard(PetscCall(ISLocalToGlobalMappingApply(rmap, nrows, rows, rows)); PetscCall(ISLocalToGlobalMappingApply(cmap, ncols, cols, cols)); for (PetscInt __l = 0; __l < nrows; __l++) PetscCall(MatPreallocateSet((rows)[__l], ncols, cols, dnz, onz));) 1091 1092 /*MC 1093 MatPreallocateSetLocalRemoveDups - Indicates the locations (rows and columns) in the matrix where nonzeros will be 1094 inserted using a local number of the rows and columns. This version removes any duplicate columns in cols 1095 1096 Synopsis: 1097 #include <petscmat.h> 1098 PetscErrorCode MatPreallocateSetLocalRemoveDups(ISLocalToGlobalMappping map,PetscInt nrows, PetscInt *rows,PetscInt ncols, PetscInt *cols,PetscInt *dnz, PetscInt *onz) 1099 1100 Not Collective 1101 1102 Input Parameters: 1103 + map - the row mapping from local numbering to global numbering 1104 . nrows - the number of rows indicated 1105 . rows - the indices of the rows (these values are mapped to the global values) 1106 . cmap - the column mapping from local to global numbering 1107 . ncols - the number of columns in the matrix (this value will be changed if duplicate columns are found) 1108 . cols - the columns indicated (these values are mapped to the global values, they are then sorted and duplicates removed) 1109 . dnz - the array that will be passed to the matrix preallocation routines 1110 - onz - the other array passed to the matrix preallocation routines 1111 1112 Level: deprecated (since v3.19) 1113 1114 Notes: 1115 This routine is no longer needed since assembling matrices without explicit preallocation will not be slower than 1116 the use of this routine 1117 1118 Do not malloc or free `dnz` and `onz`, that is handled internally by these routines 1119 1120 .seealso: [](ch_matrices), `MatPreallocateEnd()`, `MatPreallocateSet()`, `MatPreallocateSymmetricSetBlock()` 1121 `MatPreallocateBegin()`, `MatPreallocateSymmetricSetLocalBlock()`, `MatPreallocateSetLocal()` 1122 M*/ 1123 #define MatPreallocateSetLocalRemoveDups(rmap, nrows, rows, cmap, ncols, cols, dnz, onz) \ 1124 PetscMacroReturnStandard(PetscCall(ISLocalToGlobalMappingApply(rmap, nrows, rows, rows)); PetscCall(ISLocalToGlobalMappingApply(cmap, ncols, cols, cols)); PetscCall(PetscSortRemoveDupsInt(&ncols, cols)); for (PetscInt __l = 0; __l < nrows; __l++) PetscCall(MatPreallocateSet((rows)[__l], ncols, cols, dnz, onz));) 1125 1126 /*MC 1127 MatPreallocateSetLocalBlock - Indicates the locations (rows and columns) in the matrix where nonzeros will be 1128 inserted using a local number of the rows and columns 1129 1130 Synopsis: 1131 #include <petscmat.h> 1132 PetscErrorCode MatPreallocateSetLocalBlock(ISLocalToGlobalMappping map,PetscInt nrows, PetscInt *rows,PetscInt ncols, PetscInt *cols,PetscInt *dnz, PetscInt *onz) 1133 1134 Not Collective 1135 1136 Input Parameters: 1137 + map - the row mapping from local numbering to global numbering 1138 . nrows - the number of rows indicated 1139 . rows - the indices of the rows 1140 . cmap - the column mapping from local to global numbering 1141 . ncols - the number of columns in the matrix 1142 . cols - the columns indicated 1143 . dnz - the array that will be passed to the matrix preallocation routines 1144 - onz - the other array passed to the matrix preallocation routines 1145 1146 Level: deprecated (since v3.19) 1147 1148 Notes: 1149 This routine is no longer needed since assembling matrices without explicit preallocation will not be slower than 1150 the use of this routine 1151 1152 Do not malloc or free `dnz` and `onz`, that is handled internally by these routines 1153 1154 .seealso: [](ch_matrices), `MatPreallocateEnd()`, `MatPreallocateSet()`, `MatPreallocateSymmetricSetBlock()` 1155 `MatPreallocateBegin()`, `MatPreallocateSymmetricSetLocalBlock()` 1156 M*/ 1157 #define MatPreallocateSetLocalBlock(rmap, nrows, rows, cmap, ncols, cols, dnz, onz) \ 1158 PetscMacroReturnStandard(PetscCall(ISLocalToGlobalMappingApplyBlock(rmap, nrows, rows, rows)); PetscCall(ISLocalToGlobalMappingApplyBlock(cmap, ncols, cols, cols)); for (PetscInt __l = 0; __l < nrows; __l++) PetscCall(MatPreallocateSet((rows)[__l], ncols, cols, dnz, onz));) 1159 1160 /*MC 1161 MatPreallocateSymmetricSetLocalBlock - Indicates the locations (rows and columns) in the matrix where nonzeros will be 1162 inserted using a local number of the rows and columns 1163 1164 Synopsis: 1165 #include <petscmat.h> 1166 PetscErrorCode MatPreallocateSymmetricSetLocalBlock(ISLocalToGlobalMappping map,PetscInt nrows, PetscInt *rows,PetscInt ncols, PetscInt *cols,PetscInt *dnz, PetscInt *onz) 1167 1168 Not Collective 1169 1170 Input Parameters: 1171 + map - the mapping between local numbering and global numbering 1172 . nrows - the number of rows indicated 1173 . rows - the indices of the rows 1174 . ncols - the number of columns in the matrix 1175 . cols - the columns indicated 1176 . dnz - the array that will be passed to the matrix preallocation routines 1177 - onz - the other array passed to the matrix preallocation routines 1178 1179 Level: deprecated (since v3.19) 1180 1181 Notes: 1182 This routine is no longer needed since assembling matrices without explicit preallocation will not be slower than 1183 the use of this routine 1184 1185 Do not malloc or free `dnz` and `onz` that is handled internally by these routines 1186 1187 .seealso: [](ch_matrices), `MatPreallocateEnd()`, `MatPreallocateSet()` 1188 `MatPreallocateBegin()`, `MatPreallocateSetLocal()` 1189 M*/ 1190 #define MatPreallocateSymmetricSetLocalBlock(map, nrows, rows, ncols, cols, dnz, onz) \ 1191 PetscMacroReturnStandard(PetscCall(ISLocalToGlobalMappingApplyBlock(map, nrows, rows, rows)); PetscCall(ISLocalToGlobalMappingApplyBlock(map, ncols, cols, cols)); for (PetscInt __l = 0; __l < nrows; __l++) PetscCall(MatPreallocateSymmetricSetBlock((rows)[__l], ncols, cols, dnz, onz));) 1192 1193 /*MC 1194 MatPreallocateSet - Indicates the locations (rows and columns) in the matrix where nonzeros will be 1195 inserted using a local number of the rows and columns 1196 1197 Synopsis: 1198 #include <petscmat.h> 1199 PetscErrorCode MatPreallocateSet(PetscInt nrows, PetscInt *rows,PetscInt ncols, PetscInt *cols,PetscInt *dnz, PetscInt *onz) 1200 1201 Not Collective 1202 1203 Input Parameters: 1204 + row - the row 1205 . ncols - the number of columns in the matrix 1206 - cols - the columns indicated 1207 1208 Output Parameters: 1209 + dnz - the array that will be passed to the matrix preallocation routines 1210 - onz - the other array passed to the matrix preallocation routines 1211 1212 Level: deprecated (since v3.19) 1213 1214 Notes: 1215 This routine is no longer needed since assembling matrices without explicit preallocation will not be slower than 1216 the use of this routine 1217 1218 Do not malloc or free `dnz` and `onz` that is handled internally by these routines 1219 1220 This is a MACRO not a function because it uses variables declared in MatPreallocateBegin(). 1221 1222 .seealso: [](ch_matrices), `MatPreallocateEnd()`, `MatPreallocateSet()`, `MatPreallocateSymmetricSetBlock()` 1223 `MatPreallocateBegin()`, `MatPreallocateSetLocal()` 1224 M*/ 1225 #define MatPreallocateSet(row, nc, cols, dnz, onz) \ 1226 PetscMacroReturnStandard(PetscCheck(row >= __rstart, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Trying to set preallocation for row %" PetscInt_FMT " less than first local row %" PetscInt_FMT, row, __rstart); PetscCheck(row < __rstart + __nrows, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Trying to set preallocation for row %" PetscInt_FMT " greater than last local row %" PetscInt_FMT, row, __rstart + __nrows - 1); for (PetscInt __i = 0; __i < nc; ++__i) { \ 1227 if ((cols)[__i] < __start || (cols)[__i] >= __end) onz[row - __rstart]++; \ 1228 else if (dnz[row - __rstart] < __ncols) dnz[row - __rstart]++; \ 1229 }) 1230 1231 /*MC 1232 MatPreallocateSymmetricSetBlock - Indicates the locations (rows and columns) in the matrix where nonzeros will be 1233 inserted using a local number of the rows and columns 1234 1235 Synopsis: 1236 #include <petscmat.h> 1237 PetscErrorCode MatPreallocateSymmetricSetBlock(PetscInt nrows, PetscInt *rows,PetscInt ncols, PetscInt *cols,PetscInt *dnz, PetscInt *onz) 1238 1239 Not Collective 1240 1241 Input Parameters: 1242 + nrows - the number of rows indicated 1243 . rows - the indices of the rows 1244 . ncols - the number of columns in the matrix 1245 . cols - the columns indicated 1246 . dnz - the array that will be passed to the matrix preallocation routines 1247 - onz - the other array passed to the matrix preallocation routines 1248 1249 Level: deprecated (since v3.19) 1250 1251 Notes: 1252 This routine is no longer needed since assembling matrices without explicit preallocation will not be slower than 1253 the use of this routine 1254 1255 Do not malloc or free `dnz` and `onz` that is handled internally by these routines 1256 1257 This is a MACRO not a function because it uses variables declared in MatPreallocateBegin(). 1258 1259 .seealso: [](ch_matrices), `MatPreallocateEnd()`, `MatPreallocateSet()`, `MatPreallocateBegin()`, 1260 `MatPreallocateSymmetricSetLocalBlock()`, `MatPreallocateSetLocal()` 1261 M*/ 1262 #define MatPreallocateSymmetricSetBlock(row, nc, cols, dnz, onz) \ 1263 PetscMacroReturnStandard(for (PetscInt __i = 0; __i < nc; __i++) { \ 1264 if (cols[__i] >= __end) onz[row - __rstart]++; \ 1265 else if (cols[__i] >= row && dnz[row - __rstart] < __ncols) dnz[row - __rstart]++; \ 1266 }) 1267 1268 /*MC 1269 MatPreallocateLocation - An alternative to MatPreallocateSet() that puts the nonzero locations into the matrix if it exists 1270 1271 Synopsis: 1272 #include <petscmat.h> 1273 PetscErrorCode MatPreallocateLocations(Mat A,PetscInt row,PetscInt ncols,PetscInt *cols,PetscInt *dnz,PetscInt *onz) 1274 1275 Not Collective 1276 1277 Input Parameters: 1278 + A - matrix 1279 . row - row where values exist (must be local to this process) 1280 . ncols - number of columns 1281 . cols - columns with nonzeros 1282 . dnz - the array that will be passed to the matrix preallocation routines 1283 - onz - the other array passed to the matrix preallocation routines 1284 1285 Level: deprecated (since v3.19) 1286 1287 Notes: 1288 This routine is no longer needed since assembling matrices without explicit preallocation will not be slower than 1289 the use of this routine 1290 1291 Do not malloc or free `dnz` and `onz` that is handled internally by these routines 1292 1293 This is a MACRO not a function because it uses a bunch of variables private to the MatPreallocation.... routines. 1294 1295 .seealso: [](ch_matrices), `MatPreallocateBegin()`, `MatPreallocateSet()`, `MatPreallocateSymmetricSetBlock()`, `MatPreallocateSetLocal()`, 1296 `MatPreallocateSymmetricSetLocalBlock()` 1297 M*/ 1298 #define MatPreallocateLocation(A, row, ncols, cols, dnz, onz) (A ? MatSetValues(A, 1, &row, ncols, cols, NULL, INSERT_VALUES) : MatPreallocateSet(row, ncols, cols, dnz, onz)) 1299 1300 /*MC 1301 MatPreallocateEnd - Ends the block of code that will count the number of nonzeros per 1302 row in a matrix providing the data that one can use to correctly preallocate the matrix. 1303 1304 Synopsis: 1305 #include <petscmat.h> 1306 PetscErrorCode MatPreallocateEnd(PetscInt *dnz, PetscInt *onz) 1307 1308 Collective 1309 1310 Input Parameters: 1311 + dnz - the array that was be passed to the matrix preallocation routines 1312 - onz - the other array passed to the matrix preallocation routines 1313 1314 Level: deprecated (since v3.19) 1315 1316 Notes: 1317 This routine is no longer needed since assembling matrices without explicit preallocation will not be slower than 1318 the use of this routine 1319 1320 Do not malloc or free `dnz` and `onz`, that is handled internally by these routines 1321 1322 Developer Note: 1323 This is a MACRO not a function because it closes the { started in MatPreallocateBegin(). 1324 1325 .seealso: [](ch_matrices), `MatPreallocateBegin()`, `MatPreallocateSet()`, `MatPreallocateSymmetricSetBlock()`, `MatPreallocateSetLocal()`, 1326 `MatPreallocateSymmetricSetLocalBlock()` 1327 M*/ 1328 #define MatPreallocateEnd(dnz, onz) \ 1329 PetscCall(PetscFree2(dnz, onz)); \ 1330 } \ 1331 while (0) 1332 1333 #define MatPreallocateFinalize(...) PETSC_DEPRECATED_MACRO(3, 18, 0, "MatPreallocateEnd()", ) MatPreallocateEnd(__VA_ARGS__) 1334 1335 /* Routines unique to particular data structures */ 1336 PETSC_EXTERN PetscErrorCode MatShellGetContext(Mat, void *); 1337 1338 PETSC_EXTERN PetscErrorCode MatInodeAdjustForInodes(Mat, IS *, IS *); 1339 PETSC_EXTERN PetscErrorCode MatInodeGetInodeSizes(Mat, PetscInt *, PetscInt *[], PetscInt *); 1340 1341 PETSC_EXTERN PetscErrorCode MatSeqAIJSetColumnIndices(Mat, PetscInt[]); 1342 PETSC_EXTERN PetscErrorCode MatSeqBAIJSetColumnIndices(Mat, PetscInt[]); 1343 PETSC_EXTERN PetscErrorCode MatCreateSeqAIJWithArrays(MPI_Comm, PetscInt, PetscInt, PetscInt[], PetscInt[], PetscScalar[], Mat *); 1344 PETSC_EXTERN PetscErrorCode MatCreateSeqBAIJWithArrays(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt[], PetscInt[], PetscScalar[], Mat *); 1345 PETSC_EXTERN PetscErrorCode MatCreateSeqSBAIJWithArrays(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt[], PetscInt[], PetscScalar[], Mat *); 1346 PETSC_EXTERN PetscErrorCode MatCreateSeqAIJFromTriple(MPI_Comm, PetscInt, PetscInt, PetscInt[], PetscInt[], PetscScalar[], Mat *, PetscInt, PetscBool); 1347 1348 #define MAT_SKIP_ALLOCATION -4 1349 1350 PETSC_EXTERN PetscErrorCode MatSeqBAIJSetPreallocation(Mat, PetscInt, PetscInt, const PetscInt[]); 1351 PETSC_EXTERN PetscErrorCode MatSeqSBAIJSetPreallocation(Mat, PetscInt, PetscInt, const PetscInt[]); 1352 PETSC_EXTERN PetscErrorCode MatSeqAIJSetPreallocation(Mat, PetscInt, const PetscInt[]); 1353 PETSC_EXTERN PetscErrorCode MatSeqAIJSetTotalPreallocation(Mat, PetscInt); 1354 1355 PETSC_EXTERN PetscErrorCode MatMPIBAIJSetPreallocation(Mat, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[]); 1356 PETSC_EXTERN PetscErrorCode MatMPISBAIJSetPreallocation(Mat, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[]); 1357 PETSC_EXTERN PetscErrorCode MatMPIAIJSetPreallocation(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[]); 1358 PETSC_EXTERN PetscErrorCode MatSeqAIJSetPreallocationCSR(Mat, const PetscInt[], const PetscInt[], const PetscScalar[]); 1359 PETSC_EXTERN PetscErrorCode MatSeqBAIJSetPreallocationCSR(Mat, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[]); 1360 PETSC_EXTERN PetscErrorCode MatMPIAIJSetPreallocationCSR(Mat, const PetscInt[], const PetscInt[], const PetscScalar[]); 1361 PETSC_EXTERN PetscErrorCode MatMPIBAIJSetPreallocationCSR(Mat, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[]); 1362 PETSC_EXTERN PetscErrorCode MatMPIAdjSetPreallocation(Mat, PetscInt[], PetscInt[], PetscInt[]); 1363 PETSC_EXTERN PetscErrorCode MatMPIAdjToSeq(Mat, Mat *); 1364 PETSC_EXTERN PetscErrorCode MatMPIAdjToSeqRankZero(Mat, Mat *); 1365 PETSC_EXTERN PetscErrorCode MatMPIDenseSetPreallocation(Mat, PetscScalar[]); 1366 PETSC_EXTERN PetscErrorCode MatSeqDenseSetPreallocation(Mat, PetscScalar[]); 1367 PETSC_EXTERN PetscErrorCode MatMPIAIJGetSeqAIJ(Mat, Mat *, Mat *, const PetscInt *[]); 1368 PETSC_EXTERN PetscErrorCode MatMPIBAIJGetSeqBAIJ(Mat, Mat *, Mat *, const PetscInt *[]); 1369 PETSC_EXTERN PetscErrorCode MatMPIAdjCreateNonemptySubcommMat(Mat, Mat *); 1370 1371 PETSC_EXTERN PetscErrorCode MatDenseGetLDA(Mat, PetscInt *); 1372 PETSC_EXTERN PetscErrorCode MatDenseSetLDA(Mat, PetscInt); 1373 PETSC_DEPRECATED_FUNCTION(3, 14, 0, "MatDenseSetLDA()", ) static inline PetscErrorCode MatSeqDenseSetLDA(Mat A, PetscInt lda) 1374 { 1375 return MatDenseSetLDA(A, lda); 1376 } 1377 PETSC_EXTERN PetscErrorCode MatDenseGetLocalMatrix(Mat, Mat *); 1378 1379 PETSC_EXTERN PetscErrorCode MatBlockMatSetPreallocation(Mat, PetscInt, PetscInt, const PetscInt[]); 1380 1381 PETSC_EXTERN PetscErrorCode MatStoreValues(Mat); 1382 PETSC_EXTERN PetscErrorCode MatRetrieveValues(Mat); 1383 1384 PETSC_EXTERN PetscErrorCode MatFindNonzeroRows(Mat, IS *); 1385 PETSC_EXTERN PetscErrorCode MatFindZeroRows(Mat, IS *); 1386 /* 1387 These routines are not usually accessed directly, rather solving is 1388 done through the KSP and PC interfaces. 1389 */ 1390 1391 /*J 1392 MatOrderingType - String with the name of a PETSc matrix ordering. These orderings are most commonly used 1393 to reduce fill in sparse factorizations. 1394 1395 Level: beginner 1396 1397 Notes: 1398 If `MATORDERINGEXTERNAL` is used then PETSc does not compute an ordering and instead the external factorization solver package called utilizes one 1399 of its own. 1400 1401 There is no `MatOrdering` object, the ordering is obtained directly from the matrix with `MatGetOrdering()` 1402 1403 Developer Note: 1404 This API should be converted to an API similar to those for `MatColoring` and `MatPartitioning` 1405 1406 .seealso: [](ch_matrices), [](sec_graph), `MatGetFactor()`, `MatGetOrdering()`, `MatColoringType`, `MatPartitioningType`, `MatCoarsenType`, `MatCoarsenType`, 1407 `PCFactorSetOrderingType()` 1408 J*/ 1409 typedef const char *MatOrderingType; 1410 #define MATORDERINGNATURAL "natural" 1411 #define MATORDERINGND "nd" 1412 #define MATORDERING1WD "1wd" 1413 #define MATORDERINGRCM "rcm" 1414 #define MATORDERINGQMD "qmd" 1415 #define MATORDERINGROWLENGTH "rowlength" 1416 #define MATORDERINGWBM "wbm" 1417 #define MATORDERINGSPECTRAL "spectral" 1418 #define MATORDERINGAMD "amd" /* only works if UMFPACK is installed with PETSc */ 1419 #define MATORDERINGMETISND "metisnd" /* only works if METIS is installed with PETSc */ 1420 #define MATORDERINGNATURAL_OR_ND "natural_or_nd" /* special coase used for Cholesky and ICC, allows ND when AIJ matrix is used but Natural when SBAIJ is used */ 1421 #define MATORDERINGEXTERNAL "external" /* uses an ordering type internal to the factorization package */ 1422 1423 PETSC_EXTERN PetscErrorCode MatGetOrdering(Mat, MatOrderingType, IS *, IS *); 1424 PETSC_EXTERN PetscErrorCode MatGetOrderingList(PetscFunctionList *); 1425 PETSC_EXTERN PetscErrorCode MatOrderingRegister(const char[], PetscErrorCode (*)(Mat, MatOrderingType, IS *, IS *)); 1426 PETSC_EXTERN PetscFunctionList MatOrderingList; 1427 1428 #include "petscmatcoarsen.h" 1429 1430 PETSC_EXTERN PetscErrorCode MatReorderForNonzeroDiagonal(Mat, PetscReal, IS, IS); 1431 PETSC_EXTERN PetscErrorCode MatCreateLaplacian(Mat, PetscReal, PetscBool, Mat *); 1432 1433 PETSC_EXTERN PetscErrorCode MatFactorGetPreferredOrdering(Mat, MatFactorType, MatOrderingType *); 1434 1435 /*S 1436 MatFactorShiftType - Type of numeric shift used for factorizations 1437 1438 Values: 1439 + `MAT_SHIFT_NONE` - do not shift the matrix diagonal entries 1440 . `MAT_SHIFT_NONZERO` - shift the entries to be non-zero 1441 . `MAT_SHIFT_POSITIVE_DEFINITE` - shift the entries to force the factorization to be positive definite 1442 - `MAT_SHIFT_INBLOCKS` - only shift the factors inside the small dense diagonal blocks of the matrix, for example with `MATBAIJ` 1443 1444 Level: intermediate 1445 1446 .seealso: [](ch_matrices), `Mat`, `MatGetFactor()`, `PCFactorSetShiftType()` 1447 S*/ 1448 typedef enum { 1449 MAT_SHIFT_NONE, 1450 MAT_SHIFT_NONZERO, 1451 MAT_SHIFT_POSITIVE_DEFINITE, 1452 MAT_SHIFT_INBLOCKS 1453 } MatFactorShiftType; 1454 PETSC_EXTERN const char *const MatFactorShiftTypes[]; 1455 PETSC_EXTERN const char *const MatFactorShiftTypesDetail[]; 1456 1457 /*S 1458 MatFactorError - indicates what type of error was generated in a matrix factorization 1459 1460 Values: 1461 + `MAT_FACTOR_NOERROR` - there was no error during the factorization 1462 . `MAT_FACTOR_STRUCT_ZEROPIVOT` - there was a missing entry in a diagonal location of the matrix 1463 . `MAT_FACTOR_NUMERIC_ZEROPIVOT` - there was a (near) zero pivot during the factorization 1464 . `MAT_FACTOR_OUTMEMORY` - the factorization has run out of memory 1465 - `MAT_FACTOR_OTHER` - some other error has occurred. 1466 1467 Level: intermediate 1468 1469 Note: 1470 When a factorization is done in a preconditioner `PC` the error may be propagated up to a `PCFailedReason` or a `KSPConvergedReason` 1471 1472 .seealso: [](ch_matrices), `Mat`, `MatGetFactor()`, `MatFactorGetError()`, `MatFactorGetErrorZeroPivot()`, `MatFactorClearError()`, 1473 `PCFailedReason`, `PCGetFailedReason()`, `KSPConvergedReason` 1474 S*/ 1475 typedef enum { 1476 MAT_FACTOR_NOERROR, 1477 MAT_FACTOR_STRUCT_ZEROPIVOT, 1478 MAT_FACTOR_NUMERIC_ZEROPIVOT, 1479 MAT_FACTOR_OUTMEMORY, 1480 MAT_FACTOR_OTHER 1481 } MatFactorError; 1482 1483 PETSC_EXTERN PetscErrorCode MatFactorGetError(Mat, MatFactorError *); 1484 PETSC_EXTERN PetscErrorCode MatFactorClearError(Mat); 1485 PETSC_EXTERN PetscErrorCode MatFactorGetErrorZeroPivot(Mat, PetscReal *, PetscInt *); 1486 1487 /*S 1488 MatFactorInfo - Data passed into the matrix factorization routines, and information about the resulting factorization 1489 1490 Level: developer 1491 1492 Note: 1493 You can use `MatFactorInfoInitialize()` to set default values. 1494 1495 Fortran Note: 1496 The data is available in a double precision arrays of size `MAT_FACTORINFO_SIZE` 1497 1498 .seealso: [](ch_matrices), `Mat`, `MatInfo`, `MatGetFactor()`, `MatLUFactorSymbolic()`, `MatILUFactorSymbolic()`, `MatCholeskyFactorSymbolic()`, 1499 `MatICCFactorSymbolic()`, `MatICCFactor()`, `MatFactorInfoInitialize()` 1500 S*/ 1501 typedef struct { 1502 PetscReal diagonal_fill; /* force diagonal to fill in if initially not filled */ 1503 PetscReal usedt; 1504 PetscReal dt; /* drop tolerance */ 1505 PetscReal dtcol; /* tolerance for pivoting */ 1506 PetscReal dtcount; /* maximum nonzeros to be allowed per row */ 1507 PetscReal fill; /* expected fill, nonzeros in factored matrix/nonzeros in original matrix */ 1508 PetscReal levels; /* ICC/ILU(levels) */ 1509 PetscReal pivotinblocks; /* for BAIJ and SBAIJ matrices pivot in factorization on blocks, default 1.0 1510 factorization may be faster if do not pivot */ 1511 PetscReal zeropivot; /* pivot is called zero if less than this */ 1512 PetscReal shifttype; /* type of shift added to matrix factor to prevent zero pivots */ 1513 PetscReal shiftamount; /* how large the shift is */ 1514 } MatFactorInfo; 1515 1516 PETSC_EXTERN PetscErrorCode MatFactorInfoInitialize(MatFactorInfo *); 1517 PETSC_EXTERN PetscErrorCode MatCholeskyFactor(Mat, IS, const MatFactorInfo *); 1518 PETSC_EXTERN PetscErrorCode MatCholeskyFactorSymbolic(Mat, Mat, IS, const MatFactorInfo *); 1519 PETSC_EXTERN PetscErrorCode MatCholeskyFactorNumeric(Mat, Mat, const MatFactorInfo *); 1520 PETSC_EXTERN PetscErrorCode MatLUFactor(Mat, IS, IS, const MatFactorInfo *); 1521 PETSC_EXTERN PetscErrorCode MatILUFactor(Mat, IS, IS, const MatFactorInfo *); 1522 PETSC_EXTERN PetscErrorCode MatLUFactorSymbolic(Mat, Mat, IS, IS, const MatFactorInfo *); 1523 PETSC_EXTERN PetscErrorCode MatILUFactorSymbolic(Mat, Mat, IS, IS, const MatFactorInfo *); 1524 PETSC_EXTERN PetscErrorCode MatICCFactorSymbolic(Mat, Mat, IS, const MatFactorInfo *); 1525 PETSC_EXTERN PetscErrorCode MatICCFactor(Mat, IS, const MatFactorInfo *); 1526 PETSC_EXTERN PetscErrorCode MatLUFactorNumeric(Mat, Mat, const MatFactorInfo *); 1527 PETSC_EXTERN PetscErrorCode MatQRFactor(Mat, IS, const MatFactorInfo *); 1528 PETSC_EXTERN PetscErrorCode MatQRFactorSymbolic(Mat, Mat, IS, const MatFactorInfo *); 1529 PETSC_EXTERN PetscErrorCode MatQRFactorNumeric(Mat, Mat, const MatFactorInfo *); 1530 PETSC_EXTERN PetscErrorCode MatGetInertia(Mat, PetscInt *, PetscInt *, PetscInt *); 1531 PETSC_EXTERN PetscErrorCode MatSolve(Mat, Vec, Vec); 1532 PETSC_EXTERN PetscErrorCode MatForwardSolve(Mat, Vec, Vec); 1533 PETSC_EXTERN PetscErrorCode MatBackwardSolve(Mat, Vec, Vec); 1534 PETSC_EXTERN PetscErrorCode MatSolveAdd(Mat, Vec, Vec, Vec); 1535 PETSC_EXTERN PetscErrorCode MatSolveTranspose(Mat, Vec, Vec); 1536 PETSC_EXTERN PetscErrorCode MatSolveTransposeAdd(Mat, Vec, Vec, Vec); 1537 PETSC_EXTERN PetscErrorCode MatSolves(Mat, Vecs, Vecs); 1538 PETSC_EXTERN PetscErrorCode MatSetUnfactored(Mat); 1539 1540 typedef enum { 1541 MAT_FACTOR_SCHUR_UNFACTORED, 1542 MAT_FACTOR_SCHUR_FACTORED, 1543 MAT_FACTOR_SCHUR_INVERTED 1544 } MatFactorSchurStatus; 1545 PETSC_EXTERN PetscErrorCode MatFactorSetSchurIS(Mat, IS); 1546 PETSC_EXTERN PetscErrorCode MatFactorGetSchurComplement(Mat, Mat *, MatFactorSchurStatus *); 1547 PETSC_EXTERN PetscErrorCode MatFactorRestoreSchurComplement(Mat, Mat *, MatFactorSchurStatus); 1548 PETSC_EXTERN PetscErrorCode MatFactorInvertSchurComplement(Mat); 1549 PETSC_EXTERN PetscErrorCode MatFactorCreateSchurComplement(Mat, Mat *, MatFactorSchurStatus *); 1550 PETSC_EXTERN PetscErrorCode MatFactorSolveSchurComplement(Mat, Vec, Vec); 1551 PETSC_EXTERN PetscErrorCode MatFactorSolveSchurComplementTranspose(Mat, Vec, Vec); 1552 PETSC_EXTERN PetscErrorCode MatFactorFactorizeSchurComplement(Mat); 1553 1554 PETSC_EXTERN PetscErrorCode MatSeqDenseInvert(Mat); 1555 /*E 1556 MatSORType - What type of (S)SOR to perform 1557 1558 Values: 1559 + `SOR_FORWARD_SWEEP` - do a sweep from the first row of the matrix to the last 1560 . `SOR_BACKWARD_SWEEP` - do a sweep from the last row to the first 1561 . `SOR_SYMMETRIC_SWEEP` - do a sweep from the first row to the last and then back to the first 1562 . `SOR_LOCAL_FORWARD_SWEEP` - each MPI rank does its own forward sweep with no communication 1563 . `SOR_LOCAL_BACKWARD_SWEEP` - each MPI rank does its own backward sweep with no communication 1564 . `SOR_LOCAL_SYMMETRIC_SWEEP` - each MPI rank does its own symmetric sweep with no communication 1565 . `SOR_ZERO_INITIAL_GUESS` - indicates the initial solution is zero so the sweep can avoid unneeded computation 1566 . `SOR_EISENSTAT` - apply the Eisentat application of SOR, see `PCEISENSTAT` 1567 . `SOR_APPLY_UPPER` - multiply by the upper triangular portion of the matrix 1568 - `SOR_APPLY_LOWER` - multiply by the lower triangular portion of the matrix 1569 1570 Level: beginner 1571 1572 Note: 1573 These may be bitwise ORd together 1574 1575 Developer Note: 1576 Since `MatSORType` may be bitwise ORd together, so do not change the numerical values below 1577 1578 .seealso: [](ch_matrices), `MatSOR()` 1579 E*/ 1580 typedef enum { 1581 SOR_FORWARD_SWEEP = 1, 1582 SOR_BACKWARD_SWEEP = 2, 1583 SOR_SYMMETRIC_SWEEP = 3, 1584 SOR_LOCAL_FORWARD_SWEEP = 4, 1585 SOR_LOCAL_BACKWARD_SWEEP = 8, 1586 SOR_LOCAL_SYMMETRIC_SWEEP = 12, 1587 SOR_ZERO_INITIAL_GUESS = 16, 1588 SOR_EISENSTAT = 32, 1589 SOR_APPLY_UPPER = 64, 1590 SOR_APPLY_LOWER = 128 1591 } MatSORType; 1592 PETSC_EXTERN PetscErrorCode MatSOR(Mat, Vec, PetscReal, MatSORType, PetscReal, PetscInt, PetscInt, Vec); 1593 1594 /*S 1595 MatColoring - Object for managing the coloring of matrices. 1596 1597 Level: beginner 1598 1599 Notes: 1600 Coloring of matrices can be computed directly from the sparse matrix nonzero structure via the `MatColoring` object or from the mesh from which the 1601 matrix comes from via `DMCreateColoring()`. In general using the mesh produces a more optimal coloring (fewer colors). 1602 1603 Once a coloring is available `MatFDColoringCreate()` creates an object that can be used to efficiently compute Jacobians using that coloring. This 1604 same object can also be used to efficiently convert data created by Automatic Differentiation tools to PETSc sparse matrices. 1605 1606 .seealso: [](ch_matrices), [](sec_graph), `MatFDColoringCreate()`, `MatColoringWeightType`, `ISColoring`, `MatFDColoring`, `DMCreateColoring()`, `MatColoringCreate()`, 1607 `MatPartitioning`, `MatColoringType`, `MatPartitioningType`, `MatOrderingType`, `MatColoringSetWeightType()`, 1608 `MatColoringSetWeights()`, `MatCoarsenType`, `MatCoarsen` 1609 S*/ 1610 typedef struct _p_MatColoring *MatColoring; 1611 1612 /*J 1613 MatColoringType - String with the name of a PETSc matrix coloring 1614 1615 Level: beginner 1616 1617 .seealso: [](ch_matrices), [](sec_graph), `Mat`, `MatFDColoringCreate()`, `MatColoringSetType()`, `MatColoring` 1618 J*/ 1619 typedef const char *MatColoringType; 1620 #define MATCOLORINGJP "jp" 1621 #define MATCOLORINGPOWER "power" 1622 #define MATCOLORINGNATURAL "natural" 1623 #define MATCOLORINGSL "sl" 1624 #define MATCOLORINGLF "lf" 1625 #define MATCOLORINGID "id" 1626 #define MATCOLORINGGREEDY "greedy" 1627 1628 /*E 1629 MatColoringWeightType - Type of weight scheme used for the coloring algorithm 1630 1631 Values: 1632 + `MAT_COLORING_RANDOM` - Random weights 1633 . `MAT_COLORING_LEXICAL` - Lexical weighting based upon global numbering. 1634 - `MAT_COLORING_LF` - Last-first weighting. 1635 1636 Level: intermediate 1637 1638 .seealso: [](ch_matrices), `MatColoring`, `MatColoringCreate()`, `MatColoringSetWeightType()`, `MatColoringSetWeights()` 1639 E*/ 1640 typedef enum { 1641 MAT_COLORING_WEIGHT_RANDOM, 1642 MAT_COLORING_WEIGHT_LEXICAL, 1643 MAT_COLORING_WEIGHT_LF, 1644 MAT_COLORING_WEIGHT_SL 1645 } MatColoringWeightType; 1646 1647 PETSC_EXTERN PetscErrorCode MatColoringCreate(Mat, MatColoring *); 1648 PETSC_EXTERN PetscErrorCode MatColoringGetDegrees(Mat, PetscInt, PetscInt *); 1649 PETSC_EXTERN PetscErrorCode MatColoringDestroy(MatColoring *); 1650 PETSC_EXTERN PetscErrorCode MatColoringView(MatColoring, PetscViewer); 1651 PETSC_EXTERN PetscErrorCode MatColoringSetType(MatColoring, MatColoringType); 1652 PETSC_EXTERN PetscErrorCode MatColoringSetFromOptions(MatColoring); 1653 PETSC_EXTERN PetscErrorCode MatColoringSetDistance(MatColoring, PetscInt); 1654 PETSC_EXTERN PetscErrorCode MatColoringGetDistance(MatColoring, PetscInt *); 1655 PETSC_EXTERN PetscErrorCode MatColoringSetMaxColors(MatColoring, PetscInt); 1656 PETSC_EXTERN PetscErrorCode MatColoringGetMaxColors(MatColoring, PetscInt *); 1657 PETSC_EXTERN PetscErrorCode MatColoringApply(MatColoring, ISColoring *); 1658 PETSC_EXTERN PetscErrorCode MatColoringRegister(const char[], PetscErrorCode (*)(MatColoring)); 1659 PETSC_EXTERN PetscErrorCode MatColoringPatch(Mat, PetscInt, PetscInt, ISColoringValue[], ISColoring *); 1660 PETSC_EXTERN PetscErrorCode MatColoringSetWeightType(MatColoring, MatColoringWeightType); 1661 PETSC_EXTERN PetscErrorCode MatColoringSetWeights(MatColoring, PetscReal *, PetscInt *); 1662 PETSC_EXTERN PetscErrorCode MatColoringCreateWeights(MatColoring, PetscReal **, PetscInt **lperm); 1663 PETSC_EXTERN PetscErrorCode MatColoringTest(MatColoring, ISColoring); 1664 PETSC_DEPRECATED_FUNCTION(3, 10, 0, "MatColoringTest()", ) static inline PetscErrorCode MatColoringTestValid(MatColoring matcoloring, ISColoring iscoloring) 1665 { 1666 return MatColoringTest(matcoloring, iscoloring); 1667 } 1668 PETSC_EXTERN PetscErrorCode MatISColoringTest(Mat, ISColoring); 1669 1670 /*S 1671 MatFDColoring - Object for computing a sparse Jacobian via finite differences with coloring 1672 1673 Level: beginner 1674 1675 Notes: 1676 This object is creating utilizing a coloring provided by the `MatColoring` object or `DMCreateColoring()` 1677 1678 The `SNES` option `-snes_fd_coloring` will cause the Jacobian needed by `SNES` to be computed via a use of this object 1679 1680 .seealso: [](ch_matrices), `Mat`, `MatFDColoringCreate()`, `MatFDColoringSetFunction()`, `MatColoring`, `DMCreateColoring()` 1681 S*/ 1682 typedef struct _p_MatFDColoring *MatFDColoring; 1683 1684 PETSC_EXTERN PetscErrorCode MatFDColoringCreate(Mat, ISColoring, MatFDColoring *); 1685 PETSC_EXTERN PetscErrorCode MatFDColoringDestroy(MatFDColoring *); 1686 PETSC_EXTERN PetscErrorCode MatFDColoringView(MatFDColoring, PetscViewer); 1687 PETSC_EXTERN PetscErrorCode MatFDColoringSetFunction(MatFDColoring, PetscErrorCode (*)(void), void *); 1688 PETSC_EXTERN PetscErrorCode MatFDColoringGetFunction(MatFDColoring, PetscErrorCode (**)(void), void **); 1689 PETSC_EXTERN PetscErrorCode MatFDColoringSetParameters(MatFDColoring, PetscReal, PetscReal); 1690 PETSC_EXTERN PetscErrorCode MatFDColoringSetFromOptions(MatFDColoring); 1691 PETSC_EXTERN PetscErrorCode MatFDColoringApply(Mat, MatFDColoring, Vec, void *); 1692 PETSC_EXTERN PetscErrorCode MatFDColoringSetF(MatFDColoring, Vec); 1693 PETSC_EXTERN PetscErrorCode MatFDColoringGetPerturbedColumns(MatFDColoring, PetscInt *, const PetscInt *[]); 1694 PETSC_EXTERN PetscErrorCode MatFDColoringSetUp(Mat, ISColoring, MatFDColoring); 1695 PETSC_EXTERN PetscErrorCode MatFDColoringSetBlockSize(MatFDColoring, PetscInt, PetscInt); 1696 PETSC_EXTERN PetscErrorCode MatFDColoringSetValues(Mat, MatFDColoring, const PetscScalar *); 1697 1698 /*S 1699 MatTransposeColoring - Object for computing a sparse matrix product C=A*B^T via coloring 1700 1701 Level: developer 1702 1703 .seealso: [](ch_matrices), `Mat`, `MatProductType`, `MatTransposeColoringCreate()` 1704 S*/ 1705 typedef struct _p_MatTransposeColoring *MatTransposeColoring; 1706 1707 PETSC_EXTERN PetscErrorCode MatTransposeColoringCreate(Mat, ISColoring, MatTransposeColoring *); 1708 PETSC_EXTERN PetscErrorCode MatTransColoringApplySpToDen(MatTransposeColoring, Mat, Mat); 1709 PETSC_EXTERN PetscErrorCode MatTransColoringApplyDenToSp(MatTransposeColoring, Mat, Mat); 1710 PETSC_EXTERN PetscErrorCode MatTransposeColoringDestroy(MatTransposeColoring *); 1711 1712 /*S 1713 MatPartitioning - Object for managing the partitioning of a matrix or graph 1714 1715 Level: beginner 1716 1717 Note: 1718 There is also a `PetscPartitioner` object that provides the same functionality. It can utilize the `MatPartitioning` operations 1719 via `PetscPartitionerSetType`(p,`PETSCPARTITIONERMATPARTITIONING`) 1720 1721 Developers Note: 1722 It is an extra maintenance and documentation cost to have two objects with the same functionality. `PetscPartitioner` should be removed 1723 1724 .seealso: [](ch_matrices), [](sec_graph), `Mat`, `MatPartitioningCreate()`, `MatPartitioningType`, `MatColoring`, `MatGetOrdering()`, `MatOrderingType`, 1725 `MatCoarsenType`, `MatCoarsenType` 1726 S*/ 1727 typedef struct _p_MatPartitioning *MatPartitioning; 1728 1729 /*J 1730 MatPartitioningType - String with the name of a PETSc matrix partitioning 1731 1732 Level: beginner 1733 dm 1734 .seealso: [](ch_matrices), [](sec_graph), `Mat`, `MatPartitioningCreate()`, `MatPartitioning`, `MatPartitioningSetType()`, `MatColoringType`, `MatOrderingType`, 1735 `MatCoarsenType`, `MatCoarsenType` 1736 J*/ 1737 typedef const char *MatPartitioningType; 1738 #define MATPARTITIONINGCURRENT "current" 1739 #define MATPARTITIONINGAVERAGE "average" 1740 #define MATPARTITIONINGSQUARE "square" 1741 #define MATPARTITIONINGPARMETIS "parmetis" 1742 #define MATPARTITIONINGCHACO "chaco" 1743 #define MATPARTITIONINGPARTY "party" 1744 #define MATPARTITIONINGPTSCOTCH "ptscotch" 1745 #define MATPARTITIONINGHIERARCH "hierarch" 1746 1747 PETSC_EXTERN PetscErrorCode MatPartitioningCreate(MPI_Comm, MatPartitioning *); 1748 PETSC_EXTERN PetscErrorCode MatPartitioningSetType(MatPartitioning, MatPartitioningType); 1749 PETSC_EXTERN PetscErrorCode MatPartitioningSetNParts(MatPartitioning, PetscInt); 1750 PETSC_EXTERN PetscErrorCode MatPartitioningSetAdjacency(MatPartitioning, Mat); 1751 PETSC_EXTERN PetscErrorCode MatPartitioningSetNumberVertexWeights(MatPartitioning, PetscInt); 1752 PETSC_EXTERN PetscErrorCode MatPartitioningSetVertexWeights(MatPartitioning, const PetscInt[]); 1753 PETSC_EXTERN PetscErrorCode MatPartitioningSetPartitionWeights(MatPartitioning, const PetscReal[]); 1754 PETSC_EXTERN PetscErrorCode MatPartitioningSetUseEdgeWeights(MatPartitioning, PetscBool); 1755 PETSC_EXTERN PetscErrorCode MatPartitioningGetUseEdgeWeights(MatPartitioning, PetscBool *); 1756 PETSC_EXTERN PetscErrorCode MatPartitioningApply(MatPartitioning, IS *); 1757 PETSC_EXTERN PetscErrorCode MatPartitioningImprove(MatPartitioning, IS *); 1758 PETSC_EXTERN PetscErrorCode MatPartitioningViewImbalance(MatPartitioning, IS); 1759 PETSC_EXTERN PetscErrorCode MatPartitioningApplyND(MatPartitioning, IS *); 1760 PETSC_EXTERN PetscErrorCode MatPartitioningDestroy(MatPartitioning *); 1761 PETSC_EXTERN PetscErrorCode MatPartitioningRegister(const char[], PetscErrorCode (*)(MatPartitioning)); 1762 PETSC_EXTERN PetscErrorCode MatPartitioningView(MatPartitioning, PetscViewer); 1763 PETSC_EXTERN PetscErrorCode MatPartitioningViewFromOptions(MatPartitioning, PetscObject, const char[]); 1764 PETSC_EXTERN PetscErrorCode MatPartitioningSetFromOptions(MatPartitioning); 1765 PETSC_EXTERN PetscErrorCode MatPartitioningGetType(MatPartitioning, MatPartitioningType *); 1766 1767 PETSC_EXTERN PetscErrorCode MatPartitioningParmetisSetRepartition(MatPartitioning part); 1768 PETSC_EXTERN PetscErrorCode MatPartitioningParmetisSetCoarseSequential(MatPartitioning); 1769 PETSC_EXTERN PetscErrorCode MatPartitioningParmetisGetEdgeCut(MatPartitioning, PetscInt *); 1770 1771 typedef enum { 1772 MP_CHACO_MULTILEVEL = 1, 1773 MP_CHACO_SPECTRAL = 2, 1774 MP_CHACO_LINEAR = 4, 1775 MP_CHACO_RANDOM = 5, 1776 MP_CHACO_SCATTERED = 6 1777 } MPChacoGlobalType; 1778 PETSC_EXTERN const char *const MPChacoGlobalTypes[]; 1779 typedef enum { 1780 MP_CHACO_KERNIGHAN = 1, 1781 MP_CHACO_NONE = 2 1782 } MPChacoLocalType; 1783 PETSC_EXTERN const char *const MPChacoLocalTypes[]; 1784 typedef enum { 1785 MP_CHACO_LANCZOS = 0, 1786 MP_CHACO_RQI = 1 1787 } MPChacoEigenType; 1788 PETSC_EXTERN const char *const MPChacoEigenTypes[]; 1789 1790 PETSC_EXTERN PetscErrorCode MatPartitioningChacoSetGlobal(MatPartitioning, MPChacoGlobalType); 1791 PETSC_EXTERN PetscErrorCode MatPartitioningChacoGetGlobal(MatPartitioning, MPChacoGlobalType *); 1792 PETSC_EXTERN PetscErrorCode MatPartitioningChacoSetLocal(MatPartitioning, MPChacoLocalType); 1793 PETSC_EXTERN PetscErrorCode MatPartitioningChacoGetLocal(MatPartitioning, MPChacoLocalType *); 1794 PETSC_EXTERN PetscErrorCode MatPartitioningChacoSetCoarseLevel(MatPartitioning, PetscReal); 1795 PETSC_EXTERN PetscErrorCode MatPartitioningChacoSetEigenSolver(MatPartitioning, MPChacoEigenType); 1796 PETSC_EXTERN PetscErrorCode MatPartitioningChacoGetEigenSolver(MatPartitioning, MPChacoEigenType *); 1797 PETSC_EXTERN PetscErrorCode MatPartitioningChacoSetEigenTol(MatPartitioning, PetscReal); 1798 PETSC_EXTERN PetscErrorCode MatPartitioningChacoGetEigenTol(MatPartitioning, PetscReal *); 1799 PETSC_EXTERN PetscErrorCode MatPartitioningChacoSetEigenNumber(MatPartitioning, PetscInt); 1800 PETSC_EXTERN PetscErrorCode MatPartitioningChacoGetEigenNumber(MatPartitioning, PetscInt *); 1801 1802 #define MP_PARTY_OPT "opt" 1803 #define MP_PARTY_LIN "lin" 1804 #define MP_PARTY_SCA "sca" 1805 #define MP_PARTY_RAN "ran" 1806 #define MP_PARTY_GBF "gbf" 1807 #define MP_PARTY_GCF "gcf" 1808 #define MP_PARTY_BUB "bub" 1809 #define MP_PARTY_DEF "def" 1810 PETSC_EXTERN PetscErrorCode MatPartitioningPartySetGlobal(MatPartitioning, const char *); 1811 #define MP_PARTY_HELPFUL_SETS "hs" 1812 #define MP_PARTY_KERNIGHAN_LIN "kl" 1813 #define MP_PARTY_NONE "no" 1814 PETSC_EXTERN PetscErrorCode MatPartitioningPartySetLocal(MatPartitioning, const char *); 1815 PETSC_EXTERN PetscErrorCode MatPartitioningPartySetCoarseLevel(MatPartitioning, PetscReal); 1816 PETSC_EXTERN PetscErrorCode MatPartitioningPartySetBipart(MatPartitioning, PetscBool); 1817 PETSC_EXTERN PetscErrorCode MatPartitioningPartySetMatchOptimization(MatPartitioning, PetscBool); 1818 1819 typedef enum { 1820 MP_PTSCOTCH_DEFAULT, 1821 MP_PTSCOTCH_QUALITY, 1822 MP_PTSCOTCH_SPEED, 1823 MP_PTSCOTCH_BALANCE, 1824 MP_PTSCOTCH_SAFETY, 1825 MP_PTSCOTCH_SCALABILITY 1826 } MPPTScotchStrategyType; 1827 PETSC_EXTERN const char *const MPPTScotchStrategyTypes[]; 1828 1829 PETSC_EXTERN PetscErrorCode MatPartitioningPTScotchSetImbalance(MatPartitioning, PetscReal); 1830 PETSC_EXTERN PetscErrorCode MatPartitioningPTScotchGetImbalance(MatPartitioning, PetscReal *); 1831 PETSC_EXTERN PetscErrorCode MatPartitioningPTScotchSetStrategy(MatPartitioning, MPPTScotchStrategyType); 1832 PETSC_EXTERN PetscErrorCode MatPartitioningPTScotchGetStrategy(MatPartitioning, MPPTScotchStrategyType *); 1833 1834 /* 1835 * hierarchical partitioning 1836 */ 1837 PETSC_EXTERN PetscErrorCode MatPartitioningHierarchicalGetFineparts(MatPartitioning, IS *); 1838 PETSC_EXTERN PetscErrorCode MatPartitioningHierarchicalGetCoarseparts(MatPartitioning, IS *); 1839 PETSC_EXTERN PetscErrorCode MatPartitioningHierarchicalSetNcoarseparts(MatPartitioning, PetscInt); 1840 PETSC_EXTERN PetscErrorCode MatPartitioningHierarchicalSetNfineparts(MatPartitioning, PetscInt); 1841 1842 PETSC_EXTERN PetscErrorCode MatMeshToCellGraph(Mat, PetscInt, Mat *); 1843 1844 /* 1845 If you add entries here you must also add them to src/mat/f90-mod/petscmat.h 1846 If any of the enum values are changed, also update dMatOps dict at src/binding/petsc4py/src/libpetsc4py/libpetsc4py.pyx 1847 */ 1848 typedef enum { 1849 MATOP_SET_VALUES = 0, 1850 MATOP_GET_ROW = 1, 1851 MATOP_RESTORE_ROW = 2, 1852 MATOP_MULT = 3, 1853 MATOP_MULT_ADD = 4, 1854 MATOP_MULT_TRANSPOSE = 5, 1855 MATOP_MULT_TRANSPOSE_ADD = 6, 1856 MATOP_SOLVE = 7, 1857 MATOP_SOLVE_ADD = 8, 1858 MATOP_SOLVE_TRANSPOSE = 9, 1859 MATOP_SOLVE_TRANSPOSE_ADD = 10, 1860 MATOP_LUFACTOR = 11, 1861 MATOP_CHOLESKYFACTOR = 12, 1862 MATOP_SOR = 13, 1863 MATOP_TRANSPOSE = 14, 1864 MATOP_GETINFO = 15, 1865 MATOP_EQUAL = 16, 1866 MATOP_GET_DIAGONAL = 17, 1867 MATOP_DIAGONAL_SCALE = 18, 1868 MATOP_NORM = 19, 1869 MATOP_ASSEMBLY_BEGIN = 20, 1870 MATOP_ASSEMBLY_END = 21, 1871 MATOP_SET_OPTION = 22, 1872 MATOP_ZERO_ENTRIES = 23, 1873 MATOP_ZERO_ROWS = 24, 1874 MATOP_LUFACTOR_SYMBOLIC = 25, 1875 MATOP_LUFACTOR_NUMERIC = 26, 1876 MATOP_CHOLESKY_FACTOR_SYMBOLIC = 27, 1877 MATOP_CHOLESKY_FACTOR_NUMERIC = 28, 1878 MATOP_SETUP = 29, 1879 MATOP_ILUFACTOR_SYMBOLIC = 30, 1880 MATOP_ICCFACTOR_SYMBOLIC = 31, 1881 MATOP_GET_DIAGONAL_BLOCK = 32, 1882 MATOP_SET_INF = 33, 1883 MATOP_DUPLICATE = 34, 1884 MATOP_FORWARD_SOLVE = 35, 1885 MATOP_BACKWARD_SOLVE = 36, 1886 MATOP_ILUFACTOR = 37, 1887 MATOP_ICCFACTOR = 38, 1888 MATOP_AXPY = 39, 1889 MATOP_CREATE_SUBMATRICES = 40, 1890 MATOP_INCREASE_OVERLAP = 41, 1891 MATOP_GET_VALUES = 42, 1892 MATOP_COPY = 43, 1893 MATOP_GET_ROW_MAX = 44, 1894 MATOP_SCALE = 45, 1895 MATOP_SHIFT = 46, 1896 MATOP_DIAGONAL_SET = 47, 1897 MATOP_ZERO_ROWS_COLUMNS = 48, 1898 MATOP_SET_RANDOM = 49, 1899 MATOP_GET_ROW_IJ = 50, 1900 MATOP_RESTORE_ROW_IJ = 51, 1901 MATOP_GET_COLUMN_IJ = 52, 1902 MATOP_RESTORE_COLUMN_IJ = 53, 1903 MATOP_FDCOLORING_CREATE = 54, 1904 MATOP_COLORING_PATCH = 55, 1905 MATOP_SET_UNFACTORED = 56, 1906 MATOP_PERMUTE = 57, 1907 MATOP_SET_VALUES_BLOCKED = 58, 1908 MATOP_CREATE_SUBMATRIX = 59, 1909 MATOP_DESTROY = 60, 1910 MATOP_VIEW = 61, 1911 MATOP_CONVERT_FROM = 62, 1912 /* MATOP_PLACEHOLDER_63=63 */ 1913 MATOP_MATMAT_MULT_SYMBOLIC = 64, 1914 MATOP_MATMAT_MULT_NUMERIC = 65, 1915 MATOP_SET_LOCAL_TO_GLOBAL_MAP = 66, 1916 MATOP_SET_VALUES_LOCAL = 67, 1917 MATOP_ZERO_ROWS_LOCAL = 68, 1918 MATOP_GET_ROW_MAX_ABS = 69, 1919 MATOP_GET_ROW_MIN_ABS = 70, 1920 MATOP_CONVERT = 71, 1921 MATOP_HAS_OPERATION = 72, 1922 /* MATOP_PLACEHOLDER_73=73, */ 1923 MATOP_SET_VALUES_ADIFOR = 74, 1924 MATOP_FD_COLORING_APPLY = 75, 1925 MATOP_SET_FROM_OPTIONS = 76, 1926 /* MATOP_PLACEHOLDER_77=77, */ 1927 /* MATOP_PLACEHOLDER_78=78, */ 1928 MATOP_FIND_ZERO_DIAGONALS = 79, 1929 MATOP_MULT_MULTIPLE = 80, 1930 MATOP_SOLVE_MULTIPLE = 81, 1931 MATOP_GET_INERTIA = 82, 1932 MATOP_LOAD = 83, 1933 MATOP_IS_SYMMETRIC = 84, 1934 MATOP_IS_HERMITIAN = 85, 1935 MATOP_IS_STRUCTURALLY_SYMMETRIC = 86, 1936 MATOP_SET_VALUES_BLOCKEDLOCAL = 87, 1937 MATOP_CREATE_VECS = 88, 1938 /* MATOP_PLACEHOLDER_89=89, */ 1939 MATOP_MAT_MULT_SYMBOLIC = 90, 1940 MATOP_MAT_MULT_NUMERIC = 91, 1941 /* MATOP_PLACEHOLDER_92=92, */ 1942 MATOP_PTAP_SYMBOLIC = 93, 1943 MATOP_PTAP_NUMERIC = 94, 1944 /* MATOP_PLACEHOLDER_95=95, */ 1945 MATOP_MAT_TRANSPOSE_MULT_SYMBO = 96, 1946 MATOP_MAT_TRANSPOSE_MULT_NUMER = 97, 1947 MATOP_BIND_TO_CPU = 98, 1948 MATOP_PRODUCTSETFROMOPTIONS = 99, 1949 MATOP_PRODUCTSYMBOLIC = 100, 1950 MATOP_PRODUCTNUMERIC = 101, 1951 MATOP_CONJUGATE = 102, 1952 MATOP_VIEW_NATIVE = 103, 1953 MATOP_SET_VALUES_ROW = 104, 1954 MATOP_REAL_PART = 105, 1955 MATOP_IMAGINARY_PART = 106, 1956 MATOP_GET_ROW_UPPER_TRIANGULAR = 107, 1957 MATOP_RESTORE_ROW_UPPER_TRIANG = 108, 1958 MATOP_MAT_SOLVE = 109, 1959 MATOP_MAT_SOLVE_TRANSPOSE = 110, 1960 MATOP_GET_ROW_MIN = 111, 1961 MATOP_GET_COLUMN_VECTOR = 112, 1962 MATOP_MISSING_DIAGONAL = 113, 1963 MATOP_GET_SEQ_NONZERO_STRUCTUR = 114, 1964 MATOP_CREATE = 115, 1965 MATOP_GET_GHOSTS = 116, 1966 MATOP_GET_LOCAL_SUB_MATRIX = 117, 1967 MATOP_RESTORE_LOCALSUB_MATRIX = 118, 1968 MATOP_MULT_DIAGONAL_BLOCK = 119, 1969 MATOP_HERMITIAN_TRANSPOSE = 120, 1970 MATOP_MULT_HERMITIAN_TRANSPOSE = 121, 1971 MATOP_MULT_HERMITIAN_TRANS_ADD = 122, 1972 MATOP_GET_MULTI_PROC_BLOCK = 123, 1973 MATOP_FIND_NONZERO_ROWS = 124, 1974 MATOP_GET_COLUMN_NORMS = 125, 1975 MATOP_INVERT_BLOCK_DIAGONAL = 126, 1976 MATOP_INVERT_VBLOCK_DIAGONAL = 127, 1977 MATOP_CREATE_SUB_MATRICES_MPI = 128, 1978 MATOP_SET_VALUES_BATCH = 129, 1979 /* MATOP_PLACEHOLDER_130=130, */ 1980 MATOP_TRANSPOSE_MAT_MULT_SYMBO = 131, 1981 MATOP_TRANSPOSE_MAT_MULT_NUMER = 132, 1982 MATOP_TRANSPOSE_COLORING_CREAT = 133, 1983 MATOP_TRANS_COLORING_APPLY_SPT = 134, 1984 MATOP_TRANS_COLORING_APPLY_DEN = 135, 1985 /* MATOP_PLACEHOLDER_136=136, */ 1986 MATOP_RART_SYMBOLIC = 137, 1987 MATOP_RART_NUMERIC = 138, 1988 MATOP_SET_BLOCK_SIZES = 139, 1989 MATOP_AYPX = 140, 1990 MATOP_RESIDUAL = 141, 1991 MATOP_FDCOLORING_SETUP = 142, 1992 MATOP_FIND_OFFBLOCK_ENTRIES = 143, 1993 MATOP_MPICONCATENATESEQ = 144, 1994 MATOP_DESTROYSUBMATRICES = 145, 1995 MATOP_TRANSPOSE_SOLVE = 146, 1996 MATOP_GET_VALUES_LOCAL = 147 1997 } MatOperation; 1998 PETSC_EXTERN PetscErrorCode MatSetOperation(Mat, MatOperation, void (*)(void)); 1999 PETSC_EXTERN PetscErrorCode MatGetOperation(Mat, MatOperation, void (**)(void)); 2000 PETSC_EXTERN PetscErrorCode MatHasOperation(Mat, MatOperation, PetscBool *); 2001 PETSC_EXTERN PetscErrorCode MatHasCongruentLayouts(Mat, PetscBool *); 2002 PETSC_DEPRECATED_FUNCTION(3, 14, 0, "MatProductClear()", ) static inline PetscErrorCode MatFreeIntermediateDataStructures(Mat A) 2003 { 2004 return MatProductClear(A); 2005 } 2006 PETSC_EXTERN PetscErrorCode MatShellSetOperation(Mat, MatOperation, void (*)(void)); 2007 PETSC_EXTERN PetscErrorCode MatShellGetOperation(Mat, MatOperation, void (**)(void)); 2008 PETSC_EXTERN PetscErrorCode MatShellSetContext(Mat, void *); 2009 PETSC_EXTERN PetscErrorCode MatShellSetContextDestroy(Mat, PetscErrorCode (*)(void *)); 2010 PETSC_EXTERN PetscErrorCode MatShellSetVecType(Mat, VecType); 2011 PETSC_EXTERN PetscErrorCode MatShellTestMult(Mat, PetscErrorCode (*)(void *, Vec, Vec), Vec, void *, PetscBool *); 2012 PETSC_EXTERN PetscErrorCode MatShellTestMultTranspose(Mat, PetscErrorCode (*)(void *, Vec, Vec), Vec, void *, PetscBool *); 2013 PETSC_EXTERN PetscErrorCode MatShellSetManageScalingShifts(Mat); 2014 PETSC_EXTERN PetscErrorCode MatShellSetMatProductOperation(Mat, MatProductType, PetscErrorCode (*)(Mat, Mat, Mat, void **), PetscErrorCode (*)(Mat, Mat, Mat, void *), PetscErrorCode (*)(void *), MatType, MatType); 2015 PETSC_EXTERN PetscErrorCode MatIsShell(Mat, PetscBool *); 2016 2017 /* 2018 Codes for matrices stored on disk. By default they are 2019 stored in a universal format. By changing the format with 2020 PetscViewerPushFormat(viewer,PETSC_VIEWER_NATIVE); the matrices will 2021 be stored in a way natural for the matrix, for example dense matrices 2022 would be stored as dense. Matrices stored this way may only be 2023 read into matrices of the same type. 2024 */ 2025 #define MATRIX_BINARY_FORMAT_DENSE -1 2026 2027 PETSC_EXTERN PetscErrorCode MatMPIBAIJSetHashTableFactor(Mat, PetscReal); 2028 2029 PETSC_EXTERN PetscErrorCode MatISSetLocalMatType(Mat, MatType); 2030 PETSC_EXTERN PetscErrorCode MatISSetPreallocation(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[]); 2031 PETSC_EXTERN PetscErrorCode MatISStoreL2L(Mat, PetscBool); 2032 PETSC_EXTERN PetscErrorCode MatISFixLocalEmpty(Mat, PetscBool); 2033 PETSC_EXTERN PetscErrorCode MatISGetLocalMat(Mat, Mat *); 2034 PETSC_EXTERN PetscErrorCode MatISRestoreLocalMat(Mat, Mat *); 2035 PETSC_EXTERN PetscErrorCode MatISSetLocalMat(Mat, Mat); 2036 PETSC_EXTERN PetscErrorCode MatISGetLocalToGlobalMapping(Mat, ISLocalToGlobalMapping *, ISLocalToGlobalMapping *); 2037 PETSC_EXTERN PETSC_DEPRECATED_FUNCTION(3, 10, 0, "MatConvert()", ) PetscErrorCode MatISGetMPIXAIJ(Mat, MatReuse, Mat *); 2038 2039 /*S 2040 MatNullSpace - Object that removes a null space from a vector, i.e. 2041 orthogonalizes the vector to a subspace 2042 2043 Level: advanced 2044 2045 .seealso: [](ch_matrices), `Mat`, `MatNullSpaceCreate()`, `MatNullSpaceSetFunction()`, `MatGetNullSpace()`, `MatSetNullSpace()` 2046 S*/ 2047 typedef struct _p_MatNullSpace *MatNullSpace; 2048 2049 PETSC_EXTERN PetscErrorCode MatNullSpaceCreate(MPI_Comm, PetscBool, PetscInt, const Vec[], MatNullSpace *); 2050 PETSC_EXTERN PetscErrorCode MatNullSpaceSetFunction(MatNullSpace, PetscErrorCode (*)(MatNullSpace, Vec, void *), void *); 2051 PETSC_EXTERN PetscErrorCode MatNullSpaceDestroy(MatNullSpace *); 2052 PETSC_EXTERN PetscErrorCode MatNullSpaceRemove(MatNullSpace, Vec); 2053 PETSC_EXTERN PetscErrorCode MatGetNullSpace(Mat, MatNullSpace *); 2054 PETSC_EXTERN PetscErrorCode MatGetTransposeNullSpace(Mat, MatNullSpace *); 2055 PETSC_EXTERN PetscErrorCode MatSetTransposeNullSpace(Mat, MatNullSpace); 2056 PETSC_EXTERN PetscErrorCode MatSetNullSpace(Mat, MatNullSpace); 2057 PETSC_EXTERN PetscErrorCode MatSetNearNullSpace(Mat, MatNullSpace); 2058 PETSC_EXTERN PetscErrorCode MatGetNearNullSpace(Mat, MatNullSpace *); 2059 PETSC_EXTERN PetscErrorCode MatNullSpaceTest(MatNullSpace, Mat, PetscBool *); 2060 PETSC_EXTERN PetscErrorCode MatNullSpaceView(MatNullSpace, PetscViewer); 2061 PETSC_EXTERN PetscErrorCode MatNullSpaceGetVecs(MatNullSpace, PetscBool *, PetscInt *, const Vec **); 2062 PETSC_EXTERN PetscErrorCode MatNullSpaceCreateRigidBody(Vec, MatNullSpace *); 2063 2064 PETSC_EXTERN PetscErrorCode MatReorderingSeqSBAIJ(Mat, IS); 2065 PETSC_EXTERN PetscErrorCode MatMPISBAIJSetHashTableFactor(Mat, PetscReal); 2066 PETSC_EXTERN PetscErrorCode MatSeqSBAIJSetColumnIndices(Mat, PetscInt *); 2067 2068 PETSC_EXTERN PetscErrorCode MatCreateMAIJ(Mat, PetscInt, Mat *); 2069 PETSC_EXTERN PetscErrorCode MatMAIJRedimension(Mat, PetscInt, Mat *); 2070 PETSC_EXTERN PetscErrorCode MatMAIJGetAIJ(Mat, Mat *); 2071 2072 PETSC_EXTERN PetscErrorCode MatComputeOperator(Mat, MatType, Mat *); 2073 PETSC_EXTERN PetscErrorCode MatComputeOperatorTranspose(Mat, MatType, Mat *); 2074 2075 PETSC_DEPRECATED_FUNCTION(3, 12, 0, "MatComputeOperator()", ) static inline PetscErrorCode MatComputeExplicitOperator(Mat A, Mat *B) 2076 { 2077 return MatComputeOperator(A, PETSC_NULLPTR, B); 2078 } 2079 PETSC_DEPRECATED_FUNCTION(3, 12, 0, "MatComputeOperatorTranspose()", ) static inline PetscErrorCode MatComputeExplicitOperatorTranspose(Mat A, Mat *B) 2080 { 2081 return MatComputeOperatorTranspose(A, PETSC_NULLPTR, B); 2082 } 2083 2084 PETSC_EXTERN PetscErrorCode MatCreateKAIJ(Mat, PetscInt, PetscInt, const PetscScalar[], const PetscScalar[], Mat *); 2085 PETSC_EXTERN PetscErrorCode MatKAIJGetAIJ(Mat, Mat *); 2086 PETSC_EXTERN PetscErrorCode MatKAIJGetS(Mat, PetscInt *, PetscInt *, PetscScalar **); 2087 PETSC_EXTERN PetscErrorCode MatKAIJGetSRead(Mat, PetscInt *, PetscInt *, const PetscScalar **); 2088 PETSC_EXTERN PetscErrorCode MatKAIJRestoreS(Mat, PetscScalar **); 2089 PETSC_EXTERN PetscErrorCode MatKAIJRestoreSRead(Mat, const PetscScalar **); 2090 PETSC_EXTERN PetscErrorCode MatKAIJGetT(Mat, PetscInt *, PetscInt *, PetscScalar **); 2091 PETSC_EXTERN PetscErrorCode MatKAIJGetTRead(Mat, PetscInt *, PetscInt *, const PetscScalar **); 2092 PETSC_EXTERN PetscErrorCode MatKAIJRestoreT(Mat, PetscScalar **); 2093 PETSC_EXTERN PetscErrorCode MatKAIJRestoreTRead(Mat, const PetscScalar **); 2094 PETSC_EXTERN PetscErrorCode MatKAIJSetAIJ(Mat, Mat); 2095 PETSC_EXTERN PetscErrorCode MatKAIJSetS(Mat, PetscInt, PetscInt, const PetscScalar[]); 2096 PETSC_EXTERN PetscErrorCode MatKAIJSetT(Mat, PetscInt, PetscInt, const PetscScalar[]); 2097 PETSC_EXTERN PetscErrorCode MatKAIJGetScaledIdentity(Mat, PetscBool *); 2098 2099 PETSC_EXTERN PetscErrorCode MatDiagonalScaleLocal(Mat, Vec); 2100 2101 PETSC_EXTERN PetscErrorCode MatMFFDInitializePackage(void); 2102 PETSC_EXTERN PetscErrorCode MatMFFDFinalizePackage(void); 2103 2104 PETSC_EXTERN PetscErrorCode MatCreateMFFD(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, Mat *); 2105 PETSC_EXTERN PetscErrorCode MatMFFDSetBase(Mat, Vec, Vec); 2106 PETSC_EXTERN PetscErrorCode MatMFFDSetFunction(Mat, PetscErrorCode (*)(void *, Vec, Vec), void *); 2107 PETSC_EXTERN PetscErrorCode MatMFFDSetFunctioni(Mat, PetscErrorCode (*)(void *, PetscInt, Vec, PetscScalar *)); 2108 PETSC_EXTERN PetscErrorCode MatMFFDSetFunctioniBase(Mat, PetscErrorCode (*)(void *, Vec)); 2109 PETSC_EXTERN PetscErrorCode MatMFFDSetHHistory(Mat, PetscScalar[], PetscInt); 2110 PETSC_EXTERN PetscErrorCode MatMFFDResetHHistory(Mat); 2111 PETSC_EXTERN PetscErrorCode MatMFFDSetFunctionError(Mat, PetscReal); 2112 PETSC_EXTERN PetscErrorCode MatMFFDSetPeriod(Mat, PetscInt); 2113 PETSC_EXTERN PetscErrorCode MatMFFDGetH(Mat, PetscScalar *); 2114 PETSC_EXTERN PetscErrorCode MatMFFDSetOptionsPrefix(Mat, const char[]); 2115 PETSC_EXTERN PetscErrorCode MatMFFDCheckPositivity(void *, Vec, Vec, PetscScalar *); 2116 PETSC_EXTERN PetscErrorCode MatMFFDSetCheckh(Mat, PetscErrorCode (*)(void *, Vec, Vec, PetscScalar *), void *); 2117 2118 /*S 2119 MatMFFD - A data structured used to manage the computation of the h differencing parameter for matrix-free 2120 Jacobian vector products 2121 2122 Level: developer 2123 2124 Notes: 2125 `MATMFFD` is a specific `MatType` which uses the `MatMFFD` data structure 2126 2127 MatMFFD*() methods actually take the `Mat` as their first argument. Not a `MatMFFD` data structure 2128 2129 This functionality is often obtained using `MatCreateSNESMF()` or with `SNES` solvers using `-snes_mf` or `-snes_mf_operator` 2130 2131 .seealso: [](ch_matrices), `MatMFFDType`, `MATMFFD`, `MatCreateMFFD()`, `MatMFFDSetFuction()`, `MatMFFDSetType()`, `MatMFFDRegister()`, 2132 `MatCreateSNESMF()`, `SNES`, `-snes_mf`, `-snes_mf_operator` 2133 S*/ 2134 typedef struct _p_MatMFFD *MatMFFD; 2135 2136 /*J 2137 MatMFFDType - algorithm used to compute the `h` used in computing matrix-vector products via differencing of a function 2138 2139 Values: 2140 + `MATMFFD_DS` - an algorithm described by Dennis and Schnabel 2141 - `MATMFFD_WP` - the Walker-Pernice strategy. 2142 2143 Level: beginner 2144 2145 .seealso: [](ch_matrices), `MatMFFDSetType()`, `MatMFFDRegister()`, `MatMFFDSetFunction()`, `MatCreateMFFD()` 2146 J*/ 2147 typedef const char *MatMFFDType; 2148 #define MATMFFD_DS "ds" 2149 #define MATMFFD_WP "wp" 2150 2151 PETSC_EXTERN PetscErrorCode MatMFFDSetType(Mat, MatMFFDType); 2152 PETSC_EXTERN PetscErrorCode MatMFFDRegister(const char[], PetscErrorCode (*)(MatMFFD)); 2153 2154 PETSC_EXTERN PetscErrorCode MatMFFDDSSetUmin(Mat, PetscReal); 2155 PETSC_EXTERN PetscErrorCode MatMFFDWPSetComputeNormU(Mat, PetscBool); 2156 2157 PETSC_EXTERN PetscErrorCode MatFDColoringSetType(MatFDColoring, MatMFFDType); 2158 2159 PETSC_EXTERN PetscErrorCode PetscViewerMathematicaPutMatrix(PetscViewer, PetscInt, PetscInt, PetscReal *); 2160 PETSC_EXTERN PetscErrorCode PetscViewerMathematicaPutCSRMatrix(PetscViewer, PetscInt, PetscInt, PetscInt *, PetscInt *, PetscReal *); 2161 2162 #ifdef PETSC_HAVE_H2OPUS 2163 PETSC_EXTERN_TYPEDEF typedef PetscScalar (*MatH2OpusKernel)(PetscInt, PetscReal[], PetscReal[], void *); 2164 PETSC_EXTERN PetscErrorCode MatCreateH2OpusFromKernel(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscReal[], PetscBool, MatH2OpusKernel, void *, PetscReal, PetscInt, PetscInt, Mat *); 2165 PETSC_EXTERN PetscErrorCode MatCreateH2OpusFromMat(Mat, PetscInt, const PetscReal[], PetscBool, PetscReal, PetscInt, PetscInt, PetscInt, PetscReal, Mat *); 2166 PETSC_EXTERN PetscErrorCode MatH2OpusSetSamplingMat(Mat, Mat, PetscInt, PetscReal); 2167 PETSC_EXTERN PetscErrorCode MatH2OpusOrthogonalize(Mat); 2168 PETSC_EXTERN PetscErrorCode MatH2OpusCompress(Mat, PetscReal); 2169 PETSC_EXTERN PetscErrorCode MatH2OpusSetNativeMult(Mat, PetscBool); 2170 PETSC_EXTERN PetscErrorCode MatH2OpusGetNativeMult(Mat, PetscBool *); 2171 PETSC_EXTERN PetscErrorCode MatH2OpusGetIndexMap(Mat, IS *); 2172 PETSC_EXTERN PetscErrorCode MatH2OpusMapVec(Mat, PetscBool, Vec, Vec *); 2173 PETSC_EXTERN PetscErrorCode MatH2OpusLowRankUpdate(Mat, Mat, Mat, PetscScalar); 2174 #endif 2175 2176 #ifdef PETSC_HAVE_HTOOL 2177 PETSC_EXTERN_TYPEDEF typedef PetscErrorCode (*MatHtoolKernel)(PetscInt, PetscInt, PetscInt, const PetscInt *, const PetscInt *, PetscScalar *, void *); 2178 PETSC_EXTERN PetscErrorCode MatCreateHtoolFromKernel(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscReal[], const PetscReal[], MatHtoolKernel, void *, Mat *); 2179 PETSC_EXTERN PetscErrorCode MatHtoolSetKernel(Mat, MatHtoolKernel, void *); 2180 PETSC_EXTERN PetscErrorCode MatHtoolGetPermutationSource(Mat, IS *); 2181 PETSC_EXTERN PetscErrorCode MatHtoolGetPermutationTarget(Mat, IS *); 2182 PETSC_EXTERN PetscErrorCode MatHtoolUsePermutation(Mat, PetscBool); 2183 2184 /*E 2185 MatHtoolCompressorType - Indicates the type of compressor used by a `MATHTOOL` 2186 2187 Values: 2188 + `MAT_HTOOL_COMPRESSOR_SYMPARTIAL_ACA` (default) - symmetric partial adaptive cross approximation 2189 . `MAT_HTOOL_COMPRESSOR_FULL_ACA` - full adaptive cross approximation 2190 - `MAT_HTOOL_COMPRESSOR_SVD` - singular value decomposition 2191 2192 Level: intermediate 2193 2194 .seealso: [](ch_matrices), `Mat`, `MatCreateHtoolFromKernel()`, `MATHTOOL`, `MatHtoolClusteringType` 2195 E*/ 2196 typedef enum { 2197 MAT_HTOOL_COMPRESSOR_SYMPARTIAL_ACA, 2198 MAT_HTOOL_COMPRESSOR_FULL_ACA, 2199 MAT_HTOOL_COMPRESSOR_SVD 2200 } MatHtoolCompressorType; 2201 2202 /*E 2203 MatHtoolClusteringType - Indicates the type of clustering used by a `MATHTOOL` 2204 2205 Values: 2206 + `MAT_HTOOL_CLUSTERING_PCA_REGULAR` (default) - axis computed via principle component analysis, split uniformly 2207 . `MAT_HTOOL_CLUSTERING_PCA_GEOMETRIC` - axis computed via principle component analysis, split barycentrically 2208 . `MAT_HTOOL_CLUSTERING_BOUNDING_BOX_1_REGULAR` - axis along the largest extent of the bounding box, split uniformly 2209 - `MAT_HTOOL_CLUSTERING_BOUNDING_BOX_1_GEOMETRIC` - axis along the largest extent of the bounding box, split barycentrically 2210 2211 Level: intermediate 2212 2213 Note: 2214 Higher-dimensional clustering is not yet supported in Htool, but once it is, one should add BOUNDING_BOX_{2,3} types 2215 2216 .seealso: [](ch_matrices), `Mat`, `MatCreateHtoolFromKernel()`, `MATHTOOL`, `MatHtoolCompressorType` 2217 E*/ 2218 typedef enum { 2219 MAT_HTOOL_CLUSTERING_PCA_REGULAR, 2220 MAT_HTOOL_CLUSTERING_PCA_GEOMETRIC, 2221 MAT_HTOOL_CLUSTERING_BOUNDING_BOX_1_REGULAR, 2222 MAT_HTOOL_CLUSTERING_BOUNDING_BOX_1_GEOMETRIC 2223 } MatHtoolClusteringType; 2224 #endif 2225 2226 #ifdef PETSC_HAVE_MUMPS 2227 PETSC_EXTERN PetscErrorCode MatMumpsSetIcntl(Mat, PetscInt, PetscInt); 2228 PETSC_EXTERN PetscErrorCode MatMumpsGetIcntl(Mat, PetscInt, PetscInt *); 2229 PETSC_EXTERN PetscErrorCode MatMumpsSetCntl(Mat, PetscInt, PetscReal); 2230 PETSC_EXTERN PetscErrorCode MatMumpsGetCntl(Mat, PetscInt, PetscReal *); 2231 2232 PETSC_EXTERN PetscErrorCode MatMumpsGetInfo(Mat, PetscInt, PetscInt *); 2233 PETSC_EXTERN PetscErrorCode MatMumpsGetInfog(Mat, PetscInt, PetscInt *); 2234 PETSC_EXTERN PetscErrorCode MatMumpsGetRinfo(Mat, PetscInt, PetscReal *); 2235 PETSC_EXTERN PetscErrorCode MatMumpsGetRinfog(Mat, PetscInt, PetscReal *); 2236 PETSC_EXTERN PetscErrorCode MatMumpsGetNullPivots(Mat, PetscInt *, PetscInt **); 2237 PETSC_EXTERN PetscErrorCode MatMumpsGetInverse(Mat, Mat); 2238 PETSC_EXTERN PetscErrorCode MatMumpsGetInverseTranspose(Mat, Mat); 2239 #endif 2240 2241 #ifdef PETSC_HAVE_MKL_PARDISO 2242 PETSC_EXTERN PetscErrorCode MatMkl_PardisoSetCntl(Mat, PetscInt, PetscInt); 2243 #endif 2244 2245 #ifdef PETSC_HAVE_MKL_CPARDISO 2246 PETSC_EXTERN PetscErrorCode MatMkl_CPardisoSetCntl(Mat, PetscInt, PetscInt); 2247 #endif 2248 2249 #ifdef PETSC_HAVE_SUPERLU 2250 PETSC_EXTERN PetscErrorCode MatSuperluSetILUDropTol(Mat, PetscReal); 2251 #endif 2252 2253 #ifdef PETSC_HAVE_SUPERLU_DIST 2254 PETSC_EXTERN PetscErrorCode MatSuperluDistGetDiagU(Mat, PetscScalar *); 2255 #endif 2256 2257 #ifdef PETSC_HAVE_STRUMPACK 2258 /*E 2259 MatSTRUMPACKReordering - sparsity reducing ordering to be used in `MATSOLVERSTRUMPACK` 2260 2261 Values: 2262 + `MAT_STRUMPACK_NATURAL` - use the current ordering 2263 . `MAT_STRUMPACK_METIS` - use MeTis to compute an ordering 2264 . `MAT_STRUMPACK_PARMETIS` - use ParMeTis to compute an ordering 2265 . `MAT_STRUMPACK_SCOTCH` - use Scotch to compute an ordering 2266 . `MAT_STRUMPACK_PTSCOTCH` - use parallel Scotch to compute an ordering 2267 . `MAT_STRUMPACK_RCM` - use an RCM ordering 2268 . `MAT_STRUMPACK_GEOMETRIC` - use a geometric ordering (needs mesh info from user) 2269 . `MAT_STRUMPACK_AMD` - approximate minimum degree 2270 . `MAT_STRUMPACK_MMD` - multiple minimum degree 2271 . `MAT_STRUMPACK_AND` - approximate nested dissection 2272 . `MAT_STRUMPACK_MLF` - minimum local fill 2273 - `MAT_STRUMPACK_SPECTRAL` - spectral nested dissection 2274 2275 Level: intermediate 2276 2277 Developer Note: 2278 Should be called `MatSTRUMPACKReorderingType` 2279 2280 .seealso: `Mat`, `MATSOLVERSTRUMPACK`, `MatGetFactor()`, `MatSTRUMPACKSetReordering()` 2281 E*/ 2282 typedef enum { 2283 MAT_STRUMPACK_NATURAL, 2284 MAT_STRUMPACK_METIS, 2285 MAT_STRUMPACK_PARMETIS, 2286 MAT_STRUMPACK_SCOTCH, 2287 MAT_STRUMPACK_PTSCOTCH, 2288 MAT_STRUMPACK_RCM, 2289 MAT_STRUMPACK_GEOMETRIC, 2290 MAT_STRUMPACK_AMD, 2291 MAT_STRUMPACK_MMD, 2292 MAT_STRUMPACK_AND, 2293 MAT_STRUMPACK_MLF, 2294 MAT_STRUMPACK_SPECTRAL 2295 } MatSTRUMPACKReordering; 2296 2297 PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetReordering(Mat, MatSTRUMPACKReordering); 2298 PETSC_EXTERN PetscErrorCode MatSTRUMPACKGetReordering(Mat, MatSTRUMPACKReordering *); 2299 PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetGeometricNxyz(Mat, PetscInt, PetscInt, PetscInt); 2300 PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetGeometricComponents(Mat, PetscInt); 2301 PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetGeometricWidth(Mat, PetscInt); 2302 PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetColPerm(Mat, PetscBool); 2303 PETSC_EXTERN PetscErrorCode MatSTRUMPACKGetColPerm(Mat, PetscBool *); 2304 PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetGPU(Mat, PetscBool); 2305 PETSC_EXTERN PetscErrorCode MatSTRUMPACKGetGPU(Mat, PetscBool *); 2306 2307 /*E 2308 MatSTRUMPACKCompressionType - Compression used in the approximate sparse factorization solver `MATSOLVERSTRUMPACK` 2309 2310 Values: 2311 + `MAT_STRUMPACK_COMPRESSION_TYPE_NONE` - no compression, direct solver 2312 . `MAT_STRUMPACK_COMPRESSION_TYPE_HSS` - hierarchically semi-separable 2313 . `MAT_STRUMPACK_COMPRESSION_TYPE_BLR` - block low rank 2314 . `MAT_STRUMPACK_COMPRESSION_TYPE_HODLR` - hierarchically off-diagonal low rank (requires ButterfyPACK support, configure with --download-butterflypack) 2315 . `MAT_STRUMPACK_COMPRESSION_TYPE_BLR_HODLR` - hybrid of BLR and HODLR (requires ButterfyPACK support, configure with --download-butterflypack) 2316 . `MAT_STRUMPACK_COMPRESSION_TYPE_ZFP_BLR_HODLR` - hybrid of lossy (ZFP), BLR and HODLR (requires ButterfyPACK and ZFP support, configure with --download-butterflypack --download-zfp) 2317 . `MAT_STRUMPACK_COMPRESSION_TYPE_LOSSLESS` - lossless compression (requires ZFP support, configure with --download-zfp) 2318 - `MAT_STRUMPACK_COMPRESSION_TYPE_LOSSY` - lossy compression (requires ZFP support, configure with --download-zfp) 2319 2320 Level: intermediate 2321 2322 .seealso: `Mat`, `MATSOLVERSTRUMPACK`, `MatGetFactor()`, `MatSTRUMPACKSetCompression()` 2323 E*/ 2324 typedef enum { 2325 MAT_STRUMPACK_COMPRESSION_TYPE_NONE, 2326 MAT_STRUMPACK_COMPRESSION_TYPE_HSS, 2327 MAT_STRUMPACK_COMPRESSION_TYPE_BLR, 2328 MAT_STRUMPACK_COMPRESSION_TYPE_HODLR, 2329 MAT_STRUMPACK_COMPRESSION_TYPE_BLR_HODLR, 2330 MAT_STRUMPACK_COMPRESSION_TYPE_ZFP_BLR_HODLR, 2331 MAT_STRUMPACK_COMPRESSION_TYPE_LOSSLESS, 2332 MAT_STRUMPACK_COMPRESSION_TYPE_LOSSY 2333 } MatSTRUMPACKCompressionType; 2334 2335 PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetCompression(Mat, MatSTRUMPACKCompressionType); 2336 PETSC_EXTERN PetscErrorCode MatSTRUMPACKGetCompression(Mat, MatSTRUMPACKCompressionType *); 2337 PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetCompRelTol(Mat, PetscReal); 2338 PETSC_EXTERN PetscErrorCode MatSTRUMPACKGetCompRelTol(Mat, PetscReal *); 2339 PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetCompAbsTol(Mat, PetscReal); 2340 PETSC_EXTERN PetscErrorCode MatSTRUMPACKGetCompAbsTol(Mat, PetscReal *); 2341 PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetCompMinSepSize(Mat, PetscInt); 2342 PETSC_EXTERN PetscErrorCode MatSTRUMPACKGetCompMinSepSize(Mat, PetscInt *); 2343 PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetCompLeafSize(Mat, PetscInt); 2344 PETSC_EXTERN PetscErrorCode MatSTRUMPACKGetCompLeafSize(Mat, PetscInt *); 2345 PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetCompLossyPrecision(Mat, PetscInt); 2346 PETSC_EXTERN PetscErrorCode MatSTRUMPACKGetCompLossyPrecision(Mat, PetscInt *); 2347 PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetCompButterflyLevels(Mat, PetscInt); 2348 PETSC_EXTERN PetscErrorCode MatSTRUMPACKGetCompButterflyLevels(Mat, PetscInt *); 2349 #endif 2350 2351 PETSC_EXTERN PetscErrorCode MatBindToCPU(Mat, PetscBool); 2352 PETSC_EXTERN PetscErrorCode MatBoundToCPU(Mat, PetscBool *); 2353 PETSC_DEPRECATED_FUNCTION(3, 13, 0, "MatBindToCPU()", ) static inline PetscErrorCode MatPinToCPU(Mat A, PetscBool flg) 2354 { 2355 return MatBindToCPU(A, flg); 2356 } 2357 PETSC_EXTERN PetscErrorCode MatSetBindingPropagates(Mat, PetscBool); 2358 PETSC_EXTERN PetscErrorCode MatGetBindingPropagates(Mat, PetscBool *); 2359 2360 #ifdef PETSC_HAVE_CUDA 2361 /*E 2362 MatCUSPARSEStorageFormat - indicates the storage format for `MATAIJCUSPARSE` (GPU) 2363 matrices. 2364 2365 Values: 2366 + `MAT_CUSPARSE_CSR` - Compressed Sparse Row 2367 . `MAT_CUSPARSE_ELL` - Ellpack (requires CUDA 4.2 or later). 2368 - `MAT_CUSPARSE_HYB` - Hybrid, a combination of Ellpack and Coordinate format (requires CUDA 4.2 or later). 2369 2370 Level: intermediate 2371 2372 .seealso: [](ch_matrices), `MATAIJCUSPARSE`, `MatCUSPARSESetFormat()`, `MatCUSPARSEFormatOperation` 2373 E*/ 2374 2375 typedef enum { 2376 MAT_CUSPARSE_CSR, 2377 MAT_CUSPARSE_ELL, 2378 MAT_CUSPARSE_HYB 2379 } MatCUSPARSEStorageFormat; 2380 2381 /* these will be strings associated with enumerated type defined above */ 2382 PETSC_EXTERN const char *const MatCUSPARSEStorageFormats[]; 2383 2384 /*E 2385 MatCUSPARSEFormatOperation - indicates the operation of `MATAIJCUSPARSE` (GPU) 2386 matrices whose operation should use a particular storage format. 2387 2388 Values: 2389 + `MAT_CUSPARSE_MULT_DIAG` - sets the storage format for the diagonal matrix in the parallel MatMult 2390 . `MAT_CUSPARSE_MULT_OFFDIAG` - sets the storage format for the offdiagonal matrix in the parallel MatMult 2391 . `MAT_CUSPARSE_MULT` - sets the storage format for the entire matrix in the serial (single GPU) MatMult 2392 - `MAT_CUSPARSE_ALL` - sets the storage format for all `MATAIJCUSPARSE` (GPU) matrices 2393 2394 Level: intermediate 2395 2396 .seealso: [](ch_matrices), `MatCUSPARSESetFormat()`, `MatCUSPARSEStorageFormat` 2397 E*/ 2398 typedef enum { 2399 MAT_CUSPARSE_MULT_DIAG, 2400 MAT_CUSPARSE_MULT_OFFDIAG, 2401 MAT_CUSPARSE_MULT, 2402 MAT_CUSPARSE_ALL 2403 } MatCUSPARSEFormatOperation; 2404 2405 PETSC_EXTERN PetscErrorCode MatCreateSeqAIJCUSPARSE(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *); 2406 PETSC_EXTERN PetscErrorCode MatCreateAIJCUSPARSE(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *); 2407 PETSC_EXTERN PetscErrorCode MatCUSPARSESetFormat(Mat, MatCUSPARSEFormatOperation, MatCUSPARSEStorageFormat); 2408 PETSC_EXTERN PetscErrorCode MatCUSPARSESetUseCPUSolve(Mat, PetscBool); 2409 PETSC_EXTERN PetscErrorCode MatSeqAIJCUSPARSEGetIJ(Mat, PetscBool, const int **, const int **); 2410 PETSC_EXTERN PetscErrorCode MatSeqAIJCUSPARSERestoreIJ(Mat, PetscBool, const int **, const int **); 2411 PETSC_EXTERN PetscErrorCode MatSeqAIJCUSPARSEGetArrayRead(Mat, const PetscScalar **); 2412 PETSC_EXTERN PetscErrorCode MatSeqAIJCUSPARSERestoreArrayRead(Mat, const PetscScalar **); 2413 PETSC_EXTERN PetscErrorCode MatSeqAIJCUSPARSEGetArrayWrite(Mat, PetscScalar **); 2414 PETSC_EXTERN PetscErrorCode MatSeqAIJCUSPARSERestoreArrayWrite(Mat, PetscScalar **); 2415 PETSC_EXTERN PetscErrorCode MatSeqAIJCUSPARSEGetArray(Mat, PetscScalar **); 2416 PETSC_EXTERN PetscErrorCode MatSeqAIJCUSPARSERestoreArray(Mat, PetscScalar **); 2417 2418 PETSC_EXTERN PetscErrorCode MatCreateDenseCUDA(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscScalar[], Mat *); 2419 PETSC_EXTERN PetscErrorCode MatCreateSeqDenseCUDA(MPI_Comm, PetscInt, PetscInt, PetscScalar[], Mat *); 2420 PETSC_EXTERN PetscErrorCode MatDenseCUDAGetArrayWrite(Mat, PetscScalar **); 2421 PETSC_EXTERN PetscErrorCode MatDenseCUDAGetArrayRead(Mat, const PetscScalar **); 2422 PETSC_EXTERN PetscErrorCode MatDenseCUDAGetArray(Mat, PetscScalar **); 2423 PETSC_EXTERN PetscErrorCode MatDenseCUDARestoreArrayWrite(Mat, PetscScalar **); 2424 PETSC_EXTERN PetscErrorCode MatDenseCUDARestoreArrayRead(Mat, const PetscScalar **); 2425 PETSC_EXTERN PetscErrorCode MatDenseCUDARestoreArray(Mat, PetscScalar **); 2426 PETSC_EXTERN PetscErrorCode MatDenseCUDAPlaceArray(Mat, const PetscScalar *); 2427 PETSC_EXTERN PetscErrorCode MatDenseCUDAReplaceArray(Mat, const PetscScalar *); 2428 PETSC_EXTERN PetscErrorCode MatDenseCUDAResetArray(Mat); 2429 PETSC_EXTERN PetscErrorCode MatDenseCUDASetPreallocation(Mat, PetscScalar *); 2430 2431 PETSC_EXTERN PetscErrorCode MatCreateSeqSELLCUDA(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *); 2432 PETSC_EXTERN PetscErrorCode MatCreateSELLCUDA(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *); 2433 #endif 2434 2435 #ifdef PETSC_HAVE_HIP 2436 /*E 2437 MatHIPSPARSEStorageFormat - indicates the storage format for `MATAIJHIPSPARSE` (GPU) 2438 matrices. 2439 2440 Values: 2441 + `MAT_HIPSPARSE_CSR` - Compressed Sparse Row 2442 . `MAT_HIPSPARSE_ELL` - Ellpack 2443 - `MAT_HIPSPARSE_HYB` - Hybrid, a combination of Ellpack and Coordinate format 2444 2445 Level: intermediate 2446 2447 .seealso: [](ch_matrices), `MatHIPSPARSESetFormat()`, `MatHIPSPARSEFormatOperation` 2448 E*/ 2449 2450 typedef enum { 2451 MAT_HIPSPARSE_CSR, 2452 MAT_HIPSPARSE_ELL, 2453 MAT_HIPSPARSE_HYB 2454 } MatHIPSPARSEStorageFormat; 2455 2456 /* these will be strings associated with enumerated type defined above */ 2457 PETSC_EXTERN const char *const MatHIPSPARSEStorageFormats[]; 2458 2459 /*E 2460 MatHIPSPARSEFormatOperation - indicates the operation of `MATAIJHIPSPARSE` (GPU) 2461 matrices whose operation should use a particular storage format. 2462 2463 Values: 2464 + `MAT_HIPSPARSE_MULT_DIAG` - sets the storage format for the diagonal matrix in the parallel `MatMult()` 2465 . `MAT_HIPSPARSE_MULT_OFFDIAG` - sets the storage format for the offdiagonal matrix in the parallel `MatMult()` 2466 . `MAT_HIPSPARSE_MULT` - sets the storage format for the entire matrix in the serial (single GPU) `MatMult()` 2467 - `MAT_HIPSPARSE_ALL` - sets the storage format for all HIPSPARSE (GPU) matrices 2468 2469 Level: intermediate 2470 2471 .seealso: [](ch_matrices), `MatHIPSPARSESetFormat()`, `MatHIPSPARSEStorageFormat` 2472 E*/ 2473 typedef enum { 2474 MAT_HIPSPARSE_MULT_DIAG, 2475 MAT_HIPSPARSE_MULT_OFFDIAG, 2476 MAT_HIPSPARSE_MULT, 2477 MAT_HIPSPARSE_ALL 2478 } MatHIPSPARSEFormatOperation; 2479 2480 PETSC_EXTERN PetscErrorCode MatCreateSeqAIJHIPSPARSE(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *); 2481 PETSC_EXTERN PetscErrorCode MatCreateAIJHIPSPARSE(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *); 2482 PETSC_EXTERN PetscErrorCode MatHIPSPARSESetFormat(Mat, MatHIPSPARSEFormatOperation, MatHIPSPARSEStorageFormat); 2483 PETSC_EXTERN PetscErrorCode MatHIPSPARSESetUseCPUSolve(Mat, PetscBool); 2484 PETSC_EXTERN PetscErrorCode MatSeqAIJHIPSPARSEGetIJ(Mat, PetscBool, const int **, const int **); 2485 PETSC_EXTERN PetscErrorCode MatSeqAIJHIPSPARSERestoreIJ(Mat, PetscBool, const int **, const int **); 2486 PETSC_EXTERN PetscErrorCode MatSeqAIJHIPSPARSEGetArrayRead(Mat, const PetscScalar **); 2487 PETSC_EXTERN PetscErrorCode MatSeqAIJHIPSPARSERestoreArrayRead(Mat, const PetscScalar **); 2488 PETSC_EXTERN PetscErrorCode MatSeqAIJHIPSPARSEGetArrayWrite(Mat, PetscScalar **); 2489 PETSC_EXTERN PetscErrorCode MatSeqAIJHIPSPARSERestoreArrayWrite(Mat, PetscScalar **); 2490 PETSC_EXTERN PetscErrorCode MatSeqAIJHIPSPARSEGetArray(Mat, PetscScalar **); 2491 PETSC_EXTERN PetscErrorCode MatSeqAIJHIPSPARSERestoreArray(Mat, PetscScalar **); 2492 2493 PETSC_EXTERN PetscErrorCode MatCreateDenseHIP(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscScalar[], Mat *); 2494 PETSC_EXTERN PetscErrorCode MatCreateSeqDenseHIP(MPI_Comm, PetscInt, PetscInt, PetscScalar[], Mat *); 2495 PETSC_EXTERN PetscErrorCode MatDenseHIPGetArrayWrite(Mat, PetscScalar **); 2496 PETSC_EXTERN PetscErrorCode MatDenseHIPGetArrayRead(Mat, const PetscScalar **); 2497 PETSC_EXTERN PetscErrorCode MatDenseHIPGetArray(Mat, PetscScalar **); 2498 PETSC_EXTERN PetscErrorCode MatDenseHIPRestoreArrayWrite(Mat, PetscScalar **); 2499 PETSC_EXTERN PetscErrorCode MatDenseHIPRestoreArrayRead(Mat, const PetscScalar **); 2500 PETSC_EXTERN PetscErrorCode MatDenseHIPRestoreArray(Mat, PetscScalar **); 2501 PETSC_EXTERN PetscErrorCode MatDenseHIPPlaceArray(Mat, const PetscScalar *); 2502 PETSC_EXTERN PetscErrorCode MatDenseHIPReplaceArray(Mat, const PetscScalar *); 2503 PETSC_EXTERN PetscErrorCode MatDenseHIPResetArray(Mat); 2504 PETSC_EXTERN PetscErrorCode MatDenseHIPSetPreallocation(Mat, PetscScalar *); 2505 #endif 2506 2507 #if defined(PETSC_HAVE_VIENNACL) 2508 PETSC_EXTERN PetscErrorCode MatCreateSeqAIJViennaCL(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *); 2509 PETSC_EXTERN PetscErrorCode MatCreateAIJViennaCL(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *); 2510 #endif 2511 2512 #if PetscDefined(HAVE_KOKKOS) 2513 PETSC_EXTERN PetscErrorCode MatCreateAIJKokkos(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *); 2514 PETSC_EXTERN PetscErrorCode MatCreateSeqAIJKokkos(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *); 2515 #endif 2516 2517 #if defined(PETSC_HAVE_FFTW) 2518 PETSC_EXTERN PetscErrorCode VecScatterPetscToFFTW(Mat, Vec, Vec); 2519 PETSC_EXTERN PetscErrorCode VecScatterFFTWToPetsc(Mat, Vec, Vec); 2520 PETSC_EXTERN PetscErrorCode MatCreateVecsFFTW(Mat, Vec *, Vec *, Vec *); 2521 #endif 2522 2523 #if defined(PETSC_HAVE_SCALAPACK) 2524 PETSC_EXTERN PetscErrorCode MatCreateScaLAPACK(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, Mat *); 2525 PETSC_EXTERN PetscErrorCode MatScaLAPACKSetBlockSizes(Mat, PetscInt, PetscInt); 2526 PETSC_EXTERN PetscErrorCode MatScaLAPACKGetBlockSizes(Mat, PetscInt *, PetscInt *); 2527 #endif 2528 2529 PETSC_EXTERN PetscErrorCode MatCreateNest(MPI_Comm, PetscInt, const IS[], PetscInt, const IS[], const Mat[], Mat *); 2530 PETSC_EXTERN PetscErrorCode MatNestGetSize(Mat, PetscInt *, PetscInt *); 2531 PETSC_EXTERN PetscErrorCode MatNestGetISs(Mat, IS[], IS[]); 2532 PETSC_EXTERN PetscErrorCode MatNestGetLocalISs(Mat, IS[], IS[]); 2533 PETSC_EXTERN PetscErrorCode MatNestGetSubMats(Mat, PetscInt *, PetscInt *, Mat ***); 2534 PETSC_EXTERN PetscErrorCode MatNestGetSubMat(Mat, PetscInt, PetscInt, Mat *); 2535 PETSC_EXTERN PetscErrorCode MatNestSetVecType(Mat, VecType); 2536 PETSC_EXTERN PetscErrorCode MatNestSetSubMats(Mat, PetscInt, const IS[], PetscInt, const IS[], const Mat[]); 2537 PETSC_EXTERN PetscErrorCode MatNestSetSubMat(Mat, PetscInt, PetscInt, Mat); 2538 2539 PETSC_EXTERN PetscErrorCode MatFilter(Mat, PetscReal, PetscBool, PetscBool); 2540 PETSC_DEPRECATED_FUNCTION(3, 20, 0, "MatFilter()", ) static inline PetscErrorCode MatChop(Mat A, PetscReal tol) 2541 { 2542 return MatFilter(A, tol, PETSC_FALSE, PETSC_FALSE); 2543 } 2544 PETSC_EXTERN PetscErrorCode MatComputeBandwidth(Mat, PetscReal, PetscInt *); 2545 2546 PETSC_EXTERN PetscErrorCode MatSubdomainsCreateCoalesce(Mat, PetscInt, PetscInt *, IS **); 2547 2548 PETSC_EXTERN PetscErrorCode MatPreallocatorPreallocate(Mat, PetscBool, Mat); 2549 2550 PETSC_INTERN PetscErrorCode MatHeaderMerge(Mat, Mat *); 2551 PETSC_EXTERN PetscErrorCode MatHeaderReplace(Mat, Mat *); 2552 2553 PETSC_EXTERN PetscErrorCode MatSeqAIJGetCSRAndMemType(Mat, const PetscInt **, const PetscInt **, PetscScalar **, PetscMemType *); 2554 2555 PETSC_EXTERN PetscErrorCode MatCreateGraph(Mat, PetscBool, PetscBool, PetscReal, Mat *); 2556 PETSC_EXTERN PetscErrorCode MatEliminateZeros(Mat, PetscBool); 2557 2558 PETSC_EXTERN PetscErrorCode MatCreateDenseFromVecType(MPI_Comm, VecType, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, PetscScalar *, Mat *); 2559