1 /* 2 Include file for the matrix component of PETSc 3 */ 4 #ifndef __PETSCMAT_H 5 #define __PETSCMAT_H 6 #include <petscvec.h> 7 8 /*S 9 Mat - Abstract PETSc matrix object used to manage all linear operators in PETSc, even those without 10 an explicit sparse representation (such as matrix-free operators) 11 12 Level: beginner 13 14 Concepts: matrix; linear operator 15 16 .seealso: MatCreate(), MatType, MatSetType(), MatDestroy() 17 S*/ 18 typedef struct _p_Mat* Mat; 19 20 /*J 21 MatType - String with the name of a PETSc matrix type 22 23 Level: beginner 24 25 .seealso: MatSetType(), Mat, MatSolverType, MatRegister() 26 J*/ 27 typedef const char* MatType; 28 #define MATSAME "same" 29 #define MATMAIJ "maij" 30 #define MATSEQMAIJ "seqmaij" 31 #define MATMPIMAIJ "mpimaij" 32 #define MATIS "is" 33 #define MATAIJ "aij" 34 #define MATSEQAIJ "seqaij" 35 #define MATMPIAIJ "mpiaij" 36 #define MATAIJCRL "aijcrl" 37 #define MATSEQAIJCRL "seqaijcrl" 38 #define MATMPIAIJCRL "mpiaijcrl" 39 #define MATAIJCUSPARSE "aijcusparse" 40 #define MATSEQAIJCUSPARSE "seqaijcusparse" 41 #define MATMPIAIJCUSPARSE "mpiaijcusparse" 42 #define MATAIJVIENNACL "aijviennacl" 43 #define MATSEQAIJVIENNACL "seqaijviennacl" 44 #define MATMPIAIJVIENNACL "mpiaijviennacl" 45 #define MATAIJPERM "aijperm" 46 #define MATSEQAIJPERM "seqaijperm" 47 #define MATMPIAIJPERM "mpiaijperm" 48 #define MATAIJMKL "aijmkl" 49 #define MATSEQAIJMKL "seqaijmkl" 50 #define MATMPIAIJMKL "mpiaijmkl" 51 #define MATBAIJMKL "baijmkl" 52 #define MATSEQBAIJMKL "seqbaijmkl" 53 #define MATMPIBAIJMKL "mpibaijmkl" 54 #define MATSHELL "shell" 55 #define MATDENSE "dense" 56 #define MATSEQDENSE "seqdense" 57 #define MATMPIDENSE "mpidense" 58 #define MATELEMENTAL "elemental" 59 #define MATBAIJ "baij" 60 #define MATSEQBAIJ "seqbaij" 61 #define MATMPIBAIJ "mpibaij" 62 #define MATMPIADJ "mpiadj" 63 #define MATSBAIJ "sbaij" 64 #define MATSEQSBAIJ "seqsbaij" 65 #define MATMPISBAIJ "mpisbaij" 66 #define MATDAAD "daad" 67 #define MATMFFD "mffd" 68 #define MATNORMAL "normal" 69 #define MATNORMALHERMITIAN "normalh" 70 #define MATLRC "lrc" 71 #define MATSCATTER "scatter" 72 #define MATBLOCKMAT "blockmat" 73 #define MATCOMPOSITE "composite" 74 #define MATFFT "fft" 75 #define MATFFTW "fftw" 76 #define MATSEQCUFFT "seqcufft" 77 #define MATTRANSPOSEMAT "transpose" 78 #define MATSCHURCOMPLEMENT "schurcomplement" 79 #define MATPYTHON "python" 80 #define MATHYPRE "hypre" 81 #define MATHYPRESTRUCT "hyprestruct" 82 #define MATHYPRESSTRUCT "hypresstruct" 83 #define MATSUBMATRIX "submatrix" 84 #define MATLOCALREF "localref" 85 #define MATNEST "nest" 86 #define MATPREALLOCATOR "preallocator" 87 #define MATSELL "sell" 88 #define MATSEQSELL "seqsell" 89 #define MATMPISELL "mpisell" 90 #define MATDUMMY "dummy" 91 92 /*J 93 MatSolverType - String with the name of a PETSc matrix solver type. 94 95 For example: "petsc" indicates what PETSc provides, "superlu_dist" the parallel SuperLU_DIST package etc 96 97 Level: beginner 98 99 .seealso: MatGetFactor(), Mat, MatSetType(), MatType 100 J*/ 101 typedef const char* MatSolverType; 102 #define MATSOLVERSUPERLU "superlu" 103 #define MATSOLVERSUPERLU_DIST "superlu_dist" 104 #define MATSOLVERSTRUMPACK "strumpack" 105 #define MATSOLVERUMFPACK "umfpack" 106 #define MATSOLVERCHOLMOD "cholmod" 107 #define MATSOLVERKLU "klu" 108 #define MATSOLVERSPARSEELEMENTAL "sparseelemental" 109 #define MATSOLVERELEMENTAL "elemental" 110 #define MATSOLVERESSL "essl" 111 #define MATSOLVERLUSOL "lusol" 112 #define MATSOLVERMUMPS "mumps" 113 #define MATSOLVERMKL_PARDISO "mkl_pardiso" 114 #define MATSOLVERMKL_CPARDISO "mkl_cpardiso" 115 #define MATSOLVERPASTIX "pastix" 116 #define MATSOLVERMATLAB "matlab" 117 #define MATSOLVERPETSC "petsc" 118 #define MATSOLVERBAS "bas" 119 #define MATSOLVERCUSPARSE "cusparse" 120 121 /*E 122 MatFactorType - indicates what type of factorization is requested 123 124 Level: beginner 125 126 Any additions/changes here MUST also be made in include/petsc/finclude/petscmat.h 127 128 .seealso: MatSolverType, MatGetFactor() 129 E*/ 130 typedef enum {MAT_FACTOR_NONE, MAT_FACTOR_LU, MAT_FACTOR_CHOLESKY, MAT_FACTOR_ILU, MAT_FACTOR_ICC,MAT_FACTOR_ILUDT} MatFactorType; 131 PETSC_EXTERN const char *const MatFactorTypes[]; 132 133 PETSC_EXTERN PetscErrorCode MatGetFactor(Mat,MatSolverType,MatFactorType,Mat*); 134 PETSC_EXTERN PetscErrorCode MatGetFactorAvailable(Mat,MatSolverType,MatFactorType,PetscBool *); 135 PETSC_EXTERN PetscErrorCode MatFactorGetSolverType(Mat,MatSolverType*); 136 PETSC_EXTERN PetscErrorCode MatGetFactorType(Mat,MatFactorType*); 137 PETSC_EXTERN PetscErrorCode MatSolverTypeRegister(MatSolverType,const MatType,MatFactorType,PetscErrorCode(*)(Mat,MatFactorType,Mat*)); 138 PETSC_EXTERN PetscErrorCode MatSolverTypeGet(MatSolverType,const MatType,MatFactorType,PetscBool*,PetscBool*,PetscErrorCode (**)(Mat,MatFactorType,Mat*)); 139 140 /* Logging support */ 141 #define MAT_FILE_CLASSID 1211216 /* used to indicate matrices in binary files */ 142 PETSC_EXTERN PetscClassId MAT_CLASSID; 143 PETSC_EXTERN PetscClassId MAT_COLORING_CLASSID; 144 PETSC_EXTERN PetscClassId MAT_FDCOLORING_CLASSID; 145 PETSC_EXTERN PetscClassId MAT_TRANSPOSECOLORING_CLASSID; 146 PETSC_EXTERN PetscClassId MAT_PARTITIONING_CLASSID; 147 PETSC_EXTERN PetscClassId MAT_COARSEN_CLASSID; 148 PETSC_EXTERN PetscClassId MAT_NULLSPACE_CLASSID; 149 PETSC_EXTERN PetscClassId MATMFFD_CLASSID; 150 151 /*E 152 MatReuse - Indicates if matrices obtained from a previous call to MatCreateSubMatrices(), MatCreateSubMatrix(), MatConvert() or several other functions 153 are to be reused to store the new matrix values. 154 155 $ MAT_INITIAL_MATRIX - create a new matrix 156 $ MAT_REUSE_MATRIX - reuse the matrix created with a previous call that used MAT_INITIAL_MATRIX 157 $ MAT_INPLACE_MATRIX - replace the first input matrix with the new matrix (not applicable to all functions) 158 $ MAT_IGNORE_MATRIX - do not create a new matrix or reuse a give matrix, just ignore that matrix argument (not applicable to all functions) 159 160 Level: beginner 161 162 Any additions/changes here MUST also be made in include/petsc/finclude/petscmat.h 163 164 .seealso: MatCreateSubMatrices(), MatCreateSubMatrix(), MatDestroyMatrices(), MatConvert() 165 E*/ 166 typedef enum {MAT_INITIAL_MATRIX,MAT_REUSE_MATRIX,MAT_IGNORE_MATRIX,MAT_INPLACE_MATRIX} MatReuse; 167 168 /*E 169 MatCreateSubMatrixOption - Indicates if matrices obtained from a call to MatCreateSubMatrices() 170 include the matrix values. Currently it is only used by MatGetSeqNonzerostructure(). 171 172 Level: beginner 173 174 .seealso: MatGetSeqNonzerostructure() 175 E*/ 176 typedef enum {MAT_DO_NOT_GET_VALUES,MAT_GET_VALUES} MatCreateSubMatrixOption; 177 178 PETSC_EXTERN PetscErrorCode MatInitializePackage(void); 179 180 PETSC_EXTERN PetscErrorCode MatCreate(MPI_Comm,Mat*); 181 PETSC_EXTERN PetscErrorCode MatSetSizes(Mat,PetscInt,PetscInt,PetscInt,PetscInt); 182 PETSC_EXTERN PetscErrorCode MatSetType(Mat,MatType); 183 PETSC_EXTERN PetscErrorCode MatSetFromOptions(Mat); 184 PETSC_STATIC_INLINE PetscErrorCode MatViewFromOptions(Mat A,PetscObject obj,const char name[]) {return PetscObjectViewFromOptions((PetscObject)A,obj,name);} 185 PETSC_EXTERN PetscErrorCode MatRegister(const char[],PetscErrorCode(*)(Mat)); 186 PETSC_EXTERN PetscErrorCode MatRegisterBaseName(const char[],const char[],const char[]); 187 PETSC_EXTERN PetscErrorCode MatSetOptionsPrefix(Mat,const char[]); 188 PETSC_EXTERN PetscErrorCode MatAppendOptionsPrefix(Mat,const char[]); 189 PETSC_EXTERN PetscErrorCode MatGetOptionsPrefix(Mat,const char*[]); 190 PETSC_EXTERN PetscErrorCode MatSetErrorIfFailure(Mat,PetscBool); 191 192 PETSC_EXTERN PetscFunctionList MatList; 193 PETSC_EXTERN PetscFunctionList MatColoringList; 194 PETSC_EXTERN PetscFunctionList MatPartitioningList; 195 196 /*E 197 MatStructure - Indicates if two matrices have the same nonzero structure 198 199 Level: beginner 200 201 Any additions/changes here MUST also be made in include/petsc/finclude/petscmat.h 202 203 .seealso: MatCopy(), MatAXPY() 204 E*/ 205 typedef enum {DIFFERENT_NONZERO_PATTERN,SUBSET_NONZERO_PATTERN,SAME_NONZERO_PATTERN} MatStructure; 206 207 #if defined PETSC_HAVE_MKL_SPARSE 208 PETSC_EXTERN PetscErrorCode MatCreateBAIJMKL(MPI_Comm,PetscInt,PetscInt,PetscInt,PetscInt,PetscInt,PetscInt,const PetscInt[],PetscInt,const PetscInt[],Mat*); 209 PETSC_EXTERN PetscErrorCode MatCreateSeqBAIJMKL(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt nz,const PetscInt nnz[],Mat *A); 210 #endif 211 PETSC_EXTERN PetscErrorCode MatCreateSeqSELL(MPI_Comm,PetscInt,PetscInt,PetscInt,const PetscInt[],Mat*); 212 PETSC_EXTERN PetscErrorCode MatCreateSELL(MPI_Comm,PetscInt,PetscInt,PetscInt,PetscInt,PetscInt,const PetscInt[],PetscInt,const PetscInt[],Mat*); 213 PETSC_EXTERN PetscErrorCode MatSeqSELLSetPreallocation(Mat,PetscInt,const PetscInt[]); 214 PETSC_EXTERN PetscErrorCode MatMPISELLSetPreallocation(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[]); 215 216 PETSC_EXTERN PetscErrorCode MatCreateSeqDense(MPI_Comm,PetscInt,PetscInt,PetscScalar[],Mat*); 217 PETSC_EXTERN PetscErrorCode MatCreateDense(MPI_Comm,PetscInt,PetscInt,PetscInt,PetscInt,PetscScalar[],Mat*); 218 PETSC_EXTERN PetscErrorCode MatCreateSeqAIJ(MPI_Comm,PetscInt,PetscInt,PetscInt,const PetscInt[],Mat*); 219 PETSC_EXTERN PetscErrorCode MatCreateAIJ(MPI_Comm,PetscInt,PetscInt,PetscInt,PetscInt,PetscInt,const PetscInt[],PetscInt,const PetscInt[],Mat*); 220 PETSC_EXTERN PetscErrorCode MatCreateMPIAIJWithArrays(MPI_Comm,PetscInt,PetscInt,PetscInt,PetscInt,const PetscInt[],const PetscInt[],const PetscScalar[],Mat *); 221 PETSC_EXTERN PetscErrorCode MatCreateMPIAIJWithSplitArrays(MPI_Comm,PetscInt,PetscInt,PetscInt,PetscInt,PetscInt[],PetscInt[],PetscScalar[],PetscInt[],PetscInt[],PetscScalar[],Mat*); 222 PETSC_EXTERN PetscErrorCode MatCreateMPIAIJWithSeqAIJ(MPI_Comm,Mat,Mat,const PetscInt[],Mat*); 223 224 PETSC_EXTERN PetscErrorCode MatCreateSeqBAIJ(MPI_Comm,PetscInt,PetscInt,PetscInt,PetscInt,const PetscInt[],Mat*); 225 PETSC_EXTERN PetscErrorCode MatCreateBAIJ(MPI_Comm,PetscInt,PetscInt,PetscInt,PetscInt,PetscInt,PetscInt,const PetscInt[],PetscInt,const PetscInt[],Mat*); 226 PETSC_EXTERN PetscErrorCode MatCreateMPIBAIJWithArrays(MPI_Comm,PetscInt,PetscInt,PetscInt,PetscInt,PetscInt,const PetscInt[],const PetscInt[],const PetscScalar[],Mat*); 227 228 PETSC_EXTERN PetscErrorCode MatCreateMPIAdj(MPI_Comm,PetscInt,PetscInt,PetscInt[],PetscInt[],PetscInt[],Mat*); 229 PETSC_EXTERN PetscErrorCode MatCreateSeqSBAIJ(MPI_Comm,PetscInt,PetscInt,PetscInt,PetscInt,const PetscInt[],Mat*); 230 231 PETSC_EXTERN PetscErrorCode MatCreateSBAIJ(MPI_Comm,PetscInt,PetscInt,PetscInt,PetscInt,PetscInt,PetscInt,const PetscInt[],PetscInt,const PetscInt[],Mat*); 232 PETSC_EXTERN PetscErrorCode MatCreateMPISBAIJWithArrays(MPI_Comm,PetscInt,PetscInt,PetscInt,PetscInt,PetscInt,const PetscInt[],const PetscInt[],const PetscScalar[],Mat *); 233 PETSC_EXTERN PetscErrorCode MatSeqSBAIJSetPreallocationCSR(Mat,PetscInt,const PetscInt[],const PetscInt[],const PetscScalar[]); 234 PETSC_EXTERN PetscErrorCode MatMPISBAIJSetPreallocationCSR(Mat,PetscInt,const PetscInt[],const PetscInt[],const PetscScalar[]); 235 PETSC_EXTERN PetscErrorCode MatXAIJSetPreallocation(Mat,PetscInt,const PetscInt[],const PetscInt[],const PetscInt[],const PetscInt[]); 236 237 PETSC_EXTERN PetscErrorCode MatCreateShell(MPI_Comm,PetscInt,PetscInt,PetscInt,PetscInt,void *,Mat*); 238 PETSC_EXTERN PetscErrorCode MatCreateNormal(Mat,Mat*); 239 PETSC_EXTERN PetscErrorCode MatCreateNormalHermitian(Mat,Mat*); 240 PETSC_EXTERN PetscErrorCode MatCreateLRC(Mat,Mat,Vec,Mat,Mat*); 241 PETSC_EXTERN PetscErrorCode MatLRCGetMats(Mat,Mat*,Mat*,Vec*,Mat*); 242 PETSC_EXTERN PetscErrorCode MatCreateIS(MPI_Comm,PetscInt,PetscInt,PetscInt,PetscInt,PetscInt,ISLocalToGlobalMapping,ISLocalToGlobalMapping,Mat*); 243 PETSC_EXTERN PetscErrorCode MatCreateSeqAIJCRL(MPI_Comm,PetscInt,PetscInt,PetscInt,const PetscInt[],Mat*); 244 PETSC_EXTERN PetscErrorCode MatCreateMPIAIJCRL(MPI_Comm,PetscInt,PetscInt,PetscInt,const PetscInt[],PetscInt,const PetscInt[],Mat*); 245 246 PETSC_EXTERN PetscErrorCode MatCreateScatter(MPI_Comm,VecScatter,Mat*); 247 PETSC_EXTERN PetscErrorCode MatScatterSetVecScatter(Mat,VecScatter); 248 PETSC_EXTERN PetscErrorCode MatScatterGetVecScatter(Mat,VecScatter*); 249 PETSC_EXTERN PetscErrorCode MatCreateBlockMat(MPI_Comm,PetscInt,PetscInt,PetscInt,PetscInt,PetscInt*,Mat*); 250 PETSC_EXTERN PetscErrorCode MatCompositeAddMat(Mat,Mat); 251 PETSC_EXTERN PetscErrorCode MatCompositeMerge(Mat); 252 PETSC_EXTERN PetscErrorCode MatCreateComposite(MPI_Comm,PetscInt,const Mat*,Mat*); 253 typedef enum {MAT_COMPOSITE_ADDITIVE,MAT_COMPOSITE_MULTIPLICATIVE} MatCompositeType; 254 PETSC_EXTERN PetscErrorCode MatCompositeSetType(Mat,MatCompositeType); 255 256 PETSC_EXTERN PetscErrorCode MatCreateFFT(MPI_Comm,PetscInt,const PetscInt[],MatType,Mat*); 257 PETSC_EXTERN PetscErrorCode MatCreateSeqCUFFT(MPI_Comm,PetscInt,const PetscInt[],Mat*); 258 259 PETSC_EXTERN PetscErrorCode MatCreateTranspose(Mat,Mat*); 260 PETSC_EXTERN PetscErrorCode MatTransposeGetMat(Mat,Mat*); 261 PETSC_EXTERN PetscErrorCode MatCreateHermitianTranspose(Mat,Mat*); 262 PETSC_EXTERN PetscErrorCode MatCreateSubMatrixVirtual(Mat,IS,IS,Mat*); 263 PETSC_EXTERN PetscErrorCode MatSubMatrixVirtualUpdate(Mat,Mat,IS,IS); 264 PETSC_EXTERN PetscErrorCode MatCreateLocalRef(Mat,IS,IS,Mat*); 265 266 #if defined(PETSC_HAVE_HYPRE) 267 PETSC_EXTERN PetscErrorCode MatHYPRESetPreallocation(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[]); 268 #endif 269 270 PETSC_EXTERN PetscErrorCode MatPythonSetType(Mat,const char[]); 271 272 PETSC_EXTERN PetscErrorCode MatResetPreallocation(Mat); 273 PETSC_EXTERN PetscErrorCode MatSetUp(Mat); 274 PETSC_EXTERN PetscErrorCode MatDestroy(Mat*); 275 PETSC_EXTERN PetscErrorCode MatGetNonzeroState(Mat,PetscObjectState*); 276 277 PETSC_EXTERN PetscErrorCode MatConjugate(Mat); 278 PETSC_EXTERN PetscErrorCode MatRealPart(Mat); 279 PETSC_EXTERN PetscErrorCode MatImaginaryPart(Mat); 280 PETSC_EXTERN PetscErrorCode MatGetDiagonalBlock(Mat,Mat*); 281 PETSC_EXTERN PetscErrorCode MatGetTrace(Mat,PetscScalar*); 282 PETSC_EXTERN PetscErrorCode MatInvertBlockDiagonal(Mat,const PetscScalar **); 283 PETSC_EXTERN PetscErrorCode MatInvertBlockDiagonalMat(Mat,Mat); 284 285 /* ------------------------------------------------------------*/ 286 PETSC_EXTERN PetscErrorCode MatSetValues(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode); 287 PETSC_EXTERN PetscErrorCode MatSetValuesBlocked(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode); 288 PETSC_EXTERN PetscErrorCode MatSetValuesRow(Mat,PetscInt,const PetscScalar[]); 289 PETSC_EXTERN PetscErrorCode MatSetValuesRowLocal(Mat,PetscInt,const PetscScalar[]); 290 PETSC_EXTERN PetscErrorCode MatSetValuesBatch(Mat,PetscInt,PetscInt,PetscInt[],const PetscScalar[]); 291 PETSC_EXTERN PetscErrorCode MatSetRandom(Mat,PetscRandom); 292 293 /*S 294 MatStencil - Data structure (C struct) for storing information about a single row or 295 column of a matrix as indexed on an associated grid. These are arguments to MatSetStencil() and MatSetBlockStencil() 296 297 The i,j, and k represent the logical coordinates over the entire grid (for 2 and 1 dimensional problems the k and j entries are ignored). 298 The c represents the the degrees of freedom at each grid point (the dof argument to DMDASetDOF()). If dof is 1 then this entry is ignored. 299 300 For stencil access to vectors see DMDAVecGetArray(), DMDAVecGetArrayF90(). 301 302 Fortran usage is different, see MatSetValuesStencil() for details. 303 304 Level: beginner 305 306 Concepts: matrix; linear operator 307 308 .seealso: MatSetValuesStencil(), MatSetStencil(), MatSetValuesBlockedStencil(), DMDAVecGetArray(), DMDAVecGetArrayF90() 309 S*/ 310 typedef struct { 311 PetscInt k,j,i,c; 312 } MatStencil; 313 314 PETSC_EXTERN PetscErrorCode MatSetValuesStencil(Mat,PetscInt,const MatStencil[],PetscInt,const MatStencil[],const PetscScalar[],InsertMode); 315 PETSC_EXTERN PetscErrorCode MatSetValuesBlockedStencil(Mat,PetscInt,const MatStencil[],PetscInt,const MatStencil[],const PetscScalar[],InsertMode); 316 PETSC_EXTERN PetscErrorCode MatSetStencil(Mat,PetscInt,const PetscInt[],const PetscInt[],PetscInt); 317 318 /*E 319 MatAssemblyType - Indicates if the matrix is now to be used, or if you plan 320 to continue to add or insert values to it 321 322 Level: beginner 323 324 .seealso: MatAssemblyBegin(), MatAssemblyEnd() 325 E*/ 326 typedef enum {MAT_FLUSH_ASSEMBLY=1,MAT_FINAL_ASSEMBLY=0} MatAssemblyType; 327 PETSC_EXTERN PetscErrorCode MatAssemblyBegin(Mat,MatAssemblyType); 328 PETSC_EXTERN PetscErrorCode MatAssemblyEnd(Mat,MatAssemblyType); 329 PETSC_EXTERN PetscErrorCode MatAssembled(Mat,PetscBool *); 330 331 332 333 /*E 334 MatOption - Options that may be set for a matrix and its behavior or storage 335 336 Level: beginner 337 338 Any additions/changes here MUST also be made in include/petsc/finclude/petscmat.h 339 Any additions/changes here must also be made in src/mat/interface/dlregismat.c in MatOptions[] 340 341 Developer Notes: Entries that are negative need not be called collectively by all processes. 342 343 .seealso: MatSetOption() 344 E*/ 345 typedef enum {MAT_OPTION_MIN = -3, 346 MAT_UNUSED_NONZERO_LOCATION_ERR = -2, 347 MAT_ROW_ORIENTED = -1, 348 MAT_SYMMETRIC = 1, 349 MAT_STRUCTURALLY_SYMMETRIC = 2, 350 MAT_NEW_DIAGONALS = 3, 351 MAT_IGNORE_OFF_PROC_ENTRIES = 4, 352 MAT_USE_HASH_TABLE = 5, 353 MAT_KEEP_NONZERO_PATTERN = 6, 354 MAT_IGNORE_ZERO_ENTRIES = 7, 355 MAT_USE_INODES = 8, 356 MAT_HERMITIAN = 9, 357 MAT_SYMMETRY_ETERNAL = 10, 358 MAT_NEW_NONZERO_LOCATION_ERR = 11, 359 MAT_IGNORE_LOWER_TRIANGULAR = 12, 360 MAT_ERROR_LOWER_TRIANGULAR = 13, 361 MAT_GETROW_UPPERTRIANGULAR = 14, 362 MAT_SPD = 15, 363 MAT_NO_OFF_PROC_ZERO_ROWS = 16, 364 MAT_NO_OFF_PROC_ENTRIES = 17, 365 MAT_NEW_NONZERO_LOCATIONS = 18, 366 MAT_NEW_NONZERO_ALLOCATION_ERR = 19, 367 MAT_SUBSET_OFF_PROC_ENTRIES = 20, 368 MAT_SUBMAT_SINGLEIS = 21, 369 MAT_STRUCTURE_ONLY = 22, 370 MAT_OPTION_MAX = 23} MatOption; 371 372 PETSC_EXTERN const char *const *MatOptions; 373 PETSC_EXTERN PetscErrorCode MatSetOption(Mat,MatOption,PetscBool); 374 PETSC_EXTERN PetscErrorCode MatGetOption(Mat,MatOption,PetscBool*); 375 PETSC_EXTERN PetscErrorCode MatGetType(Mat,MatType*); 376 377 PETSC_EXTERN PetscErrorCode MatGetValues(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],PetscScalar[]); 378 PETSC_EXTERN PetscErrorCode MatGetRow(Mat,PetscInt,PetscInt *,const PetscInt *[],const PetscScalar*[]); 379 PETSC_EXTERN PetscErrorCode MatRestoreRow(Mat,PetscInt,PetscInt *,const PetscInt *[],const PetscScalar*[]); 380 PETSC_EXTERN PetscErrorCode MatGetRowUpperTriangular(Mat); 381 PETSC_EXTERN PetscErrorCode MatRestoreRowUpperTriangular(Mat); 382 PETSC_EXTERN PetscErrorCode MatGetColumnVector(Mat,Vec,PetscInt); 383 PETSC_EXTERN PetscErrorCode MatSeqAIJGetArray(Mat,PetscScalar *[]); 384 PETSC_EXTERN PetscErrorCode MatSeqAIJRestoreArray(Mat,PetscScalar *[]); 385 PETSC_EXTERN PetscErrorCode MatSeqAIJGetMaxRowNonzeros(Mat,PetscInt*); 386 PETSC_EXTERN PetscErrorCode MatSeqAIJSetValuesLocalFast(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode); 387 PETSC_EXTERN PetscErrorCode MatSeqAIJSetType(Mat,MatType); 388 PETSC_EXTERN PetscErrorCode MatSeqAIJRegister(const char[],PetscErrorCode (*)(Mat,MatType,MatReuse,Mat *)); 389 PETSC_EXTERN PetscFunctionList MatSeqAIJList; 390 PETSC_EXTERN PetscErrorCode MatSeqSBAIJGetArray(Mat,PetscScalar *[]); 391 PETSC_EXTERN PetscErrorCode MatSeqSBAIJRestoreArray(Mat,PetscScalar *[]); 392 PETSC_EXTERN PetscErrorCode MatDenseGetArray(Mat,PetscScalar *[]); 393 PETSC_EXTERN PetscErrorCode MatDenseRestoreArray(Mat,PetscScalar *[]); 394 PETSC_EXTERN PetscErrorCode MatDensePlaceArray(Mat,const PetscScalar[]); 395 PETSC_EXTERN PetscErrorCode MatDenseResetArray(Mat); 396 PETSC_EXTERN PetscErrorCode MatDenseGetArrayRead(Mat,const PetscScalar *[]); 397 PETSC_EXTERN PetscErrorCode MatDenseRestoreArrayRead(Mat,const PetscScalar *[]); 398 PETSC_EXTERN PetscErrorCode MatGetBlockSize(Mat,PetscInt *); 399 PETSC_EXTERN PetscErrorCode MatSetBlockSize(Mat,PetscInt); 400 PETSC_EXTERN PetscErrorCode MatGetBlockSizes(Mat,PetscInt *,PetscInt *); 401 PETSC_EXTERN PetscErrorCode MatSetBlockSizes(Mat,PetscInt,PetscInt); 402 PETSC_EXTERN PetscErrorCode MatSetBlockSizesFromMats(Mat,Mat,Mat); 403 PETSC_EXTERN PetscErrorCode MatDenseGetColumn(Mat,PetscInt,PetscScalar *[]); 404 PETSC_EXTERN PetscErrorCode MatDenseRestoreColumn(Mat,PetscScalar *[]); 405 406 PETSC_EXTERN PetscErrorCode MatMult(Mat,Vec,Vec); 407 PETSC_EXTERN PetscErrorCode MatMultDiagonalBlock(Mat,Vec,Vec); 408 PETSC_EXTERN PetscErrorCode MatMultAdd(Mat,Vec,Vec,Vec); 409 PETSC_EXTERN PetscErrorCode MatMultTranspose(Mat,Vec,Vec); 410 PETSC_EXTERN PetscErrorCode MatMultHermitianTranspose(Mat,Vec,Vec); 411 PETSC_EXTERN PetscErrorCode MatIsTranspose(Mat,Mat,PetscReal,PetscBool *); 412 PETSC_EXTERN PetscErrorCode MatIsHermitianTranspose(Mat,Mat,PetscReal,PetscBool *); 413 PETSC_EXTERN PetscErrorCode MatMultTransposeAdd(Mat,Vec,Vec,Vec); 414 PETSC_EXTERN PetscErrorCode MatMultHermitianTransposeAdd(Mat,Vec,Vec,Vec); 415 PETSC_EXTERN PetscErrorCode MatMultConstrained(Mat,Vec,Vec); 416 PETSC_EXTERN PetscErrorCode MatMultTransposeConstrained(Mat,Vec,Vec); 417 PETSC_EXTERN PetscErrorCode MatMatSolve(Mat,Mat,Mat); 418 PETSC_EXTERN PetscErrorCode MatMatSolveTranspose(Mat,Mat,Mat); 419 PETSC_EXTERN PetscErrorCode MatResidual(Mat,Vec,Vec,Vec); 420 421 /*E 422 MatDuplicateOption - Indicates if a duplicated sparse matrix should have 423 its numerical values copied over or just its nonzero structure. 424 425 Level: beginner 426 427 Any additions/changes here MUST also be made in include/petsc/finclude/petscmat.h 428 429 $ MAT_DO_NOT_COPY_VALUES - Create a matrix using the same nonzero pattern as the original matrix, 430 $ with zeros for the numerical values. 431 $ MAT_COPY_VALUES - Create a matrix with the same nonzero pattern as the original matrix 432 $ and with the same numerical values. 433 $ MAT_SHARE_NONZERO_PATTERN - Create a matrix that shares the nonzero structure with the previous matrix 434 $ and does not copy it, using zeros for the numerical values. The parent and 435 $ child matrices will share their index (i and j) arrays, and you cannot 436 $ insert new nonzero entries into either matrix. 437 438 Notes: Many matrix types (including SeqAIJ) do not support the MAT_SHARE_NONZERO_PATTERN optimization; in 439 this case the behavior is as if MAT_DO_NOT_COPY_VALUES has been specified. 440 441 .seealso: MatDuplicate() 442 E*/ 443 typedef enum {MAT_DO_NOT_COPY_VALUES,MAT_COPY_VALUES,MAT_SHARE_NONZERO_PATTERN} MatDuplicateOption; 444 445 PETSC_EXTERN PetscErrorCode MatConvert(Mat,MatType,MatReuse,Mat*); 446 PETSC_EXTERN PetscErrorCode MatDuplicate(Mat,MatDuplicateOption,Mat*); 447 448 449 PETSC_EXTERN PetscErrorCode MatCopy(Mat,Mat,MatStructure); 450 PETSC_EXTERN PetscErrorCode MatView(Mat,PetscViewer); 451 PETSC_EXTERN PetscErrorCode MatIsSymmetric(Mat,PetscReal,PetscBool *); 452 PETSC_EXTERN PetscErrorCode MatIsStructurallySymmetric(Mat,PetscBool *); 453 PETSC_EXTERN PetscErrorCode MatIsHermitian(Mat,PetscReal,PetscBool *); 454 PETSC_EXTERN PetscErrorCode MatIsSymmetricKnown(Mat,PetscBool *,PetscBool *); 455 PETSC_EXTERN PetscErrorCode MatIsHermitianKnown(Mat,PetscBool *,PetscBool *); 456 PETSC_EXTERN PetscErrorCode MatMissingDiagonal(Mat,PetscBool *,PetscInt *); 457 PETSC_EXTERN PetscErrorCode MatLoad(Mat, PetscViewer); 458 459 PETSC_EXTERN PetscErrorCode MatGetRowIJ(Mat,PetscInt,PetscBool ,PetscBool ,PetscInt*,const PetscInt *[],const PetscInt *[],PetscBool *); 460 PETSC_EXTERN PetscErrorCode MatRestoreRowIJ(Mat,PetscInt,PetscBool ,PetscBool ,PetscInt *,const PetscInt *[],const PetscInt *[],PetscBool *); 461 PETSC_EXTERN PetscErrorCode MatGetColumnIJ(Mat,PetscInt,PetscBool ,PetscBool ,PetscInt*,const PetscInt *[],const PetscInt *[],PetscBool *); 462 PETSC_EXTERN PetscErrorCode MatRestoreColumnIJ(Mat,PetscInt,PetscBool ,PetscBool ,PetscInt *,const PetscInt *[],const PetscInt *[],PetscBool *); 463 464 /*S 465 MatInfo - Context of matrix information, used with MatGetInfo() 466 467 In Fortran this is simply a double precision array of dimension MAT_INFO_SIZE 468 469 Level: intermediate 470 471 Concepts: matrix^nonzero information 472 473 .seealso: MatGetInfo(), MatInfoType 474 S*/ 475 typedef struct { 476 PetscLogDouble block_size; /* block size */ 477 PetscLogDouble nz_allocated,nz_used,nz_unneeded; /* number of nonzeros */ 478 PetscLogDouble memory; /* memory allocated */ 479 PetscLogDouble assemblies; /* number of matrix assemblies called */ 480 PetscLogDouble mallocs; /* number of mallocs during MatSetValues() */ 481 PetscLogDouble fill_ratio_given,fill_ratio_needed; /* fill ratio for LU/ILU */ 482 PetscLogDouble factor_mallocs; /* number of mallocs during factorization */ 483 } MatInfo; 484 485 /*E 486 MatInfoType - Indicates if you want information about the local part of the matrix, 487 the entire parallel matrix or the maximum over all the local parts. 488 489 Level: beginner 490 491 Any additions/changes here MUST also be made in include/petsc/finclude/petscmat.h 492 493 .seealso: MatGetInfo(), MatInfo 494 E*/ 495 typedef enum {MAT_LOCAL=1,MAT_GLOBAL_MAX=2,MAT_GLOBAL_SUM=3} MatInfoType; 496 PETSC_EXTERN PetscErrorCode MatGetInfo(Mat,MatInfoType,MatInfo*); 497 PETSC_EXTERN PetscErrorCode MatGetDiagonal(Mat,Vec); 498 PETSC_EXTERN PetscErrorCode MatGetRowMax(Mat,Vec,PetscInt[]); 499 PETSC_EXTERN PetscErrorCode MatGetRowMin(Mat,Vec,PetscInt[]); 500 PETSC_EXTERN PetscErrorCode MatGetRowMaxAbs(Mat,Vec,PetscInt[]); 501 PETSC_EXTERN PetscErrorCode MatGetRowMinAbs(Mat,Vec,PetscInt[]); 502 PETSC_EXTERN PetscErrorCode MatGetRowSum(Mat,Vec); 503 PETSC_EXTERN PetscErrorCode MatTranspose(Mat,MatReuse,Mat*); 504 PETSC_EXTERN PetscErrorCode MatHermitianTranspose(Mat,MatReuse,Mat*); 505 PETSC_EXTERN PetscErrorCode MatPermute(Mat,IS,IS,Mat*); 506 PETSC_EXTERN PetscErrorCode MatDiagonalScale(Mat,Vec,Vec); 507 PETSC_EXTERN PetscErrorCode MatDiagonalSet(Mat,Vec,InsertMode); 508 509 PETSC_EXTERN PetscErrorCode MatEqual(Mat,Mat,PetscBool*); 510 PETSC_EXTERN PetscErrorCode MatMultEqual(Mat,Mat,PetscInt,PetscBool*); 511 PETSC_EXTERN PetscErrorCode MatMultAddEqual(Mat,Mat,PetscInt,PetscBool*); 512 PETSC_EXTERN PetscErrorCode MatMultTransposeEqual(Mat,Mat,PetscInt,PetscBool*); 513 PETSC_EXTERN PetscErrorCode MatMultTransposeAddEqual(Mat,Mat,PetscInt,PetscBool*); 514 PETSC_EXTERN PetscErrorCode MatMatMultEqual(Mat,Mat,Mat,PetscInt,PetscBool*); 515 PETSC_EXTERN PetscErrorCode MatTransposeMatMultEqual(Mat,Mat,Mat,PetscInt,PetscBool*); 516 517 PETSC_EXTERN PetscErrorCode MatNorm(Mat,NormType,PetscReal*); 518 PETSC_EXTERN PetscErrorCode MatGetColumnNorms(Mat,NormType,PetscReal*); 519 PETSC_EXTERN PetscErrorCode MatZeroEntries(Mat); 520 PETSC_EXTERN PetscErrorCode MatZeroRows(Mat,PetscInt,const PetscInt [],PetscScalar,Vec,Vec); 521 PETSC_EXTERN PetscErrorCode MatZeroRowsIS(Mat,IS,PetscScalar,Vec,Vec); 522 PETSC_EXTERN PetscErrorCode MatZeroRowsStencil(Mat,PetscInt,const MatStencil [],PetscScalar,Vec,Vec); 523 PETSC_EXTERN PetscErrorCode MatZeroRowsColumnsStencil(Mat,PetscInt,const MatStencil[],PetscScalar,Vec,Vec); 524 PETSC_EXTERN PetscErrorCode MatZeroRowsColumns(Mat,PetscInt,const PetscInt [],PetscScalar,Vec,Vec); 525 PETSC_EXTERN PetscErrorCode MatZeroRowsColumnsIS(Mat,IS,PetscScalar,Vec,Vec); 526 527 PETSC_EXTERN PetscErrorCode MatGetSize(Mat,PetscInt*,PetscInt*); 528 PETSC_EXTERN PetscErrorCode MatGetLocalSize(Mat,PetscInt*,PetscInt*); 529 PETSC_EXTERN PetscErrorCode MatGetOwnershipRange(Mat,PetscInt*,PetscInt*); 530 PETSC_EXTERN PetscErrorCode MatGetOwnershipRanges(Mat,const PetscInt**); 531 PETSC_EXTERN PetscErrorCode MatGetOwnershipRangeColumn(Mat,PetscInt*,PetscInt*); 532 PETSC_EXTERN PetscErrorCode MatGetOwnershipRangesColumn(Mat,const PetscInt**); 533 PETSC_EXTERN PetscErrorCode MatGetOwnershipIS(Mat,IS*,IS*); 534 535 PETSC_EXTERN PetscErrorCode MatCreateSubMatrices(Mat,PetscInt,const IS[],const IS[],MatReuse,Mat *[]); 536 PETSC_DEPRECATED("Use MatCreateSubMatrices()") PETSC_STATIC_INLINE PetscErrorCode MatGetSubMatrices(Mat mat,PetscInt n,const IS irow[],const IS icol[],MatReuse scall,Mat *submat[]) {return MatCreateSubMatrices(mat,n,irow,icol,scall,submat);} 537 PETSC_EXTERN PetscErrorCode MatCreateSubMatricesMPI(Mat,PetscInt,const IS[],const IS[],MatReuse,Mat *[]); 538 PETSC_DEPRECATED("Use MatCreateSubMatricesMPI()") PETSC_STATIC_INLINE PetscErrorCode MatGetSubMatricesMPI(Mat mat,PetscInt n,const IS irow[],const IS icol[],MatReuse scall,Mat *submat[]) {return MatCreateSubMatricesMPI(mat,n,irow,icol,scall,submat);} 539 PETSC_EXTERN PetscErrorCode MatDestroyMatrices(PetscInt,Mat *[]); 540 PETSC_EXTERN PetscErrorCode MatDestroySubMatrices(PetscInt,Mat *[]); 541 PETSC_EXTERN PetscErrorCode MatCreateSubMatrix(Mat,IS,IS,MatReuse,Mat *); 542 PETSC_DEPRECATED("Use MatCreateSubMatrix()") PETSC_STATIC_INLINE PetscErrorCode MatGetSubMatrix(Mat mat,IS isrow,IS iscol,MatReuse cll,Mat *newmat) {return MatCreateSubMatrix(mat,isrow,iscol,cll,newmat);} 543 PETSC_EXTERN PetscErrorCode MatGetLocalSubMatrix(Mat,IS,IS,Mat*); 544 PETSC_EXTERN PetscErrorCode MatRestoreLocalSubMatrix(Mat,IS,IS,Mat*); 545 PETSC_EXTERN PetscErrorCode MatGetSeqNonzeroStructure(Mat,Mat*); 546 PETSC_EXTERN PetscErrorCode MatDestroySeqNonzeroStructure(Mat*); 547 548 PETSC_EXTERN PetscErrorCode MatCreateMPIAIJSumSeqAIJ(MPI_Comm,Mat,PetscInt,PetscInt,MatReuse,Mat*); 549 PETSC_EXTERN PetscErrorCode MatCreateMPIAIJSumSeqAIJSymbolic(MPI_Comm,Mat,PetscInt,PetscInt,Mat*); 550 PETSC_EXTERN PetscErrorCode MatCreateMPIAIJSumSeqAIJNumeric(Mat,Mat); 551 PETSC_EXTERN PetscErrorCode MatMPIAIJGetLocalMat(Mat,MatReuse,Mat*); 552 PETSC_EXTERN PetscErrorCode MatMPIAIJGetLocalMatCondensed(Mat,MatReuse,IS*,IS*,Mat*); 553 PETSC_EXTERN PetscErrorCode MatGetBrowsOfAcols(Mat,Mat,MatReuse,IS*,IS*,Mat*); 554 PETSC_EXTERN PetscErrorCode MatGetGhosts(Mat, PetscInt *,const PetscInt *[]); 555 556 PETSC_EXTERN PetscErrorCode MatIncreaseOverlap(Mat,PetscInt,IS[],PetscInt); 557 PETSC_EXTERN PetscErrorCode MatIncreaseOverlapSplit(Mat mat,PetscInt n,IS is[],PetscInt ov); 558 PETSC_EXTERN PetscErrorCode MatMPIAIJSetUseScalableIncreaseOverlap(Mat,PetscBool); 559 560 PETSC_EXTERN PetscErrorCode MatMatMult(Mat,Mat,MatReuse,PetscReal,Mat*); 561 PETSC_EXTERN PetscErrorCode MatMatMultSymbolic(Mat,Mat,PetscReal,Mat*); 562 PETSC_EXTERN PetscErrorCode MatMatMultNumeric(Mat,Mat,Mat); 563 564 PETSC_EXTERN PetscErrorCode MatMatMatMult(Mat,Mat,Mat,MatReuse,PetscReal,Mat*); 565 PETSC_EXTERN PetscErrorCode MatGalerkin(Mat,Mat,Mat,MatReuse,PetscReal,Mat*); 566 567 PETSC_EXTERN PetscErrorCode MatPtAP(Mat,Mat,MatReuse,PetscReal,Mat*); 568 PETSC_EXTERN PetscErrorCode MatPtAPSymbolic(Mat,Mat,PetscReal,Mat*); 569 PETSC_EXTERN PetscErrorCode MatPtAPNumeric(Mat,Mat,Mat); 570 PETSC_EXTERN PetscErrorCode MatRARt(Mat,Mat,MatReuse,PetscReal,Mat*); 571 PETSC_EXTERN PetscErrorCode MatRARtSymbolic(Mat,Mat,PetscReal,Mat*); 572 PETSC_EXTERN PetscErrorCode MatRARtNumeric(Mat,Mat,Mat); 573 574 PETSC_EXTERN PetscErrorCode MatTransposeMatMult(Mat,Mat,MatReuse,PetscReal,Mat*); 575 PETSC_EXTERN PetscErrorCode MatTransposetMatMultSymbolic(Mat,Mat,PetscReal,Mat*); 576 PETSC_EXTERN PetscErrorCode MatTransposetMatMultNumeric(Mat,Mat,Mat); 577 PETSC_EXTERN PetscErrorCode MatMatTransposeMult(Mat,Mat,MatReuse,PetscReal,Mat*); 578 PETSC_EXTERN PetscErrorCode MatMatTransposeMultSymbolic(Mat,Mat,PetscReal,Mat*); 579 PETSC_EXTERN PetscErrorCode MatMatTransposeMultNumeric(Mat,Mat,Mat); 580 581 PETSC_EXTERN PetscErrorCode MatAXPY(Mat,PetscScalar,Mat,MatStructure); 582 PETSC_EXTERN PetscErrorCode MatAYPX(Mat,PetscScalar,Mat,MatStructure); 583 584 PETSC_EXTERN PetscErrorCode MatScale(Mat,PetscScalar); 585 PETSC_EXTERN PetscErrorCode MatShift(Mat,PetscScalar); 586 587 PETSC_EXTERN PetscErrorCode MatSetLocalToGlobalMapping(Mat,ISLocalToGlobalMapping,ISLocalToGlobalMapping); 588 PETSC_EXTERN PetscErrorCode MatGetLocalToGlobalMapping(Mat,ISLocalToGlobalMapping*,ISLocalToGlobalMapping*); 589 PETSC_EXTERN PetscErrorCode MatGetLayouts(Mat,PetscLayout*,PetscLayout*); 590 PETSC_EXTERN PetscErrorCode MatZeroRowsLocal(Mat,PetscInt,const PetscInt [],PetscScalar,Vec,Vec); 591 PETSC_EXTERN PetscErrorCode MatZeroRowsLocalIS(Mat,IS,PetscScalar,Vec,Vec); 592 PETSC_EXTERN PetscErrorCode MatZeroRowsColumnsLocal(Mat,PetscInt,const PetscInt [],PetscScalar,Vec,Vec); 593 PETSC_EXTERN PetscErrorCode MatZeroRowsColumnsLocalIS(Mat,IS,PetscScalar,Vec,Vec); 594 PETSC_EXTERN PetscErrorCode MatSetValuesLocal(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode); 595 PETSC_EXTERN PetscErrorCode MatSetValuesBlockedLocal(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode); 596 597 PETSC_EXTERN PetscErrorCode MatStashSetInitialSize(Mat,PetscInt,PetscInt); 598 PETSC_EXTERN PetscErrorCode MatStashGetInfo(Mat,PetscInt*,PetscInt*,PetscInt*,PetscInt*); 599 600 PETSC_EXTERN PetscErrorCode MatInterpolate(Mat,Vec,Vec); 601 PETSC_EXTERN PetscErrorCode MatInterpolateAdd(Mat,Vec,Vec,Vec); 602 PETSC_EXTERN PetscErrorCode MatRestrict(Mat,Vec,Vec); 603 PETSC_EXTERN PetscErrorCode MatCreateVecs(Mat,Vec*,Vec*); 604 PETSC_DEPRECATED("Use MatCreateVecs()") PETSC_STATIC_INLINE PetscErrorCode MatGetVecs(Mat mat,Vec *x,Vec *y) {return MatCreateVecs(mat,x,y);} 605 PETSC_EXTERN PetscErrorCode MatCreateRedundantMatrix(Mat,PetscInt,MPI_Comm,MatReuse,Mat*); 606 PETSC_EXTERN PetscErrorCode MatGetMultiProcBlock(Mat,MPI_Comm,MatReuse,Mat*); 607 PETSC_EXTERN PetscErrorCode MatFindZeroDiagonals(Mat,IS*); 608 PETSC_EXTERN PetscErrorCode MatFindOffBlockDiagonalEntries(Mat,IS*); 609 PETSC_EXTERN PetscErrorCode MatCreateMPIMatConcatenateSeqMat(MPI_Comm,Mat,PetscInt,MatReuse,Mat*); 610 611 /*MC 612 MatSetValue - Set a single entry into a matrix. 613 614 Not collective 615 616 Synopsis: 617 #include <petscmat.h> 618 PetscErrorCode MatSetValue(Mat m,PetscInt row,PetscInt col,PetscScalar value,InsertMode mode) 619 620 Input Parameters: 621 + m - the matrix 622 . row - the row location of the entry 623 . col - the column location of the entry 624 . value - the value to insert 625 - mode - either INSERT_VALUES or ADD_VALUES 626 627 Notes: 628 For efficiency one should use MatSetValues() and set several or many 629 values simultaneously if possible. 630 631 Level: beginner 632 633 .seealso: MatSetValues(), MatSetValueLocal() 634 M*/ 635 PETSC_STATIC_INLINE PetscErrorCode MatSetValue(Mat v,PetscInt i,PetscInt j,PetscScalar va,InsertMode mode) {return MatSetValues(v,1,&i,1,&j,&va,mode);} 636 637 PETSC_STATIC_INLINE PetscErrorCode MatGetValue(Mat v,PetscInt i,PetscInt j,PetscScalar *va) {return MatGetValues(v,1,&i,1,&j,va);} 638 639 PETSC_STATIC_INLINE PetscErrorCode MatSetValueLocal(Mat v,PetscInt i,PetscInt j,PetscScalar va,InsertMode mode) {return MatSetValuesLocal(v,1,&i,1,&j,&va,mode);} 640 641 /*MC 642 MatPreallocateInitialize - Begins the block of code that will count the number of nonzeros per 643 row in a matrix providing the data that one can use to correctly preallocate the matrix. 644 645 Synopsis: 646 #include <petscmat.h> 647 PetscErrorCode MatPreallocateInitialize(MPI_Comm comm, PetscInt nrows, PetscInt ncols, PetscInt *dnz, PetscInt *onz) 648 649 Collective on MPI_Comm 650 651 Input Parameters: 652 + comm - the communicator that will share the eventually allocated matrix 653 . nrows - the number of LOCAL rows in the matrix 654 - ncols - the number of LOCAL columns in the matrix 655 656 Output Parameters: 657 + dnz - the array that will be passed to the matrix preallocation routines 658 - ozn - the other array passed to the matrix preallocation routines 659 660 Level: intermediate 661 662 Notes: 663 See Users-Manual: ch_performance for more details. 664 665 Do not malloc or free dnz and onz, that is handled internally by these routines 666 667 Use MatPreallocateInitializeSymmetric() for symmetric matrices (MPISBAIJ matrices) 668 669 This is a MACRO not a function because it has a leading { that is closed by PetscPreallocateFinalize(). 670 671 Concepts: preallocation^Matrix 672 673 .seealso: MatPreallocateFinalize(), MatPreallocateSet(), MatPreallocateSymmetricSetBlock(), MatPreallocateSetLocal(), 674 MatPreallocateInitializeSymmetric(), MatPreallocateSymmetricSetLocalBlock() 675 M*/ 676 #define MatPreallocateInitialize(comm,nrows,ncols,dnz,onz) 0; \ 677 { \ 678 PetscErrorCode _4_ierr; PetscInt __nrows = (nrows),__ctmp = (ncols),__rstart,__start,__end; \ 679 _4_ierr = PetscCalloc2((size_t)__nrows,&dnz,(size_t)__nrows,&onz);CHKERRQ(_4_ierr); \ 680 __start = 0; __end = __start; \ 681 _4_ierr = MPI_Scan(&__ctmp,&__end,1,MPIU_INT,MPI_SUM,comm);CHKERRQ(_4_ierr); __start = __end - __ctmp;\ 682 _4_ierr = MPI_Scan(&__nrows,&__rstart,1,MPIU_INT,MPI_SUM,comm);CHKERRQ(_4_ierr); __rstart = __rstart - __nrows; 683 684 /*MC 685 MatPreallocateSetLocal - Indicates the locations (rows and columns) in the matrix where nonzeros will be 686 inserted using a local number of the rows and columns 687 688 Synopsis: 689 #include <petscmat.h> 690 PetscErrorCode MatPreallocateSetLocal(ISLocalToGlobalMappping map,PetscInt nrows, PetscInt *rows,PetscInt ncols, PetscInt *cols,PetscInt *dnz, PetscInt *onz) 691 692 Not Collective 693 694 Input Parameters: 695 + map - the row mapping from local numbering to global numbering 696 . nrows - the number of rows indicated 697 . rows - the indices of the rows 698 . cmap - the column mapping from local to global numbering 699 . ncols - the number of columns in the matrix 700 . cols - the columns indicated 701 . dnz - the array that will be passed to the matrix preallocation routines 702 - ozn - the other array passed to the matrix preallocation routines 703 704 Level: intermediate 705 706 Notes: 707 See Users-Manual: ch_performance for more details. 708 709 Do not malloc or free dnz and onz, that is handled internally by these routines 710 711 Concepts: preallocation^Matrix 712 713 .seealso: MatPreallocateFinalize(), MatPreallocateSet(), MatPreallocateSymmetricSetBlock(), MatPreallocateInitialize(), 714 MatPreallocateInitialize(), MatPreallocateSymmetricSetLocalBlock(), MatPreallocateSetLocalRemoveDups() 715 M*/ 716 #define MatPreallocateSetLocal(rmap,nrows,rows,cmap,ncols,cols,dnz,onz) 0; \ 717 {\ 718 PetscInt __l;\ 719 _4_ierr = ISLocalToGlobalMappingApply(rmap,nrows,rows,rows);CHKERRQ(_4_ierr);\ 720 _4_ierr = ISLocalToGlobalMappingApply(cmap,ncols,cols,cols);CHKERRQ(_4_ierr);\ 721 for (__l=0;__l<nrows;__l++) {\ 722 _4_ierr = MatPreallocateSet((rows)[__l],ncols,cols,dnz,onz);CHKERRQ(_4_ierr);\ 723 }\ 724 } 725 726 /*MC 727 MatPreallocateSetLocalRemoveDups - Indicates the locations (rows and columns) in the matrix where nonzeros will be 728 inserted using a local number of the rows and columns. This version removes any duplicate columns in cols 729 730 Synopsis: 731 #include <petscmat.h> 732 PetscErrorCode MatPreallocateSetLocalRemoveDups(ISLocalToGlobalMappping map,PetscInt nrows, PetscInt *rows,PetscInt ncols, PetscInt *cols,PetscInt *dnz, PetscInt *onz) 733 734 Not Collective 735 736 Input Parameters: 737 + map - the row mapping from local numbering to global numbering 738 . nrows - the number of rows indicated 739 . rows - the indices of the rows (these values are mapped to the global values) 740 . cmap - the column mapping from local to global numbering 741 . ncols - the number of columns in the matrix (this value will be changed if duplicate columns are found) 742 . cols - the columns indicated (these values are mapped to the global values, they are then sorted and duplicates removed) 743 . dnz - the array that will be passed to the matrix preallocation routines 744 - ozn - the other array passed to the matrix preallocation routines 745 746 Level: intermediate 747 748 Notes: 749 See Users-Manual: ch_performance for more details. 750 751 Do not malloc or free dnz and onz, that is handled internally by these routines 752 753 Concepts: preallocation^Matrix 754 755 .seealso: MatPreallocateFinalize(), MatPreallocateSet(), MatPreallocateSymmetricSetBlock(), MatPreallocateInitialize(), 756 MatPreallocateInitialize(), MatPreallocateSymmetricSetLocalBlock(), MatPreallocateSetLocal() 757 M*/ 758 #define MatPreallocateSetLocalRemoveDups(rmap,nrows,rows,cmap,ncols,cols,dnz,onz) 0; \ 759 {\ 760 PetscInt __l;\ 761 _4_ierr = ISLocalToGlobalMappingApply(rmap,nrows,rows,rows);CHKERRQ(_4_ierr);\ 762 _4_ierr = ISLocalToGlobalMappingApply(cmap,ncols,cols,cols);CHKERRQ(_4_ierr);\ 763 _4_ierr = PetscSortRemoveDupsInt(&ncols,cols);CHKERRQ(_4_ierr);\ 764 for (__l=0;__l<nrows;__l++) {\ 765 _4_ierr = MatPreallocateSet((rows)[__l],ncols,cols,dnz,onz);CHKERRQ(_4_ierr);\ 766 }\ 767 } 768 769 /*MC 770 MatPreallocateSetLocalBlock - Indicates the locations (rows and columns) in the matrix where nonzeros will be 771 inserted using a local number of the rows and columns 772 773 Synopsis: 774 #include <petscmat.h> 775 PetscErrorCode MatPreallocateSetLocalBlock(ISLocalToGlobalMappping map,PetscInt nrows, PetscInt *rows,PetscInt ncols, PetscInt *cols,PetscInt *dnz, PetscInt *onz) 776 777 Not Collective 778 779 Input Parameters: 780 + map - the row mapping from local numbering to global numbering 781 . nrows - the number of rows indicated 782 . rows - the indices of the rows 783 . cmap - the column mapping from local to global numbering 784 . ncols - the number of columns in the matrix 785 . cols - the columns indicated 786 . dnz - the array that will be passed to the matrix preallocation routines 787 - ozn - the other array passed to the matrix preallocation routines 788 789 Level: intermediate 790 791 Notes: 792 See Users-Manual: ch_performance for more details. 793 794 Do not malloc or free dnz and onz, that is handled internally by these routines 795 796 Concepts: preallocation^Matrix 797 798 .seealso: MatPreallocateFinalize(), MatPreallocateSet(), MatPreallocateSymmetricSetBlock(), MatPreallocateInitialize(), 799 MatPreallocateInitialize(), MatPreallocateSymmetricSetLocalBlock() 800 M*/ 801 #define MatPreallocateSetLocalBlock(rmap,nrows,rows,cmap,ncols,cols,dnz,onz) 0; \ 802 {\ 803 PetscInt __l;\ 804 _4_ierr = ISLocalToGlobalMappingApplyBlock(rmap,nrows,rows,rows);CHKERRQ(_4_ierr);\ 805 _4_ierr = ISLocalToGlobalMappingApplyBlock(cmap,ncols,cols,cols);CHKERRQ(_4_ierr);\ 806 for (__l=0;__l<nrows;__l++) {\ 807 _4_ierr = MatPreallocateSet((rows)[__l],ncols,cols,dnz,onz);CHKERRQ(_4_ierr);\ 808 }\ 809 } 810 811 /*MC 812 MatPreallocateSymmetricSetLocalBlock - Indicates the locations (rows and columns) in the matrix where nonzeros will be 813 inserted using a local number of the rows and columns 814 815 Synopsis: 816 #include <petscmat.h> 817 PetscErrorCode MatPreallocateSymmetricSetLocalBlock(ISLocalToGlobalMappping map,PetscInt nrows, PetscInt *rows,PetscInt ncols, PetscInt *cols,PetscInt *dnz, PetscInt *onz) 818 819 Not Collective 820 821 Input Parameters: 822 + map - the mapping between local numbering and global numbering 823 . nrows - the number of rows indicated 824 . rows - the indices of the rows 825 . ncols - the number of columns in the matrix 826 . cols - the columns indicated 827 . dnz - the array that will be passed to the matrix preallocation routines 828 - ozn - the other array passed to the matrix preallocation routines 829 830 Level: intermediate 831 832 Notes: 833 See Users-Manual: ch_performance for more details. 834 835 Do not malloc or free dnz and onz that is handled internally by these routines 836 837 Concepts: preallocation^Matrix 838 839 .seealso: MatPreallocateFinalize(), MatPreallocateSet(), MatPreallocateInitialize(), 840 MatPreallocateInitialize(), MatPreallocateSetLocal() 841 M*/ 842 #define MatPreallocateSymmetricSetLocalBlock(map,nrows,rows,ncols,cols,dnz,onz) 0;\ 843 {\ 844 PetscInt __l;\ 845 _4_ierr = ISLocalToGlobalMappingApplyBlock(map,nrows,rows,rows);CHKERRQ(_4_ierr);\ 846 _4_ierr = ISLocalToGlobalMappingApplyBlock(map,ncols,cols,cols);CHKERRQ(_4_ierr);\ 847 for (__l=0;__l<nrows;__l++) {\ 848 _4_ierr = MatPreallocateSymmetricSetBlock((rows)[__l],ncols,cols,dnz,onz);CHKERRQ(_4_ierr);\ 849 }\ 850 } 851 /*MC 852 MatPreallocateSet - Indicates the locations (rows and columns) in the matrix where nonzeros will be 853 inserted using a local number of the rows and columns 854 855 Synopsis: 856 #include <petscmat.h> 857 PetscErrorCode MatPreallocateSet(PetscInt nrows, PetscInt *rows,PetscInt ncols, PetscInt *cols,PetscInt *dnz, PetscInt *onz) 858 859 Not Collective 860 861 Input Parameters: 862 + row - the row 863 . ncols - the number of columns in the matrix 864 - cols - the columns indicated 865 866 Output Parameters: 867 + dnz - the array that will be passed to the matrix preallocation routines 868 - ozn - the other array passed to the matrix preallocation routines 869 870 Level: intermediate 871 872 Notes: 873 See Users-Manual: ch_performance for more details. 874 875 Do not malloc or free dnz and onz that is handled internally by these routines 876 877 This is a MACRO not a function because it uses variables declared in MatPreallocateInitialize(). 878 879 Concepts: preallocation^Matrix 880 881 .seealso: MatPreallocateFinalize(), MatPreallocateSet(), MatPreallocateSymmetricSetBlock(), MatPreallocateInitialize(), 882 MatPreallocateInitialize(), MatPreallocateSetLocal() 883 M*/ 884 #define MatPreallocateSet(row,nc,cols,dnz,onz) 0;\ 885 { PetscInt __i; \ 886 if (row < __rstart) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Trying to set preallocation for row %D less than first local row %D",row,__rstart);\ 887 if (row >= __rstart+__nrows) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Trying to set preallocation for row %D greater than last local row %D",row,__rstart+__nrows-1);\ 888 for (__i=0; __i<nc; __i++) {\ 889 if ((cols)[__i] < __start || (cols)[__i] >= __end) onz[row - __rstart]++; \ 890 else dnz[row - __rstart]++;\ 891 }\ 892 } 893 894 /*MC 895 MatPreallocateSymmetricSetBlock - Indicates the locations (rows and columns) in the matrix where nonzeros will be 896 inserted using a local number of the rows and columns 897 898 Synopsis: 899 #include <petscmat.h> 900 PetscErrorCode MatPreallocateSymmetricSetBlock(PetscInt nrows, PetscInt *rows,PetscInt ncols, PetscInt *cols,PetscInt *dnz, PetscInt *onz) 901 902 Not Collective 903 904 Input Parameters: 905 + nrows - the number of rows indicated 906 . rows - the indices of the rows 907 . ncols - the number of columns in the matrix 908 . cols - the columns indicated 909 . dnz - the array that will be passed to the matrix preallocation routines 910 - ozn - the other array passed to the matrix preallocation routines 911 912 Level: intermediate 913 914 Notes: 915 See Users-Manual: ch_performance for more details. 916 917 Do not malloc or free dnz and onz that is handled internally by these routines 918 919 This is a MACRO not a function because it uses variables declared in MatPreallocateInitialize(). 920 921 Concepts: preallocation^Matrix 922 923 .seealso: MatPreallocateFinalize(), MatPreallocateSet(), MatPreallocateInitialize(), 924 MatPreallocateInitialize(), MatPreallocateSymmetricSetLocalBlock(), MatPreallocateSetLocal() 925 M*/ 926 #define MatPreallocateSymmetricSetBlock(row,nc,cols,dnz,onz) 0;\ 927 { PetscInt __i; \ 928 for (__i=0; __i<nc; __i++) {\ 929 if (cols[__i] >= __end) onz[row - __rstart]++; \ 930 else if (cols[__i] >= row) dnz[row - __rstart]++;\ 931 }\ 932 } 933 934 /*MC 935 MatPreallocateLocation - An alternative to MatPreallocationSet() that puts the nonzero locations into the matrix if it exists 936 937 Synopsis: 938 #include <petscmat.h> 939 PetscErrorCode MatPreallocateLocations(Mat A,PetscInt row,PetscInt ncols,PetscInt *cols,PetscInt *dnz,PetscInt *onz) 940 941 Not Collective 942 943 Input Parameters: 944 . A - matrix 945 . row - row where values exist (must be local to this process) 946 . ncols - number of columns 947 . cols - columns with nonzeros 948 . dnz - the array that will be passed to the matrix preallocation routines 949 - ozn - the other array passed to the matrix preallocation routines 950 951 Level: intermediate 952 953 Notes: 954 See Users-Manual: ch_performance for more details. 955 956 Do not malloc or free dnz and onz that is handled internally by these routines 957 958 This is a MACRO not a function because it uses a bunch of variables private to the MatPreallocation.... routines. 959 960 Concepts: preallocation^Matrix 961 962 .seealso: MatPreallocateInitialize(), MatPreallocateSet(), MatPreallocateSymmetricSetBlock(), MatPreallocateSetLocal(), 963 MatPreallocateSymmetricSetLocalBlock() 964 M*/ 965 #define MatPreallocateLocation(A,row,ncols,cols,dnz,onz) 0;if (A) {ierr = MatSetValues(A,1,&row,ncols,cols,NULL,INSERT_VALUES);CHKERRQ(ierr);} else {ierr = MatPreallocateSet(row,ncols,cols,dnz,onz);CHKERRQ(ierr);} 966 967 968 /*MC 969 MatPreallocateFinalize - Ends the block of code that will count the number of nonzeros per 970 row in a matrix providing the data that one can use to correctly preallocate the matrix. 971 972 Synopsis: 973 #include <petscmat.h> 974 PetscErrorCode MatPreallocateFinalize(PetscInt *dnz, PetscInt *onz) 975 976 Collective on MPI_Comm 977 978 Input Parameters: 979 + dnz - the array that was be passed to the matrix preallocation routines 980 - ozn - the other array passed to the matrix preallocation routines 981 982 Level: intermediate 983 984 Notes: 985 See Users-Manual: ch_performance for more details. 986 987 Do not malloc or free dnz and onz that is handled internally by these routines 988 989 This is a MACRO not a function because it closes the { started in MatPreallocateInitialize(). 990 991 Concepts: preallocation^Matrix 992 993 .seealso: MatPreallocateInitialize(), MatPreallocateSet(), MatPreallocateSymmetricSetBlock(), MatPreallocateSetLocal(), 994 MatPreallocateSymmetricSetLocalBlock() 995 M*/ 996 #define MatPreallocateFinalize(dnz,onz) 0;_4_ierr = PetscFree2(dnz,onz);CHKERRQ(_4_ierr);} 997 998 /* Routines unique to particular data structures */ 999 PETSC_EXTERN PetscErrorCode MatShellGetContext(Mat,void *); 1000 1001 PETSC_EXTERN PetscErrorCode MatInodeAdjustForInodes(Mat,IS*,IS*); 1002 PETSC_EXTERN PetscErrorCode MatInodeGetInodeSizes(Mat,PetscInt *,PetscInt *[],PetscInt *); 1003 1004 PETSC_EXTERN PetscErrorCode MatSeqAIJSetColumnIndices(Mat,PetscInt[]); 1005 PETSC_EXTERN PetscErrorCode MatSeqBAIJSetColumnIndices(Mat,PetscInt[]); 1006 PETSC_EXTERN PetscErrorCode MatCreateSeqAIJWithArrays(MPI_Comm,PetscInt,PetscInt,PetscInt[],PetscInt[],PetscScalar[],Mat*); 1007 PETSC_EXTERN PetscErrorCode MatCreateSeqBAIJWithArrays(MPI_Comm,PetscInt,PetscInt,PetscInt,PetscInt[],PetscInt[],PetscScalar[],Mat*); 1008 PETSC_EXTERN PetscErrorCode MatCreateSeqSBAIJWithArrays(MPI_Comm,PetscInt,PetscInt,PetscInt,PetscInt[],PetscInt[],PetscScalar[],Mat*); 1009 PETSC_EXTERN PetscErrorCode MatCreateSeqAIJFromTriple(MPI_Comm,PetscInt,PetscInt,PetscInt[],PetscInt[],PetscScalar[],Mat*,PetscInt,PetscBool); 1010 1011 #define MAT_SKIP_ALLOCATION -4 1012 1013 PETSC_EXTERN PetscErrorCode MatSeqBAIJSetPreallocation(Mat,PetscInt,PetscInt,const PetscInt[]); 1014 PETSC_EXTERN PetscErrorCode MatSeqSBAIJSetPreallocation(Mat,PetscInt,PetscInt,const PetscInt[]); 1015 PETSC_EXTERN PetscErrorCode MatSeqAIJSetPreallocation(Mat,PetscInt,const PetscInt[]); 1016 1017 PETSC_EXTERN PetscErrorCode MatMPIBAIJSetPreallocation(Mat,PetscInt,PetscInt,const PetscInt[],PetscInt,const PetscInt[]); 1018 PETSC_EXTERN PetscErrorCode MatMPISBAIJSetPreallocation(Mat,PetscInt,PetscInt,const PetscInt[],PetscInt,const PetscInt[]); 1019 PETSC_EXTERN PetscErrorCode MatMPIAIJSetPreallocation(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[]); 1020 PETSC_EXTERN PetscErrorCode MatSeqAIJSetPreallocationCSR(Mat,const PetscInt [],const PetscInt [],const PetscScalar []); 1021 PETSC_EXTERN PetscErrorCode MatSeqBAIJSetPreallocationCSR(Mat,PetscInt,const PetscInt[],const PetscInt[],const PetscScalar[]); 1022 PETSC_EXTERN PetscErrorCode MatMPIAIJSetPreallocationCSR(Mat,const PetscInt[],const PetscInt[],const PetscScalar[]); 1023 PETSC_EXTERN PetscErrorCode MatMPIBAIJSetPreallocationCSR(Mat,PetscInt,const PetscInt[],const PetscInt[],const PetscScalar[]); 1024 PETSC_EXTERN PetscErrorCode MatMPIAdjSetPreallocation(Mat,PetscInt[],PetscInt[],PetscInt[]); 1025 PETSC_EXTERN PetscErrorCode MatMPIAdjToSeq(Mat,Mat*); 1026 PETSC_EXTERN PetscErrorCode MatMPIDenseSetPreallocation(Mat,PetscScalar[]); 1027 PETSC_EXTERN PetscErrorCode MatSeqDenseSetPreallocation(Mat,PetscScalar[]); 1028 PETSC_EXTERN PetscErrorCode MatMPIAIJGetSeqAIJ(Mat,Mat*,Mat*,const PetscInt*[]); 1029 PETSC_EXTERN PetscErrorCode MatMPIBAIJGetSeqBAIJ(Mat,Mat*,Mat*,const PetscInt*[]); 1030 PETSC_EXTERN PetscErrorCode MatMPIAdjCreateNonemptySubcommMat(Mat,Mat*); 1031 1032 PETSC_EXTERN PetscErrorCode MatISSetPreallocation(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[]); 1033 PETSC_EXTERN PetscErrorCode MatISSetUpSF(Mat); 1034 PETSC_EXTERN PetscErrorCode MatSeqDenseSetLDA(Mat,PetscInt); 1035 PETSC_EXTERN PetscErrorCode MatDenseGetLocalMatrix(Mat,Mat*); 1036 1037 PETSC_EXTERN PetscErrorCode MatStoreValues(Mat); 1038 PETSC_EXTERN PetscErrorCode MatRetrieveValues(Mat); 1039 1040 PETSC_EXTERN PetscErrorCode MatDAADSetCtx(Mat,void*); 1041 1042 PETSC_EXTERN PetscErrorCode MatFindNonzeroRows(Mat,IS*); 1043 PETSC_EXTERN PetscErrorCode MatFindZeroRows(Mat,IS*); 1044 /* 1045 These routines are not usually accessed directly, rather solving is 1046 done through the KSP and PC interfaces. 1047 */ 1048 1049 /*J 1050 MatOrderingType - String with the name of a PETSc matrix ordering 1051 1052 Level: beginner 1053 1054 .seealso: MatGetOrdering() 1055 J*/ 1056 typedef const char* MatOrderingType; 1057 #define MATORDERINGNATURAL "natural" 1058 #define MATORDERINGND "nd" 1059 #define MATORDERING1WD "1wd" 1060 #define MATORDERINGRCM "rcm" 1061 #define MATORDERINGQMD "qmd" 1062 #define MATORDERINGROWLENGTH "rowlength" 1063 #define MATORDERINGWBM "wbm" 1064 #define MATORDERINGSPECTRAL "spectral" 1065 #define MATORDERINGAMD "amd" /* only works if UMFPACK is installed with PETSc */ 1066 1067 PETSC_EXTERN PetscErrorCode MatGetOrdering(Mat,MatOrderingType,IS*,IS*); 1068 PETSC_EXTERN PetscErrorCode MatGetOrderingList(PetscFunctionList*); 1069 PETSC_EXTERN PetscErrorCode MatOrderingRegister(const char[],PetscErrorCode(*)(Mat,MatOrderingType,IS*,IS*)); 1070 PETSC_EXTERN PetscFunctionList MatOrderingList; 1071 1072 PETSC_EXTERN PetscErrorCode MatReorderForNonzeroDiagonal(Mat,PetscReal,IS,IS); 1073 PETSC_EXTERN PetscErrorCode MatCreateLaplacian(Mat,PetscReal,PetscBool,Mat*); 1074 1075 /*S 1076 MatFactorShiftType - Numeric Shift. 1077 1078 Level: beginner 1079 1080 S*/ 1081 typedef enum {MAT_SHIFT_NONE,MAT_SHIFT_NONZERO,MAT_SHIFT_POSITIVE_DEFINITE,MAT_SHIFT_INBLOCKS} MatFactorShiftType; 1082 PETSC_EXTERN const char *const MatFactorShiftTypes[]; 1083 PETSC_EXTERN const char *const MatFactorShiftTypesDetail[]; 1084 1085 /*S 1086 MatFactorError - indicates what type of error in matrix factor 1087 1088 Level: beginner 1089 1090 Developer Notes: Any additions/changes here MUST also be made in include/petsc/finclude/petscmat.h 1091 1092 .seealso: MatGetFactor() 1093 S*/ 1094 typedef enum {MAT_FACTOR_NOERROR,MAT_FACTOR_STRUCT_ZEROPIVOT,MAT_FACTOR_NUMERIC_ZEROPIVOT,MAT_FACTOR_OUTMEMORY,MAT_FACTOR_OTHER} MatFactorError; 1095 1096 PETSC_EXTERN PetscErrorCode MatFactorGetError(Mat,MatFactorError*); 1097 PETSC_EXTERN PetscErrorCode MatFactorClearError(Mat); 1098 PETSC_EXTERN PetscErrorCode MatFactorGetErrorZeroPivot(Mat,PetscReal*,PetscInt*); 1099 1100 /*S 1101 MatFactorInfo - Data passed into the matrix factorization routines, and information about the resulting factorization 1102 1103 In Fortran these are simply double precision arrays of size MAT_FACTORINFO_SIZE, that is use 1104 $ MatFactorInfo info(MAT_FACTORINFO_SIZE) 1105 1106 Notes: These are not usually directly used by users, instead use PC type of LU, ILU, CHOLESKY or ICC. 1107 1108 You can use MatFactorInfoInitialize() to set default values. 1109 1110 Level: developer 1111 1112 .seealso: MatLUFactorSymbolic(), MatILUFactorSymbolic(), MatCholeskyFactorSymbolic(), MatICCFactorSymbolic(), MatICCFactor(), 1113 MatFactorInfoInitialize() 1114 1115 S*/ 1116 typedef struct { 1117 PetscReal diagonal_fill; /* force diagonal to fill in if initially not filled */ 1118 PetscReal usedt; 1119 PetscReal dt; /* drop tolerance */ 1120 PetscReal dtcol; /* tolerance for pivoting */ 1121 PetscReal dtcount; /* maximum nonzeros to be allowed per row */ 1122 PetscReal fill; /* expected fill, nonzeros in factored matrix/nonzeros in original matrix */ 1123 PetscReal levels; /* ICC/ILU(levels) */ 1124 PetscReal pivotinblocks; /* for BAIJ and SBAIJ matrices pivot in factorization on blocks, default 1.0 1125 factorization may be faster if do not pivot */ 1126 PetscReal zeropivot; /* pivot is called zero if less than this */ 1127 PetscReal shifttype; /* type of shift added to matrix factor to prevent zero pivots */ 1128 PetscReal shiftamount; /* how large the shift is */ 1129 } MatFactorInfo; 1130 1131 PETSC_EXTERN PetscErrorCode MatFactorInfoInitialize(MatFactorInfo*); 1132 PETSC_EXTERN PetscErrorCode MatCholeskyFactor(Mat,IS,const MatFactorInfo*); 1133 PETSC_EXTERN PetscErrorCode MatCholeskyFactorSymbolic(Mat,Mat,IS,const MatFactorInfo*); 1134 PETSC_EXTERN PetscErrorCode MatCholeskyFactorNumeric(Mat,Mat,const MatFactorInfo*); 1135 PETSC_EXTERN PetscErrorCode MatLUFactor(Mat,IS,IS,const MatFactorInfo*); 1136 PETSC_EXTERN PetscErrorCode MatILUFactor(Mat,IS,IS,const MatFactorInfo*); 1137 PETSC_EXTERN PetscErrorCode MatLUFactorSymbolic(Mat,Mat,IS,IS,const MatFactorInfo*); 1138 PETSC_EXTERN PetscErrorCode MatILUFactorSymbolic(Mat,Mat,IS,IS,const MatFactorInfo*); 1139 PETSC_EXTERN PetscErrorCode MatICCFactorSymbolic(Mat,Mat,IS,const MatFactorInfo*); 1140 PETSC_EXTERN PetscErrorCode MatICCFactor(Mat,IS,const MatFactorInfo*); 1141 PETSC_EXTERN PetscErrorCode MatLUFactorNumeric(Mat,Mat,const MatFactorInfo*); 1142 PETSC_EXTERN PetscErrorCode MatGetInertia(Mat,PetscInt*,PetscInt*,PetscInt*); 1143 PETSC_EXTERN PetscErrorCode MatSolve(Mat,Vec,Vec); 1144 PETSC_EXTERN PetscErrorCode MatForwardSolve(Mat,Vec,Vec); 1145 PETSC_EXTERN PetscErrorCode MatBackwardSolve(Mat,Vec,Vec); 1146 PETSC_EXTERN PetscErrorCode MatSolveAdd(Mat,Vec,Vec,Vec); 1147 PETSC_EXTERN PetscErrorCode MatSolveTranspose(Mat,Vec,Vec); 1148 PETSC_EXTERN PetscErrorCode MatSolveTransposeAdd(Mat,Vec,Vec,Vec); 1149 PETSC_EXTERN PetscErrorCode MatSolves(Mat,Vecs,Vecs); 1150 PETSC_EXTERN PetscErrorCode MatSetUnfactored(Mat); 1151 1152 typedef enum {MAT_FACTOR_SCHUR_UNFACTORED, MAT_FACTOR_SCHUR_FACTORED, MAT_FACTOR_SCHUR_INVERTED} MatFactorSchurStatus; 1153 PETSC_EXTERN PetscErrorCode MatFactorSetSchurIS(Mat,IS); 1154 PETSC_EXTERN PetscErrorCode MatFactorGetSchurComplement(Mat,Mat*,MatFactorSchurStatus*); 1155 PETSC_EXTERN PetscErrorCode MatFactorRestoreSchurComplement(Mat,Mat*,MatFactorSchurStatus); 1156 PETSC_EXTERN PetscErrorCode MatFactorInvertSchurComplement(Mat); 1157 PETSC_EXTERN PetscErrorCode MatFactorCreateSchurComplement(Mat,Mat*,MatFactorSchurStatus*); 1158 PETSC_EXTERN PetscErrorCode MatFactorSolveSchurComplement(Mat,Vec,Vec); 1159 PETSC_EXTERN PetscErrorCode MatFactorSolveSchurComplementTranspose(Mat,Vec,Vec); 1160 PETSC_EXTERN PetscErrorCode MatFactorFactorizeSchurComplement(Mat); 1161 1162 /*E 1163 MatSORType - What type of (S)SOR to perform 1164 1165 Level: beginner 1166 1167 May be bitwise ORd together 1168 1169 Any additions/changes here MUST also be made in include/petsc/finclude/petscmat.h 1170 1171 MatSORType may be bitwise ORd together, so do not change the numbers 1172 1173 .seealso: MatSOR() 1174 E*/ 1175 typedef enum {SOR_FORWARD_SWEEP=1,SOR_BACKWARD_SWEEP=2,SOR_SYMMETRIC_SWEEP=3, 1176 SOR_LOCAL_FORWARD_SWEEP=4,SOR_LOCAL_BACKWARD_SWEEP=8, 1177 SOR_LOCAL_SYMMETRIC_SWEEP=12,SOR_ZERO_INITIAL_GUESS=16, 1178 SOR_EISENSTAT=32,SOR_APPLY_UPPER=64,SOR_APPLY_LOWER=128} MatSORType; 1179 PETSC_EXTERN PetscErrorCode MatSOR(Mat,Vec,PetscReal,MatSORType,PetscReal,PetscInt,PetscInt,Vec); 1180 1181 /* 1182 These routines are for efficiently computing Jacobians via finite differences. 1183 */ 1184 1185 /*S 1186 MatColoring - Object for managing the coloring of matrices. 1187 1188 Level: beginner 1189 1190 Concepts: matrix, coloring 1191 1192 .seealso: MatFDColoringCreate() ISColoring MatFDColoring 1193 S*/ 1194 typedef struct _p_MatColoring* MatColoring; 1195 /*J 1196 MatColoringType - String with the name of a PETSc matrix coloring 1197 1198 Level: beginner 1199 1200 .seealso: MatColoringSetType(), MatColoring 1201 J*/ 1202 1203 typedef const char* MatColoringType; 1204 #define MATCOLORINGJP "jp" 1205 #define MATCOLORINGPOWER "power" 1206 #define MATCOLORINGNATURAL "natural" 1207 #define MATCOLORINGSL "sl" 1208 #define MATCOLORINGLF "lf" 1209 #define MATCOLORINGID "id" 1210 #define MATCOLORINGGREEDY "greedy" 1211 1212 /*E 1213 MatColoringWeightType - Type of weight scheme 1214 1215 Not Collective 1216 1217 + MAT_COLORING_RANDOM - Random weights 1218 . MAT_COLORING_LEXICAL - Lexical weighting based upon global numbering. 1219 - MAT_COLORING_LF - Last-first weighting. 1220 1221 Level: intermediate 1222 1223 Any additions/changes here MUST also be made in include/petsc/finclude/petscmat.h 1224 E*/ 1225 typedef enum {MAT_COLORING_WEIGHT_RANDOM,MAT_COLORING_WEIGHT_LEXICAL,MAT_COLORING_WEIGHT_LF,MAT_COLORING_WEIGHT_SL} MatColoringWeightType; 1226 1227 PETSC_EXTERN PetscErrorCode MatColoringCreate(Mat,MatColoring*); 1228 PETSC_EXTERN PetscErrorCode MatColoringGetDegrees(Mat,PetscInt,PetscInt*); 1229 PETSC_EXTERN PetscErrorCode MatColoringDestroy(MatColoring*); 1230 PETSC_EXTERN PetscErrorCode MatColoringView(MatColoring,PetscViewer); 1231 PETSC_EXTERN PetscErrorCode MatColoringSetType(MatColoring,MatColoringType); 1232 PETSC_EXTERN PetscErrorCode MatColoringSetFromOptions(MatColoring); 1233 PETSC_EXTERN PetscErrorCode MatColoringSetDistance(MatColoring,PetscInt); 1234 PETSC_EXTERN PetscErrorCode MatColoringGetDistance(MatColoring,PetscInt*); 1235 PETSC_EXTERN PetscErrorCode MatColoringSetMaxColors(MatColoring,PetscInt); 1236 PETSC_EXTERN PetscErrorCode MatColoringGetMaxColors(MatColoring,PetscInt*); 1237 PETSC_EXTERN PetscErrorCode MatColoringApply(MatColoring,ISColoring*); 1238 PETSC_EXTERN PetscErrorCode MatColoringRegister(const char[],PetscErrorCode(*)(MatColoring)); 1239 PETSC_EXTERN PetscErrorCode MatColoringPatch(Mat,PetscInt,PetscInt,ISColoringValue[],ISColoring*); 1240 PETSC_EXTERN PetscErrorCode MatColoringSetWeightType(MatColoring,MatColoringWeightType); 1241 PETSC_EXTERN PetscErrorCode MatColoringSetWeights(MatColoring,PetscReal*,PetscInt*); 1242 PETSC_EXTERN PetscErrorCode MatColoringCreateWeights(MatColoring,PetscReal **,PetscInt **lperm); 1243 PETSC_EXTERN PetscErrorCode MatColoringTest(MatColoring,ISColoring); 1244 PETSC_EXTERN PetscErrorCode MatISColoringTest(Mat,ISColoring); 1245 1246 /*S 1247 MatFDColoring - Object for computing a sparse Jacobian via finite differences 1248 and coloring 1249 1250 Level: beginner 1251 1252 Concepts: coloring, sparse Jacobian, finite differences 1253 1254 .seealso: MatFDColoringCreate() 1255 S*/ 1256 typedef struct _p_MatFDColoring* MatFDColoring; 1257 1258 PETSC_EXTERN PetscErrorCode MatFDColoringCreate(Mat,ISColoring,MatFDColoring *); 1259 PETSC_EXTERN PetscErrorCode MatFDColoringDestroy(MatFDColoring*); 1260 PETSC_EXTERN PetscErrorCode MatFDColoringView(MatFDColoring,PetscViewer); 1261 PETSC_EXTERN PetscErrorCode MatFDColoringSetFunction(MatFDColoring,PetscErrorCode (*)(void),void*); 1262 PETSC_EXTERN PetscErrorCode MatFDColoringGetFunction(MatFDColoring,PetscErrorCode (**)(void),void**); 1263 PETSC_EXTERN PetscErrorCode MatFDColoringSetParameters(MatFDColoring,PetscReal,PetscReal); 1264 PETSC_EXTERN PetscErrorCode MatFDColoringSetFromOptions(MatFDColoring); 1265 PETSC_EXTERN PetscErrorCode MatFDColoringApply(Mat,MatFDColoring,Vec,void *); 1266 PETSC_EXTERN PetscErrorCode MatFDColoringSetF(MatFDColoring,Vec); 1267 PETSC_EXTERN PetscErrorCode MatFDColoringGetPerturbedColumns(MatFDColoring,PetscInt*,const PetscInt*[]); 1268 PETSC_EXTERN PetscErrorCode MatFDColoringSetUp(Mat,ISColoring,MatFDColoring); 1269 PETSC_EXTERN PetscErrorCode MatFDColoringSetBlockSize(MatFDColoring,PetscInt,PetscInt); 1270 1271 1272 /*S 1273 MatTransposeColoring - Object for computing a sparse matrix product C=A*B^T via coloring 1274 1275 Level: beginner 1276 1277 Concepts: coloring, sparse matrix product 1278 1279 .seealso: MatTransposeColoringCreate() 1280 S*/ 1281 typedef struct _p_MatTransposeColoring* MatTransposeColoring; 1282 1283 PETSC_EXTERN PetscErrorCode MatTransposeColoringCreate(Mat,ISColoring,MatTransposeColoring *); 1284 PETSC_EXTERN PetscErrorCode MatTransColoringApplySpToDen(MatTransposeColoring,Mat,Mat); 1285 PETSC_EXTERN PetscErrorCode MatTransColoringApplyDenToSp(MatTransposeColoring,Mat,Mat); 1286 PETSC_EXTERN PetscErrorCode MatTransposeColoringDestroy(MatTransposeColoring*); 1287 1288 /* 1289 These routines are for partitioning matrices: currently used only 1290 for adjacency matrix, MatCreateMPIAdj(). 1291 */ 1292 1293 /*S 1294 MatPartitioning - Object for managing the partitioning of a matrix or graph 1295 1296 Level: beginner 1297 1298 Concepts: partitioning 1299 1300 .seealso: MatPartitioningCreate(), MatPartitioningType 1301 S*/ 1302 typedef struct _p_MatPartitioning* MatPartitioning; 1303 1304 /*J 1305 MatPartitioningType - String with the name of a PETSc matrix partitioning 1306 1307 Level: beginner 1308 dm 1309 .seealso: MatPartitioningCreate(), MatPartitioning 1310 J*/ 1311 typedef const char* MatPartitioningType; 1312 #define MATPARTITIONINGCURRENT "current" 1313 #define MATPARTITIONINGAVERAGE "average" 1314 #define MATPARTITIONINGSQUARE "square" 1315 #define MATPARTITIONINGPARMETIS "parmetis" 1316 #define MATPARTITIONINGCHACO "chaco" 1317 #define MATPARTITIONINGPARTY "party" 1318 #define MATPARTITIONINGPTSCOTCH "ptscotch" 1319 #define MATPARTITIONINGHIERARCH "hierarch" 1320 1321 1322 PETSC_EXTERN PetscErrorCode MatPartitioningCreate(MPI_Comm,MatPartitioning*); 1323 PETSC_EXTERN PetscErrorCode MatPartitioningSetType(MatPartitioning,MatPartitioningType); 1324 PETSC_EXTERN PetscErrorCode MatPartitioningSetNParts(MatPartitioning,PetscInt); 1325 PETSC_EXTERN PetscErrorCode MatPartitioningSetAdjacency(MatPartitioning,Mat); 1326 PETSC_EXTERN PetscErrorCode MatPartitioningSetVertexWeights(MatPartitioning,const PetscInt[]); 1327 PETSC_EXTERN PetscErrorCode MatPartitioningSetPartitionWeights(MatPartitioning,const PetscReal []); 1328 PETSC_EXTERN PetscErrorCode MatPartitioningApply(MatPartitioning,IS*); 1329 PETSC_EXTERN PetscErrorCode MatPartitioningDestroy(MatPartitioning*); 1330 1331 PETSC_EXTERN PetscErrorCode MatPartitioningRegister(const char[],PetscErrorCode (*)(MatPartitioning)); 1332 1333 1334 1335 PETSC_EXTERN PetscErrorCode MatPartitioningView(MatPartitioning,PetscViewer); 1336 PETSC_EXTERN PetscErrorCode MatPartitioningSetFromOptions(MatPartitioning); 1337 PETSC_EXTERN PetscErrorCode MatPartitioningGetType(MatPartitioning,MatPartitioningType*); 1338 1339 PETSC_EXTERN PetscErrorCode MatPartitioningParmetisSetRepartition(MatPartitioning part); 1340 PETSC_EXTERN PetscErrorCode MatPartitioningParmetisSetCoarseSequential(MatPartitioning); 1341 PETSC_EXTERN PetscErrorCode MatPartitioningParmetisGetEdgeCut(MatPartitioning, PetscInt *); 1342 1343 typedef enum { MP_CHACO_MULTILEVEL=1,MP_CHACO_SPECTRAL=2,MP_CHACO_LINEAR=4,MP_CHACO_RANDOM=5,MP_CHACO_SCATTERED=6 } MPChacoGlobalType; 1344 PETSC_EXTERN const char *const MPChacoGlobalTypes[]; 1345 typedef enum { MP_CHACO_KERNIGHAN=1,MP_CHACO_NONE=2 } MPChacoLocalType; 1346 PETSC_EXTERN const char *const MPChacoLocalTypes[]; 1347 typedef enum { MP_CHACO_LANCZOS=0,MP_CHACO_RQI=1 } MPChacoEigenType; 1348 PETSC_EXTERN const char *const MPChacoEigenTypes[]; 1349 1350 PETSC_EXTERN PetscErrorCode MatPartitioningChacoSetGlobal(MatPartitioning,MPChacoGlobalType); 1351 PETSC_EXTERN PetscErrorCode MatPartitioningChacoGetGlobal(MatPartitioning,MPChacoGlobalType*); 1352 PETSC_EXTERN PetscErrorCode MatPartitioningChacoSetLocal(MatPartitioning,MPChacoLocalType); 1353 PETSC_EXTERN PetscErrorCode MatPartitioningChacoGetLocal(MatPartitioning,MPChacoLocalType*); 1354 PETSC_EXTERN PetscErrorCode MatPartitioningChacoSetCoarseLevel(MatPartitioning,PetscReal); 1355 PETSC_EXTERN PetscErrorCode MatPartitioningChacoSetEigenSolver(MatPartitioning,MPChacoEigenType); 1356 PETSC_EXTERN PetscErrorCode MatPartitioningChacoGetEigenSolver(MatPartitioning,MPChacoEigenType*); 1357 PETSC_EXTERN PetscErrorCode MatPartitioningChacoSetEigenTol(MatPartitioning,PetscReal); 1358 PETSC_EXTERN PetscErrorCode MatPartitioningChacoGetEigenTol(MatPartitioning,PetscReal*); 1359 PETSC_EXTERN PetscErrorCode MatPartitioningChacoSetEigenNumber(MatPartitioning,PetscInt); 1360 PETSC_EXTERN PetscErrorCode MatPartitioningChacoGetEigenNumber(MatPartitioning,PetscInt*); 1361 1362 #define MP_PARTY_OPT "opt" 1363 #define MP_PARTY_LIN "lin" 1364 #define MP_PARTY_SCA "sca" 1365 #define MP_PARTY_RAN "ran" 1366 #define MP_PARTY_GBF "gbf" 1367 #define MP_PARTY_GCF "gcf" 1368 #define MP_PARTY_BUB "bub" 1369 #define MP_PARTY_DEF "def" 1370 PETSC_EXTERN PetscErrorCode MatPartitioningPartySetGlobal(MatPartitioning,const char*); 1371 #define MP_PARTY_HELPFUL_SETS "hs" 1372 #define MP_PARTY_KERNIGHAN_LIN "kl" 1373 #define MP_PARTY_NONE "no" 1374 PETSC_EXTERN PetscErrorCode MatPartitioningPartySetLocal(MatPartitioning,const char*); 1375 PETSC_EXTERN PetscErrorCode MatPartitioningPartySetCoarseLevel(MatPartitioning,PetscReal); 1376 PETSC_EXTERN PetscErrorCode MatPartitioningPartySetBipart(MatPartitioning,PetscBool); 1377 PETSC_EXTERN PetscErrorCode MatPartitioningPartySetMatchOptimization(MatPartitioning,PetscBool); 1378 1379 typedef enum { MP_PTSCOTCH_DEFAULT,MP_PTSCOTCH_QUALITY,MP_PTSCOTCH_SPEED,MP_PTSCOTCH_BALANCE,MP_PTSCOTCH_SAFETY,MP_PTSCOTCH_SCALABILITY } MPPTScotchStrategyType; 1380 PETSC_EXTERN const char *const MPPTScotchStrategyTypes[]; 1381 1382 PETSC_EXTERN PetscErrorCode MatPartitioningPTScotchSetImbalance(MatPartitioning,PetscReal); 1383 PETSC_EXTERN PetscErrorCode MatPartitioningPTScotchGetImbalance(MatPartitioning,PetscReal*); 1384 PETSC_EXTERN PetscErrorCode MatPartitioningPTScotchSetStrategy(MatPartitioning,MPPTScotchStrategyType); 1385 PETSC_EXTERN PetscErrorCode MatPartitioningPTScotchGetStrategy(MatPartitioning,MPPTScotchStrategyType*); 1386 1387 /* 1388 * hierarchical partitioning 1389 */ 1390 PETSC_EXTERN PetscErrorCode MatPartitioningHierarchicalGetFineparts(MatPartitioning,IS*); 1391 PETSC_EXTERN PetscErrorCode MatPartitioningHierarchicalGetCoarseparts(MatPartitioning,IS*); 1392 PETSC_EXTERN PetscErrorCode MatPartitioningHierarchicalSetNcoarseparts(MatPartitioning,PetscInt); 1393 PETSC_EXTERN PetscErrorCode MatPartitioningHierarchicalSetNfineparts(MatPartitioning, PetscInt); 1394 1395 PETSC_EXTERN PetscErrorCode MatMeshToVertexGraph(Mat,PetscInt,Mat*); 1396 PETSC_EXTERN PetscErrorCode MatMeshToCellGraph(Mat,PetscInt,Mat*); 1397 1398 /* 1399 If you add entries here you must also add them to petsc/finclude/petscmat.h 1400 */ 1401 typedef enum { MATOP_SET_VALUES=0, 1402 MATOP_GET_ROW=1, 1403 MATOP_RESTORE_ROW=2, 1404 MATOP_MULT=3, 1405 MATOP_MULT_ADD=4, 1406 MATOP_MULT_TRANSPOSE=5, 1407 MATOP_MULT_TRANSPOSE_ADD=6, 1408 MATOP_SOLVE=7, 1409 MATOP_SOLVE_ADD=8, 1410 MATOP_SOLVE_TRANSPOSE=9, 1411 MATOP_SOLVE_TRANSPOSE_ADD=10, 1412 MATOP_LUFACTOR=11, 1413 MATOP_CHOLESKYFACTOR=12, 1414 MATOP_SOR=13, 1415 MATOP_TRANSPOSE=14, 1416 MATOP_GETINFO=15, 1417 MATOP_EQUAL=16, 1418 MATOP_GET_DIAGONAL=17, 1419 MATOP_DIAGONAL_SCALE=18, 1420 MATOP_NORM=19, 1421 MATOP_ASSEMBLY_BEGIN=20, 1422 MATOP_ASSEMBLY_END=21, 1423 MATOP_SET_OPTION=22, 1424 MATOP_ZERO_ENTRIES=23, 1425 MATOP_ZERO_ROWS=24, 1426 MATOP_LUFACTOR_SYMBOLIC=25, 1427 MATOP_LUFACTOR_NUMERIC=26, 1428 MATOP_CHOLESKY_FACTOR_SYMBOLIC=27, 1429 MATOP_CHOLESKY_FACTOR_NUMERIC=28, 1430 MATOP_SETUP_PREALLOCATION=29, 1431 MATOP_ILUFACTOR_SYMBOLIC=30, 1432 MATOP_ICCFACTOR_SYMBOLIC=31, 1433 MATOP_GET_DIAGONAL_BLOCK=32, 1434 /* MATOP_PLACEHOLDER_33=33, */ 1435 MATOP_DUPLICATE=34, 1436 MATOP_FORWARD_SOLVE=35, 1437 MATOP_BACKWARD_SOLVE=36, 1438 MATOP_ILUFACTOR=37, 1439 MATOP_ICCFACTOR=38, 1440 MATOP_AXPY=39, 1441 MATOP_CREATE_SUBMATRICES=40, 1442 MATOP_INCREASE_OVERLAP=41, 1443 MATOP_GET_VALUES=42, 1444 MATOP_COPY=43, 1445 MATOP_GET_ROW_MAX=44, 1446 MATOP_SCALE=45, 1447 MATOP_SHIFT=46, 1448 MATOP_DIAGONAL_SET=47, 1449 MATOP_ZERO_ROWS_COLUMNS=48, 1450 MATOP_SET_RANDOM=49, 1451 MATOP_GET_ROW_IJ=50, 1452 MATOP_RESTORE_ROW_IJ=51, 1453 MATOP_GET_COLUMN_IJ=52, 1454 MATOP_RESTORE_COLUMN_IJ=53, 1455 MATOP_FDCOLORING_CREATE=54, 1456 MATOP_COLORING_PATCH=55, 1457 MATOP_SET_UNFACTORED=56, 1458 MATOP_PERMUTE=57, 1459 MATOP_SET_VALUES_BLOCKED=58, 1460 MATOP_CREATE_SUBMATRIX=59, 1461 MATOP_DESTROY=60, 1462 MATOP_VIEW=61, 1463 MATOP_CONVERT_FROM=62, 1464 MATOP_MATMAT_MULT=63, 1465 MATOP_MATMAT_MULT_SYMBOLIC=64, 1466 MATOP_MATMAT_MULT_NUMERIC=65, 1467 MATOP_SET_LOCAL_TO_GLOBAL_MAP=66, 1468 MATOP_SET_VALUES_LOCAL=67, 1469 MATOP_ZERO_ROWS_LOCAL=68, 1470 MATOP_GET_ROW_MAX_ABS=69, 1471 MATOP_GET_ROW_MIN_ABS=70, 1472 MATOP_CONVERT=71, 1473 MATOP_SET_COLORING=72, 1474 /* MATOP_PLACEHOLDER_73=73, */ 1475 MATOP_SET_VALUES_ADIFOR=74, 1476 MATOP_FD_COLORING_APPLY=75, 1477 MATOP_SET_FROM_OPTIONS=76, 1478 MATOP_MULT_CONSTRAINED=77, 1479 MATOP_MULT_TRANSPOSE_CONSTRAIN=78, 1480 MATOP_FIND_ZERO_DIAGONALS=79, 1481 MATOP_MULT_MULTIPLE=80, 1482 MATOP_SOLVE_MULTIPLE=81, 1483 MATOP_GET_INERTIA=82, 1484 MATOP_LOAD=83, 1485 MATOP_IS_SYMMETRIC=84, 1486 MATOP_IS_HERMITIAN=85, 1487 MATOP_IS_STRUCTURALLY_SYMMETRIC=86, 1488 MATOP_SET_VALUES_BLOCKEDLOCAL=87, 1489 MATOP_CREATE_VECS=88, 1490 MATOP_MAT_MULT=89, 1491 MATOP_MAT_MULT_SYMBOLIC=90, 1492 MATOP_MAT_MULT_NUMERIC=91, 1493 MATOP_PTAP=92, 1494 MATOP_PTAP_SYMBOLIC=93, 1495 MATOP_PTAP_NUMERIC=94, 1496 MATOP_MAT_TRANSPOSE_MULT=95, 1497 MATOP_MAT_TRANSPOSE_MULT_SYMBO=96, 1498 MATOP_MAT_TRANSPOSE_MULT_NUMER=97, 1499 /* MATOP_PLACEHOLDER_98=98, */ 1500 /* MATOP_PLACEHOLDER_99=99, */ 1501 /* MATOP_PLACEHOLDER_100=100, */ 1502 /* MATOP_PLACEHOLDER_101=101, */ 1503 MATOP_CONJUGATE=102, 1504 /* MATOP_PLACEHOLDER_103=103, */ 1505 MATOP_SET_VALUES_ROW=104, 1506 MATOP_REAL_PART=105, 1507 MATOP_IMAGINARY_PART=106, 1508 MATOP_GET_ROW_UPPER_TRIANGULAR=107, 1509 MATOP_RESTORE_ROW_UPPER_TRIANG=108, 1510 MATOP_MAT_SOLVE=109, 1511 MATOP_MAT_SOLVE_TRANSPOSE=110, 1512 MATOP_GET_ROW_MIN=111, 1513 MATOP_GET_COLUMN_VECTOR=112, 1514 MATOP_MISSING_DIAGONAL=113, 1515 MATOP_GET_SEQ_NONZERO_STRUCTUR=114, 1516 MATOP_CREATE=115, 1517 MATOP_GET_GHOSTS=116, 1518 MATOP_GET_LOCAL_SUB_MATRIX=117, 1519 MATOP_RESTORE_LOCALSUB_MATRIX=118, 1520 MATOP_MULT_DIAGONAL_BLOCK=119, 1521 MATOP_HERMITIAN_TRANSPOSE=120, 1522 MATOP_MULT_HERMITIAN_TRANSPOSE=121, 1523 MATOP_MULT_HERMITIAN_TRANS_ADD=122, 1524 MATOP_GET_MULTI_PROC_BLOCK=123, 1525 MATOP_FIND_NONZERO_ROWS=124, 1526 MATOP_GET_COLUMN_NORMS=125, 1527 MATOP_INVERT_BLOCK_DIAGONAL=126, 1528 /* MATOP_PLACEHOLDER_127=127, */ 1529 MATOP_CREATE_SUB_MATRICES_MPI=128, 1530 MATOP_SET_VALUES_BATCH=129, 1531 MATOP_TRANSPOSE_MAT_MULT=130, 1532 MATOP_TRANSPOSE_MAT_MULT_SYMBO=131, 1533 MATOP_TRANSPOSE_MAT_MULT_NUMER=132, 1534 MATOP_TRANSPOSE_COLORING_CREAT=133, 1535 MATOP_TRANS_COLORING_APPLY_SPT=134, 1536 MATOP_TRANS_COLORING_APPLY_DEN=135, 1537 MATOP_RART=136, 1538 MATOP_RART_SYMBOLIC=137, 1539 MATOP_RART_NUMERIC=138, 1540 MATOP_SET_BLOCK_SIZES=139, 1541 MATOP_AYPX=140, 1542 MATOP_RESIDUAL=141, 1543 MATOP_FDCOLORING_SETUP=142, 1544 MATOP_MPICONCATENATESEQ=144, 1545 MATOP_DESTROYSUBMATRICES=145 1546 } MatOperation; 1547 PETSC_EXTERN PetscErrorCode MatSetOperation(Mat,MatOperation,void(*)(void)); 1548 PETSC_EXTERN PetscErrorCode MatGetOperation(Mat,MatOperation,void(**)(void)); 1549 PETSC_EXTERN PetscErrorCode MatHasOperation(Mat,MatOperation,PetscBool *); 1550 1551 PETSC_EXTERN PetscErrorCode MatShellSetOperation(Mat,MatOperation,void(*)(void)); 1552 PETSC_EXTERN PetscErrorCode MatShellGetOperation(Mat,MatOperation,void(**)(void)); 1553 PETSC_EXTERN PetscErrorCode MatShellSetContext(Mat,void*); 1554 PETSC_EXTERN PetscErrorCode MatShellTestMult(Mat,PetscErrorCode (*)(void*,Vec,Vec),Vec,void*,PetscBool*); 1555 PETSC_EXTERN PetscErrorCode MatShellTestMultTranspose(Mat,PetscErrorCode (*)(void*,Vec,Vec),Vec,void*,PetscBool*); 1556 PETSC_EXTERN PetscErrorCode MatShellSetManageScalingShifts(Mat); 1557 1558 /* 1559 Codes for matrices stored on disk. By default they are 1560 stored in a universal format. By changing the format with 1561 PetscViewerPushFormat(viewer,PETSC_VIEWER_NATIVE); the matrices will 1562 be stored in a way natural for the matrix, for example dense matrices 1563 would be stored as dense. Matrices stored this way may only be 1564 read into matrices of the same type. 1565 */ 1566 #define MATRIX_BINARY_FORMAT_DENSE -1 1567 1568 PETSC_EXTERN PetscErrorCode MatMPIBAIJSetHashTableFactor(Mat,PetscReal); 1569 PETSC_EXTERN PetscErrorCode MatISGetLocalMat(Mat,Mat*); 1570 PETSC_EXTERN PetscErrorCode MatISRestoreLocalMat(Mat,Mat*); 1571 PETSC_EXTERN PetscErrorCode MatISSetLocalMat(Mat,Mat); 1572 PETSC_EXTERN PetscErrorCode MatISGetMPIXAIJ(Mat,MatReuse,Mat*); 1573 1574 /*S 1575 MatNullSpace - Object that removes a null space from a vector, i.e. 1576 orthogonalizes the vector to a subsapce 1577 1578 Level: advanced 1579 1580 Concepts: matrix; linear operator, null space 1581 1582 Users manual sections: 1583 . sec_singular 1584 1585 .seealso: MatNullSpaceCreate() 1586 S*/ 1587 typedef struct _p_MatNullSpace* MatNullSpace; 1588 1589 PETSC_EXTERN PetscErrorCode MatNullSpaceCreate(MPI_Comm,PetscBool ,PetscInt,const Vec[],MatNullSpace*); 1590 PETSC_EXTERN PetscErrorCode MatNullSpaceSetFunction(MatNullSpace,PetscErrorCode (*)(MatNullSpace,Vec,void*),void*); 1591 PETSC_EXTERN PetscErrorCode MatNullSpaceDestroy(MatNullSpace*); 1592 PETSC_EXTERN PetscErrorCode MatNullSpaceRemove(MatNullSpace,Vec); 1593 PETSC_EXTERN PetscErrorCode MatGetNullSpace(Mat, MatNullSpace *); 1594 PETSC_EXTERN PetscErrorCode MatGetTransposeNullSpace(Mat, MatNullSpace *); 1595 PETSC_EXTERN PetscErrorCode MatSetTransposeNullSpace(Mat,MatNullSpace); 1596 PETSC_EXTERN PetscErrorCode MatSetNullSpace(Mat,MatNullSpace); 1597 PETSC_EXTERN PetscErrorCode MatSetNearNullSpace(Mat,MatNullSpace); 1598 PETSC_EXTERN PetscErrorCode MatGetNearNullSpace(Mat,MatNullSpace*); 1599 PETSC_EXTERN PetscErrorCode MatNullSpaceTest(MatNullSpace,Mat,PetscBool *); 1600 PETSC_EXTERN PetscErrorCode MatNullSpaceView(MatNullSpace,PetscViewer); 1601 PETSC_EXTERN PetscErrorCode MatNullSpaceGetVecs(MatNullSpace,PetscBool*,PetscInt*,const Vec**); 1602 PETSC_EXTERN PetscErrorCode MatNullSpaceCreateRigidBody(Vec,MatNullSpace*); 1603 1604 PETSC_EXTERN PetscErrorCode MatReorderingSeqSBAIJ(Mat,IS); 1605 PETSC_EXTERN PetscErrorCode MatMPISBAIJSetHashTableFactor(Mat,PetscReal); 1606 PETSC_EXTERN PetscErrorCode MatSeqSBAIJSetColumnIndices(Mat,PetscInt *); 1607 PETSC_EXTERN PetscErrorCode MatSeqBAIJInvertBlockDiagonal(Mat); 1608 1609 PETSC_EXTERN PetscErrorCode MatCreateMAIJ(Mat,PetscInt,Mat*); 1610 PETSC_EXTERN PetscErrorCode MatMAIJRedimension(Mat,PetscInt,Mat*); 1611 PETSC_EXTERN PetscErrorCode MatMAIJGetAIJ(Mat,Mat*); 1612 1613 PETSC_EXTERN PetscErrorCode MatComputeExplicitOperator(Mat,Mat*); 1614 PETSC_EXTERN PetscErrorCode MatComputeExplicitOperatorTranspose(Mat,Mat*); 1615 1616 PETSC_EXTERN PetscErrorCode MatDiagonalScaleLocal(Mat,Vec); 1617 1618 PETSC_EXTERN PetscErrorCode MatCreateMFFD(MPI_Comm,PetscInt,PetscInt,PetscInt,PetscInt,Mat*); 1619 PETSC_EXTERN PetscErrorCode MatMFFDSetBase(Mat,Vec,Vec); 1620 PETSC_EXTERN PetscErrorCode MatMFFDSetFunction(Mat,PetscErrorCode(*)(void*,Vec,Vec),void*); 1621 PETSC_EXTERN PetscErrorCode MatMFFDSetFunctioni(Mat,PetscErrorCode (*)(void*,PetscInt,Vec,PetscScalar*)); 1622 PETSC_EXTERN PetscErrorCode MatMFFDSetFunctioniBase(Mat,PetscErrorCode (*)(void*,Vec)); 1623 PETSC_EXTERN PetscErrorCode MatMFFDSetHHistory(Mat,PetscScalar[],PetscInt); 1624 PETSC_EXTERN PetscErrorCode MatMFFDResetHHistory(Mat); 1625 PETSC_EXTERN PetscErrorCode MatMFFDSetFunctionError(Mat,PetscReal); 1626 PETSC_EXTERN PetscErrorCode MatMFFDSetPeriod(Mat,PetscInt); 1627 PETSC_EXTERN PetscErrorCode MatMFFDGetH(Mat,PetscScalar *); 1628 PETSC_EXTERN PetscErrorCode MatMFFDSetOptionsPrefix(Mat,const char[]); 1629 PETSC_EXTERN PetscErrorCode MatMFFDCheckPositivity(void*,Vec,Vec,PetscScalar*); 1630 PETSC_EXTERN PetscErrorCode MatMFFDSetCheckh(Mat,PetscErrorCode (*)(void*,Vec,Vec,PetscScalar*),void*); 1631 1632 /*S 1633 MatMFFD - A data structured used to manage the computation of the h differencing parameter for matrix-free 1634 Jacobian vector products 1635 1636 Notes: MATMFFD is a specific MatType which uses the MatMFFD data structure 1637 1638 MatMFFD*() methods actually take the Mat as their first argument. Not a MatMFFD data structure 1639 1640 Level: developer 1641 1642 .seealso: MATMFFD, MatCreateMFFD(), MatMFFDSetFuction(), MatMFFDSetType(), MatMFFDRegister() 1643 S*/ 1644 typedef struct _p_MatMFFD* MatMFFD; 1645 1646 /*J 1647 MatMFFDType - algorithm used to compute the h used in computing matrix-vector products via differencing of the function 1648 1649 Level: beginner 1650 1651 .seealso: MatMFFDSetType(), MatMFFDRegister() 1652 J*/ 1653 typedef const char* MatMFFDType; 1654 #define MATMFFD_DS "ds" 1655 #define MATMFFD_WP "wp" 1656 1657 PETSC_EXTERN PetscErrorCode MatMFFDSetType(Mat,MatMFFDType); 1658 PETSC_EXTERN PetscErrorCode MatMFFDRegister(const char[],PetscErrorCode (*)(MatMFFD)); 1659 1660 PETSC_EXTERN PetscErrorCode MatMFFDDSSetUmin(Mat,PetscReal); 1661 PETSC_EXTERN PetscErrorCode MatMFFDWPSetComputeNormU(Mat,PetscBool ); 1662 1663 PETSC_EXTERN PetscErrorCode MatFDColoringSetType(MatFDColoring,MatMFFDType); 1664 1665 PETSC_EXTERN PetscErrorCode PetscViewerMathematicaPutMatrix(PetscViewer, PetscInt, PetscInt, PetscReal *); 1666 PETSC_EXTERN PetscErrorCode PetscViewerMathematicaPutCSRMatrix(PetscViewer, PetscInt, PetscInt, PetscInt *, PetscInt *, PetscReal *); 1667 1668 /* 1669 PETSc interface to MUMPS 1670 */ 1671 #ifdef PETSC_HAVE_MUMPS 1672 PETSC_EXTERN PetscErrorCode MatMumpsSetIcntl(Mat,PetscInt,PetscInt); 1673 PETSC_EXTERN PetscErrorCode MatMumpsGetIcntl(Mat,PetscInt,PetscInt*); 1674 PETSC_EXTERN PetscErrorCode MatMumpsSetCntl(Mat,PetscInt,PetscReal); 1675 PETSC_EXTERN PetscErrorCode MatMumpsGetCntl(Mat,PetscInt,PetscReal*); 1676 1677 PETSC_EXTERN PetscErrorCode MatMumpsGetInfo(Mat,PetscInt,PetscInt*); 1678 PETSC_EXTERN PetscErrorCode MatMumpsGetInfog(Mat,PetscInt,PetscInt*); 1679 PETSC_EXTERN PetscErrorCode MatMumpsGetRinfo(Mat,PetscInt,PetscReal*); 1680 PETSC_EXTERN PetscErrorCode MatMumpsGetRinfog(Mat,PetscInt,PetscReal*); 1681 PETSC_EXTERN PetscErrorCode MatMumpsGetInverse(Mat,Mat); 1682 #endif 1683 1684 /* 1685 PETSc interface to Mkl_Pardiso 1686 */ 1687 #ifdef PETSC_HAVE_MKL_PARDISO 1688 PETSC_EXTERN PetscErrorCode MatMkl_PardisoSetCntl(Mat,PetscInt,PetscInt); 1689 #endif 1690 1691 /* 1692 PETSc interface to Mkl_CPardiso 1693 */ 1694 #ifdef PETSC_HAVE_MKL_CPARDISO 1695 PETSC_EXTERN PetscErrorCode MatMkl_CPardisoSetCntl(Mat,PetscInt,PetscInt); 1696 #endif 1697 1698 /* 1699 PETSc interface to SUPERLU 1700 */ 1701 #ifdef PETSC_HAVE_SUPERLU 1702 PETSC_EXTERN PetscErrorCode MatSuperluSetILUDropTol(Mat,PetscReal); 1703 #endif 1704 1705 /* 1706 PETSc interface to SUPERLU_DIST 1707 */ 1708 #ifdef PETSC_HAVE_SUPERLU_DIST 1709 PETSC_EXTERN PetscErrorCode MatSuperluDistGetDiagU(Mat,PetscScalar*); 1710 #endif 1711 1712 /* 1713 PETSc interface to STRUMPACK 1714 */ 1715 #ifdef PETSC_HAVE_STRUMPACK 1716 /*E 1717 MatSTRUMPACKReordering - sparsity reducing ordering to be used in STRUMPACK 1718 1719 Level: intermediate 1720 E*/ 1721 typedef enum {MAT_STRUMPACK_NATURAL=0, 1722 MAT_STRUMPACK_METIS=1, 1723 MAT_STRUMPACK_PARMETIS=2, 1724 MAT_STRUMPACK_SCOTCH=3, 1725 MAT_STRUMPACK_PTSCOTCH=4, 1726 MAT_STRUMPACK_RCM=5} MatSTRUMPACKReordering; 1727 PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetReordering(Mat,MatSTRUMPACKReordering); 1728 PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetColPerm(Mat,PetscBool); 1729 PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetHSSRelTol(Mat,PetscReal); 1730 PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetHSSAbsTol(Mat,PetscReal); 1731 PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetHSSMinSepSize(Mat,PetscInt); 1732 PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetHSSMaxRank(Mat,PetscInt); 1733 PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetHSSLeafSize(Mat,PetscInt); 1734 #endif 1735 1736 1737 #ifdef PETSC_HAVE_CUDA 1738 /*E 1739 MatCUSPARSEStorageFormat - indicates the storage format for CUSPARSE (GPU) 1740 matrices. 1741 1742 Not Collective 1743 1744 + MAT_CUSPARSE_CSR - Compressed Sparse Row 1745 . MAT_CUSPARSE_ELL - Ellpack (requires CUDA 4.2 or later). 1746 - MAT_CUSPARSE_HYB - Hybrid, a combination of Ellpack and Coordinate format (requires CUDA 4.2 or later). 1747 1748 Level: intermediate 1749 1750 Any additions/changes here MUST also be made in include/petsc/finclude/petscmat.h 1751 1752 .seealso: MatCUSPARSESetFormat(), MatCUSPARSEFormatOperation 1753 E*/ 1754 1755 typedef enum {MAT_CUSPARSE_CSR, MAT_CUSPARSE_ELL, MAT_CUSPARSE_HYB} MatCUSPARSEStorageFormat; 1756 1757 /* these will be strings associated with enumerated type defined above */ 1758 PETSC_EXTERN const char *const MatCUSPARSEStorageFormats[]; 1759 1760 /*E 1761 MatCUSPARSEFormatOperation - indicates the operation of CUSPARSE (GPU) 1762 matrices whose operation should use a particular storage format. 1763 1764 Not Collective 1765 1766 + MAT_CUSPARSE_MULT_DIAG - sets the storage format for the diagonal matrix in the parallel MatMult 1767 . MAT_CUSPARSE_MULT_OFFDIAG - sets the storage format for the offdiagonal matrix in the parallel MatMult 1768 . MAT_CUSPARSE_MULT - sets the storage format for the entire matrix in the serial (single GPU) MatMult 1769 - MAT_CUSPARSE_ALL - sets the storage format for all CUSPARSE (GPU) matrices 1770 1771 Level: intermediate 1772 1773 .seealso: MatCUSPARSESetFormat(), MatCUSPARSEStorageFormat 1774 E*/ 1775 typedef enum {MAT_CUSPARSE_MULT_DIAG, MAT_CUSPARSE_MULT_OFFDIAG, MAT_CUSPARSE_MULT, MAT_CUSPARSE_ALL} MatCUSPARSEFormatOperation; 1776 1777 PETSC_EXTERN PetscErrorCode MatCreateSeqAIJCUSPARSE(MPI_Comm,PetscInt,PetscInt,PetscInt,const PetscInt[],Mat*); 1778 PETSC_EXTERN PetscErrorCode MatCreateAIJCUSPARSE(MPI_Comm,PetscInt,PetscInt,PetscInt,PetscInt,PetscInt,const PetscInt[],PetscInt,const PetscInt[],Mat*); 1779 PETSC_EXTERN PetscErrorCode MatCUSPARSESetFormat(Mat,MatCUSPARSEFormatOperation,MatCUSPARSEStorageFormat); 1780 #endif 1781 1782 #if defined(PETSC_HAVE_VIENNACL) 1783 PETSC_EXTERN PetscErrorCode MatCreateSeqAIJViennaCL(MPI_Comm,PetscInt,PetscInt,PetscInt,const PetscInt[],Mat*); 1784 PETSC_EXTERN PetscErrorCode MatCreateAIJViennaCL(MPI_Comm,PetscInt,PetscInt,PetscInt,PetscInt,PetscInt,const PetscInt[],PetscInt,const PetscInt[],Mat*); 1785 #endif 1786 1787 /* 1788 PETSc interface to FFTW 1789 */ 1790 #if defined(PETSC_HAVE_FFTW) 1791 PETSC_EXTERN PetscErrorCode VecScatterPetscToFFTW(Mat,Vec,Vec); 1792 PETSC_EXTERN PetscErrorCode VecScatterFFTWToPetsc(Mat,Vec,Vec); 1793 PETSC_EXTERN PetscErrorCode MatCreateVecsFFTW(Mat,Vec*,Vec*,Vec*); 1794 #endif 1795 1796 PETSC_EXTERN PetscErrorCode MatCreateNest(MPI_Comm,PetscInt,const IS[],PetscInt,const IS[],const Mat[],Mat*); 1797 PETSC_EXTERN PetscErrorCode MatNestGetSize(Mat,PetscInt*,PetscInt*); 1798 PETSC_EXTERN PetscErrorCode MatNestGetISs(Mat,IS[],IS[]); 1799 PETSC_EXTERN PetscErrorCode MatNestGetLocalISs(Mat,IS[],IS[]); 1800 PETSC_EXTERN PetscErrorCode MatNestGetSubMats(Mat,PetscInt*,PetscInt*,Mat***); 1801 PETSC_EXTERN PetscErrorCode MatNestGetSubMat(Mat,PetscInt,PetscInt,Mat*); 1802 PETSC_EXTERN PetscErrorCode MatNestSetVecType(Mat,VecType); 1803 PETSC_EXTERN PetscErrorCode MatNestSetSubMats(Mat,PetscInt,const IS[],PetscInt,const IS[],const Mat[]); 1804 PETSC_EXTERN PetscErrorCode MatNestSetSubMat(Mat,PetscInt,PetscInt,Mat); 1805 1806 PETSC_EXTERN PetscErrorCode MatChop(Mat,PetscReal); 1807 PETSC_EXTERN PetscErrorCode MatComputeBandwidth(Mat,PetscReal,PetscInt*); 1808 1809 PETSC_EXTERN PetscErrorCode MatSubdomainsCreateCoalesce(Mat,PetscInt,PetscInt*,IS**); 1810 1811 PETSC_EXTERN PetscErrorCode MatPreallocatorPreallocate(Mat,PetscBool,Mat); 1812 1813 PETSC_INTERN PetscErrorCode MatHeaderMerge(Mat,Mat*); 1814 PETSC_EXTERN PetscErrorCode MatHeaderReplace(Mat,Mat*); 1815 1816 #endif 1817