1 /* 2 Include file for the matrix component of PETSc 3 */ 4 #ifndef __PETSCMAT_H 5 #define __PETSCMAT_H 6 #include <petscvec.h> 7 8 /*S 9 Mat - Abstract PETSc matrix object used to manage all linear operators in PETSc, even those without 10 an explicit sparse representation (such as matrix-free operators) 11 12 Level: beginner 13 14 Concepts: matrix; linear operator 15 16 .seealso: MatCreate(), MatType, MatSetType(), MatDestroy() 17 S*/ 18 typedef struct _p_Mat* Mat; 19 20 /*J 21 MatType - String with the name of a PETSc matrix type 22 23 Level: beginner 24 25 .seealso: MatSetType(), Mat, MatSolverType, MatRegister() 26 J*/ 27 typedef const char* MatType; 28 #define MATSAME "same" 29 #define MATMAIJ "maij" 30 #define MATSEQMAIJ "seqmaij" 31 #define MATMPIMAIJ "mpimaij" 32 #define MATIS "is" 33 #define MATAIJ "aij" 34 #define MATSEQAIJ "seqaij" 35 #define MATMPIAIJ "mpiaij" 36 #define MATAIJCRL "aijcrl" 37 #define MATSEQAIJCRL "seqaijcrl" 38 #define MATMPIAIJCRL "mpiaijcrl" 39 #define MATAIJCUSPARSE "aijcusparse" 40 #define MATSEQAIJCUSPARSE "seqaijcusparse" 41 #define MATMPIAIJCUSPARSE "mpiaijcusparse" 42 #define MATAIJVIENNACL "aijviennacl" 43 #define MATSEQAIJVIENNACL "seqaijviennacl" 44 #define MATMPIAIJVIENNACL "mpiaijviennacl" 45 #define MATAIJPERM "aijperm" 46 #define MATSEQAIJPERM "seqaijperm" 47 #define MATMPIAIJPERM "mpiaijperm" 48 #define MATAIJSELL "aijsell" 49 #define MATSEQAIJSELL "seqaijsell" 50 #define MATMPIAIJSELL "mpiaijsell" 51 #define MATAIJMKL "aijmkl" 52 #define MATSEQAIJMKL "seqaijmkl" 53 #define MATMPIAIJMKL "mpiaijmkl" 54 #define MATBAIJMKL "baijmkl" 55 #define MATSEQBAIJMKL "seqbaijmkl" 56 #define MATMPIBAIJMKL "mpibaijmkl" 57 #define MATSHELL "shell" 58 #define MATDENSE "dense" 59 #define MATSEQDENSE "seqdense" 60 #define MATMPIDENSE "mpidense" 61 #define MATELEMENTAL "elemental" 62 #define MATBAIJ "baij" 63 #define MATSEQBAIJ "seqbaij" 64 #define MATMPIBAIJ "mpibaij" 65 #define MATMPIADJ "mpiadj" 66 #define MATSBAIJ "sbaij" 67 #define MATSEQSBAIJ "seqsbaij" 68 #define MATMPISBAIJ "mpisbaij" 69 #define MATDAAD "daad" 70 #define MATMFFD "mffd" 71 #define MATNORMAL "normal" 72 #define MATNORMALHERMITIAN "normalh" 73 #define MATLRC "lrc" 74 #define MATSCATTER "scatter" 75 #define MATBLOCKMAT "blockmat" 76 #define MATCOMPOSITE "composite" 77 #define MATFFT "fft" 78 #define MATFFTW "fftw" 79 #define MATSEQCUFFT "seqcufft" 80 #define MATTRANSPOSEMAT "transpose" 81 #define MATSCHURCOMPLEMENT "schurcomplement" 82 #define MATPYTHON "python" 83 #define MATHYPRE "hypre" 84 #define MATHYPRESTRUCT "hyprestruct" 85 #define MATHYPRESSTRUCT "hypresstruct" 86 #define MATSUBMATRIX "submatrix" 87 #define MATLOCALREF "localref" 88 #define MATNEST "nest" 89 #define MATPREALLOCATOR "preallocator" 90 #define MATSELL "sell" 91 #define MATSEQSELL "seqsell" 92 #define MATMPISELL "mpisell" 93 #define MATDUMMY "dummy" 94 #define MATLMVM "lmvm" 95 #define MATLMVMDFP "lmvmdfp" 96 #define MATLMVMBFGS "lmvmbfgs" 97 #define MATLMVMSR1 "lmvmsr1" 98 #define MATLMVMBRDN "lmvmbrdn" 99 #define MATLMVMBADBRDN "lmvmbadbrdn" 100 #define MATLMVMSYMBRDN "lmvmsymbrdn" 101 #define MATLMVMSYMBADBRDN "lmvmsymbadbrdn" 102 #define MATLMVMDIAGBRDN "lmvmdiagbrdn" 103 104 /*J 105 MatSolverType - String with the name of a PETSc matrix solver type. 106 107 For example: "petsc" indicates what PETSc provides, "superlu_dist" the parallel SuperLU_DIST package etc 108 109 Level: beginner 110 111 .seealso: MatGetFactor(), Mat, MatSetType(), MatType 112 J*/ 113 typedef const char* MatSolverType; 114 #define MATSOLVERSUPERLU "superlu" 115 #define MATSOLVERSUPERLU_DIST "superlu_dist" 116 #define MATSOLVERSTRUMPACK "strumpack" 117 #define MATSOLVERUMFPACK "umfpack" 118 #define MATSOLVERCHOLMOD "cholmod" 119 #define MATSOLVERKLU "klu" 120 #define MATSOLVERSPARSEELEMENTAL "sparseelemental" 121 #define MATSOLVERELEMENTAL "elemental" 122 #define MATSOLVERESSL "essl" 123 #define MATSOLVERLUSOL "lusol" 124 #define MATSOLVERMUMPS "mumps" 125 #define MATSOLVERMKL_PARDISO "mkl_pardiso" 126 #define MATSOLVERMKL_CPARDISO "mkl_cpardiso" 127 #define MATSOLVERPASTIX "pastix" 128 #define MATSOLVERMATLAB "matlab" 129 #define MATSOLVERPETSC "petsc" 130 #define MATSOLVERBAS "bas" 131 #define MATSOLVERCUSPARSE "cusparse" 132 133 /*E 134 MatFactorType - indicates what type of factorization is requested 135 136 Level: beginner 137 138 Any additions/changes here MUST also be made in include/petsc/finclude/petscmat.h 139 140 .seealso: MatSolverType, MatGetFactor() 141 E*/ 142 typedef enum {MAT_FACTOR_NONE, MAT_FACTOR_LU, MAT_FACTOR_CHOLESKY, MAT_FACTOR_ILU, MAT_FACTOR_ICC,MAT_FACTOR_ILUDT} MatFactorType; 143 PETSC_EXTERN const char *const MatFactorTypes[]; 144 145 PETSC_EXTERN PetscErrorCode MatGetFactor(Mat,MatSolverType,MatFactorType,Mat*); 146 PETSC_EXTERN PetscErrorCode MatGetFactorAvailable(Mat,MatSolverType,MatFactorType,PetscBool *); 147 PETSC_EXTERN PetscErrorCode MatFactorGetSolverType(Mat,MatSolverType*); 148 PETSC_EXTERN PetscErrorCode MatGetFactorType(Mat,MatFactorType*); 149 PETSC_EXTERN PetscErrorCode MatSetFactorType(Mat,MatFactorType); 150 PETSC_EXTERN PetscErrorCode MatSolverTypeRegister(MatSolverType,MatType,MatFactorType,PetscErrorCode(*)(Mat,MatFactorType,Mat*)); 151 PETSC_EXTERN PetscErrorCode MatSolverTypeGet(MatSolverType,MatType,MatFactorType,PetscBool*,PetscBool*,PetscErrorCode (**)(Mat,MatFactorType,Mat*)); 152 typedef MatSolverType MatSolverPackage PETSC_DEPRECATED("Use MatSolverType"); 153 PETSC_DEPRECATED("Use MatSolverTypeRegister()") PETSC_STATIC_INLINE PetscErrorCode MatSolverPackageRegister(MatSolverType stype,MatType mtype,MatFactorType ftype,PetscErrorCode(*f)(Mat,MatFactorType,Mat*)) 154 { return MatSolverTypeRegister(stype,mtype,ftype,f); } 155 PETSC_DEPRECATED("Use MatSolverTypeGet()") PETSC_STATIC_INLINE PetscErrorCode MatSolverPackageGet(MatSolverType stype,MatType mtype,MatFactorType ftype,PetscBool *foundmtype,PetscBool *foundstype,PetscErrorCode(**f)(Mat,MatFactorType,Mat*)) 156 { return MatSolverTypeGet(stype,mtype,ftype,foundmtype,foundstype,f); } 157 158 /* Logging support */ 159 #define MAT_FILE_CLASSID 1211216 /* used to indicate matrices in binary files */ 160 PETSC_EXTERN PetscClassId MAT_CLASSID; 161 PETSC_EXTERN PetscClassId MAT_COLORING_CLASSID; 162 PETSC_EXTERN PetscClassId MAT_FDCOLORING_CLASSID; 163 PETSC_EXTERN PetscClassId MAT_TRANSPOSECOLORING_CLASSID; 164 PETSC_EXTERN PetscClassId MAT_PARTITIONING_CLASSID; 165 PETSC_EXTERN PetscClassId MAT_COARSEN_CLASSID; 166 PETSC_EXTERN PetscClassId MAT_NULLSPACE_CLASSID; 167 PETSC_EXTERN PetscClassId MATMFFD_CLASSID; 168 169 /*E 170 MatReuse - Indicates if matrices obtained from a previous call to MatCreateSubMatrices(), MatCreateSubMatrix(), MatConvert() or several other functions 171 are to be reused to store the new matrix values. 172 173 $ MAT_INITIAL_MATRIX - create a new matrix 174 $ MAT_REUSE_MATRIX - reuse the matrix created with a previous call that used MAT_INITIAL_MATRIX 175 $ MAT_INPLACE_MATRIX - replace the first input matrix with the new matrix (not applicable to all functions) 176 $ MAT_IGNORE_MATRIX - do not create a new matrix or reuse a give matrix, just ignore that matrix argument (not applicable to all functions) 177 178 Level: beginner 179 180 Any additions/changes here MUST also be made in include/petsc/finclude/petscmat.h 181 182 .seealso: MatCreateSubMatrices(), MatCreateSubMatrix(), MatDestroyMatrices(), MatConvert() 183 E*/ 184 typedef enum {MAT_INITIAL_MATRIX,MAT_REUSE_MATRIX,MAT_IGNORE_MATRIX,MAT_INPLACE_MATRIX} MatReuse; 185 186 /*E 187 MatCreateSubMatrixOption - Indicates if matrices obtained from a call to MatCreateSubMatrices() 188 include the matrix values. Currently it is only used by MatGetSeqNonzerostructure(). 189 190 Level: beginner 191 192 .seealso: MatGetSeqNonzerostructure() 193 E*/ 194 typedef enum {MAT_DO_NOT_GET_VALUES,MAT_GET_VALUES} MatCreateSubMatrixOption; 195 196 PETSC_EXTERN PetscErrorCode MatInitializePackage(void); 197 198 PETSC_EXTERN PetscErrorCode MatCreate(MPI_Comm,Mat*); 199 PETSC_EXTERN PetscErrorCode MatSetSizes(Mat,PetscInt,PetscInt,PetscInt,PetscInt); 200 PETSC_EXTERN PetscErrorCode MatSetType(Mat,MatType); 201 PETSC_EXTERN PetscErrorCode MatSetFromOptions(Mat); 202 PETSC_STATIC_INLINE PetscErrorCode MatViewFromOptions(Mat A,PetscObject obj,const char name[]) {return PetscObjectViewFromOptions((PetscObject)A,obj,name);} 203 PETSC_EXTERN PetscErrorCode MatRegister(const char[],PetscErrorCode(*)(Mat)); 204 PETSC_EXTERN PetscErrorCode MatRegisterRootName(const char[],const char[],const char[]); 205 PETSC_EXTERN PetscErrorCode MatSetOptionsPrefix(Mat,const char[]); 206 PETSC_EXTERN PetscErrorCode MatAppendOptionsPrefix(Mat,const char[]); 207 PETSC_EXTERN PetscErrorCode MatGetOptionsPrefix(Mat,const char*[]); 208 PETSC_EXTERN PetscErrorCode MatSetErrorIfFailure(Mat,PetscBool); 209 210 PETSC_EXTERN PetscFunctionList MatList; 211 PETSC_EXTERN PetscFunctionList MatColoringList; 212 PETSC_EXTERN PetscFunctionList MatPartitioningList; 213 214 /*E 215 MatStructure - Indicates if two matrices have the same nonzero structure 216 217 Level: beginner 218 219 Any additions/changes here MUST also be made in include/petsc/finclude/petscmat.h 220 221 .seealso: MatCopy(), MatAXPY() 222 E*/ 223 typedef enum {DIFFERENT_NONZERO_PATTERN,SUBSET_NONZERO_PATTERN,SAME_NONZERO_PATTERN} MatStructure; 224 225 #if defined PETSC_HAVE_MKL_SPARSE 226 PETSC_EXTERN PetscErrorCode MatCreateSeqAIJMKL(MPI_Comm,PetscInt,PetscInt,PetscInt,const PetscInt[],Mat*); 227 PETSC_EXTERN PetscErrorCode MatCreateMPIAIJMKL(MPI_Comm,PetscInt,PetscInt,PetscInt,PetscInt,PetscInt,const PetscInt[],PetscInt,const PetscInt[],Mat*); 228 PETSC_EXTERN PetscErrorCode MatCreateBAIJMKL(MPI_Comm,PetscInt,PetscInt,PetscInt,PetscInt,PetscInt,PetscInt,const PetscInt[],PetscInt,const PetscInt[],Mat*); 229 PETSC_EXTERN PetscErrorCode MatCreateSeqBAIJMKL(MPI_Comm,PetscInt,PetscInt,PetscInt,PetscInt,const PetscInt[],Mat*); 230 #endif 231 232 PETSC_EXTERN PetscErrorCode MatCreateSeqSELL(MPI_Comm,PetscInt,PetscInt,PetscInt,const PetscInt[],Mat*); 233 PETSC_EXTERN PetscErrorCode MatCreateSELL(MPI_Comm,PetscInt,PetscInt,PetscInt,PetscInt,PetscInt,const PetscInt[],PetscInt,const PetscInt[],Mat*); 234 PETSC_EXTERN PetscErrorCode MatSeqSELLSetPreallocation(Mat,PetscInt,const PetscInt[]); 235 PETSC_EXTERN PetscErrorCode MatMPISELLSetPreallocation(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[]); 236 237 PETSC_EXTERN PetscErrorCode MatCreateSeqDense(MPI_Comm,PetscInt,PetscInt,PetscScalar[],Mat*); 238 PETSC_EXTERN PetscErrorCode MatCreateDense(MPI_Comm,PetscInt,PetscInt,PetscInt,PetscInt,PetscScalar[],Mat*); 239 PETSC_EXTERN PetscErrorCode MatCreateSeqAIJ(MPI_Comm,PetscInt,PetscInt,PetscInt,const PetscInt[],Mat*); 240 PETSC_EXTERN PetscErrorCode MatCreateAIJ(MPI_Comm,PetscInt,PetscInt,PetscInt,PetscInt,PetscInt,const PetscInt[],PetscInt,const PetscInt[],Mat*); 241 PETSC_EXTERN PetscErrorCode MatCreateMPIAIJWithArrays(MPI_Comm,PetscInt,PetscInt,PetscInt,PetscInt,const PetscInt[],const PetscInt[],const PetscScalar[],Mat *); 242 PETSC_EXTERN PetscErrorCode MatCreateMPIAIJWithSplitArrays(MPI_Comm,PetscInt,PetscInt,PetscInt,PetscInt,PetscInt[],PetscInt[],PetscScalar[],PetscInt[],PetscInt[],PetscScalar[],Mat*); 243 PETSC_EXTERN PetscErrorCode MatCreateMPIAIJWithSeqAIJ(MPI_Comm,Mat,Mat,const PetscInt[],Mat*); 244 245 PETSC_EXTERN PetscErrorCode MatCreateSeqBAIJ(MPI_Comm,PetscInt,PetscInt,PetscInt,PetscInt,const PetscInt[],Mat*); 246 PETSC_EXTERN PetscErrorCode MatCreateBAIJ(MPI_Comm,PetscInt,PetscInt,PetscInt,PetscInt,PetscInt,PetscInt,const PetscInt[],PetscInt,const PetscInt[],Mat*); 247 PETSC_EXTERN PetscErrorCode MatCreateMPIBAIJWithArrays(MPI_Comm,PetscInt,PetscInt,PetscInt,PetscInt,PetscInt,const PetscInt[],const PetscInt[],const PetscScalar[],Mat*); 248 249 PETSC_EXTERN PetscErrorCode MatCreateMPIAdj(MPI_Comm,PetscInt,PetscInt,PetscInt[],PetscInt[],PetscInt[],Mat*); 250 PETSC_EXTERN PetscErrorCode MatCreateSeqSBAIJ(MPI_Comm,PetscInt,PetscInt,PetscInt,PetscInt,const PetscInt[],Mat*); 251 252 PETSC_EXTERN PetscErrorCode MatCreateSBAIJ(MPI_Comm,PetscInt,PetscInt,PetscInt,PetscInt,PetscInt,PetscInt,const PetscInt[],PetscInt,const PetscInt[],Mat*); 253 PETSC_EXTERN PetscErrorCode MatCreateMPISBAIJWithArrays(MPI_Comm,PetscInt,PetscInt,PetscInt,PetscInt,PetscInt,const PetscInt[],const PetscInt[],const PetscScalar[],Mat *); 254 PETSC_EXTERN PetscErrorCode MatSeqSBAIJSetPreallocationCSR(Mat,PetscInt,const PetscInt[],const PetscInt[],const PetscScalar[]); 255 PETSC_EXTERN PetscErrorCode MatMPISBAIJSetPreallocationCSR(Mat,PetscInt,const PetscInt[],const PetscInt[],const PetscScalar[]); 256 PETSC_EXTERN PetscErrorCode MatXAIJSetPreallocation(Mat,PetscInt,const PetscInt[],const PetscInt[],const PetscInt[],const PetscInt[]); 257 258 PETSC_EXTERN PetscErrorCode MatCreateShell(MPI_Comm,PetscInt,PetscInt,PetscInt,PetscInt,void *,Mat*); 259 PETSC_EXTERN PetscErrorCode MatCreateNormal(Mat,Mat*); 260 PETSC_EXTERN PetscErrorCode MatCreateNormalHermitian(Mat,Mat*); 261 PETSC_EXTERN PetscErrorCode MatCreateLRC(Mat,Mat,Vec,Mat,Mat*); 262 PETSC_EXTERN PetscErrorCode MatLRCGetMats(Mat,Mat*,Mat*,Vec*,Mat*); 263 PETSC_EXTERN PetscErrorCode MatCreateIS(MPI_Comm,PetscInt,PetscInt,PetscInt,PetscInt,PetscInt,ISLocalToGlobalMapping,ISLocalToGlobalMapping,Mat*); 264 PETSC_EXTERN PetscErrorCode MatCreateSeqAIJCRL(MPI_Comm,PetscInt,PetscInt,PetscInt,const PetscInt[],Mat*); 265 PETSC_EXTERN PetscErrorCode MatCreateMPIAIJCRL(MPI_Comm,PetscInt,PetscInt,PetscInt,const PetscInt[],PetscInt,const PetscInt[],Mat*); 266 267 PETSC_EXTERN PetscErrorCode MatCreateScatter(MPI_Comm,VecScatter,Mat*); 268 PETSC_EXTERN PetscErrorCode MatScatterSetVecScatter(Mat,VecScatter); 269 PETSC_EXTERN PetscErrorCode MatScatterGetVecScatter(Mat,VecScatter*); 270 PETSC_EXTERN PetscErrorCode MatCreateBlockMat(MPI_Comm,PetscInt,PetscInt,PetscInt,PetscInt,PetscInt*,Mat*); 271 PETSC_EXTERN PetscErrorCode MatCompositeAddMat(Mat,Mat); 272 PETSC_EXTERN PetscErrorCode MatCompositeMerge(Mat); 273 PETSC_EXTERN PetscErrorCode MatCreateComposite(MPI_Comm,PetscInt,const Mat*,Mat*); 274 typedef enum {MAT_COMPOSITE_ADDITIVE,MAT_COMPOSITE_MULTIPLICATIVE} MatCompositeType; 275 PETSC_EXTERN PetscErrorCode MatCompositeSetType(Mat,MatCompositeType); 276 277 PETSC_EXTERN PetscErrorCode MatCreateFFT(MPI_Comm,PetscInt,const PetscInt[],MatType,Mat*); 278 PETSC_EXTERN PetscErrorCode MatCreateSeqCUFFT(MPI_Comm,PetscInt,const PetscInt[],Mat*); 279 280 PETSC_EXTERN PetscErrorCode MatCreateTranspose(Mat,Mat*); 281 PETSC_EXTERN PetscErrorCode MatTransposeGetMat(Mat,Mat*); 282 PETSC_EXTERN PetscErrorCode MatCreateHermitianTranspose(Mat,Mat*); 283 PETSC_EXTERN PetscErrorCode MatHermitianTransposeGetMat(Mat,Mat*); 284 PETSC_EXTERN PetscErrorCode MatCreateSubMatrixVirtual(Mat,IS,IS,Mat*); 285 PETSC_EXTERN PetscErrorCode MatSubMatrixVirtualUpdate(Mat,Mat,IS,IS); 286 PETSC_EXTERN PetscErrorCode MatCreateLocalRef(Mat,IS,IS,Mat*); 287 288 #if defined(PETSC_HAVE_HYPRE) 289 PETSC_EXTERN PetscErrorCode MatHYPRESetPreallocation(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[]); 290 #endif 291 292 PETSC_EXTERN PetscErrorCode MatPythonSetType(Mat,const char[]); 293 294 PETSC_EXTERN PetscErrorCode MatResetPreallocation(Mat); 295 PETSC_EXTERN PetscErrorCode MatSetUp(Mat); 296 PETSC_EXTERN PetscErrorCode MatDestroy(Mat*); 297 PETSC_EXTERN PetscErrorCode MatGetNonzeroState(Mat,PetscObjectState*); 298 299 PETSC_EXTERN PetscErrorCode MatConjugate(Mat); 300 PETSC_EXTERN PetscErrorCode MatRealPart(Mat); 301 PETSC_EXTERN PetscErrorCode MatImaginaryPart(Mat); 302 PETSC_EXTERN PetscErrorCode MatGetDiagonalBlock(Mat,Mat*); 303 PETSC_EXTERN PetscErrorCode MatGetTrace(Mat,PetscScalar*); 304 PETSC_EXTERN PetscErrorCode MatInvertBlockDiagonal(Mat,const PetscScalar **); 305 PETSC_EXTERN PetscErrorCode MatInvertVariableBlockDiagonal(Mat,PetscInt,const PetscInt*,PetscScalar*); 306 PETSC_EXTERN PetscErrorCode MatInvertBlockDiagonalMat(Mat,Mat); 307 308 /* ------------------------------------------------------------*/ 309 PETSC_EXTERN PetscErrorCode MatSetValues(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode); 310 PETSC_EXTERN PetscErrorCode MatSetValuesBlocked(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode); 311 PETSC_EXTERN PetscErrorCode MatSetValuesRow(Mat,PetscInt,const PetscScalar[]); 312 PETSC_EXTERN PetscErrorCode MatSetValuesRowLocal(Mat,PetscInt,const PetscScalar[]); 313 PETSC_EXTERN PetscErrorCode MatSetValuesBatch(Mat,PetscInt,PetscInt,PetscInt[],const PetscScalar[]); 314 PETSC_EXTERN PetscErrorCode MatSetRandom(Mat,PetscRandom); 315 316 /*S 317 MatStencil - Data structure (C struct) for storing information about a single row or 318 column of a matrix as indexed on an associated grid. These are arguments to MatSetStencil() and MatSetBlockStencil() 319 320 The i,j, and k represent the logical coordinates over the entire grid (for 2 and 1 dimensional problems the k and j entries are ignored). 321 The c represents the the degrees of freedom at each grid point (the dof argument to DMDASetDOF()). If dof is 1 then this entry is ignored. 322 323 For stencil access to vectors see DMDAVecGetArray(), DMDAVecGetArrayF90(). 324 325 Fortran usage is different, see MatSetValuesStencil() for details. 326 327 Level: beginner 328 329 Concepts: matrix; linear operator 330 331 .seealso: MatSetValuesStencil(), MatSetStencil(), MatSetValuesBlockedStencil(), DMDAVecGetArray(), DMDAVecGetArrayF90() 332 S*/ 333 typedef struct { 334 PetscInt k,j,i,c; 335 } MatStencil; 336 337 PETSC_EXTERN PetscErrorCode MatSetValuesStencil(Mat,PetscInt,const MatStencil[],PetscInt,const MatStencil[],const PetscScalar[],InsertMode); 338 PETSC_EXTERN PetscErrorCode MatSetValuesBlockedStencil(Mat,PetscInt,const MatStencil[],PetscInt,const MatStencil[],const PetscScalar[],InsertMode); 339 PETSC_EXTERN PetscErrorCode MatSetStencil(Mat,PetscInt,const PetscInt[],const PetscInt[],PetscInt); 340 341 /*E 342 MatAssemblyType - Indicates if the matrix is now to be used, or if you plan 343 to continue to add or insert values to it 344 345 Level: beginner 346 347 .seealso: MatAssemblyBegin(), MatAssemblyEnd() 348 E*/ 349 typedef enum {MAT_FLUSH_ASSEMBLY=1,MAT_FINAL_ASSEMBLY=0} MatAssemblyType; 350 PETSC_EXTERN PetscErrorCode MatAssemblyBegin(Mat,MatAssemblyType); 351 PETSC_EXTERN PetscErrorCode MatAssemblyEnd(Mat,MatAssemblyType); 352 PETSC_EXTERN PetscErrorCode MatAssembled(Mat,PetscBool *); 353 354 355 356 /*E 357 MatOption - Options that may be set for a matrix and its behavior or storage 358 359 Level: beginner 360 361 Any additions/changes here MUST also be made in include/petsc/finclude/petscmat.h 362 Any additions/changes here must also be made in src/mat/interface/dlregismat.c in MatOptions[] 363 364 Developer Notes: 365 Entries that are negative need not be called collectively by all processes. 366 367 .seealso: MatSetOption() 368 E*/ 369 typedef enum {MAT_OPTION_MIN = -3, 370 MAT_UNUSED_NONZERO_LOCATION_ERR = -2, 371 MAT_ROW_ORIENTED = -1, 372 MAT_SYMMETRIC = 1, 373 MAT_STRUCTURALLY_SYMMETRIC = 2, 374 MAT_NEW_DIAGONALS = 3, 375 MAT_IGNORE_OFF_PROC_ENTRIES = 4, 376 MAT_USE_HASH_TABLE = 5, 377 MAT_KEEP_NONZERO_PATTERN = 6, 378 MAT_IGNORE_ZERO_ENTRIES = 7, 379 MAT_USE_INODES = 8, 380 MAT_HERMITIAN = 9, 381 MAT_SYMMETRY_ETERNAL = 10, 382 MAT_NEW_NONZERO_LOCATION_ERR = 11, 383 MAT_IGNORE_LOWER_TRIANGULAR = 12, 384 MAT_ERROR_LOWER_TRIANGULAR = 13, 385 MAT_GETROW_UPPERTRIANGULAR = 14, 386 MAT_SPD = 15, 387 MAT_NO_OFF_PROC_ZERO_ROWS = 16, 388 MAT_NO_OFF_PROC_ENTRIES = 17, 389 MAT_NEW_NONZERO_LOCATIONS = 18, 390 MAT_NEW_NONZERO_ALLOCATION_ERR = 19, 391 MAT_SUBSET_OFF_PROC_ENTRIES = 20, 392 MAT_SUBMAT_SINGLEIS = 21, 393 MAT_STRUCTURE_ONLY = 22, 394 MAT_OPTION_MAX = 23} MatOption; 395 396 PETSC_EXTERN const char *const *MatOptions; 397 PETSC_EXTERN PetscErrorCode MatSetOption(Mat,MatOption,PetscBool); 398 PETSC_EXTERN PetscErrorCode MatGetOption(Mat,MatOption,PetscBool*); 399 PETSC_EXTERN PetscErrorCode MatGetType(Mat,MatType*); 400 401 PETSC_EXTERN PetscErrorCode MatGetValues(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],PetscScalar[]); 402 PETSC_EXTERN PetscErrorCode MatGetRow(Mat,PetscInt,PetscInt *,const PetscInt *[],const PetscScalar*[]); 403 PETSC_EXTERN PetscErrorCode MatRestoreRow(Mat,PetscInt,PetscInt *,const PetscInt *[],const PetscScalar*[]); 404 PETSC_EXTERN PetscErrorCode MatGetRowUpperTriangular(Mat); 405 PETSC_EXTERN PetscErrorCode MatRestoreRowUpperTriangular(Mat); 406 PETSC_EXTERN PetscErrorCode MatGetColumnVector(Mat,Vec,PetscInt); 407 PETSC_EXTERN PetscErrorCode MatSeqAIJGetArray(Mat,PetscScalar *[]); 408 PETSC_EXTERN PetscErrorCode MatSeqAIJRestoreArray(Mat,PetscScalar *[]); 409 PETSC_EXTERN PetscErrorCode MatSeqAIJGetMaxRowNonzeros(Mat,PetscInt*); 410 PETSC_EXTERN PetscErrorCode MatSeqAIJSetValuesLocalFast(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode); 411 PETSC_EXTERN PetscErrorCode MatSeqAIJSetType(Mat,MatType); 412 PETSC_EXTERN PetscErrorCode MatSeqAIJRegister(const char[],PetscErrorCode (*)(Mat,MatType,MatReuse,Mat *)); 413 PETSC_EXTERN PetscFunctionList MatSeqAIJList; 414 PETSC_EXTERN PetscErrorCode MatSeqSBAIJGetArray(Mat,PetscScalar *[]); 415 PETSC_EXTERN PetscErrorCode MatSeqSBAIJRestoreArray(Mat,PetscScalar *[]); 416 PETSC_EXTERN PetscErrorCode MatDenseGetArray(Mat,PetscScalar *[]); 417 PETSC_EXTERN PetscErrorCode MatDenseRestoreArray(Mat,PetscScalar *[]); 418 PETSC_EXTERN PetscErrorCode MatDensePlaceArray(Mat,const PetscScalar[]); 419 PETSC_EXTERN PetscErrorCode MatDenseResetArray(Mat); 420 PETSC_EXTERN PetscErrorCode MatDenseGetArrayRead(Mat,const PetscScalar *[]); 421 PETSC_EXTERN PetscErrorCode MatDenseRestoreArrayRead(Mat,const PetscScalar *[]); 422 PETSC_EXTERN PetscErrorCode MatGetBlockSize(Mat,PetscInt *); 423 PETSC_EXTERN PetscErrorCode MatSetBlockSize(Mat,PetscInt); 424 PETSC_EXTERN PetscErrorCode MatGetBlockSizes(Mat,PetscInt *,PetscInt *); 425 PETSC_EXTERN PetscErrorCode MatSetBlockSizes(Mat,PetscInt,PetscInt); 426 PETSC_EXTERN PetscErrorCode MatSetBlockSizesFromMats(Mat,Mat,Mat); 427 PETSC_EXTERN PetscErrorCode MatSetVariableBlockSizes(Mat,PetscInt,PetscInt*); 428 PETSC_EXTERN PetscErrorCode MatGetVariableBlockSizes(Mat,PetscInt*,const PetscInt**); 429 430 PETSC_EXTERN PetscErrorCode MatDenseGetColumn(Mat,PetscInt,PetscScalar *[]); 431 PETSC_EXTERN PetscErrorCode MatDenseRestoreColumn(Mat,PetscScalar *[]); 432 433 PETSC_EXTERN PetscErrorCode MatMult(Mat,Vec,Vec); 434 PETSC_EXTERN PetscErrorCode MatMultDiagonalBlock(Mat,Vec,Vec); 435 PETSC_EXTERN PetscErrorCode MatMultAdd(Mat,Vec,Vec,Vec); 436 PETSC_EXTERN PetscErrorCode MatMultTranspose(Mat,Vec,Vec); 437 PETSC_EXTERN PetscErrorCode MatMultHermitianTranspose(Mat,Vec,Vec); 438 PETSC_EXTERN PetscErrorCode MatIsTranspose(Mat,Mat,PetscReal,PetscBool *); 439 PETSC_EXTERN PetscErrorCode MatIsHermitianTranspose(Mat,Mat,PetscReal,PetscBool *); 440 PETSC_EXTERN PetscErrorCode MatMultTransposeAdd(Mat,Vec,Vec,Vec); 441 PETSC_EXTERN PetscErrorCode MatMultHermitianTransposeAdd(Mat,Vec,Vec,Vec); 442 PETSC_EXTERN PetscErrorCode MatMultConstrained(Mat,Vec,Vec); 443 PETSC_EXTERN PetscErrorCode MatMultTransposeConstrained(Mat,Vec,Vec); 444 PETSC_EXTERN PetscErrorCode MatMatSolve(Mat,Mat,Mat); 445 PETSC_EXTERN PetscErrorCode MatMatSolveTranspose(Mat,Mat,Mat); 446 PETSC_EXTERN PetscErrorCode MatMatTransposeSolve(Mat,Mat,Mat); 447 PETSC_EXTERN PetscErrorCode MatResidual(Mat,Vec,Vec,Vec); 448 449 /*E 450 MatDuplicateOption - Indicates if a duplicated sparse matrix should have 451 its numerical values copied over or just its nonzero structure. 452 453 Level: beginner 454 455 Any additions/changes here MUST also be made in include/petsc/finclude/petscmat.h 456 457 $ MAT_DO_NOT_COPY_VALUES - Create a matrix using the same nonzero pattern as the original matrix, 458 $ with zeros for the numerical values. 459 $ MAT_COPY_VALUES - Create a matrix with the same nonzero pattern as the original matrix 460 $ and with the same numerical values. 461 $ MAT_SHARE_NONZERO_PATTERN - Create a matrix that shares the nonzero structure with the previous matrix 462 $ and does not copy it, using zeros for the numerical values. The parent and 463 $ child matrices will share their index (i and j) arrays, and you cannot 464 $ insert new nonzero entries into either matrix. 465 466 Notes: 467 Many matrix types (including SeqAIJ) do not support the MAT_SHARE_NONZERO_PATTERN optimization; in 468 this case the behavior is as if MAT_DO_NOT_COPY_VALUES has been specified. 469 470 .seealso: MatDuplicate() 471 E*/ 472 typedef enum {MAT_DO_NOT_COPY_VALUES,MAT_COPY_VALUES,MAT_SHARE_NONZERO_PATTERN} MatDuplicateOption; 473 474 PETSC_EXTERN PetscErrorCode MatConvert(Mat,MatType,MatReuse,Mat*); 475 PETSC_EXTERN PetscErrorCode MatDuplicate(Mat,MatDuplicateOption,Mat*); 476 477 478 PETSC_EXTERN PetscErrorCode MatCopy(Mat,Mat,MatStructure); 479 PETSC_EXTERN PetscErrorCode MatView(Mat,PetscViewer); 480 PETSC_EXTERN PetscErrorCode MatIsSymmetric(Mat,PetscReal,PetscBool *); 481 PETSC_EXTERN PetscErrorCode MatIsStructurallySymmetric(Mat,PetscBool *); 482 PETSC_EXTERN PetscErrorCode MatIsHermitian(Mat,PetscReal,PetscBool *); 483 PETSC_EXTERN PetscErrorCode MatIsSymmetricKnown(Mat,PetscBool *,PetscBool *); 484 PETSC_EXTERN PetscErrorCode MatIsHermitianKnown(Mat,PetscBool *,PetscBool *); 485 PETSC_EXTERN PetscErrorCode MatMissingDiagonal(Mat,PetscBool *,PetscInt *); 486 PETSC_EXTERN PetscErrorCode MatLoad(Mat, PetscViewer); 487 488 PETSC_EXTERN PetscErrorCode MatGetRowIJ(Mat,PetscInt,PetscBool ,PetscBool ,PetscInt*,const PetscInt *[],const PetscInt *[],PetscBool *); 489 PETSC_EXTERN PetscErrorCode MatRestoreRowIJ(Mat,PetscInt,PetscBool ,PetscBool ,PetscInt *,const PetscInt *[],const PetscInt *[],PetscBool *); 490 PETSC_EXTERN PetscErrorCode MatGetColumnIJ(Mat,PetscInt,PetscBool ,PetscBool ,PetscInt*,const PetscInt *[],const PetscInt *[],PetscBool *); 491 PETSC_EXTERN PetscErrorCode MatRestoreColumnIJ(Mat,PetscInt,PetscBool ,PetscBool ,PetscInt *,const PetscInt *[],const PetscInt *[],PetscBool *); 492 493 /*S 494 MatInfo - Context of matrix information, used with MatGetInfo() 495 496 In Fortran this is simply a double precision array of dimension MAT_INFO_SIZE 497 498 Level: intermediate 499 500 Concepts: matrix^nonzero information 501 502 .seealso: MatGetInfo(), MatInfoType 503 S*/ 504 typedef struct { 505 PetscLogDouble block_size; /* block size */ 506 PetscLogDouble nz_allocated,nz_used,nz_unneeded; /* number of nonzeros */ 507 PetscLogDouble memory; /* memory allocated */ 508 PetscLogDouble assemblies; /* number of matrix assemblies called */ 509 PetscLogDouble mallocs; /* number of mallocs during MatSetValues() */ 510 PetscLogDouble fill_ratio_given,fill_ratio_needed; /* fill ratio for LU/ILU */ 511 PetscLogDouble factor_mallocs; /* number of mallocs during factorization */ 512 } MatInfo; 513 514 /*E 515 MatInfoType - Indicates if you want information about the local part of the matrix, 516 the entire parallel matrix or the maximum over all the local parts. 517 518 Level: beginner 519 520 Any additions/changes here MUST also be made in include/petsc/finclude/petscmat.h 521 522 .seealso: MatGetInfo(), MatInfo 523 E*/ 524 typedef enum {MAT_LOCAL=1,MAT_GLOBAL_MAX=2,MAT_GLOBAL_SUM=3} MatInfoType; 525 PETSC_EXTERN PetscErrorCode MatGetInfo(Mat,MatInfoType,MatInfo*); 526 PETSC_EXTERN PetscErrorCode MatGetDiagonal(Mat,Vec); 527 PETSC_EXTERN PetscErrorCode MatGetRowMax(Mat,Vec,PetscInt[]); 528 PETSC_EXTERN PetscErrorCode MatGetRowMin(Mat,Vec,PetscInt[]); 529 PETSC_EXTERN PetscErrorCode MatGetRowMaxAbs(Mat,Vec,PetscInt[]); 530 PETSC_EXTERN PetscErrorCode MatGetRowMinAbs(Mat,Vec,PetscInt[]); 531 PETSC_EXTERN PetscErrorCode MatGetRowSum(Mat,Vec); 532 PETSC_EXTERN PetscErrorCode MatTranspose(Mat,MatReuse,Mat*); 533 PETSC_EXTERN PetscErrorCode MatHermitianTranspose(Mat,MatReuse,Mat*); 534 PETSC_EXTERN PetscErrorCode MatPermute(Mat,IS,IS,Mat*); 535 PETSC_EXTERN PetscErrorCode MatDiagonalScale(Mat,Vec,Vec); 536 PETSC_EXTERN PetscErrorCode MatDiagonalSet(Mat,Vec,InsertMode); 537 538 PETSC_EXTERN PetscErrorCode MatEqual(Mat,Mat,PetscBool*); 539 PETSC_EXTERN PetscErrorCode MatMultEqual(Mat,Mat,PetscInt,PetscBool*); 540 PETSC_EXTERN PetscErrorCode MatMultAddEqual(Mat,Mat,PetscInt,PetscBool*); 541 PETSC_EXTERN PetscErrorCode MatMultTransposeEqual(Mat,Mat,PetscInt,PetscBool*); 542 PETSC_EXTERN PetscErrorCode MatMultTransposeAddEqual(Mat,Mat,PetscInt,PetscBool*); 543 PETSC_EXTERN PetscErrorCode MatMatMultEqual(Mat,Mat,Mat,PetscInt,PetscBool*); 544 PETSC_EXTERN PetscErrorCode MatTransposeMatMultEqual(Mat,Mat,Mat,PetscInt,PetscBool*); 545 PETSC_EXTERN PetscErrorCode MatMatTransposeMultEqual(Mat,Mat,Mat,PetscInt,PetscBool*); 546 PETSC_EXTERN PetscErrorCode MatIsLinear(Mat,PetscInt,PetscBool*); 547 548 PETSC_EXTERN PetscErrorCode MatNorm(Mat,NormType,PetscReal*); 549 PETSC_EXTERN PetscErrorCode MatGetColumnNorms(Mat,NormType,PetscReal*); 550 PETSC_EXTERN PetscErrorCode MatZeroEntries(Mat); 551 PETSC_EXTERN PetscErrorCode MatZeroRows(Mat,PetscInt,const PetscInt [],PetscScalar,Vec,Vec); 552 PETSC_EXTERN PetscErrorCode MatZeroRowsIS(Mat,IS,PetscScalar,Vec,Vec); 553 PETSC_EXTERN PetscErrorCode MatZeroRowsStencil(Mat,PetscInt,const MatStencil [],PetscScalar,Vec,Vec); 554 PETSC_EXTERN PetscErrorCode MatZeroRowsColumnsStencil(Mat,PetscInt,const MatStencil[],PetscScalar,Vec,Vec); 555 PETSC_EXTERN PetscErrorCode MatZeroRowsColumns(Mat,PetscInt,const PetscInt [],PetscScalar,Vec,Vec); 556 PETSC_EXTERN PetscErrorCode MatZeroRowsColumnsIS(Mat,IS,PetscScalar,Vec,Vec); 557 558 PETSC_EXTERN PetscErrorCode MatGetSize(Mat,PetscInt*,PetscInt*); 559 PETSC_EXTERN PetscErrorCode MatGetLocalSize(Mat,PetscInt*,PetscInt*); 560 PETSC_EXTERN PetscErrorCode MatGetOwnershipRange(Mat,PetscInt*,PetscInt*); 561 PETSC_EXTERN PetscErrorCode MatGetOwnershipRanges(Mat,const PetscInt**); 562 PETSC_EXTERN PetscErrorCode MatGetOwnershipRangeColumn(Mat,PetscInt*,PetscInt*); 563 PETSC_EXTERN PetscErrorCode MatGetOwnershipRangesColumn(Mat,const PetscInt**); 564 PETSC_EXTERN PetscErrorCode MatGetOwnershipIS(Mat,IS*,IS*); 565 566 PETSC_EXTERN PetscErrorCode MatCreateSubMatrices(Mat,PetscInt,const IS[],const IS[],MatReuse,Mat *[]); 567 PETSC_DEPRECATED("Use MatCreateSubMatrices()") PETSC_STATIC_INLINE PetscErrorCode MatGetSubMatrices(Mat mat,PetscInt n,const IS irow[],const IS icol[],MatReuse scall,Mat *submat[]) {return MatCreateSubMatrices(mat,n,irow,icol,scall,submat);} 568 PETSC_EXTERN PetscErrorCode MatCreateSubMatricesMPI(Mat,PetscInt,const IS[],const IS[],MatReuse,Mat *[]); 569 PETSC_DEPRECATED("Use MatCreateSubMatricesMPI()") PETSC_STATIC_INLINE PetscErrorCode MatGetSubMatricesMPI(Mat mat,PetscInt n,const IS irow[],const IS icol[],MatReuse scall,Mat *submat[]) {return MatCreateSubMatricesMPI(mat,n,irow,icol,scall,submat);} 570 PETSC_EXTERN PetscErrorCode MatDestroyMatrices(PetscInt,Mat *[]); 571 PETSC_EXTERN PetscErrorCode MatDestroySubMatrices(PetscInt,Mat *[]); 572 PETSC_EXTERN PetscErrorCode MatCreateSubMatrix(Mat,IS,IS,MatReuse,Mat *); 573 PETSC_DEPRECATED("Use MatCreateSubMatrix()") PETSC_STATIC_INLINE PetscErrorCode MatGetSubMatrix(Mat mat,IS isrow,IS iscol,MatReuse cll,Mat *newmat) {return MatCreateSubMatrix(mat,isrow,iscol,cll,newmat);} 574 PETSC_EXTERN PetscErrorCode MatGetLocalSubMatrix(Mat,IS,IS,Mat*); 575 PETSC_EXTERN PetscErrorCode MatRestoreLocalSubMatrix(Mat,IS,IS,Mat*); 576 PETSC_EXTERN PetscErrorCode MatGetSeqNonzeroStructure(Mat,Mat*); 577 PETSC_EXTERN PetscErrorCode MatDestroySeqNonzeroStructure(Mat*); 578 579 PETSC_EXTERN PetscErrorCode MatCreateMPIAIJSumSeqAIJ(MPI_Comm,Mat,PetscInt,PetscInt,MatReuse,Mat*); 580 PETSC_EXTERN PetscErrorCode MatCreateMPIAIJSumSeqAIJSymbolic(MPI_Comm,Mat,PetscInt,PetscInt,Mat*); 581 PETSC_EXTERN PetscErrorCode MatCreateMPIAIJSumSeqAIJNumeric(Mat,Mat); 582 PETSC_EXTERN PetscErrorCode MatMPIAIJGetLocalMat(Mat,MatReuse,Mat*); 583 PETSC_EXTERN PetscErrorCode MatMPIAIJGetLocalMatCondensed(Mat,MatReuse,IS*,IS*,Mat*); 584 PETSC_EXTERN PetscErrorCode MatGetBrowsOfAcols(Mat,Mat,MatReuse,IS*,IS*,Mat*); 585 PETSC_EXTERN PetscErrorCode MatGetGhosts(Mat, PetscInt *,const PetscInt *[]); 586 587 PETSC_EXTERN PetscErrorCode MatIncreaseOverlap(Mat,PetscInt,IS[],PetscInt); 588 PETSC_EXTERN PetscErrorCode MatIncreaseOverlapSplit(Mat mat,PetscInt n,IS is[],PetscInt ov); 589 PETSC_EXTERN PetscErrorCode MatMPIAIJSetUseScalableIncreaseOverlap(Mat,PetscBool); 590 591 PETSC_EXTERN PetscErrorCode MatMatMult(Mat,Mat,MatReuse,PetscReal,Mat*); 592 PETSC_EXTERN PetscErrorCode MatMatMultSymbolic(Mat,Mat,PetscReal,Mat*); 593 PETSC_EXTERN PetscErrorCode MatMatMultNumeric(Mat,Mat,Mat); 594 595 PETSC_EXTERN PetscErrorCode MatMatMatMult(Mat,Mat,Mat,MatReuse,PetscReal,Mat*); 596 PETSC_EXTERN PetscErrorCode MatGalerkin(Mat,Mat,Mat,MatReuse,PetscReal,Mat*); 597 598 PETSC_EXTERN PetscErrorCode MatPtAP(Mat,Mat,MatReuse,PetscReal,Mat*); 599 PETSC_EXTERN PetscErrorCode MatPtAPSymbolic(Mat,Mat,PetscReal,Mat*); 600 PETSC_EXTERN PetscErrorCode MatPtAPNumeric(Mat,Mat,Mat); 601 PETSC_EXTERN PetscErrorCode MatRARt(Mat,Mat,MatReuse,PetscReal,Mat*); 602 PETSC_EXTERN PetscErrorCode MatRARtSymbolic(Mat,Mat,PetscReal,Mat*); 603 PETSC_EXTERN PetscErrorCode MatRARtNumeric(Mat,Mat,Mat); 604 605 PETSC_EXTERN PetscErrorCode MatTransposeMatMult(Mat,Mat,MatReuse,PetscReal,Mat*); 606 PETSC_EXTERN PetscErrorCode MatTransposetMatMultSymbolic(Mat,Mat,PetscReal,Mat*); 607 PETSC_EXTERN PetscErrorCode MatTransposetMatMultNumeric(Mat,Mat,Mat); 608 PETSC_EXTERN PetscErrorCode MatMatTransposeMult(Mat,Mat,MatReuse,PetscReal,Mat*); 609 PETSC_EXTERN PetscErrorCode MatMatTransposeMultSymbolic(Mat,Mat,PetscReal,Mat*); 610 PETSC_EXTERN PetscErrorCode MatMatTransposeMultNumeric(Mat,Mat,Mat); 611 612 PETSC_EXTERN PetscErrorCode MatAXPY(Mat,PetscScalar,Mat,MatStructure); 613 PETSC_EXTERN PetscErrorCode MatAYPX(Mat,PetscScalar,Mat,MatStructure); 614 615 PETSC_EXTERN PetscErrorCode MatScale(Mat,PetscScalar); 616 PETSC_EXTERN PetscErrorCode MatShift(Mat,PetscScalar); 617 618 PETSC_EXTERN PetscErrorCode MatSetLocalToGlobalMapping(Mat,ISLocalToGlobalMapping,ISLocalToGlobalMapping); 619 PETSC_EXTERN PetscErrorCode MatGetLocalToGlobalMapping(Mat,ISLocalToGlobalMapping*,ISLocalToGlobalMapping*); 620 PETSC_EXTERN PetscErrorCode MatGetLayouts(Mat,PetscLayout*,PetscLayout*); 621 PETSC_EXTERN PetscErrorCode MatZeroRowsLocal(Mat,PetscInt,const PetscInt [],PetscScalar,Vec,Vec); 622 PETSC_EXTERN PetscErrorCode MatZeroRowsLocalIS(Mat,IS,PetscScalar,Vec,Vec); 623 PETSC_EXTERN PetscErrorCode MatZeroRowsColumnsLocal(Mat,PetscInt,const PetscInt [],PetscScalar,Vec,Vec); 624 PETSC_EXTERN PetscErrorCode MatZeroRowsColumnsLocalIS(Mat,IS,PetscScalar,Vec,Vec); 625 PETSC_EXTERN PetscErrorCode MatSetValuesLocal(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode); 626 PETSC_EXTERN PetscErrorCode MatSetValuesBlockedLocal(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode); 627 628 PETSC_EXTERN PetscErrorCode MatStashSetInitialSize(Mat,PetscInt,PetscInt); 629 PETSC_EXTERN PetscErrorCode MatStashGetInfo(Mat,PetscInt*,PetscInt*,PetscInt*,PetscInt*); 630 631 PETSC_EXTERN PetscErrorCode MatInterpolate(Mat,Vec,Vec); 632 PETSC_EXTERN PetscErrorCode MatInterpolateAdd(Mat,Vec,Vec,Vec); 633 PETSC_EXTERN PetscErrorCode MatRestrict(Mat,Vec,Vec); 634 PETSC_EXTERN PetscErrorCode MatCreateVecs(Mat,Vec*,Vec*); 635 PETSC_DEPRECATED("Use MatCreateVecs()") PETSC_STATIC_INLINE PetscErrorCode MatGetVecs(Mat mat,Vec *x,Vec *y) {return MatCreateVecs(mat,x,y);} 636 PETSC_EXTERN PetscErrorCode MatCreateRedundantMatrix(Mat,PetscInt,MPI_Comm,MatReuse,Mat*); 637 PETSC_EXTERN PetscErrorCode MatGetMultiProcBlock(Mat,MPI_Comm,MatReuse,Mat*); 638 PETSC_EXTERN PetscErrorCode MatFindZeroDiagonals(Mat,IS*); 639 PETSC_EXTERN PetscErrorCode MatFindOffBlockDiagonalEntries(Mat,IS*); 640 PETSC_EXTERN PetscErrorCode MatCreateMPIMatConcatenateSeqMat(MPI_Comm,Mat,PetscInt,MatReuse,Mat*); 641 642 /*MC 643 MatSetValue - Set a single entry into a matrix. 644 645 Not collective 646 647 Synopsis: 648 #include <petscmat.h> 649 PetscErrorCode MatSetValue(Mat m,PetscInt row,PetscInt col,PetscScalar value,InsertMode mode) 650 651 Input Parameters: 652 + m - the matrix 653 . row - the row location of the entry 654 . col - the column location of the entry 655 . value - the value to insert 656 - mode - either INSERT_VALUES or ADD_VALUES 657 658 Notes: 659 For efficiency one should use MatSetValues() and set several or many 660 values simultaneously if possible. 661 662 Level: beginner 663 664 .seealso: MatSetValues(), MatSetValueLocal() 665 M*/ 666 PETSC_STATIC_INLINE PetscErrorCode MatSetValue(Mat v,PetscInt i,PetscInt j,PetscScalar va,InsertMode mode) {return MatSetValues(v,1,&i,1,&j,&va,mode);} 667 668 PETSC_STATIC_INLINE PetscErrorCode MatGetValue(Mat v,PetscInt i,PetscInt j,PetscScalar *va) {return MatGetValues(v,1,&i,1,&j,va);} 669 670 PETSC_STATIC_INLINE PetscErrorCode MatSetValueLocal(Mat v,PetscInt i,PetscInt j,PetscScalar va,InsertMode mode) {return MatSetValuesLocal(v,1,&i,1,&j,&va,mode);} 671 672 /*MC 673 MatPreallocateInitialize - Begins the block of code that will count the number of nonzeros per 674 row in a matrix providing the data that one can use to correctly preallocate the matrix. 675 676 Synopsis: 677 #include <petscmat.h> 678 PetscErrorCode MatPreallocateInitialize(MPI_Comm comm, PetscInt nrows, PetscInt ncols, PetscInt *dnz, PetscInt *onz) 679 680 Collective on MPI_Comm 681 682 Input Parameters: 683 + comm - the communicator that will share the eventually allocated matrix 684 . nrows - the number of LOCAL rows in the matrix 685 - ncols - the number of LOCAL columns in the matrix 686 687 Output Parameters: 688 + dnz - the array that will be passed to the matrix preallocation routines 689 - onz - the other array passed to the matrix preallocation routines 690 691 Level: intermediate 692 693 Notes: 694 See Users-Manual: ch_performance for more details. 695 696 Do not malloc or free dnz and onz, that is handled internally by these routines 697 698 Use MatPreallocateInitializeSymmetric() for symmetric matrices (MPISBAIJ matrices) 699 700 This is a MACRO not a function because it has a leading { that is closed by PetscPreallocateFinalize(). 701 702 Concepts: preallocation^Matrix 703 704 .seealso: MatPreallocateFinalize(), MatPreallocateSet(), MatPreallocateSymmetricSetBlock(), MatPreallocateSetLocal(), 705 MatPreallocateInitializeSymmetric(), MatPreallocateSymmetricSetLocalBlock() 706 M*/ 707 #define MatPreallocateInitialize(comm,nrows,ncols,dnz,onz) 0; \ 708 { \ 709 PetscErrorCode _4_ierr; PetscInt __nrows = (nrows),__ncols = (ncols),__rstart,__start,__end; \ 710 _4_ierr = PetscCalloc2((size_t)__nrows,&dnz,(size_t)__nrows,&onz);CHKERRQ(_4_ierr); \ 711 __start = 0; __end = __start; \ 712 _4_ierr = MPI_Scan(&__ncols,&__end,1,MPIU_INT,MPI_SUM,comm);CHKERRQ(_4_ierr); __start = __end - __ncols;\ 713 _4_ierr = MPI_Scan(&__nrows,&__rstart,1,MPIU_INT,MPI_SUM,comm);CHKERRQ(_4_ierr); __rstart = __rstart - __nrows; 714 715 /*MC 716 MatPreallocateSetLocal - Indicates the locations (rows and columns) in the matrix where nonzeros will be 717 inserted using a local number of the rows and columns 718 719 Synopsis: 720 #include <petscmat.h> 721 PetscErrorCode MatPreallocateSetLocal(ISLocalToGlobalMappping map,PetscInt nrows, PetscInt *rows,PetscInt ncols, PetscInt *cols,PetscInt *dnz, PetscInt *onz) 722 723 Not Collective 724 725 Input Parameters: 726 + map - the row mapping from local numbering to global numbering 727 . nrows - the number of rows indicated 728 . rows - the indices of the rows 729 . cmap - the column mapping from local to global numbering 730 . ncols - the number of columns in the matrix 731 . cols - the columns indicated 732 . dnz - the array that will be passed to the matrix preallocation routines 733 - onz - the other array passed to the matrix preallocation routines 734 735 Level: intermediate 736 737 Notes: 738 See Users-Manual: ch_performance for more details. 739 740 Do not malloc or free dnz and onz, that is handled internally by these routines 741 742 Concepts: preallocation^Matrix 743 744 .seealso: MatPreallocateFinalize(), MatPreallocateSet(), MatPreallocateSymmetricSetBlock() 745 MatPreallocateInitialize(), MatPreallocateSymmetricSetLocalBlock(), MatPreallocateSetLocalRemoveDups() 746 M*/ 747 #define MatPreallocateSetLocal(rmap,nrows,rows,cmap,ncols,cols,dnz,onz) 0; \ 748 {\ 749 PetscInt __l;\ 750 _4_ierr = ISLocalToGlobalMappingApply(rmap,nrows,rows,rows);CHKERRQ(_4_ierr);\ 751 _4_ierr = ISLocalToGlobalMappingApply(cmap,ncols,cols,cols);CHKERRQ(_4_ierr);\ 752 for (__l=0;__l<nrows;__l++) {\ 753 _4_ierr = MatPreallocateSet((rows)[__l],ncols,cols,dnz,onz);CHKERRQ(_4_ierr);\ 754 }\ 755 } 756 757 /*MC 758 MatPreallocateSetLocalRemoveDups - Indicates the locations (rows and columns) in the matrix where nonzeros will be 759 inserted using a local number of the rows and columns. This version removes any duplicate columns in cols 760 761 Synopsis: 762 #include <petscmat.h> 763 PetscErrorCode MatPreallocateSetLocalRemoveDups(ISLocalToGlobalMappping map,PetscInt nrows, PetscInt *rows,PetscInt ncols, PetscInt *cols,PetscInt *dnz, PetscInt *onz) 764 765 Not Collective 766 767 Input Parameters: 768 + map - the row mapping from local numbering to global numbering 769 . nrows - the number of rows indicated 770 . rows - the indices of the rows (these values are mapped to the global values) 771 . cmap - the column mapping from local to global numbering 772 . ncols - the number of columns in the matrix (this value will be changed if duplicate columns are found) 773 . cols - the columns indicated (these values are mapped to the global values, they are then sorted and duplicates removed) 774 . dnz - the array that will be passed to the matrix preallocation routines 775 - onz - the other array passed to the matrix preallocation routines 776 777 Level: intermediate 778 779 Notes: 780 See Users-Manual: ch_performance for more details. 781 782 Do not malloc or free dnz and onz, that is handled internally by these routines 783 784 Concepts: preallocation^Matrix 785 786 .seealso: MatPreallocateFinalize(), MatPreallocateSet(), MatPreallocateSymmetricSetBlock() 787 MatPreallocateInitialize(), MatPreallocateSymmetricSetLocalBlock(), MatPreallocateSetLocal() 788 M*/ 789 #define MatPreallocateSetLocalRemoveDups(rmap,nrows,rows,cmap,ncols,cols,dnz,onz) 0; \ 790 {\ 791 PetscInt __l;\ 792 _4_ierr = ISLocalToGlobalMappingApply(rmap,nrows,rows,rows);CHKERRQ(_4_ierr);\ 793 _4_ierr = ISLocalToGlobalMappingApply(cmap,ncols,cols,cols);CHKERRQ(_4_ierr);\ 794 _4_ierr = PetscSortRemoveDupsInt(&ncols,cols);CHKERRQ(_4_ierr);\ 795 for (__l=0;__l<nrows;__l++) {\ 796 _4_ierr = MatPreallocateSet((rows)[__l],ncols,cols,dnz,onz);CHKERRQ(_4_ierr);\ 797 }\ 798 } 799 800 /*MC 801 MatPreallocateSetLocalBlock - Indicates the locations (rows and columns) in the matrix where nonzeros will be 802 inserted using a local number of the rows and columns 803 804 Synopsis: 805 #include <petscmat.h> 806 PetscErrorCode MatPreallocateSetLocalBlock(ISLocalToGlobalMappping map,PetscInt nrows, PetscInt *rows,PetscInt ncols, PetscInt *cols,PetscInt *dnz, PetscInt *onz) 807 808 Not Collective 809 810 Input Parameters: 811 + map - the row mapping from local numbering to global numbering 812 . nrows - the number of rows indicated 813 . rows - the indices of the rows 814 . cmap - the column mapping from local to global numbering 815 . ncols - the number of columns in the matrix 816 . cols - the columns indicated 817 . dnz - the array that will be passed to the matrix preallocation routines 818 - onz - the other array passed to the matrix preallocation routines 819 820 Level: intermediate 821 822 Notes: 823 See Users-Manual: ch_performance for more details. 824 825 Do not malloc or free dnz and onz, that is handled internally by these routines 826 827 Concepts: preallocation^Matrix 828 829 .seealso: MatPreallocateFinalize(), MatPreallocateSet(), MatPreallocateSymmetricSetBlock() 830 MatPreallocateInitialize(), MatPreallocateSymmetricSetLocalBlock() 831 M*/ 832 #define MatPreallocateSetLocalBlock(rmap,nrows,rows,cmap,ncols,cols,dnz,onz) 0; \ 833 {\ 834 PetscInt __l;\ 835 _4_ierr = ISLocalToGlobalMappingApplyBlock(rmap,nrows,rows,rows);CHKERRQ(_4_ierr);\ 836 _4_ierr = ISLocalToGlobalMappingApplyBlock(cmap,ncols,cols,cols);CHKERRQ(_4_ierr);\ 837 for (__l=0;__l<nrows;__l++) {\ 838 _4_ierr = MatPreallocateSet((rows)[__l],ncols,cols,dnz,onz);CHKERRQ(_4_ierr);\ 839 }\ 840 } 841 842 /*MC 843 MatPreallocateSymmetricSetLocalBlock - Indicates the locations (rows and columns) in the matrix where nonzeros will be 844 inserted using a local number of the rows and columns 845 846 Synopsis: 847 #include <petscmat.h> 848 PetscErrorCode MatPreallocateSymmetricSetLocalBlock(ISLocalToGlobalMappping map,PetscInt nrows, PetscInt *rows,PetscInt ncols, PetscInt *cols,PetscInt *dnz, PetscInt *onz) 849 850 Not Collective 851 852 Input Parameters: 853 + map - the mapping between local numbering and global numbering 854 . nrows - the number of rows indicated 855 . rows - the indices of the rows 856 . ncols - the number of columns in the matrix 857 . cols - the columns indicated 858 . dnz - the array that will be passed to the matrix preallocation routines 859 - onz - the other array passed to the matrix preallocation routines 860 861 Level: intermediate 862 863 Notes: 864 See Users-Manual: ch_performance for more details. 865 866 Do not malloc or free dnz and onz that is handled internally by these routines 867 868 Concepts: preallocation^Matrix 869 870 .seealso: MatPreallocateFinalize(), MatPreallocateSet() 871 MatPreallocateInitialize(), MatPreallocateSetLocal() 872 M*/ 873 #define MatPreallocateSymmetricSetLocalBlock(map,nrows,rows,ncols,cols,dnz,onz) 0;\ 874 {\ 875 PetscInt __l;\ 876 _4_ierr = ISLocalToGlobalMappingApplyBlock(map,nrows,rows,rows);CHKERRQ(_4_ierr);\ 877 _4_ierr = ISLocalToGlobalMappingApplyBlock(map,ncols,cols,cols);CHKERRQ(_4_ierr);\ 878 for (__l=0;__l<nrows;__l++) {\ 879 _4_ierr = MatPreallocateSymmetricSetBlock((rows)[__l],ncols,cols,dnz,onz);CHKERRQ(_4_ierr);\ 880 }\ 881 } 882 /*MC 883 MatPreallocateSet - Indicates the locations (rows and columns) in the matrix where nonzeros will be 884 inserted using a local number of the rows and columns 885 886 Synopsis: 887 #include <petscmat.h> 888 PetscErrorCode MatPreallocateSet(PetscInt nrows, PetscInt *rows,PetscInt ncols, PetscInt *cols,PetscInt *dnz, PetscInt *onz) 889 890 Not Collective 891 892 Input Parameters: 893 + row - the row 894 . ncols - the number of columns in the matrix 895 - cols - the columns indicated 896 897 Output Parameters: 898 + dnz - the array that will be passed to the matrix preallocation routines 899 - onz - the other array passed to the matrix preallocation routines 900 901 Level: intermediate 902 903 Notes: 904 See Users-Manual: ch_performance for more details. 905 906 Do not malloc or free dnz and onz that is handled internally by these routines 907 908 This is a MACRO not a function because it uses variables declared in MatPreallocateInitialize(). 909 910 Concepts: preallocation^Matrix 911 912 .seealso: MatPreallocateFinalize(), MatPreallocateSet(), MatPreallocateSymmetricSetBlock() 913 MatPreallocateInitialize(), MatPreallocateSetLocal() 914 M*/ 915 #define MatPreallocateSet(row,nc,cols,dnz,onz) 0;\ 916 { PetscInt __i; \ 917 if (row < __rstart) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Trying to set preallocation for row %D less than first local row %D",row,__rstart);\ 918 if (row >= __rstart+__nrows) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Trying to set preallocation for row %D greater than last local row %D",row,__rstart+__nrows-1);\ 919 for (__i=0; __i<nc; __i++) {\ 920 if ((cols)[__i] < __start || (cols)[__i] >= __end) onz[row - __rstart]++; \ 921 else if (dnz[row - __rstart] < __ncols) dnz[row - __rstart]++;\ 922 }\ 923 } 924 925 /*MC 926 MatPreallocateSymmetricSetBlock - Indicates the locations (rows and columns) in the matrix where nonzeros will be 927 inserted using a local number of the rows and columns 928 929 Synopsis: 930 #include <petscmat.h> 931 PetscErrorCode MatPreallocateSymmetricSetBlock(PetscInt nrows, PetscInt *rows,PetscInt ncols, PetscInt *cols,PetscInt *dnz, PetscInt *onz) 932 933 Not Collective 934 935 Input Parameters: 936 + nrows - the number of rows indicated 937 . rows - the indices of the rows 938 . ncols - the number of columns in the matrix 939 . cols - the columns indicated 940 . dnz - the array that will be passed to the matrix preallocation routines 941 - onz - the other array passed to the matrix preallocation routines 942 943 Level: intermediate 944 945 Notes: 946 See Users-Manual: ch_performance for more details. 947 948 Do not malloc or free dnz and onz that is handled internally by these routines 949 950 This is a MACRO not a function because it uses variables declared in MatPreallocateInitialize(). 951 952 Concepts: preallocation^Matrix 953 954 .seealso: MatPreallocateFinalize(), MatPreallocateSet(), MatPreallocateInitialize(), 955 MatPreallocateSymmetricSetLocalBlock(), MatPreallocateSetLocal() 956 M*/ 957 #define MatPreallocateSymmetricSetBlock(row,nc,cols,dnz,onz) 0;\ 958 { PetscInt __i; \ 959 for (__i=0; __i<nc; __i++) {\ 960 if (cols[__i] >= __end) onz[row - __rstart]++; \ 961 else if (cols[__i] >= row && dnz[row - __rstart] < __ncols) dnz[row - __rstart]++;\ 962 }\ 963 } 964 965 /*MC 966 MatPreallocateLocation - An alternative to MatPreallocateSet() that puts the nonzero locations into the matrix if it exists 967 968 Synopsis: 969 #include <petscmat.h> 970 PetscErrorCode MatPreallocateLocations(Mat A,PetscInt row,PetscInt ncols,PetscInt *cols,PetscInt *dnz,PetscInt *onz) 971 972 Not Collective 973 974 Input Parameters: 975 . A - matrix 976 . row - row where values exist (must be local to this process) 977 . ncols - number of columns 978 . cols - columns with nonzeros 979 . dnz - the array that will be passed to the matrix preallocation routines 980 - onz - the other array passed to the matrix preallocation routines 981 982 Level: intermediate 983 984 Notes: 985 See Users-Manual: ch_performance for more details. 986 987 Do not malloc or free dnz and onz that is handled internally by these routines 988 989 This is a MACRO not a function because it uses a bunch of variables private to the MatPreallocation.... routines. 990 991 Concepts: preallocation^Matrix 992 993 .seealso: MatPreallocateInitialize(), MatPreallocateSet(), MatPreallocateSymmetricSetBlock(), MatPreallocateSetLocal(), 994 MatPreallocateSymmetricSetLocalBlock() 995 M*/ 996 #define MatPreallocateLocation(A,row,ncols,cols,dnz,onz) 0;if (A) {ierr = MatSetValues(A,1,&row,ncols,cols,NULL,INSERT_VALUES);CHKERRQ(ierr);} else {ierr = MatPreallocateSet(row,ncols,cols,dnz,onz);CHKERRQ(ierr);} 997 998 999 /*MC 1000 MatPreallocateFinalize - Ends the block of code that will count the number of nonzeros per 1001 row in a matrix providing the data that one can use to correctly preallocate the matrix. 1002 1003 Synopsis: 1004 #include <petscmat.h> 1005 PetscErrorCode MatPreallocateFinalize(PetscInt *dnz, PetscInt *onz) 1006 1007 Collective on MPI_Comm 1008 1009 Input Parameters: 1010 + dnz - the array that was be passed to the matrix preallocation routines 1011 - onz - the other array passed to the matrix preallocation routines 1012 1013 Level: intermediate 1014 1015 Notes: 1016 See Users-Manual: ch_performance for more details. 1017 1018 Do not malloc or free dnz and onz that is handled internally by these routines 1019 1020 This is a MACRO not a function because it closes the { started in MatPreallocateInitialize(). 1021 1022 Concepts: preallocation^Matrix 1023 1024 .seealso: MatPreallocateInitialize(), MatPreallocateSet(), MatPreallocateSymmetricSetBlock(), MatPreallocateSetLocal(), 1025 MatPreallocateSymmetricSetLocalBlock() 1026 M*/ 1027 #define MatPreallocateFinalize(dnz,onz) 0;_4_ierr = PetscFree2(dnz,onz);CHKERRQ(_4_ierr);} 1028 1029 /* Routines unique to particular data structures */ 1030 PETSC_EXTERN PetscErrorCode MatShellGetContext(Mat,void *); 1031 1032 PETSC_EXTERN PetscErrorCode MatInodeAdjustForInodes(Mat,IS*,IS*); 1033 PETSC_EXTERN PetscErrorCode MatInodeGetInodeSizes(Mat,PetscInt *,PetscInt *[],PetscInt *); 1034 1035 PETSC_EXTERN PetscErrorCode MatSeqAIJSetColumnIndices(Mat,PetscInt[]); 1036 PETSC_EXTERN PetscErrorCode MatSeqBAIJSetColumnIndices(Mat,PetscInt[]); 1037 PETSC_EXTERN PetscErrorCode MatCreateSeqAIJWithArrays(MPI_Comm,PetscInt,PetscInt,PetscInt[],PetscInt[],PetscScalar[],Mat*); 1038 PETSC_EXTERN PetscErrorCode MatCreateSeqBAIJWithArrays(MPI_Comm,PetscInt,PetscInt,PetscInt,PetscInt[],PetscInt[],PetscScalar[],Mat*); 1039 PETSC_EXTERN PetscErrorCode MatCreateSeqSBAIJWithArrays(MPI_Comm,PetscInt,PetscInt,PetscInt,PetscInt[],PetscInt[],PetscScalar[],Mat*); 1040 PETSC_EXTERN PetscErrorCode MatCreateSeqAIJFromTriple(MPI_Comm,PetscInt,PetscInt,PetscInt[],PetscInt[],PetscScalar[],Mat*,PetscInt,PetscBool); 1041 1042 #define MAT_SKIP_ALLOCATION -4 1043 1044 PETSC_EXTERN PetscErrorCode MatSeqBAIJSetPreallocation(Mat,PetscInt,PetscInt,const PetscInt[]); 1045 PETSC_EXTERN PetscErrorCode MatSeqSBAIJSetPreallocation(Mat,PetscInt,PetscInt,const PetscInt[]); 1046 PETSC_EXTERN PetscErrorCode MatSeqAIJSetPreallocation(Mat,PetscInt,const PetscInt[]); 1047 1048 PETSC_EXTERN PetscErrorCode MatMPIBAIJSetPreallocation(Mat,PetscInt,PetscInt,const PetscInt[],PetscInt,const PetscInt[]); 1049 PETSC_EXTERN PetscErrorCode MatMPISBAIJSetPreallocation(Mat,PetscInt,PetscInt,const PetscInt[],PetscInt,const PetscInt[]); 1050 PETSC_EXTERN PetscErrorCode MatMPIAIJSetPreallocation(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[]); 1051 PETSC_EXTERN PetscErrorCode MatSeqAIJSetPreallocationCSR(Mat,const PetscInt [],const PetscInt [],const PetscScalar []); 1052 PETSC_EXTERN PetscErrorCode MatSeqBAIJSetPreallocationCSR(Mat,PetscInt,const PetscInt[],const PetscInt[],const PetscScalar[]); 1053 PETSC_EXTERN PetscErrorCode MatMPIAIJSetPreallocationCSR(Mat,const PetscInt[],const PetscInt[],const PetscScalar[]); 1054 PETSC_EXTERN PetscErrorCode MatMPIBAIJSetPreallocationCSR(Mat,PetscInt,const PetscInt[],const PetscInt[],const PetscScalar[]); 1055 PETSC_EXTERN PetscErrorCode MatMPIAdjSetPreallocation(Mat,PetscInt[],PetscInt[],PetscInt[]); 1056 PETSC_EXTERN PetscErrorCode MatMPIAdjToSeq(Mat,Mat*); 1057 PETSC_EXTERN PetscErrorCode MatMPIDenseSetPreallocation(Mat,PetscScalar[]); 1058 PETSC_EXTERN PetscErrorCode MatSeqDenseSetPreallocation(Mat,PetscScalar[]); 1059 PETSC_EXTERN PetscErrorCode MatMPIAIJGetSeqAIJ(Mat,Mat*,Mat*,const PetscInt*[]); 1060 PETSC_EXTERN PetscErrorCode MatMPIBAIJGetSeqBAIJ(Mat,Mat*,Mat*,const PetscInt*[]); 1061 PETSC_EXTERN PetscErrorCode MatMPIAdjCreateNonemptySubcommMat(Mat,Mat*); 1062 1063 PETSC_EXTERN PetscErrorCode MatSeqDenseSetLDA(Mat,PetscInt); 1064 PETSC_EXTERN PetscErrorCode MatDenseGetLocalMatrix(Mat,Mat*); 1065 1066 PETSC_EXTERN PetscErrorCode MatStoreValues(Mat); 1067 PETSC_EXTERN PetscErrorCode MatRetrieveValues(Mat); 1068 1069 PETSC_EXTERN PetscErrorCode MatDAADSetCtx(Mat,void*); 1070 1071 PETSC_EXTERN PetscErrorCode MatFindNonzeroRows(Mat,IS*); 1072 PETSC_EXTERN PetscErrorCode MatFindZeroRows(Mat,IS*); 1073 /* 1074 These routines are not usually accessed directly, rather solving is 1075 done through the KSP and PC interfaces. 1076 */ 1077 1078 /*J 1079 MatOrderingType - String with the name of a PETSc matrix ordering 1080 1081 Level: beginner 1082 1083 .seealso: MatGetOrdering() 1084 J*/ 1085 typedef const char* MatOrderingType; 1086 #define MATORDERINGNATURAL "natural" 1087 #define MATORDERINGND "nd" 1088 #define MATORDERING1WD "1wd" 1089 #define MATORDERINGRCM "rcm" 1090 #define MATORDERINGQMD "qmd" 1091 #define MATORDERINGROWLENGTH "rowlength" 1092 #define MATORDERINGWBM "wbm" 1093 #define MATORDERINGSPECTRAL "spectral" 1094 #define MATORDERINGAMD "amd" /* only works if UMFPACK is installed with PETSc */ 1095 1096 PETSC_EXTERN PetscErrorCode MatGetOrdering(Mat,MatOrderingType,IS*,IS*); 1097 PETSC_EXTERN PetscErrorCode MatGetOrderingList(PetscFunctionList*); 1098 PETSC_EXTERN PetscErrorCode MatOrderingRegister(const char[],PetscErrorCode(*)(Mat,MatOrderingType,IS*,IS*)); 1099 PETSC_EXTERN PetscFunctionList MatOrderingList; 1100 1101 PETSC_EXTERN PetscErrorCode MatReorderForNonzeroDiagonal(Mat,PetscReal,IS,IS); 1102 PETSC_EXTERN PetscErrorCode MatCreateLaplacian(Mat,PetscReal,PetscBool,Mat*); 1103 1104 /*S 1105 MatFactorShiftType - Numeric Shift. 1106 1107 Level: beginner 1108 1109 S*/ 1110 typedef enum {MAT_SHIFT_NONE,MAT_SHIFT_NONZERO,MAT_SHIFT_POSITIVE_DEFINITE,MAT_SHIFT_INBLOCKS} MatFactorShiftType; 1111 PETSC_EXTERN const char *const MatFactorShiftTypes[]; 1112 PETSC_EXTERN const char *const MatFactorShiftTypesDetail[]; 1113 1114 /*S 1115 MatFactorError - indicates what type of error in matrix factor 1116 1117 Level: beginner 1118 1119 Developer Notes: 1120 Any additions/changes here MUST also be made in include/petsc/finclude/petscmat.h 1121 1122 .seealso: MatGetFactor() 1123 S*/ 1124 typedef enum {MAT_FACTOR_NOERROR,MAT_FACTOR_STRUCT_ZEROPIVOT,MAT_FACTOR_NUMERIC_ZEROPIVOT,MAT_FACTOR_OUTMEMORY,MAT_FACTOR_OTHER} MatFactorError; 1125 1126 PETSC_EXTERN PetscErrorCode MatFactorGetError(Mat,MatFactorError*); 1127 PETSC_EXTERN PetscErrorCode MatFactorClearError(Mat); 1128 PETSC_EXTERN PetscErrorCode MatFactorGetErrorZeroPivot(Mat,PetscReal*,PetscInt*); 1129 1130 /*S 1131 MatFactorInfo - Data passed into the matrix factorization routines, and information about the resulting factorization 1132 1133 In Fortran these are simply double precision arrays of size MAT_FACTORINFO_SIZE, that is use 1134 $ MatFactorInfo info(MAT_FACTORINFO_SIZE) 1135 1136 Notes: 1137 These are not usually directly used by users, instead use PC type of LU, ILU, CHOLESKY or ICC. 1138 1139 You can use MatFactorInfoInitialize() to set default values. 1140 1141 Level: developer 1142 1143 .seealso: MatLUFactorSymbolic(), MatILUFactorSymbolic(), MatCholeskyFactorSymbolic(), MatICCFactorSymbolic(), MatICCFactor(), 1144 MatFactorInfoInitialize() 1145 1146 S*/ 1147 typedef struct { 1148 PetscReal diagonal_fill; /* force diagonal to fill in if initially not filled */ 1149 PetscReal usedt; 1150 PetscReal dt; /* drop tolerance */ 1151 PetscReal dtcol; /* tolerance for pivoting */ 1152 PetscReal dtcount; /* maximum nonzeros to be allowed per row */ 1153 PetscReal fill; /* expected fill, nonzeros in factored matrix/nonzeros in original matrix */ 1154 PetscReal levels; /* ICC/ILU(levels) */ 1155 PetscReal pivotinblocks; /* for BAIJ and SBAIJ matrices pivot in factorization on blocks, default 1.0 1156 factorization may be faster if do not pivot */ 1157 PetscReal zeropivot; /* pivot is called zero if less than this */ 1158 PetscReal shifttype; /* type of shift added to matrix factor to prevent zero pivots */ 1159 PetscReal shiftamount; /* how large the shift is */ 1160 } MatFactorInfo; 1161 1162 PETSC_EXTERN PetscErrorCode MatFactorInfoInitialize(MatFactorInfo*); 1163 PETSC_EXTERN PetscErrorCode MatCholeskyFactor(Mat,IS,const MatFactorInfo*); 1164 PETSC_EXTERN PetscErrorCode MatCholeskyFactorSymbolic(Mat,Mat,IS,const MatFactorInfo*); 1165 PETSC_EXTERN PetscErrorCode MatCholeskyFactorNumeric(Mat,Mat,const MatFactorInfo*); 1166 PETSC_EXTERN PetscErrorCode MatLUFactor(Mat,IS,IS,const MatFactorInfo*); 1167 PETSC_EXTERN PetscErrorCode MatILUFactor(Mat,IS,IS,const MatFactorInfo*); 1168 PETSC_EXTERN PetscErrorCode MatLUFactorSymbolic(Mat,Mat,IS,IS,const MatFactorInfo*); 1169 PETSC_EXTERN PetscErrorCode MatILUFactorSymbolic(Mat,Mat,IS,IS,const MatFactorInfo*); 1170 PETSC_EXTERN PetscErrorCode MatICCFactorSymbolic(Mat,Mat,IS,const MatFactorInfo*); 1171 PETSC_EXTERN PetscErrorCode MatICCFactor(Mat,IS,const MatFactorInfo*); 1172 PETSC_EXTERN PetscErrorCode MatLUFactorNumeric(Mat,Mat,const MatFactorInfo*); 1173 PETSC_EXTERN PetscErrorCode MatGetInertia(Mat,PetscInt*,PetscInt*,PetscInt*); 1174 PETSC_EXTERN PetscErrorCode MatSolve(Mat,Vec,Vec); 1175 PETSC_EXTERN PetscErrorCode MatForwardSolve(Mat,Vec,Vec); 1176 PETSC_EXTERN PetscErrorCode MatBackwardSolve(Mat,Vec,Vec); 1177 PETSC_EXTERN PetscErrorCode MatSolveAdd(Mat,Vec,Vec,Vec); 1178 PETSC_EXTERN PetscErrorCode MatSolveTranspose(Mat,Vec,Vec); 1179 PETSC_EXTERN PetscErrorCode MatSolveTransposeAdd(Mat,Vec,Vec,Vec); 1180 PETSC_EXTERN PetscErrorCode MatSolves(Mat,Vecs,Vecs); 1181 PETSC_EXTERN PetscErrorCode MatSetUnfactored(Mat); 1182 1183 typedef enum {MAT_FACTOR_SCHUR_UNFACTORED, MAT_FACTOR_SCHUR_FACTORED, MAT_FACTOR_SCHUR_INVERTED} MatFactorSchurStatus; 1184 PETSC_EXTERN PetscErrorCode MatFactorSetSchurIS(Mat,IS); 1185 PETSC_EXTERN PetscErrorCode MatFactorGetSchurComplement(Mat,Mat*,MatFactorSchurStatus*); 1186 PETSC_EXTERN PetscErrorCode MatFactorRestoreSchurComplement(Mat,Mat*,MatFactorSchurStatus); 1187 PETSC_EXTERN PetscErrorCode MatFactorInvertSchurComplement(Mat); 1188 PETSC_EXTERN PetscErrorCode MatFactorCreateSchurComplement(Mat,Mat*,MatFactorSchurStatus*); 1189 PETSC_EXTERN PetscErrorCode MatFactorSolveSchurComplement(Mat,Vec,Vec); 1190 PETSC_EXTERN PetscErrorCode MatFactorSolveSchurComplementTranspose(Mat,Vec,Vec); 1191 PETSC_EXTERN PetscErrorCode MatFactorFactorizeSchurComplement(Mat); 1192 1193 /*E 1194 MatSORType - What type of (S)SOR to perform 1195 1196 Level: beginner 1197 1198 May be bitwise ORd together 1199 1200 Any additions/changes here MUST also be made in include/petsc/finclude/petscmat.h 1201 1202 MatSORType may be bitwise ORd together, so do not change the numbers 1203 1204 .seealso: MatSOR() 1205 E*/ 1206 typedef enum {SOR_FORWARD_SWEEP=1,SOR_BACKWARD_SWEEP=2,SOR_SYMMETRIC_SWEEP=3, 1207 SOR_LOCAL_FORWARD_SWEEP=4,SOR_LOCAL_BACKWARD_SWEEP=8, 1208 SOR_LOCAL_SYMMETRIC_SWEEP=12,SOR_ZERO_INITIAL_GUESS=16, 1209 SOR_EISENSTAT=32,SOR_APPLY_UPPER=64,SOR_APPLY_LOWER=128} MatSORType; 1210 PETSC_EXTERN PetscErrorCode MatSOR(Mat,Vec,PetscReal,MatSORType,PetscReal,PetscInt,PetscInt,Vec); 1211 1212 /* 1213 These routines are for efficiently computing Jacobians via finite differences. 1214 */ 1215 1216 /*S 1217 MatColoring - Object for managing the coloring of matrices. 1218 1219 Level: beginner 1220 1221 Concepts: matrix, coloring 1222 1223 .seealso: MatFDColoringCreate() ISColoring MatFDColoring 1224 S*/ 1225 typedef struct _p_MatColoring* MatColoring; 1226 /*J 1227 MatColoringType - String with the name of a PETSc matrix coloring 1228 1229 Level: beginner 1230 1231 .seealso: MatColoringSetType(), MatColoring 1232 J*/ 1233 1234 typedef const char* MatColoringType; 1235 #define MATCOLORINGJP "jp" 1236 #define MATCOLORINGPOWER "power" 1237 #define MATCOLORINGNATURAL "natural" 1238 #define MATCOLORINGSL "sl" 1239 #define MATCOLORINGLF "lf" 1240 #define MATCOLORINGID "id" 1241 #define MATCOLORINGGREEDY "greedy" 1242 1243 /*E 1244 MatColoringWeightType - Type of weight scheme 1245 1246 Not Collective 1247 1248 + MAT_COLORING_RANDOM - Random weights 1249 . MAT_COLORING_LEXICAL - Lexical weighting based upon global numbering. 1250 - MAT_COLORING_LF - Last-first weighting. 1251 1252 Level: intermediate 1253 1254 Any additions/changes here MUST also be made in include/petsc/finclude/petscmat.h 1255 E*/ 1256 typedef enum {MAT_COLORING_WEIGHT_RANDOM,MAT_COLORING_WEIGHT_LEXICAL,MAT_COLORING_WEIGHT_LF,MAT_COLORING_WEIGHT_SL} MatColoringWeightType; 1257 1258 PETSC_EXTERN PetscErrorCode MatColoringCreate(Mat,MatColoring*); 1259 PETSC_EXTERN PetscErrorCode MatColoringGetDegrees(Mat,PetscInt,PetscInt*); 1260 PETSC_EXTERN PetscErrorCode MatColoringDestroy(MatColoring*); 1261 PETSC_EXTERN PetscErrorCode MatColoringView(MatColoring,PetscViewer); 1262 PETSC_EXTERN PetscErrorCode MatColoringSetType(MatColoring,MatColoringType); 1263 PETSC_EXTERN PetscErrorCode MatColoringSetFromOptions(MatColoring); 1264 PETSC_EXTERN PetscErrorCode MatColoringSetDistance(MatColoring,PetscInt); 1265 PETSC_EXTERN PetscErrorCode MatColoringGetDistance(MatColoring,PetscInt*); 1266 PETSC_EXTERN PetscErrorCode MatColoringSetMaxColors(MatColoring,PetscInt); 1267 PETSC_EXTERN PetscErrorCode MatColoringGetMaxColors(MatColoring,PetscInt*); 1268 PETSC_EXTERN PetscErrorCode MatColoringApply(MatColoring,ISColoring*); 1269 PETSC_EXTERN PetscErrorCode MatColoringRegister(const char[],PetscErrorCode(*)(MatColoring)); 1270 PETSC_EXTERN PetscErrorCode MatColoringPatch(Mat,PetscInt,PetscInt,ISColoringValue[],ISColoring*); 1271 PETSC_EXTERN PetscErrorCode MatColoringSetWeightType(MatColoring,MatColoringWeightType); 1272 PETSC_EXTERN PetscErrorCode MatColoringSetWeights(MatColoring,PetscReal*,PetscInt*); 1273 PETSC_EXTERN PetscErrorCode MatColoringCreateWeights(MatColoring,PetscReal **,PetscInt **lperm); 1274 PETSC_EXTERN PetscErrorCode MatColoringTest(MatColoring,ISColoring); 1275 PETSC_DEPRECATED("Use MatColoringTest()") PETSC_STATIC_INLINE PetscErrorCode MatColoringTestValid(MatColoring matcoloring,ISColoring iscoloring) {return MatColoringTest(matcoloring,iscoloring);} 1276 PETSC_EXTERN PetscErrorCode MatISColoringTest(Mat,ISColoring); 1277 1278 /*S 1279 MatFDColoring - Object for computing a sparse Jacobian via finite differences 1280 and coloring 1281 1282 Level: beginner 1283 1284 Concepts: coloring, sparse Jacobian, finite differences 1285 1286 .seealso: MatFDColoringCreate() 1287 S*/ 1288 typedef struct _p_MatFDColoring* MatFDColoring; 1289 1290 PETSC_EXTERN PetscErrorCode MatFDColoringCreate(Mat,ISColoring,MatFDColoring *); 1291 PETSC_EXTERN PetscErrorCode MatFDColoringDestroy(MatFDColoring*); 1292 PETSC_EXTERN PetscErrorCode MatFDColoringView(MatFDColoring,PetscViewer); 1293 PETSC_EXTERN PetscErrorCode MatFDColoringSetFunction(MatFDColoring,PetscErrorCode (*)(void),void*); 1294 PETSC_EXTERN PetscErrorCode MatFDColoringGetFunction(MatFDColoring,PetscErrorCode (**)(void),void**); 1295 PETSC_EXTERN PetscErrorCode MatFDColoringSetParameters(MatFDColoring,PetscReal,PetscReal); 1296 PETSC_EXTERN PetscErrorCode MatFDColoringSetFromOptions(MatFDColoring); 1297 PETSC_EXTERN PetscErrorCode MatFDColoringApply(Mat,MatFDColoring,Vec,void *); 1298 PETSC_EXTERN PetscErrorCode MatFDColoringSetF(MatFDColoring,Vec); 1299 PETSC_EXTERN PetscErrorCode MatFDColoringGetPerturbedColumns(MatFDColoring,PetscInt*,const PetscInt*[]); 1300 PETSC_EXTERN PetscErrorCode MatFDColoringSetUp(Mat,ISColoring,MatFDColoring); 1301 PETSC_EXTERN PetscErrorCode MatFDColoringSetBlockSize(MatFDColoring,PetscInt,PetscInt); 1302 1303 1304 /*S 1305 MatTransposeColoring - Object for computing a sparse matrix product C=A*B^T via coloring 1306 1307 Level: beginner 1308 1309 Concepts: coloring, sparse matrix product 1310 1311 .seealso: MatTransposeColoringCreate() 1312 S*/ 1313 typedef struct _p_MatTransposeColoring* MatTransposeColoring; 1314 1315 PETSC_EXTERN PetscErrorCode MatTransposeColoringCreate(Mat,ISColoring,MatTransposeColoring *); 1316 PETSC_EXTERN PetscErrorCode MatTransColoringApplySpToDen(MatTransposeColoring,Mat,Mat); 1317 PETSC_EXTERN PetscErrorCode MatTransColoringApplyDenToSp(MatTransposeColoring,Mat,Mat); 1318 PETSC_EXTERN PetscErrorCode MatTransposeColoringDestroy(MatTransposeColoring*); 1319 1320 /* 1321 These routines are for partitioning matrices: currently used only 1322 for adjacency matrix, MatCreateMPIAdj(). 1323 */ 1324 1325 /*S 1326 MatPartitioning - Object for managing the partitioning of a matrix or graph 1327 1328 Level: beginner 1329 1330 Concepts: partitioning 1331 1332 .seealso: MatPartitioningCreate(), MatPartitioningType 1333 S*/ 1334 typedef struct _p_MatPartitioning* MatPartitioning; 1335 1336 /*J 1337 MatPartitioningType - String with the name of a PETSc matrix partitioning 1338 1339 Level: beginner 1340 dm 1341 .seealso: MatPartitioningCreate(), MatPartitioning 1342 J*/ 1343 typedef const char* MatPartitioningType; 1344 #define MATPARTITIONINGCURRENT "current" 1345 #define MATPARTITIONINGAVERAGE "average" 1346 #define MATPARTITIONINGSQUARE "square" 1347 #define MATPARTITIONINGPARMETIS "parmetis" 1348 #define MATPARTITIONINGCHACO "chaco" 1349 #define MATPARTITIONINGPARTY "party" 1350 #define MATPARTITIONINGPTSCOTCH "ptscotch" 1351 #define MATPARTITIONINGHIERARCH "hierarch" 1352 1353 1354 PETSC_EXTERN PetscErrorCode MatPartitioningCreate(MPI_Comm,MatPartitioning*); 1355 PETSC_EXTERN PetscErrorCode MatPartitioningSetType(MatPartitioning,MatPartitioningType); 1356 PETSC_EXTERN PetscErrorCode MatPartitioningSetNParts(MatPartitioning,PetscInt); 1357 PETSC_EXTERN PetscErrorCode MatPartitioningSetAdjacency(MatPartitioning,Mat); 1358 PETSC_EXTERN PetscErrorCode MatPartitioningSetVertexWeights(MatPartitioning,const PetscInt[]); 1359 PETSC_EXTERN PetscErrorCode MatPartitioningSetPartitionWeights(MatPartitioning,const PetscReal []); 1360 PETSC_EXTERN PetscErrorCode MatPartitioningApply(MatPartitioning,IS*); 1361 PETSC_EXTERN PetscErrorCode MatPartitioningImprove(MatPartitioning,IS*); 1362 PETSC_EXTERN PetscErrorCode MatPartitioningViewImbalance(MatPartitioning,IS); 1363 PETSC_EXTERN PetscErrorCode MatPartitioningApplyND(MatPartitioning,IS*); 1364 PETSC_EXTERN PetscErrorCode MatPartitioningDestroy(MatPartitioning*); 1365 1366 PETSC_EXTERN PetscErrorCode MatPartitioningRegister(const char[],PetscErrorCode (*)(MatPartitioning)); 1367 1368 1369 1370 PETSC_EXTERN PetscErrorCode MatPartitioningView(MatPartitioning,PetscViewer); 1371 PETSC_STATIC_INLINE PetscErrorCode MatPartitioningViewFromOptions(MatPartitioning A,PetscObject B,const char name[]) {return PetscObjectViewFromOptions((PetscObject)A,B,name);} 1372 1373 PETSC_EXTERN PetscErrorCode MatPartitioningSetFromOptions(MatPartitioning); 1374 PETSC_EXTERN PetscErrorCode MatPartitioningGetType(MatPartitioning,MatPartitioningType*); 1375 1376 PETSC_EXTERN PetscErrorCode MatPartitioningParmetisSetRepartition(MatPartitioning part); 1377 PETSC_EXTERN PetscErrorCode MatPartitioningParmetisSetCoarseSequential(MatPartitioning); 1378 PETSC_EXTERN PetscErrorCode MatPartitioningParmetisGetEdgeCut(MatPartitioning, PetscInt *); 1379 1380 typedef enum { MP_CHACO_MULTILEVEL=1,MP_CHACO_SPECTRAL=2,MP_CHACO_LINEAR=4,MP_CHACO_RANDOM=5,MP_CHACO_SCATTERED=6 } MPChacoGlobalType; 1381 PETSC_EXTERN const char *const MPChacoGlobalTypes[]; 1382 typedef enum { MP_CHACO_KERNIGHAN=1,MP_CHACO_NONE=2 } MPChacoLocalType; 1383 PETSC_EXTERN const char *const MPChacoLocalTypes[]; 1384 typedef enum { MP_CHACO_LANCZOS=0,MP_CHACO_RQI=1 } MPChacoEigenType; 1385 PETSC_EXTERN const char *const MPChacoEigenTypes[]; 1386 1387 PETSC_EXTERN PetscErrorCode MatPartitioningChacoSetGlobal(MatPartitioning,MPChacoGlobalType); 1388 PETSC_EXTERN PetscErrorCode MatPartitioningChacoGetGlobal(MatPartitioning,MPChacoGlobalType*); 1389 PETSC_EXTERN PetscErrorCode MatPartitioningChacoSetLocal(MatPartitioning,MPChacoLocalType); 1390 PETSC_EXTERN PetscErrorCode MatPartitioningChacoGetLocal(MatPartitioning,MPChacoLocalType*); 1391 PETSC_EXTERN PetscErrorCode MatPartitioningChacoSetCoarseLevel(MatPartitioning,PetscReal); 1392 PETSC_EXTERN PetscErrorCode MatPartitioningChacoSetEigenSolver(MatPartitioning,MPChacoEigenType); 1393 PETSC_EXTERN PetscErrorCode MatPartitioningChacoGetEigenSolver(MatPartitioning,MPChacoEigenType*); 1394 PETSC_EXTERN PetscErrorCode MatPartitioningChacoSetEigenTol(MatPartitioning,PetscReal); 1395 PETSC_EXTERN PetscErrorCode MatPartitioningChacoGetEigenTol(MatPartitioning,PetscReal*); 1396 PETSC_EXTERN PetscErrorCode MatPartitioningChacoSetEigenNumber(MatPartitioning,PetscInt); 1397 PETSC_EXTERN PetscErrorCode MatPartitioningChacoGetEigenNumber(MatPartitioning,PetscInt*); 1398 1399 #define MP_PARTY_OPT "opt" 1400 #define MP_PARTY_LIN "lin" 1401 #define MP_PARTY_SCA "sca" 1402 #define MP_PARTY_RAN "ran" 1403 #define MP_PARTY_GBF "gbf" 1404 #define MP_PARTY_GCF "gcf" 1405 #define MP_PARTY_BUB "bub" 1406 #define MP_PARTY_DEF "def" 1407 PETSC_EXTERN PetscErrorCode MatPartitioningPartySetGlobal(MatPartitioning,const char*); 1408 #define MP_PARTY_HELPFUL_SETS "hs" 1409 #define MP_PARTY_KERNIGHAN_LIN "kl" 1410 #define MP_PARTY_NONE "no" 1411 PETSC_EXTERN PetscErrorCode MatPartitioningPartySetLocal(MatPartitioning,const char*); 1412 PETSC_EXTERN PetscErrorCode MatPartitioningPartySetCoarseLevel(MatPartitioning,PetscReal); 1413 PETSC_EXTERN PetscErrorCode MatPartitioningPartySetBipart(MatPartitioning,PetscBool); 1414 PETSC_EXTERN PetscErrorCode MatPartitioningPartySetMatchOptimization(MatPartitioning,PetscBool); 1415 1416 typedef enum { MP_PTSCOTCH_DEFAULT,MP_PTSCOTCH_QUALITY,MP_PTSCOTCH_SPEED,MP_PTSCOTCH_BALANCE,MP_PTSCOTCH_SAFETY,MP_PTSCOTCH_SCALABILITY } MPPTScotchStrategyType; 1417 PETSC_EXTERN const char *const MPPTScotchStrategyTypes[]; 1418 1419 PETSC_EXTERN PetscErrorCode MatPartitioningPTScotchSetImbalance(MatPartitioning,PetscReal); 1420 PETSC_EXTERN PetscErrorCode MatPartitioningPTScotchGetImbalance(MatPartitioning,PetscReal*); 1421 PETSC_EXTERN PetscErrorCode MatPartitioningPTScotchSetStrategy(MatPartitioning,MPPTScotchStrategyType); 1422 PETSC_EXTERN PetscErrorCode MatPartitioningPTScotchGetStrategy(MatPartitioning,MPPTScotchStrategyType*); 1423 1424 /* 1425 * hierarchical partitioning 1426 */ 1427 PETSC_EXTERN PetscErrorCode MatPartitioningHierarchicalGetFineparts(MatPartitioning,IS*); 1428 PETSC_EXTERN PetscErrorCode MatPartitioningHierarchicalGetCoarseparts(MatPartitioning,IS*); 1429 PETSC_EXTERN PetscErrorCode MatPartitioningHierarchicalSetNcoarseparts(MatPartitioning,PetscInt); 1430 PETSC_EXTERN PetscErrorCode MatPartitioningHierarchicalSetNfineparts(MatPartitioning, PetscInt); 1431 1432 PETSC_EXTERN PetscErrorCode MatMeshToVertexGraph(Mat,PetscInt,Mat*); 1433 PETSC_EXTERN PetscErrorCode MatMeshToCellGraph(Mat,PetscInt,Mat*); 1434 1435 /* 1436 If you add entries here you must also add them to petsc/finclude/petscmat.h 1437 */ 1438 typedef enum { MATOP_SET_VALUES=0, 1439 MATOP_GET_ROW=1, 1440 MATOP_RESTORE_ROW=2, 1441 MATOP_MULT=3, 1442 MATOP_MULT_ADD=4, 1443 MATOP_MULT_TRANSPOSE=5, 1444 MATOP_MULT_TRANSPOSE_ADD=6, 1445 MATOP_SOLVE=7, 1446 MATOP_SOLVE_ADD=8, 1447 MATOP_SOLVE_TRANSPOSE=9, 1448 MATOP_SOLVE_TRANSPOSE_ADD=10, 1449 MATOP_LUFACTOR=11, 1450 MATOP_CHOLESKYFACTOR=12, 1451 MATOP_SOR=13, 1452 MATOP_TRANSPOSE=14, 1453 MATOP_GETINFO=15, 1454 MATOP_EQUAL=16, 1455 MATOP_GET_DIAGONAL=17, 1456 MATOP_DIAGONAL_SCALE=18, 1457 MATOP_NORM=19, 1458 MATOP_ASSEMBLY_BEGIN=20, 1459 MATOP_ASSEMBLY_END=21, 1460 MATOP_SET_OPTION=22, 1461 MATOP_ZERO_ENTRIES=23, 1462 MATOP_ZERO_ROWS=24, 1463 MATOP_LUFACTOR_SYMBOLIC=25, 1464 MATOP_LUFACTOR_NUMERIC=26, 1465 MATOP_CHOLESKY_FACTOR_SYMBOLIC=27, 1466 MATOP_CHOLESKY_FACTOR_NUMERIC=28, 1467 MATOP_SETUP_PREALLOCATION=29, 1468 MATOP_ILUFACTOR_SYMBOLIC=30, 1469 MATOP_ICCFACTOR_SYMBOLIC=31, 1470 MATOP_GET_DIAGONAL_BLOCK=32, 1471 MATOP_FREE_INTER_STRUCT=33, 1472 MATOP_DUPLICATE=34, 1473 MATOP_FORWARD_SOLVE=35, 1474 MATOP_BACKWARD_SOLVE=36, 1475 MATOP_ILUFACTOR=37, 1476 MATOP_ICCFACTOR=38, 1477 MATOP_AXPY=39, 1478 MATOP_CREATE_SUBMATRICES=40, 1479 MATOP_INCREASE_OVERLAP=41, 1480 MATOP_GET_VALUES=42, 1481 MATOP_COPY=43, 1482 MATOP_GET_ROW_MAX=44, 1483 MATOP_SCALE=45, 1484 MATOP_SHIFT=46, 1485 MATOP_DIAGONAL_SET=47, 1486 MATOP_ZERO_ROWS_COLUMNS=48, 1487 MATOP_SET_RANDOM=49, 1488 MATOP_GET_ROW_IJ=50, 1489 MATOP_RESTORE_ROW_IJ=51, 1490 MATOP_GET_COLUMN_IJ=52, 1491 MATOP_RESTORE_COLUMN_IJ=53, 1492 MATOP_FDCOLORING_CREATE=54, 1493 MATOP_COLORING_PATCH=55, 1494 MATOP_SET_UNFACTORED=56, 1495 MATOP_PERMUTE=57, 1496 MATOP_SET_VALUES_BLOCKED=58, 1497 MATOP_CREATE_SUBMATRIX=59, 1498 MATOP_DESTROY=60, 1499 MATOP_VIEW=61, 1500 MATOP_CONVERT_FROM=62, 1501 MATOP_MATMAT_MULT=63, 1502 MATOP_MATMAT_MULT_SYMBOLIC=64, 1503 MATOP_MATMAT_MULT_NUMERIC=65, 1504 MATOP_SET_LOCAL_TO_GLOBAL_MAP=66, 1505 MATOP_SET_VALUES_LOCAL=67, 1506 MATOP_ZERO_ROWS_LOCAL=68, 1507 MATOP_GET_ROW_MAX_ABS=69, 1508 MATOP_GET_ROW_MIN_ABS=70, 1509 MATOP_CONVERT=71, 1510 MATOP_SET_COLORING=72, 1511 /* MATOP_PLACEHOLDER_73=73, */ 1512 MATOP_SET_VALUES_ADIFOR=74, 1513 MATOP_FD_COLORING_APPLY=75, 1514 MATOP_SET_FROM_OPTIONS=76, 1515 MATOP_MULT_CONSTRAINED=77, 1516 MATOP_MULT_TRANSPOSE_CONSTRAIN=78, 1517 MATOP_FIND_ZERO_DIAGONALS=79, 1518 MATOP_MULT_MULTIPLE=80, 1519 MATOP_SOLVE_MULTIPLE=81, 1520 MATOP_GET_INERTIA=82, 1521 MATOP_LOAD=83, 1522 MATOP_IS_SYMMETRIC=84, 1523 MATOP_IS_HERMITIAN=85, 1524 MATOP_IS_STRUCTURALLY_SYMMETRIC=86, 1525 MATOP_SET_VALUES_BLOCKEDLOCAL=87, 1526 MATOP_CREATE_VECS=88, 1527 MATOP_MAT_MULT=89, 1528 MATOP_MAT_MULT_SYMBOLIC=90, 1529 MATOP_MAT_MULT_NUMERIC=91, 1530 MATOP_PTAP=92, 1531 MATOP_PTAP_SYMBOLIC=93, 1532 MATOP_PTAP_NUMERIC=94, 1533 MATOP_MAT_TRANSPOSE_MULT=95, 1534 MATOP_MAT_TRANSPOSE_MULT_SYMBO=96, 1535 MATOP_MAT_TRANSPOSE_MULT_NUMER=97, 1536 /* MATOP_PLACEHOLDER_98=98, */ 1537 /* MATOP_PLACEHOLDER_99=99, */ 1538 /* MATOP_PLACEHOLDER_100=100, */ 1539 /* MATOP_PLACEHOLDER_101=101, */ 1540 MATOP_CONJUGATE=102, 1541 /* MATOP_PLACEHOLDER_103=103, */ 1542 MATOP_SET_VALUES_ROW=104, 1543 MATOP_REAL_PART=105, 1544 MATOP_IMAGINARY_PART=106, 1545 MATOP_GET_ROW_UPPER_TRIANGULAR=107, 1546 MATOP_RESTORE_ROW_UPPER_TRIANG=108, 1547 MATOP_MAT_SOLVE=109, 1548 MATOP_MAT_SOLVE_TRANSPOSE=110, 1549 MATOP_GET_ROW_MIN=111, 1550 MATOP_GET_COLUMN_VECTOR=112, 1551 MATOP_MISSING_DIAGONAL=113, 1552 MATOP_GET_SEQ_NONZERO_STRUCTUR=114, 1553 MATOP_CREATE=115, 1554 MATOP_GET_GHOSTS=116, 1555 MATOP_GET_LOCAL_SUB_MATRIX=117, 1556 MATOP_RESTORE_LOCALSUB_MATRIX=118, 1557 MATOP_MULT_DIAGONAL_BLOCK=119, 1558 MATOP_HERMITIAN_TRANSPOSE=120, 1559 MATOP_MULT_HERMITIAN_TRANSPOSE=121, 1560 MATOP_MULT_HERMITIAN_TRANS_ADD=122, 1561 MATOP_GET_MULTI_PROC_BLOCK=123, 1562 MATOP_FIND_NONZERO_ROWS=124, 1563 MATOP_GET_COLUMN_NORMS=125, 1564 MATOP_INVERT_BLOCK_DIAGONAL=126, 1565 /* MATOP_PLACEHOLDER_127=127, */ 1566 MATOP_CREATE_SUB_MATRICES_MPI=128, 1567 MATOP_SET_VALUES_BATCH=129, 1568 MATOP_TRANSPOSE_MAT_MULT=130, 1569 MATOP_TRANSPOSE_MAT_MULT_SYMBO=131, 1570 MATOP_TRANSPOSE_MAT_MULT_NUMER=132, 1571 MATOP_TRANSPOSE_COLORING_CREAT=133, 1572 MATOP_TRANS_COLORING_APPLY_SPT=134, 1573 MATOP_TRANS_COLORING_APPLY_DEN=135, 1574 MATOP_RART=136, 1575 MATOP_RART_SYMBOLIC=137, 1576 MATOP_RART_NUMERIC=138, 1577 MATOP_SET_BLOCK_SIZES=139, 1578 MATOP_AYPX=140, 1579 MATOP_RESIDUAL=141, 1580 MATOP_FDCOLORING_SETUP=142, 1581 MATOP_MPICONCATENATESEQ=144, 1582 MATOP_DESTROYSUBMATRICES=145 1583 } MatOperation; 1584 PETSC_EXTERN PetscErrorCode MatSetOperation(Mat,MatOperation,void(*)(void)); 1585 PETSC_EXTERN PetscErrorCode MatGetOperation(Mat,MatOperation,void(**)(void)); 1586 PETSC_EXTERN PetscErrorCode MatHasOperation(Mat,MatOperation,PetscBool *); 1587 PETSC_EXTERN PetscErrorCode MatHasCongruentLayouts(Mat,PetscBool *); 1588 PETSC_EXTERN PetscErrorCode MatFreeIntermediateDataStructures(Mat); 1589 1590 PETSC_EXTERN PetscErrorCode MatShellSetOperation(Mat,MatOperation,void(*)(void)); 1591 PETSC_EXTERN PetscErrorCode MatShellGetOperation(Mat,MatOperation,void(**)(void)); 1592 PETSC_EXTERN PetscErrorCode MatShellSetContext(Mat,void*); 1593 PETSC_EXTERN PetscErrorCode MatShellTestMult(Mat,PetscErrorCode (*)(void*,Vec,Vec),Vec,void*,PetscBool*); 1594 PETSC_EXTERN PetscErrorCode MatShellTestMultTranspose(Mat,PetscErrorCode (*)(void*,Vec,Vec),Vec,void*,PetscBool*); 1595 PETSC_EXTERN PetscErrorCode MatShellSetManageScalingShifts(Mat); 1596 1597 /* 1598 Codes for matrices stored on disk. By default they are 1599 stored in a universal format. By changing the format with 1600 PetscViewerPushFormat(viewer,PETSC_VIEWER_NATIVE); the matrices will 1601 be stored in a way natural for the matrix, for example dense matrices 1602 would be stored as dense. Matrices stored this way may only be 1603 read into matrices of the same type. 1604 */ 1605 #define MATRIX_BINARY_FORMAT_DENSE -1 1606 1607 PETSC_EXTERN PetscErrorCode MatMPIBAIJSetHashTableFactor(Mat,PetscReal); 1608 1609 PETSC_EXTERN PetscErrorCode MatISSetLocalMatType(Mat,MatType); 1610 PETSC_EXTERN PetscErrorCode MatISSetPreallocation(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[]); 1611 PETSC_EXTERN PetscErrorCode MatISStoreL2L(Mat,PetscBool); 1612 PETSC_EXTERN PetscErrorCode MatISFixLocalEmpty(Mat,PetscBool); 1613 PETSC_EXTERN PetscErrorCode MatISGetLocalMat(Mat,Mat*); 1614 PETSC_EXTERN PetscErrorCode MatISRestoreLocalMat(Mat,Mat*); 1615 PETSC_EXTERN PetscErrorCode MatISSetLocalMat(Mat,Mat); 1616 PETSC_EXTERN PETSC_DEPRECATED("Use the MatConvert() interface") PetscErrorCode MatISGetMPIXAIJ(Mat,MatReuse,Mat*); 1617 1618 /*S 1619 MatNullSpace - Object that removes a null space from a vector, i.e. 1620 orthogonalizes the vector to a subsapce 1621 1622 Level: advanced 1623 1624 Concepts: matrix; linear operator, null space 1625 1626 Users manual sections: 1627 . sec_singular 1628 1629 .seealso: MatNullSpaceCreate() 1630 S*/ 1631 typedef struct _p_MatNullSpace* MatNullSpace; 1632 1633 PETSC_EXTERN PetscErrorCode MatNullSpaceCreate(MPI_Comm,PetscBool ,PetscInt,const Vec[],MatNullSpace*); 1634 PETSC_EXTERN PetscErrorCode MatNullSpaceSetFunction(MatNullSpace,PetscErrorCode (*)(MatNullSpace,Vec,void*),void*); 1635 PETSC_EXTERN PetscErrorCode MatNullSpaceDestroy(MatNullSpace*); 1636 PETSC_EXTERN PetscErrorCode MatNullSpaceRemove(MatNullSpace,Vec); 1637 PETSC_EXTERN PetscErrorCode MatGetNullSpace(Mat, MatNullSpace *); 1638 PETSC_EXTERN PetscErrorCode MatGetTransposeNullSpace(Mat, MatNullSpace *); 1639 PETSC_EXTERN PetscErrorCode MatSetTransposeNullSpace(Mat,MatNullSpace); 1640 PETSC_EXTERN PetscErrorCode MatSetNullSpace(Mat,MatNullSpace); 1641 PETSC_EXTERN PetscErrorCode MatSetNearNullSpace(Mat,MatNullSpace); 1642 PETSC_EXTERN PetscErrorCode MatGetNearNullSpace(Mat,MatNullSpace*); 1643 PETSC_EXTERN PetscErrorCode MatNullSpaceTest(MatNullSpace,Mat,PetscBool *); 1644 PETSC_EXTERN PetscErrorCode MatNullSpaceView(MatNullSpace,PetscViewer); 1645 PETSC_EXTERN PetscErrorCode MatNullSpaceGetVecs(MatNullSpace,PetscBool*,PetscInt*,const Vec**); 1646 PETSC_EXTERN PetscErrorCode MatNullSpaceCreateRigidBody(Vec,MatNullSpace*); 1647 1648 PETSC_EXTERN PetscErrorCode MatReorderingSeqSBAIJ(Mat,IS); 1649 PETSC_EXTERN PetscErrorCode MatMPISBAIJSetHashTableFactor(Mat,PetscReal); 1650 PETSC_EXTERN PetscErrorCode MatSeqSBAIJSetColumnIndices(Mat,PetscInt *); 1651 PETSC_EXTERN PetscErrorCode MatSeqBAIJInvertBlockDiagonal(Mat); 1652 1653 PETSC_EXTERN PetscErrorCode MatCreateMAIJ(Mat,PetscInt,Mat*); 1654 PETSC_EXTERN PetscErrorCode MatMAIJRedimension(Mat,PetscInt,Mat*); 1655 PETSC_EXTERN PetscErrorCode MatMAIJGetAIJ(Mat,Mat*); 1656 1657 PETSC_EXTERN PetscErrorCode MatComputeExplicitOperator(Mat,Mat*); 1658 PETSC_EXTERN PetscErrorCode MatComputeExplicitOperatorTranspose(Mat,Mat*); 1659 1660 PETSC_EXTERN PetscErrorCode MatDiagonalScaleLocal(Mat,Vec); 1661 1662 PETSC_EXTERN PetscErrorCode MatCreateMFFD(MPI_Comm,PetscInt,PetscInt,PetscInt,PetscInt,Mat*); 1663 PETSC_EXTERN PetscErrorCode MatMFFDSetBase(Mat,Vec,Vec); 1664 PETSC_EXTERN PetscErrorCode MatMFFDSetFunction(Mat,PetscErrorCode(*)(void*,Vec,Vec),void*); 1665 PETSC_EXTERN PetscErrorCode MatMFFDSetFunctioni(Mat,PetscErrorCode (*)(void*,PetscInt,Vec,PetscScalar*)); 1666 PETSC_EXTERN PetscErrorCode MatMFFDSetFunctioniBase(Mat,PetscErrorCode (*)(void*,Vec)); 1667 PETSC_EXTERN PetscErrorCode MatMFFDSetHHistory(Mat,PetscScalar[],PetscInt); 1668 PETSC_EXTERN PetscErrorCode MatMFFDResetHHistory(Mat); 1669 PETSC_EXTERN PetscErrorCode MatMFFDSetFunctionError(Mat,PetscReal); 1670 PETSC_EXTERN PetscErrorCode MatMFFDSetPeriod(Mat,PetscInt); 1671 PETSC_EXTERN PetscErrorCode MatMFFDGetH(Mat,PetscScalar *); 1672 PETSC_EXTERN PetscErrorCode MatMFFDSetOptionsPrefix(Mat,const char[]); 1673 PETSC_EXTERN PetscErrorCode MatMFFDCheckPositivity(void*,Vec,Vec,PetscScalar*); 1674 PETSC_EXTERN PetscErrorCode MatMFFDSetCheckh(Mat,PetscErrorCode (*)(void*,Vec,Vec,PetscScalar*),void*); 1675 1676 /*S 1677 MatMFFD - A data structured used to manage the computation of the h differencing parameter for matrix-free 1678 Jacobian vector products 1679 1680 Notes: 1681 MATMFFD is a specific MatType which uses the MatMFFD data structure 1682 1683 MatMFFD*() methods actually take the Mat as their first argument. Not a MatMFFD data structure 1684 1685 Level: developer 1686 1687 .seealso: MATMFFD, MatCreateMFFD(), MatMFFDSetFuction(), MatMFFDSetType(), MatMFFDRegister() 1688 S*/ 1689 typedef struct _p_MatMFFD* MatMFFD; 1690 1691 /*J 1692 MatMFFDType - algorithm used to compute the h used in computing matrix-vector products via differencing of the function 1693 1694 Level: beginner 1695 1696 .seealso: MatMFFDSetType(), MatMFFDRegister() 1697 J*/ 1698 typedef const char* MatMFFDType; 1699 #define MATMFFD_DS "ds" 1700 #define MATMFFD_WP "wp" 1701 1702 PETSC_EXTERN PetscErrorCode MatMFFDSetType(Mat,MatMFFDType); 1703 PETSC_EXTERN PetscErrorCode MatMFFDRegister(const char[],PetscErrorCode (*)(MatMFFD)); 1704 1705 PETSC_EXTERN PetscErrorCode MatMFFDDSSetUmin(Mat,PetscReal); 1706 PETSC_EXTERN PetscErrorCode MatMFFDWPSetComputeNormU(Mat,PetscBool ); 1707 1708 PETSC_EXTERN PetscErrorCode MatFDColoringSetType(MatFDColoring,MatMFFDType); 1709 1710 PETSC_EXTERN PetscErrorCode PetscViewerMathematicaPutMatrix(PetscViewer, PetscInt, PetscInt, PetscReal *); 1711 PETSC_EXTERN PetscErrorCode PetscViewerMathematicaPutCSRMatrix(PetscViewer, PetscInt, PetscInt, PetscInt *, PetscInt *, PetscReal *); 1712 1713 /* 1714 PETSc interface to MUMPS 1715 */ 1716 #ifdef PETSC_HAVE_MUMPS 1717 PETSC_EXTERN PetscErrorCode MatMumpsSetIcntl(Mat,PetscInt,PetscInt); 1718 PETSC_EXTERN PetscErrorCode MatMumpsGetIcntl(Mat,PetscInt,PetscInt*); 1719 PETSC_EXTERN PetscErrorCode MatMumpsSetCntl(Mat,PetscInt,PetscReal); 1720 PETSC_EXTERN PetscErrorCode MatMumpsGetCntl(Mat,PetscInt,PetscReal*); 1721 1722 PETSC_EXTERN PetscErrorCode MatMumpsGetInfo(Mat,PetscInt,PetscInt*); 1723 PETSC_EXTERN PetscErrorCode MatMumpsGetInfog(Mat,PetscInt,PetscInt*); 1724 PETSC_EXTERN PetscErrorCode MatMumpsGetRinfo(Mat,PetscInt,PetscReal*); 1725 PETSC_EXTERN PetscErrorCode MatMumpsGetRinfog(Mat,PetscInt,PetscReal*); 1726 PETSC_EXTERN PetscErrorCode MatMumpsGetInverse(Mat,Mat); 1727 PETSC_EXTERN PetscErrorCode MatMumpsGetInverseTranspose(Mat,Mat); 1728 #endif 1729 1730 /* 1731 PETSc interface to Mkl_Pardiso 1732 */ 1733 #ifdef PETSC_HAVE_MKL_PARDISO 1734 PETSC_EXTERN PetscErrorCode MatMkl_PardisoSetCntl(Mat,PetscInt,PetscInt); 1735 #endif 1736 1737 /* 1738 PETSc interface to Mkl_CPardiso 1739 */ 1740 #ifdef PETSC_HAVE_MKL_CPARDISO 1741 PETSC_EXTERN PetscErrorCode MatMkl_CPardisoSetCntl(Mat,PetscInt,PetscInt); 1742 #endif 1743 1744 /* 1745 PETSc interface to SUPERLU 1746 */ 1747 #ifdef PETSC_HAVE_SUPERLU 1748 PETSC_EXTERN PetscErrorCode MatSuperluSetILUDropTol(Mat,PetscReal); 1749 #endif 1750 1751 /* 1752 PETSc interface to SUPERLU_DIST 1753 */ 1754 #ifdef PETSC_HAVE_SUPERLU_DIST 1755 PETSC_EXTERN PetscErrorCode MatSuperluDistGetDiagU(Mat,PetscScalar*); 1756 #endif 1757 1758 /* 1759 PETSc interface to STRUMPACK 1760 */ 1761 #ifdef PETSC_HAVE_STRUMPACK 1762 /*E 1763 MatSTRUMPACKReordering - sparsity reducing ordering to be used in STRUMPACK 1764 1765 Level: intermediate 1766 E*/ 1767 typedef enum {MAT_STRUMPACK_NATURAL=0, 1768 MAT_STRUMPACK_METIS=1, 1769 MAT_STRUMPACK_PARMETIS=2, 1770 MAT_STRUMPACK_SCOTCH=3, 1771 MAT_STRUMPACK_PTSCOTCH=4, 1772 MAT_STRUMPACK_RCM=5} MatSTRUMPACKReordering; 1773 PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetReordering(Mat,MatSTRUMPACKReordering); 1774 PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetColPerm(Mat,PetscBool); 1775 PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetHSSRelTol(Mat,PetscReal); 1776 PETSC_DEPRECATED ("Use MatSTRUMPACKSetHSSRelTol()") PETSC_STATIC_INLINE PetscErrorCode MatSTRUMPACKSetHSSRelCompTol(Mat mat,PetscReal rtol) {return MatSTRUMPACKSetHSSRelTol(mat,rtol);} 1777 PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetHSSAbsTol(Mat,PetscReal); 1778 PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetHSSMinSepSize(Mat,PetscInt); 1779 PETSC_DEPRECATED ("Use MatSTRUMPACKSetHSSMinSepSize()") PETSC_STATIC_INLINE PetscErrorCode MatSTRUMPACKSetHSSMinSize(Mat mat,PetscInt hssminsize) {return MatSTRUMPACKSetHSSMinSepSize(mat,hssminsize);} 1780 PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetHSSMaxRank(Mat,PetscInt); 1781 PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetHSSLeafSize(Mat,PetscInt); 1782 #endif 1783 1784 1785 #ifdef PETSC_HAVE_CUDA 1786 /*E 1787 MatCUSPARSEStorageFormat - indicates the storage format for CUSPARSE (GPU) 1788 matrices. 1789 1790 Not Collective 1791 1792 + MAT_CUSPARSE_CSR - Compressed Sparse Row 1793 . MAT_CUSPARSE_ELL - Ellpack (requires CUDA 4.2 or later). 1794 - MAT_CUSPARSE_HYB - Hybrid, a combination of Ellpack and Coordinate format (requires CUDA 4.2 or later). 1795 1796 Level: intermediate 1797 1798 Any additions/changes here MUST also be made in include/petsc/finclude/petscmat.h 1799 1800 .seealso: MatCUSPARSESetFormat(), MatCUSPARSEFormatOperation 1801 E*/ 1802 1803 typedef enum {MAT_CUSPARSE_CSR, MAT_CUSPARSE_ELL, MAT_CUSPARSE_HYB} MatCUSPARSEStorageFormat; 1804 1805 /* these will be strings associated with enumerated type defined above */ 1806 PETSC_EXTERN const char *const MatCUSPARSEStorageFormats[]; 1807 1808 /*E 1809 MatCUSPARSEFormatOperation - indicates the operation of CUSPARSE (GPU) 1810 matrices whose operation should use a particular storage format. 1811 1812 Not Collective 1813 1814 + MAT_CUSPARSE_MULT_DIAG - sets the storage format for the diagonal matrix in the parallel MatMult 1815 . MAT_CUSPARSE_MULT_OFFDIAG - sets the storage format for the offdiagonal matrix in the parallel MatMult 1816 . MAT_CUSPARSE_MULT - sets the storage format for the entire matrix in the serial (single GPU) MatMult 1817 - MAT_CUSPARSE_ALL - sets the storage format for all CUSPARSE (GPU) matrices 1818 1819 Level: intermediate 1820 1821 .seealso: MatCUSPARSESetFormat(), MatCUSPARSEStorageFormat 1822 E*/ 1823 typedef enum {MAT_CUSPARSE_MULT_DIAG, MAT_CUSPARSE_MULT_OFFDIAG, MAT_CUSPARSE_MULT, MAT_CUSPARSE_ALL} MatCUSPARSEFormatOperation; 1824 1825 PETSC_EXTERN PetscErrorCode MatCreateSeqAIJCUSPARSE(MPI_Comm,PetscInt,PetscInt,PetscInt,const PetscInt[],Mat*); 1826 PETSC_EXTERN PetscErrorCode MatCreateAIJCUSPARSE(MPI_Comm,PetscInt,PetscInt,PetscInt,PetscInt,PetscInt,const PetscInt[],PetscInt,const PetscInt[],Mat*); 1827 PETSC_EXTERN PetscErrorCode MatCUSPARSESetFormat(Mat,MatCUSPARSEFormatOperation,MatCUSPARSEStorageFormat); 1828 #endif 1829 1830 #if defined(PETSC_HAVE_VIENNACL) 1831 PETSC_EXTERN PetscErrorCode MatCreateSeqAIJViennaCL(MPI_Comm,PetscInt,PetscInt,PetscInt,const PetscInt[],Mat*); 1832 PETSC_EXTERN PetscErrorCode MatCreateAIJViennaCL(MPI_Comm,PetscInt,PetscInt,PetscInt,PetscInt,PetscInt,const PetscInt[],PetscInt,const PetscInt[],Mat*); 1833 #endif 1834 1835 /* 1836 PETSc interface to FFTW 1837 */ 1838 #if defined(PETSC_HAVE_FFTW) 1839 PETSC_EXTERN PetscErrorCode VecScatterPetscToFFTW(Mat,Vec,Vec); 1840 PETSC_EXTERN PetscErrorCode VecScatterFFTWToPetsc(Mat,Vec,Vec); 1841 PETSC_EXTERN PetscErrorCode MatCreateVecsFFTW(Mat,Vec*,Vec*,Vec*); 1842 #endif 1843 1844 PETSC_EXTERN PetscErrorCode MatCreateNest(MPI_Comm,PetscInt,const IS[],PetscInt,const IS[],const Mat[],Mat*); 1845 PETSC_EXTERN PetscErrorCode MatNestGetSize(Mat,PetscInt*,PetscInt*); 1846 PETSC_EXTERN PetscErrorCode MatNestGetISs(Mat,IS[],IS[]); 1847 PETSC_EXTERN PetscErrorCode MatNestGetLocalISs(Mat,IS[],IS[]); 1848 PETSC_EXTERN PetscErrorCode MatNestGetSubMats(Mat,PetscInt*,PetscInt*,Mat***); 1849 PETSC_EXTERN PetscErrorCode MatNestGetSubMat(Mat,PetscInt,PetscInt,Mat*); 1850 PETSC_EXTERN PetscErrorCode MatNestSetVecType(Mat,VecType); 1851 PETSC_EXTERN PetscErrorCode MatNestSetSubMats(Mat,PetscInt,const IS[],PetscInt,const IS[],const Mat[]); 1852 PETSC_EXTERN PetscErrorCode MatNestSetSubMat(Mat,PetscInt,PetscInt,Mat); 1853 1854 PETSC_EXTERN PetscErrorCode MatChop(Mat,PetscReal); 1855 PETSC_EXTERN PetscErrorCode MatComputeBandwidth(Mat,PetscReal,PetscInt*); 1856 1857 PETSC_EXTERN PetscErrorCode MatSubdomainsCreateCoalesce(Mat,PetscInt,PetscInt*,IS**); 1858 1859 PETSC_EXTERN PetscErrorCode MatPreallocatorPreallocate(Mat,PetscBool,Mat); 1860 1861 PETSC_INTERN PetscErrorCode MatHeaderMerge(Mat,Mat*); 1862 PETSC_EXTERN PetscErrorCode MatHeaderReplace(Mat,Mat*); 1863 1864 #endif 1865