1 /* 2 Include file for the matrix component of PETSc 3 */ 4 #ifndef __PETSCMAT_H 5 #define __PETSCMAT_H 6 #include "petscvec.h" 7 PETSC_EXTERN_CXX_BEGIN 8 9 /*S 10 Mat - Abstract PETSc matrix object 11 12 Level: beginner 13 14 Concepts: matrix; linear operator 15 16 .seealso: MatCreate(), MatType, MatSetType() 17 S*/ 18 typedef struct _p_Mat* Mat; 19 20 /*E 21 MatType - String with the name of a PETSc matrix or the creation function 22 with an optional dynamic library name, for example 23 http://www.mcs.anl.gov/petsc/lib.a:mymatcreate() 24 25 Level: beginner 26 27 .seealso: MatSetType(), Mat, MatSolverPackage 28 E*/ 29 #define MatType char* 30 #define MATSAME "same" 31 #define MATSEQMAIJ "seqmaij" 32 #define MATMPIMAIJ "mpimaij" 33 #define MATMAIJ "maij" 34 #define MATIS "is" 35 #define MATMPIROWBS "mpirowbs" 36 #define MATSEQAIJ "seqaij" 37 #define MATMPIAIJ "mpiaij" 38 #define MATAIJ "aij" 39 #define MATSHELL "shell" 40 #define MATSEQDENSE "seqdense" 41 #define MATMPIDENSE "mpidense" 42 #define MATDENSE "dense" 43 #define MATSEQBAIJ "seqbaij" 44 #define MATMPIBAIJ "mpibaij" 45 #define MATBAIJ "baij" 46 #define MATMPIADJ "mpiadj" 47 #define MATSEQSBAIJ "seqsbaij" 48 #define MATMPISBAIJ "mpisbaij" 49 #define MATSBAIJ "sbaij" 50 #define MATDAAD "daad" 51 #define MATMFFD "mffd" 52 #define MATNORMAL "normal" 53 #define MATLRC "lrc" 54 #define MATSEQCSRPERM "seqcsrperm" 55 #define MATMPICSRPERM "mpicsrperm" 56 #define MATCSRPERM "csrperm" 57 #define MATSEQCRL "seqcrl" 58 #define MATMPICRL "mpicrl" 59 #define MATCRL "crl" 60 #define MATSCATTER "scatter" 61 #define MATBLOCKMAT "blockmat" 62 #define MATCOMPOSITE "composite" 63 #define MATSEQFFTW "seqfftw" 64 #define MATTRANSPOSEMAT "transpose" 65 #define MATSCHURCOMPLEMENT "schurcomplement" 66 67 /*E 68 MatSolverPackage - String with the name of a PETSc matrix solver type. 69 70 For example: "petsc" indicates what PETSc provides, "superlu" indicates either 71 SuperLU or SuperLU_Dist etc. 72 73 74 Level: beginner 75 76 .seealso: MatGetFactor(), Mat, MatSetType(), MatType 77 E*/ 78 #define MatSolverPackage char* 79 #define MAT_SOLVER_SPOOLES "spooles" 80 #define MAT_SOLVER_SUPERLU "superlu" 81 #define MAT_SOLVER_SUPERLU_DIST "superlu_dist" 82 #define MAT_SOLVER_UMFPACK "umfpack" 83 #define MAT_SOLVER_ESSL "essl" 84 #define MAT_SOLVER_LUSOL "lusol" 85 #define MAT_SOLVER_MUMPS "mumps" 86 #define MAT_SOLVER_DSCPACK "dscpack" 87 #define MAT_SOLVER_MATLAB "matlab" 88 #define MAT_SOLVER_PETSC "petsc" 89 90 /*E 91 MatFactorType - indicates what type of factorization is requested 92 93 Level: beginner 94 95 Any additions/changes here MUST also be made in include/finclude/petscmat.h 96 97 .seealso: MatSolverPackage, MatGetFactor() 98 E*/ 99 typedef enum {MAT_FACTOR_NONE, MAT_FACTOR_LU, MAT_FACTOR_CHOLESKY, MAT_FACTOR_ILU, MAT_FACTOR_ICC} MatFactorType; 100 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatGetFactor(Mat,const MatSolverPackage,MatFactorType,Mat*); 101 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatGetFactorAvailable(Mat,const MatSolverPackage,MatFactorType,PetscTruth*); 102 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatFactorGetSolverPackage(Mat,const MatSolverPackage*); 103 104 105 /* Logging support */ 106 #define MAT_FILE_COOKIE 1211216 /* used to indicate matrices in binary files */ 107 extern PetscCookie PETSCMAT_DLLEXPORT MAT_COOKIE; 108 extern PetscCookie PETSCMAT_DLLEXPORT MAT_FDCOLORING_COOKIE; 109 extern PetscCookie PETSCMAT_DLLEXPORT MAT_PARTITIONING_COOKIE; 110 extern PetscCookie PETSCMAT_DLLEXPORT MAT_NULLSPACE_COOKIE; 111 extern PetscCookie PETSCMAT_DLLEXPORT MATMFFD_COOKIE; 112 113 /*E 114 MatReuse - Indicates if matrices obtained from a previous call to MatGetSubMatrices() 115 or MatGetSubMatrix() are to be reused to store the new matrix values. 116 117 Level: beginner 118 119 Any additions/changes here MUST also be made in include/finclude/petscmat.h 120 121 .seealso: MatGetSubMatrices(), MatGetSubMatrix(), MatDestroyMatrices(), MatConvert() 122 E*/ 123 typedef enum {MAT_INITIAL_MATRIX,MAT_REUSE_MATRIX} MatReuse; 124 125 /*E 126 MatGetSubMatrixOption - Indicates if matrices obtained from a call to MatGetSubMatrices() 127 include the matrix values. Currently it is only used by MatGetSeqNonzerostructure(). 128 129 Level: beginner 130 131 .seealso: MatGetSeqNonzerostructure() 132 E*/ 133 typedef enum {MAT_DO_NOT_GET_VALUES,MAT_GET_VALUES} MatGetSubMatrixOption; 134 135 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatInitializePackage(const char[]); 136 137 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatCreate(MPI_Comm,Mat*); 138 PetscPolymorphicFunction(MatCreate,(MPI_Comm comm),(comm,&A),Mat,A) 139 PetscPolymorphicFunction(MatCreate,(),(PETSC_COMM_WORLD,&A),Mat,A) 140 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatSetSizes(Mat,PetscInt,PetscInt,PetscInt,PetscInt); 141 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatSetType(Mat,const MatType); 142 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatSetFromOptions(Mat); 143 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatSetUpPreallocation(Mat); 144 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatRegisterAll(const char[]); 145 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatRegister(const char[],const char[],const char[],PetscErrorCode(*)(Mat)); 146 147 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatSetOptionsPrefix(Mat,const char[]); 148 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatAppendOptionsPrefix(Mat,const char[]); 149 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatGetOptionsPrefix(Mat,const char*[]); 150 151 /*MC 152 MatRegisterDynamic - Adds a new matrix type 153 154 Synopsis: 155 PetscErrorCode MatRegisterDynamic(char *name,char *path,char *name_create,PetscErrorCode (*routine_create)(Mat)) 156 157 Not Collective 158 159 Input Parameters: 160 + name - name of a new user-defined matrix type 161 . path - path (either absolute or relative) the library containing this solver 162 . name_create - name of routine to create method context 163 - routine_create - routine to create method context 164 165 Notes: 166 MatRegisterDynamic() may be called multiple times to add several user-defined solvers. 167 168 If dynamic libraries are used, then the fourth input argument (routine_create) 169 is ignored. 170 171 Sample usage: 172 .vb 173 MatRegisterDynamic("my_mat",/home/username/my_lib/lib/libO/solaris/mylib.a, 174 "MyMatCreate",MyMatCreate); 175 .ve 176 177 Then, your solver can be chosen with the procedural interface via 178 $ MatSetType(Mat,"my_mat") 179 or at runtime via the option 180 $ -mat_type my_mat 181 182 Level: advanced 183 184 Notes: ${PETSC_ARCH} occuring in pathname will be replaced with appropriate values. 185 If your function is not being put into a shared library then use VecRegister() instead 186 187 .keywords: Mat, register 188 189 .seealso: MatRegisterAll(), MatRegisterDestroy() 190 191 M*/ 192 #if defined(PETSC_USE_DYNAMIC_LIBRARIES) 193 #define MatRegisterDynamic(a,b,c,d) MatRegister(a,b,c,0) 194 #else 195 #define MatRegisterDynamic(a,b,c,d) MatRegister(a,b,c,d) 196 #endif 197 198 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatRegisterAll(const char[]); 199 extern PetscTruth MatRegisterAllCalled; 200 extern PetscFList MatList; 201 202 /*E 203 MatStructure - Indicates if the matrix has the same nonzero structure 204 205 Level: beginner 206 207 Any additions/changes here MUST also be made in include/finclude/petscmat.h 208 209 .seealso: MatCopy(), KSPSetOperators(), PCSetOperators() 210 E*/ 211 typedef enum {SAME_NONZERO_PATTERN,DIFFERENT_NONZERO_PATTERN,SAME_PRECONDITIONER,SUBSET_NONZERO_PATTERN} MatStructure; 212 213 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatCreateSeqDense(MPI_Comm,PetscInt,PetscInt,PetscScalar[],Mat*); 214 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatCreateMPIDense(MPI_Comm,PetscInt,PetscInt,PetscInt,PetscInt,PetscScalar[],Mat*); 215 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatCreateSeqAIJ(MPI_Comm,PetscInt,PetscInt,PetscInt,const PetscInt[],Mat*); 216 PetscPolymorphicFunction(MatCreateSeqAIJ,(PetscInt m,PetscInt n,PetscInt nz,const PetscInt nnz[]),(PETSC_COMM_SELF,m,n,nz,nnz,&A),Mat,A) 217 PetscPolymorphicFunction(MatCreateSeqAIJ,(PetscInt m,PetscInt n,PetscInt nz),(PETSC_COMM_SELF,m,n,nz,PETSC_NULL,&A),Mat,A) 218 PetscPolymorphicFunction(MatCreateSeqAIJ,(PetscInt m,PetscInt n,const PetscInt nnz[]),(PETSC_COMM_SELF,m,n,0,nnz,&A),Mat,A) 219 PetscPolymorphicFunction(MatCreateSeqAIJ,(PetscInt m,PetscInt n),(PETSC_COMM_SELF,m,n,0,PETSC_NULL,&A),Mat,A) 220 PetscPolymorphicSubroutine(MatCreateSeqAIJ,(PetscInt m,PetscInt n,PetscInt nz,Mat *A),(PETSC_COMM_SELF,m,n,nz,PETSC_NULL,A)) 221 PetscPolymorphicSubroutine(MatCreateSeqAIJ,(PetscInt m,PetscInt n,const PetscInt nnz[],Mat *A),(PETSC_COMM_SELF,m,n,0,nnz,A)) 222 PetscPolymorphicSubroutine(MatCreateSeqAIJ,(PetscInt m,PetscInt n,Mat *A),(PETSC_COMM_SELF,m,n,0,PETSC_NULL,A)) 223 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatCreateMPIAIJ(MPI_Comm,PetscInt,PetscInt,PetscInt,PetscInt,PetscInt,const PetscInt[],PetscInt,const PetscInt[],Mat*); 224 PetscPolymorphicFunction(MatCreateMPIAIJ,(MPI_Comm comm,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscInt nz,const PetscInt nnz[],PetscInt onz,const PetscInt onnz[]),(comm,m,n,M,N,nz,nnz,onz,onnz,&A),Mat,A) 225 PetscPolymorphicFunction(MatCreateMPIAIJ,(MPI_Comm comm,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscInt nz,PetscInt nnz),(comm,m,n,M,N,nz,PETSC_NULL,nnz,PETSC_NULL,&A),Mat,A) 226 PetscPolymorphicFunction(MatCreateMPIAIJ,(MPI_Comm comm,PetscInt m,PetscInt n,PetscInt M,PetscInt N,const PetscInt nnz[],const PetscInt onz[]),(comm,m,n,M,N,0,nnz,0,onz,&A),Mat,A) 227 PetscPolymorphicFunction(MatCreateMPIAIJ,(MPI_Comm comm,PetscInt m,PetscInt n,PetscInt M,PetscInt N),(comm,m,n,M,N,0,PETSC_NULL,0,PETSC_NULL,&A),Mat,A) 228 PetscPolymorphicSubroutine(MatCreateMPIAIJ,(MPI_Comm comm,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscInt nz,PetscInt nnz,Mat *A),(comm,m,n,M,N,nz,PETSC_NULL,nnz,PETSC_NULL,A)) 229 PetscPolymorphicSubroutine(MatCreateMPIAIJ,(MPI_Comm comm,PetscInt m,PetscInt n,PetscInt M,PetscInt N,const PetscInt nnz[],const PetscInt onz[],Mat *A),(comm,m,n,M,N,0,nnz,0,onz,A)) 230 PetscPolymorphicSubroutine(MatCreateMPIAIJ,(MPI_Comm comm,PetscInt m,PetscInt n,PetscInt M,PetscInt N,Mat *A),(comm,m,n,M,N,0,PETSC_NULL,0,PETSC_NULL,A)) 231 PetscPolymorphicFunction(MatCreateMPIAIJ,(PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscInt nz,const PetscInt nnz[],PetscInt onz,const PetscInt onnz[]),(PETSC_COMM_WORLD,m,n,M,N,nz,nnz,onz,onnz,&A),Mat,A) 232 PetscPolymorphicFunction(MatCreateMPIAIJ,(PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscInt nz,PetscInt nnz),(PETSC_COMM_WORLD,m,n,M,N,nz,PETSC_NULL,nnz,PETSC_NULL,&A),Mat,A) 233 PetscPolymorphicFunction(MatCreateMPIAIJ,(PetscInt m,PetscInt n,PetscInt M,PetscInt N,const PetscInt nnz[],const PetscInt onz[]),(PETSC_COMM_WORLD,m,n,M,N,0,nnz,0,onz,&A),Mat,A) 234 PetscPolymorphicFunction(MatCreateMPIAIJ,(PetscInt m,PetscInt n,PetscInt M,PetscInt N),(PETSC_COMM_WORLD,m,n,M,N,0,PETSC_NULL,0,PETSC_NULL,&A),Mat,A) 235 PetscPolymorphicSubroutine(MatCreateMPIAIJ,(PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscInt nz,PetscInt nnz,Mat *A),(PETSC_COMM_WORLD,m,n,M,N,nz,PETSC_NULL,nnz,PETSC_NULL,A)) 236 PetscPolymorphicSubroutine(MatCreateMPIAIJ,(PetscInt m,PetscInt n,PetscInt M,PetscInt N,const PetscInt nnz[],const PetscInt onz[],Mat *A),(PETSC_COMM_WORLD,m,n,M,N,0,nnz,0,onz,A)) 237 PetscPolymorphicSubroutine(MatCreateMPIAIJ,(PetscInt m,PetscInt n,PetscInt M,PetscInt N,Mat *A),(PETSC_COMM_WORLD,m,n,M,N,0,PETSC_NULL,0,PETSC_NULL,A)) 238 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatCreateMPIAIJWithArrays(MPI_Comm,PetscInt,PetscInt,PetscInt,PetscInt,const PetscInt[],const PetscInt[],const PetscScalar[],Mat *); 239 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatCreateMPIAIJWithSplitArrays(MPI_Comm,PetscInt,PetscInt,PetscInt,PetscInt,PetscInt[],PetscInt[],PetscScalar[],PetscInt[],PetscInt[],PetscScalar[],Mat*); 240 241 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatCreateMPIRowbs(MPI_Comm,PetscInt,PetscInt,PetscInt,const PetscInt[],Mat*); 242 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatCreateSeqBAIJ(MPI_Comm,PetscInt,PetscInt,PetscInt,PetscInt,const PetscInt[],Mat*); 243 PetscPolymorphicFunction(MatCreateSeqBAIJ,(PetscInt bs,PetscInt m,PetscInt n,PetscInt nz,const PetscInt nnz[]),(PETSC_COMM_SELF,bs,m,n,nz,nnz,&A),Mat,A) 244 PetscPolymorphicFunction(MatCreateSeqBAIJ,(PetscInt bs,PetscInt m,PetscInt n,PetscInt nz),(PETSC_COMM_SELF,bs,m,n,nz,PETSC_NULL,&A),Mat,A) 245 PetscPolymorphicFunction(MatCreateSeqBAIJ,(PetscInt bs,PetscInt m,PetscInt n,const PetscInt nnz[]),(PETSC_COMM_SELF,bs,m,n,0,nnz,&A),Mat,A) 246 PetscPolymorphicFunction(MatCreateSeqBAIJ,(PetscInt bs,PetscInt m,PetscInt n),(PETSC_COMM_SELF,bs,m,n,0,PETSC_NULL,&A),Mat,A) 247 PetscPolymorphicSubroutine(MatCreateSeqBAIJ,(PetscInt bs,PetscInt m,PetscInt n,PetscInt nz,Mat *A),(PETSC_COMM_SELF,bs,m,n,nz,PETSC_NULL,A)) 248 PetscPolymorphicSubroutine(MatCreateSeqBAIJ,(PetscInt bs,PetscInt m,PetscInt n,const PetscInt nnz[],Mat *A),(PETSC_COMM_SELF,bs,m,n,0,nnz,A)) 249 PetscPolymorphicSubroutine(MatCreateSeqBAIJ,(PetscInt bs,PetscInt m,PetscInt n,Mat *A),(PETSC_COMM_SELF,bs,m,n,0,PETSC_NULL,A)) 250 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatCreateMPIBAIJ(MPI_Comm,PetscInt,PetscInt,PetscInt,PetscInt,PetscInt,PetscInt,const PetscInt[],PetscInt,const PetscInt[],Mat*); 251 PetscPolymorphicFunction(MatCreateMPIBAIJ,(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscInt nz,const PetscInt nnz[],PetscInt onz,const PetscInt onnz[]),(comm,bs,m,n,M,N,nz,nnz,onz,onnz,&A),Mat,A) 252 PetscPolymorphicFunction(MatCreateMPIBAIJ,(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscInt nz,PetscInt nnz),(comm,bs,m,n,M,N,nz,PETSC_NULL,nnz,PETSC_NULL,&A),Mat,A) 253 PetscPolymorphicFunction(MatCreateMPIBAIJ,(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,const PetscInt nnz[],const PetscInt onz[]),(comm,bs,m,n,M,N,0,nnz,0,onz,&A),Mat,A) 254 PetscPolymorphicFunction(MatCreateMPIBAIJ,(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N),(comm,bs,m,n,M,N,0,PETSC_NULL,0,PETSC_NULL,&A),Mat,A) 255 PetscPolymorphicSubroutine(MatCreateMPIBAIJ,(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscInt nz,PetscInt nnz,Mat *A),(comm,bs,m,n,M,N,nz,PETSC_NULL,nnz,PETSC_NULL,A)) 256 PetscPolymorphicSubroutine(MatCreateMPIBAIJ,(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,const PetscInt nnz[],const PetscInt onz[],Mat *A),(comm,bs,m,n,M,N,0,nnz,0,onz,A)) 257 PetscPolymorphicSubroutine(MatCreateMPIBAIJ,(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,Mat *A),(comm,bs,m,n,M,N,0,PETSC_NULL,0,PETSC_NULL,A)) 258 PetscPolymorphicFunction(MatCreateMPIBAIJ,(PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscInt nz,const PetscInt nnz[],PetscInt onz,const PetscInt onnz[]),(PETSC_COMM_WORLD,bs,m,n,M,N,nz,nnz,onz,onnz,&A),Mat,A) 259 PetscPolymorphicFunction(MatCreateMPIBAIJ,(PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscInt nz,PetscInt nnz),(PETSC_COMM_WORLD,bs,m,n,M,N,nz,PETSC_NULL,nnz,PETSC_NULL,&A),Mat,A) 260 PetscPolymorphicFunction(MatCreateMPIBAIJ,(PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,const PetscInt nnz[],const PetscInt onz[]),(PETSC_COMM_WORLD,bs,m,n,M,N,0,nnz,0,onz,&A),Mat,A) 261 PetscPolymorphicFunction(MatCreateMPIBAIJ,(PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N),(PETSC_COMM_WORLD,bs,m,n,M,N,0,PETSC_NULL,0,PETSC_NULL,&A),Mat,A) 262 PetscPolymorphicSubroutine(MatCreateMPIBAIJ,(PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscInt nz,PetscInt nnz,Mat *A),(PETSC_COMM_WORLD,bs,m,n,M,N,nz,PETSC_NULL,nnz,PETSC_NULL,A)) 263 PetscPolymorphicSubroutine(MatCreateMPIBAIJ,(PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,const PetscInt nnz[],const PetscInt onz[],Mat *A),(PETSC_COMM_WORLD,bs,m,n,M,N,0,nnz,0,onz,A)) 264 PetscPolymorphicSubroutine(MatCreateMPIBAIJ,(PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,Mat *A),(PETSC_COMM_WORLD,bs,m,n,M,N,0,PETSC_NULL,0,PETSC_NULL,A)) 265 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatCreateMPIAdj(MPI_Comm,PetscInt,PetscInt,PetscInt[],PetscInt[],PetscInt[],Mat*); 266 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatCreateSeqSBAIJ(MPI_Comm,PetscInt,PetscInt,PetscInt,PetscInt,const PetscInt[],Mat*); 267 PetscPolymorphicFunction(MatCreateSeqSBAIJ,(PetscInt bs,PetscInt m,PetscInt n,PetscInt nz,const PetscInt nnz[]),(PETSC_COMM_SELF,bs,m,n,nz,nnz,&A),Mat,A) 268 PetscPolymorphicFunction(MatCreateSeqSBAIJ,(PetscInt bs,PetscInt m,PetscInt n,PetscInt nz),(PETSC_COMM_SELF,bs,m,n,nz,PETSC_NULL,&A),Mat,A) 269 PetscPolymorphicFunction(MatCreateSeqSBAIJ,(PetscInt bs,PetscInt m,PetscInt n,const PetscInt nnz[]),(PETSC_COMM_SELF,bs,m,n,0,nnz,&A),Mat,A) 270 PetscPolymorphicFunction(MatCreateSeqSBAIJ,(PetscInt bs,PetscInt m,PetscInt n),(PETSC_COMM_SELF,bs,m,n,0,PETSC_NULL,&A),Mat,A) 271 PetscPolymorphicSubroutine(MatCreateSeqSBAIJ,(PetscInt bs,PetscInt m,PetscInt n,PetscInt nz,Mat *A),(PETSC_COMM_SELF,bs,m,n,nz,PETSC_NULL,A)) 272 PetscPolymorphicSubroutine(MatCreateSeqSBAIJ,(PetscInt bs,PetscInt m,PetscInt n,const PetscInt nnz[],Mat *A),(PETSC_COMM_SELF,bs,m,n,0,nnz,A)) 273 PetscPolymorphicSubroutine(MatCreateSeqSBAIJ,(PetscInt bs,PetscInt m,PetscInt n,Mat *A),(PETSC_COMM_SELF,bs,m,n,0,PETSC_NULL,A)) 274 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatCreateMPISBAIJ(MPI_Comm,PetscInt,PetscInt,PetscInt,PetscInt,PetscInt,PetscInt,const PetscInt[],PetscInt,const PetscInt[],Mat*); 275 PetscPolymorphicFunction(MatCreateMPISBAIJ,(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscInt nz,const PetscInt nnz[],PetscInt onz,const PetscInt onnz[]),(comm,bs,m,n,M,N,nz,nnz,onz,onnz,&A),Mat,A) 276 PetscPolymorphicFunction(MatCreateMPISBAIJ,(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscInt nz,PetscInt nnz),(comm,bs,m,n,M,N,nz,PETSC_NULL,nnz,PETSC_NULL,&A),Mat,A) 277 PetscPolymorphicFunction(MatCreateMPISBAIJ,(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,const PetscInt nnz[],const PetscInt onz[]),(comm,bs,m,n,M,N,0,nnz,0,onz,&A),Mat,A) 278 PetscPolymorphicFunction(MatCreateMPISBAIJ,(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N),(comm,bs,m,n,M,N,0,PETSC_NULL,0,PETSC_NULL,&A),Mat,A) 279 PetscPolymorphicSubroutine(MatCreateMPISBAIJ,(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscInt nz,PetscInt nnz,Mat *A),(comm,bs,m,n,M,N,nz,PETSC_NULL,nnz,PETSC_NULL,A)) 280 PetscPolymorphicSubroutine(MatCreateMPISBAIJ,(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,const PetscInt nnz[],const PetscInt onz[],Mat *A),(comm,bs,m,n,M,N,0,nnz,0,onz,A)) 281 PetscPolymorphicSubroutine(MatCreateMPISBAIJ,(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,Mat *A),(comm,bs,m,n,M,N,0,PETSC_NULL,0,PETSC_NULL,A)) 282 PetscPolymorphicFunction(MatCreateMPISBAIJ,(PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscInt nz,const PetscInt nnz[],PetscInt onz,const PetscInt onnz[]),(PETSC_COMM_WORLD,bs,m,n,M,N,nz,nnz,onz,onnz,&A),Mat,A) 283 PetscPolymorphicFunction(MatCreateMPISBAIJ,(PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscInt nz,PetscInt nnz),(PETSC_COMM_WORLD,bs,m,n,M,N,nz,PETSC_NULL,nnz,PETSC_NULL,&A),Mat,A) 284 PetscPolymorphicFunction(MatCreateMPISBAIJ,(PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,const PetscInt nnz[],const PetscInt onz[]),(PETSC_COMM_WORLD,bs,m,n,M,N,0,nnz,0,onz,&A),Mat,A) 285 PetscPolymorphicFunction(MatCreateMPISBAIJ,(PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N),(PETSC_COMM_WORLD,bs,m,n,M,N,0,PETSC_NULL,0,PETSC_NULL,&A),Mat,A) 286 PetscPolymorphicSubroutine(MatCreateMPISBAIJ,(PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscInt nz,PetscInt nnz,Mat *A),(PETSC_COMM_WORLD,bs,m,n,M,N,nz,PETSC_NULL,nnz,PETSC_NULL,A)) 287 PetscPolymorphicSubroutine(MatCreateMPISBAIJ,(PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,const PetscInt nnz[],const PetscInt onz[],Mat *A),(PETSC_COMM_WORLD,bs,m,n,M,N,0,nnz,0,onz,A)) 288 PetscPolymorphicSubroutine(MatCreateMPISBAIJ,(PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,Mat *A),(PETSC_COMM_WORLD,bs,m,n,M,N,0,PETSC_NULL,0,PETSC_NULL,A)) 289 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatCreateShell(MPI_Comm,PetscInt,PetscInt,PetscInt,PetscInt,void *,Mat*); 290 PetscPolymorphicFunction(MatCreateShell,(MPI_Comm comm,PetscInt m,PetscInt n,PetscInt M,PetscInt N,void *ctx),(comm,m,n,M,N,ctx,&A),Mat,A) 291 PetscPolymorphicFunction(MatCreateShell,(PetscInt m,PetscInt n,PetscInt M,PetscInt N,void *ctx),(PETSC_COMM_WORLD,m,n,M,N,ctx,&A),Mat,A) 292 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatCreateAdic(MPI_Comm,PetscInt,PetscInt,PetscInt,PetscInt,PetscInt,void (*)(void),Mat*); 293 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatCreateNormal(Mat,Mat*); 294 PetscPolymorphicFunction(MatCreateNormal,(Mat mat),(mat,&A),Mat,A) 295 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatCreateLRC(Mat,Mat,Mat,Mat*); 296 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatCreateIS(MPI_Comm,PetscInt,PetscInt,PetscInt,PetscInt,ISLocalToGlobalMapping,Mat*); 297 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatCreateSeqCRL(MPI_Comm,PetscInt,PetscInt,PetscInt,const PetscInt[],Mat*); 298 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatCreateMPICRL(MPI_Comm,PetscInt,PetscInt,PetscInt,const PetscInt[],PetscInt,const PetscInt[],Mat*); 299 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatCreateScatter(MPI_Comm,VecScatter,Mat*); 300 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatScatterSetVecScatter(Mat,VecScatter); 301 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatScatterGetVecScatter(Mat,VecScatter*); 302 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatCreateBlockMat(MPI_Comm,PetscInt,PetscInt,PetscInt,PetscInt,PetscInt*,Mat*); 303 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatCompositeAddMat(Mat,Mat); 304 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatCompositeMerge(Mat); 305 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatCreateComposite(MPI_Comm,PetscInt,const Mat*,Mat*); 306 typedef enum {MAT_COMPOSITE_ADDITIVE,MAT_COMPOSITE_MULTIPLICATIVE} MatCompositeType; 307 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatCompositeSetType(Mat,MatCompositeType); 308 309 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatCreateSeqFFTW(MPI_Comm,PetscInt,const PetscInt[],Mat*); 310 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatCreateTranspose(Mat,Mat*); 311 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatCreateSchurComplement(Mat,Mat,Mat,Mat,Mat*); 312 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatSchurComplementUpdate(Mat,Mat,Mat,Mat,Mat,MatStructure); 313 314 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatSetUp(Mat); 315 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatDestroy(Mat); 316 317 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatConjugate(Mat); 318 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatRealPart(Mat); 319 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatImaginaryPart(Mat); 320 321 /* ------------------------------------------------------------*/ 322 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatSetValues(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode); 323 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatSetValuesBlocked(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode); 324 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatSetValuesRow(Mat,PetscInt,const PetscScalar[]); 325 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatSetValuesRowLocal(Mat,PetscInt,const PetscScalar[]); 326 327 /*S 328 MatStencil - Data structure (C struct) for storing information about a single row or 329 column of a matrix as index on an associated grid. 330 331 Level: beginner 332 333 Concepts: matrix; linear operator 334 335 .seealso: MatSetValuesStencil(), MatSetStencil(), MatSetValuesBlockStencil() 336 S*/ 337 typedef struct { 338 PetscInt k,j,i,c; 339 } MatStencil; 340 341 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatSetValuesStencil(Mat,PetscInt,const MatStencil[],PetscInt,const MatStencil[],const PetscScalar[],InsertMode); 342 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatSetValuesBlockedStencil(Mat,PetscInt,const MatStencil[],PetscInt,const MatStencil[],const PetscScalar[],InsertMode); 343 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatSetStencil(Mat,PetscInt,const PetscInt[],const PetscInt[],PetscInt); 344 345 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatSetColoring(Mat,ISColoring); 346 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatSetValuesAdic(Mat,void*); 347 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatSetValuesAdifor(Mat,PetscInt,void*); 348 349 /*E 350 MatAssemblyType - Indicates if the matrix is now to be used, or if you plan 351 to continue to add values to it 352 353 Level: beginner 354 355 .seealso: MatAssemblyBegin(), MatAssemblyEnd() 356 E*/ 357 typedef enum {MAT_FLUSH_ASSEMBLY=1,MAT_FINAL_ASSEMBLY=0} MatAssemblyType; 358 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatAssemblyBegin(Mat,MatAssemblyType); 359 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatAssemblyEnd(Mat,MatAssemblyType); 360 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatAssembled(Mat,PetscTruth*); 361 362 363 364 /*E 365 MatOption - Options that may be set for a matrix and its behavior or storage 366 367 Level: beginner 368 369 Any additions/changes here MUST also be made in include/finclude/petscmat.h 370 371 .seealso: MatSetOption() 372 E*/ 373 typedef enum {MAT_ROW_ORIENTED,MAT_NEW_NONZERO_LOCATIONS, 374 MAT_SYMMETRIC, 375 MAT_STRUCTURALLY_SYMMETRIC, 376 MAT_NEW_DIAGONALS,MAT_IGNORE_OFF_PROC_ENTRIES, 377 MAT_NEW_NONZERO_LOCATION_ERR, 378 MAT_NEW_NONZERO_ALLOCATION_ERR,MAT_USE_HASH_TABLE, 379 MAT_KEEP_ZEROED_ROWS,MAT_IGNORE_ZERO_ENTRIES, 380 MAT_USE_INODES, 381 MAT_HERMITIAN, 382 MAT_SYMMETRY_ETERNAL, 383 MAT_USE_COMPRESSEDROW, 384 MAT_IGNORE_LOWER_TRIANGULAR,MAT_ERROR_LOWER_TRIANGULAR, 385 MAT_GETROW_UPPERTRIANGULAR} MatOption; 386 extern const char *MatOptions[]; 387 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatSetOption(Mat,MatOption,PetscTruth); 388 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatGetType(Mat,const MatType*); 389 PetscPolymorphicFunction(MatGetType,(Mat mat),(mat,&t),const MatType,t) 390 391 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatGetValues(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],PetscScalar[]); 392 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatGetRow(Mat,PetscInt,PetscInt *,const PetscInt *[],const PetscScalar*[]); 393 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatRestoreRow(Mat,PetscInt,PetscInt *,const PetscInt *[],const PetscScalar*[]); 394 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatGetRowUpperTriangular(Mat); 395 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatRestoreRowUpperTriangular(Mat); 396 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatGetColumn(Mat,PetscInt,PetscInt *,const PetscInt *[],const PetscScalar*[]); 397 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatRestoreColumn(Mat,PetscInt,PetscInt *,const PetscInt *[],const PetscScalar*[]); 398 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatGetColumnVector(Mat,Vec,PetscInt); 399 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatGetArray(Mat,PetscScalar *[]); 400 PetscPolymorphicFunction(MatGetArray,(Mat mat),(mat,&a),PetscScalar*,a) 401 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatRestoreArray(Mat,PetscScalar *[]); 402 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatGetBlockSize(Mat,PetscInt *); 403 PetscPolymorphicFunction(MatGetBlockSize,(Mat mat),(mat,&a),PetscInt,a) 404 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatSetBlockSize(Mat,PetscInt); 405 406 407 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatMult(Mat,Vec,Vec); 408 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatMultAdd(Mat,Vec,Vec,Vec); 409 PetscPolymorphicSubroutine(MatMultAdd,(Mat A,Vec x,Vec y),(A,x,y,y)) 410 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatMultTranspose(Mat,Vec,Vec); 411 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatIsTranspose(Mat,Mat,PetscReal,PetscTruth*); 412 PetscPolymorphicFunction(MatIsTranspose,(Mat A,Mat B,PetscReal tol),(A,B,tol,&t),PetscTruth,t) 413 PetscPolymorphicFunction(MatIsTranspose,(Mat A,Mat B),(A,B,0,&t),PetscTruth,t) 414 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatIsHermitianTranspose(Mat,Mat,PetscReal,PetscTruth*); 415 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatMultTransposeAdd(Mat,Vec,Vec,Vec); 416 PetscPolymorphicSubroutine(MatMultTransposeAdd,(Mat A,Vec x,Vec y),(A,x,y,y)) 417 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatMultConstrained(Mat,Vec,Vec); 418 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatMultTransposeConstrained(Mat,Vec,Vec); 419 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatMatSolve(Mat,Mat,Mat); 420 421 /*E 422 MatDuplicateOption - Indicates if a duplicated sparse matrix should have 423 its numerical values copied over or just its nonzero structure. 424 425 Level: beginner 426 427 Any additions/changes here MUST also be made in include/finclude/petscmat.h 428 429 .seealso: MatDuplicate() 430 E*/ 431 typedef enum {MAT_DO_NOT_COPY_VALUES,MAT_COPY_VALUES} MatDuplicateOption; 432 433 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatConvert(Mat,const MatType,MatReuse,Mat*); 434 PetscPolymorphicFunction(MatConvert,(Mat A,const MatType t),(A,t,MAT_INITIAL_MATRIX,&a),Mat,a) 435 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatDuplicate(Mat,MatDuplicateOption,Mat*); 436 PetscPolymorphicFunction(MatDuplicate,(Mat A,MatDuplicateOption o),(A,o,&a),Mat,a) 437 PetscPolymorphicFunction(MatDuplicate,(Mat A),(A,MAT_COPY_VALUES,&a),Mat,a) 438 439 440 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatCopy(Mat,Mat,MatStructure); 441 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatView(Mat,PetscViewer); 442 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatIsSymmetric(Mat,PetscReal,PetscTruth*); 443 PetscPolymorphicFunction(MatIsSymmetric,(Mat A,PetscReal tol),(A,tol,&t),PetscTruth,t) 444 PetscPolymorphicFunction(MatIsSymmetric,(Mat A),(A,0,&t),PetscTruth,t) 445 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatIsStructurallySymmetric(Mat,PetscTruth*); 446 PetscPolymorphicFunction(MatIsStructurallySymmetric,(Mat A),(A,&t),PetscTruth,t) 447 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatIsHermitian(Mat,PetscReal,PetscTruth*); 448 PetscPolymorphicFunction(MatIsHermitian,(Mat A),(A,0,&t),PetscTruth,t) 449 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatIsSymmetricKnown(Mat,PetscTruth*,PetscTruth*); 450 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatIsHermitianKnown(Mat,PetscTruth*,PetscTruth*); 451 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatMissingDiagonal(Mat,PetscTruth *,PetscInt *); 452 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatLoad(PetscViewer,const MatType,Mat*); 453 PetscPolymorphicFunction(MatLoad,(PetscViewer v,const MatType t),(v,t,&a),Mat,a) 454 455 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatGetRowIJ(Mat,PetscInt,PetscTruth,PetscTruth,PetscInt*,PetscInt *[],PetscInt *[],PetscTruth *); 456 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatRestoreRowIJ(Mat,PetscInt,PetscTruth,PetscTruth,PetscInt *,PetscInt *[],PetscInt *[],PetscTruth *); 457 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatGetColumnIJ(Mat,PetscInt,PetscTruth,PetscTruth,PetscInt*,PetscInt *[],PetscInt *[],PetscTruth *); 458 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatRestoreColumnIJ(Mat,PetscInt,PetscTruth,PetscTruth,PetscInt *,PetscInt *[],PetscInt *[],PetscTruth *); 459 460 /*S 461 MatInfo - Context of matrix information, used with MatGetInfo() 462 463 In Fortran this is simply a double precision array of dimension MAT_INFO_SIZE 464 465 Level: intermediate 466 467 Concepts: matrix^nonzero information 468 469 .seealso: MatGetInfo(), MatInfoType 470 S*/ 471 typedef struct { 472 PetscLogDouble block_size; /* block size */ 473 PetscLogDouble nz_allocated,nz_used,nz_unneeded; /* number of nonzeros */ 474 PetscLogDouble memory; /* memory allocated */ 475 PetscLogDouble assemblies; /* number of matrix assemblies called */ 476 PetscLogDouble mallocs; /* number of mallocs during MatSetValues() */ 477 PetscLogDouble fill_ratio_given,fill_ratio_needed; /* fill ratio for LU/ILU */ 478 PetscLogDouble factor_mallocs; /* number of mallocs during factorization */ 479 } MatInfo; 480 481 /*E 482 MatInfoType - Indicates if you want information about the local part of the matrix, 483 the entire parallel matrix or the maximum over all the local parts. 484 485 Level: beginner 486 487 Any additions/changes here MUST also be made in include/finclude/petscmat.h 488 489 .seealso: MatGetInfo(), MatInfo 490 E*/ 491 typedef enum {MAT_LOCAL=1,MAT_GLOBAL_MAX=2,MAT_GLOBAL_SUM=3} MatInfoType; 492 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatGetInfo(Mat,MatInfoType,MatInfo*); 493 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatValid(Mat,PetscTruth*); 494 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatGetDiagonal(Mat,Vec); 495 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatGetRowMax(Mat,Vec,PetscInt[]); 496 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatGetRowMin(Mat,Vec,PetscInt[]); 497 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatGetRowMaxAbs(Mat,Vec,PetscInt[]); 498 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatGetRowMinAbs(Mat,Vec,PetscInt[]); 499 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatGetRowSum(Mat,Vec); 500 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatTranspose(Mat,MatReuse,Mat*); 501 PetscPolymorphicFunction(MatTranspose,(Mat A),(A,MAT_INITIAL_MATRIX,&t),Mat,t) 502 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatPermute(Mat,IS,IS,Mat *); 503 PetscPolymorphicFunction(MatPermute,(Mat A,IS is1,IS is2),(A,is1,is2,&t),Mat,t) 504 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatPermuteSparsify(Mat,PetscInt,PetscReal,PetscReal,IS,IS,Mat *); 505 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatDiagonalScale(Mat,Vec,Vec); 506 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatDiagonalSet(Mat,Vec,InsertMode); 507 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatEqual(Mat,Mat,PetscTruth*); 508 PetscPolymorphicFunction(MatEqual,(Mat A,Mat B),(A,B,&t),PetscTruth,t) 509 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatMultEqual(Mat,Mat,PetscInt,PetscTruth*); 510 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatMultAddEqual(Mat,Mat,PetscInt,PetscTruth*); 511 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatMultTransposeEqual(Mat,Mat,PetscInt,PetscTruth*); 512 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatMultTransposeAddEqual(Mat,Mat,PetscInt,PetscTruth*); 513 514 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatNorm(Mat,NormType,PetscReal *); 515 PetscPolymorphicFunction(MatNorm,(Mat A,NormType t),(A,t,&n),PetscReal,n) 516 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatZeroEntries(Mat); 517 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatZeroRows(Mat,PetscInt,const PetscInt [],PetscScalar); 518 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatZeroRowsIS(Mat,IS,PetscScalar); 519 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatZeroColumns(Mat,PetscInt,const PetscInt [],const PetscScalar*); 520 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatZeroColumnsIS(Mat,IS,const PetscScalar*); 521 522 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatUseScaledForm(Mat,PetscTruth); 523 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatScaleSystem(Mat,Vec,Vec); 524 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatUnScaleSystem(Mat,Vec,Vec); 525 526 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatGetSize(Mat,PetscInt*,PetscInt*); 527 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatGetLocalSize(Mat,PetscInt*,PetscInt*); 528 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatGetOwnershipRange(Mat,PetscInt*,PetscInt*); 529 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatGetOwnershipRanges(Mat,const PetscInt**); 530 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatGetOwnershipRangeColumn(Mat,PetscInt*,PetscInt*); 531 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatGetOwnershipRangesColumn(Mat,const PetscInt**); 532 533 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatGetSubMatrices(Mat,PetscInt,const IS[],const IS[],MatReuse,Mat *[]); 534 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatDestroyMatrices(PetscInt,Mat *[]); 535 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatGetSubMatrix(Mat,IS,IS,PetscInt,MatReuse,Mat *); 536 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatGetSubMatrixRaw(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],PetscInt,MatReuse,Mat *); 537 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatGetSeqNonzeroStructure(Mat,Mat *[]); 538 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatDestroySeqNonzeroStructure(Mat *[]); 539 540 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatMerge(MPI_Comm,Mat,PetscInt,MatReuse,Mat*); 541 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatMerge_SeqsToMPI(MPI_Comm,Mat,PetscInt,PetscInt,MatReuse,Mat*); 542 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatMerge_SeqsToMPISymbolic(MPI_Comm,Mat,PetscInt,PetscInt,Mat*); 543 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatMerge_SeqsToMPINumeric(Mat,Mat); 544 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatDestroy_MPIAIJ_SeqsToMPI(Mat); 545 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatGetLocalMat(Mat,MatReuse,Mat*); 546 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatGetLocalMatCondensed(Mat,MatReuse,IS*,IS*,Mat*); 547 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatGetBrowsOfAcols(Mat,Mat,MatReuse,IS*,IS*,PetscInt*,Mat*); 548 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatGetBrowsOfAoCols(Mat,Mat,MatReuse,PetscInt**,MatScalar**,Mat*); 549 #if defined (PETSC_USE_CTABLE) 550 #include "petscctable.h" 551 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatGetCommunicationStructs(Mat, Vec *, PetscTable *, VecScatter *); 552 #else 553 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatGetCommunicationStructs(Mat, Vec *, PetscInt *[], VecScatter *); 554 #endif 555 556 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatIncreaseOverlap(Mat,PetscInt,IS[],PetscInt); 557 558 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatMatMult(Mat,Mat,MatReuse,PetscReal,Mat*); 559 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatMatMultSymbolic(Mat,Mat,PetscReal,Mat*); 560 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatMatMultNumeric(Mat,Mat,Mat); 561 562 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatPtAP(Mat,Mat,MatReuse,PetscReal,Mat*); 563 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatPtAPSymbolic(Mat,Mat,PetscReal,Mat*); 564 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatPtAPNumeric(Mat,Mat,Mat); 565 566 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatMatMultTranspose(Mat,Mat,MatReuse,PetscReal,Mat*); 567 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatMatMultTransposeSymbolic(Mat,Mat,PetscReal,Mat*); 568 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatMatMultTransposeNumeric(Mat,Mat,Mat); 569 570 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatAXPY(Mat,PetscScalar,Mat,MatStructure); 571 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatAYPX(Mat,PetscScalar,Mat,MatStructure); 572 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatCompress(Mat); 573 574 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatScale(Mat,PetscScalar); 575 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatShift(Mat,PetscScalar); 576 577 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatSetLocalToGlobalMapping(Mat,ISLocalToGlobalMapping); 578 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatSetLocalToGlobalMappingBlock(Mat,ISLocalToGlobalMapping); 579 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatZeroRowsLocal(Mat,PetscInt,const PetscInt [],PetscScalar); 580 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatZeroRowsLocalIS(Mat,IS,PetscScalar); 581 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatSetValuesLocal(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode); 582 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatSetValuesBlockedLocal(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode); 583 584 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatStashSetInitialSize(Mat,PetscInt,PetscInt); 585 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatStashGetInfo(Mat,PetscInt*,PetscInt*,PetscInt*,PetscInt*); 586 587 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatInterpolate(Mat,Vec,Vec); 588 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatInterpolateAdd(Mat,Vec,Vec,Vec); 589 PetscPolymorphicSubroutine(MatInterpolateAdd,(Mat A,Vec x,Vec y),(A,x,y,y)) 590 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatRestrict(Mat,Vec,Vec); 591 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatGetVecs(Mat,Vec*,Vec*); 592 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatGetRedundantMatrix(Mat,PetscInt,MPI_Comm,PetscInt,MatReuse,Mat*); 593 594 /*MC 595 MatSetValue - Set a single entry into a matrix. 596 597 Not collective 598 599 Input Parameters: 600 + m - the matrix 601 . row - the row location of the entry 602 . col - the column location of the entry 603 . value - the value to insert 604 - mode - either INSERT_VALUES or ADD_VALUES 605 606 Notes: 607 For efficiency one should use MatSetValues() and set several or many 608 values simultaneously if possible. 609 610 Level: beginner 611 612 .seealso: MatSetValues(), MatSetValueLocal() 613 M*/ 614 PETSC_STATIC_INLINE PetscErrorCode MatSetValue(Mat v,PetscInt i,PetscInt j,PetscScalar va,InsertMode mode) {return MatSetValues(v,1,&i,1,&j,&va,mode);} 615 616 PETSC_STATIC_INLINE PetscErrorCode MatGetValue(Mat v,PetscInt i,PetscInt j,PetscScalar *va) {return MatGetValues(v,1,&i,1,&j,va);} 617 618 PETSC_STATIC_INLINE PetscErrorCode MatSetValueLocal(Mat v,PetscInt i,PetscInt j,PetscScalar va,InsertMode mode) {return MatSetValuesLocal(v,1,&i,1,&j,&va,mode);} 619 620 /*MC 621 MatPreallocateInitialize - Begins the block of code that will count the number of nonzeros per 622 row in a matrix providing the data that one can use to correctly preallocate the matrix. 623 624 Synopsis: 625 PetscErrorCode MatPreallocateInitialize(MPI_Comm comm, PetscInt nrows, PetscInt ncols, PetscInt *dnz, PetscInt *onz) 626 627 Collective on MPI_Comm 628 629 Input Parameters: 630 + comm - the communicator that will share the eventually allocated matrix 631 . nrows - the number of LOCAL rows in the matrix 632 - ncols - the number of LOCAL columns in the matrix 633 634 Output Parameters: 635 + dnz - the array that will be passed to the matrix preallocation routines 636 - ozn - the other array passed to the matrix preallocation routines 637 638 639 Level: intermediate 640 641 Notes: 642 See the chapter in the users manual on performance for more details 643 644 Do not malloc or free dnz and onz, that is handled internally by these routines 645 646 Use MatPreallocateInitializeSymmetric() for symmetric matrices (MPISBAIJ matrices) 647 648 This is a MACRO not a function because it has a leading { that is closed by PetscPreallocateFinalize(). 649 650 Concepts: preallocation^Matrix 651 652 .seealso: MatPreallocateFinalize(), MatPreallocateSet(), MatPreallocateSymmetricSet(), MatPreallocateSetLocal(), 653 MatPreallocateInitializeSymmetric(), MatPreallocateSymmetricSetLocal() 654 M*/ 655 #define MatPreallocateInitialize(comm,nrows,ncols,dnz,onz) 0; \ 656 { \ 657 PetscErrorCode _4_ierr; PetscInt __nrows = (nrows),__ctmp = (ncols),__rstart,__start,__end; \ 658 _4_ierr = PetscMalloc2(__nrows,PetscInt,&dnz,__nrows,PetscInt,&onz);CHKERRQ(_4_ierr); \ 659 _4_ierr = PetscMemzero(dnz,__nrows*sizeof(PetscInt));CHKERRQ(_4_ierr);\ 660 _4_ierr = PetscMemzero(onz,__nrows*sizeof(PetscInt));CHKERRQ(_4_ierr);\ 661 _4_ierr = MPI_Scan(&__ctmp,&__end,1,MPIU_INT,MPI_SUM,comm);CHKERRQ(_4_ierr); __start = __end - __ctmp;\ 662 _4_ierr = MPI_Scan(&__nrows,&__rstart,1,MPIU_INT,MPI_SUM,comm);CHKERRQ(_4_ierr); __rstart = __rstart - __nrows; 663 664 /*MC 665 MatPreallocateSymmetricInitialize - Begins the block of code that will count the number of nonzeros per 666 row in a matrix providing the data that one can use to correctly preallocate the matrix. 667 668 Synopsis: 669 PetscErrorCode MatPreallocateSymmetricInitialize(MPI_Comm comm, PetscInt nrows, PetscInt ncols, PetscInt *dnz, PetscInt *onz) 670 671 Collective on MPI_Comm 672 673 Input Parameters: 674 + comm - the communicator that will share the eventually allocated matrix 675 . nrows - the number of LOCAL rows in the matrix 676 - ncols - the number of LOCAL columns in the matrix 677 678 Output Parameters: 679 + dnz - the array that will be passed to the matrix preallocation routines 680 - ozn - the other array passed to the matrix preallocation routines 681 682 683 Level: intermediate 684 685 Notes: 686 See the chapter in the users manual on performance for more details 687 688 Do not malloc or free dnz and onz, that is handled internally by these routines 689 690 This is a MACRO not a function because it has a leading { that is closed by PetscPreallocateFinalize(). 691 692 Concepts: preallocation^Matrix 693 694 .seealso: MatPreallocateFinalize(), MatPreallocateSet(), MatPreallocateSymmetricSet(), MatPreallocateSetLocal(), 695 MatPreallocateInitialize(), MatPreallocateSymmetricSetLocal() 696 M*/ 697 #define MatPreallocateSymmetricInitialize(comm,nrows,ncols,dnz,onz) 0; \ 698 { \ 699 PetscErrorCode _4_ierr; PetscInt __nrows = (nrows),__ctmp = (ncols),__rstart,__end; \ 700 _4_ierr = PetscMalloc2(__nrows,PetscInt,&dnz,__nrows,PetscInt,&onz);CHKERRQ(_4_ierr); \ 701 _4_ierr = PetscMemzero(dnz,__nrows*sizeof(PetscInt));CHKERRQ(_4_ierr);\ 702 _4_ierr = PetscMemzero(onz,__nrows*sizeof(PetscInt));CHKERRQ(_4_ierr);\ 703 _4_ierr = MPI_Scan(&__ctmp,&__end,1,MPIU_INT,MPI_SUM,comm);CHKERRQ(_4_ierr);\ 704 _4_ierr = MPI_Scan(&__nrows,&__rstart,1,MPIU_INT,MPI_SUM,comm);CHKERRQ(_4_ierr); __rstart = __rstart - __nrows; 705 706 /*MC 707 MatPreallocateSetLocal - Indicates the locations (rows and columns) in the matrix where nonzeros will be 708 inserted using a local number of the rows and columns 709 710 Synopsis: 711 PetscErrorCode MatPreallocateSetLocal(ISLocalToGlobalMappping map,PetscInt nrows, PetscInt *rows,PetscInt ncols, PetscInt *cols,PetscInt *dnz, PetscInt *onz) 712 713 Not Collective 714 715 Input Parameters: 716 + map - the mapping between local numbering and global numbering 717 . nrows - the number of rows indicated 718 . rows - the indices of the rows 719 . ncols - the number of columns in the matrix 720 . cols - the columns indicated 721 . dnz - the array that will be passed to the matrix preallocation routines 722 - ozn - the other array passed to the matrix preallocation routines 723 724 725 Level: intermediate 726 727 Notes: 728 See the chapter in the users manual on performance for more details 729 730 Do not malloc or free dnz and onz, that is handled internally by these routines 731 732 Concepts: preallocation^Matrix 733 734 .seealso: MatPreallocateFinalize(), MatPreallocateSet(), MatPreallocateSymmetricSet(), MatPreallocateInitialize(), 735 MatPreallocateInitialize(), MatPreallocateSymmetricSetLocal() 736 M*/ 737 #define MatPreallocateSetLocal(map,nrows,rows,ncols,cols,dnz,onz) 0;\ 738 {\ 739 PetscInt __l;\ 740 _4_ierr = ISLocalToGlobalMappingApply(map,nrows,rows,rows);CHKERRQ(_4_ierr);\ 741 _4_ierr = ISLocalToGlobalMappingApply(map,ncols,cols,cols);CHKERRQ(_4_ierr);\ 742 for (__l=0;__l<nrows;__l++) {\ 743 _4_ierr = MatPreallocateSet((rows)[__l],ncols,cols,dnz,onz);CHKERRQ(_4_ierr);\ 744 }\ 745 } 746 747 /*MC 748 MatPreallocateSymmetricSetLocal - Indicates the locations (rows and columns) in the matrix where nonzeros will be 749 inserted using a local number of the rows and columns 750 751 Synopsis: 752 PetscErrorCode MatPreallocateSymmetricSetLocal(ISLocalToGlobalMappping map,PetscInt nrows, PetscInt *rows,PetscInt ncols, PetscInt *cols,PetscInt *dnz, PetscInt *onz) 753 754 Not Collective 755 756 Input Parameters: 757 + map - the mapping between local numbering and global numbering 758 . nrows - the number of rows indicated 759 . rows - the indices of the rows 760 . ncols - the number of columns in the matrix 761 . cols - the columns indicated 762 . dnz - the array that will be passed to the matrix preallocation routines 763 - ozn - the other array passed to the matrix preallocation routines 764 765 766 Level: intermediate 767 768 Notes: 769 See the chapter in the users manual on performance for more details 770 771 Do not malloc or free dnz and onz that is handled internally by these routines 772 773 Concepts: preallocation^Matrix 774 775 .seealso: MatPreallocateFinalize(), MatPreallocateSet(), MatPreallocateSymmetricSet(), MatPreallocateInitialize(), 776 MatPreallocateInitialize(), MatPreallocateSymmetricSetLocal(), MatPreallocateSetLocal() 777 M*/ 778 #define MatPreallocateSymmetricSetLocal(map,nrows,rows,ncols,cols,dnz,onz) 0;\ 779 {\ 780 PetscInt __l;\ 781 _4_ierr = ISLocalToGlobalMappingApply(map,nrows,rows,rows);CHKERRQ(_4_ierr);\ 782 _4_ierr = ISLocalToGlobalMappingApply(map,ncols,cols,cols);CHKERRQ(_4_ierr);\ 783 for (__l=0;__l<nrows;__l++) {\ 784 _4_ierr = MatPreallocateSymmetricSet((rows)[__l],ncols,cols,dnz,onz);CHKERRQ(_4_ierr);\ 785 }\ 786 } 787 788 /*MC 789 MatPreallocateSet - Indicates the locations (rows and columns) in the matrix where nonzeros will be 790 inserted using a local number of the rows and columns 791 792 Synopsis: 793 PetscErrorCode MatPreallocateSet(PetscInt nrows, PetscInt *rows,PetscInt ncols, PetscInt *cols,PetscInt *dnz, PetscInt *onz) 794 795 Not Collective 796 797 Input Parameters: 798 + row - the row 799 . ncols - the number of columns in the matrix 800 - cols - the columns indicated 801 802 Output Parameters: 803 + dnz - the array that will be passed to the matrix preallocation routines 804 - ozn - the other array passed to the matrix preallocation routines 805 806 807 Level: intermediate 808 809 Notes: 810 See the chapter in the users manual on performance for more details 811 812 Do not malloc or free dnz and onz that is handled internally by these routines 813 814 This is a MACRO not a function because it uses variables declared in MatPreallocateInitialize(). 815 816 Concepts: preallocation^Matrix 817 818 .seealso: MatPreallocateFinalize(), MatPreallocateSet(), MatPreallocateSymmetricSet(), MatPreallocateInitialize(), 819 MatPreallocateInitialize(), MatPreallocateSymmetricSetLocal(), MatPreallocateSetLocal() 820 M*/ 821 #define MatPreallocateSet(row,nc,cols,dnz,onz) 0;\ 822 { PetscInt __i; \ 823 if (row < __rstart) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Trying to set preallocation for row %D less than first local row %D",row,__rstart);\ 824 if (row >= __rstart+__nrows) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Trying to set preallocation for row %D greater than last local row %D",row,__rstart+__nrows-1);\ 825 for (__i=0; __i<nc; __i++) {\ 826 if ((cols)[__i] < __start || (cols)[__i] >= __end) onz[row - __rstart]++; \ 827 else dnz[row - __rstart]++;\ 828 }\ 829 } 830 831 /*MC 832 MatPreallocateSymmetricSet - Indicates the locations (rows and columns) in the matrix where nonzeros will be 833 inserted using a local number of the rows and columns 834 835 Synopsis: 836 PetscErrorCode MatPreallocateSymmetricSet(PetscInt nrows, PetscInt *rows,PetscInt ncols, PetscInt *cols,PetscInt *dnz, PetscInt *onz) 837 838 Not Collective 839 840 Input Parameters: 841 + nrows - the number of rows indicated 842 . rows - the indices of the rows 843 . ncols - the number of columns in the matrix 844 . cols - the columns indicated 845 . dnz - the array that will be passed to the matrix preallocation routines 846 - ozn - the other array passed to the matrix preallocation routines 847 848 849 Level: intermediate 850 851 Notes: 852 See the chapter in the users manual on performance for more details 853 854 Do not malloc or free dnz and onz that is handled internally by these routines 855 856 This is a MACRO not a function because it uses variables declared in MatPreallocateInitialize(). 857 858 Concepts: preallocation^Matrix 859 860 .seealso: MatPreallocateFinalize(), MatPreallocateSet(), MatPreallocateSymmetricSet(), MatPreallocateInitialize(), 861 MatPreallocateInitialize(), MatPreallocateSymmetricSetLocal(), MatPreallocateSetLocal() 862 M*/ 863 #define MatPreallocateSymmetricSet(row,nc,cols,dnz,onz) 0;\ 864 { PetscInt __i; \ 865 for (__i=0; __i<nc; __i++) {\ 866 if (cols[__i] >= __end) onz[row - __rstart]++; \ 867 else if (cols[__i] >= row) dnz[row - __rstart]++;\ 868 }\ 869 } 870 871 /*MC 872 MatPreallocateLocation - An alternative to MatPreallocationSet() that puts the nonzero locations into the matrix if it exists 873 874 Synopsis: 875 PetscErrorCode MatPreallocateLocations(Mat A,PetscInt row,PetscInt ncols,PetscInt *cols,PetscInt *dnz,PetscInt *onz) 876 877 Not Collective 878 879 Input Parameters: 880 . A - matrix 881 . row - row where values exist (must be local to this process) 882 . ncols - number of columns 883 . cols - columns with nonzeros 884 . dnz - the array that will be passed to the matrix preallocation routines 885 - ozn - the other array passed to the matrix preallocation routines 886 887 888 Level: intermediate 889 890 Notes: 891 See the chapter in the users manual on performance for more details 892 893 Do not malloc or free dnz and onz that is handled internally by these routines 894 895 This is a MACRO not a function because it uses a bunch of variables private to the MatPreallocation.... routines. 896 897 Concepts: preallocation^Matrix 898 899 .seealso: MatPreallocateInitialize(), MatPreallocateSet(), MatPreallocateSymmetricSet(), MatPreallocateSetLocal(), 900 MatPreallocateSymmetricInitialize(), MatPreallocateSymmetricSetLocal() 901 M*/ 902 #define MatPreallocateLocation(A,row,ncols,cols,dnz,onz) 0;if (A) {ierr = MatSetValues(A,1,&row,ncols,cols,PETSC_NULL,INSERT_VALUES); CHKERRQ(ierr);} else {ierr = MatPreallocateSet(row,ncols,cols,dnz,onz);CHKERRQ(ierr);} 903 904 905 /*MC 906 MatPreallocateFinalize - Ends the block of code that will count the number of nonzeros per 907 row in a matrix providing the data that one can use to correctly preallocate the matrix. 908 909 Synopsis: 910 PetscErrorCode MatPreallocateFinalize(PetscInt *dnz, PetscInt *onz) 911 912 Collective on MPI_Comm 913 914 Input Parameters: 915 + dnz - the array that was be passed to the matrix preallocation routines 916 - ozn - the other array passed to the matrix preallocation routines 917 918 919 Level: intermediate 920 921 Notes: 922 See the chapter in the users manual on performance for more details 923 924 Do not malloc or free dnz and onz that is handled internally by these routines 925 926 This is a MACRO not a function because it closes the { started in MatPreallocateInitialize(). 927 928 Concepts: preallocation^Matrix 929 930 .seealso: MatPreallocateInitialize(), MatPreallocateSet(), MatPreallocateSymmetricSet(), MatPreallocateSetLocal(), 931 MatPreallocateSymmetricInitialize(), MatPreallocateSymmetricSetLocal() 932 M*/ 933 #define MatPreallocateFinalize(dnz,onz) 0;_4_ierr = PetscFree2(dnz,onz);CHKERRQ(_4_ierr);} 934 935 936 937 /* Routines unique to particular data structures */ 938 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatShellGetContext(Mat,void **); 939 PetscPolymorphicFunction(MatShellGetContext,(Mat A),(A,&t),void*,t) 940 941 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatInodeAdjustForInodes(Mat,IS*,IS*); 942 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatInodeGetInodeSizes(Mat,PetscInt *,PetscInt *[],PetscInt *); 943 944 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatSeqAIJSetColumnIndices(Mat,PetscInt[]); 945 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatSeqBAIJSetColumnIndices(Mat,PetscInt[]); 946 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatCreateSeqAIJWithArrays(MPI_Comm,PetscInt,PetscInt,PetscInt[],PetscInt[],PetscScalar[],Mat*); 947 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatCreateSeqBAIJWithArrays(MPI_Comm,PetscInt,PetscInt,PetscInt,PetscInt[],PetscInt[],PetscScalar[],Mat*); 948 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatCreateSeqSBAIJWithArrays(MPI_Comm,PetscInt,PetscInt,PetscInt,PetscInt[],PetscInt[],PetscScalar[],Mat*); 949 950 #define MAT_SKIP_ALLOCATION -4 951 952 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatSeqBAIJSetPreallocation(Mat,PetscInt,PetscInt,const PetscInt[]); 953 PetscPolymorphicSubroutine(MatSeqBAIJSetPreallocation,(Mat A,PetscInt bs,const PetscInt nnz[]),(A,bs,0,nnz)) 954 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatSeqSBAIJSetPreallocation(Mat,PetscInt,PetscInt,const PetscInt[]); 955 PetscPolymorphicSubroutine(MatSeqSBAIJSetPreallocation,(Mat A,PetscInt bs,const PetscInt nnz[]),(A,bs,0,nnz)) 956 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatSeqAIJSetPreallocation(Mat,PetscInt,const PetscInt[]); 957 PetscPolymorphicSubroutine(MatSeqAIJSetPreallocation,(Mat A,const PetscInt nnz[]),(A,0,nnz)) 958 959 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatMPIBAIJSetPreallocation(Mat,PetscInt,PetscInt,const PetscInt[],PetscInt,const PetscInt[]); 960 PetscPolymorphicSubroutine(MatMPIBAIJSetPreallocation,(Mat A,PetscInt bs,const PetscInt nnz[],const PetscInt onz[]),(A,bs,0,nnz,0,onz)) 961 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatMPISBAIJSetPreallocation(Mat,PetscInt,PetscInt,const PetscInt[],PetscInt,const PetscInt[]); 962 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatMPIAIJSetPreallocation(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[]); 963 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatSeqAIJSetPreallocationCSR(Mat,const PetscInt [],const PetscInt [],const PetscScalar []); 964 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatSeqBAIJSetPreallocationCSR(Mat,PetscInt,const PetscInt[],const PetscInt[],const PetscScalar[]); 965 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatMPIAIJSetPreallocationCSR(Mat,const PetscInt[],const PetscInt[],const PetscScalar[]); 966 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatMPIBAIJSetPreallocationCSR(Mat,PetscInt,const PetscInt[],const PetscInt[],const PetscScalar[]); 967 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatMPIAdjSetPreallocation(Mat,PetscInt[],PetscInt[],PetscInt[]); 968 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatMPIDenseSetPreallocation(Mat,PetscScalar[]); 969 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatSeqDenseSetPreallocation(Mat,PetscScalar[]); 970 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatMPIRowbsSetPreallocation(Mat,PetscInt,const PetscInt[]); 971 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatMPIAIJGetSeqAIJ(Mat,Mat*,Mat*,PetscInt*[]); 972 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatMPIBAIJGetSeqBAIJ(Mat,Mat*,Mat*,PetscInt*[]); 973 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatAdicSetLocalFunction(Mat,void (*)(void)); 974 975 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatSeqDenseSetLDA(Mat,PetscInt); 976 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatDenseGetLocalMatrix(Mat,Mat*); 977 978 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatStoreValues(Mat); 979 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatRetrieveValues(Mat); 980 981 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatDAADSetCtx(Mat,void*); 982 983 /* 984 These routines are not usually accessed directly, rather solving is 985 done through the KSP and PC interfaces. 986 */ 987 988 /*E 989 MatOrderingType - String with the name of a PETSc matrix ordering or the creation function 990 with an optional dynamic library name, for example 991 http://www.mcs.anl.gov/petsc/lib.a:orderingcreate() 992 993 Level: beginner 994 995 Cannot use const because the PC objects manipulate the string 996 997 .seealso: MatGetOrdering() 998 E*/ 999 #define MatOrderingType char* 1000 #define MATORDERING_NATURAL "natural" 1001 #define MATORDERING_ND "nd" 1002 #define MATORDERING_1WD "1wd" 1003 #define MATORDERING_RCM "rcm" 1004 #define MATORDERING_QMD "qmd" 1005 #define MATORDERING_ROWLENGTH "rowlength" 1006 #define MATORDERING_DSC_ND "dsc_nd" 1007 #define MATORDERING_DSC_MMD "dsc_mmd" 1008 #define MATORDERING_DSC_MDF "dsc_mdf" 1009 #define MATORDERING_CONSTRAINED "constrained" 1010 #define MATORDERING_IDENTITY "identity" 1011 #define MATORDERING_REVERSE "reverse" 1012 1013 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatGetOrdering(Mat,const MatOrderingType,IS*,IS*); 1014 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatGetOrderingList(PetscFList *list); 1015 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatOrderingRegister(const char[],const char[],const char[],PetscErrorCode(*)(Mat,const MatOrderingType,IS*,IS*)); 1016 1017 /*MC 1018 MatOrderingRegisterDynamic - Adds a new sparse matrix ordering to the 1019 matrix package. 1020 1021 Synopsis: 1022 PetscErrorCode MatOrderingRegisterDynamic(char *name_ordering,char *path,char *name_create,PetscErrorCode (*routine_create)(MatOrdering)) 1023 1024 Not Collective 1025 1026 Input Parameters: 1027 + sname - name of ordering (for example MATORDERING_ND) 1028 . path - location of library where creation routine is 1029 . name - name of function that creates the ordering type,a string 1030 - function - function pointer that creates the ordering 1031 1032 Level: developer 1033 1034 If dynamic libraries are used, then the fourth input argument (function) 1035 is ignored. 1036 1037 Sample usage: 1038 .vb 1039 MatOrderingRegisterDynamic("my_order",/home/username/my_lib/lib/libO/solaris/mylib.a, 1040 "MyOrder",MyOrder); 1041 .ve 1042 1043 Then, your partitioner can be chosen with the procedural interface via 1044 $ MatOrderingSetType(part,"my_order) 1045 or at runtime via the option 1046 $ -pc_factor_mat_ordering_type my_order 1047 1048 ${PETSC_ARCH} occuring in pathname will be replaced with appropriate values. 1049 1050 .keywords: matrix, ordering, register 1051 1052 .seealso: MatOrderingRegisterDestroy(), MatOrderingRegisterAll() 1053 M*/ 1054 #if defined(PETSC_USE_DYNAMIC_LIBRARIES) 1055 #define MatOrderingRegisterDynamic(a,b,c,d) MatOrderingRegister(a,b,c,0) 1056 #else 1057 #define MatOrderingRegisterDynamic(a,b,c,d) MatOrderingRegister(a,b,c,d) 1058 #endif 1059 1060 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatOrderingRegisterDestroy(void); 1061 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatOrderingRegisterAll(const char[]); 1062 extern PetscTruth MatOrderingRegisterAllCalled; 1063 extern PetscFList MatOrderingList; 1064 1065 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatReorderForNonzeroDiagonal(Mat,PetscReal,IS,IS); 1066 1067 /*S 1068 MatFactorInfo - Data passed into the matrix factorization routines 1069 1070 In Fortran these are simply double precision arrays of size MAT_FACTORINFO_SIZE, that is use 1071 $ MatFactorInfo info(MAT_FACTORINFO_SIZE) 1072 1073 Notes: These are not usually directly used by users, instead use PC type of LU, ILU, CHOLESKY or ICC. 1074 1075 You can use MatFactorInfoInitialize() to set default values. 1076 1077 Level: developer 1078 1079 .seealso: MatLUFactorSymbolic(), MatILUFactorSymbolic(), MatCholeskyFactorSymbolic(), MatICCFactorSymbolic(), MatICCFactor(), 1080 MatFactorInfoInitialize() 1081 1082 S*/ 1083 typedef struct { 1084 PetscReal shiftnz; /* scaling of identity added to matrix to prevent zero pivots */ 1085 PetscReal shiftpd; /* if true, shift until positive pivots */ 1086 PetscReal diagonal_fill; /* force diagonal to fill in if initially not filled */ 1087 PetscReal usedt; 1088 PetscReal dt; /* drop tolerance */ 1089 PetscReal dtcol; /* tolerance for pivoting */ 1090 PetscReal dtcount; /* maximum nonzeros to be allowed per row */ 1091 PetscReal fill; /* expected fill, nonzeros in factored matrix/nonzeros in original matrix */ 1092 PetscReal levels; /* ICC/ILU(levels) */ 1093 PetscReal pivotinblocks; /* for BAIJ and SBAIJ matrices pivot in factorization on blocks, default 1.0 1094 factorization may be faster if do not pivot */ 1095 PetscReal shiftinblocks; /* if block in block factorization has zero pivot then shift diagonal until non-singular */ 1096 PetscReal zeropivot; /* pivot is called zero if less than this */ 1097 } MatFactorInfo; 1098 1099 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatFactorInfoInitialize(MatFactorInfo*); 1100 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatCholeskyFactor(Mat,IS,const MatFactorInfo*); 1101 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatCholeskyFactorSymbolic(Mat,Mat,IS,const MatFactorInfo*); 1102 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatCholeskyFactorNumeric(Mat,Mat,const MatFactorInfo*); 1103 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatLUFactor(Mat,IS,IS,const MatFactorInfo*); 1104 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatILUFactor(Mat,IS,IS,const MatFactorInfo*); 1105 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatLUFactorSymbolic(Mat,Mat,IS,IS,const MatFactorInfo*); 1106 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatILUFactorSymbolic(Mat,Mat,IS,IS,const MatFactorInfo*); 1107 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatICCFactorSymbolic(Mat,Mat,IS,const MatFactorInfo*); 1108 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatICCFactor(Mat,IS,const MatFactorInfo*); 1109 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatLUFactorNumeric(Mat,Mat,const MatFactorInfo*); 1110 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatILUDTFactor(Mat,IS,IS,const MatFactorInfo*,Mat *); 1111 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatGetInertia(Mat,PetscInt*,PetscInt*,PetscInt*); 1112 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatSolve(Mat,Vec,Vec); 1113 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatForwardSolve(Mat,Vec,Vec); 1114 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatBackwardSolve(Mat,Vec,Vec); 1115 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatSolveAdd(Mat,Vec,Vec,Vec); 1116 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatSolveTranspose(Mat,Vec,Vec); 1117 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatSolveTransposeAdd(Mat,Vec,Vec,Vec); 1118 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatSolves(Mat,Vecs,Vecs); 1119 1120 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatSetUnfactored(Mat); 1121 1122 /*E 1123 MatSORType - What type of (S)SOR to perform 1124 1125 Level: beginner 1126 1127 May be bitwise ORd together 1128 1129 Any additions/changes here MUST also be made in include/finclude/petscmat.h 1130 1131 MatSORType may be bitwise ORd together, so do not change the numbers 1132 1133 .seealso: MatRelax(), MatPBRelax() 1134 E*/ 1135 typedef enum {SOR_FORWARD_SWEEP=1,SOR_BACKWARD_SWEEP=2,SOR_SYMMETRIC_SWEEP=3, 1136 SOR_LOCAL_FORWARD_SWEEP=4,SOR_LOCAL_BACKWARD_SWEEP=8, 1137 SOR_LOCAL_SYMMETRIC_SWEEP=12,SOR_ZERO_INITIAL_GUESS=16, 1138 SOR_EISENSTAT=32,SOR_APPLY_UPPER=64,SOR_APPLY_LOWER=128} MatSORType; 1139 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatRelax(Mat,Vec,PetscReal,MatSORType,PetscReal,PetscInt,PetscInt,Vec); 1140 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatPBRelax(Mat,Vec,PetscReal,MatSORType,PetscReal,PetscInt,PetscInt,Vec); 1141 1142 /* 1143 These routines are for efficiently computing Jacobians via finite differences. 1144 */ 1145 1146 /*E 1147 MatColoringType - String with the name of a PETSc matrix coloring or the creation function 1148 with an optional dynamic library name, for example 1149 http://www.mcs.anl.gov/petsc/lib.a:coloringcreate() 1150 1151 Level: beginner 1152 1153 .seealso: MatGetColoring() 1154 E*/ 1155 #define MatColoringType char* 1156 #define MATCOLORING_NATURAL "natural" 1157 #define MATCOLORING_SL "sl" 1158 #define MATCOLORING_LF "lf" 1159 #define MATCOLORING_ID "id" 1160 1161 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatGetColoring(Mat,const MatColoringType,ISColoring*); 1162 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatColoringRegister(const char[],const char[],const char[],PetscErrorCode(*)(Mat,MatColoringType,ISColoring *)); 1163 1164 /*MC 1165 MatColoringRegisterDynamic - Adds a new sparse matrix coloring to the 1166 matrix package. 1167 1168 Synopsis: 1169 PetscErrorCode MatColoringRegisterDynamic(char *name_coloring,char *path,char *name_create,PetscErrorCode (*routine_create)(MatColoring)) 1170 1171 Not Collective 1172 1173 Input Parameters: 1174 + sname - name of Coloring (for example MATCOLORING_SL) 1175 . path - location of library where creation routine is 1176 . name - name of function that creates the Coloring type, a string 1177 - function - function pointer that creates the coloring 1178 1179 Level: developer 1180 1181 If dynamic libraries are used, then the fourth input argument (function) 1182 is ignored. 1183 1184 Sample usage: 1185 .vb 1186 MatColoringRegisterDynamic("my_color",/home/username/my_lib/lib/libO/solaris/mylib.a, 1187 "MyColor",MyColor); 1188 .ve 1189 1190 Then, your partitioner can be chosen with the procedural interface via 1191 $ MatColoringSetType(part,"my_color") 1192 or at runtime via the option 1193 $ -mat_coloring_type my_color 1194 1195 $PETSC_ARCH occuring in pathname will be replaced with appropriate values. 1196 1197 .keywords: matrix, Coloring, register 1198 1199 .seealso: MatColoringRegisterDestroy(), MatColoringRegisterAll() 1200 M*/ 1201 #if defined(PETSC_USE_DYNAMIC_LIBRARIES) 1202 #define MatColoringRegisterDynamic(a,b,c,d) MatColoringRegister(a,b,c,0) 1203 #else 1204 #define MatColoringRegisterDynamic(a,b,c,d) MatColoringRegister(a,b,c,d) 1205 #endif 1206 1207 extern PetscTruth MatColoringRegisterAllCalled; 1208 1209 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatColoringRegisterAll(const char[]); 1210 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatColoringRegisterDestroy(void); 1211 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatColoringPatch(Mat,PetscInt,PetscInt,ISColoringValue[],ISColoring*); 1212 1213 /*S 1214 MatFDColoring - Object for computing a sparse Jacobian via finite differences 1215 and coloring 1216 1217 Level: beginner 1218 1219 Concepts: coloring, sparse Jacobian, finite differences 1220 1221 .seealso: MatFDColoringCreate() 1222 S*/ 1223 typedef struct _p_MatFDColoring* MatFDColoring; 1224 1225 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatFDColoringCreate(Mat,ISColoring,MatFDColoring *); 1226 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatFDColoringDestroy(MatFDColoring); 1227 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatFDColoringView(MatFDColoring,PetscViewer); 1228 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatFDColoringSetFunction(MatFDColoring,PetscErrorCode (*)(void),void*); 1229 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatFDColoringGetFunction(MatFDColoring,PetscErrorCode (**)(void),void**); 1230 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatFDColoringSetParameters(MatFDColoring,PetscReal,PetscReal); 1231 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatFDColoringSetFromOptions(MatFDColoring); 1232 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatFDColoringApply(Mat,MatFDColoring,Vec,MatStructure*,void *); 1233 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatFDColoringApplyTS(Mat,MatFDColoring,PetscReal,Vec,MatStructure*,void *); 1234 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatFDColoringSetF(MatFDColoring,Vec); 1235 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatFDColoringGetPerturbedColumns(MatFDColoring,PetscInt*,PetscInt*[]); 1236 /* 1237 These routines are for partitioning matrices: currently used only 1238 for adjacency matrix, MatCreateMPIAdj(). 1239 */ 1240 1241 /*S 1242 MatPartitioning - Object for managing the partitioning of a matrix or graph 1243 1244 Level: beginner 1245 1246 Concepts: partitioning 1247 1248 .seealso: MatPartitioningCreate(), MatPartitioningType 1249 S*/ 1250 typedef struct _p_MatPartitioning* MatPartitioning; 1251 1252 /*E 1253 MatPartitioningType - String with the name of a PETSc matrix partitioning or the creation function 1254 with an optional dynamic library name, for example 1255 http://www.mcs.anl.gov/petsc/lib.a:partitioningcreate() 1256 1257 Level: beginner 1258 1259 .seealso: MatPartitioningCreate(), MatPartitioning 1260 E*/ 1261 #define MatPartitioningType char* 1262 #define MAT_PARTITIONING_CURRENT "current" 1263 #define MAT_PARTITIONING_SQUARE "square" 1264 #define MAT_PARTITIONING_PARMETIS "parmetis" 1265 #define MAT_PARTITIONING_CHACO "chaco" 1266 #define MAT_PARTITIONING_JOSTLE "jostle" 1267 #define MAT_PARTITIONING_PARTY "party" 1268 #define MAT_PARTITIONING_SCOTCH "scotch" 1269 1270 1271 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatPartitioningCreate(MPI_Comm,MatPartitioning*); 1272 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatPartitioningSetType(MatPartitioning,const MatPartitioningType); 1273 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatPartitioningSetNParts(MatPartitioning,PetscInt); 1274 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatPartitioningSetAdjacency(MatPartitioning,Mat); 1275 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatPartitioningSetVertexWeights(MatPartitioning,const PetscInt[]); 1276 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatPartitioningSetPartitionWeights(MatPartitioning,const PetscReal []); 1277 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatPartitioningApply(MatPartitioning,IS*); 1278 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatPartitioningDestroy(MatPartitioning); 1279 1280 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatPartitioningRegister(const char[],const char[],const char[],PetscErrorCode (*)(MatPartitioning)); 1281 1282 /*MC 1283 MatPartitioningRegisterDynamic - Adds a new sparse matrix partitioning to the 1284 matrix package. 1285 1286 Synopsis: 1287 PetscErrorCode MatPartitioningRegisterDynamic(char *name_partitioning,char *path,char *name_create,PetscErrorCode (*routine_create)(MatPartitioning)) 1288 1289 Not Collective 1290 1291 Input Parameters: 1292 + sname - name of partitioning (for example MAT_PARTITIONING_CURRENT) or parmetis 1293 . path - location of library where creation routine is 1294 . name - name of function that creates the partitioning type, a string 1295 - function - function pointer that creates the partitioning type 1296 1297 Level: developer 1298 1299 If dynamic libraries are used, then the fourth input argument (function) 1300 is ignored. 1301 1302 Sample usage: 1303 .vb 1304 MatPartitioningRegisterDynamic("my_part",/home/username/my_lib/lib/libO/solaris/mylib.a, 1305 "MyPartCreate",MyPartCreate); 1306 .ve 1307 1308 Then, your partitioner can be chosen with the procedural interface via 1309 $ MatPartitioningSetType(part,"my_part") 1310 or at runtime via the option 1311 $ -mat_partitioning_type my_part 1312 1313 $PETSC_ARCH occuring in pathname will be replaced with appropriate values. 1314 1315 .keywords: matrix, partitioning, register 1316 1317 .seealso: MatPartitioningRegisterDestroy(), MatPartitioningRegisterAll() 1318 M*/ 1319 #if defined(PETSC_USE_DYNAMIC_LIBRARIES) 1320 #define MatPartitioningRegisterDynamic(a,b,c,d) MatPartitioningRegister(a,b,c,0) 1321 #else 1322 #define MatPartitioningRegisterDynamic(a,b,c,d) MatPartitioningRegister(a,b,c,d) 1323 #endif 1324 1325 extern PetscTruth MatPartitioningRegisterAllCalled; 1326 1327 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatPartitioningRegisterAll(const char[]); 1328 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatPartitioningRegisterDestroy(void); 1329 1330 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatPartitioningView(MatPartitioning,PetscViewer); 1331 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatPartitioningSetFromOptions(MatPartitioning); 1332 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatPartitioningGetType(MatPartitioning,const MatPartitioningType*); 1333 1334 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatPartitioningParmetisSetCoarseSequential(MatPartitioning); 1335 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatPartitioningParmetisGetEdgeCut(MatPartitioning, PetscInt *); 1336 1337 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatPartitioningJostleSetCoarseLevel(MatPartitioning,PetscReal); 1338 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatPartitioningJostleSetCoarseSequential(MatPartitioning); 1339 1340 typedef enum {MP_CHACO_MULTILEVEL_KL,MP_CHACO_SPECTRAL,MP_CHACO_LINEAR,MP_CHACO_RANDOM, MP_CHACO_SCATTERED} MPChacoGlobalType; 1341 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatPartitioningChacoSetGlobal(MatPartitioning, MPChacoGlobalType); 1342 typedef enum { MP_CHACO_KERNIGHAN_LIN, MP_CHACO_NONE } MPChacoLocalType; 1343 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatPartitioningChacoSetLocal(MatPartitioning, MPChacoLocalType); 1344 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatPartitioningChacoSetCoarseLevel(MatPartitioning,PetscReal); 1345 typedef enum { MP_CHACO_LANCZOS, MP_CHACO_RQI_SYMMLQ } MPChacoEigenType; 1346 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatPartitioningChacoSetEigenSolver(MatPartitioning,MPChacoEigenType); 1347 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatPartitioningChacoSetEigenTol(MatPartitioning, PetscReal); 1348 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatPartitioningChacoSetEigenNumber(MatPartitioning, PetscInt); 1349 1350 #define MP_PARTY_OPT "opt" 1351 #define MP_PARTY_LIN "lin" 1352 #define MP_PARTY_SCA "sca" 1353 #define MP_PARTY_RAN "ran" 1354 #define MP_PARTY_GBF "gbf" 1355 #define MP_PARTY_GCF "gcf" 1356 #define MP_PARTY_BUB "bub" 1357 #define MP_PARTY_DEF "def" 1358 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatPartitioningPartySetGlobal(MatPartitioning, const char*); 1359 #define MP_PARTY_HELPFUL_SETS "hs" 1360 #define MP_PARTY_KERNIGHAN_LIN "kl" 1361 #define MP_PARTY_NONE "no" 1362 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatPartitioningPartySetLocal(MatPartitioning, const char*); 1363 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatPartitioningPartySetCoarseLevel(MatPartitioning,PetscReal); 1364 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatPartitioningPartySetBipart(MatPartitioning,PetscTruth); 1365 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatPartitioningPartySetMatchOptimization(MatPartitioning,PetscTruth); 1366 1367 typedef enum { MP_SCOTCH_GREEDY, MP_SCOTCH_GPS, MP_SCOTCH_GR_GPS } MPScotchGlobalType; 1368 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatPartitioningScotchSetArch(MatPartitioning,const char*); 1369 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatPartitioningScotchSetMultilevel(MatPartitioning); 1370 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatPartitioningScotchSetGlobal(MatPartitioning,MPScotchGlobalType); 1371 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatPartitioningScotchSetCoarseLevel(MatPartitioning,PetscReal); 1372 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatPartitioningScotchSetHostList(MatPartitioning,const char*); 1373 typedef enum { MP_SCOTCH_KERNIGHAN_LIN, MP_SCOTCH_NONE } MPScotchLocalType; 1374 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatPartitioningScotchSetLocal(MatPartitioning,MPScotchLocalType); 1375 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatPartitioningScotchSetMapping(MatPartitioning); 1376 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatPartitioningScotchSetStrategy(MatPartitioning,char*); 1377 1378 /* 1379 If you add entries here you must also add them to finclude/petscmat.h 1380 */ 1381 typedef enum { MATOP_SET_VALUES=0, 1382 MATOP_GET_ROW=1, 1383 MATOP_RESTORE_ROW=2, 1384 MATOP_MULT=3, 1385 MATOP_MULT_ADD=4, 1386 MATOP_MULT_TRANSPOSE=5, 1387 MATOP_MULT_TRANSPOSE_ADD=6, 1388 MATOP_SOLVE=7, 1389 MATOP_SOLVE_ADD=8, 1390 MATOP_SOLVE_TRANSPOSE=9, 1391 MATOP_SOLVE_TRANSPOSE_ADD=10, 1392 MATOP_LUFACTOR=11, 1393 MATOP_CHOLESKYFACTOR=12, 1394 MATOP_RELAX=13, 1395 MATOP_TRANSPOSE=14, 1396 MATOP_GETINFO=15, 1397 MATOP_EQUAL=16, 1398 MATOP_GET_DIAGONAL=17, 1399 MATOP_DIAGONAL_SCALE=18, 1400 MATOP_NORM=19, 1401 MATOP_ASSEMBLY_BEGIN=20, 1402 MATOP_ASSEMBLY_END=21, 1403 MATOP_COMPRESS=22, 1404 MATOP_SET_OPTION=23, 1405 MATOP_ZERO_ENTRIES=24, 1406 MATOP_ZERO_ROWS=25, 1407 MATOP_LUFACTOR_SYMBOLIC=26, 1408 MATOP_LUFACTOR_NUMERIC=27, 1409 MATOP_CHOLESKY_FACTOR_SYMBOLIC=28, 1410 MATOP_CHOLESKY_FACTOR_NUMERIC=29, 1411 MATOP_SETUP_PREALLOCATION=30, 1412 MATOP_ILUFACTOR_SYMBOLIC=31, 1413 MATOP_ICCFACTOR_SYMBOLIC=32, 1414 MATOP_GET_ARRAY=33, 1415 MATOP_RESTORE_ARRAY=34, 1416 MATOP_DUPLICATE=35, 1417 MATOP_FORWARD_SOLVE=36, 1418 MATOP_BACKWARD_SOLVE=37, 1419 MATOP_ILUFACTOR=38, 1420 MATOP_ICCFACTOR=39, 1421 MATOP_AXPY=40, 1422 MATOP_GET_SUBMATRICES=41, 1423 MATOP_INCREASE_OVERLAP=42, 1424 MATOP_GET_VALUES=43, 1425 MATOP_COPY=44, 1426 MATOP_GET_ROW_MAX=45, 1427 MATOP_SCALE=46, 1428 MATOP_SHIFT=47, 1429 MATOP_DIAGONAL_SHIFT=48, 1430 MATOP_ILUDT_FACTOR=49, 1431 MATOP_SET_BLOCK_SIZE=50, 1432 MATOP_GET_ROW_IJ=51, 1433 MATOP_RESTORE_ROW_IJ=52, 1434 MATOP_GET_COLUMN_IJ=53, 1435 MATOP_RESTORE_COLUMN_IJ=54, 1436 MATOP_FDCOLORING_CREATE=55, 1437 MATOP_COLORING_PATCH=56, 1438 MATOP_SET_UNFACTORED=57, 1439 MATOP_PERMUTE=58, 1440 MATOP_SET_VALUES_BLOCKED=59, 1441 MATOP_GET_SUBMATRIX=60, 1442 MATOP_DESTROY=61, 1443 MATOP_VIEW=62, 1444 MATOP_CONVERT_FROM=63, 1445 MATOP_USE_SCALED_FORM=64, 1446 MATOP_SCALE_SYSTEM=65, 1447 MATOP_UNSCALE_SYSTEM=66, 1448 MATOP_SET_LOCAL_TO_GLOBAL_MAP=67, 1449 MATOP_SET_VALUES_LOCAL=68, 1450 MATOP_ZERO_ROWS_LOCAL=69, 1451 MATOP_GET_ROW_MAX_ABS=70, 1452 MATOP_GET_ROW_MIN_ABS=71, 1453 MATOP_CONVERT=72, 1454 MATOP_SET_COLORING=73, 1455 MATOP_SET_VALUES_ADIC=74, 1456 MATOP_SET_VALUES_ADIFOR=75, 1457 MATOP_FD_COLORING_APPLY=76, 1458 MATOP_SET_FROM_OPTIONS=77, 1459 MATOP_MULT_CON=78, 1460 MATOP_MULT_TRANSPOSE_CON=79, 1461 MATOP_PERMUTE_SPARSIFY=80, 1462 MATOP_MULT_MULTIPLE=81, 1463 MATOP_SOLVE_MULTIPLE=82, 1464 MATOP_GET_INERTIA=83, 1465 MATOP_LOAD=84, 1466 MATOP_IS_SYMMETRIC=85, 1467 MATOP_IS_HERMITIAN=86, 1468 MATOP_IS_STRUCTURALLY_SYMMETRIC=87, 1469 MATOP_PB_RELAX=88, 1470 MATOP_GET_VECS=89, 1471 MATOP_MAT_MULT=90, 1472 MATOP_MAT_MULT_SYMBOLIC=91, 1473 MATOP_MAT_MULT_NUMERIC=92, 1474 MATOP_PTAP=93, 1475 MATOP_PTAP_SYMBOLIC=94, 1476 MATOP_PTAP_NUMERIC=95, 1477 MATOP_MAT_MULTTRANSPOSE=96, 1478 MATOP_MAT_MULTTRANSPOSE_SYMBOLIC=97, 1479 MATOP_MAT_MULTTRANSPOSE_NUMERIC=98, 1480 MATOP_PTAP_SYMBOLIC_SEQAIJ=99, 1481 MATOP_PTAP_NUMERIC_SEQAIJ=100, 1482 MATOP_PTAP_SYMBOLIC_MPIAIJ=101, 1483 MATOP_PTAP_NUMERIC_MPIAIJ=102, 1484 MATOP_CONJUGATE=103, 1485 MATOP_SET_SIZES=104, 1486 MATOP_SET_VALUES_ROW = 105, 1487 MATOP_REAL_PART=106, 1488 MATOP_IMAG_PART=107, 1489 MATOP_GET_ROW_UTRIANGULAR=108, 1490 MATOP_RESTORE_ROW_UTRIANGULAR=109, 1491 MATOP_MATSOLVE=110, 1492 MATOP_GET_REDUNDANTMATRIX=111, 1493 MATOP_GET_ROW_MIN=112, 1494 MATOP_GET_COLUMN_VEC=113, 1495 MATOP_MISSING_DIAGONAL=114, 1496 MATOP_MATGETSEQNONZEROSTRUCTURE=115, 1497 MATOP_DESTROY_SOLVER=116 1498 } MatOperation; 1499 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatHasOperation(Mat,MatOperation,PetscTruth*); 1500 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatShellSetOperation(Mat,MatOperation,void(*)(void)); 1501 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatShellGetOperation(Mat,MatOperation,void(**)(void)); 1502 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatShellSetContext(Mat,void*); 1503 1504 /* 1505 Codes for matrices stored on disk. By default they are 1506 stored in a universal format. By changing the format with 1507 PetscViewerSetFormat(viewer,PETSC_VIEWER_NATIVE); the matrices will 1508 be stored in a way natural for the matrix, for example dense matrices 1509 would be stored as dense. Matrices stored this way may only be 1510 read into matrices of the same time. 1511 */ 1512 #define MATRIX_BINARY_FORMAT_DENSE -1 1513 1514 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatMPIBAIJSetHashTableFactor(Mat,PetscReal); 1515 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatISGetLocalMat(Mat,Mat*); 1516 1517 /*S 1518 MatNullSpace - Object that removes a null space from a vector, i.e. 1519 orthogonalizes the vector to a subsapce 1520 1521 Level: advanced 1522 1523 Concepts: matrix; linear operator, null space 1524 1525 Users manual sections: 1526 . sec_singular 1527 1528 .seealso: MatNullSpaceCreate() 1529 S*/ 1530 typedef struct _p_MatNullSpace* MatNullSpace; 1531 1532 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatNullSpaceCreate(MPI_Comm,PetscTruth,PetscInt,const Vec[],MatNullSpace*); 1533 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatNullSpaceSetFunction(MatNullSpace,PetscErrorCode (*)(Vec,void*),void*); 1534 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatNullSpaceDestroy(MatNullSpace); 1535 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatNullSpaceRemove(MatNullSpace,Vec,Vec*); 1536 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatNullSpaceAttach(Mat,MatNullSpace); 1537 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatNullSpaceTest(MatNullSpace,Mat,PetscTruth *); 1538 1539 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatReorderingSeqSBAIJ(Mat,IS); 1540 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatMPISBAIJSetHashTableFactor(Mat,PetscReal); 1541 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatSeqSBAIJSetColumnIndices(Mat,PetscInt *); 1542 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatSeqBAIJInvertBlockDiagonal(Mat); 1543 1544 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatCreateMAIJ(Mat,PetscInt,Mat*); 1545 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatMAIJRedimension(Mat,PetscInt,Mat*); 1546 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatMAIJGetAIJ(Mat,Mat*); 1547 1548 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatComputeExplicitOperator(Mat,Mat*); 1549 1550 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatDiagonalScaleLocal(Mat,Vec); 1551 1552 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatCreateMFFD(MPI_Comm,PetscInt,PetscInt,PetscInt,PetscInt,Mat*); 1553 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatMFFDSetBase(Mat,Vec,Vec); 1554 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatMFFDSetFunction(Mat,PetscErrorCode(*)(void*,Vec,Vec),void*); 1555 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatMFFDSetFunctioni(Mat,PetscErrorCode (*)(void*,PetscInt,Vec,PetscScalar*)); 1556 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatMFFDSetFunctioniBase(Mat,PetscErrorCode (*)(void*,Vec)); 1557 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatMFFDAddNullSpace(Mat,MatNullSpace); 1558 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatMFFDSetHHistory(Mat,PetscScalar[],PetscInt); 1559 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatMFFDResetHHistory(Mat); 1560 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatMFFDSetFunctionError(Mat,PetscReal); 1561 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatMFFDSetPeriod(Mat,PetscInt); 1562 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatMFFDGetH(Mat,PetscScalar *); 1563 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatMFFDSetFromOptions(Mat); 1564 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatMFFDCheckPositivity(void*,Vec,Vec,PetscScalar*); 1565 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatMFFDSetCheckh(Mat,PetscErrorCode (*)(void*,Vec,Vec,PetscScalar*),void*); 1566 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatMFFDDSSetUmin(Mat,PetscReal); 1567 1568 1569 typedef struct _p_MatMFFD* MatMFFD; 1570 1571 /*E 1572 MatMFFDType - algorithm used to compute the h used in computing matrix-vector products via differencing of the function 1573 1574 Level: beginner 1575 1576 .seealso: MatMFFDSetType(), MatMFFDRegister() 1577 E*/ 1578 #define MatMFFDType char* 1579 #define MATMFFD_DS "ds" 1580 #define MATMFFD_WP "wp" 1581 1582 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatMFFDSetType(Mat,const MatMFFDType); 1583 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatMFFDRegister(const char[],const char[],const char[],PetscErrorCode (*)(MatMFFD)); 1584 1585 /*MC 1586 MatMFFDRegisterDynamic - Adds a method to the MatMFFD registry. 1587 1588 Synopsis: 1589 PetscErrorCode MatMFFDRegisterDynamic(char *name_solver,char *path,char *name_create,PetscErrorCode (*routine_create)(MatMFFD)) 1590 1591 Not Collective 1592 1593 Input Parameters: 1594 + name_solver - name of a new user-defined compute-h module 1595 . path - path (either absolute or relative) the library containing this solver 1596 . name_create - name of routine to create method context 1597 - routine_create - routine to create method context 1598 1599 Level: developer 1600 1601 Notes: 1602 MatMFFDRegisterDynamic() may be called multiple times to add several user-defined solvers. 1603 1604 If dynamic libraries are used, then the fourth input argument (routine_create) 1605 is ignored. 1606 1607 Sample usage: 1608 .vb 1609 MatMFFDRegisterDynamic("my_h",/home/username/my_lib/lib/libO/solaris/mylib.a, 1610 "MyHCreate",MyHCreate); 1611 .ve 1612 1613 Then, your solver can be chosen with the procedural interface via 1614 $ MatMFFDSetType(mfctx,"my_h") 1615 or at runtime via the option 1616 $ -snes_mf_type my_h 1617 1618 .keywords: MatMFFD, register 1619 1620 .seealso: MatMFFDRegisterAll(), MatMFFDRegisterDestroy() 1621 M*/ 1622 #if defined(PETSC_USE_DYNAMIC_LIBRARIES) 1623 #define MatMFFDRegisterDynamic(a,b,c,d) MatMFFDRegister(a,b,c,0) 1624 #else 1625 #define MatMFFDRegisterDynamic(a,b,c,d) MatMFFDRegister(a,b,c,d) 1626 #endif 1627 1628 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatMFFDRegisterAll(const char[]); 1629 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatMFFDRegisterDestroy(void); 1630 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatMFFDDefaultSetUmin(Mat,PetscReal); 1631 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatMFFDWPSetComputeNormU(Mat,PetscTruth); 1632 1633 1634 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT PetscViewerMathematicaPutMatrix(PetscViewer, PetscInt, PetscInt, PetscReal *); 1635 EXTERN PetscErrorCode PETSCMAT_DLLEXPORT PetscViewerMathematicaPutCSRMatrix(PetscViewer, PetscInt, PetscInt, PetscInt *, PetscInt *, PetscReal *); 1636 1637 PETSC_EXTERN_CXX_END 1638 #endif 1639