1 /* 2 Include file for the matrix component of PETSc 3 */ 4 #ifndef PETSCMAT_H 5 #define PETSCMAT_H 6 7 #include <petscvec.h> 8 9 /* SUBMANSEC = Mat */ 10 11 /*S 12 Mat - Abstract PETSc matrix object used to manage all linear operators in PETSc, even those without 13 an explicit sparse representation (such as matrix-free operators) 14 15 Level: beginner 16 17 Note: 18 See [](doc_matrix), [](ch_matrices) and `MatType` for available matrix types 19 20 .seealso: [](doc_matrix), [](ch_matrices), `MatCreate()`, `MatType`, `MatSetType()`, `MatDestroy()` 21 S*/ 22 typedef struct _p_Mat *Mat; 23 24 /*J 25 MatType - String with the name of a PETSc matrix type 26 27 Level: beginner 28 29 Note: 30 [](doc_matrix) for a table of available matrix types 31 32 .seealso: [](doc_matrix), [](ch_matrices), `MatSetType()`, `Mat`, `MatSolverType`, `MatRegister()` 33 J*/ 34 typedef const char *MatType; 35 #define MATSAME "same" 36 #define MATMAIJ "maij" 37 #define MATSEQMAIJ "seqmaij" 38 #define MATMPIMAIJ "mpimaij" 39 #define MATKAIJ "kaij" 40 #define MATSEQKAIJ "seqkaij" 41 #define MATMPIKAIJ "mpikaij" 42 #define MATIS "is" 43 #define MATAIJ "aij" 44 #define MATSEQAIJ "seqaij" 45 #define MATMPIAIJ "mpiaij" 46 #define MATAIJCRL "aijcrl" 47 #define MATSEQAIJCRL "seqaijcrl" 48 #define MATMPIAIJCRL "mpiaijcrl" 49 #define MATAIJCUSPARSE "aijcusparse" 50 #define MATSEQAIJCUSPARSE "seqaijcusparse" 51 #define MATMPIAIJCUSPARSE "mpiaijcusparse" 52 #define MATAIJHIPSPARSE "aijhipsparse" 53 #define MATSEQAIJHIPSPARSE "seqaijhipsparse" 54 #define MATMPIAIJHIPSPARSE "mpiaijhipsparse" 55 #define MATAIJKOKKOS "aijkokkos" 56 #define MATSEQAIJKOKKOS "seqaijkokkos" 57 #define MATMPIAIJKOKKOS "mpiaijkokkos" 58 #define MATAIJVIENNACL "aijviennacl" 59 #define MATSEQAIJVIENNACL "seqaijviennacl" 60 #define MATMPIAIJVIENNACL "mpiaijviennacl" 61 #define MATAIJPERM "aijperm" 62 #define MATSEQAIJPERM "seqaijperm" 63 #define MATMPIAIJPERM "mpiaijperm" 64 #define MATAIJSELL "aijsell" 65 #define MATSEQAIJSELL "seqaijsell" 66 #define MATMPIAIJSELL "mpiaijsell" 67 #define MATAIJMKL "aijmkl" 68 #define MATSEQAIJMKL "seqaijmkl" 69 #define MATMPIAIJMKL "mpiaijmkl" 70 #define MATBAIJMKL "baijmkl" 71 #define MATSEQBAIJMKL "seqbaijmkl" 72 #define MATMPIBAIJMKL "mpibaijmkl" 73 #define MATSHELL "shell" 74 #define MATCENTERING "centering" 75 #define MATDENSE "dense" 76 #define MATDENSECUDA "densecuda" 77 #define MATDENSEHIP "densehip" 78 #define MATSEQDENSE "seqdense" 79 #define MATSEQDENSECUDA "seqdensecuda" 80 #define MATSEQDENSEHIP "seqdensehip" 81 #define MATMPIDENSE "mpidense" 82 #define MATMPIDENSECUDA "mpidensecuda" 83 #define MATMPIDENSEHIP "mpidensehip" 84 #define MATELEMENTAL "elemental" 85 #define MATSCALAPACK "scalapack" 86 #define MATBAIJ "baij" 87 #define MATSEQBAIJ "seqbaij" 88 #define MATMPIBAIJ "mpibaij" 89 #define MATMPIADJ "mpiadj" 90 #define MATSBAIJ "sbaij" 91 #define MATSEQSBAIJ "seqsbaij" 92 #define MATMPISBAIJ "mpisbaij" 93 #define MATMFFD "mffd" 94 #define MATNORMAL "normal" 95 #define MATNORMALHERMITIAN "normalh" 96 #define MATLRC "lrc" 97 #define MATSCATTER "scatter" 98 #define MATBLOCKMAT "blockmat" 99 #define MATCOMPOSITE "composite" 100 #define MATFFT "fft" 101 #define MATFFTW "fftw" 102 #define MATSEQCUFFT "seqcufft" 103 #define MATSEQHIPFFT "seqhipfft" 104 #define MATTRANSPOSEMAT PETSC_DEPRECATED_MACRO("GCC warning \"MATTRANSPOSEMAT macro is deprecated use MATTRANSPOSEVIRTUAL (since version 3.18)\"") "transpose" 105 #define MATTRANSPOSEVIRTUAL "transpose" 106 #define MATHERMITIANTRANSPOSEVIRTUAL "hermitiantranspose" 107 #define MATSCHURCOMPLEMENT "schurcomplement" 108 #define MATPYTHON "python" 109 #define MATHYPRE "hypre" 110 #define MATHYPRESTRUCT "hyprestruct" 111 #define MATHYPRESSTRUCT "hypresstruct" 112 #define MATSUBMATRIX "submatrix" 113 #define MATLOCALREF "localref" 114 #define MATNEST "nest" 115 #define MATPREALLOCATOR "preallocator" 116 #define MATSELL "sell" 117 #define MATSEQSELL "seqsell" 118 #define MATMPISELL "mpisell" 119 #define MATSELLCUDA "sellcuda" 120 #define MATSEQSELLCUDA "seqsellcuda" 121 #define MATMPISELLCUDA "mpisellcuda" 122 #define MATDUMMY "dummy" 123 #define MATLMVM "lmvm" 124 #define MATLMVMDFP "lmvmdfp" 125 #define MATLMVMBFGS "lmvmbfgs" 126 #define MATLMVMSR1 "lmvmsr1" 127 #define MATLMVMBROYDEN "lmvmbroyden" 128 #define MATLMVMBADBROYDEN "lmvmbadbroyden" 129 #define MATLMVMSYMBROYDEN "lmvmsymbroyden" 130 #define MATLMVMSYMBADBROYDEN "lmvmsymbadbroyden" 131 #define MATLMVMDIAGBROYDEN "lmvmdiagbroyden" 132 #define MATCONSTANTDIAGONAL "constantdiagonal" 133 #define MATDIAGONAL "diagonal" 134 #define MATHTOOL "htool" 135 #define MATH2OPUS "h2opus" 136 137 /*J 138 MatSolverType - String with the name of a PETSc factorization based matrix solver type. 139 140 For example: "petsc" indicates what PETSc provides, "superlu_dist" the parallel SuperLU_DIST package etc 141 142 Level: beginner 143 144 Note: 145 `MATSOLVERUMFPACK`, `MATSOLVERCHOLMOD`, `MATSOLVERKLU`, `MATSOLVERSPQR` form the SuiteSparse package; you can use `--download-suitesparse` as 146 a ./configure option to install them 147 148 .seealso: [](sec_matfactor), [](ch_matrices), `MatGetFactor()`, `PCFactorSetMatSolverType()`, `PCFactorGetMatSolverType()` 149 J*/ 150 typedef const char *MatSolverType; 151 #define MATSOLVERSUPERLU "superlu" 152 #define MATSOLVERSUPERLU_DIST "superlu_dist" 153 #define MATSOLVERSTRUMPACK "strumpack" 154 #define MATSOLVERUMFPACK "umfpack" 155 #define MATSOLVERCHOLMOD "cholmod" 156 #define MATSOLVERKLU "klu" 157 #define MATSOLVERELEMENTAL "elemental" 158 #define MATSOLVERSCALAPACK "scalapack" 159 #define MATSOLVERESSL "essl" 160 #define MATSOLVERLUSOL "lusol" 161 #define MATSOLVERMUMPS "mumps" 162 #define MATSOLVERMKL_PARDISO "mkl_pardiso" 163 #define MATSOLVERMKL_CPARDISO "mkl_cpardiso" 164 #define MATSOLVERPASTIX "pastix" 165 #define MATSOLVERMATLAB "matlab" 166 #define MATSOLVERPETSC "petsc" 167 #define MATSOLVERBAS "bas" 168 #define MATSOLVERCUSPARSE "cusparse" 169 #define MATSOLVERCUDA "cuda" 170 #define MATSOLVERHIPSPARSE "hipsparse" 171 #define MATSOLVERHIP "hip" 172 #define MATSOLVERKOKKOS "kokkos" 173 #define MATSOLVERSPQR "spqr" 174 175 /*E 176 MatFactorType - indicates what type of factorization is requested 177 178 Values: 179 + `MAT_FACTOR_LU` - LU factorization 180 . `MAT_FACTOR_CHOLESKY` - Cholesky factorization 181 . `MAT_FACTOR_ILU` - ILU factorization 182 . `MAT_FACTOR_ICC` - incomplete Cholesky factorization 183 . `MAT_FACTOR_ILUDT` - ILU factorization with drop tolerance 184 - `MAT_FACTOR_QR` - QR factorization 185 186 Level: beginner 187 188 .seealso: [](ch_matrices), `MatSolverType`, `MatGetFactor()`, `MatGetFactorAvailable()`, `MatSolverTypeRegister()` 189 E*/ 190 typedef enum { 191 MAT_FACTOR_NONE, 192 MAT_FACTOR_LU, 193 MAT_FACTOR_CHOLESKY, 194 MAT_FACTOR_ILU, 195 MAT_FACTOR_ICC, 196 MAT_FACTOR_ILUDT, 197 MAT_FACTOR_QR, 198 MAT_FACTOR_NUM_TYPES 199 } MatFactorType; 200 PETSC_EXTERN const char *const MatFactorTypes[]; 201 202 PETSC_EXTERN PetscErrorCode MatGetFactor(Mat, MatSolverType, MatFactorType, Mat *); 203 PETSC_EXTERN PetscErrorCode MatGetFactorAvailable(Mat, MatSolverType, MatFactorType, PetscBool *); 204 PETSC_EXTERN PetscErrorCode MatFactorGetCanUseOrdering(Mat, PetscBool *); 205 PETSC_DEPRECATED_FUNCTION("Use MatFactorGetCanUseOrdering() (since version 3.15)") static inline PetscErrorCode MatFactorGetUseOrdering(Mat A, PetscBool *b) 206 { 207 return MatFactorGetCanUseOrdering(A, b); 208 } 209 PETSC_EXTERN PetscErrorCode MatFactorGetSolverType(Mat, MatSolverType *); 210 PETSC_EXTERN PetscErrorCode MatGetFactorType(Mat, MatFactorType *); 211 PETSC_EXTERN PetscErrorCode MatSetFactorType(Mat, MatFactorType); 212 PETSC_EXTERN_TYPEDEF typedef PetscErrorCode (*MatSolverFunction)(Mat, MatFactorType, Mat *); 213 PETSC_EXTERN PetscErrorCode MatSolverTypeRegister(MatSolverType, MatType, MatFactorType, MatSolverFunction); 214 PETSC_EXTERN PetscErrorCode MatSolverTypeGet(MatSolverType, MatType, MatFactorType, PetscBool *, PetscBool *, MatSolverFunction *); 215 typedef MatSolverType MatSolverPackage PETSC_DEPRECATED_TYPEDEF("Use MatSolverType (since version 3.9)"); 216 PETSC_DEPRECATED_FUNCTION("Use MatSolverTypeRegister() (since version 3.9)") static inline PetscErrorCode MatSolverPackageRegister(MatSolverType stype, MatType mtype, MatFactorType ftype, MatSolverFunction f) 217 { 218 return MatSolverTypeRegister(stype, mtype, ftype, f); 219 } 220 PETSC_DEPRECATED_FUNCTION("Use MatSolverTypeGet() (since version 3.9)") static inline PetscErrorCode MatSolverPackageGet(MatSolverType stype, MatType mtype, MatFactorType ftype, PetscBool *foundmtype, PetscBool *foundstype, MatSolverFunction *f) 221 { 222 return MatSolverTypeGet(stype, mtype, ftype, foundmtype, foundstype, f); 223 } 224 225 /*E 226 MatProductType - indicates what type of matrix product is requested 227 228 Values: 229 + `MATPRODUCT_AB` - product of two matrices 230 . `MATPRODUCT_AtB` - product of the transpose of a given matrix with a matrix 231 . `MATPRODUCT_ABt` - product of a matrix with the transpose of another given matrix 232 . `MATPRODUCT_PtAP` - the triple product of the transpose of a matrix with another matrix and itself 233 . `MATPRODUCT_RARt` - the triple product of a matrix, another matrix and the transpose of the first matrix 234 - `MATPRODUCT_ABC` - the product of three matrices 235 236 Level: beginner 237 238 .seealso: [](sec_matmatproduct), [](ch_matrices), `MatProductSetType()` 239 E*/ 240 typedef enum { 241 MATPRODUCT_UNSPECIFIED = 0, 242 MATPRODUCT_AB, 243 MATPRODUCT_AtB, 244 MATPRODUCT_ABt, 245 MATPRODUCT_PtAP, 246 MATPRODUCT_RARt, 247 MATPRODUCT_ABC 248 } MatProductType; 249 PETSC_EXTERN const char *const MatProductTypes[]; 250 251 /*J 252 MatProductAlgorithm - String with the name of an algorithm for a PETSc matrix product implementation 253 254 Level: beginner 255 256 .seealso: [](sec_matmatproduct), [](ch_matrices), `MatSetType()`, `Mat`, `MatProductSetAlgorithm()`, `MatProductType` 257 J*/ 258 typedef const char *MatProductAlgorithm; 259 #define MATPRODUCTALGORITHMDEFAULT "default" 260 #define MATPRODUCTALGORITHMSORTED "sorted" 261 #define MATPRODUCTALGORITHMSCALABLE "scalable" 262 #define MATPRODUCTALGORITHMSCALABLEFAST "scalable_fast" 263 #define MATPRODUCTALGORITHMHEAP "heap" 264 #define MATPRODUCTALGORITHMBHEAP "btheap" 265 #define MATPRODUCTALGORITHMLLCONDENSED "llcondensed" 266 #define MATPRODUCTALGORITHMROWMERGE "rowmerge" 267 #define MATPRODUCTALGORITHMOUTERPRODUCT "outerproduct" 268 #define MATPRODUCTALGORITHMATB "at*b" 269 #define MATPRODUCTALGORITHMRAP "rap" 270 #define MATPRODUCTALGORITHMNONSCALABLE "nonscalable" 271 #define MATPRODUCTALGORITHMSEQMPI "seqmpi" 272 #define MATPRODUCTALGORITHMBACKEND "backend" 273 #define MATPRODUCTALGORITHMOVERLAPPING "overlapping" 274 #define MATPRODUCTALGORITHMMERGED "merged" 275 #define MATPRODUCTALGORITHMALLATONCE "allatonce" 276 #define MATPRODUCTALGORITHMALLATONCEMERGED "allatonce_merged" 277 #define MATPRODUCTALGORITHMALLGATHERV "allgatherv" 278 #define MATPRODUCTALGORITHMCYCLIC "cyclic" 279 #if defined(PETSC_HAVE_HYPRE) 280 #define MATPRODUCTALGORITHMHYPRE "hypre" 281 #endif 282 283 PETSC_EXTERN PetscErrorCode MatProductCreate(Mat, Mat, Mat, Mat *); 284 PETSC_EXTERN PetscErrorCode MatProductCreateWithMat(Mat, Mat, Mat, Mat); 285 PETSC_EXTERN PetscErrorCode MatProductSetType(Mat, MatProductType); 286 PETSC_EXTERN PetscErrorCode MatProductSetAlgorithm(Mat, MatProductAlgorithm); 287 PETSC_EXTERN PetscErrorCode MatProductSetFill(Mat, PetscReal); 288 PETSC_EXTERN PetscErrorCode MatProductSetFromOptions(Mat); 289 PETSC_EXTERN PetscErrorCode MatProductSymbolic(Mat); 290 PETSC_EXTERN PetscErrorCode MatProductNumeric(Mat); 291 PETSC_EXTERN PetscErrorCode MatProductReplaceMats(Mat, Mat, Mat, Mat); 292 PETSC_EXTERN PetscErrorCode MatProductClear(Mat); 293 PETSC_EXTERN PetscErrorCode MatProductView(Mat, PetscViewer); 294 PETSC_EXTERN PetscErrorCode MatProductGetType(Mat, MatProductType *); 295 PETSC_EXTERN PetscErrorCode MatProductGetMats(Mat, Mat *, Mat *, Mat *); 296 297 /* Logging support */ 298 #define MAT_FILE_CLASSID 1211216 /* used to indicate matrices in binary files */ 299 PETSC_EXTERN PetscClassId MAT_CLASSID; 300 PETSC_EXTERN PetscClassId MAT_COLORING_CLASSID; 301 PETSC_EXTERN PetscClassId MAT_FDCOLORING_CLASSID; 302 PETSC_EXTERN PetscClassId MAT_TRANSPOSECOLORING_CLASSID; 303 PETSC_EXTERN PetscClassId MAT_PARTITIONING_CLASSID; 304 PETSC_EXTERN PetscClassId MAT_COARSEN_CLASSID; 305 PETSC_EXTERN PetscClassId MAT_NULLSPACE_CLASSID; 306 PETSC_EXTERN PetscClassId MATMFFD_CLASSID; 307 308 /*E 309 MatReuse - Indicates if matrices obtained from a previous call to `MatCreateSubMatrices()`, `MatCreateSubMatrix()`, `MatConvert()` or several other functions 310 are to be reused to store the new matrix values. 311 312 Values: 313 + `MAT_INITIAL_MATRIX` - create a new matrix 314 . `MAT_REUSE_MATRIX` - reuse the matrix created with a previous call that used `MAT_INITIAL_MATRIX` 315 . `MAT_INPLACE_MATRIX` - replace the first input matrix with the new matrix (not applicable to all functions) 316 - `MAT_IGNORE_MATRIX` - do not create a new matrix or reuse a give matrix, just ignore that matrix argument (not applicable to all functions) 317 318 Level: beginner 319 320 .seealso: [](ch_matrices), `Mat`, `MatCreateSubMatrices()`, `MatCreateSubMatrix()`, `MatDestroyMatrices()`, `MatConvert()` 321 E*/ 322 typedef enum { 323 MAT_INITIAL_MATRIX, 324 MAT_REUSE_MATRIX, 325 MAT_IGNORE_MATRIX, 326 MAT_INPLACE_MATRIX 327 } MatReuse; 328 329 /*E 330 MatCreateSubMatrixOption - Indicates if matrices obtained from a call to `MatCreateSubMatrices()` 331 include the matrix values. Currently it is only used by `MatGetSeqNonzeroStructure()`. 332 333 Level: developer 334 335 Values: 336 + `MAT_DO_NOT_GET_VALUES` - do not copy the matrix values 337 - `MAT_GET_VALUES` - copy the matrix values 338 339 Developer Note: 340 Why is not just a boolean used for this information? 341 342 .seealso: [](ch_matrices), `Mat`, `MatDuplicateOption`, `PetscCopyMode`, `MatGetSeqNonzeroStructure()` 343 E*/ 344 typedef enum { 345 MAT_DO_NOT_GET_VALUES, 346 MAT_GET_VALUES 347 } MatCreateSubMatrixOption; 348 349 PETSC_EXTERN PetscErrorCode MatInitializePackage(void); 350 351 PETSC_EXTERN PetscErrorCode MatCreate(MPI_Comm, Mat *); 352 PETSC_EXTERN PetscErrorCode MatSetSizes(Mat, PetscInt, PetscInt, PetscInt, PetscInt); 353 PETSC_EXTERN PetscErrorCode MatSetType(Mat, MatType); 354 PETSC_EXTERN PetscErrorCode MatGetVecType(Mat, VecType *); 355 PETSC_EXTERN PetscErrorCode MatSetVecType(Mat, VecType); 356 PETSC_EXTERN PetscErrorCode MatSetFromOptions(Mat); 357 PETSC_EXTERN PetscErrorCode MatViewFromOptions(Mat, PetscObject, const char[]); 358 PETSC_EXTERN PetscErrorCode MatRegister(const char[], PetscErrorCode (*)(Mat)); 359 PETSC_EXTERN PetscErrorCode MatRegisterRootName(const char[], const char[], const char[]); 360 PETSC_EXTERN PetscErrorCode MatSetOptionsPrefix(Mat, const char[]); 361 PETSC_EXTERN PetscErrorCode MatSetOptionsPrefixFactor(Mat, const char[]); 362 PETSC_EXTERN PetscErrorCode MatAppendOptionsPrefixFactor(Mat, const char[]); 363 PETSC_EXTERN PetscErrorCode MatAppendOptionsPrefix(Mat, const char[]); 364 PETSC_EXTERN PetscErrorCode MatGetOptionsPrefix(Mat, const char *[]); 365 PETSC_EXTERN PetscErrorCode MatSetErrorIfFailure(Mat, PetscBool); 366 367 PETSC_EXTERN PetscFunctionList MatList; 368 PETSC_EXTERN PetscFunctionList MatColoringList; 369 PETSC_EXTERN PetscFunctionList MatPartitioningList; 370 371 /*E 372 MatStructure - Indicates if two matrices have the same nonzero structure 373 374 Values: 375 + `SAME_NONZERO_PATTERN` - the two matrices have identical nonzero patterns 376 . `DIFFERENT_NONZERO_PATTERN` - the two matrices may have different nonzero patterns 377 . `SUBSET_NONZERO_PATTERN` - the nonzero pattern of the second matrix is a subset of the nonzero pattern of the first matrix 378 - `UNKNOWN_NONZERO_PATTERN` - there is no known relationship between the nonzero patterns. In this case the implementations 379 may try to detect a relationship to optimize the operation 380 381 Level: beginner 382 383 .seealso: [](ch_matrices), `Mat`, `MatCopy()`, `MatAXPY()`, `MatAYPX()` 384 E*/ 385 typedef enum { 386 DIFFERENT_NONZERO_PATTERN, 387 SUBSET_NONZERO_PATTERN, 388 SAME_NONZERO_PATTERN, 389 UNKNOWN_NONZERO_PATTERN 390 } MatStructure; 391 PETSC_EXTERN const char *const MatStructures[]; 392 393 #if defined PETSC_HAVE_MKL_SPARSE 394 PETSC_EXTERN PetscErrorCode MatCreateSeqAIJMKL(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *); 395 PETSC_EXTERN PetscErrorCode MatCreateMPIAIJMKL(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *); 396 PETSC_EXTERN PetscErrorCode MatCreateBAIJMKL(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *); 397 PETSC_EXTERN PetscErrorCode MatCreateSeqBAIJMKL(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *); 398 #endif 399 400 PETSC_EXTERN PetscErrorCode MatCreateSeqSELL(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *); 401 PETSC_EXTERN PetscErrorCode MatCreateSELL(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *); 402 PETSC_EXTERN PetscErrorCode MatSeqSELLSetPreallocation(Mat, PetscInt, const PetscInt[]); 403 PETSC_EXTERN PetscErrorCode MatMPISELLSetPreallocation(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[]); 404 PETSC_EXTERN PetscErrorCode MatSeqSELLGetFillRatio(Mat, PetscReal *); 405 PETSC_EXTERN PetscErrorCode MatSeqSELLGetMaxSliceWidth(Mat, PetscInt *); 406 PETSC_EXTERN PetscErrorCode MatSeqSELLGetAvgSliceWidth(Mat, PetscReal *); 407 PETSC_EXTERN PetscErrorCode MatSeqSELLSetSliceHeight(Mat, PetscInt); 408 PETSC_EXTERN PetscErrorCode MatSeqSELLGetVarSliceSize(Mat, PetscReal *); 409 410 PETSC_EXTERN PetscErrorCode MatCreateSeqDense(MPI_Comm, PetscInt, PetscInt, PetscScalar[], Mat *); 411 PETSC_EXTERN PetscErrorCode MatCreateDense(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscScalar[], Mat *); 412 PETSC_EXTERN PetscErrorCode MatCreateSeqAIJ(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *); 413 PETSC_EXTERN PetscErrorCode MatCreateAIJ(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *); 414 PETSC_EXTERN PetscErrorCode MatCreateMPIAIJWithArrays(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[], Mat *); 415 PETSC_EXTERN PetscErrorCode MatUpdateMPIAIJWithArrays(Mat, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[]); 416 PETSC_EXTERN PetscErrorCode MatUpdateMPIAIJWithArray(Mat, const PetscScalar[]); 417 PETSC_EXTERN PetscErrorCode MatCreateMPIAIJWithSplitArrays(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt[], PetscInt[], PetscScalar[], PetscInt[], PetscInt[], PetscScalar[], Mat *); 418 PETSC_EXTERN PetscErrorCode MatCreateMPIAIJWithSeqAIJ(MPI_Comm, Mat, Mat, const PetscInt[], Mat *); 419 420 PETSC_EXTERN PetscErrorCode MatCreateSeqBAIJ(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *); 421 PETSC_EXTERN PetscErrorCode MatCreateBAIJ(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *); 422 PETSC_EXTERN PetscErrorCode MatCreateMPIBAIJWithArrays(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[], Mat *); 423 424 PETSC_EXTERN PetscErrorCode MatSetPreallocationCOO(Mat, PetscCount, PetscInt[], PetscInt[]); 425 PETSC_EXTERN PetscErrorCode MatSetPreallocationCOOLocal(Mat, PetscCount, PetscInt[], PetscInt[]); 426 PETSC_EXTERN PetscErrorCode MatSetValuesCOO(Mat, const PetscScalar[], InsertMode); 427 428 PETSC_EXTERN PetscErrorCode MatCreateMPIAdj(MPI_Comm, PetscInt, PetscInt, PetscInt[], PetscInt[], PetscInt[], Mat *); 429 PETSC_EXTERN PetscErrorCode MatCreateSeqSBAIJ(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *); 430 431 PETSC_EXTERN PetscErrorCode MatCreateSBAIJ(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *); 432 PETSC_EXTERN PetscErrorCode MatCreateMPISBAIJWithArrays(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[], Mat *); 433 PETSC_EXTERN PetscErrorCode MatSeqSBAIJSetPreallocationCSR(Mat, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[]); 434 PETSC_EXTERN PetscErrorCode MatMPISBAIJSetPreallocationCSR(Mat, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[]); 435 PETSC_EXTERN PetscErrorCode MatXAIJSetPreallocation(Mat, PetscInt, const PetscInt[], const PetscInt[], const PetscInt[], const PetscInt[]); 436 437 PETSC_EXTERN PetscErrorCode MatCreateShell(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, void *, Mat *); 438 PETSC_EXTERN PetscErrorCode MatCreateCentering(MPI_Comm, PetscInt, PetscInt, Mat *); 439 PETSC_EXTERN PetscErrorCode MatCreateNormal(Mat, Mat *); 440 PETSC_EXTERN PetscErrorCode MatCreateNormalHermitian(Mat, Mat *); 441 PETSC_EXTERN PetscErrorCode MatCreateLRC(Mat, Mat, Vec, Mat, Mat *); 442 PETSC_EXTERN PetscErrorCode MatLRCGetMats(Mat, Mat *, Mat *, Vec *, Mat *); 443 PETSC_EXTERN PetscErrorCode MatCreateIS(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, ISLocalToGlobalMapping, ISLocalToGlobalMapping, Mat *); 444 PETSC_EXTERN PetscErrorCode MatCreateSeqAIJCRL(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *); 445 PETSC_EXTERN PetscErrorCode MatCreateMPIAIJCRL(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *); 446 447 PETSC_EXTERN PetscErrorCode MatCreateScatter(MPI_Comm, VecScatter, Mat *); 448 PETSC_EXTERN PetscErrorCode MatScatterSetVecScatter(Mat, VecScatter); 449 PETSC_EXTERN PetscErrorCode MatScatterGetVecScatter(Mat, VecScatter *); 450 PETSC_EXTERN PetscErrorCode MatCreateBlockMat(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt *, Mat *); 451 PETSC_EXTERN PetscErrorCode MatCompositeAddMat(Mat, Mat); 452 PETSC_EXTERN PetscErrorCode MatCompositeMerge(Mat); 453 typedef enum { 454 MAT_COMPOSITE_MERGE_RIGHT, 455 MAT_COMPOSITE_MERGE_LEFT 456 } MatCompositeMergeType; 457 PETSC_EXTERN PetscErrorCode MatCompositeSetMergeType(Mat, MatCompositeMergeType); 458 PETSC_EXTERN PetscErrorCode MatCreateComposite(MPI_Comm, PetscInt, const Mat *, Mat *); 459 typedef enum { 460 MAT_COMPOSITE_ADDITIVE, 461 MAT_COMPOSITE_MULTIPLICATIVE 462 } MatCompositeType; 463 PETSC_EXTERN PetscErrorCode MatCompositeSetType(Mat, MatCompositeType); 464 PETSC_EXTERN PetscErrorCode MatCompositeGetType(Mat, MatCompositeType *); 465 PETSC_EXTERN PetscErrorCode MatCompositeSetMatStructure(Mat, MatStructure); 466 PETSC_EXTERN PetscErrorCode MatCompositeGetMatStructure(Mat, MatStructure *); 467 PETSC_EXTERN PetscErrorCode MatCompositeGetNumberMat(Mat, PetscInt *); 468 PETSC_EXTERN PetscErrorCode MatCompositeGetMat(Mat, PetscInt, Mat *); 469 PETSC_EXTERN PetscErrorCode MatCompositeSetScalings(Mat, const PetscScalar *); 470 471 PETSC_EXTERN PetscErrorCode MatCreateFFT(MPI_Comm, PetscInt, const PetscInt[], MatType, Mat *); 472 PETSC_EXTERN PetscErrorCode MatCreateSeqCUFFT(MPI_Comm, PetscInt, const PetscInt[], Mat *); 473 474 PETSC_EXTERN PetscErrorCode MatCreateTranspose(Mat, Mat *); 475 PETSC_EXTERN PetscErrorCode MatTransposeGetMat(Mat, Mat *); 476 PETSC_EXTERN PetscErrorCode MatCreateHermitianTranspose(Mat, Mat *); 477 PETSC_EXTERN PetscErrorCode MatHermitianTransposeGetMat(Mat, Mat *); 478 PETSC_EXTERN PetscErrorCode MatNormalGetMat(Mat, Mat *); 479 PETSC_EXTERN PetscErrorCode MatNormalHermitianGetMat(Mat, Mat *); 480 PETSC_EXTERN PetscErrorCode MatCreateSubMatrixVirtual(Mat, IS, IS, Mat *); 481 PETSC_EXTERN PetscErrorCode MatSubMatrixVirtualUpdate(Mat, Mat, IS, IS); 482 PETSC_EXTERN PetscErrorCode MatCreateLocalRef(Mat, IS, IS, Mat *); 483 PETSC_EXTERN PetscErrorCode MatCreateConstantDiagonal(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscScalar, Mat *); 484 PETSC_EXTERN PetscErrorCode MatCreateDiagonal(Vec, Mat *); 485 PETSC_EXTERN PetscErrorCode MatDiagonalGetDiagonal(Mat, Vec *); 486 PETSC_EXTERN PetscErrorCode MatDiagonalRestoreDiagonal(Mat, Vec *); 487 PETSC_EXTERN PetscErrorCode MatDiagonalGetInverseDiagonal(Mat, Vec *); 488 PETSC_EXTERN PetscErrorCode MatDiagonalRestoreInverseDiagonal(Mat, Vec *); 489 490 #if defined(PETSC_HAVE_HYPRE) 491 PETSC_EXTERN PetscErrorCode MatHYPRESetPreallocation(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[]); 492 #endif 493 494 PETSC_EXTERN PetscErrorCode MatPythonSetType(Mat, const char[]); 495 PETSC_EXTERN PetscErrorCode MatPythonGetType(Mat, const char *[]); 496 497 PETSC_EXTERN PetscErrorCode MatResetPreallocation(Mat); 498 PETSC_EXTERN PetscErrorCode MatSetUp(Mat); 499 PETSC_EXTERN PetscErrorCode MatDestroy(Mat *); 500 PETSC_EXTERN PetscErrorCode MatGetNonzeroState(Mat, PetscObjectState *); 501 502 PETSC_EXTERN PetscErrorCode MatConjugate(Mat); 503 PETSC_EXTERN PetscErrorCode MatRealPart(Mat); 504 PETSC_EXTERN PetscErrorCode MatImaginaryPart(Mat); 505 PETSC_EXTERN PetscErrorCode MatGetDiagonalBlock(Mat, Mat *); 506 PETSC_EXTERN PetscErrorCode MatGetTrace(Mat, PetscScalar *); 507 PETSC_EXTERN PetscErrorCode MatInvertBlockDiagonal(Mat, const PetscScalar **); 508 PETSC_EXTERN PetscErrorCode MatInvertVariableBlockDiagonal(Mat, PetscInt, const PetscInt *, PetscScalar *); 509 PETSC_EXTERN PetscErrorCode MatInvertBlockDiagonalMat(Mat, Mat); 510 PETSC_EXTERN PetscErrorCode MatInvertVariableBlockEnvelope(Mat, MatReuse, Mat *); 511 512 PETSC_EXTERN PetscErrorCode MatSetValues(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[], const PetscScalar[], InsertMode); 513 PETSC_EXTERN PetscErrorCode MatSetValuesIS(Mat, IS, IS, const PetscScalar[], InsertMode); 514 PETSC_EXTERN PetscErrorCode MatSetValuesBlocked(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[], const PetscScalar[], InsertMode); 515 PETSC_EXTERN PetscErrorCode MatSetValuesRow(Mat, PetscInt, const PetscScalar[]); 516 PETSC_EXTERN PetscErrorCode MatSetValuesRowLocal(Mat, PetscInt, const PetscScalar[]); 517 PETSC_EXTERN PetscErrorCode MatSetValuesBatch(Mat, PetscInt, PetscInt, PetscInt[], const PetscScalar[]); 518 PETSC_EXTERN PetscErrorCode MatSetRandom(Mat, PetscRandom); 519 520 /*S 521 MatStencil - Data structure (C struct) for storing information about rows and 522 columns of a matrix as indexed on an associated grid. These are arguments to `MatSetStencil()` and `MatSetBlockStencil()` 523 524 Level: beginner 525 526 Notes: 527 The i,j, and k represent the logical coordinates over the entire grid (for 2 and 1 dimensional problems the k and j entries are ignored). 528 The c represents the the degrees of freedom at each grid point (the dof argument to `DMDASetDOF()`). If dof is 1 then this entry is ignored. 529 530 For stencil access to vectors see `DMDAVecGetArray()`, `DMDAVecGetArrayF90()`. 531 532 For staggered grids, see `DMStagStencil` 533 534 Fortran Note: 535 See `MatSetValuesStencil()` for details. 536 537 .seealso: [](ch_matrices), `Mat`, `MatSetValuesStencil()`, `MatSetStencil()`, `MatSetValuesBlockedStencil()`, `DMDAVecGetArray()`, `DMDAVecGetArrayF90()`, 538 `DMStagStencil` 539 S*/ 540 typedef struct { 541 PetscInt k, j, i, c; 542 } MatStencil; 543 544 PETSC_EXTERN PetscErrorCode MatSetValuesStencil(Mat, PetscInt, const MatStencil[], PetscInt, const MatStencil[], const PetscScalar[], InsertMode); 545 PETSC_EXTERN PetscErrorCode MatSetValuesBlockedStencil(Mat, PetscInt, const MatStencil[], PetscInt, const MatStencil[], const PetscScalar[], InsertMode); 546 PETSC_EXTERN PetscErrorCode MatSetStencil(Mat, PetscInt, const PetscInt[], const PetscInt[], PetscInt); 547 548 /*E 549 MatAssemblyType - Indicates if the process of setting values into the matrix is complete, and the matrix is ready for use 550 551 Values: 552 + `MAT_FLUSH_ASSEMBLY` - you will continue to put values into the matrix 553 - `MAT_FINAL_ASSEMBLY` - you wish to use the matrix with the values currently inserted 554 555 Level: beginner 556 557 .seealso: [](ch_matrices), `Mat`, `MatSetValues`, `MatAssemblyBegin()`, `MatAssemblyEnd()` 558 E*/ 559 typedef enum { 560 MAT_FLUSH_ASSEMBLY = 1, 561 MAT_FINAL_ASSEMBLY = 0 562 } MatAssemblyType; 563 PETSC_EXTERN PetscErrorCode MatAssemblyBegin(Mat, MatAssemblyType); 564 PETSC_EXTERN PetscErrorCode MatAssemblyEnd(Mat, MatAssemblyType); 565 PETSC_EXTERN PetscErrorCode MatAssembled(Mat, PetscBool *); 566 567 /*E 568 MatOption - Options that may be set for a matrix that indicate properties of the matrix or affect its behavior or storage 569 570 Level: beginner 571 572 Note: 573 See `MatSetOption()` for the use of the options 574 575 Developer Note: 576 Entries that are negative need not be called collectively by all processes. 577 578 .seealso: [](ch_matrices), `Mat`, `MatSetOption()` 579 E*/ 580 typedef enum { 581 MAT_OPTION_MIN = -3, 582 MAT_UNUSED_NONZERO_LOCATION_ERR = -2, 583 MAT_ROW_ORIENTED = -1, 584 MAT_SYMMETRIC = 1, 585 MAT_STRUCTURALLY_SYMMETRIC = 2, 586 MAT_FORCE_DIAGONAL_ENTRIES = 3, 587 MAT_IGNORE_OFF_PROC_ENTRIES = 4, 588 MAT_USE_HASH_TABLE = 5, 589 MAT_KEEP_NONZERO_PATTERN = 6, 590 MAT_IGNORE_ZERO_ENTRIES = 7, 591 MAT_USE_INODES = 8, 592 MAT_HERMITIAN = 9, 593 MAT_SYMMETRY_ETERNAL = 10, 594 MAT_NEW_NONZERO_LOCATION_ERR = 11, 595 MAT_IGNORE_LOWER_TRIANGULAR = 12, 596 MAT_ERROR_LOWER_TRIANGULAR = 13, 597 MAT_GETROW_UPPERTRIANGULAR = 14, 598 MAT_SPD = 15, 599 MAT_NO_OFF_PROC_ZERO_ROWS = 16, 600 MAT_NO_OFF_PROC_ENTRIES = 17, 601 MAT_NEW_NONZERO_LOCATIONS = 18, 602 MAT_NEW_NONZERO_ALLOCATION_ERR = 19, 603 MAT_SUBSET_OFF_PROC_ENTRIES = 20, 604 MAT_SUBMAT_SINGLEIS = 21, 605 MAT_STRUCTURE_ONLY = 22, 606 MAT_SORTED_FULL = 23, 607 MAT_FORM_EXPLICIT_TRANSPOSE = 24, 608 MAT_STRUCTURAL_SYMMETRY_ETERNAL = 25, 609 MAT_SPD_ETERNAL = 26, 610 MAT_OPTION_MAX = 27 611 } MatOption; 612 613 PETSC_EXTERN const char *const *MatOptions; 614 PETSC_EXTERN PetscErrorCode MatSetOption(Mat, MatOption, PetscBool); 615 PETSC_EXTERN PetscErrorCode MatGetOption(Mat, MatOption, PetscBool *); 616 PETSC_EXTERN PetscErrorCode MatPropagateSymmetryOptions(Mat, Mat); 617 PETSC_EXTERN PetscErrorCode MatGetType(Mat, MatType *); 618 619 PETSC_EXTERN PetscErrorCode MatGetValues(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[], PetscScalar[]); 620 PETSC_EXTERN PetscErrorCode MatGetRow(Mat, PetscInt, PetscInt *, const PetscInt *[], const PetscScalar *[]); 621 PETSC_EXTERN PetscErrorCode MatRestoreRow(Mat, PetscInt, PetscInt *, const PetscInt *[], const PetscScalar *[]); 622 PETSC_EXTERN PetscErrorCode MatGetRowUpperTriangular(Mat); 623 PETSC_EXTERN PetscErrorCode MatRestoreRowUpperTriangular(Mat); 624 PETSC_EXTERN PetscErrorCode MatGetColumnVector(Mat, Vec, PetscInt); 625 PETSC_EXTERN PetscErrorCode MatSeqAIJGetArray(Mat, PetscScalar *[]); 626 PETSC_EXTERN PetscErrorCode MatSeqAIJGetArrayRead(Mat, const PetscScalar *[]); 627 PETSC_EXTERN PetscErrorCode MatSeqAIJGetArrayWrite(Mat, PetscScalar *[]); 628 PETSC_EXTERN PetscErrorCode MatSeqAIJRestoreArray(Mat, PetscScalar *[]); 629 PETSC_EXTERN PetscErrorCode MatSeqAIJRestoreArrayRead(Mat, const PetscScalar *[]); 630 PETSC_EXTERN PetscErrorCode MatSeqAIJRestoreArrayWrite(Mat, PetscScalar *[]); 631 PETSC_EXTERN PetscErrorCode MatSeqAIJGetMaxRowNonzeros(Mat, PetscInt *); 632 PETSC_EXTERN PetscErrorCode MatSeqAIJSetValuesLocalFast(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[], const PetscScalar[], InsertMode); 633 PETSC_EXTERN PetscErrorCode MatSeqAIJSetType(Mat, MatType); 634 PETSC_EXTERN PetscErrorCode MatSeqAIJKron(Mat, Mat, MatReuse, Mat *); 635 PETSC_EXTERN PetscErrorCode MatSeqAIJRegister(const char[], PetscErrorCode (*)(Mat, MatType, MatReuse, Mat *)); 636 PETSC_EXTERN PetscFunctionList MatSeqAIJList; 637 PETSC_EXTERN PetscErrorCode MatSeqBAIJGetArray(Mat, PetscScalar *[]); 638 PETSC_EXTERN PetscErrorCode MatSeqBAIJRestoreArray(Mat, PetscScalar *[]); 639 PETSC_EXTERN PetscErrorCode MatSeqSBAIJGetArray(Mat, PetscScalar *[]); 640 PETSC_EXTERN PetscErrorCode MatSeqSBAIJRestoreArray(Mat, PetscScalar *[]); 641 PETSC_EXTERN PetscErrorCode MatDenseGetArray(Mat, PetscScalar *[]); 642 PETSC_EXTERN PetscErrorCode MatDenseRestoreArray(Mat, PetscScalar *[]); 643 PETSC_EXTERN PetscErrorCode MatDensePlaceArray(Mat, const PetscScalar[]); 644 PETSC_EXTERN PetscErrorCode MatDenseReplaceArray(Mat, const PetscScalar[]); 645 PETSC_EXTERN PetscErrorCode MatDenseResetArray(Mat); 646 PETSC_EXTERN PetscErrorCode MatDenseGetArrayRead(Mat, const PetscScalar *[]); 647 PETSC_EXTERN PetscErrorCode MatDenseRestoreArrayRead(Mat, const PetscScalar *[]); 648 PETSC_EXTERN PetscErrorCode MatDenseGetArrayWrite(Mat, PetscScalar *[]); 649 PETSC_EXTERN PetscErrorCode MatDenseRestoreArrayWrite(Mat, PetscScalar *[]); 650 PETSC_EXTERN PetscErrorCode MatDenseGetArrayAndMemType(Mat, PetscScalar *[], PetscMemType *); 651 PETSC_EXTERN PetscErrorCode MatDenseRestoreArrayAndMemType(Mat, PetscScalar *[]); 652 PETSC_EXTERN PetscErrorCode MatDenseGetArrayReadAndMemType(Mat, const PetscScalar *[], PetscMemType *); 653 PETSC_EXTERN PetscErrorCode MatDenseRestoreArrayReadAndMemType(Mat, const PetscScalar *[]); 654 PETSC_EXTERN PetscErrorCode MatDenseGetArrayWriteAndMemType(Mat, PetscScalar *[], PetscMemType *); 655 PETSC_EXTERN PetscErrorCode MatDenseRestoreArrayWriteAndMemType(Mat, PetscScalar *[]); 656 PETSC_EXTERN PetscErrorCode MatGetBlockSize(Mat, PetscInt *); 657 PETSC_EXTERN PetscErrorCode MatSetBlockSize(Mat, PetscInt); 658 PETSC_EXTERN PetscErrorCode MatGetBlockSizes(Mat, PetscInt *, PetscInt *); 659 PETSC_EXTERN PetscErrorCode MatSetBlockSizes(Mat, PetscInt, PetscInt); 660 PETSC_EXTERN PetscErrorCode MatSetBlockSizesFromMats(Mat, Mat, Mat); 661 PETSC_EXTERN PetscErrorCode MatSetVariableBlockSizes(Mat, PetscInt, PetscInt *); 662 PETSC_EXTERN PetscErrorCode MatGetVariableBlockSizes(Mat, PetscInt *, const PetscInt **); 663 664 PETSC_EXTERN PetscErrorCode MatDenseGetColumn(Mat, PetscInt, PetscScalar *[]); 665 PETSC_EXTERN PetscErrorCode MatDenseRestoreColumn(Mat, PetscScalar *[]); 666 PETSC_EXTERN PetscErrorCode MatDenseGetColumnVec(Mat, PetscInt, Vec *); 667 PETSC_EXTERN PetscErrorCode MatDenseRestoreColumnVec(Mat, PetscInt, Vec *); 668 PETSC_EXTERN PetscErrorCode MatDenseGetColumnVecRead(Mat, PetscInt, Vec *); 669 PETSC_EXTERN PetscErrorCode MatDenseRestoreColumnVecRead(Mat, PetscInt, Vec *); 670 PETSC_EXTERN PetscErrorCode MatDenseGetColumnVecWrite(Mat, PetscInt, Vec *); 671 PETSC_EXTERN PetscErrorCode MatDenseRestoreColumnVecWrite(Mat, PetscInt, Vec *); 672 PETSC_EXTERN PetscErrorCode MatDenseGetSubMatrix(Mat, PetscInt, PetscInt, PetscInt, PetscInt, Mat *); 673 PETSC_EXTERN PetscErrorCode MatDenseRestoreSubMatrix(Mat, Mat *); 674 675 PETSC_EXTERN PetscErrorCode MatMult(Mat, Vec, Vec); 676 PETSC_EXTERN PetscErrorCode MatMultDiagonalBlock(Mat, Vec, Vec); 677 PETSC_EXTERN PetscErrorCode MatMultAdd(Mat, Vec, Vec, Vec); 678 PETSC_EXTERN PetscErrorCode MatMultTranspose(Mat, Vec, Vec); 679 PETSC_EXTERN PetscErrorCode MatMultHermitianTranspose(Mat, Vec, Vec); 680 PETSC_EXTERN PetscErrorCode MatIsTranspose(Mat, Mat, PetscReal, PetscBool *); 681 PETSC_EXTERN PetscErrorCode MatIsHermitianTranspose(Mat, Mat, PetscReal, PetscBool *); 682 PETSC_EXTERN PetscErrorCode MatMultTransposeAdd(Mat, Vec, Vec, Vec); 683 PETSC_EXTERN PetscErrorCode MatMultHermitianTransposeAdd(Mat, Vec, Vec, Vec); 684 PETSC_EXTERN PetscErrorCode MatMatSolve(Mat, Mat, Mat); 685 PETSC_EXTERN PetscErrorCode MatMatSolveTranspose(Mat, Mat, Mat); 686 PETSC_EXTERN PetscErrorCode MatMatTransposeSolve(Mat, Mat, Mat); 687 PETSC_EXTERN PetscErrorCode MatResidual(Mat, Vec, Vec, Vec); 688 689 /*E 690 MatDuplicateOption - Indicates if a duplicated sparse matrix should have 691 its numerical values copied over or just its nonzero structure. 692 693 Values: 694 + `MAT_DO_NOT_COPY_VALUES` - Create a matrix using the same nonzero pattern as the original matrix, 695 with zeros for the numerical values 696 . `MAT_COPY_VALUES` - Create a matrix with the same nonzero pattern as the original matrix 697 and with the same numerical values. 698 - `MAT_SHARE_NONZERO_PATTERN` - Create a matrix that shares the nonzero structure with the previous matrix 699 and does not copy it, using zeros for the numerical values. The parent and 700 child matrices will share their index (i and j) arrays, and you cannot 701 insert new nonzero entries into either matrix 702 703 Level: beginner 704 705 Note: 706 Many matrix types (including `MATSEQAIJ`) do not support the `MAT_SHARE_NONZERO_PATTERN` optimization; in 707 this case the behavior is as if `MAT_DO_NOT_COPY_VALUES` has been specified. 708 709 .seealso: [](ch_matrices), `Mat`, `MatDuplicate()` 710 E*/ 711 typedef enum { 712 MAT_DO_NOT_COPY_VALUES, 713 MAT_COPY_VALUES, 714 MAT_SHARE_NONZERO_PATTERN 715 } MatDuplicateOption; 716 717 PETSC_EXTERN PetscErrorCode MatConvert(Mat, MatType, MatReuse, Mat *); 718 PETSC_EXTERN PetscErrorCode MatDuplicate(Mat, MatDuplicateOption, Mat *); 719 720 PETSC_EXTERN PetscErrorCode MatCopy(Mat, Mat, MatStructure); 721 PETSC_EXTERN PetscErrorCode MatView(Mat, PetscViewer); 722 PETSC_EXTERN PetscErrorCode MatIsSymmetric(Mat, PetscReal, PetscBool *); 723 PETSC_EXTERN PetscErrorCode MatIsStructurallySymmetric(Mat, PetscBool *); 724 PETSC_EXTERN PetscErrorCode MatIsHermitian(Mat, PetscReal, PetscBool *); 725 PETSC_EXTERN PetscErrorCode MatIsSymmetricKnown(Mat, PetscBool *, PetscBool *); 726 PETSC_EXTERN PetscErrorCode MatIsHermitianKnown(Mat, PetscBool *, PetscBool *); 727 PETSC_EXTERN PetscErrorCode MatIsStructurallySymmetricKnown(Mat, PetscBool *, PetscBool *); 728 PETSC_EXTERN PetscErrorCode MatIsSPDKnown(Mat, PetscBool *, PetscBool *); 729 PETSC_EXTERN PetscErrorCode MatMissingDiagonal(Mat, PetscBool *, PetscInt *); 730 PETSC_EXTERN PetscErrorCode MatLoad(Mat, PetscViewer); 731 732 PETSC_EXTERN PetscErrorCode MatGetRowIJ(Mat, PetscInt, PetscBool, PetscBool, PetscInt *, const PetscInt *[], const PetscInt *[], PetscBool *); 733 PETSC_EXTERN PetscErrorCode MatRestoreRowIJ(Mat, PetscInt, PetscBool, PetscBool, PetscInt *, const PetscInt *[], const PetscInt *[], PetscBool *); 734 PETSC_EXTERN PetscErrorCode MatGetColumnIJ(Mat, PetscInt, PetscBool, PetscBool, PetscInt *, const PetscInt *[], const PetscInt *[], PetscBool *); 735 PETSC_EXTERN PetscErrorCode MatRestoreColumnIJ(Mat, PetscInt, PetscBool, PetscBool, PetscInt *, const PetscInt *[], const PetscInt *[], PetscBool *); 736 737 /*S 738 MatInfo - Context of matrix information, used with `MatGetInfo()` 739 740 Level: intermediate 741 742 Fortran Note: 743 Information is stored as a double-precision array of dimension `MAT_INFO_SIZE` 744 745 .seealso: [](ch_matrices), `Mat`, `MatGetInfo()`, `MatInfoType` 746 S*/ 747 typedef struct { 748 PetscLogDouble block_size; /* block size */ 749 PetscLogDouble nz_allocated, nz_used, nz_unneeded; /* number of nonzeros */ 750 PetscLogDouble memory; /* memory allocated */ 751 PetscLogDouble assemblies; /* number of matrix assemblies called */ 752 PetscLogDouble mallocs; /* number of mallocs during MatSetValues() */ 753 PetscLogDouble fill_ratio_given, fill_ratio_needed; /* fill ratio for LU/ILU */ 754 PetscLogDouble factor_mallocs; /* number of mallocs during factorization */ 755 } MatInfo; 756 757 /*E 758 MatInfoType - Indicates if you want information about the local part of the matrix, 759 the entire parallel matrix or the maximum over all the local parts. 760 761 Values: 762 + `MAT_LOCAL` - values for each MPI process part of the matrix 763 . `MAT_GLOBAL_MAX` - maximum of each value over all MPI processes 764 - `MAT_GLOBAL_SUM` - sum of each value over all MPI processes 765 766 Level: beginner 767 768 .seealso: [](ch_matrices), `MatGetInfo()`, `MatInfo` 769 E*/ 770 typedef enum { 771 MAT_LOCAL = 1, 772 MAT_GLOBAL_MAX = 2, 773 MAT_GLOBAL_SUM = 3 774 } MatInfoType; 775 PETSC_EXTERN PetscErrorCode MatGetInfo(Mat, MatInfoType, MatInfo *); 776 PETSC_EXTERN PetscErrorCode MatGetDiagonal(Mat, Vec); 777 PETSC_EXTERN PetscErrorCode MatGetRowMax(Mat, Vec, PetscInt[]); 778 PETSC_EXTERN PetscErrorCode MatGetRowMin(Mat, Vec, PetscInt[]); 779 PETSC_EXTERN PetscErrorCode MatGetRowMaxAbs(Mat, Vec, PetscInt[]); 780 PETSC_EXTERN PetscErrorCode MatGetRowMinAbs(Mat, Vec, PetscInt[]); 781 PETSC_EXTERN PetscErrorCode MatGetRowSum(Mat, Vec); 782 PETSC_EXTERN PetscErrorCode MatTranspose(Mat, MatReuse, Mat *); 783 PETSC_EXTERN PetscErrorCode MatTransposeSymbolic(Mat, Mat *); 784 PETSC_EXTERN PetscErrorCode MatTransposeSetPrecursor(Mat, Mat); 785 PETSC_EXTERN PetscErrorCode MatHermitianTranspose(Mat, MatReuse, Mat *); 786 PETSC_EXTERN PetscErrorCode MatPermute(Mat, IS, IS, Mat *); 787 PETSC_EXTERN PetscErrorCode MatDiagonalScale(Mat, Vec, Vec); 788 PETSC_EXTERN PetscErrorCode MatDiagonalSet(Mat, Vec, InsertMode); 789 790 PETSC_EXTERN PetscErrorCode MatEqual(Mat, Mat, PetscBool *); 791 PETSC_EXTERN PetscErrorCode MatMultEqual(Mat, Mat, PetscInt, PetscBool *); 792 PETSC_EXTERN PetscErrorCode MatMultAddEqual(Mat, Mat, PetscInt, PetscBool *); 793 PETSC_EXTERN PetscErrorCode MatMultTransposeEqual(Mat, Mat, PetscInt, PetscBool *); 794 PETSC_EXTERN PetscErrorCode MatMultTransposeAddEqual(Mat, Mat, PetscInt, PetscBool *); 795 PETSC_EXTERN PetscErrorCode MatMultHermitianTransposeEqual(Mat, Mat, PetscInt, PetscBool *); 796 PETSC_EXTERN PetscErrorCode MatMultHermitianTransposeAddEqual(Mat, Mat, PetscInt, PetscBool *); 797 PETSC_EXTERN PetscErrorCode MatMatMultEqual(Mat, Mat, Mat, PetscInt, PetscBool *); 798 PETSC_EXTERN PetscErrorCode MatTransposeMatMultEqual(Mat, Mat, Mat, PetscInt, PetscBool *); 799 PETSC_EXTERN PetscErrorCode MatMatTransposeMultEqual(Mat, Mat, Mat, PetscInt, PetscBool *); 800 PETSC_EXTERN PetscErrorCode MatPtAPMultEqual(Mat, Mat, Mat, PetscInt, PetscBool *); 801 PETSC_EXTERN PetscErrorCode MatRARtMultEqual(Mat, Mat, Mat, PetscInt, PetscBool *); 802 PETSC_EXTERN PetscErrorCode MatIsLinear(Mat, PetscInt, PetscBool *); 803 804 PETSC_EXTERN PetscErrorCode MatNorm(Mat, NormType, PetscReal *); 805 PETSC_EXTERN PetscErrorCode MatGetColumnNorms(Mat, NormType, PetscReal *); 806 PETSC_EXTERN PetscErrorCode MatGetColumnSums(Mat, PetscScalar *); 807 PETSC_EXTERN PetscErrorCode MatGetColumnSumsRealPart(Mat, PetscReal *); 808 PETSC_EXTERN PetscErrorCode MatGetColumnSumsImaginaryPart(Mat, PetscReal *); 809 PETSC_EXTERN PetscErrorCode MatGetColumnMeans(Mat, PetscScalar *); 810 PETSC_EXTERN PetscErrorCode MatGetColumnMeansRealPart(Mat, PetscReal *); 811 PETSC_EXTERN PetscErrorCode MatGetColumnMeansImaginaryPart(Mat, PetscReal *); 812 PETSC_EXTERN PetscErrorCode MatGetColumnReductions(Mat, PetscInt, PetscReal *); 813 PETSC_EXTERN PetscErrorCode MatZeroEntries(Mat); 814 PETSC_EXTERN PetscErrorCode MatSetInf(Mat); 815 PETSC_EXTERN PetscErrorCode MatZeroRows(Mat, PetscInt, const PetscInt[], PetscScalar, Vec, Vec); 816 PETSC_EXTERN PetscErrorCode MatZeroRowsIS(Mat, IS, PetscScalar, Vec, Vec); 817 PETSC_EXTERN PetscErrorCode MatZeroRowsStencil(Mat, PetscInt, const MatStencil[], PetscScalar, Vec, Vec); 818 PETSC_EXTERN PetscErrorCode MatZeroRowsColumnsStencil(Mat, PetscInt, const MatStencil[], PetscScalar, Vec, Vec); 819 PETSC_EXTERN PetscErrorCode MatZeroRowsColumns(Mat, PetscInt, const PetscInt[], PetscScalar, Vec, Vec); 820 PETSC_EXTERN PetscErrorCode MatZeroRowsColumnsIS(Mat, IS, PetscScalar, Vec, Vec); 821 822 PETSC_EXTERN PetscErrorCode MatGetSize(Mat, PetscInt *, PetscInt *); 823 PETSC_EXTERN PetscErrorCode MatGetLocalSize(Mat, PetscInt *, PetscInt *); 824 PETSC_EXTERN PetscErrorCode MatGetOwnershipRange(Mat, PetscInt *, PetscInt *); 825 PETSC_EXTERN PetscErrorCode MatGetOwnershipRanges(Mat, const PetscInt **); 826 PETSC_EXTERN PetscErrorCode MatGetOwnershipRangeColumn(Mat, PetscInt *, PetscInt *); 827 PETSC_EXTERN PetscErrorCode MatGetOwnershipRangesColumn(Mat, const PetscInt **); 828 PETSC_EXTERN PetscErrorCode MatGetOwnershipIS(Mat, IS *, IS *); 829 830 PETSC_EXTERN PetscErrorCode MatCreateSubMatrices(Mat, PetscInt, const IS[], const IS[], MatReuse, Mat *[]); 831 PETSC_DEPRECATED_FUNCTION("Use MatCreateSubMatrices() (since version 3.8)") static inline PetscErrorCode MatGetSubMatrices(Mat mat, PetscInt n, const IS irow[], const IS icol[], MatReuse scall, Mat *submat[]) 832 { 833 return MatCreateSubMatrices(mat, n, irow, icol, scall, submat); 834 } 835 PETSC_EXTERN PetscErrorCode MatCreateSubMatricesMPI(Mat, PetscInt, const IS[], const IS[], MatReuse, Mat *[]); 836 PETSC_DEPRECATED_FUNCTION("Use MatCreateSubMatricesMPI() (since version 3.8)") static inline PetscErrorCode MatGetSubMatricesMPI(Mat mat, PetscInt n, const IS irow[], const IS icol[], MatReuse scall, Mat *submat[]) 837 { 838 return MatCreateSubMatricesMPI(mat, n, irow, icol, scall, submat); 839 } 840 PETSC_EXTERN PetscErrorCode MatDestroyMatrices(PetscInt, Mat *[]); 841 PETSC_EXTERN PetscErrorCode MatDestroySubMatrices(PetscInt, Mat *[]); 842 PETSC_EXTERN PetscErrorCode MatCreateSubMatrix(Mat, IS, IS, MatReuse, Mat *); 843 PETSC_DEPRECATED_FUNCTION("Use MatCreateSubMatrix() (since version 3.8)") static inline PetscErrorCode MatGetSubMatrix(Mat mat, IS isrow, IS iscol, MatReuse cll, Mat *newmat) 844 { 845 return MatCreateSubMatrix(mat, isrow, iscol, cll, newmat); 846 } 847 PETSC_EXTERN PetscErrorCode MatGetLocalSubMatrix(Mat, IS, IS, Mat *); 848 PETSC_EXTERN PetscErrorCode MatRestoreLocalSubMatrix(Mat, IS, IS, Mat *); 849 PETSC_EXTERN PetscErrorCode MatGetSeqNonzeroStructure(Mat, Mat *); 850 PETSC_EXTERN PetscErrorCode MatDestroySeqNonzeroStructure(Mat *); 851 852 PETSC_EXTERN PetscErrorCode MatCreateMPIAIJSumSeqAIJ(MPI_Comm, Mat, PetscInt, PetscInt, MatReuse, Mat *); 853 PETSC_EXTERN PetscErrorCode MatCreateMPIAIJSumSeqAIJSymbolic(MPI_Comm, Mat, PetscInt, PetscInt, Mat *); 854 PETSC_EXTERN PetscErrorCode MatCreateMPIAIJSumSeqAIJNumeric(Mat, Mat); 855 PETSC_EXTERN PetscErrorCode MatMPIAIJGetLocalMat(Mat, MatReuse, Mat *); 856 PETSC_EXTERN PetscErrorCode MatAIJGetLocalMat(Mat, Mat *); 857 PETSC_EXTERN PetscErrorCode MatMPIAIJGetLocalMatCondensed(Mat, MatReuse, IS *, IS *, Mat *); 858 PETSC_EXTERN PetscErrorCode MatMPIAIJGetLocalMatMerge(Mat, MatReuse, IS *, Mat *); 859 PETSC_EXTERN PetscErrorCode MatMPIAIJGetNumberNonzeros(Mat, PetscCount *); 860 PETSC_EXTERN PetscErrorCode MatGetBrowsOfAcols(Mat, Mat, MatReuse, IS *, IS *, Mat *); 861 PETSC_EXTERN PetscErrorCode MatGetGhosts(Mat, PetscInt *, const PetscInt *[]); 862 863 PETSC_EXTERN PetscErrorCode MatIncreaseOverlap(Mat, PetscInt, IS[], PetscInt); 864 PETSC_EXTERN PetscErrorCode MatIncreaseOverlapSplit(Mat mat, PetscInt n, IS is[], PetscInt ov); 865 PETSC_EXTERN PetscErrorCode MatMPIAIJSetUseScalableIncreaseOverlap(Mat, PetscBool); 866 867 PETSC_EXTERN PetscErrorCode MatMatMult(Mat, Mat, MatReuse, PetscReal, Mat *); 868 869 PETSC_EXTERN PetscErrorCode MatMatMatMult(Mat, Mat, Mat, MatReuse, PetscReal, Mat *); 870 PETSC_EXTERN PetscErrorCode MatGalerkin(Mat, Mat, Mat, MatReuse, PetscReal, Mat *); 871 872 PETSC_EXTERN PetscErrorCode MatPtAP(Mat, Mat, MatReuse, PetscReal, Mat *); 873 PETSC_EXTERN PetscErrorCode MatRARt(Mat, Mat, MatReuse, PetscReal, Mat *); 874 875 PETSC_EXTERN PetscErrorCode MatTransposeMatMult(Mat, Mat, MatReuse, PetscReal, Mat *); 876 PETSC_EXTERN PetscErrorCode MatMatTransposeMult(Mat, Mat, MatReuse, PetscReal, Mat *); 877 878 PETSC_EXTERN PetscErrorCode MatAXPY(Mat, PetscScalar, Mat, MatStructure); 879 PETSC_EXTERN PetscErrorCode MatAYPX(Mat, PetscScalar, Mat, MatStructure); 880 881 PETSC_EXTERN PetscErrorCode MatScale(Mat, PetscScalar); 882 PETSC_EXTERN PetscErrorCode MatShift(Mat, PetscScalar); 883 884 PETSC_EXTERN PetscErrorCode MatSetLocalToGlobalMapping(Mat, ISLocalToGlobalMapping, ISLocalToGlobalMapping); 885 PETSC_EXTERN PetscErrorCode MatGetLocalToGlobalMapping(Mat, ISLocalToGlobalMapping *, ISLocalToGlobalMapping *); 886 PETSC_EXTERN PetscErrorCode MatGetLayouts(Mat, PetscLayout *, PetscLayout *); 887 PETSC_EXTERN PetscErrorCode MatSetLayouts(Mat, PetscLayout, PetscLayout); 888 PETSC_EXTERN PetscErrorCode MatZeroRowsLocal(Mat, PetscInt, const PetscInt[], PetscScalar, Vec, Vec); 889 PETSC_EXTERN PetscErrorCode MatZeroRowsLocalIS(Mat, IS, PetscScalar, Vec, Vec); 890 PETSC_EXTERN PetscErrorCode MatZeroRowsColumnsLocal(Mat, PetscInt, const PetscInt[], PetscScalar, Vec, Vec); 891 PETSC_EXTERN PetscErrorCode MatZeroRowsColumnsLocalIS(Mat, IS, PetscScalar, Vec, Vec); 892 PETSC_EXTERN PetscErrorCode MatGetValuesLocal(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[], PetscScalar[]); 893 PETSC_EXTERN PetscErrorCode MatSetValuesLocal(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[], const PetscScalar[], InsertMode); 894 PETSC_EXTERN PetscErrorCode MatSetValuesBlockedLocal(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[], const PetscScalar[], InsertMode); 895 896 PETSC_EXTERN PetscErrorCode MatStashSetInitialSize(Mat, PetscInt, PetscInt); 897 PETSC_EXTERN PetscErrorCode MatStashGetInfo(Mat, PetscInt *, PetscInt *, PetscInt *, PetscInt *); 898 899 PETSC_EXTERN PetscErrorCode MatInterpolate(Mat, Vec, Vec); 900 PETSC_EXTERN PetscErrorCode MatInterpolateAdd(Mat, Vec, Vec, Vec); 901 PETSC_EXTERN PetscErrorCode MatRestrict(Mat, Vec, Vec); 902 PETSC_EXTERN PetscErrorCode MatMatInterpolate(Mat, Mat, Mat *); 903 PETSC_EXTERN PetscErrorCode MatMatInterpolateAdd(Mat, Mat, Mat, Mat *); 904 PETSC_EXTERN PetscErrorCode MatMatRestrict(Mat, Mat, Mat *); 905 PETSC_EXTERN PetscErrorCode MatCreateVecs(Mat, Vec *, Vec *); 906 PETSC_DEPRECATED_FUNCTION("Use MatCreateVecs() (since version 3.6)") static inline PetscErrorCode MatGetVecs(Mat mat, Vec *x, Vec *y) 907 { 908 return MatCreateVecs(mat, x, y); 909 } 910 PETSC_EXTERN PetscErrorCode MatCreateRedundantMatrix(Mat, PetscInt, MPI_Comm, MatReuse, Mat *); 911 PETSC_EXTERN PetscErrorCode MatGetMultiProcBlock(Mat, MPI_Comm, MatReuse, Mat *); 912 PETSC_EXTERN PetscErrorCode MatFindZeroDiagonals(Mat, IS *); 913 PETSC_EXTERN PetscErrorCode MatFindOffBlockDiagonalEntries(Mat, IS *); 914 PETSC_EXTERN PetscErrorCode MatCreateMPIMatConcatenateSeqMat(MPI_Comm, Mat, PetscInt, MatReuse, Mat *); 915 916 /*MC 917 MatSetValue - Set a single entry into a matrix. 918 919 This value may be cached, so `MatAssemblyBegin()` and `MatAssemblyEnd()` 920 MUST be called after all calls to `MatSetValue()` have been completed. 921 922 Synopsis: 923 #include <petscmat.h> 924 PetscErrorCode MatSetValue(Mat m,PetscInt i,PetscInt j,PetscScalar va,InsertMode mode) 925 926 Not Collective 927 928 Input Parameters: 929 + m - the matrix 930 . i - the row location of the entry 931 . j - the column location of the entry 932 . va - the value to insert 933 - mode - either `INSERT_VALUES` or `ADD_VALUES` 934 935 Level: beginner 936 937 Note: 938 For efficiency one should use `MatSetValues()` and set several values simultaneously. 939 940 .seealso: [](ch_matrices), `Mat`, `MatAssemblyBegin()`, `MatAssemblyEnd`, `InsertMode`, `MatGetValue()`, `MatSetValues()`, 941 `MatSetValueLocal()`, `MatSetValuesLocal()` 942 M*/ 943 static inline PetscErrorCode MatSetValue(Mat m, PetscInt i, PetscInt j, PetscScalar va, InsertMode mode) 944 { 945 return MatSetValues(m, 1, &i, 1, &j, &va, mode); 946 } 947 948 /*@C 949 MatGetValue - Gets a single value from a matrix 950 951 Not Collective; can only return a value owned by the given process 952 953 Input Parameters: 954 + mat - the matrix 955 . row - the row location of the entry 956 - col - the column location of the entry 957 958 Output Parameter: 959 . va - the value 960 961 Level: advanced 962 963 Notes: 964 The matrix must have been assembled with `MatAssemblyBegin()` and `MatAssemblyEnd` before this call 965 966 For efficiency one should use `MatGetValues()` and get several values simultaneously. 967 968 See notes for `MatGetValues()`. 969 970 .seealso: [](ch_matrices), `Mat`, `MatAssemblyBegin()`, `MatAssemblyEnd`, `MatSetValue()`, `MatGetValueLocal()`, `MatGetValues()` 971 @*/ 972 static inline PetscErrorCode MatGetValue(Mat mat, PetscInt row, PetscInt col, PetscScalar *va) 973 { 974 return MatGetValues(mat, 1, &row, 1, &col, va); 975 } 976 977 /*MC 978 MatSetValueLocal - Inserts or adds a single value into a matrix, using a local numbering of the nodes. 979 980 Not Collective 981 982 Input Parameters: 983 + m - the matrix 984 . i - the row location of the entry 985 . j - the column location of the entry 986 . va - the value to insert 987 - mode - either `INSERT_VALUES` or `ADD_VALUES` 988 989 Level: intermediate 990 991 Notes: 992 For efficiency one should use `MatSetValuesLocal()` and set several values simultaneously. 993 994 See notes for `MatSetValuesLocal()` for additional information on when and how this function can be used. 995 996 .seealso: [](ch_matrices), `MatSetValue()`, `MatSetValuesLocal()` 997 M*/ 998 static inline PetscErrorCode MatSetValueLocal(Mat m, PetscInt i, PetscInt j, PetscScalar va, InsertMode mode) 999 { 1000 return MatSetValuesLocal(m, 1, &i, 1, &j, &va, mode); 1001 } 1002 1003 /*MC 1004 MatPreallocateBegin - Begins the block of code that will count the number of nonzeros per 1005 row in a matrix providing the data that one can use to correctly preallocate the matrix. 1006 1007 Synopsis: 1008 #include <petscmat.h> 1009 PetscErrorCode MatPreallocateBegin(MPI_Comm comm, PetscInt nrows, PetscInt ncols, PetscInt *dnz, PetscInt *onz) 1010 1011 Collective 1012 1013 Input Parameters: 1014 + comm - the communicator that will share the eventually allocated matrix 1015 . nrows - the number of LOCAL rows in the matrix 1016 - ncols - the number of LOCAL columns in the matrix 1017 1018 Output Parameters: 1019 + dnz - the array that will be passed to the matrix preallocation routines 1020 - onz - the other array passed to the matrix preallocation routines 1021 1022 Level: deprecated (since v3.19) 1023 1024 Notes: 1025 This routine is no longer needed since assembling matrices without explicit preallocation will not be slower than 1026 the use of this routine 1027 1028 This is a macro that handles its own error checking, it does not return an error code. 1029 1030 Do not malloc or free `dnz` and `onz`, that is handled internally by these routines 1031 1032 Developer Note: 1033 This is a MACRO not a function because it has a leading { that is closed by `PetscPreallocateFinalize()`. 1034 1035 .seealso: [](ch_matrices), `MatPreallocateEnd()`, `MatPreallocateSet()`, `MatPreallocateSymmetricSetBlock()`, `MatPreallocateSetLocal()`, 1036 `MatPreallocateSymmetricSetLocalBlock()` 1037 M*/ 1038 #define MatPreallocateBegin(comm, nrows, ncols, dnz, onz) \ 1039 do { \ 1040 PetscInt __nrows = (nrows), __ncols = (ncols), __rstart, __end = 0; \ 1041 PetscInt PETSC_UNUSED __start; \ 1042 PetscCall(PetscCalloc2(__nrows, &(dnz), __nrows, &(onz))); \ 1043 PetscCallMPI(MPI_Scan(&__ncols, &__end, 1, MPIU_INT, MPI_SUM, comm)); \ 1044 __start = __end - __ncols; \ 1045 (void)__start; \ 1046 PetscCallMPI(MPI_Scan(&__nrows, &__rstart, 1, MPIU_INT, MPI_SUM, comm)); \ 1047 __rstart -= __nrows 1048 1049 #define MatPreallocateInitialize(...) PETSC_DEPRECATED_MACRO("GCC warning \"Use MatPreallocateBegin() (since version 3.18)\"") MatPreallocateBegin(__VA_ARGS__) 1050 1051 /*MC 1052 MatPreallocateSetLocal - Indicates the locations (rows and columns) in the matrix where nonzeros will be 1053 inserted using a local number of the rows and columns 1054 1055 Synopsis: 1056 #include <petscmat.h> 1057 PetscErrorCode MatPreallocateSetLocal(ISLocalToGlobalMappping map,PetscInt nrows, PetscInt *rows,PetscInt ncols, PetscInt *cols,PetscInt *dnz, PetscInt *onz) 1058 1059 Not Collective 1060 1061 Input Parameters: 1062 + map - the row mapping from local numbering to global numbering 1063 . nrows - the number of rows indicated 1064 . rows - the indices of the rows 1065 . cmap - the column mapping from local to global numbering 1066 . ncols - the number of columns in the matrix 1067 . cols - the columns indicated 1068 . dnz - the array that will be passed to the matrix preallocation routines 1069 - onz - the other array passed to the matrix preallocation routines 1070 1071 Level: deprecated (since v3.19) 1072 1073 Notes: 1074 This routine is no longer needed since assembling matrices without explicit preallocation will not be slower than 1075 the use of this routine 1076 1077 Do not malloc or free `dnz` and `onz`, that is handled internally by these routines 1078 1079 .seealso: [](ch_matrices), `MatPreallocateEnd()`, `MatPreallocateSet()`, `MatPreallocateSymmetricSetBlock()` 1080 `MatPreallocateBegin()`, `MatPreallocateSymmetricSetLocalBlock()`, `MatPreallocateSetLocalRemoveDups()` 1081 M*/ 1082 #define MatPreallocateSetLocal(rmap, nrows, rows, cmap, ncols, cols, dnz, onz) \ 1083 PetscMacroReturnStandard(PetscCall(ISLocalToGlobalMappingApply(rmap, nrows, rows, rows)); PetscCall(ISLocalToGlobalMappingApply(cmap, ncols, cols, cols)); for (PetscInt __l = 0; __l < nrows; __l++) PetscCall(MatPreallocateSet((rows)[__l], ncols, cols, dnz, onz));) 1084 1085 /*MC 1086 MatPreallocateSetLocalRemoveDups - Indicates the locations (rows and columns) in the matrix where nonzeros will be 1087 inserted using a local number of the rows and columns. This version removes any duplicate columns in cols 1088 1089 Synopsis: 1090 #include <petscmat.h> 1091 PetscErrorCode MatPreallocateSetLocalRemoveDups(ISLocalToGlobalMappping map,PetscInt nrows, PetscInt *rows,PetscInt ncols, PetscInt *cols,PetscInt *dnz, PetscInt *onz) 1092 1093 Not Collective 1094 1095 Input Parameters: 1096 + map - the row mapping from local numbering to global numbering 1097 . nrows - the number of rows indicated 1098 . rows - the indices of the rows (these values are mapped to the global values) 1099 . cmap - the column mapping from local to global numbering 1100 . ncols - the number of columns in the matrix (this value will be changed if duplicate columns are found) 1101 . cols - the columns indicated (these values are mapped to the global values, they are then sorted and duplicates removed) 1102 . dnz - the array that will be passed to the matrix preallocation routines 1103 - onz - the other array passed to the matrix preallocation routines 1104 1105 Level: deprecated (since v3.19) 1106 1107 Notes: 1108 This routine is no longer needed since assembling matrices without explicit preallocation will not be slower than 1109 the use of this routine 1110 1111 Do not malloc or free `dnz` and `onz`, that is handled internally by these routines 1112 1113 .seealso: [](ch_matrices), `MatPreallocateEnd()`, `MatPreallocateSet()`, `MatPreallocateSymmetricSetBlock()` 1114 `MatPreallocateBegin()`, `MatPreallocateSymmetricSetLocalBlock()`, `MatPreallocateSetLocal()` 1115 M*/ 1116 #define MatPreallocateSetLocalRemoveDups(rmap, nrows, rows, cmap, ncols, cols, dnz, onz) \ 1117 PetscMacroReturnStandard(PetscCall(ISLocalToGlobalMappingApply(rmap, nrows, rows, rows)); PetscCall(ISLocalToGlobalMappingApply(cmap, ncols, cols, cols)); PetscCall(PetscSortRemoveDupsInt(&ncols, cols)); for (PetscInt __l = 0; __l < nrows; __l++) PetscCall(MatPreallocateSet((rows)[__l], ncols, cols, dnz, onz));) 1118 1119 /*MC 1120 MatPreallocateSetLocalBlock - Indicates the locations (rows and columns) in the matrix where nonzeros will be 1121 inserted using a local number of the rows and columns 1122 1123 Synopsis: 1124 #include <petscmat.h> 1125 PetscErrorCode MatPreallocateSetLocalBlock(ISLocalToGlobalMappping map,PetscInt nrows, PetscInt *rows,PetscInt ncols, PetscInt *cols,PetscInt *dnz, PetscInt *onz) 1126 1127 Not Collective 1128 1129 Input Parameters: 1130 + map - the row mapping from local numbering to global numbering 1131 . nrows - the number of rows indicated 1132 . rows - the indices of the rows 1133 . cmap - the column mapping from local to global numbering 1134 . ncols - the number of columns in the matrix 1135 . cols - the columns indicated 1136 . dnz - the array that will be passed to the matrix preallocation routines 1137 - onz - the other array passed to the matrix preallocation routines 1138 1139 Level: deprecated (since v3.19) 1140 1141 Notes: 1142 This routine is no longer needed since assembling matrices without explicit preallocation will not be slower than 1143 the use of this routine 1144 1145 Do not malloc or free `dnz` and `onz`, that is handled internally by these routines 1146 1147 .seealso: [](ch_matrices), `MatPreallocateEnd()`, `MatPreallocateSet()`, `MatPreallocateSymmetricSetBlock()` 1148 `MatPreallocateBegin()`, `MatPreallocateSymmetricSetLocalBlock()` 1149 M*/ 1150 #define MatPreallocateSetLocalBlock(rmap, nrows, rows, cmap, ncols, cols, dnz, onz) \ 1151 PetscMacroReturnStandard(PetscCall(ISLocalToGlobalMappingApplyBlock(rmap, nrows, rows, rows)); PetscCall(ISLocalToGlobalMappingApplyBlock(cmap, ncols, cols, cols)); for (PetscInt __l = 0; __l < nrows; __l++) PetscCall(MatPreallocateSet((rows)[__l], ncols, cols, dnz, onz));) 1152 1153 /*MC 1154 MatPreallocateSymmetricSetLocalBlock - Indicates the locations (rows and columns) in the matrix where nonzeros will be 1155 inserted using a local number of the rows and columns 1156 1157 Synopsis: 1158 #include <petscmat.h> 1159 PetscErrorCode MatPreallocateSymmetricSetLocalBlock(ISLocalToGlobalMappping map,PetscInt nrows, PetscInt *rows,PetscInt ncols, PetscInt *cols,PetscInt *dnz, PetscInt *onz) 1160 1161 Not Collective 1162 1163 Input Parameters: 1164 + map - the mapping between local numbering and global numbering 1165 . nrows - the number of rows indicated 1166 . rows - the indices of the rows 1167 . ncols - the number of columns in the matrix 1168 . cols - the columns indicated 1169 . dnz - the array that will be passed to the matrix preallocation routines 1170 - onz - the other array passed to the matrix preallocation routines 1171 1172 Level: deprecated (since v3.19) 1173 1174 Notes: 1175 This routine is no longer needed since assembling matrices without explicit preallocation will not be slower than 1176 the use of this routine 1177 1178 Do not malloc or free `dnz` and `onz` that is handled internally by these routines 1179 1180 .seealso: [](ch_matrices), `MatPreallocateEnd()`, `MatPreallocateSet()` 1181 `MatPreallocateBegin()`, `MatPreallocateSetLocal()` 1182 M*/ 1183 #define MatPreallocateSymmetricSetLocalBlock(map, nrows, rows, ncols, cols, dnz, onz) \ 1184 PetscMacroReturnStandard(PetscCall(ISLocalToGlobalMappingApplyBlock(map, nrows, rows, rows)); PetscCall(ISLocalToGlobalMappingApplyBlock(map, ncols, cols, cols)); for (PetscInt __l = 0; __l < nrows; __l++) PetscCall(MatPreallocateSymmetricSetBlock((rows)[__l], ncols, cols, dnz, onz));) 1185 1186 /*MC 1187 MatPreallocateSet - Indicates the locations (rows and columns) in the matrix where nonzeros will be 1188 inserted using a local number of the rows and columns 1189 1190 Synopsis: 1191 #include <petscmat.h> 1192 PetscErrorCode MatPreallocateSet(PetscInt nrows, PetscInt *rows,PetscInt ncols, PetscInt *cols,PetscInt *dnz, PetscInt *onz) 1193 1194 Not Collective 1195 1196 Input Parameters: 1197 + row - the row 1198 . ncols - the number of columns in the matrix 1199 - cols - the columns indicated 1200 1201 Output Parameters: 1202 + dnz - the array that will be passed to the matrix preallocation routines 1203 - onz - the other array passed to the matrix preallocation routines 1204 1205 Level: deprecated (since v3.19) 1206 1207 Notes: 1208 This routine is no longer needed since assembling matrices without explicit preallocation will not be slower than 1209 the use of this routine 1210 1211 Do not malloc or free `dnz` and `onz` that is handled internally by these routines 1212 1213 This is a MACRO not a function because it uses variables declared in MatPreallocateBegin(). 1214 1215 .seealso: [](ch_matrices), `MatPreallocateEnd()`, `MatPreallocateSet()`, `MatPreallocateSymmetricSetBlock()` 1216 `MatPreallocateBegin()`, `MatPreallocateSetLocal()` 1217 M*/ 1218 #define MatPreallocateSet(row, nc, cols, dnz, onz) \ 1219 PetscMacroReturnStandard(PetscCheck(row >= __rstart, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Trying to set preallocation for row %" PetscInt_FMT " less than first local row %" PetscInt_FMT, row, __rstart); PetscCheck(row < __rstart + __nrows, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Trying to set preallocation for row %" PetscInt_FMT " greater than last local row %" PetscInt_FMT, row, __rstart + __nrows - 1); for (PetscInt __i = 0; __i < nc; ++__i) { \ 1220 if ((cols)[__i] < __start || (cols)[__i] >= __end) onz[row - __rstart]++; \ 1221 else if (dnz[row - __rstart] < __ncols) dnz[row - __rstart]++; \ 1222 }) 1223 1224 /*MC 1225 MatPreallocateSymmetricSetBlock - Indicates the locations (rows and columns) in the matrix where nonzeros will be 1226 inserted using a local number of the rows and columns 1227 1228 Synopsis: 1229 #include <petscmat.h> 1230 PetscErrorCode MatPreallocateSymmetricSetBlock(PetscInt nrows, PetscInt *rows,PetscInt ncols, PetscInt *cols,PetscInt *dnz, PetscInt *onz) 1231 1232 Not Collective 1233 1234 Input Parameters: 1235 + nrows - the number of rows indicated 1236 . rows - the indices of the rows 1237 . ncols - the number of columns in the matrix 1238 . cols - the columns indicated 1239 . dnz - the array that will be passed to the matrix preallocation routines 1240 - onz - the other array passed to the matrix preallocation routines 1241 1242 Level: deprecated (since v3.19) 1243 1244 Notes: 1245 This routine is no longer needed since assembling matrices without explicit preallocation will not be slower than 1246 the use of this routine 1247 1248 Do not malloc or free `dnz` and `onz` that is handled internally by these routines 1249 1250 This is a MACRO not a function because it uses variables declared in MatPreallocateBegin(). 1251 1252 .seealso: [](ch_matrices), `MatPreallocateEnd()`, `MatPreallocateSet()`, `MatPreallocateBegin()`, 1253 `MatPreallocateSymmetricSetLocalBlock()`, `MatPreallocateSetLocal()` 1254 M*/ 1255 #define MatPreallocateSymmetricSetBlock(row, nc, cols, dnz, onz) \ 1256 PetscMacroReturnStandard(for (PetscInt __i = 0; __i < nc; __i++) { \ 1257 if (cols[__i] >= __end) onz[row - __rstart]++; \ 1258 else if (cols[__i] >= row && dnz[row - __rstart] < __ncols) dnz[row - __rstart]++; \ 1259 }) 1260 1261 /*MC 1262 MatPreallocateLocation - An alternative to MatPreallocateSet() that puts the nonzero locations into the matrix if it exists 1263 1264 Synopsis: 1265 #include <petscmat.h> 1266 PetscErrorCode MatPreallocateLocations(Mat A,PetscInt row,PetscInt ncols,PetscInt *cols,PetscInt *dnz,PetscInt *onz) 1267 1268 Not Collective 1269 1270 Input Parameters: 1271 + A - matrix 1272 . row - row where values exist (must be local to this process) 1273 . ncols - number of columns 1274 . cols - columns with nonzeros 1275 . dnz - the array that will be passed to the matrix preallocation routines 1276 - onz - the other array passed to the matrix preallocation routines 1277 1278 Level: deprecated (since v3.19) 1279 1280 Notes: 1281 This routine is no longer needed since assembling matrices without explicit preallocation will not be slower than 1282 the use of this routine 1283 1284 Do not malloc or free `dnz` and `onz` that is handled internally by these routines 1285 1286 This is a MACRO not a function because it uses a bunch of variables private to the MatPreallocation.... routines. 1287 1288 .seealso: [](ch_matrices), `MatPreallocateBegin()`, `MatPreallocateSet()`, `MatPreallocateSymmetricSetBlock()`, `MatPreallocateSetLocal()`, 1289 `MatPreallocateSymmetricSetLocalBlock()` 1290 M*/ 1291 #define MatPreallocateLocation(A, row, ncols, cols, dnz, onz) (A ? MatSetValues(A, 1, &row, ncols, cols, NULL, INSERT_VALUES) : MatPreallocateSet(row, ncols, cols, dnz, onz)) 1292 1293 /*MC 1294 MatPreallocateEnd - Ends the block of code that will count the number of nonzeros per 1295 row in a matrix providing the data that one can use to correctly preallocate the matrix. 1296 1297 Synopsis: 1298 #include <petscmat.h> 1299 PetscErrorCode MatPreallocateEnd(PetscInt *dnz, PetscInt *onz) 1300 1301 Collective 1302 1303 Input Parameters: 1304 + dnz - the array that was be passed to the matrix preallocation routines 1305 - onz - the other array passed to the matrix preallocation routines 1306 1307 Level: deprecated (since v3.19) 1308 1309 Notes: 1310 This routine is no longer needed since assembling matrices without explicit preallocation will not be slower than 1311 the use of this routine 1312 1313 Do not malloc or free `dnz` and `onz`, that is handled internally by these routines 1314 1315 Developer Note: 1316 This is a MACRO not a function because it closes the { started in MatPreallocateBegin(). 1317 1318 .seealso: [](ch_matrices), `MatPreallocateBegin()`, `MatPreallocateSet()`, `MatPreallocateSymmetricSetBlock()`, `MatPreallocateSetLocal()`, 1319 `MatPreallocateSymmetricSetLocalBlock()` 1320 M*/ 1321 #define MatPreallocateEnd(dnz, onz) \ 1322 PetscCall(PetscFree2(dnz, onz)); \ 1323 } \ 1324 while (0) 1325 1326 #define MatPreallocateFinalize(...) PETSC_DEPRECATED_MACRO("GCC warning \"Use MatPreallocateEnd() (since version 3.18)\"") MatPreallocateEnd(__VA_ARGS__) 1327 1328 /* Routines unique to particular data structures */ 1329 PETSC_EXTERN PetscErrorCode MatShellGetContext(Mat, void *); 1330 1331 PETSC_EXTERN PetscErrorCode MatInodeAdjustForInodes(Mat, IS *, IS *); 1332 PETSC_EXTERN PetscErrorCode MatInodeGetInodeSizes(Mat, PetscInt *, PetscInt *[], PetscInt *); 1333 1334 PETSC_EXTERN PetscErrorCode MatSeqAIJSetColumnIndices(Mat, PetscInt[]); 1335 PETSC_EXTERN PetscErrorCode MatSeqBAIJSetColumnIndices(Mat, PetscInt[]); 1336 PETSC_EXTERN PetscErrorCode MatCreateSeqAIJWithArrays(MPI_Comm, PetscInt, PetscInt, PetscInt[], PetscInt[], PetscScalar[], Mat *); 1337 PETSC_EXTERN PetscErrorCode MatCreateSeqBAIJWithArrays(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt[], PetscInt[], PetscScalar[], Mat *); 1338 PETSC_EXTERN PetscErrorCode MatCreateSeqSBAIJWithArrays(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt[], PetscInt[], PetscScalar[], Mat *); 1339 PETSC_EXTERN PetscErrorCode MatCreateSeqAIJFromTriple(MPI_Comm, PetscInt, PetscInt, PetscInt[], PetscInt[], PetscScalar[], Mat *, PetscInt, PetscBool); 1340 1341 #define MAT_SKIP_ALLOCATION -4 1342 1343 PETSC_EXTERN PetscErrorCode MatSeqBAIJSetPreallocation(Mat, PetscInt, PetscInt, const PetscInt[]); 1344 PETSC_EXTERN PetscErrorCode MatSeqSBAIJSetPreallocation(Mat, PetscInt, PetscInt, const PetscInt[]); 1345 PETSC_EXTERN PetscErrorCode MatSeqAIJSetPreallocation(Mat, PetscInt, const PetscInt[]); 1346 PETSC_EXTERN PetscErrorCode MatSeqAIJSetTotalPreallocation(Mat, PetscInt); 1347 1348 PETSC_EXTERN PetscErrorCode MatMPIBAIJSetPreallocation(Mat, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[]); 1349 PETSC_EXTERN PetscErrorCode MatMPISBAIJSetPreallocation(Mat, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[]); 1350 PETSC_EXTERN PetscErrorCode MatMPIAIJSetPreallocation(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[]); 1351 PETSC_EXTERN PetscErrorCode MatSeqAIJSetPreallocationCSR(Mat, const PetscInt[], const PetscInt[], const PetscScalar[]); 1352 PETSC_EXTERN PetscErrorCode MatSeqBAIJSetPreallocationCSR(Mat, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[]); 1353 PETSC_EXTERN PetscErrorCode MatMPIAIJSetPreallocationCSR(Mat, const PetscInt[], const PetscInt[], const PetscScalar[]); 1354 PETSC_EXTERN PetscErrorCode MatMPIBAIJSetPreallocationCSR(Mat, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[]); 1355 PETSC_EXTERN PetscErrorCode MatMPIAdjSetPreallocation(Mat, PetscInt[], PetscInt[], PetscInt[]); 1356 PETSC_EXTERN PetscErrorCode MatMPIAdjToSeq(Mat, Mat *); 1357 PETSC_EXTERN PetscErrorCode MatMPIAdjToSeqRankZero(Mat, Mat *); 1358 PETSC_EXTERN PetscErrorCode MatMPIDenseSetPreallocation(Mat, PetscScalar[]); 1359 PETSC_EXTERN PetscErrorCode MatSeqDenseSetPreallocation(Mat, PetscScalar[]); 1360 PETSC_EXTERN PetscErrorCode MatMPIAIJGetSeqAIJ(Mat, Mat *, Mat *, const PetscInt *[]); 1361 PETSC_EXTERN PetscErrorCode MatMPIBAIJGetSeqBAIJ(Mat, Mat *, Mat *, const PetscInt *[]); 1362 PETSC_EXTERN PetscErrorCode MatMPIAdjCreateNonemptySubcommMat(Mat, Mat *); 1363 1364 PETSC_EXTERN PetscErrorCode MatDenseGetLDA(Mat, PetscInt *); 1365 PETSC_EXTERN PetscErrorCode MatDenseSetLDA(Mat, PetscInt); 1366 PETSC_DEPRECATED_FUNCTION("Use MatDenseSetLDA() (since version 3.14)") static inline PetscErrorCode MatSeqDenseSetLDA(Mat A, PetscInt lda) 1367 { 1368 return MatDenseSetLDA(A, lda); 1369 } 1370 PETSC_EXTERN PetscErrorCode MatDenseGetLocalMatrix(Mat, Mat *); 1371 1372 PETSC_EXTERN PetscErrorCode MatBlockMatSetPreallocation(Mat, PetscInt, PetscInt, const PetscInt[]); 1373 1374 PETSC_EXTERN PetscErrorCode MatStoreValues(Mat); 1375 PETSC_EXTERN PetscErrorCode MatRetrieveValues(Mat); 1376 1377 PETSC_EXTERN PetscErrorCode MatFindNonzeroRows(Mat, IS *); 1378 PETSC_EXTERN PetscErrorCode MatFindZeroRows(Mat, IS *); 1379 /* 1380 These routines are not usually accessed directly, rather solving is 1381 done through the KSP and PC interfaces. 1382 */ 1383 1384 /*J 1385 MatOrderingType - String with the name of a PETSc matrix ordering. These orderings are most commonly used 1386 to reduce fill in sparse factorizations. 1387 1388 Level: beginner 1389 1390 Notes: 1391 If `MATORDERINGEXTERNAL` is used then PETSc does not compute an ordering and instead the external factorization solver package called utilizes one 1392 of its own. 1393 1394 There is no `MatOrdering` object, the ordering is obtained directly from the matrix with `MatGetOrdering()` 1395 1396 Developer Note: 1397 This API should be converted to an API similar to those for `MatColoring` and `MatPartitioning` 1398 1399 .seealso: [](ch_matrices), [](sec_graph), `MatGetFactor()`, `MatGetOrdering()`, `MatColoringType`, `MatPartitioningType`, `MatCoarsenType`, `MatCoarsenType`, 1400 `PCFactorSetOrderingType()` 1401 J*/ 1402 typedef const char *MatOrderingType; 1403 #define MATORDERINGNATURAL "natural" 1404 #define MATORDERINGND "nd" 1405 #define MATORDERING1WD "1wd" 1406 #define MATORDERINGRCM "rcm" 1407 #define MATORDERINGQMD "qmd" 1408 #define MATORDERINGROWLENGTH "rowlength" 1409 #define MATORDERINGWBM "wbm" 1410 #define MATORDERINGSPECTRAL "spectral" 1411 #define MATORDERINGAMD "amd" /* only works if UMFPACK is installed with PETSc */ 1412 #define MATORDERINGMETISND "metisnd" /* only works if METIS is installed with PETSc */ 1413 #define MATORDERINGNATURAL_OR_ND "natural_or_nd" /* special coase used for Cholesky and ICC, allows ND when AIJ matrix is used but Natural when SBAIJ is used */ 1414 #define MATORDERINGEXTERNAL "external" /* uses an ordering type internal to the factorization package */ 1415 1416 PETSC_EXTERN PetscErrorCode MatGetOrdering(Mat, MatOrderingType, IS *, IS *); 1417 PETSC_EXTERN PetscErrorCode MatGetOrderingList(PetscFunctionList *); 1418 PETSC_EXTERN PetscErrorCode MatOrderingRegister(const char[], PetscErrorCode (*)(Mat, MatOrderingType, IS *, IS *)); 1419 PETSC_EXTERN PetscFunctionList MatOrderingList; 1420 1421 #include "petscmatcoarsen.h" 1422 1423 PETSC_EXTERN PetscErrorCode MatReorderForNonzeroDiagonal(Mat, PetscReal, IS, IS); 1424 PETSC_EXTERN PetscErrorCode MatCreateLaplacian(Mat, PetscReal, PetscBool, Mat *); 1425 1426 PETSC_EXTERN PetscErrorCode MatFactorGetPreferredOrdering(Mat, MatFactorType, MatOrderingType *); 1427 1428 /*S 1429 MatFactorShiftType - Type of numeric shift used for factorizations 1430 1431 Values: 1432 + `MAT_SHIFT_NONE` - do not shift the matrix diagonal entries 1433 . `MAT_SHIFT_NONZERO` - shift the entries to be non-zero 1434 . `MAT_SHIFT_POSITIVE_DEFINITE` - shift the entries to force the factorization to be positive definite 1435 - `MAT_SHIFT_INBLOCKS` - only shift the factors inside the small dense diagonal blocks of the matrix, for example with `MATBAIJ` 1436 1437 Level: intermediate 1438 1439 .seealso: [](ch_matrices), `Mat`, `MatGetFactor()`, `PCFactorSetShiftType()` 1440 S*/ 1441 typedef enum { 1442 MAT_SHIFT_NONE, 1443 MAT_SHIFT_NONZERO, 1444 MAT_SHIFT_POSITIVE_DEFINITE, 1445 MAT_SHIFT_INBLOCKS 1446 } MatFactorShiftType; 1447 PETSC_EXTERN const char *const MatFactorShiftTypes[]; 1448 PETSC_EXTERN const char *const MatFactorShiftTypesDetail[]; 1449 1450 /*S 1451 MatFactorError - indicates what type of error was generated in a matrix factorization 1452 1453 Values: 1454 + `MAT_FACTOR_NOERROR` - there was no error during the factorization 1455 . `MAT_FACTOR_STRUCT_ZEROPIVOT` - there was a missing entry in a diagonal location of the matrix 1456 . `MAT_FACTOR_NUMERIC_ZEROPIVOT` - there was a (near) zero pivot during the factorization 1457 . `MAT_FACTOR_OUTMEMORY` - the factorization has run out of memory 1458 - `MAT_FACTOR_OTHER` - some other error has occurred. 1459 1460 Level: intermediate 1461 1462 Note: 1463 When a factorization is done in a preconditioner `PC` the error may be propagated up to a `PCFailedReason` or a `KSPConvergedReason` 1464 1465 .seealso: [](ch_matrices), `Mat`, `MatGetFactor()`, `MatFactorGetError()`, `MatFactorGetErrorZeroPivot()`, `MatFactorClearError()`, 1466 `PCFailedReason`, `PCGetFailedReason()`, `KSPConvergedReason` 1467 S*/ 1468 typedef enum { 1469 MAT_FACTOR_NOERROR, 1470 MAT_FACTOR_STRUCT_ZEROPIVOT, 1471 MAT_FACTOR_NUMERIC_ZEROPIVOT, 1472 MAT_FACTOR_OUTMEMORY, 1473 MAT_FACTOR_OTHER 1474 } MatFactorError; 1475 1476 PETSC_EXTERN PetscErrorCode MatFactorGetError(Mat, MatFactorError *); 1477 PETSC_EXTERN PetscErrorCode MatFactorClearError(Mat); 1478 PETSC_EXTERN PetscErrorCode MatFactorGetErrorZeroPivot(Mat, PetscReal *, PetscInt *); 1479 1480 /*S 1481 MatFactorInfo - Data passed into the matrix factorization routines, and information about the resulting factorization 1482 1483 Level: developer 1484 1485 Note: 1486 You can use `MatFactorInfoInitialize()` to set default values. 1487 1488 Fortran Note: 1489 The data is available in a double precision arrays of size `MAT_FACTORINFO_SIZE` 1490 1491 .seealso: [](ch_matrices), `Mat`, `MatInfo`, `MatGetFactor()`, `MatLUFactorSymbolic()`, `MatILUFactorSymbolic()`, `MatCholeskyFactorSymbolic()`, 1492 `MatICCFactorSymbolic()`, `MatICCFactor()`, `MatFactorInfoInitialize()` 1493 S*/ 1494 typedef struct { 1495 PetscReal diagonal_fill; /* force diagonal to fill in if initially not filled */ 1496 PetscReal usedt; 1497 PetscReal dt; /* drop tolerance */ 1498 PetscReal dtcol; /* tolerance for pivoting */ 1499 PetscReal dtcount; /* maximum nonzeros to be allowed per row */ 1500 PetscReal fill; /* expected fill, nonzeros in factored matrix/nonzeros in original matrix */ 1501 PetscReal levels; /* ICC/ILU(levels) */ 1502 PetscReal pivotinblocks; /* for BAIJ and SBAIJ matrices pivot in factorization on blocks, default 1.0 1503 factorization may be faster if do not pivot */ 1504 PetscReal zeropivot; /* pivot is called zero if less than this */ 1505 PetscReal shifttype; /* type of shift added to matrix factor to prevent zero pivots */ 1506 PetscReal shiftamount; /* how large the shift is */ 1507 } MatFactorInfo; 1508 1509 PETSC_EXTERN PetscErrorCode MatFactorInfoInitialize(MatFactorInfo *); 1510 PETSC_EXTERN PetscErrorCode MatCholeskyFactor(Mat, IS, const MatFactorInfo *); 1511 PETSC_EXTERN PetscErrorCode MatCholeskyFactorSymbolic(Mat, Mat, IS, const MatFactorInfo *); 1512 PETSC_EXTERN PetscErrorCode MatCholeskyFactorNumeric(Mat, Mat, const MatFactorInfo *); 1513 PETSC_EXTERN PetscErrorCode MatLUFactor(Mat, IS, IS, const MatFactorInfo *); 1514 PETSC_EXTERN PetscErrorCode MatILUFactor(Mat, IS, IS, const MatFactorInfo *); 1515 PETSC_EXTERN PetscErrorCode MatLUFactorSymbolic(Mat, Mat, IS, IS, const MatFactorInfo *); 1516 PETSC_EXTERN PetscErrorCode MatILUFactorSymbolic(Mat, Mat, IS, IS, const MatFactorInfo *); 1517 PETSC_EXTERN PetscErrorCode MatICCFactorSymbolic(Mat, Mat, IS, const MatFactorInfo *); 1518 PETSC_EXTERN PetscErrorCode MatICCFactor(Mat, IS, const MatFactorInfo *); 1519 PETSC_EXTERN PetscErrorCode MatLUFactorNumeric(Mat, Mat, const MatFactorInfo *); 1520 PETSC_EXTERN PetscErrorCode MatQRFactor(Mat, IS, const MatFactorInfo *); 1521 PETSC_EXTERN PetscErrorCode MatQRFactorSymbolic(Mat, Mat, IS, const MatFactorInfo *); 1522 PETSC_EXTERN PetscErrorCode MatQRFactorNumeric(Mat, Mat, const MatFactorInfo *); 1523 PETSC_EXTERN PetscErrorCode MatGetInertia(Mat, PetscInt *, PetscInt *, PetscInt *); 1524 PETSC_EXTERN PetscErrorCode MatSolve(Mat, Vec, Vec); 1525 PETSC_EXTERN PetscErrorCode MatForwardSolve(Mat, Vec, Vec); 1526 PETSC_EXTERN PetscErrorCode MatBackwardSolve(Mat, Vec, Vec); 1527 PETSC_EXTERN PetscErrorCode MatSolveAdd(Mat, Vec, Vec, Vec); 1528 PETSC_EXTERN PetscErrorCode MatSolveTranspose(Mat, Vec, Vec); 1529 PETSC_EXTERN PetscErrorCode MatSolveTransposeAdd(Mat, Vec, Vec, Vec); 1530 PETSC_EXTERN PetscErrorCode MatSolves(Mat, Vecs, Vecs); 1531 PETSC_EXTERN PetscErrorCode MatSetUnfactored(Mat); 1532 1533 typedef enum { 1534 MAT_FACTOR_SCHUR_UNFACTORED, 1535 MAT_FACTOR_SCHUR_FACTORED, 1536 MAT_FACTOR_SCHUR_INVERTED 1537 } MatFactorSchurStatus; 1538 PETSC_EXTERN PetscErrorCode MatFactorSetSchurIS(Mat, IS); 1539 PETSC_EXTERN PetscErrorCode MatFactorGetSchurComplement(Mat, Mat *, MatFactorSchurStatus *); 1540 PETSC_EXTERN PetscErrorCode MatFactorRestoreSchurComplement(Mat, Mat *, MatFactorSchurStatus); 1541 PETSC_EXTERN PetscErrorCode MatFactorInvertSchurComplement(Mat); 1542 PETSC_EXTERN PetscErrorCode MatFactorCreateSchurComplement(Mat, Mat *, MatFactorSchurStatus *); 1543 PETSC_EXTERN PetscErrorCode MatFactorSolveSchurComplement(Mat, Vec, Vec); 1544 PETSC_EXTERN PetscErrorCode MatFactorSolveSchurComplementTranspose(Mat, Vec, Vec); 1545 PETSC_EXTERN PetscErrorCode MatFactorFactorizeSchurComplement(Mat); 1546 1547 PETSC_EXTERN PetscErrorCode MatSeqDenseInvert(Mat); 1548 /*E 1549 MatSORType - What type of (S)SOR to perform 1550 1551 Values: 1552 + `SOR_FORWARD_SWEEP` - do a sweep from the first row of the matrix to the last 1553 . `SOR_BACKWARD_SWEEP` - do a sweep from the last row to the first 1554 . `SOR_SYMMETRIC_SWEEP` - do a sweep from the first row to the last and then back to the first 1555 . `SOR_LOCAL_FORWARD_SWEEP` - each MPI rank does its own forward sweep with no communication 1556 . `SOR_LOCAL_BACKWARD_SWEEP` - each MPI rank does its own backward sweep with no communication 1557 . `SOR_LOCAL_SYMMETRIC_SWEEP` - each MPI rank does its own symmetric sweep with no communication 1558 . `SOR_ZERO_INITIAL_GUESS` - indicates the initial solution is zero so the sweep can avoid unneeded computation 1559 . `SOR_EISENSTAT` - apply the Eisentat application of SOR, see `PCEISENSTAT` 1560 . `SOR_APPLY_UPPER` - multiply by the upper triangular portion of the matrix 1561 - `SOR_APPLY_LOWER` - multiply by the lower triangular portion of the matrix 1562 1563 Level: beginner 1564 1565 Note: 1566 These may be bitwise ORd together 1567 1568 Developer Note: 1569 Since `MatSORType` may be bitwise ORd together, so do not change the numerical values below 1570 1571 .seealso: [](ch_matrices), `MatSOR()` 1572 E*/ 1573 typedef enum { 1574 SOR_FORWARD_SWEEP = 1, 1575 SOR_BACKWARD_SWEEP = 2, 1576 SOR_SYMMETRIC_SWEEP = 3, 1577 SOR_LOCAL_FORWARD_SWEEP = 4, 1578 SOR_LOCAL_BACKWARD_SWEEP = 8, 1579 SOR_LOCAL_SYMMETRIC_SWEEP = 12, 1580 SOR_ZERO_INITIAL_GUESS = 16, 1581 SOR_EISENSTAT = 32, 1582 SOR_APPLY_UPPER = 64, 1583 SOR_APPLY_LOWER = 128 1584 } MatSORType; 1585 PETSC_EXTERN PetscErrorCode MatSOR(Mat, Vec, PetscReal, MatSORType, PetscReal, PetscInt, PetscInt, Vec); 1586 1587 /*S 1588 MatColoring - Object for managing the coloring of matrices. 1589 1590 Level: beginner 1591 1592 Notes: 1593 Coloring of matrices can be computed directly from the sparse matrix nonzero structure via the `MatColoring` object or from the mesh from which the 1594 matrix comes from via `DMCreateColoring()`. In general using the mesh produces a more optimal coloring (fewer colors). 1595 1596 Once a coloring is available `MatFDColoringCreate()` creates an object that can be used to efficiently compute Jacobians using that coloring. This 1597 same object can also be used to efficiently convert data created by Automatic Differentiation tools to PETSc sparse matrices. 1598 1599 .seealso: [](ch_matrices), [](sec_graph), `MatFDColoringCreate()`, `MatColoringWeightType`, `ISColoring`, `MatFDColoring`, `DMCreateColoring()`, `MatColoringCreate()`, 1600 `MatPartitioning`, `MatColoringType`, `MatPartitioningType`, `MatOrderingType`, `MatColoringSetWeightType()`, 1601 `MatColoringSetWeights()`, `MatCoarsenType`, `MatCoarsen` 1602 S*/ 1603 typedef struct _p_MatColoring *MatColoring; 1604 1605 /*J 1606 MatColoringType - String with the name of a PETSc matrix coloring 1607 1608 Level: beginner 1609 1610 .seealso: [](ch_matrices), [](sec_graph), `Mat`, `MatFDColoringCreate()`, `MatColoringSetType()`, `MatColoring` 1611 J*/ 1612 typedef const char *MatColoringType; 1613 #define MATCOLORINGJP "jp" 1614 #define MATCOLORINGPOWER "power" 1615 #define MATCOLORINGNATURAL "natural" 1616 #define MATCOLORINGSL "sl" 1617 #define MATCOLORINGLF "lf" 1618 #define MATCOLORINGID "id" 1619 #define MATCOLORINGGREEDY "greedy" 1620 1621 /*E 1622 MatColoringWeightType - Type of weight scheme used for the coloring algorithm 1623 1624 Values: 1625 + `MAT_COLORING_RANDOM` - Random weights 1626 . `MAT_COLORING_LEXICAL` - Lexical weighting based upon global numbering. 1627 - `MAT_COLORING_LF` - Last-first weighting. 1628 1629 Level: intermediate 1630 1631 .seealso: [](ch_matrices), `MatColoring`, `MatColoringCreate()`, `MatColoringSetWeightType()`, `MatColoringSetWeights()` 1632 E*/ 1633 typedef enum { 1634 MAT_COLORING_WEIGHT_RANDOM, 1635 MAT_COLORING_WEIGHT_LEXICAL, 1636 MAT_COLORING_WEIGHT_LF, 1637 MAT_COLORING_WEIGHT_SL 1638 } MatColoringWeightType; 1639 1640 PETSC_EXTERN PetscErrorCode MatColoringCreate(Mat, MatColoring *); 1641 PETSC_EXTERN PetscErrorCode MatColoringGetDegrees(Mat, PetscInt, PetscInt *); 1642 PETSC_EXTERN PetscErrorCode MatColoringDestroy(MatColoring *); 1643 PETSC_EXTERN PetscErrorCode MatColoringView(MatColoring, PetscViewer); 1644 PETSC_EXTERN PetscErrorCode MatColoringSetType(MatColoring, MatColoringType); 1645 PETSC_EXTERN PetscErrorCode MatColoringSetFromOptions(MatColoring); 1646 PETSC_EXTERN PetscErrorCode MatColoringSetDistance(MatColoring, PetscInt); 1647 PETSC_EXTERN PetscErrorCode MatColoringGetDistance(MatColoring, PetscInt *); 1648 PETSC_EXTERN PetscErrorCode MatColoringSetMaxColors(MatColoring, PetscInt); 1649 PETSC_EXTERN PetscErrorCode MatColoringGetMaxColors(MatColoring, PetscInt *); 1650 PETSC_EXTERN PetscErrorCode MatColoringApply(MatColoring, ISColoring *); 1651 PETSC_EXTERN PetscErrorCode MatColoringRegister(const char[], PetscErrorCode (*)(MatColoring)); 1652 PETSC_EXTERN PetscErrorCode MatColoringPatch(Mat, PetscInt, PetscInt, ISColoringValue[], ISColoring *); 1653 PETSC_EXTERN PetscErrorCode MatColoringSetWeightType(MatColoring, MatColoringWeightType); 1654 PETSC_EXTERN PetscErrorCode MatColoringSetWeights(MatColoring, PetscReal *, PetscInt *); 1655 PETSC_EXTERN PetscErrorCode MatColoringCreateWeights(MatColoring, PetscReal **, PetscInt **lperm); 1656 PETSC_EXTERN PetscErrorCode MatColoringTest(MatColoring, ISColoring); 1657 PETSC_DEPRECATED_FUNCTION("Use MatColoringTest() (since version 3.10)") static inline PetscErrorCode MatColoringTestValid(MatColoring matcoloring, ISColoring iscoloring) 1658 { 1659 return MatColoringTest(matcoloring, iscoloring); 1660 } 1661 PETSC_EXTERN PetscErrorCode MatISColoringTest(Mat, ISColoring); 1662 1663 /*S 1664 MatFDColoring - Object for computing a sparse Jacobian via finite differences with coloring 1665 1666 Level: beginner 1667 1668 Notes: 1669 This object is creating utilizing a coloring provided by the `MatColoring` object or `DMCreateColoring()` 1670 1671 The `SNES` option `-snes_fd_coloring` will cause the Jacobian needed by `SNES` to be computed via a use of this object 1672 1673 .seealso: [](ch_matrices), `Mat`, `MatFDColoringCreate()`, `MatFDColoringSetFunction()`, `MatColoring`, `DMCreateColoring()` 1674 S*/ 1675 typedef struct _p_MatFDColoring *MatFDColoring; 1676 1677 PETSC_EXTERN PetscErrorCode MatFDColoringCreate(Mat, ISColoring, MatFDColoring *); 1678 PETSC_EXTERN PetscErrorCode MatFDColoringDestroy(MatFDColoring *); 1679 PETSC_EXTERN PetscErrorCode MatFDColoringView(MatFDColoring, PetscViewer); 1680 PETSC_EXTERN PetscErrorCode MatFDColoringSetFunction(MatFDColoring, PetscErrorCode (*)(void), void *); 1681 PETSC_EXTERN PetscErrorCode MatFDColoringGetFunction(MatFDColoring, PetscErrorCode (**)(void), void **); 1682 PETSC_EXTERN PetscErrorCode MatFDColoringSetParameters(MatFDColoring, PetscReal, PetscReal); 1683 PETSC_EXTERN PetscErrorCode MatFDColoringSetFromOptions(MatFDColoring); 1684 PETSC_EXTERN PetscErrorCode MatFDColoringApply(Mat, MatFDColoring, Vec, void *); 1685 PETSC_EXTERN PetscErrorCode MatFDColoringSetF(MatFDColoring, Vec); 1686 PETSC_EXTERN PetscErrorCode MatFDColoringGetPerturbedColumns(MatFDColoring, PetscInt *, const PetscInt *[]); 1687 PETSC_EXTERN PetscErrorCode MatFDColoringSetUp(Mat, ISColoring, MatFDColoring); 1688 PETSC_EXTERN PetscErrorCode MatFDColoringSetBlockSize(MatFDColoring, PetscInt, PetscInt); 1689 PETSC_EXTERN PetscErrorCode MatFDColoringSetValues(Mat, MatFDColoring, const PetscScalar *); 1690 1691 /*S 1692 MatTransposeColoring - Object for computing a sparse matrix product C=A*B^T via coloring 1693 1694 Level: developer 1695 1696 .seealso: [](ch_matrices), `Mat`, `MatProductType`, `MatTransposeColoringCreate()` 1697 S*/ 1698 typedef struct _p_MatTransposeColoring *MatTransposeColoring; 1699 1700 PETSC_EXTERN PetscErrorCode MatTransposeColoringCreate(Mat, ISColoring, MatTransposeColoring *); 1701 PETSC_EXTERN PetscErrorCode MatTransColoringApplySpToDen(MatTransposeColoring, Mat, Mat); 1702 PETSC_EXTERN PetscErrorCode MatTransColoringApplyDenToSp(MatTransposeColoring, Mat, Mat); 1703 PETSC_EXTERN PetscErrorCode MatTransposeColoringDestroy(MatTransposeColoring *); 1704 1705 /*S 1706 MatPartitioning - Object for managing the partitioning of a matrix or graph 1707 1708 Level: beginner 1709 1710 Note: 1711 There is also a `PetscPartitioner` object that provides the same functionality. It can utilize the `MatPartitioning` operations 1712 via `PetscPartitionerSetType`(p,`PETSCPARTITIONERMATPARTITIONING`) 1713 1714 Developers Note: 1715 It is an extra maintenance and documentation cost to have two objects with the same functionality. `PetscPartitioner` should be removed 1716 1717 .seealso: [](ch_matrices), [](sec_graph), `Mat`, `MatPartitioningCreate()`, `MatPartitioningType`, `MatColoring`, `MatGetOrdering()`, `MatOrderingType`, 1718 `MatCoarsenType`, `MatCoarsenType` 1719 S*/ 1720 typedef struct _p_MatPartitioning *MatPartitioning; 1721 1722 /*J 1723 MatPartitioningType - String with the name of a PETSc matrix partitioning 1724 1725 Level: beginner 1726 dm 1727 .seealso: [](ch_matrices), [](sec_graph), `Mat`, `MatPartitioningCreate()`, `MatPartitioning`, `MatPartitioningSetType()`, `MatColoringType`, `MatOrderingType`, 1728 `MatCoarsenType`, `MatCoarsenType` 1729 J*/ 1730 typedef const char *MatPartitioningType; 1731 #define MATPARTITIONINGCURRENT "current" 1732 #define MATPARTITIONINGAVERAGE "average" 1733 #define MATPARTITIONINGSQUARE "square" 1734 #define MATPARTITIONINGPARMETIS "parmetis" 1735 #define MATPARTITIONINGCHACO "chaco" 1736 #define MATPARTITIONINGPARTY "party" 1737 #define MATPARTITIONINGPTSCOTCH "ptscotch" 1738 #define MATPARTITIONINGHIERARCH "hierarch" 1739 1740 PETSC_EXTERN PetscErrorCode MatPartitioningCreate(MPI_Comm, MatPartitioning *); 1741 PETSC_EXTERN PetscErrorCode MatPartitioningSetType(MatPartitioning, MatPartitioningType); 1742 PETSC_EXTERN PetscErrorCode MatPartitioningSetNParts(MatPartitioning, PetscInt); 1743 PETSC_EXTERN PetscErrorCode MatPartitioningSetAdjacency(MatPartitioning, Mat); 1744 PETSC_EXTERN PetscErrorCode MatPartitioningSetNumberVertexWeights(MatPartitioning, PetscInt); 1745 PETSC_EXTERN PetscErrorCode MatPartitioningSetVertexWeights(MatPartitioning, const PetscInt[]); 1746 PETSC_EXTERN PetscErrorCode MatPartitioningSetPartitionWeights(MatPartitioning, const PetscReal[]); 1747 PETSC_EXTERN PetscErrorCode MatPartitioningSetUseEdgeWeights(MatPartitioning, PetscBool); 1748 PETSC_EXTERN PetscErrorCode MatPartitioningGetUseEdgeWeights(MatPartitioning, PetscBool *); 1749 PETSC_EXTERN PetscErrorCode MatPartitioningApply(MatPartitioning, IS *); 1750 PETSC_EXTERN PetscErrorCode MatPartitioningImprove(MatPartitioning, IS *); 1751 PETSC_EXTERN PetscErrorCode MatPartitioningViewImbalance(MatPartitioning, IS); 1752 PETSC_EXTERN PetscErrorCode MatPartitioningApplyND(MatPartitioning, IS *); 1753 PETSC_EXTERN PetscErrorCode MatPartitioningDestroy(MatPartitioning *); 1754 PETSC_EXTERN PetscErrorCode MatPartitioningRegister(const char[], PetscErrorCode (*)(MatPartitioning)); 1755 PETSC_EXTERN PetscErrorCode MatPartitioningView(MatPartitioning, PetscViewer); 1756 PETSC_EXTERN PetscErrorCode MatPartitioningViewFromOptions(MatPartitioning, PetscObject, const char[]); 1757 PETSC_EXTERN PetscErrorCode MatPartitioningSetFromOptions(MatPartitioning); 1758 PETSC_EXTERN PetscErrorCode MatPartitioningGetType(MatPartitioning, MatPartitioningType *); 1759 1760 PETSC_EXTERN PetscErrorCode MatPartitioningParmetisSetRepartition(MatPartitioning part); 1761 PETSC_EXTERN PetscErrorCode MatPartitioningParmetisSetCoarseSequential(MatPartitioning); 1762 PETSC_EXTERN PetscErrorCode MatPartitioningParmetisGetEdgeCut(MatPartitioning, PetscInt *); 1763 1764 typedef enum { 1765 MP_CHACO_MULTILEVEL = 1, 1766 MP_CHACO_SPECTRAL = 2, 1767 MP_CHACO_LINEAR = 4, 1768 MP_CHACO_RANDOM = 5, 1769 MP_CHACO_SCATTERED = 6 1770 } MPChacoGlobalType; 1771 PETSC_EXTERN const char *const MPChacoGlobalTypes[]; 1772 typedef enum { 1773 MP_CHACO_KERNIGHAN = 1, 1774 MP_CHACO_NONE = 2 1775 } MPChacoLocalType; 1776 PETSC_EXTERN const char *const MPChacoLocalTypes[]; 1777 typedef enum { 1778 MP_CHACO_LANCZOS = 0, 1779 MP_CHACO_RQI = 1 1780 } MPChacoEigenType; 1781 PETSC_EXTERN const char *const MPChacoEigenTypes[]; 1782 1783 PETSC_EXTERN PetscErrorCode MatPartitioningChacoSetGlobal(MatPartitioning, MPChacoGlobalType); 1784 PETSC_EXTERN PetscErrorCode MatPartitioningChacoGetGlobal(MatPartitioning, MPChacoGlobalType *); 1785 PETSC_EXTERN PetscErrorCode MatPartitioningChacoSetLocal(MatPartitioning, MPChacoLocalType); 1786 PETSC_EXTERN PetscErrorCode MatPartitioningChacoGetLocal(MatPartitioning, MPChacoLocalType *); 1787 PETSC_EXTERN PetscErrorCode MatPartitioningChacoSetCoarseLevel(MatPartitioning, PetscReal); 1788 PETSC_EXTERN PetscErrorCode MatPartitioningChacoSetEigenSolver(MatPartitioning, MPChacoEigenType); 1789 PETSC_EXTERN PetscErrorCode MatPartitioningChacoGetEigenSolver(MatPartitioning, MPChacoEigenType *); 1790 PETSC_EXTERN PetscErrorCode MatPartitioningChacoSetEigenTol(MatPartitioning, PetscReal); 1791 PETSC_EXTERN PetscErrorCode MatPartitioningChacoGetEigenTol(MatPartitioning, PetscReal *); 1792 PETSC_EXTERN PetscErrorCode MatPartitioningChacoSetEigenNumber(MatPartitioning, PetscInt); 1793 PETSC_EXTERN PetscErrorCode MatPartitioningChacoGetEigenNumber(MatPartitioning, PetscInt *); 1794 1795 #define MP_PARTY_OPT "opt" 1796 #define MP_PARTY_LIN "lin" 1797 #define MP_PARTY_SCA "sca" 1798 #define MP_PARTY_RAN "ran" 1799 #define MP_PARTY_GBF "gbf" 1800 #define MP_PARTY_GCF "gcf" 1801 #define MP_PARTY_BUB "bub" 1802 #define MP_PARTY_DEF "def" 1803 PETSC_EXTERN PetscErrorCode MatPartitioningPartySetGlobal(MatPartitioning, const char *); 1804 #define MP_PARTY_HELPFUL_SETS "hs" 1805 #define MP_PARTY_KERNIGHAN_LIN "kl" 1806 #define MP_PARTY_NONE "no" 1807 PETSC_EXTERN PetscErrorCode MatPartitioningPartySetLocal(MatPartitioning, const char *); 1808 PETSC_EXTERN PetscErrorCode MatPartitioningPartySetCoarseLevel(MatPartitioning, PetscReal); 1809 PETSC_EXTERN PetscErrorCode MatPartitioningPartySetBipart(MatPartitioning, PetscBool); 1810 PETSC_EXTERN PetscErrorCode MatPartitioningPartySetMatchOptimization(MatPartitioning, PetscBool); 1811 1812 typedef enum { 1813 MP_PTSCOTCH_DEFAULT, 1814 MP_PTSCOTCH_QUALITY, 1815 MP_PTSCOTCH_SPEED, 1816 MP_PTSCOTCH_BALANCE, 1817 MP_PTSCOTCH_SAFETY, 1818 MP_PTSCOTCH_SCALABILITY 1819 } MPPTScotchStrategyType; 1820 PETSC_EXTERN const char *const MPPTScotchStrategyTypes[]; 1821 1822 PETSC_EXTERN PetscErrorCode MatPartitioningPTScotchSetImbalance(MatPartitioning, PetscReal); 1823 PETSC_EXTERN PetscErrorCode MatPartitioningPTScotchGetImbalance(MatPartitioning, PetscReal *); 1824 PETSC_EXTERN PetscErrorCode MatPartitioningPTScotchSetStrategy(MatPartitioning, MPPTScotchStrategyType); 1825 PETSC_EXTERN PetscErrorCode MatPartitioningPTScotchGetStrategy(MatPartitioning, MPPTScotchStrategyType *); 1826 1827 /* 1828 * hierarchical partitioning 1829 */ 1830 PETSC_EXTERN PetscErrorCode MatPartitioningHierarchicalGetFineparts(MatPartitioning, IS *); 1831 PETSC_EXTERN PetscErrorCode MatPartitioningHierarchicalGetCoarseparts(MatPartitioning, IS *); 1832 PETSC_EXTERN PetscErrorCode MatPartitioningHierarchicalSetNcoarseparts(MatPartitioning, PetscInt); 1833 PETSC_EXTERN PetscErrorCode MatPartitioningHierarchicalSetNfineparts(MatPartitioning, PetscInt); 1834 1835 PETSC_EXTERN PetscErrorCode MatMeshToCellGraph(Mat, PetscInt, Mat *); 1836 1837 /* 1838 If you add entries here you must also add them to src/mat/f90-mod/petscmat.h 1839 If any of the enum values are changed, also update dMatOps dict at src/binding/petsc4py/src/libpetsc4py/libpetsc4py.pyx 1840 */ 1841 typedef enum { 1842 MATOP_SET_VALUES = 0, 1843 MATOP_GET_ROW = 1, 1844 MATOP_RESTORE_ROW = 2, 1845 MATOP_MULT = 3, 1846 MATOP_MULT_ADD = 4, 1847 MATOP_MULT_TRANSPOSE = 5, 1848 MATOP_MULT_TRANSPOSE_ADD = 6, 1849 MATOP_SOLVE = 7, 1850 MATOP_SOLVE_ADD = 8, 1851 MATOP_SOLVE_TRANSPOSE = 9, 1852 MATOP_SOLVE_TRANSPOSE_ADD = 10, 1853 MATOP_LUFACTOR = 11, 1854 MATOP_CHOLESKYFACTOR = 12, 1855 MATOP_SOR = 13, 1856 MATOP_TRANSPOSE = 14, 1857 MATOP_GETINFO = 15, 1858 MATOP_EQUAL = 16, 1859 MATOP_GET_DIAGONAL = 17, 1860 MATOP_DIAGONAL_SCALE = 18, 1861 MATOP_NORM = 19, 1862 MATOP_ASSEMBLY_BEGIN = 20, 1863 MATOP_ASSEMBLY_END = 21, 1864 MATOP_SET_OPTION = 22, 1865 MATOP_ZERO_ENTRIES = 23, 1866 MATOP_ZERO_ROWS = 24, 1867 MATOP_LUFACTOR_SYMBOLIC = 25, 1868 MATOP_LUFACTOR_NUMERIC = 26, 1869 MATOP_CHOLESKY_FACTOR_SYMBOLIC = 27, 1870 MATOP_CHOLESKY_FACTOR_NUMERIC = 28, 1871 MATOP_SETUP = 29, 1872 MATOP_ILUFACTOR_SYMBOLIC = 30, 1873 MATOP_ICCFACTOR_SYMBOLIC = 31, 1874 MATOP_GET_DIAGONAL_BLOCK = 32, 1875 MATOP_SET_INF = 33, 1876 MATOP_DUPLICATE = 34, 1877 MATOP_FORWARD_SOLVE = 35, 1878 MATOP_BACKWARD_SOLVE = 36, 1879 MATOP_ILUFACTOR = 37, 1880 MATOP_ICCFACTOR = 38, 1881 MATOP_AXPY = 39, 1882 MATOP_CREATE_SUBMATRICES = 40, 1883 MATOP_INCREASE_OVERLAP = 41, 1884 MATOP_GET_VALUES = 42, 1885 MATOP_COPY = 43, 1886 MATOP_GET_ROW_MAX = 44, 1887 MATOP_SCALE = 45, 1888 MATOP_SHIFT = 46, 1889 MATOP_DIAGONAL_SET = 47, 1890 MATOP_ZERO_ROWS_COLUMNS = 48, 1891 MATOP_SET_RANDOM = 49, 1892 MATOP_GET_ROW_IJ = 50, 1893 MATOP_RESTORE_ROW_IJ = 51, 1894 MATOP_GET_COLUMN_IJ = 52, 1895 MATOP_RESTORE_COLUMN_IJ = 53, 1896 MATOP_FDCOLORING_CREATE = 54, 1897 MATOP_COLORING_PATCH = 55, 1898 MATOP_SET_UNFACTORED = 56, 1899 MATOP_PERMUTE = 57, 1900 MATOP_SET_VALUES_BLOCKED = 58, 1901 MATOP_CREATE_SUBMATRIX = 59, 1902 MATOP_DESTROY = 60, 1903 MATOP_VIEW = 61, 1904 MATOP_CONVERT_FROM = 62, 1905 /* MATOP_PLACEHOLDER_63=63 */ 1906 MATOP_MATMAT_MULT_SYMBOLIC = 64, 1907 MATOP_MATMAT_MULT_NUMERIC = 65, 1908 MATOP_SET_LOCAL_TO_GLOBAL_MAP = 66, 1909 MATOP_SET_VALUES_LOCAL = 67, 1910 MATOP_ZERO_ROWS_LOCAL = 68, 1911 MATOP_GET_ROW_MAX_ABS = 69, 1912 MATOP_GET_ROW_MIN_ABS = 70, 1913 MATOP_CONVERT = 71, 1914 MATOP_HAS_OPERATION = 72, 1915 /* MATOP_PLACEHOLDER_73=73, */ 1916 MATOP_SET_VALUES_ADIFOR = 74, 1917 MATOP_FD_COLORING_APPLY = 75, 1918 MATOP_SET_FROM_OPTIONS = 76, 1919 /* MATOP_PLACEHOLDER_77=77, */ 1920 /* MATOP_PLACEHOLDER_78=78, */ 1921 MATOP_FIND_ZERO_DIAGONALS = 79, 1922 MATOP_MULT_MULTIPLE = 80, 1923 MATOP_SOLVE_MULTIPLE = 81, 1924 MATOP_GET_INERTIA = 82, 1925 MATOP_LOAD = 83, 1926 MATOP_IS_SYMMETRIC = 84, 1927 MATOP_IS_HERMITIAN = 85, 1928 MATOP_IS_STRUCTURALLY_SYMMETRIC = 86, 1929 MATOP_SET_VALUES_BLOCKEDLOCAL = 87, 1930 MATOP_CREATE_VECS = 88, 1931 /* MATOP_PLACEHOLDER_89=89, */ 1932 MATOP_MAT_MULT_SYMBOLIC = 90, 1933 MATOP_MAT_MULT_NUMERIC = 91, 1934 /* MATOP_PLACEHOLDER_92=92, */ 1935 MATOP_PTAP_SYMBOLIC = 93, 1936 MATOP_PTAP_NUMERIC = 94, 1937 /* MATOP_PLACEHOLDER_95=95, */ 1938 MATOP_MAT_TRANSPOSE_MULT_SYMBO = 96, 1939 MATOP_MAT_TRANSPOSE_MULT_NUMER = 97, 1940 MATOP_BIND_TO_CPU = 98, 1941 MATOP_PRODUCTSETFROMOPTIONS = 99, 1942 MATOP_PRODUCTSYMBOLIC = 100, 1943 MATOP_PRODUCTNUMERIC = 101, 1944 MATOP_CONJUGATE = 102, 1945 MATOP_VIEW_NATIVE = 103, 1946 MATOP_SET_VALUES_ROW = 104, 1947 MATOP_REAL_PART = 105, 1948 MATOP_IMAGINARY_PART = 106, 1949 MATOP_GET_ROW_UPPER_TRIANGULAR = 107, 1950 MATOP_RESTORE_ROW_UPPER_TRIANG = 108, 1951 MATOP_MAT_SOLVE = 109, 1952 MATOP_MAT_SOLVE_TRANSPOSE = 110, 1953 MATOP_GET_ROW_MIN = 111, 1954 MATOP_GET_COLUMN_VECTOR = 112, 1955 MATOP_MISSING_DIAGONAL = 113, 1956 MATOP_GET_SEQ_NONZERO_STRUCTUR = 114, 1957 MATOP_CREATE = 115, 1958 MATOP_GET_GHOSTS = 116, 1959 MATOP_GET_LOCAL_SUB_MATRIX = 117, 1960 MATOP_RESTORE_LOCALSUB_MATRIX = 118, 1961 MATOP_MULT_DIAGONAL_BLOCK = 119, 1962 MATOP_HERMITIAN_TRANSPOSE = 120, 1963 MATOP_MULT_HERMITIAN_TRANSPOSE = 121, 1964 MATOP_MULT_HERMITIAN_TRANS_ADD = 122, 1965 MATOP_GET_MULTI_PROC_BLOCK = 123, 1966 MATOP_FIND_NONZERO_ROWS = 124, 1967 MATOP_GET_COLUMN_NORMS = 125, 1968 MATOP_INVERT_BLOCK_DIAGONAL = 126, 1969 MATOP_INVERT_VBLOCK_DIAGONAL = 127, 1970 MATOP_CREATE_SUB_MATRICES_MPI = 128, 1971 MATOP_SET_VALUES_BATCH = 129, 1972 /* MATOP_PLACEHOLDER_130=130, */ 1973 MATOP_TRANSPOSE_MAT_MULT_SYMBO = 131, 1974 MATOP_TRANSPOSE_MAT_MULT_NUMER = 132, 1975 MATOP_TRANSPOSE_COLORING_CREAT = 133, 1976 MATOP_TRANS_COLORING_APPLY_SPT = 134, 1977 MATOP_TRANS_COLORING_APPLY_DEN = 135, 1978 /* MATOP_PLACEHOLDER_136=136, */ 1979 MATOP_RART_SYMBOLIC = 137, 1980 MATOP_RART_NUMERIC = 138, 1981 MATOP_SET_BLOCK_SIZES = 139, 1982 MATOP_AYPX = 140, 1983 MATOP_RESIDUAL = 141, 1984 MATOP_FDCOLORING_SETUP = 142, 1985 MATOP_FIND_OFFBLOCK_ENTRIES = 143, 1986 MATOP_MPICONCATENATESEQ = 144, 1987 MATOP_DESTROYSUBMATRICES = 145, 1988 MATOP_TRANSPOSE_SOLVE = 146, 1989 MATOP_GET_VALUES_LOCAL = 147 1990 } MatOperation; 1991 PETSC_EXTERN PetscErrorCode MatSetOperation(Mat, MatOperation, void (*)(void)); 1992 PETSC_EXTERN PetscErrorCode MatGetOperation(Mat, MatOperation, void (**)(void)); 1993 PETSC_EXTERN PetscErrorCode MatHasOperation(Mat, MatOperation, PetscBool *); 1994 PETSC_EXTERN PetscErrorCode MatHasCongruentLayouts(Mat, PetscBool *); 1995 PETSC_DEPRECATED_FUNCTION("Use MatProductClear() (since version 3.14)") static inline PetscErrorCode MatFreeIntermediateDataStructures(Mat A) 1996 { 1997 return MatProductClear(A); 1998 } 1999 PETSC_EXTERN PetscErrorCode MatShellSetOperation(Mat, MatOperation, void (*)(void)); 2000 PETSC_EXTERN PetscErrorCode MatShellGetOperation(Mat, MatOperation, void (**)(void)); 2001 PETSC_EXTERN PetscErrorCode MatShellSetContext(Mat, void *); 2002 PETSC_EXTERN PetscErrorCode MatShellSetContextDestroy(Mat, PetscErrorCode (*)(void *)); 2003 PETSC_EXTERN PetscErrorCode MatShellSetVecType(Mat, VecType); 2004 PETSC_EXTERN PetscErrorCode MatShellTestMult(Mat, PetscErrorCode (*)(void *, Vec, Vec), Vec, void *, PetscBool *); 2005 PETSC_EXTERN PetscErrorCode MatShellTestMultTranspose(Mat, PetscErrorCode (*)(void *, Vec, Vec), Vec, void *, PetscBool *); 2006 PETSC_EXTERN PetscErrorCode MatShellSetManageScalingShifts(Mat); 2007 PETSC_EXTERN PetscErrorCode MatShellSetMatProductOperation(Mat, MatProductType, PetscErrorCode (*)(Mat, Mat, Mat, void **), PetscErrorCode (*)(Mat, Mat, Mat, void *), PetscErrorCode (*)(void *), MatType, MatType); 2008 PETSC_EXTERN PetscErrorCode MatIsShell(Mat, PetscBool *); 2009 2010 /* 2011 Codes for matrices stored on disk. By default they are 2012 stored in a universal format. By changing the format with 2013 PetscViewerPushFormat(viewer,PETSC_VIEWER_NATIVE); the matrices will 2014 be stored in a way natural for the matrix, for example dense matrices 2015 would be stored as dense. Matrices stored this way may only be 2016 read into matrices of the same type. 2017 */ 2018 #define MATRIX_BINARY_FORMAT_DENSE -1 2019 2020 PETSC_EXTERN PetscErrorCode MatMPIBAIJSetHashTableFactor(Mat, PetscReal); 2021 2022 PETSC_EXTERN PetscErrorCode MatISSetLocalMatType(Mat, MatType); 2023 PETSC_EXTERN PetscErrorCode MatISSetPreallocation(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[]); 2024 PETSC_EXTERN PetscErrorCode MatISStoreL2L(Mat, PetscBool); 2025 PETSC_EXTERN PetscErrorCode MatISFixLocalEmpty(Mat, PetscBool); 2026 PETSC_EXTERN PetscErrorCode MatISGetLocalMat(Mat, Mat *); 2027 PETSC_EXTERN PetscErrorCode MatISRestoreLocalMat(Mat, Mat *); 2028 PETSC_EXTERN PetscErrorCode MatISSetLocalMat(Mat, Mat); 2029 PETSC_EXTERN PetscErrorCode MatISGetLocalToGlobalMapping(Mat, ISLocalToGlobalMapping *, ISLocalToGlobalMapping *); 2030 PETSC_EXTERN PETSC_DEPRECATED_FUNCTION("Use the MatConvert() interface (since version 3.10)") PetscErrorCode MatISGetMPIXAIJ(Mat, MatReuse, Mat *); 2031 2032 /*S 2033 MatNullSpace - Object that removes a null space from a vector, i.e. 2034 orthogonalizes the vector to a subspace 2035 2036 Level: advanced 2037 2038 .seealso: [](ch_matrices), `Mat`, `MatNullSpaceCreate()`, `MatNullSpaceSetFunction()`, `MatGetNullSpace()`, `MatSetNullSpace()` 2039 S*/ 2040 typedef struct _p_MatNullSpace *MatNullSpace; 2041 2042 PETSC_EXTERN PetscErrorCode MatNullSpaceCreate(MPI_Comm, PetscBool, PetscInt, const Vec[], MatNullSpace *); 2043 PETSC_EXTERN PetscErrorCode MatNullSpaceSetFunction(MatNullSpace, PetscErrorCode (*)(MatNullSpace, Vec, void *), void *); 2044 PETSC_EXTERN PetscErrorCode MatNullSpaceDestroy(MatNullSpace *); 2045 PETSC_EXTERN PetscErrorCode MatNullSpaceRemove(MatNullSpace, Vec); 2046 PETSC_EXTERN PetscErrorCode MatGetNullSpace(Mat, MatNullSpace *); 2047 PETSC_EXTERN PetscErrorCode MatGetTransposeNullSpace(Mat, MatNullSpace *); 2048 PETSC_EXTERN PetscErrorCode MatSetTransposeNullSpace(Mat, MatNullSpace); 2049 PETSC_EXTERN PetscErrorCode MatSetNullSpace(Mat, MatNullSpace); 2050 PETSC_EXTERN PetscErrorCode MatSetNearNullSpace(Mat, MatNullSpace); 2051 PETSC_EXTERN PetscErrorCode MatGetNearNullSpace(Mat, MatNullSpace *); 2052 PETSC_EXTERN PetscErrorCode MatNullSpaceTest(MatNullSpace, Mat, PetscBool *); 2053 PETSC_EXTERN PetscErrorCode MatNullSpaceView(MatNullSpace, PetscViewer); 2054 PETSC_EXTERN PetscErrorCode MatNullSpaceGetVecs(MatNullSpace, PetscBool *, PetscInt *, const Vec **); 2055 PETSC_EXTERN PetscErrorCode MatNullSpaceCreateRigidBody(Vec, MatNullSpace *); 2056 2057 PETSC_EXTERN PetscErrorCode MatReorderingSeqSBAIJ(Mat, IS); 2058 PETSC_EXTERN PetscErrorCode MatMPISBAIJSetHashTableFactor(Mat, PetscReal); 2059 PETSC_EXTERN PetscErrorCode MatSeqSBAIJSetColumnIndices(Mat, PetscInt *); 2060 2061 PETSC_EXTERN PetscErrorCode MatCreateMAIJ(Mat, PetscInt, Mat *); 2062 PETSC_EXTERN PetscErrorCode MatMAIJRedimension(Mat, PetscInt, Mat *); 2063 PETSC_EXTERN PetscErrorCode MatMAIJGetAIJ(Mat, Mat *); 2064 2065 PETSC_EXTERN PetscErrorCode MatComputeOperator(Mat, MatType, Mat *); 2066 PETSC_EXTERN PetscErrorCode MatComputeOperatorTranspose(Mat, MatType, Mat *); 2067 2068 PETSC_DEPRECATED_FUNCTION("Use MatComputeOperator() (since version 3.12)") static inline PetscErrorCode MatComputeExplicitOperator(Mat A, Mat *B) 2069 { 2070 return MatComputeOperator(A, PETSC_NULLPTR, B); 2071 } 2072 PETSC_DEPRECATED_FUNCTION("Use MatComputeOperatorTranspose() (since version 3.12)") static inline PetscErrorCode MatComputeExplicitOperatorTranspose(Mat A, Mat *B) 2073 { 2074 return MatComputeOperatorTranspose(A, PETSC_NULLPTR, B); 2075 } 2076 2077 PETSC_EXTERN PetscErrorCode MatCreateKAIJ(Mat, PetscInt, PetscInt, const PetscScalar[], const PetscScalar[], Mat *); 2078 PETSC_EXTERN PetscErrorCode MatKAIJGetAIJ(Mat, Mat *); 2079 PETSC_EXTERN PetscErrorCode MatKAIJGetS(Mat, PetscInt *, PetscInt *, PetscScalar **); 2080 PETSC_EXTERN PetscErrorCode MatKAIJGetSRead(Mat, PetscInt *, PetscInt *, const PetscScalar **); 2081 PETSC_EXTERN PetscErrorCode MatKAIJRestoreS(Mat, PetscScalar **); 2082 PETSC_EXTERN PetscErrorCode MatKAIJRestoreSRead(Mat, const PetscScalar **); 2083 PETSC_EXTERN PetscErrorCode MatKAIJGetT(Mat, PetscInt *, PetscInt *, PetscScalar **); 2084 PETSC_EXTERN PetscErrorCode MatKAIJGetTRead(Mat, PetscInt *, PetscInt *, const PetscScalar **); 2085 PETSC_EXTERN PetscErrorCode MatKAIJRestoreT(Mat, PetscScalar **); 2086 PETSC_EXTERN PetscErrorCode MatKAIJRestoreTRead(Mat, const PetscScalar **); 2087 PETSC_EXTERN PetscErrorCode MatKAIJSetAIJ(Mat, Mat); 2088 PETSC_EXTERN PetscErrorCode MatKAIJSetS(Mat, PetscInt, PetscInt, const PetscScalar[]); 2089 PETSC_EXTERN PetscErrorCode MatKAIJSetT(Mat, PetscInt, PetscInt, const PetscScalar[]); 2090 PETSC_EXTERN PetscErrorCode MatKAIJGetScaledIdentity(Mat, PetscBool *); 2091 2092 PETSC_EXTERN PetscErrorCode MatDiagonalScaleLocal(Mat, Vec); 2093 2094 PETSC_EXTERN PetscErrorCode MatCreateMFFD(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, Mat *); 2095 PETSC_EXTERN PetscErrorCode MatMFFDSetBase(Mat, Vec, Vec); 2096 PETSC_EXTERN PetscErrorCode MatMFFDSetFunction(Mat, PetscErrorCode (*)(void *, Vec, Vec), void *); 2097 PETSC_EXTERN PetscErrorCode MatMFFDSetFunctioni(Mat, PetscErrorCode (*)(void *, PetscInt, Vec, PetscScalar *)); 2098 PETSC_EXTERN PetscErrorCode MatMFFDSetFunctioniBase(Mat, PetscErrorCode (*)(void *, Vec)); 2099 PETSC_EXTERN PetscErrorCode MatMFFDSetHHistory(Mat, PetscScalar[], PetscInt); 2100 PETSC_EXTERN PetscErrorCode MatMFFDResetHHistory(Mat); 2101 PETSC_EXTERN PetscErrorCode MatMFFDSetFunctionError(Mat, PetscReal); 2102 PETSC_EXTERN PetscErrorCode MatMFFDSetPeriod(Mat, PetscInt); 2103 PETSC_EXTERN PetscErrorCode MatMFFDGetH(Mat, PetscScalar *); 2104 PETSC_EXTERN PetscErrorCode MatMFFDSetOptionsPrefix(Mat, const char[]); 2105 PETSC_EXTERN PetscErrorCode MatMFFDCheckPositivity(void *, Vec, Vec, PetscScalar *); 2106 PETSC_EXTERN PetscErrorCode MatMFFDSetCheckh(Mat, PetscErrorCode (*)(void *, Vec, Vec, PetscScalar *), void *); 2107 2108 /*S 2109 MatMFFD - A data structured used to manage the computation of the h differencing parameter for matrix-free 2110 Jacobian vector products 2111 2112 Level: developer 2113 2114 Notes: 2115 `MATMFFD` is a specific `MatType` which uses the `MatMFFD` data structure 2116 2117 MatMFFD*() methods actually take the `Mat` as their first argument. Not a `MatMFFD` data structure 2118 2119 This functionality is often obtained using `MatCreateSNESMF()` or with `SNES` solvers using `-snes_mf` or `-snes_mf_operator` 2120 2121 .seealso: [](ch_matrices), `MatMFFDType`, `MATMFFD`, `MatCreateMFFD()`, `MatMFFDSetFuction()`, `MatMFFDSetType()`, `MatMFFDRegister()`, 2122 `MatCreateSNESMF()`, `SNES`, `-snes_mf`, `-snes_mf_operator` 2123 S*/ 2124 typedef struct _p_MatMFFD *MatMFFD; 2125 2126 /*J 2127 MatMFFDType - algorithm used to compute the `h` used in computing matrix-vector products via differencing of a function 2128 2129 Values: 2130 + `MATMFFD_DS` - an algorithm described by Dennis and Schnabel 2131 - `MATMFFD_WP` - the Walker-Pernice strategy. 2132 2133 Level: beginner 2134 2135 .seealso: [](ch_matrices), `MatMFFDSetType()`, `MatMFFDRegister()`, `MatMFFDSetFunction()`, `MatCreateMFFD()` 2136 J*/ 2137 typedef const char *MatMFFDType; 2138 #define MATMFFD_DS "ds" 2139 #define MATMFFD_WP "wp" 2140 2141 PETSC_EXTERN PetscErrorCode MatMFFDSetType(Mat, MatMFFDType); 2142 PETSC_EXTERN PetscErrorCode MatMFFDRegister(const char[], PetscErrorCode (*)(MatMFFD)); 2143 2144 PETSC_EXTERN PetscErrorCode MatMFFDDSSetUmin(Mat, PetscReal); 2145 PETSC_EXTERN PetscErrorCode MatMFFDWPSetComputeNormU(Mat, PetscBool); 2146 2147 PETSC_EXTERN PetscErrorCode MatFDColoringSetType(MatFDColoring, MatMFFDType); 2148 2149 PETSC_EXTERN PetscErrorCode PetscViewerMathematicaPutMatrix(PetscViewer, PetscInt, PetscInt, PetscReal *); 2150 PETSC_EXTERN PetscErrorCode PetscViewerMathematicaPutCSRMatrix(PetscViewer, PetscInt, PetscInt, PetscInt *, PetscInt *, PetscReal *); 2151 2152 #ifdef PETSC_HAVE_H2OPUS 2153 PETSC_EXTERN_TYPEDEF typedef PetscScalar (*MatH2OpusKernel)(PetscInt, PetscReal[], PetscReal[], void *); 2154 PETSC_EXTERN PetscErrorCode MatCreateH2OpusFromKernel(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscReal[], PetscBool, MatH2OpusKernel, void *, PetscReal, PetscInt, PetscInt, Mat *); 2155 PETSC_EXTERN PetscErrorCode MatCreateH2OpusFromMat(Mat, PetscInt, const PetscReal[], PetscBool, PetscReal, PetscInt, PetscInt, PetscInt, PetscReal, Mat *); 2156 PETSC_EXTERN PetscErrorCode MatH2OpusSetSamplingMat(Mat, Mat, PetscInt, PetscReal); 2157 PETSC_EXTERN PetscErrorCode MatH2OpusOrthogonalize(Mat); 2158 PETSC_EXTERN PetscErrorCode MatH2OpusCompress(Mat, PetscReal); 2159 PETSC_EXTERN PetscErrorCode MatH2OpusSetNativeMult(Mat, PetscBool); 2160 PETSC_EXTERN PetscErrorCode MatH2OpusGetNativeMult(Mat, PetscBool *); 2161 PETSC_EXTERN PetscErrorCode MatH2OpusGetIndexMap(Mat, IS *); 2162 PETSC_EXTERN PetscErrorCode MatH2OpusMapVec(Mat, PetscBool, Vec, Vec *); 2163 PETSC_EXTERN PetscErrorCode MatH2OpusLowRankUpdate(Mat, Mat, Mat, PetscScalar); 2164 #endif 2165 2166 #ifdef PETSC_HAVE_HTOOL 2167 PETSC_EXTERN_TYPEDEF typedef PetscErrorCode (*MatHtoolKernel)(PetscInt, PetscInt, PetscInt, const PetscInt *, const PetscInt *, PetscScalar *, void *); 2168 PETSC_EXTERN PetscErrorCode MatCreateHtoolFromKernel(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscReal[], const PetscReal[], MatHtoolKernel, void *, Mat *); 2169 PETSC_EXTERN PetscErrorCode MatHtoolSetKernel(Mat, MatHtoolKernel, void *); 2170 PETSC_EXTERN PetscErrorCode MatHtoolGetPermutationSource(Mat, IS *); 2171 PETSC_EXTERN PetscErrorCode MatHtoolGetPermutationTarget(Mat, IS *); 2172 PETSC_EXTERN PetscErrorCode MatHtoolUsePermutation(Mat, PetscBool); 2173 2174 /*E 2175 MatHtoolCompressorType - Indicates the type of compressor used by a `MATHTOOL` 2176 2177 Values: 2178 + `MAT_HTOOL_COMPRESSOR_SYMPARTIAL_ACA` (default) - symmetric partial adaptive cross approximation 2179 . `MAT_HTOOL_COMPRESSOR_FULL_ACA` - full adaptive cross approximation 2180 - `MAT_HTOOL_COMPRESSOR_SVD` - singular value decomposition 2181 2182 Level: intermediate 2183 2184 .seealso: [](ch_matrices), `Mat`, `MatCreateHtoolFromKernel()`, `MATHTOOL`, `MatHtoolClusteringType` 2185 E*/ 2186 typedef enum { 2187 MAT_HTOOL_COMPRESSOR_SYMPARTIAL_ACA, 2188 MAT_HTOOL_COMPRESSOR_FULL_ACA, 2189 MAT_HTOOL_COMPRESSOR_SVD 2190 } MatHtoolCompressorType; 2191 2192 /*E 2193 MatHtoolClusteringType - Indicates the type of clustering used by a `MATHTOOL` 2194 2195 Values: 2196 + `MAT_HTOOL_CLUSTERING_PCA_REGULAR` (default) - axis computed via principle component analysis, split uniformly 2197 . `MAT_HTOOL_CLUSTERING_PCA_GEOMETRIC` - axis computed via principle component analysis, split barycentrically 2198 . `MAT_HTOOL_CLUSTERING_BOUNDING_BOX_1_REGULAR` - axis along the largest extent of the bounding box, split uniformly 2199 - `MAT_HTOOL_CLUSTERING_BOUNDING_BOX_1_GEOMETRIC` - axis along the largest extent of the bounding box, split barycentrically 2200 2201 Level: intermediate 2202 2203 Note: 2204 Higher-dimensional clustering is not yet supported in Htool, but once it is, one should add BOUNDING_BOX_{2,3} types 2205 2206 .seealso: [](ch_matrices), `Mat`, `MatCreateHtoolFromKernel()`, `MATHTOOL`, `MatHtoolCompressorType` 2207 E*/ 2208 typedef enum { 2209 MAT_HTOOL_CLUSTERING_PCA_REGULAR, 2210 MAT_HTOOL_CLUSTERING_PCA_GEOMETRIC, 2211 MAT_HTOOL_CLUSTERING_BOUNDING_BOX_1_REGULAR, 2212 MAT_HTOOL_CLUSTERING_BOUNDING_BOX_1_GEOMETRIC 2213 } MatHtoolClusteringType; 2214 #endif 2215 2216 #ifdef PETSC_HAVE_MUMPS 2217 PETSC_EXTERN PetscErrorCode MatMumpsSetIcntl(Mat, PetscInt, PetscInt); 2218 PETSC_EXTERN PetscErrorCode MatMumpsGetIcntl(Mat, PetscInt, PetscInt *); 2219 PETSC_EXTERN PetscErrorCode MatMumpsSetCntl(Mat, PetscInt, PetscReal); 2220 PETSC_EXTERN PetscErrorCode MatMumpsGetCntl(Mat, PetscInt, PetscReal *); 2221 2222 PETSC_EXTERN PetscErrorCode MatMumpsGetInfo(Mat, PetscInt, PetscInt *); 2223 PETSC_EXTERN PetscErrorCode MatMumpsGetInfog(Mat, PetscInt, PetscInt *); 2224 PETSC_EXTERN PetscErrorCode MatMumpsGetRinfo(Mat, PetscInt, PetscReal *); 2225 PETSC_EXTERN PetscErrorCode MatMumpsGetRinfog(Mat, PetscInt, PetscReal *); 2226 PETSC_EXTERN PetscErrorCode MatMumpsGetNullPivots(Mat, PetscInt *, PetscInt **); 2227 PETSC_EXTERN PetscErrorCode MatMumpsGetInverse(Mat, Mat); 2228 PETSC_EXTERN PetscErrorCode MatMumpsGetInverseTranspose(Mat, Mat); 2229 #endif 2230 2231 #ifdef PETSC_HAVE_MKL_PARDISO 2232 PETSC_EXTERN PetscErrorCode MatMkl_PardisoSetCntl(Mat, PetscInt, PetscInt); 2233 #endif 2234 2235 #ifdef PETSC_HAVE_MKL_CPARDISO 2236 PETSC_EXTERN PetscErrorCode MatMkl_CPardisoSetCntl(Mat, PetscInt, PetscInt); 2237 #endif 2238 2239 #ifdef PETSC_HAVE_SUPERLU 2240 PETSC_EXTERN PetscErrorCode MatSuperluSetILUDropTol(Mat, PetscReal); 2241 #endif 2242 2243 #ifdef PETSC_HAVE_SUPERLU_DIST 2244 PETSC_EXTERN PetscErrorCode MatSuperluDistGetDiagU(Mat, PetscScalar *); 2245 #endif 2246 2247 #ifdef PETSC_HAVE_STRUMPACK 2248 /*E 2249 MatSTRUMPACKReordering - sparsity reducing ordering to be used in `MATSOLVERSTRUMPACK`` 2250 2251 Values: 2252 + `MAT_STRUMPACK_NATURAL` - use the current ordering 2253 . `MAT_STRUMPACK_METIS` - use MeTis to compute an ordering 2254 . `MAT_STRUMPACK_PARMETIS` - use ParMeTis to compute an ordering 2255 . `MAT_STRUMPACK_SCOTCH` - use Scotch to compute an ordering 2256 . `MAT_STRUMPACK_PTSCOTCH` - use parallel Scotch to compute an ordering 2257 - `MAT_STRUMPACK_RCM` - use an RCM ordering 2258 2259 Level: intermediate 2260 2261 Developer Note: 2262 Should be called `MatSTRUMPACKReorderingType` 2263 2264 .seealso: `Mat`, `MATSOLVERSTRUMPACK`, `MatGetFactor()`, `MatSTRUMPACKSetHSSRelTol()`, `MatSTRUMPACKSetReordering()` 2265 E*/ 2266 typedef enum { 2267 MAT_STRUMPACK_NATURAL = 0, 2268 MAT_STRUMPACK_METIS = 1, 2269 MAT_STRUMPACK_PARMETIS = 2, 2270 MAT_STRUMPACK_SCOTCH = 3, 2271 MAT_STRUMPACK_PTSCOTCH = 4, 2272 MAT_STRUMPACK_RCM = 5 2273 } MatSTRUMPACKReordering; 2274 2275 PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetReordering(Mat, MatSTRUMPACKReordering); 2276 PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetColPerm(Mat, PetscBool); 2277 PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetHSSRelTol(Mat, PetscReal); 2278 PETSC_DEPRECATED_FUNCTION("Use MatSTRUMPACKSetHSSRelTol() (since version 3.9)") static inline PetscErrorCode MatSTRUMPACKSetHSSRelCompTol(Mat mat, PetscReal rtol) 2279 { 2280 return MatSTRUMPACKSetHSSRelTol(mat, rtol); 2281 } 2282 PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetHSSAbsTol(Mat, PetscReal); 2283 PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetHSSMinSepSize(Mat, PetscInt); 2284 PETSC_DEPRECATED_FUNCTION("Use MatSTRUMPACKSetHSSMinSepSize() (since version 3.9)") static inline PetscErrorCode MatSTRUMPACKSetHSSMinSize(Mat mat, PetscInt hssminsize) 2285 { 2286 return MatSTRUMPACKSetHSSMinSepSize(mat, hssminsize); 2287 } 2288 PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetHSSMaxRank(Mat, PetscInt); 2289 PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetHSSLeafSize(Mat, PetscInt); 2290 #endif 2291 2292 PETSC_EXTERN PetscErrorCode MatBindToCPU(Mat, PetscBool); 2293 PETSC_EXTERN PetscErrorCode MatBoundToCPU(Mat, PetscBool *); 2294 PETSC_DEPRECATED_FUNCTION("Use MatBindToCPU (since v3.13)") static inline PetscErrorCode MatPinToCPU(Mat A, PetscBool flg) 2295 { 2296 return MatBindToCPU(A, flg); 2297 } 2298 PETSC_EXTERN PetscErrorCode MatSetBindingPropagates(Mat, PetscBool); 2299 PETSC_EXTERN PetscErrorCode MatGetBindingPropagates(Mat, PetscBool *); 2300 2301 #ifdef PETSC_HAVE_CUDA 2302 /*E 2303 MatCUSPARSEStorageFormat - indicates the storage format for `MATAIJCUSPARSE` (GPU) 2304 matrices. 2305 2306 Values: 2307 + `MAT_CUSPARSE_CSR` - Compressed Sparse Row 2308 . `MAT_CUSPARSE_ELL` - Ellpack (requires CUDA 4.2 or later). 2309 - `MAT_CUSPARSE_HYB` - Hybrid, a combination of Ellpack and Coordinate format (requires CUDA 4.2 or later). 2310 2311 Level: intermediate 2312 2313 .seealso: [](ch_matrices), `MATAIJCUSPARSE`, `MatCUSPARSESetFormat()`, `MatCUSPARSEFormatOperation` 2314 E*/ 2315 2316 typedef enum { 2317 MAT_CUSPARSE_CSR, 2318 MAT_CUSPARSE_ELL, 2319 MAT_CUSPARSE_HYB 2320 } MatCUSPARSEStorageFormat; 2321 2322 /* these will be strings associated with enumerated type defined above */ 2323 PETSC_EXTERN const char *const MatCUSPARSEStorageFormats[]; 2324 2325 /*E 2326 MatCUSPARSEFormatOperation - indicates the operation of `MATAIJCUSPARSE` (GPU) 2327 matrices whose operation should use a particular storage format. 2328 2329 Values: 2330 + `MAT_CUSPARSE_MULT_DIAG` - sets the storage format for the diagonal matrix in the parallel MatMult 2331 . `MAT_CUSPARSE_MULT_OFFDIAG` - sets the storage format for the offdiagonal matrix in the parallel MatMult 2332 . `MAT_CUSPARSE_MULT` - sets the storage format for the entire matrix in the serial (single GPU) MatMult 2333 - `MAT_CUSPARSE_ALL` - sets the storage format for all `MATAIJCUSPARSE` (GPU) matrices 2334 2335 Level: intermediate 2336 2337 .seealso: [](ch_matrices), `MatCUSPARSESetFormat()`, `MatCUSPARSEStorageFormat` 2338 E*/ 2339 typedef enum { 2340 MAT_CUSPARSE_MULT_DIAG, 2341 MAT_CUSPARSE_MULT_OFFDIAG, 2342 MAT_CUSPARSE_MULT, 2343 MAT_CUSPARSE_ALL 2344 } MatCUSPARSEFormatOperation; 2345 2346 PETSC_EXTERN PetscErrorCode MatCreateSeqAIJCUSPARSE(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *); 2347 PETSC_EXTERN PetscErrorCode MatCreateAIJCUSPARSE(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *); 2348 PETSC_EXTERN PetscErrorCode MatCUSPARSESetFormat(Mat, MatCUSPARSEFormatOperation, MatCUSPARSEStorageFormat); 2349 PETSC_EXTERN PetscErrorCode MatCUSPARSESetUseCPUSolve(Mat, PetscBool); 2350 PETSC_EXTERN PetscErrorCode MatSeqAIJCUSPARSEGetIJ(Mat, PetscBool, const int **, const int **); 2351 PETSC_EXTERN PetscErrorCode MatSeqAIJCUSPARSERestoreIJ(Mat, PetscBool, const int **, const int **); 2352 PETSC_EXTERN PetscErrorCode MatSeqAIJCUSPARSEGetArrayRead(Mat, const PetscScalar **); 2353 PETSC_EXTERN PetscErrorCode MatSeqAIJCUSPARSERestoreArrayRead(Mat, const PetscScalar **); 2354 PETSC_EXTERN PetscErrorCode MatSeqAIJCUSPARSEGetArrayWrite(Mat, PetscScalar **); 2355 PETSC_EXTERN PetscErrorCode MatSeqAIJCUSPARSERestoreArrayWrite(Mat, PetscScalar **); 2356 PETSC_EXTERN PetscErrorCode MatSeqAIJCUSPARSEGetArray(Mat, PetscScalar **); 2357 PETSC_EXTERN PetscErrorCode MatSeqAIJCUSPARSERestoreArray(Mat, PetscScalar **); 2358 2359 PETSC_EXTERN PetscErrorCode MatCreateDenseCUDA(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscScalar[], Mat *); 2360 PETSC_EXTERN PetscErrorCode MatCreateSeqDenseCUDA(MPI_Comm, PetscInt, PetscInt, PetscScalar[], Mat *); 2361 PETSC_EXTERN PetscErrorCode MatDenseCUDAGetArrayWrite(Mat, PetscScalar **); 2362 PETSC_EXTERN PetscErrorCode MatDenseCUDAGetArrayRead(Mat, const PetscScalar **); 2363 PETSC_EXTERN PetscErrorCode MatDenseCUDAGetArray(Mat, PetscScalar **); 2364 PETSC_EXTERN PetscErrorCode MatDenseCUDARestoreArrayWrite(Mat, PetscScalar **); 2365 PETSC_EXTERN PetscErrorCode MatDenseCUDARestoreArrayRead(Mat, const PetscScalar **); 2366 PETSC_EXTERN PetscErrorCode MatDenseCUDARestoreArray(Mat, PetscScalar **); 2367 PETSC_EXTERN PetscErrorCode MatDenseCUDAPlaceArray(Mat, const PetscScalar *); 2368 PETSC_EXTERN PetscErrorCode MatDenseCUDAReplaceArray(Mat, const PetscScalar *); 2369 PETSC_EXTERN PetscErrorCode MatDenseCUDAResetArray(Mat); 2370 PETSC_EXTERN PetscErrorCode MatDenseCUDASetPreallocation(Mat, PetscScalar *); 2371 2372 PETSC_EXTERN PetscErrorCode MatCreateSeqSELLCUDA(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *); 2373 PETSC_EXTERN PetscErrorCode MatCreateSELLCUDA(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *); 2374 #endif 2375 2376 #ifdef PETSC_HAVE_HIP 2377 /*E 2378 MatHIPSPARSEStorageFormat - indicates the storage format for `MATAIJHIPSPARSE` (GPU) 2379 matrices. 2380 2381 Values: 2382 + `MAT_HIPSPARSE_CSR` - Compressed Sparse Row 2383 . `MAT_HIPSPARSE_ELL` - Ellpack 2384 - `MAT_HIPSPARSE_HYB` - Hybrid, a combination of Ellpack and Coordinate format 2385 2386 Level: intermediate 2387 2388 .seealso: [](ch_matrices), `MatHIPSPARSESetFormat()`, `MatHIPSPARSEFormatOperation` 2389 E*/ 2390 2391 typedef enum { 2392 MAT_HIPSPARSE_CSR, 2393 MAT_HIPSPARSE_ELL, 2394 MAT_HIPSPARSE_HYB 2395 } MatHIPSPARSEStorageFormat; 2396 2397 /* these will be strings associated with enumerated type defined above */ 2398 PETSC_EXTERN const char *const MatHIPSPARSEStorageFormats[]; 2399 2400 /*E 2401 MatHIPSPARSEFormatOperation - indicates the operation of `MATAIJHIPSPARSE` (GPU) 2402 matrices whose operation should use a particular storage format. 2403 2404 Values: 2405 + `MAT_HIPSPARSE_MULT_DIAG` - sets the storage format for the diagonal matrix in the parallel `MatMult()` 2406 . `MAT_HIPSPARSE_MULT_OFFDIAG` - sets the storage format for the offdiagonal matrix in the parallel `MatMult()` 2407 . `MAT_HIPSPARSE_MULT` - sets the storage format for the entire matrix in the serial (single GPU) `MatMult()` 2408 - `MAT_HIPSPARSE_ALL` - sets the storage format for all HIPSPARSE (GPU) matrices 2409 2410 Level: intermediate 2411 2412 .seealso: [](ch_matrices), `MatHIPSPARSESetFormat()`, `MatHIPSPARSEStorageFormat` 2413 E*/ 2414 typedef enum { 2415 MAT_HIPSPARSE_MULT_DIAG, 2416 MAT_HIPSPARSE_MULT_OFFDIAG, 2417 MAT_HIPSPARSE_MULT, 2418 MAT_HIPSPARSE_ALL 2419 } MatHIPSPARSEFormatOperation; 2420 2421 PETSC_EXTERN PetscErrorCode MatCreateSeqAIJHIPSPARSE(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *); 2422 PETSC_EXTERN PetscErrorCode MatCreateAIJHIPSPARSE(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *); 2423 PETSC_EXTERN PetscErrorCode MatHIPSPARSESetFormat(Mat, MatHIPSPARSEFormatOperation, MatHIPSPARSEStorageFormat); 2424 PETSC_EXTERN PetscErrorCode MatHIPSPARSESetUseCPUSolve(Mat, PetscBool); 2425 PETSC_EXTERN PetscErrorCode MatSeqAIJHIPSPARSEGetIJ(Mat, PetscBool, const int **, const int **); 2426 PETSC_EXTERN PetscErrorCode MatSeqAIJHIPSPARSERestoreIJ(Mat, PetscBool, const int **, const int **); 2427 PETSC_EXTERN PetscErrorCode MatSeqAIJHIPSPARSEGetArrayRead(Mat, const PetscScalar **); 2428 PETSC_EXTERN PetscErrorCode MatSeqAIJHIPSPARSERestoreArrayRead(Mat, const PetscScalar **); 2429 PETSC_EXTERN PetscErrorCode MatSeqAIJHIPSPARSEGetArrayWrite(Mat, PetscScalar **); 2430 PETSC_EXTERN PetscErrorCode MatSeqAIJHIPSPARSERestoreArrayWrite(Mat, PetscScalar **); 2431 PETSC_EXTERN PetscErrorCode MatSeqAIJHIPSPARSEGetArray(Mat, PetscScalar **); 2432 PETSC_EXTERN PetscErrorCode MatSeqAIJHIPSPARSERestoreArray(Mat, PetscScalar **); 2433 2434 PETSC_EXTERN PetscErrorCode MatCreateDenseHIP(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscScalar[], Mat *); 2435 PETSC_EXTERN PetscErrorCode MatCreateSeqDenseHIP(MPI_Comm, PetscInt, PetscInt, PetscScalar[], Mat *); 2436 PETSC_EXTERN PetscErrorCode MatDenseHIPGetArrayWrite(Mat, PetscScalar **); 2437 PETSC_EXTERN PetscErrorCode MatDenseHIPGetArrayRead(Mat, const PetscScalar **); 2438 PETSC_EXTERN PetscErrorCode MatDenseHIPGetArray(Mat, PetscScalar **); 2439 PETSC_EXTERN PetscErrorCode MatDenseHIPRestoreArrayWrite(Mat, PetscScalar **); 2440 PETSC_EXTERN PetscErrorCode MatDenseHIPRestoreArrayRead(Mat, const PetscScalar **); 2441 PETSC_EXTERN PetscErrorCode MatDenseHIPRestoreArray(Mat, PetscScalar **); 2442 PETSC_EXTERN PetscErrorCode MatDenseHIPPlaceArray(Mat, const PetscScalar *); 2443 PETSC_EXTERN PetscErrorCode MatDenseHIPReplaceArray(Mat, const PetscScalar *); 2444 PETSC_EXTERN PetscErrorCode MatDenseHIPResetArray(Mat); 2445 PETSC_EXTERN PetscErrorCode MatDenseHIPSetPreallocation(Mat, PetscScalar *); 2446 #endif 2447 2448 #if defined(PETSC_HAVE_VIENNACL) 2449 PETSC_EXTERN PetscErrorCode MatCreateSeqAIJViennaCL(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *); 2450 PETSC_EXTERN PetscErrorCode MatCreateAIJViennaCL(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *); 2451 #endif 2452 2453 #if defined(PETSC_HAVE_FFTW) 2454 PETSC_EXTERN PetscErrorCode VecScatterPetscToFFTW(Mat, Vec, Vec); 2455 PETSC_EXTERN PetscErrorCode VecScatterFFTWToPetsc(Mat, Vec, Vec); 2456 PETSC_EXTERN PetscErrorCode MatCreateVecsFFTW(Mat, Vec *, Vec *, Vec *); 2457 #endif 2458 2459 #if defined(PETSC_HAVE_SCALAPACK) 2460 PETSC_EXTERN PetscErrorCode MatCreateScaLAPACK(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, Mat *); 2461 PETSC_EXTERN PetscErrorCode MatScaLAPACKSetBlockSizes(Mat, PetscInt, PetscInt); 2462 PETSC_EXTERN PetscErrorCode MatScaLAPACKGetBlockSizes(Mat, PetscInt *, PetscInt *); 2463 #endif 2464 2465 PETSC_EXTERN PetscErrorCode MatCreateNest(MPI_Comm, PetscInt, const IS[], PetscInt, const IS[], const Mat[], Mat *); 2466 PETSC_EXTERN PetscErrorCode MatNestGetSize(Mat, PetscInt *, PetscInt *); 2467 PETSC_EXTERN PetscErrorCode MatNestGetISs(Mat, IS[], IS[]); 2468 PETSC_EXTERN PetscErrorCode MatNestGetLocalISs(Mat, IS[], IS[]); 2469 PETSC_EXTERN PetscErrorCode MatNestGetSubMats(Mat, PetscInt *, PetscInt *, Mat ***); 2470 PETSC_EXTERN PetscErrorCode MatNestGetSubMat(Mat, PetscInt, PetscInt, Mat *); 2471 PETSC_EXTERN PetscErrorCode MatNestSetVecType(Mat, VecType); 2472 PETSC_EXTERN PetscErrorCode MatNestSetSubMats(Mat, PetscInt, const IS[], PetscInt, const IS[], const Mat[]); 2473 PETSC_EXTERN PetscErrorCode MatNestSetSubMat(Mat, PetscInt, PetscInt, Mat); 2474 2475 PETSC_EXTERN PetscErrorCode MatChop(Mat, PetscReal); 2476 PETSC_EXTERN PetscErrorCode MatComputeBandwidth(Mat, PetscReal, PetscInt *); 2477 2478 PETSC_EXTERN PetscErrorCode MatSubdomainsCreateCoalesce(Mat, PetscInt, PetscInt *, IS **); 2479 2480 PETSC_EXTERN PetscErrorCode MatPreallocatorPreallocate(Mat, PetscBool, Mat); 2481 2482 PETSC_INTERN PetscErrorCode MatHeaderMerge(Mat, Mat *); 2483 PETSC_EXTERN PetscErrorCode MatHeaderReplace(Mat, Mat *); 2484 2485 PETSC_EXTERN PetscErrorCode MatSeqAIJGetCSRAndMemType(Mat, const PetscInt **, const PetscInt **, PetscScalar **, PetscMemType *); 2486 2487 PETSC_EXTERN PetscErrorCode MatCreateGraph(Mat, PetscBool, PetscBool, PetscReal, Mat *); 2488 PETSC_EXTERN PetscErrorCode MatEliminateZeros(Mat); 2489 2490 PETSC_EXTERN PetscErrorCode MatCreateDenseFromVecType(MPI_Comm, VecType, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, PetscScalar *, Mat *); 2491 #endif 2492