1d382aafbSBarry Smith /* 2d382aafbSBarry Smith This is the main PETSc include file (for C and C++). It is included by all 3d382aafbSBarry Smith other PETSc include files, so it almost never has to be specifically included. 4d382aafbSBarry Smith */ 56c7e564aSBarry Smith #if !defined(__PETSCSYS_H) 66c7e564aSBarry Smith #define __PETSCSYS_H 7d382aafbSBarry Smith /* ========================================================================== */ 8d382aafbSBarry Smith /* 9d382aafbSBarry Smith petscconf.h is contained in ${PETSC_ARCH}/include/petscconf.h it is 101cc8b206SBarry Smith found automatically by the compiler due to the -I${PETSC_DIR}/${PETSC_ARCH}/include. 111cc8b206SBarry Smith For --prefix installs the ${PETSC_ARCH}/ does not exist and petscconf.h is in the same 121cc8b206SBarry Smith directory as the other PETSc include files. 13d382aafbSBarry Smith */ 142c8e378dSBarry Smith #include <petscconf.h> 152c8e378dSBarry Smith #include <petscfix.h> 16d382aafbSBarry Smith 1773fca5a0SBarry Smith #if defined(PETSC_DESIRE_FEATURE_TEST_MACROS) 1873fca5a0SBarry Smith /* 1973fca5a0SBarry Smith Feature test macros must be included before headers defined by IEEE Std 1003.1-2001 2073fca5a0SBarry Smith We only turn these in PETSc source files that require them by setting PETSC_DESIRE_FEATURE_TEST_MACROS 2173fca5a0SBarry Smith */ 22216f1ae6SBarry Smith #if defined(PETSC__POSIX_C_SOURCE_200112L) && !defined(_POSIX_C_SOURCE) 2373fca5a0SBarry Smith #define _POSIX_C_SOURCE 200112L 2473fca5a0SBarry Smith #endif 25216f1ae6SBarry Smith #if defined(PETSC__BSD_SOURCE) && !defined(_BSD_SOURCE) 2673fca5a0SBarry Smith #define _BSD_SOURCE 2773fca5a0SBarry Smith #endif 2807f00807SSatish Balay #if defined(PETSC__DEFAULT_SOURCE) && !defined(_DEFAULT_SOURCE) 2907f00807SSatish Balay #define _DEFAULT_SOURCE 3007f00807SSatish Balay #endif 31ea0fecefSShri Abhyankar #if defined(PETSC__GNU_SOURCE) && !defined(_GNU_SOURCE) 32ea0fecefSShri Abhyankar #define _GNU_SOURCE 33ea0fecefSShri Abhyankar #endif 3473fca5a0SBarry Smith #endif 3573fca5a0SBarry Smith 36d382aafbSBarry Smith /* ========================================================================== */ 37d382aafbSBarry Smith /* 382c280183SJed Brown This facilitates using the C version of PETSc from C++ and the C++ version from C. 39d382aafbSBarry Smith */ 401ec50b02SJed Brown #if defined(__cplusplus) 411ec50b02SJed Brown # define PETSC_FUNCTION_NAME PETSC_FUNCTION_NAME_CXX 421ec50b02SJed Brown #else 431ec50b02SJed Brown # define PETSC_FUNCTION_NAME PETSC_FUNCTION_NAME_C 441ec50b02SJed Brown #endif 45d382aafbSBarry Smith 46c5e4d11fSDmitry Karpeev /* ========================================================================== */ 47c5e4d11fSDmitry Karpeev /* 48c5e4d11fSDmitry Karpeev Since PETSc manages its own extern "C" handling users should never include PETSc include 491cc8b206SBarry Smith files within extern "C". This will generate a compiler error if a user does put the include 501cc8b206SBarry Smith file within an extern "C". 51c5e4d11fSDmitry Karpeev */ 52c5e4d11fSDmitry Karpeev #if defined(__cplusplus) 53c5e4d11fSDmitry Karpeev void assert_never_put_petsc_headers_inside_an_extern_c(int); void assert_never_put_petsc_headers_inside_an_extern_c(double); 54c5e4d11fSDmitry Karpeev #endif 55c5e4d11fSDmitry Karpeev 56ed938b00SJed Brown #if defined(__cplusplus) 57ed938b00SJed Brown # define PETSC_RESTRICT PETSC_CXX_RESTRICT 58ed938b00SJed Brown #else 59ed938b00SJed Brown # define PETSC_RESTRICT PETSC_C_RESTRICT 60ed938b00SJed Brown #endif 61ed938b00SJed Brown 62ed938b00SJed Brown #if defined(__cplusplus) 63ed938b00SJed Brown # define PETSC_STATIC_INLINE PETSC_CXX_STATIC_INLINE 64ed938b00SJed Brown #else 65ed938b00SJed Brown # define PETSC_STATIC_INLINE PETSC_C_STATIC_INLINE 66ed938b00SJed Brown #endif 67ed938b00SJed Brown 68ab699e31SSatish Balay #if defined(_WIN32) && defined(PETSC_USE_SHARED_LIBRARIES) /* For Win32 shared libraries */ 69014dd563SJed Brown # define PETSC_DLLEXPORT __declspec(dllexport) 70014dd563SJed Brown # define PETSC_DLLIMPORT __declspec(dllimport) 7121f66b81SJed Brown # define PETSC_VISIBILITY_INTERNAL 7226703958SBarry Smith #elif defined(PETSC_USE_VISIBILITY_CXX) && defined(__cplusplus) 7326703958SBarry Smith # define PETSC_DLLEXPORT __attribute__((visibility ("default"))) 7426703958SBarry Smith # define PETSC_DLLIMPORT __attribute__((visibility ("default"))) 7526703958SBarry Smith # define PETSC_VISIBILITY_INTERNAL __attribute__((visibility ("hidden"))) 7626703958SBarry Smith #elif defined(PETSC_USE_VISIBILITY_C) && !defined(__cplusplus) 77014dd563SJed Brown # define PETSC_DLLEXPORT __attribute__((visibility ("default"))) 78014dd563SJed Brown # define PETSC_DLLIMPORT __attribute__((visibility ("default"))) 7921f66b81SJed Brown # define PETSC_VISIBILITY_INTERNAL __attribute__((visibility ("hidden"))) 80d382aafbSBarry Smith #else 81014dd563SJed Brown # define PETSC_DLLEXPORT 82014dd563SJed Brown # define PETSC_DLLIMPORT 8321f66b81SJed Brown # define PETSC_VISIBILITY_INTERNAL 84014dd563SJed Brown #endif 85014dd563SJed Brown 86014dd563SJed Brown #if defined(petsc_EXPORTS) /* CMake defines this when building the shared library */ 87014dd563SJed Brown # define PETSC_VISIBILITY_PUBLIC PETSC_DLLEXPORT 88014dd563SJed Brown #else /* Win32 users need this to import symbols from petsc.dll */ 89014dd563SJed Brown # define PETSC_VISIBILITY_PUBLIC PETSC_DLLIMPORT 90014dd563SJed Brown #endif 91014dd563SJed Brown 921cc8b206SBarry Smith /* 931cc8b206SBarry Smith Functions tagged with PETSC_EXTERN in the header files are 941cc8b206SBarry Smith always defined as extern "C" when compiled with C++ so they may be 951cc8b206SBarry Smith used from C and are always visible in the shared libraries 961cc8b206SBarry Smith */ 972c280183SJed Brown #if defined(__cplusplus) 98014dd563SJed Brown #define PETSC_EXTERN extern "C" PETSC_VISIBILITY_PUBLIC 99638cfed1SJed Brown #define PETSC_EXTERN_TYPEDEF extern "C" 10021f66b81SJed Brown #define PETSC_INTERN extern "C" PETSC_VISIBILITY_INTERNAL 101014dd563SJed Brown #else 102014dd563SJed Brown #define PETSC_EXTERN extern PETSC_VISIBILITY_PUBLIC 103638cfed1SJed Brown #define PETSC_EXTERN_TYPEDEF 1046258c452SJed Brown #define PETSC_INTERN extern PETSC_VISIBILITY_INTERNAL 105d382aafbSBarry Smith #endif 10627710113SBarry Smith 1072c8e378dSBarry Smith #include <petscversion.h> 108301d30feSBarry Smith #define PETSC_AUTHOR_INFO " The PETSc Team\n petsc-maint@mcs.anl.gov\n http://www.mcs.anl.gov/petsc/\n" 109d382aafbSBarry Smith 110d382aafbSBarry Smith /* ========================================================================== */ 111d382aafbSBarry Smith 112d382aafbSBarry Smith /* 113d382aafbSBarry Smith Defines the interface to MPI allowing the use of all MPI functions. 114d382aafbSBarry Smith 115d382aafbSBarry Smith PETSc does not use the C++ binding of MPI at ALL. The following flag 116d382aafbSBarry Smith makes sure the C++ bindings are not included. The C++ bindings REQUIRE 117d382aafbSBarry Smith putting mpi.h before ANY C++ include files, we cannot control this 118d382aafbSBarry Smith with all PETSc users. Users who want to use the MPI C++ bindings can include 119d382aafbSBarry Smith mpicxx.h directly in their code 120d382aafbSBarry Smith */ 121fa9e63e2SJed Brown #if !defined(MPICH_SKIP_MPICXX) 122d382aafbSBarry Smith # define MPICH_SKIP_MPICXX 1 123fa9e63e2SJed Brown #endif 124fa9e63e2SJed Brown #if !defined(OMPI_SKIP_MPICXX) 125d382aafbSBarry Smith # define OMPI_SKIP_MPICXX 1 126fa9e63e2SJed Brown #endif 127076e11b5SSatish Balay #if !defined(OMPI_WANT_MPI_INTERFACE_WARNING) 128076e11b5SSatish Balay # define OMPI_WANT_MPI_INTERFACE_WARNING 0 129076e11b5SSatish Balay #endif 1302c8e378dSBarry Smith #include <mpi.h> 13165013866SBarry Smith 132d382aafbSBarry Smith /* 133a7886beaSBarry Smith Perform various sanity checks that the correct mpi.h is being included at compile time. 134a7886beaSBarry Smith This usually happens because 135a7886beaSBarry Smith * either an unexpected mpi.h is in the default compiler path (i.e. in /usr/include) or 136a7886beaSBarry Smith * an extra include path -I/something (which contains the unexpected mpi.h) is being passed to the compiler 137a7886beaSBarry Smith */ 138a7886beaSBarry Smith #if defined(PETSC_HAVE_MPIUNI) 139a7886beaSBarry Smith # if !defined(__MPIUNI_H) 140a7886beaSBarry Smith # error "PETSc was configured with --with-mpi=0 but now appears to be compiling using a different mpi.h" 141a7886beaSBarry Smith # endif 14241f4af4cSSatish Balay #elif defined(PETSC_HAVE_I_MPI_NUMVERSION) 14341f4af4cSSatish Balay # if !defined(I_MPI_NUMVERSION) 14441f4af4cSSatish Balay # error "PETSc was configured with I_MPI but now appears to be compiling using a non-I_MPI mpi.h" 14541f4af4cSSatish Balay # elif I_MPI_NUMVERSION != PETSC_HAVE_I_MPI_NUMVERSION 14641f4af4cSSatish Balay # error "PETSc was configured with one I_MPI mpi.h version but now appears to be compiling using a different I_MPI mpi.h version" 14741f4af4cSSatish Balay # endif 14841f4af4cSSatish Balay #elif defined(PETSC_HAVE_MVAPICH2_NUMVERSION) 14941f4af4cSSatish Balay # if !defined(MVAPICH2_NUMVERSION) 15041f4af4cSSatish Balay # error "PETSc was configured with MVAPICH2 but now appears to be compiling using a non-MVAPICH2 mpi.h" 15141f4af4cSSatish Balay # elif MVAPICH2_NUMVERSION != PETSC_HAVE_MVAPICH2_NUMVERSION 15241f4af4cSSatish Balay # error "PETSc was configured with one MVAPICH2 mpi.h version but now appears to be compiling using a different MVAPICH2 mpi.h version" 15341f4af4cSSatish Balay # endif 154a7886beaSBarry Smith #elif defined(PETSC_HAVE_MPICH_NUMVERSION) 15541f4af4cSSatish Balay # if !defined(MPICH_NUMVERSION) || defined(MVAPICH2_NUMVERSION) || defined(I_MPI_NUMVERSION) 156a7886beaSBarry Smith # error "PETSc was configured with MPICH but now appears to be compiling using a non-MPICH mpi.h" 157ca70f86eSJed Brown # elif (MPICH_NUMVERSION/100000 != PETSC_HAVE_MPICH_NUMVERSION/100000) || (MPICH_NUMVERSION%100000/1000 < PETSC_HAVE_MPICH_NUMVERSION%100000/1000) 158a7886beaSBarry Smith # error "PETSc was configured with one MPICH mpi.h version but now appears to be compiling using a different MPICH mpi.h version" 159a7886beaSBarry Smith # endif 160a7886beaSBarry Smith #elif defined(PETSC_HAVE_OMPI_MAJOR_VERSION) 161a7886beaSBarry Smith # if !defined(OMPI_MAJOR_VERSION) 162a7886beaSBarry Smith # error "PETSc was configured with OpenMPI but now appears to be compiling using a non-OpenMPI mpi.h" 163ca70f86eSJed Brown # elif (OMPI_MAJOR_VERSION != PETSC_HAVE_OMPI_MAJOR_VERSION) || (OMPI_MINOR_VERSION != PETSC_HAVE_OMPI_MINOR_VERSION) || (OMPI_RELEASE_VERSION < PETSC_HAVE_OMPI_RELEASE_VERSION) 164c3ac57cfSSatish Balay # error "PETSc was configured with one OpenMPI mpi.h version but now appears to be compiling using a different OpenMPI mpi.h version" 165a7886beaSBarry Smith # endif 16641f4af4cSSatish Balay #elif defined(OMPI_MAJOR_VERSION) || defined(MPICH_NUMVERSION) 16741f4af4cSSatish Balay # error "PETSc was configured with undetermined MPI - but now appears to be compiling using either of OpenMPI or a MPICH variant" 168a7886beaSBarry Smith #endif 169a7886beaSBarry Smith 170a7886beaSBarry Smith /* 1712981ebdbSBarry Smith Need to put stdio.h AFTER mpi.h for MPICH2 with C++ compiler 172d382aafbSBarry Smith see the top of mpicxx.h in the MPICH2 distribution. 173d382aafbSBarry Smith */ 174d382aafbSBarry Smith #include <stdio.h> 175d382aafbSBarry Smith 176d382aafbSBarry Smith /* MSMPI on 32bit windows requires this yukky hack - that breaks MPI standard compliance */ 177d382aafbSBarry Smith #if !defined(MPIAPI) 178d382aafbSBarry Smith #define MPIAPI 179d382aafbSBarry Smith #endif 180d382aafbSBarry Smith 1811cc8b206SBarry Smith /* 1821cc8b206SBarry Smith Support for Clang (>=3.2) matching type tag arguments with void* buffer types. 1831cc8b206SBarry Smith This allows the compiler to detect cases where the MPI datatype argument passed to a MPI routine 1841cc8b206SBarry Smith does not match the actual type of the argument being passed in 1851cc8b206SBarry Smith */ 186c5e4d11fSDmitry Karpeev #if defined(__has_attribute) && defined(works_with_const_which_is_not_true) 187894dd566SJed Brown # if __has_attribute(argument_with_type_tag) && __has_attribute(pointer_with_type_tag) && __has_attribute(type_tag_for_datatype) 188894dd566SJed Brown # define PetscAttrMPIPointerWithType(bufno,typeno) __attribute__((pointer_with_type_tag(MPI,bufno,typeno))) 1898ad47952SJed Brown # define PetscAttrMPITypeTag(type) __attribute__((type_tag_for_datatype(MPI,type))) 1908ad47952SJed Brown # define PetscAttrMPITypeTagLayoutCompatible(type) __attribute__((type_tag_for_datatype(MPI,type,layout_compatible))) 191894dd566SJed Brown # endif 192894dd566SJed Brown #endif 193894dd566SJed Brown #if !defined(PetscAttrMPIPointerWithType) 194894dd566SJed Brown # define PetscAttrMPIPointerWithType(bufno,typeno) 1958ad47952SJed Brown # define PetscAttrMPITypeTag(type) 1968ad47952SJed Brown # define PetscAttrMPITypeTagLayoutCompatible(type) 197894dd566SJed Brown #endif 198b3506946SBarry Smith 199d382aafbSBarry Smith /*MC 2001957e957SBarry Smith PetscErrorCode - datatype used for return error code from almost all PETSc functions 201d382aafbSBarry Smith 202d382aafbSBarry Smith Level: beginner 203d382aafbSBarry Smith 204d382aafbSBarry Smith .seealso: CHKERRQ, SETERRQ 205d382aafbSBarry Smith M*/ 206d382aafbSBarry Smith typedef int PetscErrorCode; 207d382aafbSBarry Smith 208d382aafbSBarry Smith /*MC 209d382aafbSBarry Smith 210503cfb0cSBarry Smith PetscClassId - A unique id used to identify each PETSc class. 211d382aafbSBarry Smith 212e28ce29aSPatrick Sanan Notes: 213e28ce29aSPatrick Sanan Use PetscClassIdRegister() to obtain a new value for a new class being created. Usually 2141957e957SBarry Smith XXXInitializePackage() calls it for each class it defines. 2151957e957SBarry Smith 216e28ce29aSPatrick Sanan Developer Notes: 217e28ce29aSPatrick Sanan Internal integer stored in the _p_PetscObject data structure. 2181957e957SBarry Smith These are all computed by an offset from the lowest one, PETSC_SMALLEST_CLASSID. 2191957e957SBarry Smith 2201957e957SBarry Smith Level: developer 221d382aafbSBarry Smith 2220700a824SBarry Smith .seealso: PetscClassIdRegister(), PetscLogEventRegister(), PetscHeaderCreate() 223d382aafbSBarry Smith M*/ 2240700a824SBarry Smith typedef int PetscClassId; 225d382aafbSBarry Smith 226d382aafbSBarry Smith 227d382aafbSBarry Smith /*MC 228d382aafbSBarry Smith PetscMPIInt - datatype used to represent 'int' parameters to MPI functions. 229d382aafbSBarry Smith 230d382aafbSBarry Smith Level: intermediate 231d382aafbSBarry Smith 232e28ce29aSPatrick Sanan Notes: 233e28ce29aSPatrick Sanan usually this is the same as PetscInt, but if PETSc was built with --with-64-bit-indices but 234e28ce29aSPatrick Sanan standard C/Fortran integers are 32 bit then this is NOT the same as PetscInt; it remains 32 bit. 235d382aafbSBarry Smith 2364dc2109aSBarry Smith PetscMPIIntCast(a,&b) checks if the given PetscInt a will fit in a PetscMPIInt, if not it 2372981ebdbSBarry Smith generates a PETSC_ERR_ARG_OUTOFRANGE error. 238d382aafbSBarry Smith 2391cc8b206SBarry Smith .seealso: PetscBLASInt, PetscInt, PetscMPIIntCast() 240d382aafbSBarry Smith 241d382aafbSBarry Smith M*/ 242d382aafbSBarry Smith typedef int PetscMPIInt; 243d382aafbSBarry Smith 244d382aafbSBarry Smith /*MC 245d382aafbSBarry Smith PetscEnum - datatype used to pass enum types within PETSc functions. 246d382aafbSBarry Smith 247d382aafbSBarry Smith Level: intermediate 248d382aafbSBarry Smith 249d382aafbSBarry Smith .seealso: PetscOptionsGetEnum(), PetscOptionsEnum(), PetscBagRegisterEnum() 250d382aafbSBarry Smith M*/ 251d382aafbSBarry Smith typedef enum { ENUM_DUMMY } PetscEnum; 2525a576424SJed Brown PETSC_EXTERN MPI_Datatype MPIU_ENUM PetscAttrMPITypeTag(PetscEnum); 253d382aafbSBarry Smith 254fab38c73SJed Brown #if defined(PETSC_HAVE_STDINT_H) 255fab38c73SJed Brown #include <stdint.h> 256fab38c73SJed Brown #endif 257a05e1a72SSatish Balay #if defined (PETSC_HAVE_INTTYPES_H) 25813e758fdSSatish Balay #define __STDC_FORMAT_MACROS /* required for using PRId64 from c++ */ 259a05e1a72SSatish Balay #include <inttypes.h> 26037354ed4SSatish Balay # if !defined(PRId64) 26137354ed4SSatish Balay # define PRId64 "ld" 26237354ed4SSatish Balay # endif 263a05e1a72SSatish Balay #endif 264fab38c73SJed Brown 26599a4b90dSDave May typedef short PetscShort; 26699a4b90dSDave May typedef char PetscChar; 26799a4b90dSDave May typedef float PetscFloat; 26899a4b90dSDave May 269d382aafbSBarry Smith /*MC 270bb42e86aSJed Brown PetscInt - PETSc type that represents an integer, used primarily to 271e28ce29aSPatrick Sanan represent size of arrays and indexing into arrays. Its size can be configured with the option --with-64-bit-indices to be either 32-bit (default) or 64-bit. 272d382aafbSBarry Smith 273e28ce29aSPatrick Sanan Notes: 274e28ce29aSPatrick Sanan For MPI calls that require datatypes, use MPIU_INT as the datatype for PetscInt. It will automatically work correctly regardless of the size of PetscInt. 275390e1bf2SBarry Smith 276e28ce29aSPatrick Sanan Level: beginner 277390e1bf2SBarry Smith 278e28ce29aSPatrick Sanan .seealso: PetscBLASInt, PetscMPIInt, PetscReal, PetscScalar, PetscComplex, PetscInt, MPIU_REAL, MPIU_SCALAR, MPIU_COMPLEX, MPIU_INT 279d382aafbSBarry Smith M*/ 280e28ce29aSPatrick Sanan 281e28ce29aSPatrick Sanan /*MC 282e28ce29aSPatrick Sanan MPIU_INT - MPI datatype corresponding to PetscInt 283e28ce29aSPatrick Sanan 284e28ce29aSPatrick Sanan Notes: 285e28ce29aSPatrick Sanan In MPI calls that require an MPI datatype that matches a PetscInt or array of PetscInt values, pass this value. 286e28ce29aSPatrick Sanan 287e28ce29aSPatrick Sanan Level: beginner 288e28ce29aSPatrick Sanan 289e28ce29aSPatrick Sanan .seealso: PetscReal, PetscScalar, PetscComplex, PetscInt, MPIU_REAL, MPIU_SCALAR, MPIU_COMPLEX 290e28ce29aSPatrick Sanan M*/ 291e28ce29aSPatrick Sanan 29237354ed4SSatish Balay #if defined(PETSC_HAVE_STDINT_H) && defined(PETSC_HAVE_INTTYPES_H) && defined(PETSC_HAVE_MPI_INT64_T) /* MPI_INT64_T is not guaranteed to be a macro */ 293bafee8b4SSatish Balay typedef int64_t PetscInt64; 294bd84f1cfSSatish Balay # define MPIU_INT64 MPI_INT64_T 295a05e1a72SSatish Balay # define PetscInt64_FMT PRId64 296fab38c73SJed Brown #elif (PETSC_SIZEOF_LONG_LONG == 8) 297bafee8b4SSatish Balay typedef long long PetscInt64; 298bd84f1cfSSatish Balay # define MPIU_INT64 MPI_LONG_LONG_INT 299a05e1a72SSatish Balay # define PetscInt64_FMT "lld" 300f505b413SSatish Balay #elif defined(PETSC_HAVE___INT64) 301bafee8b4SSatish Balay typedef __int64 PetscInt64; 302bd84f1cfSSatish Balay # define MPIU_INT64 MPI_INT64_T 303a05e1a72SSatish Balay # define PetscInt64_FMT "ld" 304236ed0a3SSatish Balay #else 305bafee8b4SSatish Balay #error "cannot determine PetscInt64 type" 306236ed0a3SSatish Balay #endif 307b7b8f77aSBarry Smith 308b7b8f77aSBarry Smith #if PETSC_SIZEOF_VOID_P == 4 309b7b8f77aSBarry Smith #define MPIU_FORTRANADDR MPI_INT 310b7b8f77aSBarry Smith #else 311b7b8f77aSBarry Smith #define MPIU_FORTRANADDR MPIU_INT64 312b7b8f77aSBarry Smith #endif 313b7b8f77aSBarry Smith 314d382aafbSBarry Smith #if defined(PETSC_USE_64BIT_INDICES) 315bafee8b4SSatish Balay typedef PetscInt64 PetscInt; 316bd84f1cfSSatish Balay #define MPIU_INT MPIU_INT64 317a05e1a72SSatish Balay #define PetscInt_FMT PetscInt64_FMT 318d382aafbSBarry Smith #else 319d382aafbSBarry Smith typedef int PetscInt; 320d382aafbSBarry Smith #define MPIU_INT MPI_INT 321a05e1a72SSatish Balay #define PetscInt_FMT "d" 322d382aafbSBarry Smith #endif 323d382aafbSBarry Smith 324702bc34aSSatish Balay /*MC 325702bc34aSSatish Balay PetscBLASInt - datatype used to represent 'int' parameters to BLAS/LAPACK functions. 326702bc34aSSatish Balay 327e28ce29aSPatrick Sanan Notes: 328e28ce29aSPatrick Sanan Usually this is the same as PetscInt, but if PETSc was built with --with-64-bit-indices but 329702bc34aSSatish Balay standard C/Fortran integers are 32 bit then this is NOT the same as PetscInt it remains 32 bit 330702bc34aSSatish Balay (except on very rare BLAS/LAPACK implementations that support 64 bit integers see the note below). 331702bc34aSSatish Balay 332c5df96a5SBarry Smith PetscErrorCode PetscBLASIntCast(a,&b) checks if the given PetscInt a will fit in a PetscBLASInt, if not it 3332981ebdbSBarry Smith generates a PETSC_ERR_ARG_OUTOFRANGE error 334702bc34aSSatish Balay 335e28ce29aSPatrick Sanan Installation Notes: 336e28ce29aSPatrick Sanan The 64bit versions of MATLAB ship with BLAS and LAPACK that use 64 bit integers for sizes etc, 337702bc34aSSatish Balay if you run ./configure with the option 338149a18a2SBarry Smith --with-blaslapack-lib=[/Applications/MATLAB_R2010b.app/bin/maci64/libmwblas.dylib,/Applications/MATLAB_R2010b.app/bin/maci64/libmwlapack.dylib] 3392981ebdbSBarry Smith but you need to also use --known-64-bit-blas-indices. 3402981ebdbSBarry Smith 341390e1bf2SBarry Smith MKL also ships with 64 bit integer versions of the BLAS and LAPACK, if you select those you must also ./configure with 342390e1bf2SBarry Smith --known-64-bit-blas-indices 343390e1bf2SBarry Smith 344390e1bf2SBarry Smith OpenBLAS can also be built to use 64 bit integers. The ./configure options --download-openblas -download-openblas-64-bit-blas-indices 345390e1bf2SBarry Smith will build a 64 bit integer version 3462981ebdbSBarry Smith 347e28ce29aSPatrick Sanan Developer Notes: 348e28ce29aSPatrick Sanan Eventually ./configure should automatically determine the size of the integers used by BLAS/LAPACK. 349702bc34aSSatish Balay 350702bc34aSSatish Balay External packages such as hypre, ML, SuperLU etc do not provide any support for passing 64 bit integers to BLAS/LAPACK so cannot 351702bc34aSSatish Balay be used with PETSc if you have set PetscBLASInt to long int. 352702bc34aSSatish Balay 353e28ce29aSPatrick Sanan Level: intermediate 354e28ce29aSPatrick Sanan 3551cc8b206SBarry Smith .seealso: PetscMPIInt, PetscInt, PetscBLASIntCast() 356702bc34aSSatish Balay 357702bc34aSSatish Balay M*/ 358702bc34aSSatish Balay #if defined(PETSC_HAVE_64BIT_BLAS_INDICES) 359bafee8b4SSatish Balay typedef PetscInt64 PetscBLASInt; 360702bc34aSSatish Balay #else 361702bc34aSSatish Balay typedef int PetscBLASInt; 362702bc34aSSatish Balay #endif 363702bc34aSSatish Balay 364503cfb0cSBarry Smith /* 365503cfb0cSBarry Smith For the rare cases when one needs to send a size_t object with MPI 366503cfb0cSBarry Smith */ 367d382aafbSBarry Smith #if (PETSC_SIZEOF_SIZE_T) == (PETSC_SIZEOF_INT) 368adcec1e5SJed Brown #define MPIU_SIZE_T MPI_UNSIGNED 369d382aafbSBarry Smith #elif (PETSC_SIZEOF_SIZE_T) == (PETSC_SIZEOF_LONG) 370adcec1e5SJed Brown #define MPIU_SIZE_T MPI_UNSIGNED_LONG 371d382aafbSBarry Smith #elif (PETSC_SIZEOF_SIZE_T) == (PETSC_SIZEOF_LONG_LONG) 372adcec1e5SJed Brown #define MPIU_SIZE_T MPI_UNSIGNED_LONG_LONG 373d382aafbSBarry Smith #else 374d382aafbSBarry Smith #error "Unknown size for size_t! Send us a bugreport at petsc-maint@mcs.anl.gov" 375d382aafbSBarry Smith #endif 376d382aafbSBarry Smith 377d382aafbSBarry Smith /* 378d382aafbSBarry Smith You can use PETSC_STDOUT as a replacement of stdout. You can also change 379d382aafbSBarry Smith the value of PETSC_STDOUT to redirect all standard output elsewhere 380d382aafbSBarry Smith */ 381014dd563SJed Brown PETSC_EXTERN FILE* PETSC_STDOUT; 382d382aafbSBarry Smith 383d382aafbSBarry Smith /* 384d382aafbSBarry Smith You can use PETSC_STDERR as a replacement of stderr. You can also change 385d382aafbSBarry Smith the value of PETSC_STDERR to redirect all standard error elsewhere 386d382aafbSBarry Smith */ 387014dd563SJed Brown PETSC_EXTERN FILE* PETSC_STDERR; 388d382aafbSBarry Smith 389d382aafbSBarry Smith /*MC 390d382aafbSBarry Smith PetscUnlikely - hints the compiler that the given condition is usually FALSE 391d382aafbSBarry Smith 392d382aafbSBarry Smith Synopsis: 393aaa7dc30SBarry Smith #include <petscsys.h> 394ace3abfcSBarry Smith PetscBool PetscUnlikely(PetscBool cond) 395d382aafbSBarry Smith 396eca87e8dSBarry Smith Not Collective 397eca87e8dSBarry Smith 398d382aafbSBarry Smith Input Parameters: 399d382aafbSBarry Smith . cond - condition or expression 400d382aafbSBarry Smith 401e28ce29aSPatrick Sanan Notes: 402e28ce29aSPatrick Sanan This returns the same truth value, it is only a hint to compilers that the resulting 403d382aafbSBarry Smith branch is unlikely. 404d382aafbSBarry Smith 405d382aafbSBarry Smith Level: advanced 406d382aafbSBarry Smith 407d382aafbSBarry Smith .seealso: PetscLikely(), CHKERRQ 408d382aafbSBarry Smith M*/ 409d382aafbSBarry Smith 410d382aafbSBarry Smith /*MC 411d382aafbSBarry Smith PetscLikely - hints the compiler that the given condition is usually TRUE 412d382aafbSBarry Smith 413d382aafbSBarry Smith Synopsis: 414aaa7dc30SBarry Smith #include <petscsys.h> 41523072422SBarry Smith PetscBool PetscLikely(PetscBool cond) 416d382aafbSBarry Smith 417eca87e8dSBarry Smith Not Collective 418eca87e8dSBarry Smith 419d382aafbSBarry Smith Input Parameters: 420d382aafbSBarry Smith . cond - condition or expression 421d382aafbSBarry Smith 422e28ce29aSPatrick Sanan Notes: 423e28ce29aSPatrick Sanan This returns the same truth value, it is only a hint to compilers that the resulting 424d382aafbSBarry Smith branch is likely. 425d382aafbSBarry Smith 426d382aafbSBarry Smith Level: advanced 427d382aafbSBarry Smith 428d382aafbSBarry Smith .seealso: PetscUnlikely() 429d382aafbSBarry Smith M*/ 430d382aafbSBarry Smith #if defined(PETSC_HAVE_BUILTIN_EXPECT) 431d382aafbSBarry Smith # define PetscUnlikely(cond) __builtin_expect(!!(cond),0) 432d382aafbSBarry Smith # define PetscLikely(cond) __builtin_expect(!!(cond),1) 433d382aafbSBarry Smith #else 434cd3f4ce9SJed Brown # define PetscUnlikely(cond) (cond) 435cd3f4ce9SJed Brown # define PetscLikely(cond) (cond) 436d382aafbSBarry Smith #endif 437d382aafbSBarry Smith 438d382aafbSBarry Smith /* 439d382aafbSBarry Smith Declare extern C stuff after including external header files 440d382aafbSBarry Smith */ 441d382aafbSBarry Smith 442d382aafbSBarry Smith 443d382aafbSBarry Smith /* 444d382aafbSBarry Smith Basic PETSc constants 445d382aafbSBarry Smith */ 446d382aafbSBarry Smith 447d382aafbSBarry Smith /*E 448ace3abfcSBarry Smith PetscBool - Logical variable. Actually an int in C and a logical in Fortran. 449d382aafbSBarry Smith 450d382aafbSBarry Smith Level: beginner 451d382aafbSBarry Smith 452e28ce29aSPatrick Sanan Developer Note: 453e28ce29aSPatrick Sanan Why have PetscBool , why not use bool in C? The problem is that K and R C, C99 and C++ all have different mechanisms for 45434e82e7dSBarry Smith boolean values. It is not easy to have a simple macro that that will work properly in all circumstances with all three mechanisms. 45534e82e7dSBarry Smith 4561cc8b206SBarry Smith .seealso: PETSC_TRUE, PETSC_FALSE, PetscNot() 457d382aafbSBarry Smith E*/ 458ace3abfcSBarry Smith typedef enum { PETSC_FALSE,PETSC_TRUE } PetscBool; 4596a6fc655SJed Brown PETSC_EXTERN const char *const PetscBools[]; 4605a576424SJed Brown PETSC_EXTERN MPI_Datatype MPIU_BOOL PetscAttrMPITypeTag(PetscBool); 46170b3c8c7SBarry Smith 4628b49ba18SBarry Smith /* 463390e1bf2SBarry Smith Defines elementary mathematics functions and constants. 4648b49ba18SBarry Smith */ 4658b49ba18SBarry Smith #include <petscmath.h> 4668b49ba18SBarry Smith 46770b3c8c7SBarry Smith /*E 46870b3c8c7SBarry Smith PetscCopyMode - Determines how an array passed to certain functions is copied or retained 46970b3c8c7SBarry Smith 47070b3c8c7SBarry Smith Level: beginner 47170b3c8c7SBarry Smith 47270b3c8c7SBarry Smith $ PETSC_COPY_VALUES - the array values are copied into new space, the user is free to reuse or delete the passed in array 47370b3c8c7SBarry Smith $ PETSC_OWN_POINTER - the array values are NOT copied, the object takes ownership of the array and will free it later, the user cannot change or 47470b3c8c7SBarry Smith $ delete the array. The array MUST have been obtained with PetscMalloc(). Hence this mode cannot be used in Fortran. 47570b3c8c7SBarry Smith $ PETSC_USE_POINTER - the array values are NOT copied, the object uses the array but does NOT take ownership of the array. The user cannot use 47670b3c8c7SBarry Smith the array but the user must delete the array after the object is destroyed. 47770b3c8c7SBarry Smith 47870b3c8c7SBarry Smith E*/ 47970b3c8c7SBarry Smith typedef enum { PETSC_COPY_VALUES, PETSC_OWN_POINTER, PETSC_USE_POINTER} PetscCopyMode; 4806a6fc655SJed Brown PETSC_EXTERN const char *const PetscCopyModes[]; 481d382aafbSBarry Smith 482d382aafbSBarry Smith /*MC 483ace3abfcSBarry Smith PETSC_FALSE - False value of PetscBool 484d382aafbSBarry Smith 485d382aafbSBarry Smith Level: beginner 486d382aafbSBarry Smith 487e28ce29aSPatrick Sanan Note: 488e28ce29aSPatrick Sanan Zero integer 489d382aafbSBarry Smith 490ace3abfcSBarry Smith .seealso: PetscBool, PETSC_TRUE 491d382aafbSBarry Smith M*/ 492d382aafbSBarry Smith 493d382aafbSBarry Smith /*MC 494ace3abfcSBarry Smith PETSC_TRUE - True value of PetscBool 495d382aafbSBarry Smith 496d382aafbSBarry Smith Level: beginner 497d382aafbSBarry Smith 498e28ce29aSPatrick Sanan Note: 499e28ce29aSPatrick Sanan Nonzero integer 500d382aafbSBarry Smith 501ace3abfcSBarry Smith .seealso: PetscBool, PETSC_FALSE 502d382aafbSBarry Smith M*/ 503d382aafbSBarry Smith 504d382aafbSBarry Smith /*MC 5050298fd71SBarry Smith PETSC_IGNORE - same as NULL, means PETSc will ignore this argument 506d382aafbSBarry Smith 507d382aafbSBarry Smith Level: beginner 508d382aafbSBarry Smith 509e28ce29aSPatrick Sanan Note: 510e28ce29aSPatrick Sanan Accepted by many PETSc functions to not set a parameter and instead use 511d382aafbSBarry Smith some default 512d382aafbSBarry Smith 513e28ce29aSPatrick Sanan Fortran Notes: 514e28ce29aSPatrick Sanan This macro does not exist in Fortran; you must use PETSC_NULL_INTEGER, 515d382aafbSBarry Smith PETSC_NULL_DOUBLE_PRECISION etc 516d382aafbSBarry Smith 517e28ce29aSPatrick Sanan .seealso: PETSC_DECIDE, PETSC_DEFAULT, PETSC_DETERMINE 518d382aafbSBarry Smith 519d382aafbSBarry Smith M*/ 5200298fd71SBarry Smith #define PETSC_IGNORE NULL 521d382aafbSBarry Smith 522c528d872SBarry Smith /* This is deprecated */ 523c528d872SBarry Smith #define PETSC_NULL NULL 524c528d872SBarry Smith 525d382aafbSBarry Smith /*MC 526557d4da8SBarry Smith PETSC_DECIDE - standard way of passing in integer or floating point parameter 527557d4da8SBarry Smith where you wish PETSc to use the default. 528557d4da8SBarry Smith 529557d4da8SBarry Smith Level: beginner 530557d4da8SBarry Smith 531e28ce29aSPatrick Sanan .seealso: PETSC_DEFAULT, PETSC_IGNORE, PETSC_DETERMINE 532557d4da8SBarry Smith 533557d4da8SBarry Smith M*/ 534557d4da8SBarry Smith #define PETSC_DECIDE -1 535557d4da8SBarry Smith 536557d4da8SBarry Smith /*MC 537d382aafbSBarry Smith PETSC_DETERMINE - standard way of passing in integer or floating point parameter 538d382aafbSBarry Smith where you wish PETSc to compute the required value. 539d382aafbSBarry Smith 540d382aafbSBarry Smith Level: beginner 541d382aafbSBarry Smith 542e28ce29aSPatrick Sanan Developer Note: 543e28ce29aSPatrick Sanan I would like to use const PetscInt PETSC_DETERMINE = PETSC_DECIDE; but for 544557d4da8SBarry Smith some reason this is not allowed by the standard even though PETSC_DECIDE is a constant value. 545557d4da8SBarry Smith 5460298fd71SBarry Smith .seealso: PETSC_DECIDE, PETSC_DEFAULT, PETSC_IGNORE, VecSetSizes() 547d382aafbSBarry Smith 548d382aafbSBarry Smith M*/ 549d382aafbSBarry Smith #define PETSC_DETERMINE PETSC_DECIDE 550d382aafbSBarry Smith 551d382aafbSBarry Smith /*MC 552557d4da8SBarry Smith PETSC_DEFAULT - standard way of passing in integer or floating point parameter 553557d4da8SBarry Smith where you wish PETSc to use the default. 554557d4da8SBarry Smith 555557d4da8SBarry Smith Level: beginner 556557d4da8SBarry Smith 557e28ce29aSPatrick Sanan Fortran Notes: 558e28ce29aSPatrick Sanan You need to use PETSC_DEFAULT_INTEGER or PETSC_DEFAULT_REAL. 559557d4da8SBarry Smith 5600298fd71SBarry Smith .seealso: PETSC_DECIDE, PETSC_IGNORE, PETSC_DETERMINE 561557d4da8SBarry Smith 562557d4da8SBarry Smith M*/ 563557d4da8SBarry Smith #define PETSC_DEFAULT -2 564557d4da8SBarry Smith 565557d4da8SBarry Smith /*MC 566d382aafbSBarry Smith PETSC_COMM_WORLD - the equivalent of the MPI_COMM_WORLD communicator which represents 567d382aafbSBarry Smith all the processs that PETSc knows about. 568d382aafbSBarry Smith 569d382aafbSBarry Smith Level: beginner 570d382aafbSBarry Smith 571e28ce29aSPatrick Sanan Notes: 572e28ce29aSPatrick Sanan By default PETSC_COMM_WORLD and MPI_COMM_WORLD are identical unless you wish to 573d382aafbSBarry Smith run PETSc on ONLY a subset of MPI_COMM_WORLD. In that case create your new (smaller) 574d382aafbSBarry Smith communicator, call it, say comm, and set PETSC_COMM_WORLD = comm BEFORE calling 575a990b902SBarry Smith PetscInitialize(), but after MPI_Init() has been called. 576a990b902SBarry Smith 577a990b902SBarry Smith The value of PETSC_COMM_WORLD should never be USED/accessed before PetscInitialize() 578a990b902SBarry Smith is called because it may not have a valid value yet. 579d382aafbSBarry Smith 580d382aafbSBarry Smith .seealso: PETSC_COMM_SELF 581d382aafbSBarry Smith 582d382aafbSBarry Smith M*/ 583014dd563SJed Brown PETSC_EXTERN MPI_Comm PETSC_COMM_WORLD; 584d382aafbSBarry Smith 585d382aafbSBarry Smith /*MC 586503cfb0cSBarry Smith PETSC_COMM_SELF - This is always MPI_COMM_SELF 587d382aafbSBarry Smith 588d382aafbSBarry Smith Level: beginner 589d382aafbSBarry Smith 590e28ce29aSPatrick Sanan Notes: 591e28ce29aSPatrick Sanan Do not USE/access or set this variable before PetscInitialize() has been called. 592a990b902SBarry Smith 593d382aafbSBarry Smith .seealso: PETSC_COMM_WORLD 594d382aafbSBarry Smith 595d382aafbSBarry Smith M*/ 596d382aafbSBarry Smith #define PETSC_COMM_SELF MPI_COMM_SELF 597d382aafbSBarry Smith 598d6f2c3cbSBarry Smith PETSC_EXTERN PetscBool PetscBeganMPI; 599014dd563SJed Brown PETSC_EXTERN PetscBool PetscInitializeCalled; 600014dd563SJed Brown PETSC_EXTERN PetscBool PetscFinalizeCalled; 601014dd563SJed Brown PETSC_EXTERN PetscBool PetscCUSPSynchronize; 6024cf1874eSKarl Rupp PETSC_EXTERN PetscBool PetscViennaCLSynchronize; 60382f73ecaSAlejandro Lamas Daviña PETSC_EXTERN PetscBool PetscCUDASynchronize; 604d382aafbSBarry Smith 605014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSetHelpVersionFunctions(PetscErrorCode (*)(MPI_Comm),PetscErrorCode (*)(MPI_Comm)); 606014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscCommDuplicate(MPI_Comm,MPI_Comm*,int*); 607014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscCommDestroy(MPI_Comm*); 608d382aafbSBarry Smith 609d382aafbSBarry Smith /*MC 61095dccacaSBarry Smith PetscMalloc - Allocates memory, One should use PetscNew(), PetscMalloc1() or PetscCalloc1() usually instead of this 611d382aafbSBarry Smith 612eca87e8dSBarry Smith Synopsis: 613aaa7dc30SBarry Smith #include <petscsys.h> 614eca87e8dSBarry Smith PetscErrorCode PetscMalloc(size_t m,void **result) 615eca87e8dSBarry Smith 616eca87e8dSBarry Smith Not Collective 617eca87e8dSBarry Smith 618d382aafbSBarry Smith Input Parameter: 619d382aafbSBarry Smith . m - number of bytes to allocate 620d382aafbSBarry Smith 621d382aafbSBarry Smith Output Parameter: 622d382aafbSBarry Smith . result - memory allocated 623d382aafbSBarry Smith 624d382aafbSBarry Smith Level: beginner 625d382aafbSBarry Smith 62649d7da52SJed Brown Notes: 62749d7da52SJed Brown Memory is always allocated at least double aligned 628d382aafbSBarry Smith 62949d7da52SJed Brown It is safe to allocate size 0 and pass the resulting pointer (which may or may not be NULL) to PetscFree(). 630d382aafbSBarry Smith 631d382aafbSBarry Smith .seealso: PetscFree(), PetscNew() 632d382aafbSBarry Smith 633d382aafbSBarry Smith Concepts: memory allocation 634d382aafbSBarry Smith 635d382aafbSBarry Smith M*/ 63649d7da52SJed Brown #define PetscMalloc(a,b) ((*PetscTrMalloc)((a),__LINE__,PETSC_FUNCTION_NAME,__FILE__,(void**)(b))) 637d382aafbSBarry Smith 638d382aafbSBarry Smith /*MC 6393221ece2SMatthew G. Knepley PetscRealloc - Rellocates memory 6403221ece2SMatthew G. Knepley 6413221ece2SMatthew G. Knepley Synopsis: 6423221ece2SMatthew G. Knepley #include <petscsys.h> 6433221ece2SMatthew G. Knepley PetscErrorCode PetscRealloc(size_t m,void **result) 6443221ece2SMatthew G. Knepley 6453221ece2SMatthew G. Knepley Not Collective 6463221ece2SMatthew G. Knepley 6473221ece2SMatthew G. Knepley Input Parameters: 6483221ece2SMatthew G. Knepley + m - number of bytes to allocate 6493221ece2SMatthew G. Knepley - result - initial memory allocated 6503221ece2SMatthew G. Knepley 6513221ece2SMatthew G. Knepley Output Parameter: 6523221ece2SMatthew G. Knepley . result - new memory allocated 6533221ece2SMatthew G. Knepley 6543221ece2SMatthew G. Knepley Level: developer 6553221ece2SMatthew G. Knepley 6563221ece2SMatthew G. Knepley Notes: 6573221ece2SMatthew G. Knepley Memory is always allocated at least double aligned 6583221ece2SMatthew G. Knepley 6593221ece2SMatthew G. Knepley .seealso: PetscMalloc(), PetscFree(), PetscNew() 6603221ece2SMatthew G. Knepley 6613221ece2SMatthew G. Knepley Concepts: memory allocation 6623221ece2SMatthew G. Knepley 6633221ece2SMatthew G. Knepley M*/ 6643221ece2SMatthew G. Knepley #define PetscRealloc(a,b) ((*PetscTrRealloc)((a),__LINE__,PETSC_FUNCTION_NAME,__FILE__,(void**)(b))) 6653221ece2SMatthew G. Knepley 6663221ece2SMatthew G. Knepley /*MC 667503cfb0cSBarry Smith PetscAddrAlign - Rounds up an address to PETSC_MEMALIGN alignment 668d382aafbSBarry Smith 669d382aafbSBarry Smith Synopsis: 670aaa7dc30SBarry Smith #include <petscsys.h> 671d382aafbSBarry Smith void *PetscAddrAlign(void *addr) 672d382aafbSBarry Smith 673eca87e8dSBarry Smith Not Collective 674eca87e8dSBarry Smith 675eca87e8dSBarry Smith Input Parameters: 676eca87e8dSBarry Smith . addr - address to align (any pointer type) 677eca87e8dSBarry Smith 678d382aafbSBarry Smith Level: developer 679d382aafbSBarry Smith 680d382aafbSBarry Smith .seealso: PetscMallocAlign() 681d382aafbSBarry Smith 682d382aafbSBarry Smith Concepts: memory allocation 683d382aafbSBarry Smith M*/ 684d382aafbSBarry Smith #define PetscAddrAlign(a) (void*)((((PETSC_UINTPTR_T)(a))+(PETSC_MEMALIGN-1)) & ~(PETSC_MEMALIGN-1)) 685d382aafbSBarry Smith 686d382aafbSBarry Smith /*MC 687785e854fSJed Brown PetscMalloc1 - Allocates an array of memory aligned to PETSC_MEMALIGN 688d382aafbSBarry Smith 689eca87e8dSBarry Smith Synopsis: 690aaa7dc30SBarry Smith #include <petscsys.h> 691785e854fSJed Brown PetscErrorCode PetscMalloc1(size_t m1,type **r1) 692785e854fSJed Brown 693785e854fSJed Brown Not Collective 694785e854fSJed Brown 695785e854fSJed Brown Input Parameter: 696390e1bf2SBarry Smith . m1 - number of elements to allocate (may be zero) 697785e854fSJed Brown 698785e854fSJed Brown Output Parameter: 699785e854fSJed Brown . r1 - memory allocated in first chunk 700785e854fSJed Brown 701e28ce29aSPatrick Sanan Note: 702e28ce29aSPatrick Sanan This uses the sizeof() of the memory type requested to determine the total memory to be allocated, therefore you should not 703390e1bf2SBarry Smith multiply the number of elements requested by the sizeof() the type. For example use 704390e1bf2SBarry Smith $ PetscInt *id; 705390e1bf2SBarry Smith $ PetscMalloc1(10,&id); 706390e1bf2SBarry Smith not 707390e1bf2SBarry Smith $ PetscInt *id; 708390e1bf2SBarry Smith $ PetscMalloc1(10*sizeof(PetscInt),&id); 709390e1bf2SBarry Smith 710390e1bf2SBarry Smith Does not zero the memory allocatd, used PetscCalloc1() to obtain memory that has been zeroed. 711390e1bf2SBarry Smith 712390e1bf2SBarry Smith Level: beginner 713785e854fSJed Brown 7141795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscCalloc1(), PetscMalloc2() 715785e854fSJed Brown 716785e854fSJed Brown Concepts: memory allocation 717785e854fSJed Brown 718785e854fSJed Brown M*/ 7192553b7ecSJed Brown #define PetscMalloc1(m1,r1) PetscMallocA(1,PETSC_FALSE,__LINE__,PETSC_FUNCTION_NAME,__FILE__,(size_t)(m1)*sizeof(**(r1)),(r1)) 720785e854fSJed Brown 721785e854fSJed Brown /*MC 7221795a4d1SJed Brown PetscCalloc1 - Allocates a cleared (zeroed) array of memory aligned to PETSC_MEMALIGN 7231795a4d1SJed Brown 7241795a4d1SJed Brown Synopsis: 725aaa7dc30SBarry Smith #include <petscsys.h> 7261795a4d1SJed Brown PetscErrorCode PetscCalloc1(size_t m1,type **r1) 7271795a4d1SJed Brown 7281795a4d1SJed Brown Not Collective 7291795a4d1SJed Brown 7301795a4d1SJed Brown Input Parameter: 7311795a4d1SJed Brown . m1 - number of elements to allocate in 1st chunk (may be zero) 7321795a4d1SJed Brown 7331795a4d1SJed Brown Output Parameter: 7341795a4d1SJed Brown . r1 - memory allocated in first chunk 7351795a4d1SJed Brown 736e28ce29aSPatrick Sanan Notes: 737e28ce29aSPatrick Sanan See PetsMalloc1() for more details on usage. 738390e1bf2SBarry Smith 739390e1bf2SBarry Smith Level: beginner 7401795a4d1SJed Brown 7411795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc1(), PetscCalloc2() 7421795a4d1SJed Brown 7431795a4d1SJed Brown Concepts: memory allocation 7441795a4d1SJed Brown 7451795a4d1SJed Brown M*/ 7462553b7ecSJed Brown #define PetscCalloc1(m1,r1) PetscMallocA(1,PETSC_TRUE,__LINE__,PETSC_FUNCTION_NAME,__FILE__,(size_t)(m1)*sizeof(**(r1)),(r1)) 7471795a4d1SJed Brown 7481795a4d1SJed Brown /*MC 749dcca6d9dSJed Brown PetscMalloc2 - Allocates 2 arrays of memory both aligned to PETSC_MEMALIGN 750d382aafbSBarry Smith 751eca87e8dSBarry Smith Synopsis: 752aaa7dc30SBarry Smith #include <petscsys.h> 753dcca6d9dSJed Brown PetscErrorCode PetscMalloc2(size_t m1,type **r1,size_t m2,type **r2) 754eca87e8dSBarry Smith 755eca87e8dSBarry Smith Not Collective 756eca87e8dSBarry Smith 757d382aafbSBarry Smith Input Parameter: 758d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 759dcca6d9dSJed Brown - m2 - number of elements to allocate in 2nd chunk (may be zero) 760d382aafbSBarry Smith 761d382aafbSBarry Smith Output Parameter: 762d382aafbSBarry Smith + r1 - memory allocated in first chunk 763d382aafbSBarry Smith - r2 - memory allocated in second chunk 764d382aafbSBarry Smith 765d382aafbSBarry Smith Level: developer 766d382aafbSBarry Smith 7671795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc1(), PetscCalloc2() 768d382aafbSBarry Smith 769d382aafbSBarry Smith Concepts: memory allocation 770d382aafbSBarry Smith 771d382aafbSBarry Smith M*/ 7722553b7ecSJed Brown #define PetscMalloc2(m1,r1,m2,r2) PetscMallocA(2,PETSC_FALSE,__LINE__,PETSC_FUNCTION_NAME,__FILE__,(size_t)(m1)*sizeof(**(r1)),(r1),(size_t)(m2)*sizeof(**(r2)),(r2)) 773d382aafbSBarry Smith 774d382aafbSBarry Smith /*MC 7751795a4d1SJed Brown PetscCalloc2 - Allocates 2 cleared (zeroed) arrays of memory both aligned to PETSC_MEMALIGN 776d382aafbSBarry Smith 777eca87e8dSBarry Smith Synopsis: 778aaa7dc30SBarry Smith #include <petscsys.h> 7791795a4d1SJed Brown PetscErrorCode PetscCalloc2(size_t m1,type **r1,size_t m2,type **r2) 780eca87e8dSBarry Smith 781eca87e8dSBarry Smith Not Collective 782eca87e8dSBarry Smith 783d382aafbSBarry Smith Input Parameter: 784d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 7851795a4d1SJed Brown - m2 - number of elements to allocate in 2nd chunk (may be zero) 7861795a4d1SJed Brown 7871795a4d1SJed Brown Output Parameter: 7881795a4d1SJed Brown + r1 - memory allocated in first chunk 7891795a4d1SJed Brown - r2 - memory allocated in second chunk 7901795a4d1SJed Brown 7911795a4d1SJed Brown Level: developer 7921795a4d1SJed Brown 7931795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscCalloc1(), PetscMalloc2() 7941795a4d1SJed Brown 7951795a4d1SJed Brown Concepts: memory allocation 7961795a4d1SJed Brown M*/ 7972553b7ecSJed Brown #define PetscCalloc2(m1,r1,m2,r2) PetscMallocA(2,PETSC_TRUE,__LINE__,PETSC_FUNCTION_NAME,__FILE__,(size_t)(m1)*sizeof(**(r1)),(r1),(size_t)(m2)*sizeof(**(r2)),(r2)) 7981795a4d1SJed Brown 7991795a4d1SJed Brown /*MC 800dcca6d9dSJed Brown PetscMalloc3 - Allocates 3 arrays of memory, all aligned to PETSC_MEMALIGN 801d382aafbSBarry Smith 802d382aafbSBarry Smith Synopsis: 803aaa7dc30SBarry Smith #include <petscsys.h> 804dcca6d9dSJed Brown PetscErrorCode PetscMalloc3(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3) 805d382aafbSBarry Smith 806d382aafbSBarry Smith Not Collective 807d382aafbSBarry Smith 808d382aafbSBarry Smith Input Parameter: 809d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 810d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 811dcca6d9dSJed Brown - m3 - number of elements to allocate in 3rd chunk (may be zero) 812d382aafbSBarry Smith 813d382aafbSBarry Smith Output Parameter: 814d382aafbSBarry Smith + r1 - memory allocated in first chunk 815d382aafbSBarry Smith . r2 - memory allocated in second chunk 816d382aafbSBarry Smith - r3 - memory allocated in third chunk 817d382aafbSBarry Smith 818d382aafbSBarry Smith Level: developer 819d382aafbSBarry Smith 8201795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscCalloc3(), PetscFree3() 821d382aafbSBarry Smith 822d382aafbSBarry Smith Concepts: memory allocation 823d382aafbSBarry Smith 824d382aafbSBarry Smith M*/ 8252553b7ecSJed Brown #define PetscMalloc3(m1,r1,m2,r2,m3,r3) PetscMallocA(3,PETSC_FALSE,__LINE__,PETSC_FUNCTION_NAME,__FILE__,(size_t)(m1)*sizeof(**(r1)),(r1),(size_t)(m2)*sizeof(**(r2)),(r2),(size_t)(m3)*sizeof(**(r3)),(r3)) 826d382aafbSBarry Smith 827d382aafbSBarry Smith /*MC 8281795a4d1SJed Brown PetscCalloc3 - Allocates 3 cleared (zeroed) arrays of memory, all aligned to PETSC_MEMALIGN 829d382aafbSBarry Smith 830eca87e8dSBarry Smith Synopsis: 831aaa7dc30SBarry Smith #include <petscsys.h> 8321795a4d1SJed Brown PetscErrorCode PetscCalloc3(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3) 833eca87e8dSBarry Smith 834eca87e8dSBarry Smith Not Collective 835eca87e8dSBarry Smith 836d382aafbSBarry Smith Input Parameter: 837d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 838d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 8391795a4d1SJed Brown - m3 - number of elements to allocate in 3rd chunk (may be zero) 8401795a4d1SJed Brown 8411795a4d1SJed Brown Output Parameter: 8421795a4d1SJed Brown + r1 - memory allocated in first chunk 8431795a4d1SJed Brown . r2 - memory allocated in second chunk 8441795a4d1SJed Brown - r3 - memory allocated in third chunk 8451795a4d1SJed Brown 8461795a4d1SJed Brown Level: developer 8471795a4d1SJed Brown 8481795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscCalloc2(), PetscMalloc3(), PetscFree3() 8491795a4d1SJed Brown 8501795a4d1SJed Brown Concepts: memory allocation 8511795a4d1SJed Brown M*/ 8522553b7ecSJed Brown #define PetscCalloc3(m1,r1,m2,r2,m3,r3) PetscMallocA(3,PETSC_TRUE,__LINE__,PETSC_FUNCTION_NAME,__FILE__,(size_t)(m1)*sizeof(**(r1)),(r1),(size_t)(m2)*sizeof(**(r2)),(r2),(size_t)(m3)*sizeof(**(r3)),(r3)) 8531795a4d1SJed Brown 8541795a4d1SJed Brown /*MC 855dcca6d9dSJed Brown PetscMalloc4 - Allocates 4 arrays of memory, all aligned to PETSC_MEMALIGN 856d382aafbSBarry Smith 857d382aafbSBarry Smith Synopsis: 858aaa7dc30SBarry Smith #include <petscsys.h> 859dcca6d9dSJed Brown PetscErrorCode PetscMalloc4(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3,size_t m4,type **r4) 860d382aafbSBarry Smith 861d382aafbSBarry Smith Not Collective 862d382aafbSBarry Smith 863d382aafbSBarry Smith Input Parameter: 864d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 865d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 866d382aafbSBarry Smith . m3 - number of elements to allocate in 3rd chunk (may be zero) 867dcca6d9dSJed Brown - m4 - number of elements to allocate in 4th chunk (may be zero) 868d382aafbSBarry Smith 869d382aafbSBarry Smith Output Parameter: 870d382aafbSBarry Smith + r1 - memory allocated in first chunk 871d382aafbSBarry Smith . r2 - memory allocated in second chunk 872d382aafbSBarry Smith . r3 - memory allocated in third chunk 873d382aafbSBarry Smith - r4 - memory allocated in fourth chunk 874d382aafbSBarry Smith 875d382aafbSBarry Smith Level: developer 876d382aafbSBarry Smith 8771795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscCalloc4(), PetscFree4() 878d382aafbSBarry Smith 879d382aafbSBarry Smith Concepts: memory allocation 880d382aafbSBarry Smith 881d382aafbSBarry Smith M*/ 8822553b7ecSJed Brown #define PetscMalloc4(m1,r1,m2,r2,m3,r3,m4,r4) PetscMallocA(4,PETSC_FALSE,__LINE__,PETSC_FUNCTION_NAME,__FILE__,(size_t)(m1)*sizeof(**(r1)),(r1),(size_t)(m2)*sizeof(**(r2)),(r2),(size_t)(m3)*sizeof(**(r3)),(r3),(size_t)(m4)*sizeof(**(r4)),(r4)) 883d382aafbSBarry Smith 884d382aafbSBarry Smith /*MC 8851795a4d1SJed Brown PetscCalloc4 - Allocates 4 cleared (zeroed) arrays of memory, all aligned to PETSC_MEMALIGN 886d382aafbSBarry Smith 887eca87e8dSBarry Smith Synopsis: 888aaa7dc30SBarry Smith #include <petscsys.h> 8891795a4d1SJed Brown PetscErrorCode PetscCalloc4(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3,size_t m4,type **r4) 890eca87e8dSBarry Smith 891eca87e8dSBarry Smith Not Collective 892eca87e8dSBarry Smith 893e28ce29aSPatrick Sanan Input Parameters: 894d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 895d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 896d382aafbSBarry Smith . m3 - number of elements to allocate in 3rd chunk (may be zero) 8971795a4d1SJed Brown - m4 - number of elements to allocate in 4th chunk (may be zero) 8981795a4d1SJed Brown 899e28ce29aSPatrick Sanan Output Parameters: 9001795a4d1SJed Brown + r1 - memory allocated in first chunk 9011795a4d1SJed Brown . r2 - memory allocated in second chunk 9021795a4d1SJed Brown . r3 - memory allocated in third chunk 9031795a4d1SJed Brown - r4 - memory allocated in fourth chunk 9041795a4d1SJed Brown 9051795a4d1SJed Brown Level: developer 9061795a4d1SJed Brown 9071795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscCalloc4(), PetscFree4() 9081795a4d1SJed Brown 9091795a4d1SJed Brown Concepts: memory allocation 9101795a4d1SJed Brown 9111795a4d1SJed Brown M*/ 9122553b7ecSJed Brown #define PetscCalloc4(m1,r1,m2,r2,m3,r3,m4,r4) PetscMallocA(4,PETSC_TRUE,__LINE__,PETSC_FUNCTION_NAME,__FILE__,(size_t)(m1)*sizeof(**(r1)),(r1),(size_t)(m2)*sizeof(**(r2)),(r2),(size_t)(m3)*sizeof(**(r3)),(r3),(size_t)(m4)*sizeof(**(r4)),(r4)) 9131795a4d1SJed Brown 9141795a4d1SJed Brown /*MC 915dcca6d9dSJed Brown PetscMalloc5 - Allocates 5 arrays of memory, all aligned to PETSC_MEMALIGN 916d382aafbSBarry Smith 917d382aafbSBarry Smith Synopsis: 918aaa7dc30SBarry Smith #include <petscsys.h> 919dcca6d9dSJed Brown PetscErrorCode PetscMalloc5(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3,size_t m4,type **r4,size_t m5,type **r5) 920d382aafbSBarry Smith 921d382aafbSBarry Smith Not Collective 922d382aafbSBarry Smith 923e28ce29aSPatrick Sanan Input Parameters: 924d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 925d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 926d382aafbSBarry Smith . m3 - number of elements to allocate in 3rd chunk (may be zero) 927d382aafbSBarry Smith . m4 - number of elements to allocate in 4th chunk (may be zero) 928dcca6d9dSJed Brown - m5 - number of elements to allocate in 5th chunk (may be zero) 929d382aafbSBarry Smith 930e28ce29aSPatrick Sanan Output Parameters: 931d382aafbSBarry Smith + r1 - memory allocated in first chunk 932d382aafbSBarry Smith . r2 - memory allocated in second chunk 933d382aafbSBarry Smith . r3 - memory allocated in third chunk 934d382aafbSBarry Smith . r4 - memory allocated in fourth chunk 935d382aafbSBarry Smith - r5 - memory allocated in fifth chunk 936d382aafbSBarry Smith 937d382aafbSBarry Smith Level: developer 938d382aafbSBarry Smith 9391795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscCalloc5(), PetscFree5() 940d382aafbSBarry Smith 941d382aafbSBarry Smith Concepts: memory allocation 942d382aafbSBarry Smith 943d382aafbSBarry Smith M*/ 9442553b7ecSJed Brown #define PetscMalloc5(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5) PetscMallocA(5,PETSC_FALSE,__LINE__,PETSC_FUNCTION_NAME,__FILE__,(size_t)(m1)*sizeof(**(r1)),(r1),(size_t)(m2)*sizeof(**(r2)),(r2),(size_t)(m3)*sizeof(**(r3)),(r3),(size_t)(m4)*sizeof(**(r4)),(r4),(size_t)(m5)*sizeof(**(r5)),(r5)) 945d382aafbSBarry Smith 946d382aafbSBarry Smith /*MC 9471795a4d1SJed Brown PetscCalloc5 - Allocates 5 cleared (zeroed) arrays of memory, all aligned to PETSC_MEMALIGN 948d382aafbSBarry Smith 949eca87e8dSBarry Smith Synopsis: 950aaa7dc30SBarry Smith #include <petscsys.h> 9511795a4d1SJed Brown PetscErrorCode PetscCalloc5(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3,size_t m4,type **r4,size_t m5,type **r5) 952eca87e8dSBarry Smith 953eca87e8dSBarry Smith Not Collective 954eca87e8dSBarry Smith 955e28ce29aSPatrick Sanan Input Parameters: 956d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 957d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 958d382aafbSBarry Smith . m3 - number of elements to allocate in 3rd chunk (may be zero) 959d382aafbSBarry Smith . m4 - number of elements to allocate in 4th chunk (may be zero) 9601795a4d1SJed Brown - m5 - number of elements to allocate in 5th chunk (may be zero) 9611795a4d1SJed Brown 962e28ce29aSPatrick Sanan Output Parameters: 9631795a4d1SJed Brown + r1 - memory allocated in first chunk 9641795a4d1SJed Brown . r2 - memory allocated in second chunk 9651795a4d1SJed Brown . r3 - memory allocated in third chunk 9661795a4d1SJed Brown . r4 - memory allocated in fourth chunk 9671795a4d1SJed Brown - r5 - memory allocated in fifth chunk 9681795a4d1SJed Brown 9691795a4d1SJed Brown Level: developer 9701795a4d1SJed Brown 9711795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc5(), PetscFree5() 9721795a4d1SJed Brown 9731795a4d1SJed Brown Concepts: memory allocation 9741795a4d1SJed Brown 9751795a4d1SJed Brown M*/ 9762553b7ecSJed Brown #define PetscCalloc5(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5) PetscMallocA(5,PETSC_TRUE,__LINE__,PETSC_FUNCTION_NAME,__FILE__,(size_t)(m1)*sizeof(**(r1)),(r1),(size_t)(m2)*sizeof(**(r2)),(r2),(size_t)(m3)*sizeof(**(r3)),(r3),(size_t)(m4)*sizeof(**(r4)),(r4),(size_t)(m5)*sizeof(**(r5)),(r5)) 977d382aafbSBarry Smith 978d382aafbSBarry Smith /*MC 979dcca6d9dSJed Brown PetscMalloc6 - Allocates 6 arrays of memory, all aligned to PETSC_MEMALIGN 980d382aafbSBarry Smith 981d382aafbSBarry Smith Synopsis: 982aaa7dc30SBarry Smith #include <petscsys.h> 983dcca6d9dSJed Brown PetscErrorCode PetscMalloc6(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3,size_t m4,type **r4,size_t m5,type **r5,size_t m6,type **r6) 984d382aafbSBarry Smith 985d382aafbSBarry Smith Not Collective 986d382aafbSBarry Smith 987e28ce29aSPatrick Sanan Input Parameters: 988d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 989d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 990d382aafbSBarry Smith . m3 - number of elements to allocate in 3rd chunk (may be zero) 991d382aafbSBarry Smith . m4 - number of elements to allocate in 4th chunk (may be zero) 992d382aafbSBarry Smith . m5 - number of elements to allocate in 5th chunk (may be zero) 993dcca6d9dSJed Brown - m6 - number of elements to allocate in 6th chunk (may be zero) 994d382aafbSBarry Smith 995e28ce29aSPatrick Sanan Output Parameteasr: 996d382aafbSBarry Smith + r1 - memory allocated in first chunk 997d382aafbSBarry Smith . r2 - memory allocated in second chunk 998d382aafbSBarry Smith . r3 - memory allocated in third chunk 999d382aafbSBarry Smith . r4 - memory allocated in fourth chunk 1000d382aafbSBarry Smith . r5 - memory allocated in fifth chunk 1001d382aafbSBarry Smith - r6 - memory allocated in sixth chunk 1002d382aafbSBarry Smith 1003d382aafbSBarry Smith Level: developer 1004d382aafbSBarry Smith 10051795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscCalloc6(), PetscFree3(), PetscFree4(), PetscFree5(), PetscFree6() 1006d382aafbSBarry Smith 1007d382aafbSBarry Smith Concepts: memory allocation 1008d382aafbSBarry Smith 1009d382aafbSBarry Smith M*/ 10102553b7ecSJed Brown #define PetscMalloc6(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5,m6,r6) PetscMallocA(6,PETSC_FALSE,__LINE__,PETSC_FUNCTION_NAME,__FILE__,(size_t)(m1)*sizeof(**(r1)),(r1),(size_t)(m2)*sizeof(**(r2)),(r2),(size_t)(m3)*sizeof(**(r3)),(r3),(size_t)(m4)*sizeof(**(r4)),(r4),(size_t)(m5)*sizeof(**(r5)),(r5),(size_t)(m6)*sizeof(**(r6)),(r6)) 1011d382aafbSBarry Smith 1012d382aafbSBarry Smith /*MC 10131795a4d1SJed Brown PetscCalloc6 - Allocates 6 cleared (zeroed) arrays of memory, all aligned to PETSC_MEMALIGN 1014d382aafbSBarry Smith 1015eca87e8dSBarry Smith Synopsis: 1016aaa7dc30SBarry Smith #include <petscsys.h> 10171795a4d1SJed Brown PetscErrorCode PetscCalloc6(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3,size_t m4,type **r4,size_t m5,type **r5,size_t m6,type **r6) 1018eca87e8dSBarry Smith 1019eca87e8dSBarry Smith Not Collective 1020eca87e8dSBarry Smith 1021e28ce29aSPatrick Sanan Input Parameters: 1022d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 1023d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 1024d382aafbSBarry Smith . m3 - number of elements to allocate in 3rd chunk (may be zero) 1025d382aafbSBarry Smith . m4 - number of elements to allocate in 4th chunk (may be zero) 1026d382aafbSBarry Smith . m5 - number of elements to allocate in 5th chunk (may be zero) 10271795a4d1SJed Brown - m6 - number of elements to allocate in 6th chunk (may be zero) 10281795a4d1SJed Brown 1029e28ce29aSPatrick Sanan Output Parameters: 10301795a4d1SJed Brown + r1 - memory allocated in first chunk 10311795a4d1SJed Brown . r2 - memory allocated in second chunk 10321795a4d1SJed Brown . r3 - memory allocated in third chunk 10331795a4d1SJed Brown . r4 - memory allocated in fourth chunk 10341795a4d1SJed Brown . r5 - memory allocated in fifth chunk 10351795a4d1SJed Brown - r6 - memory allocated in sixth chunk 10361795a4d1SJed Brown 10371795a4d1SJed Brown Level: developer 10381795a4d1SJed Brown 10391795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscMalloc6(), PetscFree6() 10401795a4d1SJed Brown 10411795a4d1SJed Brown Concepts: memory allocation 10421795a4d1SJed Brown M*/ 10432553b7ecSJed Brown #define PetscCalloc6(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5,m6,r6) PetscMallocA(6,PETSC_TRUE,__LINE__,PETSC_FUNCTION_NAME,__FILE__,(size_t)(m1)*sizeof(**(r1)),(r1),(size_t)(m2)*sizeof(**(r2)),(r2),(size_t)(m3)*sizeof(**(r3)),(r3),(size_t)(m4)*sizeof(**(r4)),(r4),(size_t)(m5)*sizeof(**(r5)),(r5),(size_t)(m6)*sizeof(**(r6)),(r6)) 10441795a4d1SJed Brown 10451795a4d1SJed Brown /*MC 1046dcca6d9dSJed Brown PetscMalloc7 - Allocates 7 arrays of memory, all aligned to PETSC_MEMALIGN 1047d382aafbSBarry Smith 1048d382aafbSBarry Smith Synopsis: 1049aaa7dc30SBarry Smith #include <petscsys.h> 1050dcca6d9dSJed Brown PetscErrorCode PetscMalloc7(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3,size_t m4,type **r4,size_t m5,type **r5,size_t m6,type **r6,size_t m7,type **r7) 1051d382aafbSBarry Smith 1052d382aafbSBarry Smith Not Collective 1053d382aafbSBarry Smith 1054e28ce29aSPatrick Sanan Input Parameters: 1055d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 1056d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 1057d382aafbSBarry Smith . m3 - number of elements to allocate in 3rd chunk (may be zero) 1058d382aafbSBarry Smith . m4 - number of elements to allocate in 4th chunk (may be zero) 1059d382aafbSBarry Smith . m5 - number of elements to allocate in 5th chunk (may be zero) 1060d382aafbSBarry Smith . m6 - number of elements to allocate in 6th chunk (may be zero) 1061dcca6d9dSJed Brown - m7 - number of elements to allocate in 7th chunk (may be zero) 1062d382aafbSBarry Smith 1063e28ce29aSPatrick Sanan Output Parameters: 1064d382aafbSBarry Smith + r1 - memory allocated in first chunk 1065d382aafbSBarry Smith . r2 - memory allocated in second chunk 1066d382aafbSBarry Smith . r3 - memory allocated in third chunk 1067d382aafbSBarry Smith . r4 - memory allocated in fourth chunk 1068d382aafbSBarry Smith . r5 - memory allocated in fifth chunk 1069d382aafbSBarry Smith . r6 - memory allocated in sixth chunk 1070eca87e8dSBarry Smith - r7 - memory allocated in seventh chunk 1071d382aafbSBarry Smith 1072d382aafbSBarry Smith Level: developer 1073d382aafbSBarry Smith 10741795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscCalloc7(), PetscFree7() 1075d382aafbSBarry Smith 1076d382aafbSBarry Smith Concepts: memory allocation 1077d382aafbSBarry Smith 1078d382aafbSBarry Smith M*/ 10792553b7ecSJed Brown #define PetscMalloc7(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5,m6,r6,m7,r7) PetscMallocA(7,PETSC_FALSE,__LINE__,PETSC_FUNCTION_NAME,__FILE__,(size_t)(m1)*sizeof(**(r1)),(r1),(size_t)(m2)*sizeof(**(r2)),(r2),(size_t)(m3)*sizeof(**(r3)),(r3),(size_t)(m4)*sizeof(**(r4)),(r4),(size_t)(m5)*sizeof(**(r5)),(r5),(size_t)(m6)*sizeof(**(r6)),(r6),(size_t)(m7)*sizeof(**(r7)),(r7)) 1080d382aafbSBarry Smith 1081d382aafbSBarry Smith /*MC 10821795a4d1SJed Brown PetscCalloc7 - Allocates 7 cleared (zeroed) arrays of memory, all aligned to PETSC_MEMALIGN 10831795a4d1SJed Brown 10841795a4d1SJed Brown Synopsis: 1085aaa7dc30SBarry Smith #include <petscsys.h> 10861795a4d1SJed Brown PetscErrorCode PetscCalloc7(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3,size_t m4,type **r4,size_t m5,type **r5,size_t m6,type **r6,size_t m7,type **r7) 10871795a4d1SJed Brown 10881795a4d1SJed Brown Not Collective 10891795a4d1SJed Brown 1090e28ce29aSPatrick Sanan Input Parameters: 10911795a4d1SJed Brown + m1 - number of elements to allocate in 1st chunk (may be zero) 10921795a4d1SJed Brown . m2 - number of elements to allocate in 2nd chunk (may be zero) 10931795a4d1SJed Brown . m3 - number of elements to allocate in 3rd chunk (may be zero) 10941795a4d1SJed Brown . m4 - number of elements to allocate in 4th chunk (may be zero) 10951795a4d1SJed Brown . m5 - number of elements to allocate in 5th chunk (may be zero) 10961795a4d1SJed Brown . m6 - number of elements to allocate in 6th chunk (may be zero) 10971795a4d1SJed Brown - m7 - number of elements to allocate in 7th chunk (may be zero) 10981795a4d1SJed Brown 1099e28ce29aSPatrick Sanan Output Parameters: 11001795a4d1SJed Brown + r1 - memory allocated in first chunk 11011795a4d1SJed Brown . r2 - memory allocated in second chunk 11021795a4d1SJed Brown . r3 - memory allocated in third chunk 11031795a4d1SJed Brown . r4 - memory allocated in fourth chunk 11041795a4d1SJed Brown . r5 - memory allocated in fifth chunk 11051795a4d1SJed Brown . r6 - memory allocated in sixth chunk 11061795a4d1SJed Brown - r7 - memory allocated in seventh chunk 11071795a4d1SJed Brown 11081795a4d1SJed Brown Level: developer 11091795a4d1SJed Brown 11101795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscMalloc7(), PetscFree7() 11111795a4d1SJed Brown 11121795a4d1SJed Brown Concepts: memory allocation 11131795a4d1SJed Brown M*/ 11142553b7ecSJed Brown #define PetscCalloc7(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5,m6,r6,m7,r7) PetscMallocA(7,PETSC_TRUE,__LINE__,PETSC_FUNCTION_NAME,__FILE__,(size_t)(m1)*sizeof(**(r1)),(r1),(size_t)(m2)*sizeof(**(r2)),(r2),(size_t)(m3)*sizeof(**(r3)),(r3),(size_t)(m4)*sizeof(**(r4)),(r4),(size_t)(m5)*sizeof(**(r5)),(r5),(size_t)(m6)*sizeof(**(r6)),(r6),(size_t)(m7)*sizeof(**(r7)),(r7)) 11151795a4d1SJed Brown 11161795a4d1SJed Brown /*MC 1117503cfb0cSBarry Smith PetscNew - Allocates memory of a particular type, zeros the memory! Aligned to PETSC_MEMALIGN 1118d382aafbSBarry Smith 1119eca87e8dSBarry Smith Synopsis: 1120aaa7dc30SBarry Smith #include <petscsys.h> 1121b00a9115SJed Brown PetscErrorCode PetscNew(type **result) 1122eca87e8dSBarry Smith 1123eca87e8dSBarry Smith Not Collective 1124eca87e8dSBarry Smith 1125d382aafbSBarry Smith Output Parameter: 1126b00a9115SJed Brown . result - memory allocated, sized to match pointer type 1127d382aafbSBarry Smith 1128d382aafbSBarry Smith Level: beginner 1129d382aafbSBarry Smith 1130390e1bf2SBarry Smith .seealso: PetscFree(), PetscMalloc(), PetscNewLog(), PetscCalloc1(), PetscMalloc1() 1131d382aafbSBarry Smith 1132d382aafbSBarry Smith Concepts: memory allocation 1133d382aafbSBarry Smith 1134d382aafbSBarry Smith M*/ 1135b00a9115SJed Brown #define PetscNew(b) PetscCalloc1(1,(b)) 1136ad0619ddSBarry Smith 1137ad0619ddSBarry Smith /*MC 1138b00a9115SJed Brown PetscNewLog - Allocates memory of a type matching pointer, zeros the memory! Aligned to PETSC_MEMALIGN. Associates the memory allocated 1139ad0619ddSBarry Smith with the given object using PetscLogObjectMemory(). 1140ad0619ddSBarry Smith 1141ad0619ddSBarry Smith Synopsis: 1142aaa7dc30SBarry Smith #include <petscsys.h> 1143b00a9115SJed Brown PetscErrorCode PetscNewLog(PetscObject obj,type **result) 1144ad0619ddSBarry Smith 1145ad0619ddSBarry Smith Not Collective 1146ad0619ddSBarry Smith 1147ad0619ddSBarry Smith Input Parameter: 1148b00a9115SJed Brown . obj - object memory is logged to 1149ad0619ddSBarry Smith 1150ad0619ddSBarry Smith Output Parameter: 1151b00a9115SJed Brown . result - memory allocated, sized to match pointer type 1152ad0619ddSBarry Smith 1153ad0619ddSBarry Smith Level: developer 1154ad0619ddSBarry Smith 1155390e1bf2SBarry Smith .seealso: PetscFree(), PetscMalloc(), PetscNew(), PetscLogObjectMemory(), PetscCalloc1(), PetscMalloc1() 1156ad0619ddSBarry Smith 1157ad0619ddSBarry Smith Concepts: memory allocation 1158ad0619ddSBarry Smith 1159ad0619ddSBarry Smith M*/ 1160d12f57a0SLisandro Dalcin #define PetscNewLog(o,b) (PetscNew((b)) || PetscLogObjectMemory((PetscObject)o,sizeof(**(b)))) 1161d382aafbSBarry Smith 1162d382aafbSBarry Smith /*MC 1163d382aafbSBarry Smith PetscFree - Frees memory 1164d382aafbSBarry Smith 1165eca87e8dSBarry Smith Synopsis: 1166aaa7dc30SBarry Smith #include <petscsys.h> 1167eca87e8dSBarry Smith PetscErrorCode PetscFree(void *memory) 1168eca87e8dSBarry Smith 1169eca87e8dSBarry Smith Not Collective 1170eca87e8dSBarry Smith 1171d382aafbSBarry Smith Input Parameter: 1172390e1bf2SBarry Smith . memory - memory to free (the pointer is ALWAYS set to NULL upon sucess) 1173d382aafbSBarry Smith 1174d382aafbSBarry Smith Level: beginner 1175d382aafbSBarry Smith 117649d7da52SJed Brown Notes: 1177390e1bf2SBarry Smith Do not free memory obtained with PetscMalloc2(), PetscCalloc2() etc, they must be freed with PetscFree2() etc. 1178390e1bf2SBarry Smith 117949d7da52SJed Brown It is safe to call PetscFree() on a NULL pointer. 1180d382aafbSBarry Smith 1181390e1bf2SBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscNewLog(), PetscMalloc1(), PetscCalloc1() 1182d382aafbSBarry Smith 1183d382aafbSBarry Smith Concepts: memory allocation 1184d382aafbSBarry Smith 1185d382aafbSBarry Smith M*/ 118649d7da52SJed Brown #define PetscFree(a) ((*PetscTrFree)((void*)(a),__LINE__,PETSC_FUNCTION_NAME,__FILE__) || ((a) = 0,0)) 1187d382aafbSBarry Smith 1188d382aafbSBarry Smith /*MC 1189d382aafbSBarry Smith PetscFree2 - Frees 2 chunks of memory obtained with PetscMalloc2() 1190d382aafbSBarry Smith 1191eca87e8dSBarry Smith Synopsis: 1192aaa7dc30SBarry Smith #include <petscsys.h> 1193eca87e8dSBarry Smith PetscErrorCode PetscFree2(void *memory1,void *memory2) 1194eca87e8dSBarry Smith 1195eca87e8dSBarry Smith Not Collective 1196eca87e8dSBarry Smith 1197e28ce29aSPatrick Sanan Input Parameters: 1198d382aafbSBarry Smith + memory1 - memory to free 1199d382aafbSBarry Smith - memory2 - 2nd memory to free 1200d382aafbSBarry Smith 1201d382aafbSBarry Smith Level: developer 1202d382aafbSBarry Smith 1203d382aafbSBarry Smith Notes: Memory must have been obtained with PetscMalloc2() 1204d382aafbSBarry Smith 1205d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree() 1206d382aafbSBarry Smith 1207d382aafbSBarry Smith Concepts: memory allocation 1208d382aafbSBarry Smith 1209d382aafbSBarry Smith M*/ 1210ba282f50SJed Brown #define PetscFree2(m1,m2) PetscFreeA(2,__LINE__,PETSC_FUNCTION_NAME,__FILE__,&(m1),&(m2)) 1211d382aafbSBarry Smith 1212d382aafbSBarry Smith /*MC 1213d382aafbSBarry Smith PetscFree3 - Frees 3 chunks of memory obtained with PetscMalloc3() 1214d382aafbSBarry Smith 1215eca87e8dSBarry Smith Synopsis: 1216aaa7dc30SBarry Smith #include <petscsys.h> 1217eca87e8dSBarry Smith PetscErrorCode PetscFree3(void *memory1,void *memory2,void *memory3) 1218eca87e8dSBarry Smith 1219eca87e8dSBarry Smith Not Collective 1220eca87e8dSBarry Smith 1221e28ce29aSPatrick Sanan Input Parameters: 1222d382aafbSBarry Smith + memory1 - memory to free 1223d382aafbSBarry Smith . memory2 - 2nd memory to free 1224d382aafbSBarry Smith - memory3 - 3rd memory to free 1225d382aafbSBarry Smith 1226d382aafbSBarry Smith Level: developer 1227d382aafbSBarry Smith 1228d382aafbSBarry Smith Notes: Memory must have been obtained with PetscMalloc3() 1229d382aafbSBarry Smith 1230d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree(), PetscMalloc3() 1231d382aafbSBarry Smith 1232d382aafbSBarry Smith Concepts: memory allocation 1233d382aafbSBarry Smith 1234d382aafbSBarry Smith M*/ 1235ba282f50SJed Brown #define PetscFree3(m1,m2,m3) PetscFreeA(3,__LINE__,PETSC_FUNCTION_NAME,__FILE__,&(m1),&(m2),&(m3)) 1236d382aafbSBarry Smith 1237d382aafbSBarry Smith /*MC 1238d382aafbSBarry Smith PetscFree4 - Frees 4 chunks of memory obtained with PetscMalloc4() 1239d382aafbSBarry Smith 1240eca87e8dSBarry Smith Synopsis: 1241aaa7dc30SBarry Smith #include <petscsys.h> 1242eca87e8dSBarry Smith PetscErrorCode PetscFree4(void *m1,void *m2,void *m3,void *m4) 1243eca87e8dSBarry Smith 1244eca87e8dSBarry Smith Not Collective 1245eca87e8dSBarry Smith 1246e28ce29aSPatrick Sanan Input Parameters: 1247d382aafbSBarry Smith + m1 - memory to free 1248d382aafbSBarry Smith . m2 - 2nd memory to free 1249d382aafbSBarry Smith . m3 - 3rd memory to free 1250d382aafbSBarry Smith - m4 - 4th memory to free 1251d382aafbSBarry Smith 1252d382aafbSBarry Smith Level: developer 1253d382aafbSBarry Smith 1254d382aafbSBarry Smith Notes: Memory must have been obtained with PetscMalloc4() 1255d382aafbSBarry Smith 1256d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree(), PetscMalloc3(), PetscMalloc4() 1257d382aafbSBarry Smith 1258d382aafbSBarry Smith Concepts: memory allocation 1259d382aafbSBarry Smith 1260d382aafbSBarry Smith M*/ 1261ba282f50SJed Brown #define PetscFree4(m1,m2,m3,m4) PetscFreeA(4,__LINE__,PETSC_FUNCTION_NAME,__FILE__,&(m1),&(m2),&(m3),&(m4)) 1262d382aafbSBarry Smith 1263d382aafbSBarry Smith /*MC 1264d382aafbSBarry Smith PetscFree5 - Frees 5 chunks of memory obtained with PetscMalloc5() 1265d382aafbSBarry Smith 1266eca87e8dSBarry Smith Synopsis: 1267aaa7dc30SBarry Smith #include <petscsys.h> 1268eca87e8dSBarry Smith PetscErrorCode PetscFree5(void *m1,void *m2,void *m3,void *m4,void *m5) 1269eca87e8dSBarry Smith 1270eca87e8dSBarry Smith Not Collective 1271eca87e8dSBarry Smith 1272e28ce29aSPatrick Sanan Input Parameters: 1273d382aafbSBarry Smith + m1 - memory to free 1274d382aafbSBarry Smith . m2 - 2nd memory to free 1275d382aafbSBarry Smith . m3 - 3rd memory to free 1276d382aafbSBarry Smith . m4 - 4th memory to free 1277d382aafbSBarry Smith - m5 - 5th memory to free 1278d382aafbSBarry Smith 1279d382aafbSBarry Smith Level: developer 1280d382aafbSBarry Smith 1281d382aafbSBarry Smith Notes: Memory must have been obtained with PetscMalloc5() 1282d382aafbSBarry Smith 1283d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree(), PetscMalloc3(), PetscMalloc4(), PetscMalloc5() 1284d382aafbSBarry Smith 1285d382aafbSBarry Smith Concepts: memory allocation 1286d382aafbSBarry Smith 1287d382aafbSBarry Smith M*/ 1288ba282f50SJed Brown #define PetscFree5(m1,m2,m3,m4,m5) PetscFreeA(5,__LINE__,PETSC_FUNCTION_NAME,__FILE__,&(m1),&(m2),&(m3),&(m4),&(m5)) 1289d382aafbSBarry Smith 1290d382aafbSBarry Smith /*MC 1291d382aafbSBarry Smith PetscFree6 - Frees 6 chunks of memory obtained with PetscMalloc6() 1292d382aafbSBarry Smith 1293eca87e8dSBarry Smith Synopsis: 1294aaa7dc30SBarry Smith #include <petscsys.h> 1295eca87e8dSBarry Smith PetscErrorCode PetscFree6(void *m1,void *m2,void *m3,void *m4,void *m5,void *m6) 1296eca87e8dSBarry Smith 1297eca87e8dSBarry Smith Not Collective 1298eca87e8dSBarry Smith 1299e28ce29aSPatrick Sanan Input Parameters: 1300d382aafbSBarry Smith + m1 - memory to free 1301d382aafbSBarry Smith . m2 - 2nd memory to free 1302d382aafbSBarry Smith . m3 - 3rd memory to free 1303d382aafbSBarry Smith . m4 - 4th memory to free 1304d382aafbSBarry Smith . m5 - 5th memory to free 1305d382aafbSBarry Smith - m6 - 6th memory to free 1306d382aafbSBarry Smith 1307d382aafbSBarry Smith 1308d382aafbSBarry Smith Level: developer 1309d382aafbSBarry Smith 1310d382aafbSBarry Smith Notes: Memory must have been obtained with PetscMalloc6() 1311d382aafbSBarry Smith 1312d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree(), PetscMalloc3(), PetscMalloc4(), PetscMalloc5(), PetscMalloc6() 1313d382aafbSBarry Smith 1314d382aafbSBarry Smith Concepts: memory allocation 1315d382aafbSBarry Smith 1316d382aafbSBarry Smith M*/ 1317ba282f50SJed Brown #define PetscFree6(m1,m2,m3,m4,m5,m6) PetscFreeA(6,__LINE__,PETSC_FUNCTION_NAME,__FILE__,&(m1),&(m2),&(m3),&(m4),&(m5),&(m6)) 1318d382aafbSBarry Smith 1319d382aafbSBarry Smith /*MC 1320d382aafbSBarry Smith PetscFree7 - Frees 7 chunks of memory obtained with PetscMalloc7() 1321d382aafbSBarry Smith 1322eca87e8dSBarry Smith Synopsis: 1323aaa7dc30SBarry Smith #include <petscsys.h> 1324eca87e8dSBarry Smith PetscErrorCode PetscFree7(void *m1,void *m2,void *m3,void *m4,void *m5,void *m6,void *m7) 1325eca87e8dSBarry Smith 1326eca87e8dSBarry Smith Not Collective 1327eca87e8dSBarry Smith 1328e28ce29aSPatrick Sanan Input Parameters: 1329d382aafbSBarry Smith + m1 - memory to free 1330d382aafbSBarry Smith . m2 - 2nd memory to free 1331d382aafbSBarry Smith . m3 - 3rd memory to free 1332d382aafbSBarry Smith . m4 - 4th memory to free 1333d382aafbSBarry Smith . m5 - 5th memory to free 1334d382aafbSBarry Smith . m6 - 6th memory to free 1335d382aafbSBarry Smith - m7 - 7th memory to free 1336d382aafbSBarry Smith 1337d382aafbSBarry Smith 1338d382aafbSBarry Smith Level: developer 1339d382aafbSBarry Smith 1340d382aafbSBarry Smith Notes: Memory must have been obtained with PetscMalloc7() 1341d382aafbSBarry Smith 1342d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree(), PetscMalloc3(), PetscMalloc4(), PetscMalloc5(), PetscMalloc6(), 1343d382aafbSBarry Smith PetscMalloc7() 1344d382aafbSBarry Smith 1345d382aafbSBarry Smith Concepts: memory allocation 1346d382aafbSBarry Smith 1347d382aafbSBarry Smith M*/ 1348ba282f50SJed Brown #define PetscFree7(m1,m2,m3,m4,m5,m6,m7) PetscFreeA(7,__LINE__,PETSC_FUNCTION_NAME,__FILE__,&(m1),&(m2),&(m3),&(m4),&(m5),&(m6),&(m7)) 1349d382aafbSBarry Smith 1350ba282f50SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocA(int,PetscBool,int,const char *,const char *,size_t,void *,...); 1351ba282f50SJed Brown PETSC_EXTERN PetscErrorCode PetscFreeA(int,int,const char *,const char *,void *,...); 1352efca3c55SSatish Balay PETSC_EXTERN PetscErrorCode (*PetscTrMalloc)(size_t,int,const char[],const char[],void**); 1353efca3c55SSatish Balay PETSC_EXTERN PetscErrorCode (*PetscTrFree)(void*,int,const char[],const char[]); 13543221ece2SMatthew G. Knepley PETSC_EXTERN PetscErrorCode (*PetscTrRealloc)(size_t,int,const char[],const char[],void**); 1355ba282f50SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocSetCoalesce(PetscBool); 1356efca3c55SSatish Balay PETSC_EXTERN PetscErrorCode PetscMallocSet(PetscErrorCode (*)(size_t,int,const char[],const char[],void**),PetscErrorCode (*)(void*,int,const char[],const char[])); 1357014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocClear(void); 1358d382aafbSBarry Smith 1359d382aafbSBarry Smith /* 1360c1706be6SHong Zhang Unlike PetscMallocSet and PetscMallocClear which overwrite the existing settings, these two functions save the previous choice of allocator, and should be used in pair. 1361c1706be6SHong Zhang */ 1362c1706be6SHong Zhang PETSC_EXTERN PetscErrorCode PetscMallocSetDRAM(void); 1363c1706be6SHong Zhang PETSC_EXTERN PetscErrorCode PetscMallocResetDRAM(void); 1364c1706be6SHong Zhang 1365c1706be6SHong Zhang /* 1366a5057860SBarry Smith PetscLogDouble variables are used to contain double precision numbers 1367a5057860SBarry Smith that are not used in the numerical computations, but rather in logging, 1368a5057860SBarry Smith timing etc. 1369a5057860SBarry Smith */ 1370a5057860SBarry Smith typedef double PetscLogDouble; 1371a5057860SBarry Smith #define MPIU_PETSCLOGDOUBLE MPI_DOUBLE 1372a5057860SBarry Smith 1373a5057860SBarry Smith /* 137466d669d6SBarry Smith Routines for tracing memory corruption/bleeding with default PETSc memory allocation 1375d382aafbSBarry Smith */ 1376014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocDump(FILE *); 1377014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocDumpLog(FILE *); 1378014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocGetCurrentUsage(PetscLogDouble *); 1379014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocGetMaximumUsage(PetscLogDouble *); 1380014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocDebug(PetscBool); 13810acecf5bSBarry Smith PETSC_EXTERN PetscErrorCode PetscMallocGetDebug(PetscBool*); 1382efca3c55SSatish Balay PETSC_EXTERN PetscErrorCode PetscMallocValidate(int,const char[],const char[]); 1383014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocSetDumpLog(void); 1384574034a9SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocSetDumpLogThreshold(PetscLogDouble); 1385014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocGetDumpLog(PetscBool*); 1386d382aafbSBarry Smith 1387d382aafbSBarry Smith /*E 1388d382aafbSBarry Smith PetscDataType - Used for handling different basic data types. 1389d382aafbSBarry Smith 1390d382aafbSBarry Smith Level: beginner 1391d382aafbSBarry Smith 1392e8a7dd7fSJed Brown Notes: 1393e8a7dd7fSJed Brown Use of this should be avoided if one can directly use MPI_Datatype instead. 139494fbd55eSBarry Smith 1395e28ce29aSPatrick Sanan Developer comment: 1396e28ce29aSPatrick Sanan It would be nice if we could always just use MPI Datatypes, why can we not? 1397d382aafbSBarry Smith 1398d382aafbSBarry Smith .seealso: PetscBinaryRead(), PetscBinaryWrite(), PetscDataTypeToMPIDataType(), 1399d382aafbSBarry Smith PetscDataTypeGetSize() 1400d382aafbSBarry Smith 1401d382aafbSBarry Smith E*/ 1402d382aafbSBarry Smith typedef enum {PETSC_INT = 0,PETSC_DOUBLE = 1,PETSC_COMPLEX = 2, PETSC_LONG = 3 ,PETSC_SHORT = 4,PETSC_FLOAT = 5, 1403570b7f6dSBarry Smith PETSC_CHAR = 6,PETSC_BIT_LOGICAL = 7,PETSC_ENUM = 8,PETSC_BOOL=9, PETSC___FLOAT128 = 10,PETSC_OBJECT = 11, PETSC_FUNCTION = 12, PETSC_STRING = 13, PETSC___FP16 = 14,PETSC_STRUCT, PETSC_DATATYPE_UNKNOWN} PetscDataType; 14046a6fc655SJed Brown PETSC_EXTERN const char *const PetscDataTypes[]; 1405d382aafbSBarry Smith 1406d382aafbSBarry Smith #if defined(PETSC_USE_COMPLEX) 1407d382aafbSBarry Smith #define PETSC_SCALAR PETSC_COMPLEX 1408d382aafbSBarry Smith #else 1409ce63c4c1SBarry Smith #if defined(PETSC_USE_REAL_SINGLE) 1410d382aafbSBarry Smith #define PETSC_SCALAR PETSC_FLOAT 141159a34000SBarry Smith #elif defined(PETSC_USE_REAL___FLOAT128) 141259a34000SBarry Smith #define PETSC_SCALAR PETSC___FLOAT128 1413570b7f6dSBarry Smith #elif defined(PETSC_USE_REAL___FP16) 1414570b7f6dSBarry Smith #define PETSC_SCALAR PETSC___FP16 1415d382aafbSBarry Smith #else 1416d382aafbSBarry Smith #define PETSC_SCALAR PETSC_DOUBLE 1417d382aafbSBarry Smith #endif 1418d382aafbSBarry Smith #endif 1419ce63c4c1SBarry Smith #if defined(PETSC_USE_REAL_SINGLE) 1420d382aafbSBarry Smith #define PETSC_REAL PETSC_FLOAT 142159a34000SBarry Smith #elif defined(PETSC_USE_REAL___FLOAT128) 142259a34000SBarry Smith #define PETSC_REAL PETSC___FLOAT128 1423570b7f6dSBarry Smith #elif defined(PETSC_USE_REAL___FP16) 1424570b7f6dSBarry Smith #define PETSC_REAL PETSC___FP16 1425d382aafbSBarry Smith #else 1426d382aafbSBarry Smith #define PETSC_REAL PETSC_DOUBLE 1427d382aafbSBarry Smith #endif 1428d382aafbSBarry Smith #define PETSC_FORTRANADDR PETSC_LONG 1429d382aafbSBarry Smith 1430014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDataTypeToMPIDataType(PetscDataType,MPI_Datatype*); 1431014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMPIDataTypeToPetscDataType(MPI_Datatype,PetscDataType*); 1432014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDataTypeGetSize(PetscDataType,size_t*); 14338e4b2d1dSBarry Smith PETSC_EXTERN PetscErrorCode PetscDataTypeFromString(const char*,PetscDataType*,PetscBool*); 1434d382aafbSBarry Smith 1435d382aafbSBarry Smith /* 1436d382aafbSBarry Smith Basic memory and string operations. These are usually simple wrappers 1437d382aafbSBarry Smith around the basic Unix system calls, but a few of them have additional 1438d382aafbSBarry Smith functionality and/or error checking. 1439d382aafbSBarry Smith */ 1440014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBitMemcpy(void*,PetscInt,const void*,PetscInt,PetscInt,PetscDataType); 1441014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMemmove(void*,void *,size_t); 1442014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMemcmp(const void*,const void*,size_t,PetscBool *); 1443014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrlen(const char[],size_t*); 1444d67fe73bSBarry Smith PETSC_EXTERN PetscErrorCode PetscStrToArray(const char[],char,int*,char ***); 1445014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrToArrayDestroy(int,char **); 1446014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrcmp(const char[],const char[],PetscBool *); 1447014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrgrt(const char[],const char[],PetscBool *); 1448014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrcasecmp(const char[],const char[],PetscBool *); 1449014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrncmp(const char[],const char[],size_t,PetscBool *); 1450014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrcpy(char[],const char[]); 1451014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrcat(char[],const char[]); 1452014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrncat(char[],const char[],size_t); 1453014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrncpy(char[],const char[],size_t); 1454014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrchr(const char[],char,char *[]); 1455014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrtolower(char[]); 14562f234a98SBarry Smith PETSC_EXTERN PetscErrorCode PetscStrtoupper(char[]); 1457014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrrchr(const char[],char,char *[]); 1458014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrstr(const char[],const char[],char *[]); 1459014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrrstr(const char[],const char[],char *[]); 1460014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrendswith(const char[],const char[],PetscBool*); 14612c9581d2SBarry Smith PETSC_EXTERN PetscErrorCode PetscStrbeginswith(const char[],const char[],PetscBool*); 1462014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrendswithwhich(const char[],const char *const*,PetscInt*); 1463014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrallocpy(const char[],char *[]); 146447340559SBarry Smith PETSC_EXTERN PetscErrorCode PetscStrArrayallocpy(const char *const*,char***); 14656fed8037SJed Brown PETSC_EXTERN PetscErrorCode PetscStrArrayDestroy(char***); 14666991f827SBarry Smith PETSC_EXTERN PetscErrorCode PetscStrNArrayallocpy(PetscInt,const char *const*,char***); 14676991f827SBarry Smith PETSC_EXTERN PetscErrorCode PetscStrNArrayDestroy(PetscInt,char***); 1468014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrreplace(MPI_Comm,const char[],char[],size_t); 1469d382aafbSBarry Smith 1470573b0fb4SBarry Smith PETSC_EXTERN void PetscStrcmpNoError(const char[],const char[],PetscBool *); 1471573b0fb4SBarry Smith 1472d382aafbSBarry Smith /*S 1473d382aafbSBarry Smith PetscToken - 'Token' used for managing tokenizing strings 1474d382aafbSBarry Smith 1475d382aafbSBarry Smith Level: intermediate 1476d382aafbSBarry Smith 1477d382aafbSBarry Smith .seealso: PetscTokenCreate(), PetscTokenFind(), PetscTokenDestroy() 1478d382aafbSBarry Smith S*/ 1479d382aafbSBarry Smith typedef struct _p_PetscToken* PetscToken; 1480d382aafbSBarry Smith 1481014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscTokenCreate(const char[],const char,PetscToken*); 1482014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscTokenFind(PetscToken,char *[]); 1483014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscTokenDestroy(PetscToken*); 1484d382aafbSBarry Smith 1485a53986e1SJed Brown PETSC_EXTERN PetscErrorCode PetscEListFind(PetscInt,const char *const*,const char*,PetscInt*,PetscBool*); 1486a53986e1SJed Brown PETSC_EXTERN PetscErrorCode PetscEnumFind(const char *const*,const char*,PetscEnum*,PetscBool*); 1487a53986e1SJed Brown 1488d382aafbSBarry Smith /* 1489d382aafbSBarry Smith These are MPI operations for MPI_Allreduce() etc 1490d382aafbSBarry Smith */ 1491367daffbSBarry Smith PETSC_EXTERN MPI_Op MPIU_MAXSUM_OP; 1492570b7f6dSBarry Smith #if (defined(PETSC_HAVE_COMPLEX) && !defined(PETSC_HAVE_MPI_C_DOUBLE_COMPLEX)) || defined(PETSC_USE_REAL___FLOAT128) || defined(PETSC_USE_REAL___FP16) 1493014dd563SJed Brown PETSC_EXTERN MPI_Op MPIU_SUM; 14942414b3c7SJed Brown #else 14952414b3c7SJed Brown #define MPIU_SUM MPI_SUM 14962414b3c7SJed Brown #endif 1497570b7f6dSBarry Smith #if defined(PETSC_USE_REAL___FLOAT128) || defined(PETSC_USE_REAL___FP16) 1498014dd563SJed Brown PETSC_EXTERN MPI_Op MPIU_MAX; 1499014dd563SJed Brown PETSC_EXTERN MPI_Op MPIU_MIN; 1500d9822059SBarry Smith #else 1501d9822059SBarry Smith #define MPIU_MAX MPI_MAX 1502d9822059SBarry Smith #define MPIU_MIN MPI_MIN 1503d9822059SBarry Smith #endif 1504014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMaxSum(MPI_Comm,const PetscInt[],PetscInt*,PetscInt*); 1505d382aafbSBarry Smith 1506014dd563SJed Brown PETSC_EXTERN PetscErrorCode MPIULong_Send(void*,PetscInt,MPI_Datatype,PetscMPIInt,PetscMPIInt,MPI_Comm); 1507014dd563SJed Brown PETSC_EXTERN PetscErrorCode MPIULong_Recv(void*,PetscInt,MPI_Datatype,PetscMPIInt,PetscMPIInt,MPI_Comm); 1508eb3f98d2SBarry Smith 1509d382aafbSBarry Smith /*S 1510d382aafbSBarry Smith PetscObject - any PETSc object, PetscViewer, Mat, Vec, KSP etc 1511d382aafbSBarry Smith 1512d382aafbSBarry Smith Level: beginner 1513d382aafbSBarry Smith 1514e28ce29aSPatrick Sanan Note: 1515e28ce29aSPatrick Sanan This is the base class from which all PETSc objects are derived from. 1516d382aafbSBarry Smith 15172b26979fSBarry Smith .seealso: PetscObjectDestroy(), PetscObjectView(), PetscObjectGetName(), PetscObjectSetName(), PetscObjectReference(), PetscObjectDereference() 1518d382aafbSBarry Smith S*/ 1519d382aafbSBarry Smith typedef struct _p_PetscObject* PetscObject; 1520d382aafbSBarry Smith 1521270bf2e7SJed Brown /*MC 1522127c8a3bSJed Brown PetscObjectId - unique integer Id for a PetscObject 1523127c8a3bSJed Brown 1524127c8a3bSJed Brown Level: developer 1525127c8a3bSJed Brown 1526e28ce29aSPatrick Sanan Notes: 1527e28ce29aSPatrick Sanan Unlike pointer values, object ids are never reused. 1528127c8a3bSJed Brown 1529127c8a3bSJed Brown .seealso: PetscObjectState, PetscObjectGetId() 1530127c8a3bSJed Brown M*/ 153106e41213SSatish Balay #if defined(PETSC_USING_F90) && !defined(PETSC_USE_FORTRANKIND) /* compaq F90 */ 153206e41213SSatish Balay typedef int PetscObjectId; 153306e41213SSatish Balay #else 1534bafee8b4SSatish Balay typedef PetscInt64 PetscObjectId; 153506e41213SSatish Balay #endif 1536127c8a3bSJed Brown 1537127c8a3bSJed Brown /*MC 1538270bf2e7SJed Brown PetscObjectState - integer state for a PetscObject 1539270bf2e7SJed Brown 1540270bf2e7SJed Brown Level: developer 1541270bf2e7SJed Brown 1542270bf2e7SJed Brown Notes: 1543270bf2e7SJed Brown Object state is always-increasing and (for objects that track state) can be used to determine if an object has 1544270bf2e7SJed Brown changed since the last time you interacted with it. It is 64-bit so that it will not overflow for a very long time. 1545270bf2e7SJed Brown 15468dcff661SJed Brown .seealso: PetscObjectId, PetscObjectStateGet(), PetscObjectStateIncrease(), PetscObjectStateSet() 1547270bf2e7SJed Brown M*/ 154806e41213SSatish Balay #if defined(PETSC_USING_F90) && !defined(PETSC_USE_FORTRANKIND) /* compaq F90 */ 154906e41213SSatish Balay typedef int PetscObjectState; 155006e41213SSatish Balay #else 1551bafee8b4SSatish Balay typedef PetscInt64 PetscObjectState; 155206e41213SSatish Balay #endif 1553270bf2e7SJed Brown 1554d382aafbSBarry Smith /*S 1555140e18c1SBarry Smith PetscFunctionList - Linked list of functions, possibly stored in dynamic libraries, accessed 1556d382aafbSBarry Smith by string name 1557d382aafbSBarry Smith 1558d382aafbSBarry Smith Level: advanced 1559d382aafbSBarry Smith 1560140e18c1SBarry Smith .seealso: PetscFunctionListAdd(), PetscFunctionListDestroy(), PetscOpFlist 1561d382aafbSBarry Smith S*/ 1562140e18c1SBarry Smith typedef struct _n_PetscFunctionList *PetscFunctionList; 1563d382aafbSBarry Smith 1564d382aafbSBarry Smith /*E 1565d382aafbSBarry Smith PetscFileMode - Access mode for a file. 1566d382aafbSBarry Smith 1567d382aafbSBarry Smith Level: beginner 1568d382aafbSBarry Smith 15691cc8b206SBarry Smith $ FILE_MODE_READ - open a file at its beginning for reading 15701cc8b206SBarry Smith $ FILE_MODE_WRITE - open a file at its beginning for writing (will create if the file does not exist) 15711cc8b206SBarry Smith $ FILE_MODE_APPEND - open a file at end for writing 15721cc8b206SBarry Smith $ FILE_MODE_UPDATE - open a file for updating, meaning for reading and writing 15731cc8b206SBarry Smith $ FILE_MODE_APPEND_UPDATE - open a file for updating, meaning for reading and writing, at the end 1574d382aafbSBarry Smith 1575d382aafbSBarry Smith .seealso: PetscViewerFileSetMode() 1576d382aafbSBarry Smith E*/ 1577d382aafbSBarry Smith typedef enum {FILE_MODE_READ, FILE_MODE_WRITE, FILE_MODE_APPEND, FILE_MODE_UPDATE, FILE_MODE_APPEND_UPDATE} PetscFileMode; 1578d6a4318aSJed Brown extern const char *const PetscFileModes[]; 1579d6a4318aSJed Brown 1580639ff905SBarry Smith /* 1581639ff905SBarry Smith Defines PETSc error handling. 1582639ff905SBarry Smith */ 1583639ff905SBarry Smith #include <petscerror.h> 1584d382aafbSBarry Smith 15850700a824SBarry Smith #define PETSC_SMALLEST_CLASSID 1211211 1586014dd563SJed Brown PETSC_EXTERN PetscClassId PETSC_LARGEST_CLASSID; 1587014dd563SJed Brown PETSC_EXTERN PetscClassId PETSC_OBJECT_CLASSID; 1588014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscClassIdRegister(const char[],PetscClassId *); 1589d382aafbSBarry Smith 1590d382aafbSBarry Smith /* 1591d382aafbSBarry Smith Routines that get memory usage information from the OS 1592d382aafbSBarry Smith */ 1593014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMemoryGetCurrentUsage(PetscLogDouble *); 1594014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMemoryGetMaximumUsage(PetscLogDouble *); 1595014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMemorySetGetMaximumUsage(void); 1596b44d5720SBarry Smith PETSC_EXTERN PetscErrorCode PetscMemoryTrace(const char[]); 1597d382aafbSBarry Smith 1598014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscInfoAllow(PetscBool ,const char []); 1599014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSleep(PetscReal); 1600d382aafbSBarry Smith 1601d382aafbSBarry Smith /* 1602d382aafbSBarry Smith Initialization of PETSc 1603d382aafbSBarry Smith */ 1604014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscInitialize(int*,char***,const char[],const char[]); 1605014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscInitializeNoPointers(int,char**,const char[],const char[]); 1606014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscInitializeNoArguments(void); 1607014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscInitialized(PetscBool *); 1608014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFinalized(PetscBool *); 1609014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFinalize(void); 1610014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscInitializeFortran(void); 1611014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetArgs(int*,char ***); 1612014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetArguments(char ***); 1613014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFreeArguments(char **); 1614d382aafbSBarry Smith 1615014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscEnd(void); 1616607a6623SBarry Smith PETSC_EXTERN PetscErrorCode PetscSysInitializePackage(void); 1617d382aafbSBarry Smith 1618014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPythonInitialize(const char[],const char[]); 1619014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPythonFinalize(void); 1620014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPythonPrintError(void); 1621014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPythonMonitorSet(PetscObject,const char[]); 1622d382aafbSBarry Smith 1623d382aafbSBarry Smith /* 1624d382aafbSBarry Smith These are so that in extern C code we can caste function pointers to non-extern C 16252981ebdbSBarry Smith function pointers. Since the regular C++ code expects its function pointers to be C++ 1626d382aafbSBarry Smith */ 1627638cfed1SJed Brown PETSC_EXTERN_TYPEDEF typedef void (**PetscVoidStarFunction)(void); 1628638cfed1SJed Brown PETSC_EXTERN_TYPEDEF typedef void (*PetscVoidFunction)(void); 1629638cfed1SJed Brown PETSC_EXTERN_TYPEDEF typedef PetscErrorCode (*PetscErrorCodeFunction)(void); 1630d382aafbSBarry Smith 1631d382aafbSBarry Smith /* 1632d382aafbSBarry Smith Functions that can act on any PETSc object. 1633d382aafbSBarry Smith */ 1634014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectDestroy(PetscObject*); 1635014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetComm(PetscObject,MPI_Comm *); 1636014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetClassId(PetscObject,PetscClassId *); 1637014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetClassName(PetscObject,const char *[]); 1638014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectSetType(PetscObject,const char []); 1639014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetType(PetscObject,const char *[]); 1640014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectSetName(PetscObject,const char[]); 1641014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetName(PetscObject,const char*[]); 1642014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectSetTabLevel(PetscObject,PetscInt); 1643014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetTabLevel(PetscObject,PetscInt*); 1644014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectIncrementTabLevel(PetscObject,PetscObject,PetscInt); 1645014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectReference(PetscObject); 1646014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetReference(PetscObject,PetscInt*); 1647014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectDereference(PetscObject); 1648014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetNewTag(PetscObject,PetscMPIInt *); 1649014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectCompose(PetscObject,const char[],PetscObject); 1650014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectRemoveReference(PetscObject,const char[]); 1651014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectQuery(PetscObject,const char[],PetscObject *); 1652bdf89e91SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectComposeFunction_Private(PetscObject,const char[],void (*)(void)); 1653bdf89e91SBarry Smith #define PetscObjectComposeFunction(a,b,d) PetscObjectComposeFunction_Private(a,b,(PetscVoidFunction)(d)) 1654014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectSetFromOptions(PetscObject); 1655014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectSetUp(PetscObject); 16560eb63584SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectSetPrintedOptions(PetscObject); 16570eb63584SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectInheritPrintedOptions(PetscObject,PetscObject); 1658014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscCommGetNewTag(MPI_Comm,PetscMPIInt *); 1659d382aafbSBarry Smith 1660665c2dedSJed Brown #include <petscviewertypes.h> 1661639ff905SBarry Smith #include <petscoptions.h> 1662639ff905SBarry Smith 16630633abcbSJed Brown PETSC_EXTERN PetscErrorCode PetscObjectsListGetGlobalNumbering(MPI_Comm,PetscInt,PetscObject*,PetscInt*,PetscInt*); 16640633abcbSJed Brown 1665639ff905SBarry Smith PETSC_EXTERN PetscErrorCode PetscMemoryShowUsage(PetscViewer,const char[]); 1666c5e4d11fSDmitry Karpeev PETSC_EXTERN PetscErrorCode PetscMemoryView(PetscViewer,const char[]); 1667dae58748SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectPrintClassNamePrefixType(PetscObject,PetscViewer); 1668639ff905SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectView(PetscObject,PetscViewer); 16690005d66cSJed Brown #define PetscObjectQueryFunction(obj,name,fptr) PetscObjectQueryFunction_Private((obj),(name),(PetscVoidFunction*)(fptr)) 16700005d66cSJed Brown PETSC_EXTERN PetscErrorCode PetscObjectQueryFunction_Private(PetscObject,const char[],void (**)(void)); 1671014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectSetOptionsPrefix(PetscObject,const char[]); 1672014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectAppendOptionsPrefix(PetscObject,const char[]); 1673014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectPrependOptionsPrefix(PetscObject,const char[]); 1674014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetOptionsPrefix(PetscObject,const char*[]); 1675014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectChangeTypeName(PetscObject,const char[]); 1676014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectRegisterDestroy(PetscObject); 1677014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectRegisterDestroyAll(void); 1678685405a1SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectViewFromOptions(PetscObject,PetscObject,const char[]); 1679014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectName(PetscObject); 1680014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectTypeCompare(PetscObject,const char[],PetscBool *); 16814099cc6bSBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectBaseTypeCompare(PetscObject,const char[],PetscBool *); 1682014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectTypeCompareAny(PetscObject,PetscBool*,const char[],...); 1683014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRegisterFinalize(PetscErrorCode (*)(void)); 1684014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRegisterFinalizeAll(void); 1685d382aafbSBarry Smith 1686e04113cfSBarry Smith #if defined(PETSC_HAVE_SAWS) 16877aab2a10SBarry Smith PETSC_EXTERN PetscErrorCode PetscSAWsBlock(void); 1688e04113cfSBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectSAWsViewOff(PetscObject); 1689e04113cfSBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectSAWsSetBlock(PetscObject,PetscBool); 1690e04113cfSBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectSAWsBlock(PetscObject); 1691e04113cfSBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectSAWsGrantAccess(PetscObject); 1692e04113cfSBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectSAWsTakeAccess(PetscObject); 1693e04113cfSBarry Smith PETSC_EXTERN void PetscStackSAWsGrantAccess(void); 1694e04113cfSBarry Smith PETSC_EXTERN void PetscStackSAWsTakeAccess(void); 1695e04113cfSBarry Smith PETSC_EXTERN PetscErrorCode PetscStackViewSAWs(void); 1696e04113cfSBarry Smith PETSC_EXTERN PetscErrorCode PetscStackSAWsViewOff(void); 169715681b3cSBarry Smith 1698ec7429eaSBarry Smith #else 16997aab2a10SBarry Smith #define PetscSAWsBlock() 0 1700e04113cfSBarry Smith #define PetscObjectSAWsViewOff(obj) 0 1701e04113cfSBarry Smith #define PetscObjectSAWsSetBlock(obj,flg) 0 1702e04113cfSBarry Smith #define PetscObjectSAWsBlock(obj) 0 1703e04113cfSBarry Smith #define PetscObjectSAWsGrantAccess(obj) 0 1704e04113cfSBarry Smith #define PetscObjectSAWsTakeAccess(obj) 0 1705e04113cfSBarry Smith #define PetscStackViewSAWs() 0 1706e04113cfSBarry Smith #define PetscStackSAWsViewOff() 0 1707e04113cfSBarry Smith #define PetscStackSAWsTakeAccess() 1708e04113cfSBarry Smith #define PetscStackSAWsGrantAccess() 170915681b3cSBarry Smith 1710ec7429eaSBarry Smith #endif 1711b90c6cbeSBarry Smith 17127d5d4d99SBarry Smith typedef void* PetscDLHandle; 1713e4d177b5SBarry Smith typedef enum {PETSC_DL_DECIDE=0,PETSC_DL_NOW=1,PETSC_DL_LOCAL=2} PetscDLMode; 171482b97d80SJed Brown PETSC_EXTERN PetscErrorCode PetscDLOpen(const char[],PetscDLMode,PetscDLHandle *); 171582b97d80SJed Brown PETSC_EXTERN PetscErrorCode PetscDLClose(PetscDLHandle *); 171682b97d80SJed Brown PETSC_EXTERN PetscErrorCode PetscDLSym(PetscDLHandle,const char[],void **); 17177d5d4d99SBarry Smith 17185fe58b6fSBarry Smith #if defined(PETSC_USE_DEBUG) 1719a64a8e02SBarry Smith PETSC_EXTERN PetscErrorCode PetscMallocGetStack(void*,PetscStack**); 17205fe58b6fSBarry Smith #endif 17217eb1d149SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectsDump(FILE*,PetscBool); 1722a64a8e02SBarry Smith 1723d382aafbSBarry Smith /*S 1724140e18c1SBarry Smith PetscObjectList - Linked list of PETSc objects, each accessable by string name 1725d382aafbSBarry Smith 17261d0fab5eSBarry Smith Level: developer 1727d382aafbSBarry Smith 1728e28ce29aSPatrick Sanan Notes: 1729e28ce29aSPatrick Sanan Used by PetscObjectCompose() and PetscObjectQuery() 17301d0fab5eSBarry Smith 1731140e18c1SBarry Smith .seealso: PetscObjectListAdd(), PetscObjectListDestroy(), PetscObjectListFind(), PetscObjectCompose(), PetscObjectQuery(), PetscFunctionList 1732d382aafbSBarry Smith S*/ 1733140e18c1SBarry Smith typedef struct _n_PetscObjectList *PetscObjectList; 1734d382aafbSBarry Smith 1735140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectListDestroy(PetscObjectList*); 1736140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectListFind(PetscObjectList,const char[],PetscObject*); 1737140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectListReverseFind(PetscObjectList,PetscObject,char**,PetscBool*); 1738140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectListAdd(PetscObjectList *,const char[],PetscObject); 1739140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectListRemoveReference(PetscObjectList *,const char[]); 1740140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectListDuplicate(PetscObjectList,PetscObjectList *); 1741d382aafbSBarry Smith 1742d382aafbSBarry Smith /* 1743503cfb0cSBarry Smith Dynamic library lists. Lists of names of routines in objects or in dynamic 1744d382aafbSBarry Smith link libraries that will be loaded as needed. 1745d382aafbSBarry Smith */ 1746a240a19fSJed Brown 1747a240a19fSJed Brown #define PetscFunctionListAdd(list,name,fptr) PetscFunctionListAdd_Private((list),(name),(PetscVoidFunction)(fptr)) 1748a240a19fSJed Brown PETSC_EXTERN PetscErrorCode PetscFunctionListAdd_Private(PetscFunctionList*,const char[],void (*)(void)); 1749140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscFunctionListDestroy(PetscFunctionList*); 17501c9cd337SJed Brown #define PetscFunctionListFind(list,name,fptr) PetscFunctionListFind_Private((list),(name),(PetscVoidFunction*)(fptr)) 17511c9cd337SJed Brown PETSC_EXTERN PetscErrorCode PetscFunctionListFind_Private(PetscFunctionList,const char[],void (**)(void)); 1752140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscFunctionListPrintTypes(MPI_Comm,FILE*,const char[],const char[],const char[],const char[],PetscFunctionList,const char[]); 1753140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscFunctionListDuplicate(PetscFunctionList,PetscFunctionList *); 1754140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscFunctionListView(PetscFunctionList,PetscViewer); 1755140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscFunctionListGet(PetscFunctionList,const char ***,int*); 1756d382aafbSBarry Smith 1757d382aafbSBarry Smith /*S 1758d382aafbSBarry Smith PetscDLLibrary - Linked list of dynamics libraries to search for functions 1759d382aafbSBarry Smith 1760d382aafbSBarry Smith Level: advanced 1761d382aafbSBarry Smith 1762d382aafbSBarry Smith .seealso: PetscDLLibraryOpen() 1763d382aafbSBarry Smith S*/ 1764d382aafbSBarry Smith typedef struct _n_PetscDLLibrary *PetscDLLibrary; 1765014dd563SJed Brown PETSC_EXTERN PetscDLLibrary PetscDLLibrariesLoaded; 1766014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDLLibraryAppend(MPI_Comm,PetscDLLibrary *,const char[]); 1767014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDLLibraryPrepend(MPI_Comm,PetscDLLibrary *,const char[]); 1768014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDLLibrarySym(MPI_Comm,PetscDLLibrary *,const char[],const char[],void **); 1769014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDLLibraryPrintPath(PetscDLLibrary); 1770014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDLLibraryRetrieve(MPI_Comm,const char[],char *,size_t,PetscBool *); 1771014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDLLibraryOpen(MPI_Comm,const char[],PetscDLLibrary *); 1772014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDLLibraryClose(PetscDLLibrary); 1773d382aafbSBarry Smith 1774d382aafbSBarry Smith /* 1775d382aafbSBarry Smith Useful utility routines 1776d382aafbSBarry Smith */ 1777014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSplitOwnership(MPI_Comm,PetscInt*,PetscInt*); 1778014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSplitOwnershipBlock(MPI_Comm,PetscInt,PetscInt*,PetscInt*); 1779014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSequentialPhaseBegin(MPI_Comm,PetscMPIInt); 1780014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSequentialPhaseEnd(MPI_Comm,PetscMPIInt); 1781014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBarrier(PetscObject); 1782014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMPIDump(FILE*); 1783d382aafbSBarry Smith 1784503cfb0cSBarry Smith /* 1785ace3abfcSBarry Smith PetscNot - negates a logical type value and returns result as a PetscBool 1786503cfb0cSBarry Smith 1787e28ce29aSPatrick Sanan Notes: 1788e28ce29aSPatrick Sanan This is useful in cases like 1789503cfb0cSBarry Smith $ int *a; 1790ace3abfcSBarry Smith $ PetscBool flag = PetscNot(a) 17911cc8b206SBarry Smith where !a would not return a PetscBool because we cannot provide a cast from int to PetscBool in C. 1792503cfb0cSBarry Smith */ 1793d382aafbSBarry Smith #define PetscNot(a) ((a) ? PETSC_FALSE : PETSC_TRUE) 1794503cfb0cSBarry Smith 1795d382aafbSBarry Smith /*MC 1796d382aafbSBarry Smith PetscHelpPrintf - Prints help messages. 1797d382aafbSBarry Smith 1798d382aafbSBarry Smith Synopsis: 1799aaa7dc30SBarry Smith #include <petscsys.h> 1800d382aafbSBarry Smith PetscErrorCode (*PetscHelpPrintf)(const char format[],...); 1801d382aafbSBarry Smith 1802eca87e8dSBarry Smith Not Collective 1803eca87e8dSBarry Smith 1804d382aafbSBarry Smith Input Parameters: 1805d382aafbSBarry Smith . format - the usual printf() format string 1806d382aafbSBarry Smith 1807d382aafbSBarry Smith Level: developer 1808d382aafbSBarry Smith 1809d382aafbSBarry Smith Fortran Note: 1810d382aafbSBarry Smith This routine is not supported in Fortran. 1811d382aafbSBarry Smith 1812d382aafbSBarry Smith Concepts: help messages^printing 1813d382aafbSBarry Smith Concepts: printing^help messages 1814d382aafbSBarry Smith 1815d382aafbSBarry Smith .seealso: PetscFPrintf(), PetscSynchronizedPrintf(), PetscErrorPrintf() 1816d382aafbSBarry Smith M*/ 1817014dd563SJed Brown PETSC_EXTERN PetscErrorCode (*PetscHelpPrintf)(MPI_Comm,const char[],...); 1818d382aafbSBarry Smith 1819fcfd50ebSBarry Smith /* 1820fcfd50ebSBarry Smith Defines PETSc profiling. 1821fcfd50ebSBarry Smith */ 18222c8e378dSBarry Smith #include <petsclog.h> 1823fcfd50ebSBarry Smith 1824fcfd50ebSBarry Smith /* 1825fcfd50ebSBarry Smith Simple PETSc parallel IO for ASCII printing 1826fcfd50ebSBarry Smith */ 1827014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFixFilename(const char[],char[]); 1828014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFOpen(MPI_Comm,const char[],const char[],FILE**); 1829014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFClose(MPI_Comm,FILE*); 1830014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFPrintf(MPI_Comm,FILE*,const char[],...); 1831014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPrintf(MPI_Comm,const char[],...); 1832014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSNPrintf(char*,size_t,const char [],...); 1833014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSNPrintfCount(char*,size_t,const char [],size_t*,...); 1834fcfd50ebSBarry Smith 1835014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscErrorPrintfDefault(const char [],...); 1836014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscErrorPrintfNone(const char [],...); 1837014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscHelpPrintfDefault(MPI_Comm,const char [],...); 1838d382aafbSBarry Smith 1839d382aafbSBarry Smith #if defined(PETSC_HAVE_POPEN) 1840014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPOpen(MPI_Comm,const char[],const char[],const char[],FILE **); 184196a8e8cbSBarry Smith PETSC_EXTERN PetscErrorCode PetscPClose(MPI_Comm,FILE*,int*); 184274ba8654SBarry Smith PETSC_EXTERN PetscErrorCode PetscPOpenSetMachine(const char[]); 1843d382aafbSBarry Smith #endif 1844d382aafbSBarry Smith 1845014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSynchronizedPrintf(MPI_Comm,const char[],...); 1846014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSynchronizedFPrintf(MPI_Comm,FILE*,const char[],...); 18470ec8b6e3SBarry Smith PETSC_EXTERN PetscErrorCode PetscSynchronizedFlush(MPI_Comm,FILE*); 1848014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSynchronizedFGets(MPI_Comm,FILE*,size_t,char[]); 1849014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStartMatlab(MPI_Comm,const char[],const char[],FILE**); 1850014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStartJava(MPI_Comm,const char[],const char[],FILE**); 1851014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetPetscDir(const char*[]); 1852d382aafbSBarry Smith 1853014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPopUpSelect(MPI_Comm,const char*,const char*,int,const char**,int*); 1854d382aafbSBarry Smith 1855d382aafbSBarry Smith /*S 1856d382aafbSBarry Smith PetscContainer - Simple PETSc object that contains a pointer to any required data 1857d382aafbSBarry Smith 1858d382aafbSBarry Smith Level: advanced 1859d382aafbSBarry Smith 1860d382aafbSBarry Smith .seealso: PetscObject, PetscContainerCreate() 1861d382aafbSBarry Smith S*/ 1862014dd563SJed Brown PETSC_EXTERN PetscClassId PETSC_CONTAINER_CLASSID; 1863d382aafbSBarry Smith typedef struct _p_PetscContainer* PetscContainer; 1864014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscContainerGetPointer(PetscContainer,void **); 1865014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscContainerSetPointer(PetscContainer,void *); 1866014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscContainerDestroy(PetscContainer*); 1867014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscContainerCreate(MPI_Comm,PetscContainer *); 1868014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscContainerSetUserDestroy(PetscContainer, PetscErrorCode (*)(void*)); 1869b61ba218SStefano Zampini PETSC_EXTERN PetscErrorCode PetscContainerUserDestroyDefault(void*); 1870d382aafbSBarry Smith 1871d382aafbSBarry Smith /* 1872d382aafbSBarry Smith For use in debuggers 1873d382aafbSBarry Smith */ 1874014dd563SJed Brown PETSC_EXTERN PetscMPIInt PetscGlobalRank; 1875014dd563SJed Brown PETSC_EXTERN PetscMPIInt PetscGlobalSize; 1876014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscIntView(PetscInt,const PetscInt[],PetscViewer); 1877014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRealView(PetscInt,const PetscReal[],PetscViewer); 1878014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscScalarView(PetscInt,const PetscScalar[],PetscViewer); 1879d382aafbSBarry Smith 1880a663daf8SBarry Smith #include <stddef.h> 1881a3aaec0aSJed Brown #include <string.h> /* for memcpy, memset */ 1882d382aafbSBarry Smith #if defined(PETSC_HAVE_STDLIB_H) 1883d382aafbSBarry Smith #include <stdlib.h> 1884d382aafbSBarry Smith #endif 18856c7e564aSBarry Smith 18864a92a979SJed Brown #if defined(PETSC_HAVE_XMMINTRIN_H) && !defined(__CUDACC__) 1887d382aafbSBarry Smith #include <xmmintrin.h> 1888d382aafbSBarry Smith #endif 1889d382aafbSBarry Smith 1890d382aafbSBarry Smith /*@C 1891d382aafbSBarry Smith PetscMemcpy - Copies n bytes, beginning at location b, to the space 1892d382aafbSBarry Smith beginning at location a. The two memory regions CANNOT overlap, use 1893d382aafbSBarry Smith PetscMemmove() in that case. 1894d382aafbSBarry Smith 1895d382aafbSBarry Smith Not Collective 1896d382aafbSBarry Smith 1897d382aafbSBarry Smith Input Parameters: 1898d382aafbSBarry Smith + b - pointer to initial memory space 1899d382aafbSBarry Smith - n - length (in bytes) of space to copy 1900d382aafbSBarry Smith 1901d382aafbSBarry Smith Output Parameter: 1902d382aafbSBarry Smith . a - pointer to copy space 1903d382aafbSBarry Smith 1904d382aafbSBarry Smith Level: intermediate 1905d382aafbSBarry Smith 1906d382aafbSBarry Smith Compile Option: 1907d382aafbSBarry Smith PETSC_PREFER_DCOPY_FOR_MEMCPY will cause the BLAS dcopy() routine to be used 1908d382aafbSBarry Smith for memory copies on double precision values. 1909d382aafbSBarry Smith PETSC_PREFER_COPY_FOR_MEMCPY will cause C code to be used 1910d382aafbSBarry Smith for memory copies on double precision values. 1911d382aafbSBarry Smith PETSC_PREFER_FORTRAN_FORMEMCPY will cause Fortran code to be used 1912d382aafbSBarry Smith for memory copies on double precision values. 1913d382aafbSBarry Smith 1914d382aafbSBarry Smith Note: 1915d382aafbSBarry Smith This routine is analogous to memcpy(). 1916d382aafbSBarry Smith 1917503cfb0cSBarry Smith Developer Note: this is inlined for fastest performance 1918503cfb0cSBarry Smith 1919d382aafbSBarry Smith Concepts: memory^copying 1920d382aafbSBarry Smith Concepts: copying^memory 1921d382aafbSBarry Smith 1922d382aafbSBarry Smith .seealso: PetscMemmove() 1923d382aafbSBarry Smith 1924d382aafbSBarry Smith @*/ 19257087cfbeSBarry Smith PETSC_STATIC_INLINE PetscErrorCode PetscMemcpy(void *a,const void *b,size_t n) 1926d382aafbSBarry Smith { 1927d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 1928c5e4d11fSDmitry Karpeev size_t al = (size_t) a,bl = (size_t) b; 1929c5e4d11fSDmitry Karpeev size_t nl = (size_t) n; 1930a7e36092SMatthew G Knepley PetscFunctionBegin; 1931e32f2f54SBarry Smith if (n > 0 && !b) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_NULL,"Trying to copy from a null pointer"); 1932e32f2f54SBarry Smith if (n > 0 && !a) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_NULL,"Trying to copy to a null pointer"); 1933a7e36092SMatthew G Knepley #else 1934d382aafbSBarry Smith PetscFunctionBegin; 1935a7e36092SMatthew G Knepley #endif 1936a47a537aSLisandro Dalcin if (a != b && n > 0) { 1937d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 1938e47d2de2SBarry Smith if ((al > bl && (al - bl) < nl) || (bl - al) < nl) SETERRQ3(PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"Memory regions overlap: either use PetscMemmov()\n\ 1939d382aafbSBarry Smith or make sure your copy regions and lengths are correct. \n\ 1940d382aafbSBarry Smith Length (bytes) %ld first address %ld second address %ld",nl,al,bl); 1941d382aafbSBarry Smith #endif 1942d382aafbSBarry Smith #if (defined(PETSC_PREFER_DCOPY_FOR_MEMCPY) || defined(PETSC_PREFER_COPY_FOR_MEMCPY) || defined(PETSC_PREFER_FORTRAN_FORMEMCPY)) 1943c5e4d11fSDmitry Karpeev if (!(a % sizeof(PetscScalar)) && !(n % sizeof(PetscScalar))) { 1944d382aafbSBarry Smith size_t len = n/sizeof(PetscScalar); 1945d382aafbSBarry Smith #if defined(PETSC_PREFER_DCOPY_FOR_MEMCPY) 1946c5df96a5SBarry Smith PetscBLASInt one = 1,blen; 1947c5df96a5SBarry Smith PetscErrorCode ierr; 1948c5df96a5SBarry Smith ierr = PetscBLASIntCast(len,&blen);CHKERRQ(ierr); 19498b83055fSJed Brown PetscStackCallBLAS("BLAScopy",BLAScopy_(&blen,(PetscScalar *)b,&one,(PetscScalar *)a,&one)); 1950d382aafbSBarry Smith #elif defined(PETSC_PREFER_FORTRAN_FORMEMCPY) 1951d382aafbSBarry Smith fortrancopy_(&len,(PetscScalar*)b,(PetscScalar*)a); 1952d382aafbSBarry Smith #else 1953d382aafbSBarry Smith size_t i; 1954d382aafbSBarry Smith PetscScalar *x = (PetscScalar*)b, *y = (PetscScalar*)a; 1955d382aafbSBarry Smith for (i=0; i<len; i++) y[i] = x[i]; 1956d382aafbSBarry Smith #endif 1957d382aafbSBarry Smith } else { 1958d382aafbSBarry Smith memcpy((char*)(a),(char*)(b),n); 1959d382aafbSBarry Smith } 1960d382aafbSBarry Smith #else 1961d382aafbSBarry Smith memcpy((char*)(a),(char*)(b),n); 1962d382aafbSBarry Smith #endif 1963d382aafbSBarry Smith } 1964d382aafbSBarry Smith PetscFunctionReturn(0); 1965d382aafbSBarry Smith } 1966d382aafbSBarry Smith 1967d382aafbSBarry Smith /*@C 1968d382aafbSBarry Smith PetscMemzero - Zeros the specified memory. 1969d382aafbSBarry Smith 1970d382aafbSBarry Smith Not Collective 1971d382aafbSBarry Smith 1972d382aafbSBarry Smith Input Parameters: 1973d382aafbSBarry Smith + a - pointer to beginning memory location 1974d382aafbSBarry Smith - n - length (in bytes) of memory to initialize 1975d382aafbSBarry Smith 1976d382aafbSBarry Smith Level: intermediate 1977d382aafbSBarry Smith 1978d382aafbSBarry Smith Compile Option: 1979d382aafbSBarry Smith PETSC_PREFER_BZERO - on certain machines (the IBM RS6000) the bzero() routine happens 1980d382aafbSBarry Smith to be faster than the memset() routine. This flag causes the bzero() routine to be used. 1981d382aafbSBarry Smith 1982503cfb0cSBarry Smith Developer Note: this is inlined for fastest performance 1983503cfb0cSBarry Smith 1984d382aafbSBarry Smith Concepts: memory^zeroing 1985d382aafbSBarry Smith Concepts: zeroing^memory 1986d382aafbSBarry Smith 1987d382aafbSBarry Smith .seealso: PetscMemcpy() 1988d382aafbSBarry Smith @*/ 19897087cfbeSBarry Smith PETSC_STATIC_INLINE PetscErrorCode PetscMemzero(void *a,size_t n) 1990d382aafbSBarry Smith { 1991d382aafbSBarry Smith if (n > 0) { 1992d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 1993e32f2f54SBarry Smith if (!a) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_NULL,"Trying to zero at a null pointer"); 1994d382aafbSBarry Smith #endif 1995d382aafbSBarry Smith #if defined(PETSC_PREFER_ZERO_FOR_MEMZERO) 1996d382aafbSBarry Smith if (!(((long) a) % sizeof(PetscScalar)) && !(n % sizeof(PetscScalar))) { 1997d382aafbSBarry Smith size_t i,len = n/sizeof(PetscScalar); 1998d382aafbSBarry Smith PetscScalar *x = (PetscScalar*)a; 1999d382aafbSBarry Smith for (i=0; i<len; i++) x[i] = 0.0; 2000d382aafbSBarry Smith } else { 2001d382aafbSBarry Smith #elif defined(PETSC_PREFER_FORTRAN_FOR_MEMZERO) 2002d382aafbSBarry Smith if (!(((long) a) % sizeof(PetscScalar)) && !(n % sizeof(PetscScalar))) { 2003d382aafbSBarry Smith PetscInt len = n/sizeof(PetscScalar); 2004d382aafbSBarry Smith fortranzero_(&len,(PetscScalar*)a); 2005d382aafbSBarry Smith } else { 2006d382aafbSBarry Smith #endif 2007d382aafbSBarry Smith #if defined(PETSC_PREFER_BZERO) 2008d382aafbSBarry Smith bzero((char *)a,n); 2009d382aafbSBarry Smith #else 2010d382aafbSBarry Smith memset((char*)a,0,n); 2011d382aafbSBarry Smith #endif 2012d382aafbSBarry Smith #if defined(PETSC_PREFER_ZERO_FOR_MEMZERO) || defined(PETSC_PREFER_FORTRAN_FOR_MEMZERO) 2013d382aafbSBarry Smith } 2014d382aafbSBarry Smith #endif 2015d382aafbSBarry Smith } 2016d382aafbSBarry Smith return 0; 2017d382aafbSBarry Smith } 2018d382aafbSBarry Smith 2019d382aafbSBarry Smith /*MC 2020d382aafbSBarry Smith PetscPrefetchBlock - Prefetches a block of memory 2021d382aafbSBarry Smith 2022eca87e8dSBarry Smith Synopsis: 2023aaa7dc30SBarry Smith #include <petscsys.h> 2024eca87e8dSBarry Smith void PetscPrefetchBlock(const anytype *a,size_t n,int rw,int t) 2025eca87e8dSBarry Smith 2026d382aafbSBarry Smith Not Collective 2027d382aafbSBarry Smith 2028d382aafbSBarry Smith Input Parameters: 2029d382aafbSBarry Smith + a - pointer to first element to fetch (any type but usually PetscInt or PetscScalar) 2030d382aafbSBarry Smith . n - number of elements to fetch 2031d382aafbSBarry Smith . rw - 1 if the memory will be written to, otherwise 0 (ignored by many processors) 203250d8bf02SJed Brown - t - temporal locality (PETSC_PREFETCH_HINT_{NTA,T0,T1,T2}), see note 2033d382aafbSBarry Smith 2034d382aafbSBarry Smith Level: developer 2035d382aafbSBarry Smith 2036d382aafbSBarry Smith Notes: 2037d382aafbSBarry Smith The last two arguments (rw and t) must be compile-time constants. 2038d382aafbSBarry Smith 203950d8bf02SJed Brown Adopting Intel's x86/x86-64 conventions, there are four levels of temporal locality. Not all architectures offer 204050d8bf02SJed Brown equivalent locality hints, but the following macros are always defined to their closest analogue. 204150d8bf02SJed Brown + PETSC_PREFETCH_HINT_NTA - Non-temporal. Prefetches directly to L1, evicts to memory (skips higher level cache unless it was already there when prefetched). 204263cf1ef0SJed Brown . PETSC_PREFETCH_HINT_T0 - Fetch to all levels of cache and evict to the closest level. Use this when the memory will be reused regularly despite necessary eviction from L1. 204363cf1ef0SJed Brown . PETSC_PREFETCH_HINT_T1 - Fetch to level 2 and higher (not L1). 204463cf1ef0SJed Brown - PETSC_PREFETCH_HINT_T2 - Fetch to high-level cache only. (On many systems, T0 and T1 are equivalent.) 2045d382aafbSBarry Smith 2046d382aafbSBarry Smith This function does nothing on architectures that do not support prefetch and never errors (even if passed an invalid 2047d382aafbSBarry Smith address). 2048d382aafbSBarry Smith 2049d382aafbSBarry Smith Concepts: memory 2050d382aafbSBarry Smith M*/ 2051d382aafbSBarry Smith #define PetscPrefetchBlock(a,n,rw,t) do { \ 2052d382aafbSBarry Smith const char *_p = (const char*)(a),*_end = (const char*)((a)+(n)); \ 2053d382aafbSBarry Smith for ( ; _p < _end; _p += PETSC_LEVEL1_DCACHE_LINESIZE) PETSC_Prefetch(_p,(rw),(t)); \ 2054d382aafbSBarry Smith } while (0) 2055d382aafbSBarry Smith 2056d382aafbSBarry Smith /* 2057d382aafbSBarry Smith Determine if some of the kernel computation routines use 2058d382aafbSBarry Smith Fortran (rather than C) for the numerical calculations. On some machines 2059d382aafbSBarry Smith and compilers (like complex numbers) the Fortran version of the routines 2060d382aafbSBarry Smith is faster than the C/C++ versions. The flag --with-fortran-kernels 2061e2e64c6bSBarry Smith should be used with ./configure to turn these on. 2062d382aafbSBarry Smith */ 2063d382aafbSBarry Smith #if defined(PETSC_USE_FORTRAN_KERNELS) 2064d382aafbSBarry Smith 2065d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MULTCRL) 2066d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MULTCRL 2067d382aafbSBarry Smith #endif 2068d382aafbSBarry Smith 20695a11e1b2SBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MULTAIJPERM) 20705a11e1b2SBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MULTAIJPERM 2071d382aafbSBarry Smith #endif 2072d382aafbSBarry Smith 2073d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MULTAIJ) 2074d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MULTAIJ 2075d382aafbSBarry Smith #endif 2076d382aafbSBarry Smith 2077d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MULTTRANSPOSEAIJ) 2078d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MULTTRANSPOSEAIJ 2079d382aafbSBarry Smith #endif 2080d382aafbSBarry Smith 2081d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_NORM) 2082d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_NORM 2083d382aafbSBarry Smith #endif 2084d382aafbSBarry Smith 2085d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MAXPY) 2086d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MAXPY 2087d382aafbSBarry Smith #endif 2088d382aafbSBarry Smith 2089d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_SOLVEAIJ) 2090d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_SOLVEAIJ 2091d382aafbSBarry Smith #endif 2092d382aafbSBarry Smith 2093d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_RELAXAIJ) 2094d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_RELAXAIJ 2095d382aafbSBarry Smith #endif 2096d382aafbSBarry Smith 2097d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_SOLVEBAIJ) 2098d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_SOLVEBAIJ 2099d382aafbSBarry Smith #endif 2100d382aafbSBarry Smith 2101d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MULTADDAIJ) 2102d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MULTADDAIJ 2103d382aafbSBarry Smith #endif 2104d382aafbSBarry Smith 2105d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MDOT) 2106d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MDOT 2107d382aafbSBarry Smith #endif 2108d382aafbSBarry Smith 2109d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_XTIMESY) 2110d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_XTIMESY 2111d382aafbSBarry Smith #endif 2112d382aafbSBarry Smith 2113d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_AYPX) 2114d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_AYPX 2115d382aafbSBarry Smith #endif 2116d382aafbSBarry Smith 2117d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_WAXPY) 2118d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_WAXPY 2119d382aafbSBarry Smith #endif 2120d382aafbSBarry Smith 2121d382aafbSBarry Smith #endif 2122d382aafbSBarry Smith 2123d382aafbSBarry Smith /* 2124d382aafbSBarry Smith Macros for indicating code that should be compiled with a C interface, 2125d382aafbSBarry Smith rather than a C++ interface. Any routines that are dynamically loaded 2126d382aafbSBarry Smith (such as the PCCreate_XXX() routines) must be wrapped so that the name 2127d382aafbSBarry Smith mangler does not change the functions symbol name. This just hides the 2128d382aafbSBarry Smith ugly extern "C" {} wrappers. 2129d382aafbSBarry Smith */ 2130d382aafbSBarry Smith #if defined(__cplusplus) 2131d382aafbSBarry Smith #define EXTERN_C_BEGIN extern "C" { 2132d382aafbSBarry Smith #define EXTERN_C_END } 2133d382aafbSBarry Smith #else 2134d382aafbSBarry Smith #define EXTERN_C_BEGIN 2135d382aafbSBarry Smith #define EXTERN_C_END 2136d382aafbSBarry Smith #endif 2137d382aafbSBarry Smith 2138d382aafbSBarry Smith /* --------------------------------------------------------------------*/ 2139d382aafbSBarry Smith 2140d382aafbSBarry Smith /*MC 2141d382aafbSBarry Smith MPI_Comm - the basic object used by MPI to determine which processes are involved in a 2142d382aafbSBarry Smith communication 2143d382aafbSBarry Smith 2144d382aafbSBarry Smith Level: beginner 2145d382aafbSBarry Smith 2146d382aafbSBarry Smith Note: This manual page is a place-holder because MPICH does not have a manual page for MPI_Comm 2147d382aafbSBarry Smith 2148d382aafbSBarry Smith .seealso: PETSC_COMM_WORLD, PETSC_COMM_SELF 2149d382aafbSBarry Smith M*/ 2150d382aafbSBarry Smith 2151d382aafbSBarry Smith /*MC 2152d382aafbSBarry Smith PetscScalar - PETSc type that represents either a double precision real number, a double precision 2153390e1bf2SBarry Smith complex number, a single precision real number, a __float128 real or complex or a __fp16 real - if the code is configured 2154390e1bf2SBarry Smith with --with-scalar-type=real,complex --with-precision=single,double,__float128,__fp16 2155390e1bf2SBarry Smith 2156e28ce29aSPatrick Sanan Notes: 2157e28ce29aSPatrick Sanan For MPI calls that require datatypes, use MPIU_SCALAR as the datatype for PetscScalar and MPIU_SUM, MPIU_MAX etc for operations. They will automatically work correctly regardless of the size of PetscScalar. 2158d382aafbSBarry Smith 2159d382aafbSBarry Smith Level: beginner 2160d382aafbSBarry Smith 2161e28ce29aSPatrick Sanan .seealso: PetscReal, PetscComplex, PetscInt, MPIU_REAL, MPIU_SCALAR, MPIU_COMPLEX, MPIU_INT 2162d382aafbSBarry Smith M*/ 2163d382aafbSBarry Smith 2164d382aafbSBarry Smith /*MC 21658619c96cSJed Brown PetscComplex - PETSc type that represents a complex number with precision matching that of PetscReal. 21668619c96cSJed Brown 21678619c96cSJed Brown Synopsis: 21688619c96cSJed Brown #include <petscsys.h> 21698619c96cSJed Brown PetscComplex number = 1. + 2.*PETSC_i; 21708619c96cSJed Brown 2171e28ce29aSPatrick Sanan Notes: 2172e28ce29aSPatrick Sanan For MPI calls that require datatypes, use MPIU_COMPLEX as the datatype for PetscComplex and MPIU_SUM etc for operations. 2173e28ce29aSPatrick Sanan They will automatically work correctly regardless of the size of PetscComplex. 2174390e1bf2SBarry Smith 2175390e1bf2SBarry Smith See PetscScalar for details on how to ./configure the size of PetscReal 2176390e1bf2SBarry Smith 21778cd53115SBarry Smith Complex numbers are automatically available if PETSc was able to find a working complex implementation 21788619c96cSJed Brown 2179e28ce29aSPatrick Sanan Level: beginner 2180e28ce29aSPatrick Sanan 2181e28ce29aSPatrick Sanan .seealso: PetscReal, PetscScalar, PetscComplex, PetscInt, MPIU_REAL, MPIU_SCALAR, MPIU_COMPLEX, MPIU_INT, PETSC_i 21828619c96cSJed Brown M*/ 21838619c96cSJed Brown 21848619c96cSJed Brown /*MC 2185d382aafbSBarry Smith PetscReal - PETSc type that represents a real number version of PetscScalar 2186d382aafbSBarry Smith 2187e28ce29aSPatrick Sanan 2188e28ce29aSPatrick Sanan Notes: 2189e28ce29aSPatrick Sanan For MPI calls that require datatypes, use MPIU_REAL as the datatype for PetscScalar and MPIU_SUM, MPIU_MAX, etc. for operations. 2190e28ce29aSPatrick Sanan They will automatically work correctly regardless of the size of PetscReal. 2191e28ce29aSPatrick Sanan 2192e28ce29aSPatrick Sanan See PetscScalar for details on how to ./configure the size of PetscReal. 2193e28ce29aSPatrick Sanan 2194d382aafbSBarry Smith Level: beginner 2195d382aafbSBarry Smith 2196e28ce29aSPatrick Sanan .seealso: PetscScalar, PetscComplex, PetscInt, MPIU_REAL, MPIU_SCALAR, MPIU_COMPLEX, MPIU_INT 2197d382aafbSBarry Smith M*/ 2198d382aafbSBarry Smith 2199d382aafbSBarry Smith /*MC 2200d382aafbSBarry Smith MPIU_SCALAR - MPI datatype corresponding to PetscScalar 2201d382aafbSBarry Smith 2202e28ce29aSPatrick Sanan Notes: 2203e28ce29aSPatrick Sanan In MPI calls that require an MPI datatype that matches a PetscScalar or array of PetscScalar values, pass this value. 2204e28ce29aSPatrick Sanan 2205d382aafbSBarry Smith Level: beginner 2206d382aafbSBarry Smith 2207e28ce29aSPatrick Sanan .seealso: PetscReal, PetscScalar, PetscComplex, PetscInt, MPIU_REAL, MPIU_COMPLEX, MPIU_INT 2208e28ce29aSPatrick Sanan M*/ 2209d382aafbSBarry Smith 2210e28ce29aSPatrick Sanan /*MC 2211e28ce29aSPatrick Sanan MPIU_COMPLEX - MPI datatype corresponding to PetscComplex 2212e28ce29aSPatrick Sanan 2213e28ce29aSPatrick Sanan Notes: 2214e28ce29aSPatrick Sanan In MPI calls that require an MPI datatype that matches a PetscComplex or array of PetscComplex values, pass this value. 2215e28ce29aSPatrick Sanan 2216e28ce29aSPatrick Sanan Level: beginner 2217e28ce29aSPatrick Sanan 2218e28ce29aSPatrick Sanan .seealso: PetscReal, PetscScalar, PetscComplex, PetscInt, MPIU_REAL, MPIU_SCALAR, MPIU_COMPLEX, MPIU_INT, PETSC_i 2219e28ce29aSPatrick Sanan M*/ 2220e28ce29aSPatrick Sanan 2221e28ce29aSPatrick Sanan /*MC 2222e28ce29aSPatrick Sanan MPIU_REAL - MPI datatype corresponding to PetscReal 2223e28ce29aSPatrick Sanan 2224e28ce29aSPatrick Sanan Notes: 2225e28ce29aSPatrick Sanan In MPI calls that require an MPI datatype that matches a PetscReal or array of PetscReal values, pass this value. 2226e28ce29aSPatrick Sanan 2227e28ce29aSPatrick Sanan Level: beginner 2228e28ce29aSPatrick Sanan 2229e28ce29aSPatrick Sanan .seealso: PetscReal, PetscScalar, PetscComplex, PetscInt, MPIU_SCALAR, MPIU_COMPLEX, MPIU_INT 2230d382aafbSBarry Smith M*/ 2231d382aafbSBarry Smith 2232d382aafbSBarry Smith #if defined(PETSC_HAVE_MPIIO) 2233d382aafbSBarry Smith #if !defined(PETSC_WORDS_BIGENDIAN) 2234014dd563SJed Brown PETSC_EXTERN PetscErrorCode MPIU_File_write_all(MPI_File,void*,PetscMPIInt,MPI_Datatype,MPI_Status*); 2235014dd563SJed Brown PETSC_EXTERN PetscErrorCode MPIU_File_read_all(MPI_File,void*,PetscMPIInt,MPI_Datatype,MPI_Status*); 2236d382aafbSBarry Smith #else 2237d382aafbSBarry Smith #define MPIU_File_write_all(a,b,c,d,e) MPI_File_write_all(a,b,c,d,e) 2238d382aafbSBarry Smith #define MPIU_File_read_all(a,b,c,d,e) MPI_File_read_all(a,b,c,d,e) 2239d382aafbSBarry Smith #endif 2240d382aafbSBarry Smith #endif 2241d382aafbSBarry Smith 2242d382aafbSBarry Smith /* the following petsc_static_inline require petscerror.h */ 2243d382aafbSBarry Smith 2244d382aafbSBarry Smith /* Limit MPI to 32-bits */ 2245d382aafbSBarry Smith #define PETSC_MPI_INT_MAX 2147483647 2246d382aafbSBarry Smith #define PETSC_MPI_INT_MIN -2147483647 2247d382aafbSBarry Smith /* Limit BLAS to 32-bits */ 2248d382aafbSBarry Smith #define PETSC_BLAS_INT_MAX 2147483647 2249d382aafbSBarry Smith #define PETSC_BLAS_INT_MIN -2147483647 2250d382aafbSBarry Smith 225161b0d812SBarry Smith /*@C 225261b0d812SBarry Smith PetscBLASIntCast - casts a PetscInt (which may be 64 bits in size) to a PetscBLASInt (which may be 32 bits in size), generates an 225361b0d812SBarry Smith error if the PetscBLASInt is not large enough to hold the number. 225461b0d812SBarry Smith 225561b0d812SBarry Smith Not Collective 225661b0d812SBarry Smith 225761b0d812SBarry Smith Input Parameter: 225861b0d812SBarry Smith . a - the PetscInt value 225961b0d812SBarry Smith 226061b0d812SBarry Smith Output Parameter: 226161b0d812SBarry Smith . b - the resulting PetscBLASInt value 226261b0d812SBarry Smith 226361b0d812SBarry Smith Level: advanced 226461b0d812SBarry Smith 226561b0d812SBarry Smith .seealso: PetscBLASInt, PetscMPIInt, PetscInt, PetscMPIIntCast() 226661b0d812SBarry Smith @*/ 2267c5df96a5SBarry Smith PETSC_STATIC_INLINE PetscErrorCode PetscBLASIntCast(PetscInt a,PetscBLASInt *b) 2268c5df96a5SBarry Smith { 2269c5df96a5SBarry Smith PetscFunctionBegin; 2270ab7117d1SBarry Smith *b = (PetscBLASInt)(a); 2271c5df96a5SBarry Smith #if defined(PETSC_USE_64BIT_INDICES) && !defined(PETSC_HAVE_64BIT_BLAS_INDICES) 2272c5df96a5SBarry Smith if ((a) > PETSC_BLAS_INT_MAX) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Array too long for BLAS/LAPACK"); 2273c5df96a5SBarry Smith #endif 2274c5df96a5SBarry Smith PetscFunctionReturn(0); 2275c5df96a5SBarry Smith } 2276c5df96a5SBarry Smith 227761b0d812SBarry Smith /*@C 227861b0d812SBarry Smith PetscMPIIntCast - casts a PetscInt (which may be 64 bits in size) to a PetscMPIInt (which may be 32 bits in size), generates an 227961b0d812SBarry Smith error if the PetscMPIInt is not large enough to hold the number. 228061b0d812SBarry Smith 228161b0d812SBarry Smith Not Collective 228261b0d812SBarry Smith 228361b0d812SBarry Smith Input Parameter: 228461b0d812SBarry Smith . a - the PetscInt value 228561b0d812SBarry Smith 228661b0d812SBarry Smith Output Parameter: 228761b0d812SBarry Smith . b - the resulting PetscMPIInt value 228861b0d812SBarry Smith 228961b0d812SBarry Smith Level: advanced 229061b0d812SBarry Smith 229161b0d812SBarry Smith .seealso: PetscBLASInt, PetscMPIInt, PetscInt, PetscBLASIntCast() 229261b0d812SBarry Smith @*/ 22934dc2109aSBarry Smith PETSC_STATIC_INLINE PetscErrorCode PetscMPIIntCast(PetscInt a,PetscMPIInt *b) 22944dc2109aSBarry Smith { 22954dc2109aSBarry Smith PetscFunctionBegin; 2296ab7117d1SBarry Smith *b = (PetscMPIInt)(a); 22974dc2109aSBarry Smith #if defined(PETSC_USE_64BIT_INDICES) 22984dc2109aSBarry Smith if ((a) > PETSC_MPI_INT_MAX) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Array too long for MPI"); 22994dc2109aSBarry Smith #endif 23004dc2109aSBarry Smith PetscFunctionReturn(0); 23014dc2109aSBarry Smith } 23024dc2109aSBarry Smith 2303bafee8b4SSatish Balay #define PetscInt64Mult(a,b) ((PetscInt64)(a))*((PetscInt64)(b)) 23042f18eb33SBarry Smith 23052f18eb33SBarry Smith /*@C 23062f18eb33SBarry Smith 23072f18eb33SBarry Smith PetscRealIntMultTruncate - Computes the product of a positive PetscReal and a positive PetscInt and truncates the value to slightly less than the maximal possible value 23082f18eb33SBarry Smith 23092f18eb33SBarry Smith Not Collective 23102f18eb33SBarry Smith 23112f18eb33SBarry Smith Input Parameter: 23122f18eb33SBarry Smith + a - the PetscReal value 23132f18eb33SBarry Smith - b - the second value 23142f18eb33SBarry Smith 2315390e1bf2SBarry Smith Returns: 2316390e1bf2SBarry Smith the result as a PetscInt value 23172f18eb33SBarry Smith 2318bafee8b4SSatish Balay Use PetscInt64Mult() to compute the product of two PetscInt as a PetscInt64 23192f18eb33SBarry Smith Use PetscIntMultTruncate() to compute the product of two positive PetscInt and truncate to fit a PetscInt 23202f18eb33SBarry Smith Use PetscIntMultError() to compute the product of two PetscInt if you wish to generate an error if the result will not fit in a PetscInt 23212f18eb33SBarry Smith 2322e28ce29aSPatrick Sanan Developers Note: 2323e28ce29aSPatrick Sanan We currently assume that PetscInt addition can never overflow, this is obviously wrong but requires many more checks. 23242f18eb33SBarry Smith 23252f18eb33SBarry Smith This is used where we compute approximate sizes for workspace and need to insure the workspace is index-able. 23262f18eb33SBarry Smith 23272f18eb33SBarry Smith Level: advanced 23282f18eb33SBarry Smith 2329390e1bf2SBarry Smith .seealso: PetscBLASInt, PetscMPIInt, PetscInt, PetscBLASIntCast(), PetscInt64Mult() 23302f18eb33SBarry Smith @*/ 23312f18eb33SBarry Smith PETSC_STATIC_INLINE PetscInt PetscRealIntMultTruncate(PetscReal a,PetscInt b) 23322f18eb33SBarry Smith { 2333bafee8b4SSatish Balay PetscInt64 r; 23342f18eb33SBarry Smith 2335bafee8b4SSatish Balay r = (PetscInt64) (a*(PetscReal)b); 23362f18eb33SBarry Smith if (r > PETSC_MAX_INT - 100) r = PETSC_MAX_INT - 100; 23372f18eb33SBarry Smith return (PetscInt) r; 23382f18eb33SBarry Smith } 23392f18eb33SBarry Smith 23402f18eb33SBarry Smith /*@C 23412f18eb33SBarry Smith 23422f18eb33SBarry Smith PetscIntMultTruncate - Computes the product of two positive PetscInt and truncates the value to slightly less than the maximal possible value 23432f18eb33SBarry Smith 23442f18eb33SBarry Smith Not Collective 23452f18eb33SBarry Smith 23462f18eb33SBarry Smith Input Parameter: 23472f18eb33SBarry Smith + a - the PetscInt value 23482f18eb33SBarry Smith - b - the second value 23492f18eb33SBarry Smith 2350390e1bf2SBarry Smith Returns: 2351390e1bf2SBarry Smith the result as a PetscInt value 23522f18eb33SBarry Smith 2353bafee8b4SSatish Balay Use PetscInt64Mult() to compute the product of two PetscInt as a PetscInt64 23542f18eb33SBarry Smith Use PetscRealIntMultTruncate() to compute the product of a PetscReal and a PetscInt and truncate to fit a PetscInt 23552f18eb33SBarry Smith Use PetscIntMultError() to compute the product of two PetscInt if you wish to generate an error if the result will not fit in a PetscInt 23562f18eb33SBarry Smith 23572f18eb33SBarry Smith Developers Note: We currently assume that PetscInt addition can never overflow, this is obviously wrong but requires many more checks. 23582f18eb33SBarry Smith 23592f18eb33SBarry Smith This is used where we compute approximate sizes for workspace and need to insure the workspace is index-able. 23602f18eb33SBarry Smith 23612f18eb33SBarry Smith Level: advanced 23622f18eb33SBarry Smith 2363390e1bf2SBarry Smith .seealso: PetscBLASInt, PetscMPIInt, PetscInt, PetscBLASIntCast(), PetscInt64Mult() 23642f18eb33SBarry Smith @*/ 23652f18eb33SBarry Smith PETSC_STATIC_INLINE PetscInt PetscIntMultTruncate(PetscInt a,PetscInt b) 23662f18eb33SBarry Smith { 2367bafee8b4SSatish Balay PetscInt64 r; 23682f18eb33SBarry Smith 2369bafee8b4SSatish Balay r = PetscInt64Mult(a,b); 23702f18eb33SBarry Smith if (r > PETSC_MAX_INT - 100) r = PETSC_MAX_INT - 100; 23712f18eb33SBarry Smith return (PetscInt) r; 23722f18eb33SBarry Smith } 23732f18eb33SBarry Smith 2374f91af8c7SBarry Smith /*@C 2375f91af8c7SBarry Smith 2376f91af8c7SBarry Smith PetscIntSumTruncate - Computes the sum of two positive PetscInt and truncates the value to slightly less than the maximal possible value 2377f91af8c7SBarry Smith 2378f91af8c7SBarry Smith Not Collective 2379f91af8c7SBarry Smith 2380f91af8c7SBarry Smith Input Parameter: 2381f91af8c7SBarry Smith + a - the PetscInt value 2382f91af8c7SBarry Smith - b - the second value 2383f91af8c7SBarry Smith 2384390e1bf2SBarry Smith Returns: 2385390e1bf2SBarry Smith the result as a PetscInt value 2386f91af8c7SBarry Smith 2387bafee8b4SSatish Balay Use PetscInt64Mult() to compute the product of two PetscInt as a PetscInt64 2388f91af8c7SBarry Smith Use PetscRealIntMultTruncate() to compute the product of a PetscReal and a PetscInt and truncate to fit a PetscInt 2389f91af8c7SBarry Smith Use PetscIntMultError() to compute the product of two PetscInt if you wish to generate an error if the result will not fit in a PetscInt 2390f91af8c7SBarry Smith 2391f91af8c7SBarry Smith This is used where we compute approximate sizes for workspace and need to insure the workspace is index-able. 2392f91af8c7SBarry Smith 2393f91af8c7SBarry Smith Level: advanced 2394f91af8c7SBarry Smith 2395390e1bf2SBarry Smith .seealso: PetscBLASInt, PetscMPIInt, PetscInt, PetscBLASIntCast(), PetscInt64Mult() 2396f91af8c7SBarry Smith @*/ 2397f91af8c7SBarry Smith PETSC_STATIC_INLINE PetscInt PetscIntSumTruncate(PetscInt a,PetscInt b) 2398f91af8c7SBarry Smith { 2399bafee8b4SSatish Balay PetscInt64 r; 2400f91af8c7SBarry Smith 2401bafee8b4SSatish Balay r = ((PetscInt64)a) + ((PetscInt64)b); 2402f91af8c7SBarry Smith if (r > PETSC_MAX_INT - 100) r = PETSC_MAX_INT - 100; 2403f91af8c7SBarry Smith return (PetscInt) r; 2404f91af8c7SBarry Smith } 2405f91af8c7SBarry Smith 24062f18eb33SBarry Smith /*@C 24072f18eb33SBarry Smith 24082f18eb33SBarry Smith PetscIntMultError - Computes the product of two positive PetscInt and generates an error with overflow. 24092f18eb33SBarry Smith 24102f18eb33SBarry Smith Not Collective 24112f18eb33SBarry Smith 24122f18eb33SBarry Smith Input Parameter: 24132f18eb33SBarry Smith + a - the PetscInt value 24142f18eb33SBarry Smith - b - the second value 24152f18eb33SBarry Smith 24162f18eb33SBarry Smith Output Parameter:ma 2417390e1bf2SBarry Smith . result - the result as a PetscInt value, or NULL if you do not want the result, you just want to check if it overflows 24182f18eb33SBarry Smith 2419bafee8b4SSatish Balay Use PetscInt64Mult() to compute the product of two 32 bit PetscInt and store in a PetscInt64 24202f18eb33SBarry Smith Use PetscIntMultTruncate() to compute the product of two PetscInt and truncate it to fit in a PetscInt 24212f18eb33SBarry Smith 2422220afb94SBarry Smith Developers Note: We currently assume that PetscInt addition does not overflow, this is obviously wrong but requires many more checks. 24232f18eb33SBarry Smith 24242f18eb33SBarry Smith Level: advanced 24252f18eb33SBarry Smith 2426220afb94SBarry Smith .seealso: PetscBLASInt, PetscMPIInt, PetscInt, PetscBLASIntCast(), PetscIntMult64(), PetscIntSumError() 24272f18eb33SBarry Smith @*/ 24282f18eb33SBarry Smith PETSC_STATIC_INLINE PetscErrorCode PetscIntMultError(PetscInt a,PetscInt b,PetscInt *result) 24292f18eb33SBarry Smith { 2430bafee8b4SSatish Balay PetscInt64 r; 24312f18eb33SBarry Smith 24322f18eb33SBarry Smith PetscFunctionBegin; 2433bafee8b4SSatish Balay r = PetscInt64Mult(a,b); 24342f18eb33SBarry Smith #if !defined(PETSC_USE_64BIT_INDICES) 24352f18eb33SBarry Smith if (r > PETSC_MAX_INT) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_SUP,"Product of two integer %d %d overflow, you must ./configure PETSc with --with-64-bit-indices for the case you are running",a,b); 24362f18eb33SBarry Smith #endif 2437f91af8c7SBarry Smith if (result) *result = (PetscInt) r; 2438f91af8c7SBarry Smith PetscFunctionReturn(0); 2439f91af8c7SBarry Smith } 2440f91af8c7SBarry Smith 2441f91af8c7SBarry Smith /*@C 2442f91af8c7SBarry Smith 2443fbfcfee5SBarry Smith PetscIntSumError - Computes the sum of two positive PetscInt and generates an error with overflow. 2444f91af8c7SBarry Smith 2445f91af8c7SBarry Smith Not Collective 2446f91af8c7SBarry Smith 2447f91af8c7SBarry Smith Input Parameter: 2448f91af8c7SBarry Smith + a - the PetscInt value 2449f91af8c7SBarry Smith - b - the second value 2450f91af8c7SBarry Smith 2451f91af8c7SBarry Smith Output Parameter:ma 2452390e1bf2SBarry Smith . c - the result as a PetscInt value, or NULL if you do not want the result, you just want to check if it overflows 2453f91af8c7SBarry Smith 2454bafee8b4SSatish Balay Use PetscInt64Mult() to compute the product of two 32 bit PetscInt and store in a PetscInt64 2455f91af8c7SBarry Smith Use PetscIntMultTruncate() to compute the product of two PetscInt and truncate it to fit in a PetscInt 2456f91af8c7SBarry Smith 2457f91af8c7SBarry Smith Level: advanced 2458f91af8c7SBarry Smith 2459390e1bf2SBarry Smith .seealso: PetscBLASInt, PetscMPIInt, PetscInt, PetscBLASIntCast(), PetscInt64Mult() 2460f91af8c7SBarry Smith @*/ 2461f91af8c7SBarry Smith PETSC_STATIC_INLINE PetscErrorCode PetscIntSumError(PetscInt a,PetscInt b,PetscInt *result) 2462f91af8c7SBarry Smith { 2463bafee8b4SSatish Balay PetscInt64 r; 2464f91af8c7SBarry Smith 2465f91af8c7SBarry Smith PetscFunctionBegin; 2466bafee8b4SSatish Balay r = ((PetscInt64)a) + ((PetscInt64)b); 2467f91af8c7SBarry Smith #if !defined(PETSC_USE_64BIT_INDICES) 2468f91af8c7SBarry Smith if (r > PETSC_MAX_INT) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_SUP,"Sum of two integer %d %d overflow, you must ./configure PETSc with --with-64-bit-indices for the case you are running",a,b); 2469f91af8c7SBarry Smith #endif 2470f91af8c7SBarry Smith if (result) *result = (PetscInt) r; 24712f18eb33SBarry Smith PetscFunctionReturn(0); 24722f18eb33SBarry Smith } 2473c5df96a5SBarry Smith 2474d382aafbSBarry Smith /* 24752981ebdbSBarry Smith The IBM include files define hz, here we hide it so that it may be used as a regular user variable. 2476d382aafbSBarry Smith */ 2477d382aafbSBarry Smith #if defined(hz) 2478d382aafbSBarry Smith #undef hz 2479d382aafbSBarry Smith #endif 2480d382aafbSBarry Smith 2481d382aafbSBarry Smith /* For arrays that contain filenames or paths */ 2482d382aafbSBarry Smith 2483d382aafbSBarry Smith 2484d382aafbSBarry Smith #if defined(PETSC_HAVE_LIMITS_H) 2485d382aafbSBarry Smith #include <limits.h> 2486d382aafbSBarry Smith #endif 2487d382aafbSBarry Smith #if defined(PETSC_HAVE_SYS_PARAM_H) 2488d382aafbSBarry Smith #include <sys/param.h> 2489d382aafbSBarry Smith #endif 2490d382aafbSBarry Smith #if defined(PETSC_HAVE_SYS_TYPES_H) 2491d382aafbSBarry Smith #include <sys/types.h> 2492d382aafbSBarry Smith #endif 2493d382aafbSBarry Smith #if defined(MAXPATHLEN) 2494d382aafbSBarry Smith # define PETSC_MAX_PATH_LEN MAXPATHLEN 2495d382aafbSBarry Smith #elif defined(MAX_PATH) 2496d382aafbSBarry Smith # define PETSC_MAX_PATH_LEN MAX_PATH 2497d382aafbSBarry Smith #elif defined(_MAX_PATH) 2498d382aafbSBarry Smith # define PETSC_MAX_PATH_LEN _MAX_PATH 2499d382aafbSBarry Smith #else 2500d382aafbSBarry Smith # define PETSC_MAX_PATH_LEN 4096 2501d382aafbSBarry Smith #endif 2502d382aafbSBarry Smith 2503d382aafbSBarry Smith /*MC 2504d382aafbSBarry Smith 250566d79e26SBarry Smith PETSC_VERSION - This manual page provides information about how PETSc documents and uses its version information. This information is available to both C/C++ 250666d79e26SBarry Smith and Fortran compilers when petscsys.h is included. 250766d79e26SBarry Smith 250866d79e26SBarry Smith 250966d79e26SBarry Smith The current PETSc version and the API for accessing it are defined in petscversion.h 251066d79e26SBarry Smith 251166d79e26SBarry Smith The complete version number is given as the triple PETSC_VERSION_MAJOR.PETSC_VERSION_MINOR.PETSC_VERSION_SUBMINOR (in short hand x.y.z) 251266d79e26SBarry Smith 251366d79e26SBarry Smith A change in the minor version number (y) indicates possible/likely changes in the PETSc API. Note this is different than with the semantic versioning convention 251466d79e26SBarry Smith where only a change in the major version number (x) indicates a change in the API. 251566d79e26SBarry Smith 251666d79e26SBarry Smith A subminor greater than zero indicates a patch release. Version x.y.z maintains source and binary compatibility with version x.y.w for all z and w 251766d79e26SBarry Smith 251866d79e26SBarry Smith Use the macros PETSC_VERSION_EQ(x,y,z), PETSC_VERSION_LT(x,y,z), PETSC_VERSION_LE(x,y,z), PETSC_VERSION_GT(x,y,z), 251966d79e26SBarry Smith PETSC_VERSION_GE(x,y,z) to determine if the current version is equal to, less than, less than or equal to, greater than or greater than or equal to a given 252066d79e26SBarry Smith version number (x.y.z). 252166d79e26SBarry Smith 252266d79e26SBarry Smith PETSC_RELEASE_DATE is the date the x.y version was released (i.e. the version before any patch releases) 252366d79e26SBarry Smith 252466d79e26SBarry Smith PETSC_VERSION_DATE is the date the x.y.z version was released 252566d79e26SBarry Smith 252666d79e26SBarry Smith PETSC_VERSION_GIT is the last git commit to the repository given in the form vx.y.z-wwwww 252766d79e26SBarry Smith 252866d79e26SBarry Smith PETSC_VERSION_DATE_GIT is the date of the last git commit to the repository 252966d79e26SBarry Smith 253066d79e26SBarry Smith Level: intermediate 253166d79e26SBarry Smith 253266d79e26SBarry Smith PETSC_VERSION_() and PETSC_VERSION_PATCH are deprecated and will eventually be removed. For several releases PETSC_VERSION_PATCH is always 0 253366d79e26SBarry Smith 253466d79e26SBarry Smith M*/ 253566d79e26SBarry Smith 253666d79e26SBarry Smith /*MC 253766d79e26SBarry Smith 25381b266c99SBarry Smith UsingFortran - To use PETSc with Fortran you must use both PETSc include files and modules. At the beginning 25391b266c99SBarry Smith of every function and module definition you need something like 2540d382aafbSBarry Smith 2541d382aafbSBarry Smith $ 2542af0996ceSBarry Smith $#include "petsc/finclude/petscXXX.h" 25430f665fc7SPatrick Sanan $ use petscXXX 25441b266c99SBarry Smith 2545692afcd8SPatrick Sanan You can declare PETSc variables using either of the following. 25461b266c99SBarry Smith 2547d382aafbSBarry Smith $ XXX variablename 25481b266c99SBarry Smith $ type(tXXX) variablename 25491b266c99SBarry Smith 2550692afcd8SPatrick Sanan For example, 25511b266c99SBarry Smith 2552bfc4c25eSBarry Smith $#include "petsc/finclude/petscvec.h" 25531b266c99SBarry Smith $ use petscvec 2554d382aafbSBarry Smith $ 2555692afcd8SPatrick Sanan $ Vec b 2556692afcd8SPatrick Sanan $ type(tVec) x 2557d382aafbSBarry Smith 2558d382aafbSBarry Smith Level: beginner 2559d382aafbSBarry Smith 2560d382aafbSBarry Smith M*/ 2561d382aafbSBarry Smith 2562014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetArchType(char[],size_t); 2563014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetHostName(char[],size_t); 2564014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetUserName(char[],size_t); 2565014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetProgramName(char[],size_t); 2566014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSetProgramName(const char[]); 2567014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetDate(char[],size_t); 256827710113SBarry Smith PETSC_EXTERN PetscErrorCode PetscGetVersion(char[], size_t); 25695f309d01SBarry Smith PETSC_EXTERN PetscErrorCode PetscGetVersionNumber(PetscInt*,PetscInt*,PetscInt*,PetscInt*); 2570d382aafbSBarry Smith 2571014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortInt(PetscInt,PetscInt[]); 257222ab5688SLisandro Dalcin PETSC_EXTERN PetscErrorCode PetscSortedRemoveDupsInt(PetscInt*,PetscInt[]); 2573014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortRemoveDupsInt(PetscInt*,PetscInt[]); 257460e03357SMatthew G Knepley PETSC_EXTERN PetscErrorCode PetscFindInt(PetscInt, PetscInt, const PetscInt[], PetscInt*); 2575d2aeb606SJed Brown PETSC_EXTERN PetscErrorCode PetscFindMPIInt(PetscMPIInt, PetscInt, const PetscMPIInt[], PetscInt*); 2576014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortIntWithPermutation(PetscInt,const PetscInt[],PetscInt[]); 2577014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortStrWithPermutation(PetscInt,const char*[],PetscInt[]); 2578014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortIntWithArray(PetscInt,PetscInt[],PetscInt[]); 25796c2863d0SBarry Smith PETSC_EXTERN PetscErrorCode PetscSortIntWithArrayPair(PetscInt,PetscInt[],PetscInt[],PetscInt[]); 258017d7d925SStefano Zampini PETSC_EXTERN PetscErrorCode PetscSortMPIInt(PetscInt,PetscMPIInt[]); 258117d7d925SStefano Zampini PETSC_EXTERN PetscErrorCode PetscSortRemoveDupsMPIInt(PetscInt*,PetscMPIInt[]); 2582014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortMPIIntWithArray(PetscMPIInt,PetscMPIInt[],PetscMPIInt[]); 2583014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortIntWithScalarArray(PetscInt,PetscInt[],PetscScalar[]); 258417df18f2SToby Isaac PETSC_EXTERN PetscErrorCode PetscSortIntWithDataArray(PetscInt,PetscInt[],void*,size_t,void*); 2585014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortReal(PetscInt,PetscReal[]); 258639f41f7fSStefano Zampini PETSC_EXTERN PetscErrorCode PetscSortRealWithArrayInt(PetscInt,PetscReal[],PetscInt[]); 2587014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortRealWithPermutation(PetscInt,const PetscReal[],PetscInt[]); 2588745b41b2SMatthew G. Knepley PETSC_EXTERN PetscErrorCode PetscSortRemoveDupsReal(PetscInt*,PetscReal[]); 258939f41f7fSStefano Zampini PETSC_EXTERN PetscErrorCode PetscFindReal(PetscReal,PetscInt,const PetscReal[],PetscReal,PetscInt*); 2590014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortSplit(PetscInt,PetscInt,PetscScalar[],PetscInt[]); 2591014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortSplitReal(PetscInt,PetscInt,PetscReal[],PetscInt[]); 2592014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscProcessTree(PetscInt,const PetscBool [],const PetscInt[],PetscInt*,PetscInt**,PetscInt**,PetscInt**,PetscInt**); 25936c2863d0SBarry Smith PETSC_EXTERN PetscErrorCode PetscMergeIntArrayPair(PetscInt,const PetscInt[],const PetscInt[],PetscInt,const PetscInt[],const PetscInt[],PetscInt*,PetscInt**,PetscInt**); 25946c2863d0SBarry Smith PETSC_EXTERN PetscErrorCode PetscMergeIntArray(PetscInt,const PetscInt[],PetscInt,const PetscInt[],PetscInt*,PetscInt**); 2595e498c390SJed Brown PETSC_EXTERN PetscErrorCode PetscMergeMPIIntArray(PetscInt,const PetscMPIInt[],PetscInt,const PetscMPIInt[],PetscInt*,PetscMPIInt**); 2596d382aafbSBarry Smith 2597014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSetDisplay(void); 2598014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetDisplay(char[],size_t); 2599d382aafbSBarry Smith 260076bdecfbSBarry Smith /*J 2601d382aafbSBarry Smith PetscRandomType - String with the name of a PETSc randomizer 2602d382aafbSBarry Smith 2603d382aafbSBarry Smith Level: beginner 2604d382aafbSBarry Smith 2605e28ce29aSPatrick Sanan Notes: 2606e28ce29aSPatrick Sanan To use SPRNG or RANDOM123 you must have ./configure PETSc 260725ccb61fSToby Isaac with the option --download-sprng or --download-random123 2608d382aafbSBarry Smith 26098f6c3df8SBarry Smith .seealso: PetscRandomSetType(), PetscRandom, PetscRandomCreate() 261076bdecfbSBarry Smith J*/ 261119fd82e9SBarry Smith typedef const char* PetscRandomType; 2612d382aafbSBarry Smith #define PETSCRAND "rand" 2613d382aafbSBarry Smith #define PETSCRAND48 "rand48" 2614d382aafbSBarry Smith #define PETSCSPRNG "sprng" 2615c5e4d11fSDmitry Karpeev #define PETSCRANDER48 "rander48" 261625ccb61fSToby Isaac #define PETSCRANDOM123 "random123" 2617d382aafbSBarry Smith 2618d382aafbSBarry Smith /* Logging support */ 2619014dd563SJed Brown PETSC_EXTERN PetscClassId PETSC_RANDOM_CLASSID; 2620d382aafbSBarry Smith 2621607a6623SBarry Smith PETSC_EXTERN PetscErrorCode PetscRandomInitializePackage(void); 2622d382aafbSBarry Smith 2623d382aafbSBarry Smith /*S 2624d382aafbSBarry Smith PetscRandom - Abstract PETSc object that manages generating random numbers 2625d382aafbSBarry Smith 2626d382aafbSBarry Smith Level: intermediate 2627d382aafbSBarry Smith 2628d382aafbSBarry Smith Concepts: random numbers 2629d382aafbSBarry Smith 2630d382aafbSBarry Smith .seealso: PetscRandomCreate(), PetscRandomGetValue(), PetscRandomType 2631d382aafbSBarry Smith S*/ 2632d382aafbSBarry Smith typedef struct _p_PetscRandom* PetscRandom; 2633d382aafbSBarry Smith 2634d382aafbSBarry Smith /* Dynamic creation and loading functions */ 2635140e18c1SBarry Smith PETSC_EXTERN PetscFunctionList PetscRandomList; 2636d382aafbSBarry Smith 2637bdf89e91SBarry Smith PETSC_EXTERN PetscErrorCode PetscRandomRegister(const char[],PetscErrorCode (*)(PetscRandom)); 263819fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode PetscRandomSetType(PetscRandom, PetscRandomType); 2639014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomSetFromOptions(PetscRandom); 264019fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode PetscRandomGetType(PetscRandom, PetscRandomType*); 2641685405a1SBarry Smith PETSC_STATIC_INLINE PetscErrorCode PetscRandomViewFromOptions(PetscRandom A,PetscObject obj,const char name[]) {return PetscObjectViewFromOptions((PetscObject)A,obj,name);} 2642014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomView(PetscRandom,PetscViewer); 2643d382aafbSBarry Smith 2644014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomCreate(MPI_Comm,PetscRandom*); 2645014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomGetValue(PetscRandom,PetscScalar*); 2646014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomGetValueReal(PetscRandom,PetscReal*); 2647014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomGetInterval(PetscRandom,PetscScalar*,PetscScalar*); 2648014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomSetInterval(PetscRandom,PetscScalar,PetscScalar); 2649014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomSetSeed(PetscRandom,unsigned long); 2650014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomGetSeed(PetscRandom,unsigned long *); 2651014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomSeed(PetscRandom); 2652014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomDestroy(PetscRandom*); 2653d382aafbSBarry Smith 2654014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetFullPath(const char[],char[],size_t); 2655014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetRelativePath(const char[],char[],size_t); 2656014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetWorkingDirectory(char[],size_t); 2657014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetRealPath(const char[],char[]); 2658014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetHomeDirectory(char[],size_t); 2659014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscTestFile(const char[],char,PetscBool *); 2660014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscTestDirectory(const char[],char,PetscBool *); 266197540f07SSatish Balay PETSC_EXTERN PetscErrorCode PetscMkdir(const char[]); 266297540f07SSatish Balay PETSC_EXTERN PetscErrorCode PetscRMTree(const char[]); 2663d382aafbSBarry Smith 2664014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBinaryRead(int,void*,PetscInt,PetscDataType); 2665014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBinarySynchronizedRead(MPI_Comm,int,void*,PetscInt,PetscDataType); 2666014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBinarySynchronizedWrite(MPI_Comm,int,void*,PetscInt,PetscDataType,PetscBool ); 2667014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBinaryWrite(int,void*,PetscInt,PetscDataType,PetscBool ); 2668014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBinaryOpen(const char[],PetscFileMode,int *); 2669014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBinaryClose(int); 2670014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSharedTmp(MPI_Comm,PetscBool *); 2671014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSharedWorkingDirectory(MPI_Comm,PetscBool *); 2672014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetTmp(MPI_Comm,char[],size_t); 2673014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFileRetrieve(MPI_Comm,const char[],char[],size_t,PetscBool *); 2674014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscLs(MPI_Comm,const char[],char[],size_t,PetscBool *); 2675c891a504SStefano Zampini #if defined(PETSC_USE_SOCKET_VIEWER) 2676e2fc02c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscOpenSocket(const char[],int,int*); 2677c891a504SStefano Zampini #endif 2678d382aafbSBarry Smith 2679d382aafbSBarry Smith /* 2680d382aafbSBarry Smith In binary files variables are stored using the following lengths, 2681d382aafbSBarry Smith regardless of how they are stored in memory on any one particular 2682d382aafbSBarry Smith machine. Use these rather then sizeof() in computing sizes for 2683d382aafbSBarry Smith PetscBinarySeek(). 2684d382aafbSBarry Smith */ 2685d382aafbSBarry Smith #define PETSC_BINARY_INT_SIZE (32/8) 2686d382aafbSBarry Smith #define PETSC_BINARY_FLOAT_SIZE (32/8) 2687d382aafbSBarry Smith #define PETSC_BINARY_CHAR_SIZE (8/8) 2688d382aafbSBarry Smith #define PETSC_BINARY_SHORT_SIZE (16/8) 2689d382aafbSBarry Smith #define PETSC_BINARY_DOUBLE_SIZE (64/8) 2690d382aafbSBarry Smith #define PETSC_BINARY_SCALAR_SIZE sizeof(PetscScalar) 2691d382aafbSBarry Smith 2692d382aafbSBarry Smith /*E 2693d382aafbSBarry Smith PetscBinarySeekType - argument to PetscBinarySeek() 2694d382aafbSBarry Smith 2695d382aafbSBarry Smith Level: advanced 2696d382aafbSBarry Smith 2697d382aafbSBarry Smith .seealso: PetscBinarySeek(), PetscBinarySynchronizedSeek() 2698d382aafbSBarry Smith E*/ 2699d382aafbSBarry Smith typedef enum {PETSC_BINARY_SEEK_SET = 0,PETSC_BINARY_SEEK_CUR = 1,PETSC_BINARY_SEEK_END = 2} PetscBinarySeekType; 2700014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBinarySeek(int,off_t,PetscBinarySeekType,off_t*); 2701014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBinarySynchronizedSeek(MPI_Comm,int,off_t,PetscBinarySeekType,off_t*); 2702014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscByteSwap(void *,PetscDataType,PetscInt); 2703d382aafbSBarry Smith 2704014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSetDebugTerminal(const char[]); 2705014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSetDebugger(const char[],PetscBool ); 2706014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSetDefaultDebugger(void); 2707014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSetDebuggerFromString(const char*); 2708014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscAttachDebugger(void); 2709014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStopForDebugger(void); 2710d382aafbSBarry Smith 2711014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGatherNumberOfMessages(MPI_Comm,const PetscMPIInt[],const PetscMPIInt[],PetscMPIInt*); 2712014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGatherMessageLengths(MPI_Comm,PetscMPIInt,PetscMPIInt,const PetscMPIInt[],PetscMPIInt**,PetscMPIInt**); 2713014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGatherMessageLengths2(MPI_Comm,PetscMPIInt,PetscMPIInt,const PetscMPIInt[],const PetscMPIInt[],PetscMPIInt**,PetscMPIInt**,PetscMPIInt**); 2714014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPostIrecvInt(MPI_Comm,PetscMPIInt,PetscMPIInt,const PetscMPIInt[],const PetscMPIInt[],PetscInt***,MPI_Request**); 2715014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPostIrecvScalar(MPI_Comm,PetscMPIInt,PetscMPIInt,const PetscMPIInt[],const PetscMPIInt[],PetscScalar***,MPI_Request**); 2716cf4b5b4fSJed Brown PETSC_EXTERN PetscErrorCode PetscCommBuildTwoSided(MPI_Comm,PetscMPIInt,MPI_Datatype,PetscMPIInt,const PetscMPIInt*,const void*,PetscMPIInt*,PetscMPIInt**,void*) 2717cf4b5b4fSJed Brown PetscAttrMPIPointerWithType(6,3); 2718d815da10SJed Brown PETSC_EXTERN PetscErrorCode PetscCommBuildTwoSidedF(MPI_Comm,PetscMPIInt,MPI_Datatype,PetscMPIInt,const PetscMPIInt[],const void*,PetscMPIInt*,PetscMPIInt**,void*,PetscMPIInt, 2719d815da10SJed Brown PetscErrorCode (*send)(MPI_Comm,const PetscMPIInt[],PetscMPIInt,PetscMPIInt,void*,MPI_Request[],void*), 2720d815da10SJed Brown PetscErrorCode (*recv)(MPI_Comm,const PetscMPIInt[],PetscMPIInt,void*,MPI_Request[],void*),void *ctx) 2721d815da10SJed Brown PetscAttrMPIPointerWithType(6,3); 27226afbe7ddSJed Brown PETSC_EXTERN PetscErrorCode PetscCommBuildTwoSidedFReq(MPI_Comm,PetscMPIInt,MPI_Datatype,PetscMPIInt,const PetscMPIInt[],const void*,PetscMPIInt*,PetscMPIInt**,void*,PetscMPIInt, 27236afbe7ddSJed Brown MPI_Request**,MPI_Request**, 27246afbe7ddSJed Brown PetscErrorCode (*send)(MPI_Comm,const PetscMPIInt[],PetscMPIInt,PetscMPIInt,void*,MPI_Request[],void*), 27256afbe7ddSJed Brown PetscErrorCode (*recv)(MPI_Comm,const PetscMPIInt[],PetscMPIInt,void*,MPI_Request[],void*),void *ctx) 27266afbe7ddSJed Brown PetscAttrMPIPointerWithType(6,3); 2727d382aafbSBarry Smith 27286145cd65SJed Brown /*E 27296145cd65SJed Brown PetscBuildTwoSidedType - algorithm for setting up two-sided communication 27306145cd65SJed Brown 27316145cd65SJed Brown $ PETSC_BUILDTWOSIDED_ALLREDUCE - classical algorithm using an MPI_Allreduce with 27326145cd65SJed Brown $ a buffer of length equal to the communicator size. Not memory-scalable due to 27336145cd65SJed Brown $ the large reduction size. Requires only MPI-1. 27346145cd65SJed Brown $ PETSC_BUILDTWOSIDED_IBARRIER - nonblocking algorithm based on MPI_Issend and MPI_Ibarrier. 27356145cd65SJed Brown $ Proved communication-optimal in Hoefler, Siebert, and Lumsdaine (2010). Requires MPI-3. 27361654bf6bSJed Brown $ PETSC_BUILDTWOSIDED_REDSCATTER - similar to above, but use more optimized function 27371654bf6bSJed Brown $ that only communicates the part of the reduction that is necessary. Requires MPI-2. 27386145cd65SJed Brown 27396145cd65SJed Brown Level: developer 27406145cd65SJed Brown 27416145cd65SJed Brown .seealso: PetscCommBuildTwoSided(), PetscCommBuildTwoSidedSetType(), PetscCommBuildTwoSidedGetType() 27426145cd65SJed Brown E*/ 27436145cd65SJed Brown typedef enum { 27446145cd65SJed Brown PETSC_BUILDTWOSIDED_NOTSET = -1, 27456145cd65SJed Brown PETSC_BUILDTWOSIDED_ALLREDUCE = 0, 27461654bf6bSJed Brown PETSC_BUILDTWOSIDED_IBARRIER = 1, 274712af867fSJed Brown PETSC_BUILDTWOSIDED_REDSCATTER = 2 27486145cd65SJed Brown /* Updates here must be accompanied by updates in finclude/petscsys.h and the string array in mpits.c */ 27496145cd65SJed Brown } PetscBuildTwoSidedType; 27506145cd65SJed Brown PETSC_EXTERN const char *const PetscBuildTwoSidedTypes[]; 27516145cd65SJed Brown PETSC_EXTERN PetscErrorCode PetscCommBuildTwoSidedSetType(MPI_Comm,PetscBuildTwoSidedType); 27526145cd65SJed Brown PETSC_EXTERN PetscErrorCode PetscCommBuildTwoSidedGetType(MPI_Comm,PetscBuildTwoSidedType*); 27536145cd65SJed Brown 2754014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSSEIsEnabled(MPI_Comm,PetscBool *,PetscBool *); 2755d382aafbSBarry Smith 2756d382aafbSBarry Smith /*E 2757d382aafbSBarry Smith InsertMode - Whether entries are inserted or added into vectors or matrices 2758d382aafbSBarry Smith 2759d382aafbSBarry Smith Level: beginner 2760d382aafbSBarry Smith 2761d382aafbSBarry Smith .seealso: VecSetValues(), MatSetValues(), VecSetValue(), VecSetValuesBlocked(), 2762d382aafbSBarry Smith VecSetValuesLocal(), VecSetValuesBlockedLocal(), MatSetValuesBlocked(), 2763d382aafbSBarry Smith MatSetValuesBlockedLocal(), MatSetValuesLocal(), VecScatterBegin(), VecScatterEnd() 2764d382aafbSBarry Smith E*/ 27656fbadbe2SMatthew G Knepley typedef enum {NOT_SET_VALUES, INSERT_VALUES, ADD_VALUES, MAX_VALUES, INSERT_ALL_VALUES, ADD_ALL_VALUES, INSERT_BC_VALUES, ADD_BC_VALUES} InsertMode; 2766d382aafbSBarry Smith 2767d382aafbSBarry Smith /*MC 2768d382aafbSBarry Smith INSERT_VALUES - Put a value into a vector or matrix, overwrites any previous value 2769d382aafbSBarry Smith 2770d382aafbSBarry Smith Level: beginner 2771d382aafbSBarry Smith 2772d382aafbSBarry Smith .seealso: InsertMode, VecSetValues(), MatSetValues(), VecSetValue(), VecSetValuesBlocked(), 2773eca87e8dSBarry Smith VecSetValuesLocal(), VecSetValuesBlockedLocal(), MatSetValuesBlocked(), ADD_VALUES, 2774eca87e8dSBarry Smith MatSetValuesBlockedLocal(), MatSetValuesLocal(), VecScatterBegin(), VecScatterEnd(), MAX_VALUES 2775d382aafbSBarry Smith 2776d382aafbSBarry Smith M*/ 2777d382aafbSBarry Smith 2778d382aafbSBarry Smith /*MC 2779d382aafbSBarry Smith ADD_VALUES - Adds a value into a vector or matrix, if there previously was no value, just puts the 2780d382aafbSBarry Smith value into that location 2781d382aafbSBarry Smith 2782d382aafbSBarry Smith Level: beginner 2783d382aafbSBarry Smith 2784d382aafbSBarry Smith .seealso: InsertMode, VecSetValues(), MatSetValues(), VecSetValue(), VecSetValuesBlocked(), 2785eca87e8dSBarry Smith VecSetValuesLocal(), VecSetValuesBlockedLocal(), MatSetValuesBlocked(), INSERT_VALUES, 2786eca87e8dSBarry Smith MatSetValuesBlockedLocal(), MatSetValuesLocal(), VecScatterBegin(), VecScatterEnd(), MAX_VALUES 2787d382aafbSBarry Smith 2788d382aafbSBarry Smith M*/ 2789d382aafbSBarry Smith 2790d382aafbSBarry Smith /*MC 2791d382aafbSBarry Smith MAX_VALUES - Puts the maximum of the scattered/gathered value and the current value into each location 2792d382aafbSBarry Smith 2793d382aafbSBarry Smith Level: beginner 2794d382aafbSBarry Smith 2795d382aafbSBarry Smith .seealso: InsertMode, VecScatterBegin(), VecScatterEnd(), ADD_VALUES, INSERT_VALUES 2796d382aafbSBarry Smith 2797d382aafbSBarry Smith M*/ 2798d382aafbSBarry Smith 2799ce94432eSBarry Smith PETSC_EXTERN MPI_Comm PetscObjectComm(PetscObject); 2800ce94432eSBarry Smith 280145487dadSJed Brown typedef enum {PETSC_SUBCOMM_GENERAL=0,PETSC_SUBCOMM_CONTIGUOUS=1,PETSC_SUBCOMM_INTERLACED=2} PetscSubcommType; 280245487dadSJed Brown PETSC_EXTERN const char *const PetscSubcommTypes[]; 280345487dadSJed Brown 2804d382aafbSBarry Smith /*S 2805306c2d5bSBarry Smith PetscSubcomm - A decomposition of an MPI communicator into subcommunicators 2806306c2d5bSBarry Smith 2807e28ce29aSPatrick Sanan Notes: 2808e28ce29aSPatrick Sanan After a call to PetscSubcommSetType(), PetscSubcommSetTypeGeneral(), or PetscSubcommSetFromOptions() one may call 2809306c2d5bSBarry Smith $ PetscSubcommChild() returns the associated subcommunicator on this process 28103bf92927SBarry Smith $ PetscSubcommContiguousParent() returns a parent communitor but with all child of the same subcommunicator having contiguous rank 2811306c2d5bSBarry Smith 2812306c2d5bSBarry Smith Sample Usage: 2813306c2d5bSBarry Smith PetscSubcommCreate() 2814306c2d5bSBarry Smith PetscSubcommSetNumber() 2815306c2d5bSBarry Smith PetscSubcommSetType(PETSC_SUBCOMM_INTERLACED); 2816306c2d5bSBarry Smith ccomm = PetscSubcommChild() 2817306c2d5bSBarry Smith PetscSubcommDestroy() 2818d382aafbSBarry Smith 2819d382aafbSBarry Smith Level: advanced 2820d382aafbSBarry Smith 2821d382aafbSBarry Smith Concepts: communicator, create 2822306c2d5bSBarry Smith 2823306c2d5bSBarry Smith Notes: 2824306c2d5bSBarry Smith $ PETSC_SUBCOMM_GENERAL - similar to MPI_Comm_split() each process sets the new communicator (color) they will belong to and the order within that communicator 28253bf92927SBarry Smith $ PETSC_SUBCOMM_CONTIGUOUS - each new communicator contains a set of process with contiguous ranks in the original MPI communicator 2826306c2d5bSBarry Smith $ PETSC_SUBCOMM_INTERLACED - each new communictor contains a set of processes equally far apart in rank from the others in that new communicator 2827306c2d5bSBarry Smith 2828e28ce29aSPatrick Sanan Example: Consider a communicator with six processes split into 3 subcommunicators. 2829306c2d5bSBarry Smith $ PETSC_SUBCOMM_CONTIGUOUS - the first communicator contains rank 0,1 the second rank 2,3 and the third rank 4,5 in the original ordering of the original communicator 2830306c2d5bSBarry Smith $ PETSC_SUBCOMM_INTERLACED - the first communicator contains rank 0,3, the second 1,4 and the third 2,5 2831306c2d5bSBarry Smith 2832e28ce29aSPatrick Sanan Developer Notes: 2833e28ce29aSPatrick Sanan This is used in objects such as PCREDUNDANT to manage the subcommunicators on which the redundant computations 2834306c2d5bSBarry Smith are performed. 2835306c2d5bSBarry Smith 2836306c2d5bSBarry Smith 2837306c2d5bSBarry Smith .seealso: PetscSubcommCreate(), PetscSubcommSetNumber(), PetscSubcommSetType(), PetscSubcommView(), PetscSubcommSetFromOptions() 2838306c2d5bSBarry Smith 2839d382aafbSBarry Smith S*/ 2840d382aafbSBarry Smith typedef struct _n_PetscSubcomm* PetscSubcomm; 2841d382aafbSBarry Smith 2842d382aafbSBarry Smith struct _n_PetscSubcomm { 2843d382aafbSBarry Smith MPI_Comm parent; /* parent communicator */ 2844d382aafbSBarry Smith MPI_Comm dupparent; /* duplicate parent communicator, under which the processors of this subcomm have contiguous rank */ 2845306c2d5bSBarry Smith MPI_Comm child; /* the sub-communicator */ 284645487dadSJed Brown PetscMPIInt n; /* num of subcommunicators under the parent communicator */ 284745487dadSJed Brown PetscMPIInt color; /* color of processors belong to this communicator */ 2848708d824cSJed Brown PetscMPIInt *subsize; /* size of subcommunicator[color] */ 284945487dadSJed Brown PetscSubcommType type; 2850e5acf8a4SHong Zhang char *subcommprefix; 2851d382aafbSBarry Smith }; 2852d382aafbSBarry Smith 2853c5e4d11fSDmitry Karpeev PETSC_STATIC_INLINE MPI_Comm PetscSubcommParent(PetscSubcomm scomm) {return scomm->parent;} 2854306c2d5bSBarry Smith PETSC_STATIC_INLINE MPI_Comm PetscSubcommChild(PetscSubcomm scomm) {return scomm->child;} 285536be1a5eSBarry Smith PETSC_STATIC_INLINE MPI_Comm PetscSubcommContiguousParent(PetscSubcomm scomm) {return scomm->dupparent;} 2856014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSubcommCreate(MPI_Comm,PetscSubcomm*); 2857014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSubcommDestroy(PetscSubcomm*); 2858014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSubcommSetNumber(PetscSubcomm,PetscInt); 2859014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSubcommSetType(PetscSubcomm,PetscSubcommType); 286065d9b8f1SHong Zhang PETSC_EXTERN PetscErrorCode PetscSubcommSetTypeGeneral(PetscSubcomm,PetscMPIInt,PetscMPIInt); 2861053d1c95SHong Zhang PETSC_EXTERN PetscErrorCode PetscSubcommView(PetscSubcomm,PetscViewer); 2862f68be91cSHong Zhang PETSC_EXTERN PetscErrorCode PetscSubcommSetFromOptions(PetscSubcomm); 2863e5acf8a4SHong Zhang PETSC_EXTERN PetscErrorCode PetscSubcommSetOptionsPrefix(PetscSubcomm,const char[]); 2864d382aafbSBarry Smith 28650f453b92SJed Brown /*S 28669962606eSBarry Smith PetscHeap - A simple class for managing heaps 28679962606eSBarry Smith 28689962606eSBarry Smith Level: intermediate 28699962606eSBarry Smith 28709962606eSBarry Smith Concepts: random numbers 28719962606eSBarry Smith 28729962606eSBarry Smith .seealso: PetscHeapCreate(), PetscHeapAdd(), PetscHeapPop(), PetscHeapPeek(), PetscHeapStash(), PetscHeapUnstash(), PetscHeapView(), PetscHeapDestroy() 28739962606eSBarry Smith S*/ 28749962606eSBarry Smith typedef struct _PetscHeap *PetscHeap; 28759962606eSBarry Smith 28769962606eSBarry Smith PETSC_EXTERN PetscErrorCode PetscHeapCreate(PetscInt,PetscHeap*); 28779962606eSBarry Smith PETSC_EXTERN PetscErrorCode PetscHeapAdd(PetscHeap,PetscInt,PetscInt); 28789962606eSBarry Smith PETSC_EXTERN PetscErrorCode PetscHeapPop(PetscHeap,PetscInt*,PetscInt*); 28799962606eSBarry Smith PETSC_EXTERN PetscErrorCode PetscHeapPeek(PetscHeap,PetscInt*,PetscInt*); 28809962606eSBarry Smith PETSC_EXTERN PetscErrorCode PetscHeapStash(PetscHeap,PetscInt,PetscInt); 28819962606eSBarry Smith PETSC_EXTERN PetscErrorCode PetscHeapUnstash(PetscHeap); 28829962606eSBarry Smith PETSC_EXTERN PetscErrorCode PetscHeapDestroy(PetscHeap*); 28839962606eSBarry Smith PETSC_EXTERN PetscErrorCode PetscHeapView(PetscHeap,PetscViewer); 28849962606eSBarry Smith 2885*5e71baefSBarry Smith PETSC_EXTERN PetscErrorCode PetscProcessPlacementView(PetscViewer); 2886*5e71baefSBarry Smith 28879962606eSBarry Smith /*S 28880f453b92SJed Brown PetscSegBuffer - a segmented extendable buffer 28890f453b92SJed Brown 28900f453b92SJed Brown Level: developer 28910f453b92SJed Brown 28920f453b92SJed Brown .seealso: PetscSegBufferCreate(), PetscSegBufferGet(), PetscSegBufferExtract(), PetscSegBufferDestroy() 28930f453b92SJed Brown S*/ 28940f453b92SJed Brown typedef struct _n_PetscSegBuffer *PetscSegBuffer; 289513e3f751SJed Brown PETSC_EXTERN PetscErrorCode PetscSegBufferCreate(size_t,size_t,PetscSegBuffer*); 28960f453b92SJed Brown PETSC_EXTERN PetscErrorCode PetscSegBufferDestroy(PetscSegBuffer*); 289713e3f751SJed Brown PETSC_EXTERN PetscErrorCode PetscSegBufferGet(PetscSegBuffer,size_t,void*); 2898137cf7b6SJed Brown PETSC_EXTERN PetscErrorCode PetscSegBufferExtractAlloc(PetscSegBuffer,void*); 2899137cf7b6SJed Brown PETSC_EXTERN PetscErrorCode PetscSegBufferExtractTo(PetscSegBuffer,void*); 2900137cf7b6SJed Brown PETSC_EXTERN PetscErrorCode PetscSegBufferExtractInPlace(PetscSegBuffer,void*); 290113e3f751SJed Brown PETSC_EXTERN PetscErrorCode PetscSegBufferGetSize(PetscSegBuffer,size_t*); 290213e3f751SJed Brown PETSC_EXTERN PetscErrorCode PetscSegBufferUnuse(PetscSegBuffer,size_t); 29030f453b92SJed Brown 2904*5e71baefSBarry Smith 2905471ecdacSJed Brown /* Type-safe wrapper to encourage use of PETSC_RESTRICT. Does not use PetscFunctionBegin because the error handling 2906471ecdacSJed Brown * prevents the compiler from completely erasing the stub. This is called in inner loops so it has to be as fast as 2907471ecdacSJed Brown * possible. */ 290835005c2bSLisandro Dalcin PETSC_STATIC_INLINE PetscErrorCode PetscSegBufferGetInts(PetscSegBuffer seg,PetscInt count,PetscInt *PETSC_RESTRICT *slot) {return PetscSegBufferGet(seg,(size_t)count,(void**)slot);} 2909d382aafbSBarry Smith 29109de0f6ecSBarry Smith typedef struct _n_PetscOptionsHelpPrinted *PetscOptionsHelpPrinted; 29119de0f6ecSBarry Smith extern PetscOptionsHelpPrinted PetscOptionsHelpPrintedSingleton; 29129de0f6ecSBarry Smith PETSC_EXTERN PetscErrorCode PetscOptionsHelpPrintedDestroy(PetscOptionsHelpPrinted*); 29139de0f6ecSBarry Smith PETSC_EXTERN PetscErrorCode PetscOptionsHelpPrintedCreate(PetscOptionsHelpPrinted*); 29149de0f6ecSBarry Smith PETSC_EXTERN PetscErrorCode PetscOptionsHelpPrintedCheck(PetscOptionsHelpPrinted,const char*,const char*,PetscBool*); 29159de0f6ecSBarry Smith 2916268b0dfdSSatish Balay PETSC_EXTERN PetscSegBuffer PetscCitationsList; 2917fbfcfee5SBarry Smith 29181f817a21SBarry Smith /*@C 29191f817a21SBarry Smith PetscCitationsRegister - Register a bibtex item to obtain credit for an implemented algorithm used in the code. 29201f817a21SBarry Smith 29211f817a21SBarry Smith Not Collective - only what is registered on rank 0 of PETSC_COMM_WORLD will be printed 29221f817a21SBarry Smith 29231f817a21SBarry Smith Input Parameters: 29241f817a21SBarry Smith + cite - the bibtex item, formated to displayed on multiple lines nicely 29251f817a21SBarry Smith - set - a boolean variable initially set to PETSC_FALSE; this is used to insure only a single registration of the citation 29261f817a21SBarry Smith 2927850545d0SSatish Balay Level: intermediate 2928850545d0SSatish Balay 29291f817a21SBarry Smith Options Database: 2930063414e0SPatrick Sanan . -citations [filename] - print out the bibtex entries for the given computation 29311f817a21SBarry Smith @*/ 2932dff31646SBarry Smith PETSC_STATIC_INLINE PetscErrorCode PetscCitationsRegister(const char cit[],PetscBool *set) 2933dff31646SBarry Smith { 2934dff31646SBarry Smith size_t len; 2935dff31646SBarry Smith char *vstring; 2936dff31646SBarry Smith PetscErrorCode ierr; 2937dff31646SBarry Smith 29381f817a21SBarry Smith PetscFunctionBegin; 29398d3683fcSBarry Smith if (set && *set) PetscFunctionReturn(0); 2940dff31646SBarry Smith ierr = PetscStrlen(cit,&len);CHKERRQ(ierr); 294135005c2bSLisandro Dalcin ierr = PetscSegBufferGet(PetscCitationsList,len,&vstring);CHKERRQ(ierr); 2942dff31646SBarry Smith ierr = PetscMemcpy(vstring,cit,len);CHKERRQ(ierr); 2943dff31646SBarry Smith if (set) *set = PETSC_TRUE; 29441f817a21SBarry Smith PetscFunctionReturn(0); 2945dff31646SBarry Smith } 2946dff31646SBarry Smith 2947b967cddfSBarry Smith PETSC_EXTERN PetscErrorCode PetscURLShorten(const char[],char[],size_t); 2948fe278a28SBarry Smith PETSC_EXTERN PetscErrorCode PetscGoogleDriveAuthorize(MPI_Comm,char[],char[],size_t); 2949fe278a28SBarry Smith PETSC_EXTERN PetscErrorCode PetscGoogleDriveRefresh(MPI_Comm,const char[],char[],size_t); 2950f044a08eSBarry Smith PETSC_EXTERN PetscErrorCode PetscGoogleDriveUpload(MPI_Comm,const char[],const char []); 2951fe278a28SBarry Smith 2952f044a08eSBarry Smith PETSC_EXTERN PetscErrorCode PetscBoxAuthorize(MPI_Comm,char[],char[],size_t); 2953f044a08eSBarry Smith PETSC_EXTERN PetscErrorCode PetscBoxRefresh(MPI_Comm,const char[],char[],char[],size_t); 2954b967cddfSBarry Smith 295504102261SBarry Smith PETSC_EXTERN PetscErrorCode PetscTextBelt(MPI_Comm,const char[],const char[],PetscBool*); 2956763ec7b1SBarry Smith PETSC_EXTERN PetscErrorCode PetscTellMyCell(MPI_Comm,const char[],const char[],PetscBool*); 2957dff31646SBarry Smith 295868e69593SBarry Smith PETSC_EXTERN PetscErrorCode PetscPullJSONValue(const char[],const char[],char[],size_t,PetscBool*); 29595dc0f0a4SBarry Smith PETSC_EXTERN PetscErrorCode PetscPushJSONValue(char[],const char[],const char[],size_t); 2960d382aafbSBarry Smith 2961b2566f29SBarry Smith 2962b2566f29SBarry Smith #if defined(PETSC_USE_DEBUG) 2963b2566f29SBarry Smith /* 2964b2566f29SBarry Smith Verify that all processes in the communicator have called this from the same line of code 2965b2566f29SBarry Smith */ 29668f5db7efSBarry Smith PETSC_EXTERN PetscErrorCode PetscAllreduceBarrierCheck(MPI_Comm,PetscMPIInt,int,const char*,const char *); 296777a5e07dSBarry Smith 296877a5e07dSBarry Smith /*MC 296977a5e07dSBarry Smith MPIU_Allreduce - a PETSc replacement for MPI_Allreduce() that tries to determine if the call from all the MPI processes occur from the 297077a5e07dSBarry Smith same place in the PETSc code. This helps to detect bugs where different MPI processes follow different code paths 297177a5e07dSBarry Smith resulting in inconsistent and incorrect calls to MPI_Allreduce(). 297277a5e07dSBarry Smith 297377a5e07dSBarry Smith Collective on MPI_Comm 297477a5e07dSBarry Smith 297577a5e07dSBarry Smith Synopsis: 297677a5e07dSBarry Smith #include <petscsys.h> 297777a5e07dSBarry Smith PetscErrorCode MPIU_Allreduce(void *indata,void *outdata,PetscMPIInt count,MPI_Datatype datatype, MPI_Op op, MPI_Comm comm); 297877a5e07dSBarry Smith 297977a5e07dSBarry Smith Input Parameters: 298077a5e07dSBarry Smith + indata - pointer to the input data to be reduced 298177a5e07dSBarry Smith . count - the number of MPI data items in indata and outdata 298277a5e07dSBarry Smith . datatype - the MPI datatype, for example MPI_INT 298377a5e07dSBarry Smith . op - the MPI operation, for example MPI_SUM 298477a5e07dSBarry Smith - comm - the MPI communicator on which the operation occurs 298577a5e07dSBarry Smith 298677a5e07dSBarry Smith Output Parameter: 298777a5e07dSBarry Smith . outdata - the reduced values 298877a5e07dSBarry Smith 2989e28ce29aSPatrick Sanan Notes: 2990e28ce29aSPatrick Sanan In optimized mode this directly calls MPI_Allreduce() 299177a5e07dSBarry Smith 299277a5e07dSBarry Smith Level: developer 299377a5e07dSBarry Smith 299477a5e07dSBarry Smith .seealso: MPI_Allreduce() 299577a5e07dSBarry Smith M*/ 2996fbfcfee5SBarry Smith #define MPIU_Allreduce(a,b,c,d,e,fcomm) (PetscAllreduceBarrierCheck(fcomm,c,__LINE__,PETSC_FUNCTION_NAME,__FILE__) || MPI_Allreduce(a,b,c,d,e,fcomm)) 2997b2566f29SBarry Smith #else 2998b2566f29SBarry Smith #define MPIU_Allreduce(a,b,c,d,e,fcomm) MPI_Allreduce(a,b,c,d,e,fcomm) 2999b2566f29SBarry Smith #endif 3000b2566f29SBarry Smith 3001d382aafbSBarry Smith #endif 3002