1d382aafbSBarry Smith /* 2d382aafbSBarry Smith This is the main PETSc include file (for C and C++). It is included by all 3d382aafbSBarry Smith other PETSc include files, so it almost never has to be specifically included. 4d382aafbSBarry Smith */ 56c7e564aSBarry Smith #if !defined(__PETSCSYS_H) 66c7e564aSBarry Smith #define __PETSCSYS_H 7d382aafbSBarry Smith /* ========================================================================== */ 8d382aafbSBarry Smith /* 9d382aafbSBarry Smith petscconf.h is contained in ${PETSC_ARCH}/include/petscconf.h it is 10d382aafbSBarry Smith found automatically by the compiler due to the -I${PETSC_DIR}/${PETSC_ARCH}/include 11d382aafbSBarry Smith in the conf/variables definition of PETSC_INCLUDE 12d382aafbSBarry Smith */ 13d382aafbSBarry Smith #include "petscconf.h" 14d382aafbSBarry Smith #include "petscfix.h" 15d382aafbSBarry Smith 16*73fca5a0SBarry Smith #if defined(PETSC_DESIRE_FEATURE_TEST_MACROS) 17*73fca5a0SBarry Smith /* 18*73fca5a0SBarry Smith Feature test macros must be included before headers defined by IEEE Std 1003.1-2001 19*73fca5a0SBarry Smith We only turn these in PETSc source files that require them by setting PETSC_DESIRE_FEATURE_TEST_MACROS 20*73fca5a0SBarry Smith */ 21*73fca5a0SBarry Smith #if defined(PETSC__POSIX_C_SOURCE_200112L) 22*73fca5a0SBarry Smith #define _POSIX_C_SOURCE 200112L 23*73fca5a0SBarry Smith #endif 24*73fca5a0SBarry Smith #if defined(PETSC__BSD_SOURCE) 25*73fca5a0SBarry Smith #define _BSD_SOURCE 26*73fca5a0SBarry Smith #endif 27*73fca5a0SBarry Smith #endif 28*73fca5a0SBarry Smith 29d382aafbSBarry Smith /* ========================================================================== */ 30d382aafbSBarry Smith /* 31d382aafbSBarry Smith This facilitates using C version of PETSc from C++ and 32e2e64c6bSBarry Smith C++ version from C. Use --with-c-support --with-clanguage=c++ with ./configure for the latter) 33d382aafbSBarry Smith */ 34d382aafbSBarry Smith #if defined(PETSC_CLANGUAGE_CXX) && !defined(PETSC_USE_EXTERN_CXX) && !defined(__cplusplus) 35d382aafbSBarry Smith #error "PETSc configured with --with-clanguage=c++ and NOT --with-c-support - it can be used only with a C++ compiler" 36d382aafbSBarry Smith #endif 371ec50b02SJed Brown 381ec50b02SJed Brown #if defined(__cplusplus) 391ec50b02SJed Brown # define PETSC_FUNCTION_NAME PETSC_FUNCTION_NAME_CXX 401ec50b02SJed Brown #else 411ec50b02SJed Brown # define PETSC_FUNCTION_NAME PETSC_FUNCTION_NAME_C 421ec50b02SJed Brown #endif 43d382aafbSBarry Smith 44d382aafbSBarry Smith #if defined(PETSC_USE_EXTERN_CXX) && defined(__cplusplus) 45d382aafbSBarry Smith #define PETSC_EXTERN_CXX_BEGIN extern "C" { 46d382aafbSBarry Smith #define PETSC_EXTERN_CXX_END } 47d382aafbSBarry Smith #else 48d382aafbSBarry Smith #define PETSC_EXTERN_CXX_BEGIN 49d382aafbSBarry Smith #define PETSC_EXTERN_CXX_END 50d382aafbSBarry Smith #endif 51d382aafbSBarry Smith /* ========================================================================== */ 52d382aafbSBarry Smith /* 53d382aafbSBarry Smith Current PETSc version number and release date. Also listed in 54d382aafbSBarry Smith Web page 55d382aafbSBarry Smith src/docs/tex/manual/intro.tex, 56d382aafbSBarry Smith src/docs/tex/manual/manual.tex. 57d382aafbSBarry Smith src/docs/website/index.html. 58d382aafbSBarry Smith */ 59d382aafbSBarry Smith #include "petscversion.h" 60301d30feSBarry Smith #define PETSC_AUTHOR_INFO " The PETSc Team\n petsc-maint@mcs.anl.gov\n http://www.mcs.anl.gov/petsc/\n" 61d382aafbSBarry Smith #if (PETSC_VERSION_RELEASE == 1) 62301d30feSBarry Smith #define PetscGetVersion(version,len) PetscSNPrintf(version,len,"Petsc Release Version %d.%d.%d, Patch %d, %s ", \ 63d382aafbSBarry Smith PETSC_VERSION_MAJOR,PETSC_VERSION_MINOR, PETSC_VERSION_SUBMINOR, \ 64301d30feSBarry Smith PETSC_VERSION_PATCH,PETSC_VERSION_PATCH_DATE) 65d382aafbSBarry Smith #else 66301d30feSBarry Smith #define PetscGetVersion(version,len) PetscSNPrintf(version,len,"Petsc Development HG revision: %s HG Date: %s", \ 67301d30feSBarry Smith PETSC_VERSION_HG, PETSC_VERSION_DATE_HG) 68d382aafbSBarry Smith #endif 69d382aafbSBarry Smith 70d382aafbSBarry Smith /*MC 71d382aafbSBarry Smith PetscGetVersion - Gets the PETSc version information in a string. 72d382aafbSBarry Smith 73d382aafbSBarry Smith Input Parameter: 74d382aafbSBarry Smith . len - length of the string 75d382aafbSBarry Smith 76d382aafbSBarry Smith Output Parameter: 77d382aafbSBarry Smith . version - version string 78d382aafbSBarry Smith 79d382aafbSBarry Smith Level: developer 80d382aafbSBarry Smith 81d382aafbSBarry Smith Usage: 82d382aafbSBarry Smith char version[256]; 83d382aafbSBarry Smith ierr = PetscGetVersion(version,256);CHKERRQ(ierr) 84d382aafbSBarry Smith 85d382aafbSBarry Smith Fortran Note: 86d382aafbSBarry Smith This routine is not supported in Fortran. 87d382aafbSBarry Smith 88d382aafbSBarry Smith .seealso: PetscGetProgramName() 89d382aafbSBarry Smith 90d382aafbSBarry Smith M*/ 91d382aafbSBarry Smith 92d382aafbSBarry Smith /* ========================================================================== */ 93d382aafbSBarry Smith 94d382aafbSBarry Smith /* 95d382aafbSBarry Smith Defines the interface to MPI allowing the use of all MPI functions. 96d382aafbSBarry Smith 97d382aafbSBarry Smith PETSc does not use the C++ binding of MPI at ALL. The following flag 98d382aafbSBarry Smith makes sure the C++ bindings are not included. The C++ bindings REQUIRE 99d382aafbSBarry Smith putting mpi.h before ANY C++ include files, we cannot control this 100d382aafbSBarry Smith with all PETSc users. Users who want to use the MPI C++ bindings can include 101d382aafbSBarry Smith mpicxx.h directly in their code 102d382aafbSBarry Smith */ 103d382aafbSBarry Smith #define MPICH_SKIP_MPICXX 1 104d382aafbSBarry Smith #define OMPI_SKIP_MPICXX 1 105d382aafbSBarry Smith #include "mpi.h" 10665013866SBarry Smith 107d382aafbSBarry Smith /* 108d382aafbSBarry Smith Yuck, we need to put stdio.h AFTER mpi.h for MPICH2 with C++ compiler 109d382aafbSBarry Smith see the top of mpicxx.h in the MPICH2 distribution. 110d382aafbSBarry Smith 111d382aafbSBarry Smith The MPI STANDARD HAS TO BE CHANGED to prevent this nonsense. 112d382aafbSBarry Smith */ 113d382aafbSBarry Smith #include <stdio.h> 114d382aafbSBarry Smith 115d382aafbSBarry Smith /* MSMPI on 32bit windows requires this yukky hack - that breaks MPI standard compliance */ 116d382aafbSBarry Smith #if !defined(MPIAPI) 117d382aafbSBarry Smith #define MPIAPI 118d382aafbSBarry Smith #endif 119d382aafbSBarry Smith 120b3506946SBarry Smith 121d382aafbSBarry Smith /*MC 122d382aafbSBarry Smith PetscErrorCode - datatype used for return error code from all PETSc functions 123d382aafbSBarry Smith 124d382aafbSBarry Smith Level: beginner 125d382aafbSBarry Smith 126d382aafbSBarry Smith .seealso: CHKERRQ, SETERRQ 127d382aafbSBarry Smith M*/ 128d382aafbSBarry Smith typedef int PetscErrorCode; 129d382aafbSBarry Smith 130d382aafbSBarry Smith /*MC 131d382aafbSBarry Smith 132503cfb0cSBarry Smith PetscClassId - A unique id used to identify each PETSc class. 133d382aafbSBarry Smith (internal integer in the data structure used for error 134d382aafbSBarry Smith checking). These are all defined by an offset from the lowest 1350700a824SBarry Smith one, PETSC_SMALLEST_CLASSID. 136d382aafbSBarry Smith 137d382aafbSBarry Smith Level: advanced 138d382aafbSBarry Smith 1390700a824SBarry Smith .seealso: PetscClassIdRegister(), PetscLogEventRegister(), PetscHeaderCreate() 140d382aafbSBarry Smith M*/ 1410700a824SBarry Smith typedef int PetscClassId; 142d382aafbSBarry Smith 143d382aafbSBarry Smith 144d382aafbSBarry Smith /*MC 145d382aafbSBarry Smith PetscBLASInt - datatype used to represent 'int' parameters to BLAS/LAPACK functions. 146d382aafbSBarry Smith 147d382aafbSBarry Smith Level: intermediate 148d382aafbSBarry Smith 149d382aafbSBarry Smith Notes: usually this is the same as PetscInt, but if PETSc was built with --with-64-bit-indices but 1503b2a8c54SBarry Smith standard C/Fortran integers are 32 bit then this is NOT the same as PetscInt it remains 32 bit 151287e6e24SBarry Smith (except on very rare BLAS/LAPACK implementations that support 64 bit integers see the note below). 1523b2a8c54SBarry Smith 1533b2a8c54SBarry Smith PetscBLASIntCheck(a) checks if the given PetscInt a will fit in a PetscBLASInt, if not it generates a 1543b2a8c54SBarry Smith PETSC_ERR_ARG_OUTOFRANGE. 1553b2a8c54SBarry Smith 1563b2a8c54SBarry Smith PetscBLASInt b = PetscBLASIntCast(a) checks if the given PetscInt a will fit in a PetscBLASInt, if not it 1573b2a8c54SBarry Smith generates a PETSC_ERR_ARG_OUTOFRANGE 158d382aafbSBarry Smith 159287e6e24SBarry Smith Developer Notes: The 64bit versions of MATLAB ship with BLAS and LAPACK that use 64 bit integers for sizes etc, 160287e6e24SBarry Smith if you run ./configure with the option 161287e6e24SBarry Smith --with-blas-lapack-lib=[/Applications/MATLAB_R2010b.app/bin/maci64/libmwblas.dylib,/Applications/MATLAB_R2010b.app/bin/maci64/libmwlapack.dylib] 162287e6e24SBarry Smith for example, you can change the int below to long int. Since MATLAB uses the MKL (Intel Math Libraries) it is likely one can 163287e6e24SBarry Smith purchase a 64 bit integer version of the MKL and use that with a PetscBLASInt of long int. 164287e6e24SBarry Smith 165287e6e24SBarry Smith External packages such as hypre, ML, SuperLU etc do not provide any support for passing 64 bit integers to BLAS/LAPACK so cannot 166287e6e24SBarry Smith be used with PETSc if you have set PetscBLASInt to long int. 167287e6e24SBarry Smith 168d382aafbSBarry Smith .seealso: PetscMPIInt, PetscInt 169d382aafbSBarry Smith 170d382aafbSBarry Smith M*/ 171d382aafbSBarry Smith typedef int PetscBLASInt; 172d382aafbSBarry Smith 173d382aafbSBarry Smith /*MC 174d382aafbSBarry Smith PetscMPIInt - datatype used to represent 'int' parameters to MPI functions. 175d382aafbSBarry Smith 176d382aafbSBarry Smith Level: intermediate 177d382aafbSBarry Smith 178d382aafbSBarry Smith Notes: usually this is the same as PetscInt, but if PETSc was built with --with-64-bit-indices but 1793b2a8c54SBarry Smith standard C/Fortran integers are 32 bit then this is NOT the same as PetscInt it remains 32 bit 180d382aafbSBarry Smith 1813b2a8c54SBarry Smith PetscMPIIntCheck(a) checks if the given PetscInt a will fit in a PetscMPIInt, if not it generates a 182d382aafbSBarry Smith PETSC_ERR_ARG_OUTOFRANGE. 183d382aafbSBarry Smith 1843b2a8c54SBarry Smith PetscMPIInt b = PetscMPIIntCast(a) checks if the given PetscInt a will fit in a PetscMPIInt, if not it 185d382aafbSBarry Smith generates a PETSC_ERR_ARG_OUTOFRANGE 186d382aafbSBarry Smith 187d382aafbSBarry Smith .seealso: PetscBLASInt, PetscInt 188d382aafbSBarry Smith 189d382aafbSBarry Smith M*/ 190d382aafbSBarry Smith typedef int PetscMPIInt; 191d382aafbSBarry Smith 192d382aafbSBarry Smith /*MC 193d382aafbSBarry Smith PetscEnum - datatype used to pass enum types within PETSc functions. 194d382aafbSBarry Smith 195d382aafbSBarry Smith Level: intermediate 196d382aafbSBarry Smith 197d382aafbSBarry Smith PetscMPIIntCheck(a) checks if the given PetscInt a will fit in a PetscMPIInt, if not it generates a 198d382aafbSBarry Smith PETSC_ERR_ARG_OUTOFRANGE. 199d382aafbSBarry Smith 200d382aafbSBarry Smith PetscMPIInt b = PetscMPIIntCast(a) checks if the given PetscInt a will fit in a PetscMPIInt, if not it 201d382aafbSBarry Smith generates a PETSC_ERR_ARG_OUTOFRANGE 202d382aafbSBarry Smith 203d382aafbSBarry Smith .seealso: PetscOptionsGetEnum(), PetscOptionsEnum(), PetscBagRegisterEnum() 204d382aafbSBarry Smith M*/ 205d382aafbSBarry Smith typedef enum { ENUM_DUMMY } PetscEnum; 206d382aafbSBarry Smith 207d382aafbSBarry Smith /*MC 208d382aafbSBarry Smith PetscInt - PETSc type that represents integer - used primarily to 2093b2a8c54SBarry Smith represent size of arrays and indexing into arrays. Its size can be configured with the option 210d382aafbSBarry Smith --with-64-bit-indices - to be either 32bit or 64bit [default 32 bit ints] 211d382aafbSBarry Smith 212d382aafbSBarry Smith Level: intermediate 213d382aafbSBarry Smith 214d382aafbSBarry Smith .seealso: PetscScalar, PetscBLASInt, PetscMPIInt 215d382aafbSBarry Smith M*/ 216d382aafbSBarry Smith #if defined(PETSC_USE_64BIT_INDICES) 217d382aafbSBarry Smith typedef long long PetscInt; 218d382aafbSBarry Smith #define MPIU_INT MPI_LONG_LONG_INT 219d382aafbSBarry Smith #else 220d382aafbSBarry Smith typedef int PetscInt; 221d382aafbSBarry Smith #define MPIU_INT MPI_INT 222d382aafbSBarry Smith #endif 223d382aafbSBarry Smith 22458b60935SBarry Smith /*EC 22558b60935SBarry Smith 22658b60935SBarry Smith PetscPrecision - indicates what precision the object is using 22758b60935SBarry Smith 22858b60935SBarry Smith Level: advanced 22958b60935SBarry Smith 23058b60935SBarry Smith .seealso: PetscObjectSetPrecision() 23158b60935SBarry Smith E*/ 23258b60935SBarry Smith typedef enum { PETSC_PRECISION_SINGLE=4,PETSC_PRECISION_DOUBLE=8 } PetscPrecision; 23358b60935SBarry Smith extern const char *PetscPrecisions[]; 23458b60935SBarry Smith 23558b60935SBarry Smith 236503cfb0cSBarry Smith /* 237503cfb0cSBarry Smith For the rare cases when one needs to send a size_t object with MPI 238503cfb0cSBarry Smith */ 239d382aafbSBarry Smith #if (PETSC_SIZEOF_SIZE_T) == (PETSC_SIZEOF_INT) 240d382aafbSBarry Smith #define MPIU_SIZE_T MPI_INT 241d382aafbSBarry Smith #elif (PETSC_SIZEOF_SIZE_T) == (PETSC_SIZEOF_LONG) 242d382aafbSBarry Smith #define MPIU_SIZE_T MPI_LONG 243d382aafbSBarry Smith #elif (PETSC_SIZEOF_SIZE_T) == (PETSC_SIZEOF_LONG_LONG) 244d382aafbSBarry Smith #define MPIU_SIZE_T MPI_LONG_LONG_INT 245d382aafbSBarry Smith #else 246d382aafbSBarry Smith #error "Unknown size for size_t! Send us a bugreport at petsc-maint@mcs.anl.gov" 247d382aafbSBarry Smith #endif 248d382aafbSBarry Smith 249d382aafbSBarry Smith 250d382aafbSBarry Smith /* 251d382aafbSBarry Smith You can use PETSC_STDOUT as a replacement of stdout. You can also change 252d382aafbSBarry Smith the value of PETSC_STDOUT to redirect all standard output elsewhere 253d382aafbSBarry Smith */ 254d382aafbSBarry Smith 255d382aafbSBarry Smith extern FILE* PETSC_STDOUT; 256d382aafbSBarry Smith 257d382aafbSBarry Smith /* 258d382aafbSBarry Smith You can use PETSC_STDERR as a replacement of stderr. You can also change 259d382aafbSBarry Smith the value of PETSC_STDERR to redirect all standard error elsewhere 260d382aafbSBarry Smith */ 261d382aafbSBarry Smith extern FILE* PETSC_STDERR; 262d382aafbSBarry Smith 263d382aafbSBarry Smith /* 264d382aafbSBarry Smith PETSC_ZOPEFD is used to send data to the PETSc webpage. It can be used 265d382aafbSBarry Smith in conjunction with PETSC_STDOUT, or by itself. 266d382aafbSBarry Smith */ 267d382aafbSBarry Smith extern FILE* PETSC_ZOPEFD; 268d382aafbSBarry Smith 269d382aafbSBarry Smith #if !defined(PETSC_USE_EXTERN_CXX) && defined(__cplusplus) 270d382aafbSBarry Smith /*MC 271d382aafbSBarry Smith PetscPolymorphicSubroutine - allows defining a C++ polymorphic version of 272d382aafbSBarry Smith a PETSc function that remove certain optional arguments for a simplier user interface 273d382aafbSBarry Smith 274d382aafbSBarry Smith Synopsis: 275d382aafbSBarry Smith PetscPolymorphicSubroutine(Functionname,(arguments of C++ function),(arguments of C function)) 276d382aafbSBarry Smith 277eca87e8dSBarry Smith Not collective 278eca87e8dSBarry Smith 279d382aafbSBarry Smith Level: developer 280d382aafbSBarry Smith 281d382aafbSBarry Smith Example: 282d382aafbSBarry Smith PetscPolymorphicSubroutine(VecNorm,(Vec x,PetscReal *r),(x,NORM_2,r)) generates the new routine 283d382aafbSBarry Smith PetscErrorCode VecNorm(Vec x,PetscReal *r) = VecNorm(x,NORM_2,r) 284d382aafbSBarry Smith 285d382aafbSBarry Smith .seealso: PetscPolymorphicFunction() 286d382aafbSBarry Smith 287d382aafbSBarry Smith M*/ 288d382aafbSBarry Smith #define PetscPolymorphicSubroutine(A,B,C) PETSC_STATIC_INLINE PetscErrorCode A B {return A C;} 289d382aafbSBarry Smith 290d382aafbSBarry Smith /*MC 291d382aafbSBarry Smith PetscPolymorphicScalar - allows defining a C++ polymorphic version of 292d382aafbSBarry Smith a PETSc function that replaces a PetscScalar * argument with a PetscScalar argument 293d382aafbSBarry Smith 294d382aafbSBarry Smith Synopsis: 295d382aafbSBarry Smith PetscPolymorphicScalar(Functionname,(arguments of C++ function),(arguments of C function)) 296d382aafbSBarry Smith 297eca87e8dSBarry Smith Not collective 298eca87e8dSBarry Smith 299d382aafbSBarry Smith Level: developer 300d382aafbSBarry Smith 301d382aafbSBarry Smith Example: 302d382aafbSBarry Smith PetscPolymorphicScalar(VecAXPY,(PetscScalar _val,Vec x,Vec y),(&_Val,x,y)) generates the new routine 303d382aafbSBarry Smith PetscErrorCode VecAXPY(PetscScalar _val,Vec x,Vec y) = {PetscScalar _Val = _val; return VecAXPY(&_Val,x,y);} 304d382aafbSBarry Smith 305d382aafbSBarry Smith .seealso: PetscPolymorphicFunction(),PetscPolymorphicSubroutine() 306d382aafbSBarry Smith 307d382aafbSBarry Smith M*/ 308d382aafbSBarry Smith #define PetscPolymorphicScalar(A,B,C) PETSC_STATIC_INLINE PetscErrorCode A B {PetscScalar _Val = _val; return A C;} 309d382aafbSBarry Smith 310d382aafbSBarry Smith /*MC 311d382aafbSBarry Smith PetscPolymorphicFunction - allows defining a C++ polymorphic version of 312d382aafbSBarry Smith a PETSc function that remove certain optional arguments for a simplier user interface 313d382aafbSBarry Smith and returns the computed value (istead of an error code) 314d382aafbSBarry Smith 315d382aafbSBarry Smith Synopsis: 316d382aafbSBarry Smith PetscPolymorphicFunction(Functionname,(arguments of C++ function),(arguments of C function),return type,return variable name) 317d382aafbSBarry Smith 318eca87e8dSBarry Smith Not collective 319eca87e8dSBarry Smith 320d382aafbSBarry Smith Level: developer 321d382aafbSBarry Smith 322d382aafbSBarry Smith Example: 323d382aafbSBarry Smith PetscPolymorphicFunction(VecNorm,(Vec x,NormType t),(x,t,&r),PetscReal,r) generates the new routine 324d382aafbSBarry Smith PetscReal VecNorm(Vec x,NormType t) = {PetscReal r; VecNorm(x,t,&r); return r;} 325d382aafbSBarry Smith 326d382aafbSBarry Smith .seealso: PetscPolymorphicSubroutine() 327d382aafbSBarry Smith 328d382aafbSBarry Smith M*/ 329d382aafbSBarry Smith #define PetscPolymorphicFunction(A,B,C,D,E) PETSC_STATIC_INLINE D A B {D E; A C;return E;} 330d382aafbSBarry Smith 331d382aafbSBarry Smith #else 332d382aafbSBarry Smith #define PetscPolymorphicSubroutine(A,B,C) 333d382aafbSBarry Smith #define PetscPolymorphicScalar(A,B,C) 334d382aafbSBarry Smith #define PetscPolymorphicFunction(A,B,C,D,E) 335d382aafbSBarry Smith #endif 336d382aafbSBarry Smith 337d382aafbSBarry Smith /*MC 338d382aafbSBarry Smith PetscUnlikely - hints the compiler that the given condition is usually FALSE 339d382aafbSBarry Smith 340d382aafbSBarry Smith Synopsis: 341ace3abfcSBarry Smith PetscBool PetscUnlikely(PetscBool cond) 342d382aafbSBarry Smith 343eca87e8dSBarry Smith Not Collective 344eca87e8dSBarry Smith 345d382aafbSBarry Smith Input Parameters: 346d382aafbSBarry Smith . cond - condition or expression 347d382aafbSBarry Smith 348d382aafbSBarry Smith Note: This returns the same truth value, it is only a hint to compilers that the resulting 349d382aafbSBarry Smith branch is unlikely. 350d382aafbSBarry Smith 351d382aafbSBarry Smith Level: advanced 352d382aafbSBarry Smith 353d382aafbSBarry Smith .seealso: PetscLikely(), CHKERRQ 354d382aafbSBarry Smith M*/ 355d382aafbSBarry Smith 356d382aafbSBarry Smith /*MC 357d382aafbSBarry Smith PetscLikely - hints the compiler that the given condition is usually TRUE 358d382aafbSBarry Smith 359d382aafbSBarry Smith Synopsis: 360ace3abfcSBarry Smith PetscBool PetscUnlikely(PetscBool cond) 361d382aafbSBarry Smith 362eca87e8dSBarry Smith Not Collective 363eca87e8dSBarry Smith 364d382aafbSBarry Smith Input Parameters: 365d382aafbSBarry Smith . cond - condition or expression 366d382aafbSBarry Smith 367d382aafbSBarry Smith Note: This returns the same truth value, it is only a hint to compilers that the resulting 368d382aafbSBarry Smith branch is likely. 369d382aafbSBarry Smith 370d382aafbSBarry Smith Level: advanced 371d382aafbSBarry Smith 372d382aafbSBarry Smith .seealso: PetscUnlikely() 373d382aafbSBarry Smith M*/ 374d382aafbSBarry Smith #if defined(PETSC_HAVE_BUILTIN_EXPECT) 375d382aafbSBarry Smith # define PetscUnlikely(cond) __builtin_expect(!!(cond),0) 376d382aafbSBarry Smith # define PetscLikely(cond) __builtin_expect(!!(cond),1) 377d382aafbSBarry Smith #else 378cd3f4ce9SJed Brown # define PetscUnlikely(cond) (cond) 379cd3f4ce9SJed Brown # define PetscLikely(cond) (cond) 380d382aafbSBarry Smith #endif 381d382aafbSBarry Smith 382d382aafbSBarry Smith /* 383d382aafbSBarry Smith Defines some elementary mathematics functions and constants. 384d382aafbSBarry Smith */ 385d382aafbSBarry Smith #include "petscmath.h" 386d382aafbSBarry Smith 387d382aafbSBarry Smith /* 388d382aafbSBarry Smith Declare extern C stuff after including external header files 389d382aafbSBarry Smith */ 390d382aafbSBarry Smith 391d382aafbSBarry Smith PETSC_EXTERN_CXX_BEGIN 392d382aafbSBarry Smith 393d382aafbSBarry Smith /* 394d382aafbSBarry Smith Basic PETSc constants 395d382aafbSBarry Smith */ 396d382aafbSBarry Smith 397d382aafbSBarry Smith /*E 398ace3abfcSBarry Smith PetscBool - Logical variable. Actually an int in C and a logical in Fortran. 399d382aafbSBarry Smith 400d382aafbSBarry Smith Level: beginner 401d382aafbSBarry Smith 402ace3abfcSBarry Smith Developer Note: Why have PetscBool , why not use bool in C? The problem is that K and R C, C99 and C++ all have different mechanisms for 40334e82e7dSBarry Smith boolean values. It is not easy to have a simple macro that that will work properly in all circumstances with all three mechanisms. 40434e82e7dSBarry Smith 405d382aafbSBarry Smith E*/ 406ace3abfcSBarry Smith typedef enum { PETSC_FALSE,PETSC_TRUE } PetscBool; 407ace3abfcSBarry Smith extern const char *PetscBools[]; 40870b3c8c7SBarry Smith 40970b3c8c7SBarry Smith /*E 41070b3c8c7SBarry Smith PetscCopyMode - Determines how an array passed to certain functions is copied or retained 41170b3c8c7SBarry Smith 41270b3c8c7SBarry Smith Level: beginner 41370b3c8c7SBarry Smith 41470b3c8c7SBarry Smith $ PETSC_COPY_VALUES - the array values are copied into new space, the user is free to reuse or delete the passed in array 41570b3c8c7SBarry Smith $ PETSC_OWN_POINTER - the array values are NOT copied, the object takes ownership of the array and will free it later, the user cannot change or 41670b3c8c7SBarry Smith $ delete the array. The array MUST have been obtained with PetscMalloc(). Hence this mode cannot be used in Fortran. 41770b3c8c7SBarry Smith $ PETSC_USE_POINTER - the array values are NOT copied, the object uses the array but does NOT take ownership of the array. The user cannot use 41870b3c8c7SBarry Smith the array but the user must delete the array after the object is destroyed. 41970b3c8c7SBarry Smith 42070b3c8c7SBarry Smith E*/ 42170b3c8c7SBarry Smith typedef enum { PETSC_COPY_VALUES, PETSC_OWN_POINTER, PETSC_USE_POINTER} PetscCopyMode; 42270b3c8c7SBarry Smith extern const char *PetscCopyModes[]; 423d382aafbSBarry Smith 424d382aafbSBarry Smith /*MC 425ace3abfcSBarry Smith PETSC_FALSE - False value of PetscBool 426d382aafbSBarry Smith 427d382aafbSBarry Smith Level: beginner 428d382aafbSBarry Smith 429d382aafbSBarry Smith Note: Zero integer 430d382aafbSBarry Smith 431ace3abfcSBarry Smith .seealso: PetscBool , PETSC_TRUE 432d382aafbSBarry Smith M*/ 433d382aafbSBarry Smith 434d382aafbSBarry Smith /*MC 435ace3abfcSBarry Smith PETSC_TRUE - True value of PetscBool 436d382aafbSBarry Smith 437d382aafbSBarry Smith Level: beginner 438d382aafbSBarry Smith 439d382aafbSBarry Smith Note: Nonzero integer 440d382aafbSBarry Smith 441ace3abfcSBarry Smith .seealso: PetscBool , PETSC_FALSE 442d382aafbSBarry Smith M*/ 443d382aafbSBarry Smith 444d382aafbSBarry Smith /*MC 445d382aafbSBarry Smith PETSC_NULL - standard way of passing in a null or array or pointer 446d382aafbSBarry Smith 447d382aafbSBarry Smith Level: beginner 448d382aafbSBarry Smith 449d382aafbSBarry Smith Notes: accepted by many PETSc functions to not set a parameter and instead use 450d382aafbSBarry Smith some default 451d382aafbSBarry Smith 452d382aafbSBarry Smith This macro does not exist in Fortran; you must use PETSC_NULL_INTEGER, 453503cfb0cSBarry Smith PETSC_NULL_DOUBLE_PRECISION, PETSC_NULL_FUNCTION, PETSC_NULL_OBJECT etc 454d382aafbSBarry Smith 45534e82e7dSBarry Smith Developer Note: Why have PETSC_NULL, why not just use NULL? The problem is that NULL is defined in different include files under 45634e82e7dSBarry Smith different versions of Unix. It is tricky to insure the correct include file is always included. 45734e82e7dSBarry Smith 458d382aafbSBarry Smith .seealso: PETSC_DECIDE, PETSC_DEFAULT, PETSC_IGNORE, PETSC_DETERMINE 459d382aafbSBarry Smith 460d382aafbSBarry Smith M*/ 461d382aafbSBarry Smith #define PETSC_NULL 0 462d382aafbSBarry Smith 463d382aafbSBarry Smith /*MC 464d382aafbSBarry Smith PETSC_IGNORE - same as PETSC_NULL, means PETSc will ignore this argument 465d382aafbSBarry Smith 466d382aafbSBarry Smith Level: beginner 467d382aafbSBarry Smith 468d382aafbSBarry Smith Note: accepted by many PETSc functions to not set a parameter and instead use 469d382aafbSBarry Smith some default 470d382aafbSBarry Smith 471d382aafbSBarry Smith Fortran Notes: This macro does not exist in Fortran; you must use PETSC_NULL_INTEGER, 472d382aafbSBarry Smith PETSC_NULL_DOUBLE_PRECISION etc 473d382aafbSBarry Smith 474d382aafbSBarry Smith .seealso: PETSC_DECIDE, PETSC_DEFAULT, PETSC_NULL, PETSC_DETERMINE 475d382aafbSBarry Smith 476d382aafbSBarry Smith M*/ 477d382aafbSBarry Smith #define PETSC_IGNORE PETSC_NULL 478d382aafbSBarry Smith 479d382aafbSBarry Smith /*MC 480557d4da8SBarry Smith PETSC_DECIDE - standard way of passing in integer or floating point parameter 481557d4da8SBarry Smith where you wish PETSc to use the default. 482557d4da8SBarry Smith 483557d4da8SBarry Smith Level: beginner 484557d4da8SBarry Smith 485557d4da8SBarry Smith .seealso: PETSC_NULL, PETSC_DEFAULT, PETSC_IGNORE, PETSC_DETERMINE 486557d4da8SBarry Smith 487557d4da8SBarry Smith M*/ 488557d4da8SBarry Smith #define PETSC_DECIDE -1 489557d4da8SBarry Smith 490557d4da8SBarry Smith /*MC 491d382aafbSBarry Smith PETSC_DETERMINE - standard way of passing in integer or floating point parameter 492d382aafbSBarry Smith where you wish PETSc to compute the required value. 493d382aafbSBarry Smith 494d382aafbSBarry Smith Level: beginner 495d382aafbSBarry Smith 496557d4da8SBarry Smith 497557d4da8SBarry Smith Developer Note: I would like to use const PetscInt PETSC_DETERMINE = PETSC_DECIDE; but for 498557d4da8SBarry Smith some reason this is not allowed by the standard even though PETSC_DECIDE is a constant value. 499557d4da8SBarry Smith 500d382aafbSBarry Smith .seealso: PETSC_DECIDE, PETSC_DEFAULT, PETSC_IGNORE, PETSC_NULL, VecSetSizes() 501d382aafbSBarry Smith 502d382aafbSBarry Smith M*/ 503d382aafbSBarry Smith #define PETSC_DETERMINE PETSC_DECIDE 504d382aafbSBarry Smith 505d382aafbSBarry Smith /*MC 506557d4da8SBarry Smith PETSC_DEFAULT - standard way of passing in integer or floating point parameter 507557d4da8SBarry Smith where you wish PETSc to use the default. 508557d4da8SBarry Smith 509557d4da8SBarry Smith Level: beginner 510557d4da8SBarry Smith 511557d4da8SBarry Smith Fortran Notes: You need to use PETSC_DEFAULT_INTEGER or PETSC_DEFAULT_DOUBLE_PRECISION. 512557d4da8SBarry Smith 513557d4da8SBarry Smith .seealso: PETSC_DECIDE, PETSC_NULL, PETSC_IGNORE, PETSC_DETERMINE 514557d4da8SBarry Smith 515557d4da8SBarry Smith M*/ 516557d4da8SBarry Smith #define PETSC_DEFAULT -2 517557d4da8SBarry Smith 518557d4da8SBarry Smith /*MC 519d382aafbSBarry Smith PETSC_COMM_WORLD - the equivalent of the MPI_COMM_WORLD communicator which represents 520d382aafbSBarry Smith all the processs that PETSc knows about. 521d382aafbSBarry Smith 522d382aafbSBarry Smith Level: beginner 523d382aafbSBarry Smith 524d382aafbSBarry Smith Notes: By default PETSC_COMM_WORLD and MPI_COMM_WORLD are identical unless you wish to 525d382aafbSBarry Smith run PETSc on ONLY a subset of MPI_COMM_WORLD. In that case create your new (smaller) 526d382aafbSBarry Smith communicator, call it, say comm, and set PETSC_COMM_WORLD = comm BEFORE calling 527d382aafbSBarry Smith PetscInitialize() 528d382aafbSBarry Smith 529d382aafbSBarry Smith .seealso: PETSC_COMM_SELF 530d382aafbSBarry Smith 531d382aafbSBarry Smith M*/ 532d382aafbSBarry Smith extern MPI_Comm PETSC_COMM_WORLD; 533d382aafbSBarry Smith 534d382aafbSBarry Smith /*MC 535503cfb0cSBarry Smith PETSC_COMM_SELF - This is always MPI_COMM_SELF 536d382aafbSBarry Smith 537d382aafbSBarry Smith Level: beginner 538d382aafbSBarry Smith 539d382aafbSBarry Smith .seealso: PETSC_COMM_WORLD 540d382aafbSBarry Smith 541d382aafbSBarry Smith M*/ 542d382aafbSBarry Smith #define PETSC_COMM_SELF MPI_COMM_SELF 543d382aafbSBarry Smith 5447087cfbeSBarry Smith extern PetscBool PetscInitializeCalled; 5457087cfbeSBarry Smith extern PetscBool PetscFinalizeCalled; 546d382aafbSBarry Smith 5477087cfbeSBarry Smith extern PetscErrorCode PetscSetHelpVersionFunctions(PetscErrorCode (*)(MPI_Comm),PetscErrorCode (*)(MPI_Comm)); 5487087cfbeSBarry Smith extern PetscErrorCode PetscCommDuplicate(MPI_Comm,MPI_Comm*,int*); 5497087cfbeSBarry Smith extern PetscErrorCode PetscCommDestroy(MPI_Comm*); 550d382aafbSBarry Smith 551d382aafbSBarry Smith /*MC 552d382aafbSBarry Smith PetscMalloc - Allocates memory 553d382aafbSBarry Smith 554eca87e8dSBarry Smith Synopsis: 555eca87e8dSBarry Smith PetscErrorCode PetscMalloc(size_t m,void **result) 556eca87e8dSBarry Smith 557eca87e8dSBarry Smith Not Collective 558eca87e8dSBarry Smith 559d382aafbSBarry Smith Input Parameter: 560d382aafbSBarry Smith . m - number of bytes to allocate 561d382aafbSBarry Smith 562d382aafbSBarry Smith Output Parameter: 563d382aafbSBarry Smith . result - memory allocated 564d382aafbSBarry Smith 565d382aafbSBarry Smith Level: beginner 566d382aafbSBarry Smith 567d382aafbSBarry Smith Notes: Memory is always allocated at least double aligned 568d382aafbSBarry Smith 569d382aafbSBarry Smith If you request memory of zero size it will allocate no space and assign the pointer to 0; PetscFree() will 570d382aafbSBarry Smith properly handle not freeing the null pointer. 571d382aafbSBarry Smith 572d382aafbSBarry Smith .seealso: PetscFree(), PetscNew() 573d382aafbSBarry Smith 574d382aafbSBarry Smith Concepts: memory allocation 575d382aafbSBarry Smith 576d382aafbSBarry Smith M*/ 5772714b66aSJed Brown #define PetscMalloc(a,b) ((a != 0) ? (*PetscTrMalloc)((a),__LINE__,PETSC_FUNCTION_NAME,__FILE__,__SDIR__,(void**)(b)) : (*(b) = 0,0) ) 578d382aafbSBarry Smith 579d382aafbSBarry Smith /*MC 580503cfb0cSBarry Smith PetscAddrAlign - Rounds up an address to PETSC_MEMALIGN alignment 581d382aafbSBarry Smith 582d382aafbSBarry Smith Synopsis: 583d382aafbSBarry Smith void *PetscAddrAlign(void *addr) 584d382aafbSBarry Smith 585eca87e8dSBarry Smith Not Collective 586eca87e8dSBarry Smith 587eca87e8dSBarry Smith Input Parameters: 588eca87e8dSBarry Smith . addr - address to align (any pointer type) 589eca87e8dSBarry Smith 590d382aafbSBarry Smith Level: developer 591d382aafbSBarry Smith 592d382aafbSBarry Smith .seealso: PetscMallocAlign() 593d382aafbSBarry Smith 594d382aafbSBarry Smith Concepts: memory allocation 595d382aafbSBarry Smith M*/ 596d382aafbSBarry Smith #define PetscAddrAlign(a) (void*)((((PETSC_UINTPTR_T)(a))+(PETSC_MEMALIGN-1)) & ~(PETSC_MEMALIGN-1)) 597d382aafbSBarry Smith 598d382aafbSBarry Smith /*MC 599503cfb0cSBarry Smith PetscMalloc2 - Allocates 2 chunks of memory both aligned to PETSC_MEMALIGN 600d382aafbSBarry Smith 601eca87e8dSBarry Smith Synopsis: 602eca87e8dSBarry Smith PetscErrorCode PetscMalloc2(size_t m1,type, t1,void **r1,size_t m2,type t2,void **r2) 603eca87e8dSBarry Smith 604eca87e8dSBarry Smith Not Collective 605eca87e8dSBarry Smith 606d382aafbSBarry Smith Input Parameter: 607d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 608d382aafbSBarry Smith . t1 - type of first memory elements 609d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 610d382aafbSBarry Smith - t2 - type of second memory elements 611d382aafbSBarry Smith 612d382aafbSBarry Smith Output Parameter: 613d382aafbSBarry Smith + r1 - memory allocated in first chunk 614d382aafbSBarry Smith - r2 - memory allocated in second chunk 615d382aafbSBarry Smith 616d382aafbSBarry Smith Level: developer 617d382aafbSBarry Smith 618d382aafbSBarry Smith .seealso: PetscFree(), PetscNew(), PetscMalloc() 619d382aafbSBarry Smith 620d382aafbSBarry Smith Concepts: memory allocation 621d382aafbSBarry Smith 622d382aafbSBarry Smith M*/ 623d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 624d382aafbSBarry Smith #define PetscMalloc2(m1,t1,r1,m2,t2,r2) (PetscMalloc((m1)*sizeof(t1),r1) || PetscMalloc((m2)*sizeof(t2),r2)) 625d382aafbSBarry Smith #else 6263b98c0a2SBarry Smith #define PetscMalloc2(m1,t1,r1,m2,t2,r2) ((*(r2) = 0,PetscMalloc((m1)*sizeof(t1)+(m2)*sizeof(t2)+(PETSC_MEMALIGN-1),r1)) \ 627d382aafbSBarry Smith || (*(r2) = (t2*)PetscAddrAlign(*(r1)+m1),0)) 628d382aafbSBarry Smith #endif 629d382aafbSBarry Smith 630d382aafbSBarry Smith /*MC 631503cfb0cSBarry Smith PetscMalloc3 - Allocates 3 chunks of memory all aligned to PETSC_MEMALIGN 632d382aafbSBarry Smith 633eca87e8dSBarry Smith Synopsis: 634eca87e8dSBarry Smith PetscErrorCode PetscMalloc3(size_t m1,type, t1,void **r1,size_t m2,type t2,void **r2,size_t m3,type t3,void **r3) 635eca87e8dSBarry Smith 636eca87e8dSBarry Smith Not Collective 637eca87e8dSBarry Smith 638d382aafbSBarry Smith Input Parameter: 639d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 640d382aafbSBarry Smith . t1 - type of first memory elements 641d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 642d382aafbSBarry Smith . t2 - type of second memory elements 643d382aafbSBarry Smith . m3 - number of elements to allocate in 3rd chunk (may be zero) 644d382aafbSBarry Smith - t3 - type of third memory elements 645d382aafbSBarry Smith 646d382aafbSBarry Smith Output Parameter: 647d382aafbSBarry Smith + r1 - memory allocated in first chunk 648d382aafbSBarry Smith . r2 - memory allocated in second chunk 649d382aafbSBarry Smith - r3 - memory allocated in third chunk 650d382aafbSBarry Smith 651d382aafbSBarry Smith Level: developer 652d382aafbSBarry Smith 653d382aafbSBarry Smith .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree3() 654d382aafbSBarry Smith 655d382aafbSBarry Smith Concepts: memory allocation 656d382aafbSBarry Smith 657d382aafbSBarry Smith M*/ 658d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 659d382aafbSBarry Smith #define PetscMalloc3(m1,t1,r1,m2,t2,r2,m3,t3,r3) (PetscMalloc((m1)*sizeof(t1),r1) || PetscMalloc((m2)*sizeof(t2),r2) || PetscMalloc((m3)*sizeof(t3),r3)) 660d382aafbSBarry Smith #else 6613b98c0a2SBarry Smith #define PetscMalloc3(m1,t1,r1,m2,t2,r2,m3,t3,r3) ((*(r2) = 0,*(r3) = 0,PetscMalloc((m1)*sizeof(t1)+(m2)*sizeof(t2)+(m3)*sizeof(t3)+2*(PETSC_MEMALIGN-1),r1)) \ 662d382aafbSBarry Smith || (*(r2) = (t2*)PetscAddrAlign(*(r1)+m1),*(r3) = (t3*)PetscAddrAlign(*(r2)+m2),0)) 663d382aafbSBarry Smith #endif 664d382aafbSBarry Smith 665d382aafbSBarry Smith /*MC 666503cfb0cSBarry Smith PetscMalloc4 - Allocates 4 chunks of memory all aligned to PETSC_MEMALIGN 667d382aafbSBarry Smith 668eca87e8dSBarry Smith Synopsis: 669eca87e8dSBarry Smith PetscErrorCode PetscMalloc4(size_t m1,type, t1,void **r1,size_t m2,type t2,void **r2,size_t m3,type t3,void **r3,size_t m4,type t4,void **r4) 670eca87e8dSBarry Smith 671eca87e8dSBarry Smith Not Collective 672eca87e8dSBarry Smith 673d382aafbSBarry Smith Input Parameter: 674d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 675d382aafbSBarry Smith . t1 - type of first memory elements 676d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 677d382aafbSBarry Smith . t2 - type of second memory elements 678d382aafbSBarry Smith . m3 - number of elements to allocate in 3rd chunk (may be zero) 679d382aafbSBarry Smith . t3 - type of third memory elements 680d382aafbSBarry Smith . m4 - number of elements to allocate in 4th chunk (may be zero) 681d382aafbSBarry Smith - t4 - type of fourth memory elements 682d382aafbSBarry Smith 683d382aafbSBarry Smith Output Parameter: 684d382aafbSBarry Smith + r1 - memory allocated in first chunk 685d382aafbSBarry Smith . r2 - memory allocated in second chunk 686d382aafbSBarry Smith . r3 - memory allocated in third chunk 687d382aafbSBarry Smith - r4 - memory allocated in fourth chunk 688d382aafbSBarry Smith 689d382aafbSBarry Smith Level: developer 690d382aafbSBarry Smith 691d382aafbSBarry Smith .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree3(), PetscFree4() 692d382aafbSBarry Smith 693d382aafbSBarry Smith Concepts: memory allocation 694d382aafbSBarry Smith 695d382aafbSBarry Smith M*/ 696d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 697d382aafbSBarry Smith #define PetscMalloc4(m1,t1,r1,m2,t2,r2,m3,t3,r3,m4,t4,r4) (PetscMalloc((m1)*sizeof(t1),r1) || PetscMalloc((m2)*sizeof(t2),r2) || PetscMalloc((m3)*sizeof(t3),r3) || PetscMalloc((m4)*sizeof(t4),r4)) 698d382aafbSBarry Smith #else 699d382aafbSBarry Smith #define PetscMalloc4(m1,t1,r1,m2,t2,r2,m3,t3,r3,m4,t4,r4) \ 7003b98c0a2SBarry Smith ((*(r2) = 0, *(r3) = 0, *(r4) = 0,PetscMalloc((m1)*sizeof(t1)+(m2)*sizeof(t2)+(m3)*sizeof(t3)+(m4)*sizeof(t4)+3*(PETSC_MEMALIGN-1),r1)) \ 701d382aafbSBarry Smith || (*(r2) = (t2*)PetscAddrAlign(*(r1)+m1),*(r3) = (t3*)PetscAddrAlign(*(r2)+m2),*(r4) = (t4*)PetscAddrAlign(*(r3)+m3),0)) 702d382aafbSBarry Smith #endif 703d382aafbSBarry Smith 704d382aafbSBarry Smith /*MC 705503cfb0cSBarry Smith PetscMalloc5 - Allocates 5 chunks of memory all aligned to PETSC_MEMALIGN 706d382aafbSBarry Smith 707eca87e8dSBarry Smith Synopsis: 708eca87e8dSBarry Smith PetscErrorCode PetscMalloc5(size_t m1,type, t1,void **r1,size_t m2,type t2,void **r2,size_t m3,type t3,void **r3,size_t m4,type t4,void **r4,size_t m5,type t5,void **r5) 709eca87e8dSBarry Smith 710eca87e8dSBarry Smith Not Collective 711eca87e8dSBarry Smith 712d382aafbSBarry Smith Input Parameter: 713d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 714d382aafbSBarry Smith . t1 - type of first memory elements 715d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 716d382aafbSBarry Smith . t2 - type of second memory elements 717d382aafbSBarry Smith . m3 - number of elements to allocate in 3rd chunk (may be zero) 718d382aafbSBarry Smith . t3 - type of third memory elements 719d382aafbSBarry Smith . m4 - number of elements to allocate in 4th chunk (may be zero) 720d382aafbSBarry Smith . t4 - type of fourth memory elements 721d382aafbSBarry Smith . m5 - number of elements to allocate in 5th chunk (may be zero) 722d382aafbSBarry Smith - t5 - type of fifth memory elements 723d382aafbSBarry Smith 724d382aafbSBarry Smith Output Parameter: 725d382aafbSBarry Smith + r1 - memory allocated in first chunk 726d382aafbSBarry Smith . r2 - memory allocated in second chunk 727d382aafbSBarry Smith . r3 - memory allocated in third chunk 728d382aafbSBarry Smith . r4 - memory allocated in fourth chunk 729d382aafbSBarry Smith - r5 - memory allocated in fifth chunk 730d382aafbSBarry Smith 731d382aafbSBarry Smith Level: developer 732d382aafbSBarry Smith 733d382aafbSBarry Smith .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree3(), PetscFree4(), PetscFree5() 734d382aafbSBarry Smith 735d382aafbSBarry Smith Concepts: memory allocation 736d382aafbSBarry Smith 737d382aafbSBarry Smith M*/ 738d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 739d382aafbSBarry Smith #define PetscMalloc5(m1,t1,r1,m2,t2,r2,m3,t3,r3,m4,t4,r4,m5,t5,r5) (PetscMalloc((m1)*sizeof(t1),r1) || PetscMalloc((m2)*sizeof(t2),r2) || PetscMalloc((m3)*sizeof(t3),r3) || PetscMalloc((m4)*sizeof(t4),r4) || PetscMalloc((m5)*sizeof(t5),r5)) 740d382aafbSBarry Smith #else 741d382aafbSBarry Smith #define PetscMalloc5(m1,t1,r1,m2,t2,r2,m3,t3,r3,m4,t4,r4,m5,t5,r5) \ 7423b98c0a2SBarry Smith ((*(r2) = 0, *(r3) = 0, *(r4) = 0,*(r5) = 0,PetscMalloc((m1)*sizeof(t1)+(m2)*sizeof(t2)+(m3)*sizeof(t3)+(m4)*sizeof(t4)+(m5)*sizeof(t5)+4*(PETSC_MEMALIGN-1),r1)) \ 743d382aafbSBarry Smith || (*(r2) = (t2*)PetscAddrAlign(*(r1)+m1),*(r3) = (t3*)PetscAddrAlign(*(r2)+m2),*(r4) = (t4*)PetscAddrAlign(*(r3)+m3),*(r5) = (t5*)PetscAddrAlign(*(r4)+m4),0)) 744d382aafbSBarry Smith #endif 745d382aafbSBarry Smith 746d382aafbSBarry Smith 747d382aafbSBarry Smith /*MC 748503cfb0cSBarry Smith PetscMalloc6 - Allocates 6 chunks of memory all aligned to PETSC_MEMALIGN 749d382aafbSBarry Smith 750eca87e8dSBarry Smith Synopsis: 751eca87e8dSBarry Smith PetscErrorCode PetscMalloc6(size_t m1,type, t1,void **r1,size_t m2,type t2,void **r2,size_t m3,type t3,void **r3,size_t m4,type t4,void **r4,size_t m5,type t5,void **r5,size_t m6,type t6,void **r6) 752eca87e8dSBarry Smith 753eca87e8dSBarry Smith Not Collective 754eca87e8dSBarry Smith 755d382aafbSBarry Smith Input Parameter: 756d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 757d382aafbSBarry Smith . t1 - type of first memory elements 758d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 759d382aafbSBarry Smith . t2 - type of second memory elements 760d382aafbSBarry Smith . m3 - number of elements to allocate in 3rd chunk (may be zero) 761d382aafbSBarry Smith . t3 - type of third memory elements 762d382aafbSBarry Smith . m4 - number of elements to allocate in 4th chunk (may be zero) 763d382aafbSBarry Smith . t4 - type of fourth memory elements 764d382aafbSBarry Smith . m5 - number of elements to allocate in 5th chunk (may be zero) 765d382aafbSBarry Smith . t5 - type of fifth memory elements 766d382aafbSBarry Smith . m6 - number of elements to allocate in 6th chunk (may be zero) 767d382aafbSBarry Smith - t6 - type of sixth memory elements 768d382aafbSBarry Smith 769d382aafbSBarry Smith Output Parameter: 770d382aafbSBarry Smith + r1 - memory allocated in first chunk 771d382aafbSBarry Smith . r2 - memory allocated in second chunk 772d382aafbSBarry Smith . r3 - memory allocated in third chunk 773d382aafbSBarry Smith . r4 - memory allocated in fourth chunk 774d382aafbSBarry Smith . r5 - memory allocated in fifth chunk 775d382aafbSBarry Smith - r6 - memory allocated in sixth chunk 776d382aafbSBarry Smith 777d382aafbSBarry Smith Level: developer 778d382aafbSBarry Smith 779d382aafbSBarry Smith .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree3(), PetscFree4(), PetscFree5(), PetscFree6() 780d382aafbSBarry Smith 781d382aafbSBarry Smith Concepts: memory allocation 782d382aafbSBarry Smith 783d382aafbSBarry Smith M*/ 784d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 785d382aafbSBarry Smith #define PetscMalloc6(m1,t1,r1,m2,t2,r2,m3,t3,r3,m4,t4,r4,m5,t5,r5,m6,t6,r6) (PetscMalloc((m1)*sizeof(t1),r1) || PetscMalloc((m2)*sizeof(t2),r2) || PetscMalloc((m3)*sizeof(t3),r3) || PetscMalloc((m4)*sizeof(t4),r4) || PetscMalloc((m5)*sizeof(t5),r5) || PetscMalloc((m6)*sizeof(t6),r6)) 786d382aafbSBarry Smith #else 787d382aafbSBarry Smith #define PetscMalloc6(m1,t1,r1,m2,t2,r2,m3,t3,r3,m4,t4,r4,m5,t5,r5,m6,t6,r6) \ 7883b98c0a2SBarry Smith ((*(r2) = 0, *(r3) = 0, *(r4) = 0,*(r5) = 0,*(r6) = 0,PetscMalloc((m1)*sizeof(t1)+(m2)*sizeof(t2)+(m3)*sizeof(t3)+(m4)*sizeof(t4)+(m5)*sizeof(t5)+(m6)*sizeof(t6)+5*(PETSC_MEMALIGN-1),r1)) \ 789d382aafbSBarry Smith || (*(r2) = (t2*)PetscAddrAlign(*(r1)+m1),*(r3) = (t3*)PetscAddrAlign(*(r2)+m2),*(r4) = (t4*)PetscAddrAlign(*(r3)+m3),*(r5) = (t5*)PetscAddrAlign(*(r4)+m4),*(r6) = (t6*)PetscAddrAlign(*(r5)+m5),0)) 790d382aafbSBarry Smith #endif 791d382aafbSBarry Smith 792d382aafbSBarry Smith /*MC 793503cfb0cSBarry Smith PetscMalloc7 - Allocates 7 chunks of memory all aligned to PETSC_MEMALIGN 794d382aafbSBarry Smith 795eca87e8dSBarry Smith Synopsis: 796eca87e8dSBarry Smith PetscErrorCode PetscMalloc7(size_t m1,type, t1,void **r1,size_t m2,type t2,void **r2,size_t m3,type t3,void **r3,size_t m4,type t4,void **r4,size_t m5,type t5,void **r5,size_t m6,type t6,void **r6,size_t m7,type t7,void **r7) 797eca87e8dSBarry Smith 798eca87e8dSBarry Smith Not Collective 799eca87e8dSBarry Smith 800d382aafbSBarry Smith Input Parameter: 801d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 802d382aafbSBarry Smith . t1 - type of first memory elements 803d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 804d382aafbSBarry Smith . t2 - type of second memory elements 805d382aafbSBarry Smith . m3 - number of elements to allocate in 3rd chunk (may be zero) 806d382aafbSBarry Smith . t3 - type of third memory elements 807d382aafbSBarry Smith . m4 - number of elements to allocate in 4th chunk (may be zero) 808d382aafbSBarry Smith . t4 - type of fourth memory elements 809d382aafbSBarry Smith . m5 - number of elements to allocate in 5th chunk (may be zero) 810d382aafbSBarry Smith . t5 - type of fifth memory elements 811d382aafbSBarry Smith . m6 - number of elements to allocate in 6th chunk (may be zero) 812d382aafbSBarry Smith . t6 - type of sixth memory elements 813d382aafbSBarry Smith . m7 - number of elements to allocate in 7th chunk (may be zero) 814d382aafbSBarry Smith - t7 - type of sixth memory elements 815d382aafbSBarry Smith 816d382aafbSBarry Smith Output Parameter: 817d382aafbSBarry Smith + r1 - memory allocated in first chunk 818d382aafbSBarry Smith . r2 - memory allocated in second chunk 819d382aafbSBarry Smith . r3 - memory allocated in third chunk 820d382aafbSBarry Smith . r4 - memory allocated in fourth chunk 821d382aafbSBarry Smith . r5 - memory allocated in fifth chunk 822d382aafbSBarry Smith . r6 - memory allocated in sixth chunk 823eca87e8dSBarry Smith - r7 - memory allocated in seventh chunk 824d382aafbSBarry Smith 825d382aafbSBarry Smith Level: developer 826d382aafbSBarry Smith 827d382aafbSBarry Smith .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree3(), PetscFree4(), PetscFree5(), PetscFree6(), PetscFree7() 828d382aafbSBarry Smith 829d382aafbSBarry Smith Concepts: memory allocation 830d382aafbSBarry Smith 831d382aafbSBarry Smith M*/ 832d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 833d382aafbSBarry Smith #define PetscMalloc7(m1,t1,r1,m2,t2,r2,m3,t3,r3,m4,t4,r4,m5,t5,r5,m6,t6,r6,m7,t7,r7) (PetscMalloc((m1)*sizeof(t1),r1) || PetscMalloc((m2)*sizeof(t2),r2) || PetscMalloc((m3)*sizeof(t3),r3) || PetscMalloc((m4)*sizeof(t4),r4) || PetscMalloc((m5)*sizeof(t5),r5) || PetscMalloc((m6)*sizeof(t6),r6) || PetscMalloc((m7)*sizeof(t7),r7)) 834d382aafbSBarry Smith #else 835d382aafbSBarry Smith #define PetscMalloc7(m1,t1,r1,m2,t2,r2,m3,t3,r3,m4,t4,r4,m5,t5,r5,m6,t6,r6,m7,t7,r7) \ 8363b98c0a2SBarry Smith ((*(r2) = 0, *(r3) = 0, *(r4) = 0,*(r5) = 0,*(r6) = 0,*(r7) = 0,PetscMalloc((m1)*sizeof(t1)+(m2)*sizeof(t2)+(m3)*sizeof(t3)+(m4)*sizeof(t4)+(m5)*sizeof(t5)+(m6)*sizeof(t6)+(m7)*sizeof(t7)+6*(PETSC_MEMALIGN-1),r1)) \ 837d382aafbSBarry Smith || (*(r2) = (t2*)PetscAddrAlign(*(r1)+m1),*(r3) = (t3*)PetscAddrAlign(*(r2)+m2),*(r4) = (t4*)PetscAddrAlign(*(r3)+m3),*(r5) = (t5*)PetscAddrAlign(*(r4)+m4),*(r6) = (t6*)PetscAddrAlign(*(r5)+m5),*(r7) = (t7*)PetscAddrAlign(*(r6)+m6),0)) 838d382aafbSBarry Smith #endif 839d382aafbSBarry Smith 840d382aafbSBarry Smith /*MC 841503cfb0cSBarry Smith PetscNew - Allocates memory of a particular type, zeros the memory! Aligned to PETSC_MEMALIGN 842d382aafbSBarry Smith 843eca87e8dSBarry Smith Synopsis: 844eca87e8dSBarry Smith PetscErrorCode PetscNew(struct type,((type *))result) 845eca87e8dSBarry Smith 846eca87e8dSBarry Smith Not Collective 847eca87e8dSBarry Smith 848d382aafbSBarry Smith Input Parameter: 849d382aafbSBarry Smith . type - structure name of space to be allocated. Memory of size sizeof(type) is allocated 850d382aafbSBarry Smith 851d382aafbSBarry Smith Output Parameter: 852d382aafbSBarry Smith . result - memory allocated 853d382aafbSBarry Smith 854d382aafbSBarry Smith Level: beginner 855d382aafbSBarry Smith 856ad0619ddSBarry Smith .seealso: PetscFree(), PetscMalloc(), PetscNewLog() 857d382aafbSBarry Smith 858d382aafbSBarry Smith Concepts: memory allocation 859d382aafbSBarry Smith 860d382aafbSBarry Smith M*/ 861d382aafbSBarry Smith #define PetscNew(A,b) (PetscMalloc(sizeof(A),(b)) || PetscMemzero(*(b),sizeof(A))) 862ad0619ddSBarry Smith 863ad0619ddSBarry Smith /*MC 864ad0619ddSBarry Smith PetscNewLog - Allocates memory of a particular type, zeros the memory! Aligned to PETSC_MEMALIGN. Associates the memory allocated 865ad0619ddSBarry Smith with the given object using PetscLogObjectMemory(). 866ad0619ddSBarry Smith 867ad0619ddSBarry Smith Synopsis: 868ad0619ddSBarry Smith PetscErrorCode PetscNewLog(PetscObject obj,struct type,((type *))result) 869ad0619ddSBarry Smith 870ad0619ddSBarry Smith Not Collective 871ad0619ddSBarry Smith 872ad0619ddSBarry Smith Input Parameter: 873ad0619ddSBarry Smith + obj - object memory is logged to 874ad0619ddSBarry Smith - type - structure name of space to be allocated. Memory of size sizeof(type) is allocated 875ad0619ddSBarry Smith 876ad0619ddSBarry Smith Output Parameter: 877ad0619ddSBarry Smith . result - memory allocated 878ad0619ddSBarry Smith 879ad0619ddSBarry Smith Level: developer 880ad0619ddSBarry Smith 881ad0619ddSBarry Smith .seealso: PetscFree(), PetscMalloc(), PetscNew(), PetscLogObjectMemory() 882ad0619ddSBarry Smith 883ad0619ddSBarry Smith Concepts: memory allocation 884ad0619ddSBarry Smith 885ad0619ddSBarry Smith M*/ 886d382aafbSBarry Smith #define PetscNewLog(o,A,b) (PetscNew(A,b) || ((o) ? PetscLogObjectMemory(o,sizeof(A)) : 0)) 887d382aafbSBarry Smith 888d382aafbSBarry Smith /*MC 889d382aafbSBarry Smith PetscFree - Frees memory 890d382aafbSBarry Smith 891eca87e8dSBarry Smith Synopsis: 892eca87e8dSBarry Smith PetscErrorCode PetscFree(void *memory) 893eca87e8dSBarry Smith 894eca87e8dSBarry Smith Not Collective 895eca87e8dSBarry Smith 896d382aafbSBarry Smith Input Parameter: 897d382aafbSBarry Smith . memory - memory to free (the pointer is ALWAYS set to 0 upon sucess) 898d382aafbSBarry Smith 899d382aafbSBarry Smith Level: beginner 900d382aafbSBarry Smith 901d382aafbSBarry Smith Notes: Memory must have been obtained with PetscNew() or PetscMalloc() 902d382aafbSBarry Smith 903d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscFreeVoid() 904d382aafbSBarry Smith 905d382aafbSBarry Smith Concepts: memory allocation 906d382aafbSBarry Smith 907d382aafbSBarry Smith M*/ 90812537b14SJed Brown #define PetscFree(a) ((a) && ((*PetscTrFree)((void*)(a),__LINE__,PETSC_FUNCTION_NAME,__FILE__,__SDIR__) || ((a) = 0,0))) 909d382aafbSBarry Smith 910d382aafbSBarry Smith /*MC 911d382aafbSBarry Smith PetscFreeVoid - Frees memory 912d382aafbSBarry Smith 913d382aafbSBarry Smith Synopsis: 914d382aafbSBarry Smith void PetscFreeVoid(void *memory) 915d382aafbSBarry Smith 916eca87e8dSBarry Smith Not Collective 917eca87e8dSBarry Smith 918eca87e8dSBarry Smith Input Parameter: 919eca87e8dSBarry Smith . memory - memory to free 920eca87e8dSBarry Smith 921d382aafbSBarry Smith Level: beginner 922d382aafbSBarry Smith 923d382aafbSBarry Smith Notes: This is different from PetscFree() in that no error code is returned 924d382aafbSBarry Smith 925d382aafbSBarry Smith .seealso: PetscFree(), PetscNew(), PetscMalloc() 926d382aafbSBarry Smith 927d382aafbSBarry Smith Concepts: memory allocation 928d382aafbSBarry Smith 929d382aafbSBarry Smith M*/ 9302714b66aSJed Brown #define PetscFreeVoid(a) ((*PetscTrFree)((a),__LINE__,PETSC_FUNCTION_NAME,__FILE__,__SDIR__),(a) = 0) 931d382aafbSBarry Smith 932d382aafbSBarry Smith 933d382aafbSBarry Smith /*MC 934d382aafbSBarry Smith PetscFree2 - Frees 2 chunks of memory obtained with PetscMalloc2() 935d382aafbSBarry Smith 936eca87e8dSBarry Smith Synopsis: 937eca87e8dSBarry Smith PetscErrorCode PetscFree2(void *memory1,void *memory2) 938eca87e8dSBarry Smith 939eca87e8dSBarry Smith Not Collective 940eca87e8dSBarry Smith 941d382aafbSBarry Smith Input Parameter: 942d382aafbSBarry Smith + memory1 - memory to free 943d382aafbSBarry Smith - memory2 - 2nd memory to free 944d382aafbSBarry Smith 945d382aafbSBarry Smith Level: developer 946d382aafbSBarry Smith 947d382aafbSBarry Smith Notes: Memory must have been obtained with PetscMalloc2() 948d382aafbSBarry Smith 949d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree() 950d382aafbSBarry Smith 951d382aafbSBarry Smith Concepts: memory allocation 952d382aafbSBarry Smith 953d382aafbSBarry Smith M*/ 954d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 955d382aafbSBarry Smith #define PetscFree2(m1,m2) (PetscFree(m2) || PetscFree(m1)) 956d382aafbSBarry Smith #else 95781dabb53SJed Brown #define PetscFree2(m1,m2) ((m2)=0, PetscFree(m1)) 958d382aafbSBarry Smith #endif 959d382aafbSBarry Smith 960d382aafbSBarry Smith /*MC 961d382aafbSBarry Smith PetscFree3 - Frees 3 chunks of memory obtained with PetscMalloc3() 962d382aafbSBarry Smith 963eca87e8dSBarry Smith Synopsis: 964eca87e8dSBarry Smith PetscErrorCode PetscFree3(void *memory1,void *memory2,void *memory3) 965eca87e8dSBarry Smith 966eca87e8dSBarry Smith Not Collective 967eca87e8dSBarry Smith 968d382aafbSBarry Smith Input Parameter: 969d382aafbSBarry Smith + memory1 - memory to free 970d382aafbSBarry Smith . memory2 - 2nd memory to free 971d382aafbSBarry Smith - memory3 - 3rd memory to free 972d382aafbSBarry Smith 973d382aafbSBarry Smith Level: developer 974d382aafbSBarry Smith 975d382aafbSBarry Smith Notes: Memory must have been obtained with PetscMalloc3() 976d382aafbSBarry Smith 977d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree(), PetscMalloc3() 978d382aafbSBarry Smith 979d382aafbSBarry Smith Concepts: memory allocation 980d382aafbSBarry Smith 981d382aafbSBarry Smith M*/ 982d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 983d382aafbSBarry Smith #define PetscFree3(m1,m2,m3) (PetscFree(m3) || PetscFree(m2) || PetscFree(m1)) 984d382aafbSBarry Smith #else 98581dabb53SJed Brown #define PetscFree3(m1,m2,m3) ((m3)=0,(m2)=0,PetscFree(m1)) 986d382aafbSBarry Smith #endif 987d382aafbSBarry Smith 988d382aafbSBarry Smith /*MC 989d382aafbSBarry Smith PetscFree4 - Frees 4 chunks of memory obtained with PetscMalloc4() 990d382aafbSBarry Smith 991eca87e8dSBarry Smith Synopsis: 992eca87e8dSBarry Smith PetscErrorCode PetscFree4(void *m1,void *m2,void *m3,void *m4) 993eca87e8dSBarry Smith 994eca87e8dSBarry Smith Not Collective 995eca87e8dSBarry Smith 996d382aafbSBarry Smith Input Parameter: 997d382aafbSBarry Smith + m1 - memory to free 998d382aafbSBarry Smith . m2 - 2nd memory to free 999d382aafbSBarry Smith . m3 - 3rd memory to free 1000d382aafbSBarry Smith - m4 - 4th memory to free 1001d382aafbSBarry Smith 1002d382aafbSBarry Smith Level: developer 1003d382aafbSBarry Smith 1004d382aafbSBarry Smith Notes: Memory must have been obtained with PetscMalloc4() 1005d382aafbSBarry Smith 1006d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree(), PetscMalloc3(), PetscMalloc4() 1007d382aafbSBarry Smith 1008d382aafbSBarry Smith Concepts: memory allocation 1009d382aafbSBarry Smith 1010d382aafbSBarry Smith M*/ 1011d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 1012d382aafbSBarry Smith #define PetscFree4(m1,m2,m3,m4) (PetscFree(m4) || PetscFree(m3) || PetscFree(m2) || PetscFree(m1)) 1013d382aafbSBarry Smith #else 101481dabb53SJed Brown #define PetscFree4(m1,m2,m3,m4) ((m4)=0,(m3)=0,(m2)=0,PetscFree(m1)) 1015d382aafbSBarry Smith #endif 1016d382aafbSBarry Smith 1017d382aafbSBarry Smith /*MC 1018d382aafbSBarry Smith PetscFree5 - Frees 5 chunks of memory obtained with PetscMalloc5() 1019d382aafbSBarry Smith 1020eca87e8dSBarry Smith Synopsis: 1021eca87e8dSBarry Smith PetscErrorCode PetscFree5(void *m1,void *m2,void *m3,void *m4,void *m5) 1022eca87e8dSBarry Smith 1023eca87e8dSBarry Smith Not Collective 1024eca87e8dSBarry Smith 1025d382aafbSBarry Smith Input Parameter: 1026d382aafbSBarry Smith + m1 - memory to free 1027d382aafbSBarry Smith . m2 - 2nd memory to free 1028d382aafbSBarry Smith . m3 - 3rd memory to free 1029d382aafbSBarry Smith . m4 - 4th memory to free 1030d382aafbSBarry Smith - m5 - 5th memory to free 1031d382aafbSBarry Smith 1032d382aafbSBarry Smith Level: developer 1033d382aafbSBarry Smith 1034d382aafbSBarry Smith Notes: Memory must have been obtained with PetscMalloc5() 1035d382aafbSBarry Smith 1036d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree(), PetscMalloc3(), PetscMalloc4(), PetscMalloc5() 1037d382aafbSBarry Smith 1038d382aafbSBarry Smith Concepts: memory allocation 1039d382aafbSBarry Smith 1040d382aafbSBarry Smith M*/ 1041d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 1042d382aafbSBarry Smith #define PetscFree5(m1,m2,m3,m4,m5) (PetscFree(m5) || PetscFree(m4) || PetscFree(m3) || PetscFree(m2) || PetscFree(m1)) 1043d382aafbSBarry Smith #else 104481dabb53SJed Brown #define PetscFree5(m1,m2,m3,m4,m5) ((m5)=0,(m4)=0,(m3)=0,(m2)=0,PetscFree(m1)) 1045d382aafbSBarry Smith #endif 1046d382aafbSBarry Smith 1047d382aafbSBarry Smith 1048d382aafbSBarry Smith /*MC 1049d382aafbSBarry Smith PetscFree6 - Frees 6 chunks of memory obtained with PetscMalloc6() 1050d382aafbSBarry Smith 1051eca87e8dSBarry Smith Synopsis: 1052eca87e8dSBarry Smith PetscErrorCode PetscFree6(void *m1,void *m2,void *m3,void *m4,void *m5,void *m6) 1053eca87e8dSBarry Smith 1054eca87e8dSBarry Smith Not Collective 1055eca87e8dSBarry Smith 1056d382aafbSBarry Smith Input Parameter: 1057d382aafbSBarry Smith + m1 - memory to free 1058d382aafbSBarry Smith . m2 - 2nd memory to free 1059d382aafbSBarry Smith . m3 - 3rd memory to free 1060d382aafbSBarry Smith . m4 - 4th memory to free 1061d382aafbSBarry Smith . m5 - 5th memory to free 1062d382aafbSBarry Smith - m6 - 6th memory to free 1063d382aafbSBarry Smith 1064d382aafbSBarry Smith 1065d382aafbSBarry Smith Level: developer 1066d382aafbSBarry Smith 1067d382aafbSBarry Smith Notes: Memory must have been obtained with PetscMalloc6() 1068d382aafbSBarry Smith 1069d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree(), PetscMalloc3(), PetscMalloc4(), PetscMalloc5(), PetscMalloc6() 1070d382aafbSBarry Smith 1071d382aafbSBarry Smith Concepts: memory allocation 1072d382aafbSBarry Smith 1073d382aafbSBarry Smith M*/ 1074d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 1075d382aafbSBarry Smith #define PetscFree6(m1,m2,m3,m4,m5,m6) (PetscFree(m6) || PetscFree(m5) || PetscFree(m4) || PetscFree(m3) || PetscFree(m2) || PetscFree(m1)) 1076d382aafbSBarry Smith #else 107781dabb53SJed Brown #define PetscFree6(m1,m2,m3,m4,m5,m6) ((m6)=0,(m5)=0,(m4)=0,(m3)=0,(m2)=0,PetscFree(m1)) 1078d382aafbSBarry Smith #endif 1079d382aafbSBarry Smith 1080d382aafbSBarry Smith /*MC 1081d382aafbSBarry Smith PetscFree7 - Frees 7 chunks of memory obtained with PetscMalloc7() 1082d382aafbSBarry Smith 1083eca87e8dSBarry Smith Synopsis: 1084eca87e8dSBarry Smith PetscErrorCode PetscFree7(void *m1,void *m2,void *m3,void *m4,void *m5,void *m6,void *m7) 1085eca87e8dSBarry Smith 1086eca87e8dSBarry Smith Not Collective 1087eca87e8dSBarry Smith 1088d382aafbSBarry Smith Input Parameter: 1089d382aafbSBarry Smith + m1 - memory to free 1090d382aafbSBarry Smith . m2 - 2nd memory to free 1091d382aafbSBarry Smith . m3 - 3rd memory to free 1092d382aafbSBarry Smith . m4 - 4th memory to free 1093d382aafbSBarry Smith . m5 - 5th memory to free 1094d382aafbSBarry Smith . m6 - 6th memory to free 1095d382aafbSBarry Smith - m7 - 7th memory to free 1096d382aafbSBarry Smith 1097d382aafbSBarry Smith 1098d382aafbSBarry Smith Level: developer 1099d382aafbSBarry Smith 1100d382aafbSBarry Smith Notes: Memory must have been obtained with PetscMalloc7() 1101d382aafbSBarry Smith 1102d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree(), PetscMalloc3(), PetscMalloc4(), PetscMalloc5(), PetscMalloc6(), 1103d382aafbSBarry Smith PetscMalloc7() 1104d382aafbSBarry Smith 1105d382aafbSBarry Smith Concepts: memory allocation 1106d382aafbSBarry Smith 1107d382aafbSBarry Smith M*/ 1108d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 1109d382aafbSBarry Smith #define PetscFree7(m1,m2,m3,m4,m5,m6,m7) (PetscFree(m7) || PetscFree(m6) || PetscFree(m5) || PetscFree(m4) || PetscFree(m3) || PetscFree(m2) || PetscFree(m1)) 1110d382aafbSBarry Smith #else 111181dabb53SJed Brown #define PetscFree7(m1,m2,m3,m4,m5,m6,m7) ((m7)=0,(m6)=0,(m5)=0,(m4)=0,(m3)=0,(m2)=0,PetscFree(m1)) 1112d382aafbSBarry Smith #endif 1113d382aafbSBarry Smith 11147087cfbeSBarry Smith extern PetscErrorCode (*PetscTrMalloc)(size_t,int,const char[],const char[],const char[],void**); 11157087cfbeSBarry Smith extern PetscErrorCode (*PetscTrFree)(void*,int,const char[],const char[],const char[]); 11167087cfbeSBarry Smith extern PetscErrorCode PetscMallocSet(PetscErrorCode (*)(size_t,int,const char[],const char[],const char[],void**),PetscErrorCode (*)(void*,int,const char[],const char[],const char[])); 11177087cfbeSBarry Smith extern PetscErrorCode PetscMallocClear(void); 1118d382aafbSBarry Smith 1119d382aafbSBarry Smith /* 112066d669d6SBarry Smith Routines for tracing memory corruption/bleeding with default PETSc memory allocation 1121d382aafbSBarry Smith */ 11227087cfbeSBarry Smith extern PetscErrorCode PetscMallocDump(FILE *); 11237087cfbeSBarry Smith extern PetscErrorCode PetscMallocDumpLog(FILE *); 11247087cfbeSBarry Smith extern PetscErrorCode PetscMallocGetCurrentUsage(PetscLogDouble *); 11257087cfbeSBarry Smith extern PetscErrorCode PetscMallocGetMaximumUsage(PetscLogDouble *); 11267087cfbeSBarry Smith extern PetscErrorCode PetscMallocDebug(PetscBool); 11277087cfbeSBarry Smith extern PetscErrorCode PetscMallocValidate(int,const char[],const char[],const char[]); 11287087cfbeSBarry Smith extern PetscErrorCode PetscMallocSetDumpLog(void); 1129d382aafbSBarry Smith 1130d382aafbSBarry Smith 1131d382aafbSBarry Smith /*E 1132d382aafbSBarry Smith PetscDataType - Used for handling different basic data types. 1133d382aafbSBarry Smith 1134d382aafbSBarry Smith Level: beginner 1135d382aafbSBarry Smith 1136d382aafbSBarry Smith Developer comment: It would be nice if we could always just use MPI Datatypes, why can we not? 1137d382aafbSBarry Smith 1138d382aafbSBarry Smith .seealso: PetscBinaryRead(), PetscBinaryWrite(), PetscDataTypeToMPIDataType(), 1139d382aafbSBarry Smith PetscDataTypeGetSize() 1140d382aafbSBarry Smith 1141d382aafbSBarry Smith E*/ 1142d382aafbSBarry Smith typedef enum {PETSC_INT = 0,PETSC_DOUBLE = 1,PETSC_COMPLEX = 2, PETSC_LONG = 3 ,PETSC_SHORT = 4,PETSC_FLOAT = 5, 1143557d4da8SBarry Smith PETSC_CHAR = 6,PETSC_BIT_LOGICAL = 7,PETSC_ENUM = 8,PETSC_BOOL=9, PETSC_LONG_DOUBLE = 10} PetscDataType; 1144d382aafbSBarry Smith extern const char *PetscDataTypes[]; 1145d382aafbSBarry Smith 1146d382aafbSBarry Smith #if defined(PETSC_USE_COMPLEX) 1147d382aafbSBarry Smith #define PETSC_SCALAR PETSC_COMPLEX 1148d382aafbSBarry Smith #else 1149ce63c4c1SBarry Smith #if defined(PETSC_USE_REAL_SINGLE) 1150d382aafbSBarry Smith #define PETSC_SCALAR PETSC_FLOAT 1151ce63c4c1SBarry Smith #elif defined(PETSC_USE_REAL_LONG_DOUBLE) 1152d382aafbSBarry Smith #define PETSC_SCALAR PETSC_LONG_DOUBLE 1153d382aafbSBarry Smith #else 1154d382aafbSBarry Smith #define PETSC_SCALAR PETSC_DOUBLE 1155d382aafbSBarry Smith #endif 1156d382aafbSBarry Smith #endif 1157ce63c4c1SBarry Smith #if defined(PETSC_USE_REAL_SINGLE) 1158d382aafbSBarry Smith #define PETSC_REAL PETSC_FLOAT 1159ce63c4c1SBarry Smith #elif defined(PETSC_USE_REAL_LONG_DOUBLE) 1160d382aafbSBarry Smith #define PETSC_REAL PETSC_LONG_DOUBLE 1161d382aafbSBarry Smith #else 1162d382aafbSBarry Smith #define PETSC_REAL PETSC_DOUBLE 1163d382aafbSBarry Smith #endif 1164d382aafbSBarry Smith #define PETSC_FORTRANADDR PETSC_LONG 1165d382aafbSBarry Smith 11667087cfbeSBarry Smith extern PetscErrorCode PetscDataTypeToMPIDataType(PetscDataType,MPI_Datatype*); 11677087cfbeSBarry Smith extern PetscErrorCode PetscMPIDataTypeToPetscDataType(MPI_Datatype,PetscDataType*); 11687087cfbeSBarry Smith extern PetscErrorCode PetscDataTypeGetSize(PetscDataType,size_t*); 1169d382aafbSBarry Smith 1170d382aafbSBarry Smith /* 1171d382aafbSBarry Smith Basic memory and string operations. These are usually simple wrappers 1172d382aafbSBarry Smith around the basic Unix system calls, but a few of them have additional 1173d382aafbSBarry Smith functionality and/or error checking. 1174d382aafbSBarry Smith */ 11757087cfbeSBarry Smith extern PetscErrorCode PetscBitMemcpy(void*,PetscInt,const void*,PetscInt,PetscInt,PetscDataType); 11767087cfbeSBarry Smith extern PetscErrorCode PetscMemmove(void*,void *,size_t); 11777087cfbeSBarry Smith extern PetscErrorCode PetscMemcmp(const void*,const void*,size_t,PetscBool *); 11787087cfbeSBarry Smith extern PetscErrorCode PetscStrlen(const char[],size_t*); 11797087cfbeSBarry Smith extern PetscErrorCode PetscStrToArray(const char[],int*,char ***); 11807087cfbeSBarry Smith extern PetscErrorCode PetscStrToArrayDestroy(int,char **); 11817087cfbeSBarry Smith extern PetscErrorCode PetscStrcmp(const char[],const char[],PetscBool *); 11827087cfbeSBarry Smith extern PetscErrorCode PetscStrgrt(const char[],const char[],PetscBool *); 11837087cfbeSBarry Smith extern PetscErrorCode PetscStrcasecmp(const char[],const char[],PetscBool *); 11847087cfbeSBarry Smith extern PetscErrorCode PetscStrncmp(const char[],const char[],size_t,PetscBool *); 11857087cfbeSBarry Smith extern PetscErrorCode PetscStrcpy(char[],const char[]); 11867087cfbeSBarry Smith extern PetscErrorCode PetscStrcat(char[],const char[]); 11877087cfbeSBarry Smith extern PetscErrorCode PetscStrncat(char[],const char[],size_t); 11887087cfbeSBarry Smith extern PetscErrorCode PetscStrncpy(char[],const char[],size_t); 11897087cfbeSBarry Smith extern PetscErrorCode PetscStrchr(const char[],char,char *[]); 11907087cfbeSBarry Smith extern PetscErrorCode PetscStrtolower(char[]); 11917087cfbeSBarry Smith extern PetscErrorCode PetscStrrchr(const char[],char,char *[]); 11927087cfbeSBarry Smith extern PetscErrorCode PetscStrstr(const char[],const char[],char *[]); 11937087cfbeSBarry Smith extern PetscErrorCode PetscStrrstr(const char[],const char[],char *[]); 119474722a09SBarry Smith extern PetscErrorCode PetscStrendswith(const char[],const char[],PetscBool*); 11957ba3a57cSBarry Smith extern PetscErrorCode PetscStrendswithwhich(const char[],const char *const*,PetscInt*); 11967087cfbeSBarry Smith extern PetscErrorCode PetscStrallocpy(const char[],char *[]); 11977087cfbeSBarry Smith extern PetscErrorCode PetscStrreplace(MPI_Comm,const char[],char[],size_t); 1198d382aafbSBarry Smith 1199d382aafbSBarry Smith /*S 1200d382aafbSBarry Smith PetscToken - 'Token' used for managing tokenizing strings 1201d382aafbSBarry Smith 1202d382aafbSBarry Smith Level: intermediate 1203d382aafbSBarry Smith 1204d382aafbSBarry Smith .seealso: PetscTokenCreate(), PetscTokenFind(), PetscTokenDestroy() 1205d382aafbSBarry Smith S*/ 1206d382aafbSBarry Smith typedef struct _p_PetscToken* PetscToken; 1207d382aafbSBarry Smith 12087087cfbeSBarry Smith extern PetscErrorCode PetscTokenCreate(const char[],const char,PetscToken*); 12097087cfbeSBarry Smith extern PetscErrorCode PetscTokenFind(PetscToken,char *[]); 12107087cfbeSBarry Smith extern PetscErrorCode PetscTokenDestroy(PetscToken); 1211d382aafbSBarry Smith 1212d382aafbSBarry Smith /* 1213d382aafbSBarry Smith These are MPI operations for MPI_Allreduce() etc 1214d382aafbSBarry Smith */ 12157087cfbeSBarry Smith extern MPI_Op PetscMaxSum_Op; 1216ce63c4c1SBarry Smith #if (defined(PETSC_USE_COMPLEX) && !defined(PETSC_HAVE_MPI_C_DOUBLE_COMPLEX)) || defined(PETSC_USE_REAL___FLOAT128) 12177087cfbeSBarry Smith extern MPI_Op MPIU_SUM; 1218d382aafbSBarry Smith #else 1219d382aafbSBarry Smith #define MPIU_SUM MPI_SUM 1220d382aafbSBarry Smith #endif 1221ce63c4c1SBarry Smith #if defined(PETSC_USE_REAL___FLOAT128) 1222d9822059SBarry Smith extern MPI_Op MPIU_MAX; 1223d9822059SBarry Smith extern MPI_Op MPIU_MIN; 1224d9822059SBarry Smith #else 1225d9822059SBarry Smith #define MPIU_MAX MPI_MAX 1226d9822059SBarry Smith #define MPIU_MIN MPI_MIN 1227d9822059SBarry Smith #endif 12287087cfbeSBarry Smith extern PetscErrorCode PetscMaxSum(MPI_Comm,const PetscInt[],PetscInt*,PetscInt*); 1229d382aafbSBarry Smith 1230eb3f98d2SBarry Smith extern PetscErrorCode MPILong_Send(void*,PetscInt,MPI_Datatype,PetscMPIInt,PetscMPIInt,MPI_Comm); 1231eb3f98d2SBarry Smith extern PetscErrorCode MPILong_Recv(void*,PetscInt,MPI_Datatype,PetscMPIInt,PetscMPIInt,MPI_Comm); 1232eb3f98d2SBarry Smith 1233d382aafbSBarry Smith /*S 1234d382aafbSBarry Smith PetscObject - any PETSc object, PetscViewer, Mat, Vec, KSP etc 1235d382aafbSBarry Smith 1236d382aafbSBarry Smith Level: beginner 1237d382aafbSBarry Smith 1238d382aafbSBarry Smith Note: This is the base class from which all objects appear. 1239d382aafbSBarry Smith 12401890ba74SBarry Smith .seealso: PetscObjectDestroy(), PetscObjectView(), PetscObjectGetName(), PetscObjectSetName(), PetscObjectReference(), PetscObjectDereferenc() 1241d382aafbSBarry Smith S*/ 1242d382aafbSBarry Smith typedef struct _p_PetscObject* PetscObject; 1243d382aafbSBarry Smith 1244d382aafbSBarry Smith /*S 1245d382aafbSBarry Smith PetscFList - Linked list of functions, possibly stored in dynamic libraries, accessed 1246d382aafbSBarry Smith by string name 1247d382aafbSBarry Smith 1248d382aafbSBarry Smith Level: advanced 1249d382aafbSBarry Smith 1250d382aafbSBarry Smith .seealso: PetscFListAdd(), PetscFListDestroy() 1251d382aafbSBarry Smith S*/ 1252d382aafbSBarry Smith typedef struct _n_PetscFList *PetscFList; 1253d382aafbSBarry Smith 1254d382aafbSBarry Smith /*E 1255d382aafbSBarry Smith PetscFileMode - Access mode for a file. 1256d382aafbSBarry Smith 1257d382aafbSBarry Smith Level: beginner 1258d382aafbSBarry Smith 1259d382aafbSBarry Smith FILE_MODE_READ - open a file at its beginning for reading 1260d382aafbSBarry Smith 1261d382aafbSBarry Smith FILE_MODE_WRITE - open a file at its beginning for writing (will create if the file does not exist) 1262d382aafbSBarry Smith 1263d382aafbSBarry Smith FILE_MODE_APPEND - open a file at end for writing 1264d382aafbSBarry Smith 1265d382aafbSBarry Smith FILE_MODE_UPDATE - open a file for updating, meaning for reading and writing 1266d382aafbSBarry Smith 1267d382aafbSBarry Smith FILE_MODE_APPEND_UPDATE - open a file for updating, meaning for reading and writing, at the end 1268d382aafbSBarry Smith 1269d382aafbSBarry Smith .seealso: PetscViewerFileSetMode() 1270d382aafbSBarry Smith E*/ 1271d382aafbSBarry Smith typedef enum {FILE_MODE_READ, FILE_MODE_WRITE, FILE_MODE_APPEND, FILE_MODE_UPDATE, FILE_MODE_APPEND_UPDATE} PetscFileMode; 1272d382aafbSBarry Smith 1273d382aafbSBarry Smith #include "petscviewer.h" 1274d382aafbSBarry Smith #include "petscoptions.h" 1275d382aafbSBarry Smith 12760700a824SBarry Smith #define PETSC_SMALLEST_CLASSID 1211211 12777087cfbeSBarry Smith extern PetscClassId PETSC_LARGEST_CLASSID; 12787087cfbeSBarry Smith extern PetscClassId PETSC_OBJECT_CLASSID; 12797087cfbeSBarry Smith extern PetscErrorCode PetscClassIdRegister(const char[],PetscClassId *); 1280d382aafbSBarry Smith 1281d382aafbSBarry Smith /* 1282d382aafbSBarry Smith Routines that get memory usage information from the OS 1283d382aafbSBarry Smith */ 12847087cfbeSBarry Smith extern PetscErrorCode PetscMemoryGetCurrentUsage(PetscLogDouble *); 12857087cfbeSBarry Smith extern PetscErrorCode PetscMemoryGetMaximumUsage(PetscLogDouble *); 12867087cfbeSBarry Smith extern PetscErrorCode PetscMemorySetGetMaximumUsage(void); 12877087cfbeSBarry Smith extern PetscErrorCode PetscMemoryShowUsage(PetscViewer,const char[]); 1288d382aafbSBarry Smith 12897087cfbeSBarry Smith extern PetscErrorCode PetscInfoAllow(PetscBool ,const char []); 12907087cfbeSBarry Smith extern PetscErrorCode PetscGetTime(PetscLogDouble*); 12917087cfbeSBarry Smith extern PetscErrorCode PetscGetCPUTime(PetscLogDouble*); 12927087cfbeSBarry Smith extern PetscErrorCode PetscSleep(PetscReal); 1293d382aafbSBarry Smith 1294d382aafbSBarry Smith /* 1295d382aafbSBarry Smith Initialization of PETSc 1296d382aafbSBarry Smith */ 12977087cfbeSBarry Smith extern PetscErrorCode PetscInitialize(int*,char***,const char[],const char[]); 1298d382aafbSBarry Smith PetscPolymorphicSubroutine(PetscInitialize,(int *argc,char ***args),(argc,args,PETSC_NULL,PETSC_NULL)) 12997087cfbeSBarry Smith extern PetscErrorCode PetscInitializeNoArguments(void); 13007087cfbeSBarry Smith extern PetscErrorCode PetscInitialized(PetscBool *); 13017087cfbeSBarry Smith extern PetscErrorCode PetscFinalized(PetscBool *); 13027087cfbeSBarry Smith extern PetscErrorCode PetscFinalize(void); 130309573ac7SBarry Smith extern PetscErrorCode PetscInitializeFortran(void); 13047087cfbeSBarry Smith extern PetscErrorCode PetscGetArgs(int*,char ***); 13057087cfbeSBarry Smith extern PetscErrorCode PetscGetArguments(char ***); 13067087cfbeSBarry Smith extern PetscErrorCode PetscFreeArguments(char **); 1307d382aafbSBarry Smith 13087087cfbeSBarry Smith extern PetscErrorCode PetscEnd(void); 13097087cfbeSBarry Smith extern PetscErrorCode PetscSysInitializePackage(const char[]); 1310d382aafbSBarry Smith 1311d382aafbSBarry Smith extern MPI_Comm PETSC_COMM_LOCAL_WORLD; 131285afcc9aSBarry Smith extern PetscErrorCode PetscHMPIMerge(PetscMPIInt,PetscErrorCode (*)(void*),void*); 131385afcc9aSBarry Smith extern PetscErrorCode PetscHMPISpawn(PetscMPIInt); 131485afcc9aSBarry Smith extern PetscErrorCode PetscHMPIFinalize(void); 131585afcc9aSBarry Smith extern PetscErrorCode PetscHMPIRun(MPI_Comm,PetscErrorCode (*)(MPI_Comm,void *),void*); 131685afcc9aSBarry Smith extern PetscErrorCode PetscHMPIRunCtx(MPI_Comm,PetscErrorCode (*)(MPI_Comm,void*,void *),void*); 131785afcc9aSBarry Smith extern PetscErrorCode PetscHMPIFree(MPI_Comm,void*); 131885afcc9aSBarry Smith extern PetscErrorCode PetscHMPIMalloc(MPI_Comm,size_t,void**); 1319d382aafbSBarry Smith 13207087cfbeSBarry Smith extern PetscErrorCode PetscPythonInitialize(const char[],const char[]); 13217087cfbeSBarry Smith extern PetscErrorCode PetscPythonFinalize(void); 13227087cfbeSBarry Smith extern PetscErrorCode PetscPythonPrintError(void); 13235180491cSLisandro Dalcin extern PetscErrorCode PetscPythonMonitorSet(PetscObject,const char[]); 1324d382aafbSBarry Smith 1325d382aafbSBarry Smith /* 1326d382aafbSBarry Smith These are so that in extern C code we can caste function pointers to non-extern C 1327d382aafbSBarry Smith function pointers. Since the regular C++ code expects its function pointers to be 1328d382aafbSBarry Smith C++. 1329d382aafbSBarry Smith */ 1330d382aafbSBarry Smith typedef void (**PetscVoidStarFunction)(void); 1331d382aafbSBarry Smith typedef void (*PetscVoidFunction)(void); 1332d382aafbSBarry Smith typedef PetscErrorCode (*PetscErrorCodeFunction)(void); 1333d382aafbSBarry Smith 1334d382aafbSBarry Smith /* 1335d382aafbSBarry Smith PetscTryMethod - Queries an object for a method, if it exists then calls it. 1336d382aafbSBarry Smith These are intended to be used only inside PETSc functions. 1337503cfb0cSBarry Smith 1338503cfb0cSBarry Smith Level: developer 1339503cfb0cSBarry Smith 1340503cfb0cSBarry Smith .seealso: PetscUseMethod() 1341d382aafbSBarry Smith */ 1342d382aafbSBarry Smith #define PetscTryMethod(obj,A,B,C) \ 1343d382aafbSBarry Smith 0;{ PetscErrorCode (*f)B, __ierr; \ 1344d382aafbSBarry Smith __ierr = PetscObjectQueryFunction((PetscObject)obj,A,(PetscVoidStarFunction)&f);CHKERRQ(__ierr); \ 1345d382aafbSBarry Smith if (f) {__ierr = (*f)C;CHKERRQ(__ierr);}\ 1346d382aafbSBarry Smith } 1347503cfb0cSBarry Smith 1348503cfb0cSBarry Smith /* 1349503cfb0cSBarry Smith PetscUseMethod - Queries an object for a method, if it exists then calls it, otherwise generates an error. 1350503cfb0cSBarry Smith These are intended to be used only inside PETSc functions. 1351503cfb0cSBarry Smith 1352503cfb0cSBarry Smith Level: developer 1353503cfb0cSBarry Smith 1354503cfb0cSBarry Smith .seealso: PetscTryMethod() 1355503cfb0cSBarry Smith */ 1356d382aafbSBarry Smith #define PetscUseMethod(obj,A,B,C) \ 1357d382aafbSBarry Smith 0;{ PetscErrorCode (*f)B, __ierr; \ 1358d382aafbSBarry Smith __ierr = PetscObjectQueryFunction((PetscObject)obj,A,(PetscVoidStarFunction)&f);CHKERRQ(__ierr); \ 1359d382aafbSBarry Smith if (f) {__ierr = (*f)C;CHKERRQ(__ierr);}\ 1360703c66c1SJed Brown else SETERRQ1(((PetscObject)obj)->comm,PETSC_ERR_SUP,"Cannot locate function %s in object",A); \ 1361d382aafbSBarry Smith } 1362503cfb0cSBarry Smith 1363d382aafbSBarry Smith /* 1364d382aafbSBarry Smith Functions that can act on any PETSc object. 1365d382aafbSBarry Smith */ 1366fcfd50ebSBarry Smith extern PetscErrorCode PetscObjectDestroy(PetscObject*); 13677087cfbeSBarry Smith extern PetscErrorCode PetscObjectGetComm(PetscObject,MPI_Comm *); 13687087cfbeSBarry Smith extern PetscErrorCode PetscObjectGetClassId(PetscObject,PetscClassId *); 1369609db0e0SLisandro Dalcin extern PetscErrorCode PetscObjectGetClassName(PetscObject,const char *[]); 13707087cfbeSBarry Smith extern PetscErrorCode PetscObjectSetType(PetscObject,const char []); 13717087cfbeSBarry Smith extern PetscErrorCode PetscObjectSetPrecision(PetscObject,PetscPrecision); 13727087cfbeSBarry Smith extern PetscErrorCode PetscObjectGetType(PetscObject,const char *[]); 13737087cfbeSBarry Smith extern PetscErrorCode PetscObjectSetName(PetscObject,const char[]); 13747087cfbeSBarry Smith extern PetscErrorCode PetscObjectGetName(PetscObject,const char*[]); 13757087cfbeSBarry Smith extern PetscErrorCode PetscObjectPrintClassNamePrefixType(PetscObject,PetscViewer,const char[]); 13767087cfbeSBarry Smith extern PetscErrorCode PetscObjectSetTabLevel(PetscObject,PetscInt); 13777087cfbeSBarry Smith extern PetscErrorCode PetscObjectGetTabLevel(PetscObject,PetscInt*); 13787087cfbeSBarry Smith extern PetscErrorCode PetscObjectIncrementTabLevel(PetscObject,PetscObject,PetscInt); 13797087cfbeSBarry Smith extern PetscErrorCode PetscObjectReference(PetscObject); 13807087cfbeSBarry Smith extern PetscErrorCode PetscObjectGetReference(PetscObject,PetscInt*); 13817087cfbeSBarry Smith extern PetscErrorCode PetscObjectDereference(PetscObject); 13827087cfbeSBarry Smith extern PetscErrorCode PetscObjectGetNewTag(PetscObject,PetscMPIInt *); 13837087cfbeSBarry Smith extern PetscErrorCode PetscObjectView(PetscObject,PetscViewer); 13847087cfbeSBarry Smith extern PetscErrorCode PetscObjectCompose(PetscObject,const char[],PetscObject); 13856ba4bc90SBarry Smith extern PetscErrorCode PetscObjectRemoveReference(PetscObject,const char[]); 13867087cfbeSBarry Smith extern PetscErrorCode PetscObjectQuery(PetscObject,const char[],PetscObject *); 13877087cfbeSBarry Smith extern PetscErrorCode PetscObjectComposeFunction(PetscObject,const char[],const char[],void (*)(void)); 13887087cfbeSBarry Smith extern PetscErrorCode PetscObjectSetFromOptions(PetscObject); 13897087cfbeSBarry Smith extern PetscErrorCode PetscObjectSetUp(PetscObject); 13907087cfbeSBarry Smith extern PetscErrorCode PetscCommGetNewTag(MPI_Comm,PetscMPIInt *); 13917087cfbeSBarry Smith extern PetscErrorCode PetscObjectAddOptionsHandler(PetscObject,PetscErrorCode (*)(PetscObject,void*),PetscErrorCode (*)(PetscObject,void*),void*); 13927087cfbeSBarry Smith extern PetscErrorCode PetscObjectProcessOptionsHandlers(PetscObject); 13937087cfbeSBarry Smith extern PetscErrorCode PetscObjectDestroyOptionsHandlers(PetscObject); 1394d382aafbSBarry Smith 1395d382aafbSBarry Smith /*MC 1396d382aafbSBarry Smith PetscObjectComposeFunctionDynamic - Associates a function with a given PETSc object. 1397d382aafbSBarry Smith 1398eca87e8dSBarry Smith Synopsis: 1399eca87e8dSBarry Smith PetscErrorCode PetscObjectComposeFunctionDynamic(PetscObject obj,const char name[],const char fname[],void *ptr) 1400eca87e8dSBarry Smith 1401ad4df100SBarry Smith Logically Collective on PetscObject 1402d382aafbSBarry Smith 1403d382aafbSBarry Smith Input Parameters: 1404d382aafbSBarry Smith + obj - the PETSc object; this must be cast with a (PetscObject), for example, 1405d382aafbSBarry Smith PetscObjectCompose((PetscObject)mat,...); 1406d382aafbSBarry Smith . name - name associated with the child function 1407d382aafbSBarry Smith . fname - name of the function 1408d382aafbSBarry Smith - ptr - function pointer (or PETSC_NULL if using dynamic libraries) 1409d382aafbSBarry Smith 1410d382aafbSBarry Smith Level: advanced 1411d382aafbSBarry Smith 1412d382aafbSBarry Smith 1413d382aafbSBarry Smith Notes: 1414d382aafbSBarry Smith To remove a registered routine, pass in a PETSC_NULL rname and fnc(). 1415d382aafbSBarry Smith 1416d382aafbSBarry Smith PetscObjectComposeFunctionDynamic() can be used with any PETSc object (such as 1417d382aafbSBarry Smith Mat, Vec, KSP, SNES, etc.) or any user-provided object. 1418d382aafbSBarry Smith 1419d382aafbSBarry Smith The composed function must be wrapped in a EXTERN_C_BEGIN/END for this to 142020de1f94SBarry Smith work in C++/complex with dynamic link libraries (./configure options --with-shared-libraries --with-dynamic-loading) 1421d382aafbSBarry Smith enabled. 1422d382aafbSBarry Smith 1423d382aafbSBarry Smith Concepts: objects^composing functions 1424d382aafbSBarry Smith Concepts: composing functions 1425d382aafbSBarry Smith Concepts: functions^querying 1426d382aafbSBarry Smith Concepts: objects^querying 1427d382aafbSBarry Smith Concepts: querying objects 1428d382aafbSBarry Smith 1429d382aafbSBarry Smith .seealso: PetscObjectQueryFunction() 1430d382aafbSBarry Smith M*/ 1431d382aafbSBarry Smith #if defined(PETSC_USE_DYNAMIC_LIBRARIES) 1432d382aafbSBarry Smith #define PetscObjectComposeFunctionDynamic(a,b,c,d) PetscObjectComposeFunction(a,b,c,0) 1433d382aafbSBarry Smith #else 1434d382aafbSBarry Smith #define PetscObjectComposeFunctionDynamic(a,b,c,d) PetscObjectComposeFunction(a,b,c,(PetscVoidFunction)(d)) 1435d382aafbSBarry Smith #endif 1436d382aafbSBarry Smith 14377087cfbeSBarry Smith extern PetscErrorCode PetscObjectQueryFunction(PetscObject,const char[],void (**)(void)); 14387087cfbeSBarry Smith extern PetscErrorCode PetscObjectSetOptionsPrefix(PetscObject,const char[]); 14397087cfbeSBarry Smith extern PetscErrorCode PetscObjectAppendOptionsPrefix(PetscObject,const char[]); 14407087cfbeSBarry Smith extern PetscErrorCode PetscObjectPrependOptionsPrefix(PetscObject,const char[]); 14417087cfbeSBarry Smith extern PetscErrorCode PetscObjectGetOptionsPrefix(PetscObject,const char*[]); 14427087cfbeSBarry Smith extern PetscErrorCode PetscObjectAMSPublish(PetscObject); 14437087cfbeSBarry Smith extern PetscErrorCode PetscObjectUnPublish(PetscObject); 14447087cfbeSBarry Smith extern PetscErrorCode PetscObjectChangeTypeName(PetscObject,const char[]); 14457087cfbeSBarry Smith extern PetscErrorCode PetscObjectRegisterDestroy(PetscObject); 14467087cfbeSBarry Smith extern PetscErrorCode PetscObjectRegisterDestroyAll(void); 14477087cfbeSBarry Smith extern PetscErrorCode PetscObjectName(PetscObject); 14487087cfbeSBarry Smith extern PetscErrorCode PetscTypeCompare(PetscObject,const char[],PetscBool *); 14492b12f010SJed Brown extern PetscErrorCode PetscTypeCompareAny(PetscObject,PetscBool*,const char[],...); 14507087cfbeSBarry Smith extern PetscErrorCode PetscRegisterFinalize(PetscErrorCode (*)(void)); 14517087cfbeSBarry Smith extern PetscErrorCode PetscRegisterFinalizeAll(void); 1452d382aafbSBarry Smith 1453d382aafbSBarry Smith /* 1454d382aafbSBarry Smith Defines PETSc error handling. 1455d382aafbSBarry Smith */ 1456d382aafbSBarry Smith #include "petscerror.h" 1457d382aafbSBarry Smith 1458d382aafbSBarry Smith /*S 1459503cfb0cSBarry Smith PetscOList - Linked list of PETSc objects, each accessable by string name 1460d382aafbSBarry Smith 14611d0fab5eSBarry Smith Level: developer 1462d382aafbSBarry Smith 14631d0fab5eSBarry Smith Notes: Used by PetscObjectCompose() and PetscObjectQuery() 14641d0fab5eSBarry Smith 14651d0fab5eSBarry Smith .seealso: PetscOListAdd(), PetscOListDestroy(), PetscOListFind(), PetscObjectCompose(), PetscObjectQuery() 1466d382aafbSBarry Smith S*/ 1467d382aafbSBarry Smith typedef struct _n_PetscOList *PetscOList; 1468d382aafbSBarry Smith 1469fcfd50ebSBarry Smith extern PetscErrorCode PetscOListDestroy(PetscOList*); 14707087cfbeSBarry Smith extern PetscErrorCode PetscOListFind(PetscOList,const char[],PetscObject*); 1471bfec8eecSBarry Smith extern PetscErrorCode PetscOListReverseFind(PetscOList,PetscObject,char**,PetscBool*); 14727087cfbeSBarry Smith extern PetscErrorCode PetscOListAdd(PetscOList *,const char[],PetscObject); 14736ba4bc90SBarry Smith extern PetscErrorCode PetscOListRemoveReference(PetscOList *,const char[]); 14747087cfbeSBarry Smith extern PetscErrorCode PetscOListDuplicate(PetscOList,PetscOList *); 1475d382aafbSBarry Smith 1476d382aafbSBarry Smith /* 1477503cfb0cSBarry Smith Dynamic library lists. Lists of names of routines in objects or in dynamic 1478d382aafbSBarry Smith link libraries that will be loaded as needed. 1479d382aafbSBarry Smith */ 14807087cfbeSBarry Smith extern PetscErrorCode PetscFListAdd(PetscFList*,const char[],const char[],void (*)(void)); 14817087cfbeSBarry Smith extern PetscErrorCode PetscFListDestroy(PetscFList*); 14824b91b6eaSBarry Smith extern PetscErrorCode PetscFListFind(PetscFList,MPI_Comm,const char[],PetscBool,void (**)(void)); 14837087cfbeSBarry Smith extern PetscErrorCode PetscFListPrintTypes(MPI_Comm,FILE*,const char[],const char[],const char[],const char[],PetscFList,const char[]); 1484d382aafbSBarry Smith #if defined(PETSC_USE_DYNAMIC_LIBRARIES) 1485d382aafbSBarry Smith #define PetscFListAddDynamic(a,b,p,c) PetscFListAdd(a,b,p,0) 1486d382aafbSBarry Smith #else 1487d382aafbSBarry Smith #define PetscFListAddDynamic(a,b,p,c) PetscFListAdd(a,b,p,(void (*)(void))c) 1488d382aafbSBarry Smith #endif 14897087cfbeSBarry Smith extern PetscErrorCode PetscFListDuplicate(PetscFList,PetscFList *); 14907087cfbeSBarry Smith extern PetscErrorCode PetscFListView(PetscFList,PetscViewer); 14917087cfbeSBarry Smith extern PetscErrorCode PetscFListConcat(const char [],const char [],char []); 14927087cfbeSBarry Smith extern PetscErrorCode PetscFListGet(PetscFList,char ***,int*); 1493d382aafbSBarry Smith 1494d382aafbSBarry Smith /*S 1495d382aafbSBarry Smith PetscDLLibrary - Linked list of dynamics libraries to search for functions 1496d382aafbSBarry Smith 1497d382aafbSBarry Smith Level: advanced 1498d382aafbSBarry Smith 149920de1f94SBarry Smith --with-shared-libraries --with-dynamic-loading must be used with ./configure to use dynamic libraries 1500d382aafbSBarry Smith 1501d382aafbSBarry Smith .seealso: PetscDLLibraryOpen() 1502d382aafbSBarry Smith S*/ 1503d382aafbSBarry Smith typedef struct _n_PetscDLLibrary *PetscDLLibrary; 15047087cfbeSBarry Smith extern PetscDLLibrary DLLibrariesLoaded; 15057087cfbeSBarry Smith extern PetscErrorCode PetscDLLibraryAppend(MPI_Comm,PetscDLLibrary *,const char[]); 15067087cfbeSBarry Smith extern PetscErrorCode PetscDLLibraryPrepend(MPI_Comm,PetscDLLibrary *,const char[]); 15077087cfbeSBarry Smith extern PetscErrorCode PetscDLLibrarySym(MPI_Comm,PetscDLLibrary *,const char[],const char[],void **); 15087087cfbeSBarry Smith extern PetscErrorCode PetscDLLibraryPrintPath(PetscDLLibrary); 15097087cfbeSBarry Smith extern PetscErrorCode PetscDLLibraryRetrieve(MPI_Comm,const char[],char *,size_t,PetscBool *); 15107087cfbeSBarry Smith extern PetscErrorCode PetscDLLibraryOpen(MPI_Comm,const char[],PetscDLLibrary *); 15117087cfbeSBarry Smith extern PetscErrorCode PetscDLLibraryClose(PetscDLLibrary); 15127087cfbeSBarry Smith extern PetscErrorCode PetscDLLibraryCCAAppend(MPI_Comm,PetscDLLibrary *,const char[]); 1513d382aafbSBarry Smith 1514d382aafbSBarry Smith /* 151505846914SDmitry Karpeev PetscFwk support. Needs to be documented. 151605846914SDmitry Karpeev Logically it is an extension of PetscDLLXXX, PetscObjectCompose, etc. 151705846914SDmitry Karpeev */ 151805846914SDmitry Karpeev #include "petscfwk.h" 151905846914SDmitry Karpeev 152005846914SDmitry Karpeev /* 1521d382aafbSBarry Smith Useful utility routines 1522d382aafbSBarry Smith */ 15237087cfbeSBarry Smith extern PetscErrorCode PetscSplitOwnership(MPI_Comm,PetscInt*,PetscInt*); 15247087cfbeSBarry Smith extern PetscErrorCode PetscSplitOwnershipBlock(MPI_Comm,PetscInt,PetscInt*,PetscInt*); 15257087cfbeSBarry Smith extern PetscErrorCode PetscSequentialPhaseBegin(MPI_Comm,PetscMPIInt); 1526d382aafbSBarry Smith PetscPolymorphicSubroutine(PetscSequentialPhaseBegin,(MPI_Comm comm),(comm,1)) 1527d382aafbSBarry Smith PetscPolymorphicSubroutine(PetscSequentialPhaseBegin,(void),(PETSC_COMM_WORLD,1)) 15287087cfbeSBarry Smith extern PetscErrorCode PetscSequentialPhaseEnd(MPI_Comm,PetscMPIInt); 1529d382aafbSBarry Smith PetscPolymorphicSubroutine(PetscSequentialPhaseEnd,(MPI_Comm comm),(comm,1)) 1530d382aafbSBarry Smith PetscPolymorphicSubroutine(PetscSequentialPhaseEnd,(void),(PETSC_COMM_WORLD,1)) 15317087cfbeSBarry Smith extern PetscErrorCode PetscBarrier(PetscObject); 15327087cfbeSBarry Smith extern PetscErrorCode PetscMPIDump(FILE*); 1533d382aafbSBarry Smith 1534503cfb0cSBarry Smith /* 1535ace3abfcSBarry Smith PetscNot - negates a logical type value and returns result as a PetscBool 1536503cfb0cSBarry Smith 1537503cfb0cSBarry Smith Notes: This is useful in cases like 1538503cfb0cSBarry Smith $ int *a; 1539ace3abfcSBarry Smith $ PetscBool flag = PetscNot(a) 1540ace3abfcSBarry Smith where !a does not return a PetscBool because we cannot provide a cast from int to PetscBool in C. 1541503cfb0cSBarry Smith */ 1542d382aafbSBarry Smith #define PetscNot(a) ((a) ? PETSC_FALSE : PETSC_TRUE) 1543503cfb0cSBarry Smith 1544d382aafbSBarry Smith /* 1545d382aafbSBarry Smith Defines basic graphics available from PETSc. 1546d382aafbSBarry Smith */ 1547d382aafbSBarry Smith #include "petscdraw.h" 1548d382aafbSBarry Smith 1549d382aafbSBarry Smith /* 1550d382aafbSBarry Smith Defines the base data structures for all PETSc objects 1551d382aafbSBarry Smith */ 1552d382aafbSBarry Smith #include "private/petscimpl.h" 1553503cfb0cSBarry Smith 1554238ccf28SShri Abhyankar 1555d382aafbSBarry Smith /*MC 1556d382aafbSBarry Smith PetscErrorPrintf - Prints error messages. 1557d382aafbSBarry Smith 1558d382aafbSBarry Smith Synopsis: 1559d382aafbSBarry Smith PetscErrorCode (*PetscErrorPrintf)(const char format[],...); 1560d382aafbSBarry Smith 1561eca87e8dSBarry Smith Not Collective 1562eca87e8dSBarry Smith 1563d382aafbSBarry Smith Input Parameters: 1564d382aafbSBarry Smith . format - the usual printf() format string 1565d382aafbSBarry Smith 1566d382aafbSBarry Smith Options Database Keys: 1567d382aafbSBarry Smith + -error_output_stdout - cause error messages to be printed to stdout instead of the 1568d382aafbSBarry Smith (default) stderr 1569d382aafbSBarry Smith - -error_output_none to turn off all printing of error messages (does not change the way the 1570d382aafbSBarry Smith error is handled.) 1571d382aafbSBarry Smith 1572d382aafbSBarry Smith Notes: Use 1573d382aafbSBarry Smith $ PetscErrorPrintf = PetscErrorPrintfNone; to turn off all printing of error messages (does not change the way the 1574d382aafbSBarry Smith $ error is handled.) and 1575d382aafbSBarry Smith $ PetscErrorPrintf = PetscErrorPrintfDefault; to turn it back on 1576c9a19010SBarry Smith $ of you can use your own function 1577d382aafbSBarry Smith 1578d382aafbSBarry Smith Use 1579d382aafbSBarry Smith PETSC_STDERR = FILE* obtained from a file open etc. to have stderr printed to the file. 1580d382aafbSBarry Smith PETSC_STDOUT = FILE* obtained from a file open etc. to have stdout printed to the file. 1581d382aafbSBarry Smith 1582d382aafbSBarry Smith Use 1583d382aafbSBarry Smith PetscPushErrorHandler() to provide your own error handler that determines what kind of messages to print 1584d382aafbSBarry Smith 1585d382aafbSBarry Smith Level: developer 1586d382aafbSBarry Smith 1587d382aafbSBarry Smith Fortran Note: 1588d382aafbSBarry Smith This routine is not supported in Fortran. 1589d382aafbSBarry Smith 1590d382aafbSBarry Smith Concepts: error messages^printing 1591d382aafbSBarry Smith Concepts: printing^error messages 1592d382aafbSBarry Smith 1593c9a19010SBarry Smith .seealso: PetscFPrintf(), PetscSynchronizedPrintf(), PetscHelpPrintf(), PetscPrintf(), PetscErrorHandlerPush(), PetscVFPrintf(), PetscHelpPrintf() 1594d382aafbSBarry Smith M*/ 15957087cfbeSBarry Smith extern PetscErrorCode (*PetscErrorPrintf)(const char[],...); 1596d382aafbSBarry Smith 1597d382aafbSBarry Smith /*MC 1598d382aafbSBarry Smith PetscHelpPrintf - Prints help messages. 1599d382aafbSBarry Smith 1600d382aafbSBarry Smith Synopsis: 1601d382aafbSBarry Smith PetscErrorCode (*PetscHelpPrintf)(const char format[],...); 1602d382aafbSBarry Smith 1603eca87e8dSBarry Smith Not Collective 1604eca87e8dSBarry Smith 1605d382aafbSBarry Smith Input Parameters: 1606d382aafbSBarry Smith . format - the usual printf() format string 1607d382aafbSBarry Smith 1608d382aafbSBarry Smith Level: developer 1609d382aafbSBarry Smith 1610d382aafbSBarry Smith Fortran Note: 1611d382aafbSBarry Smith This routine is not supported in Fortran. 1612d382aafbSBarry Smith 1613d382aafbSBarry Smith Concepts: help messages^printing 1614d382aafbSBarry Smith Concepts: printing^help messages 1615d382aafbSBarry Smith 1616d382aafbSBarry Smith .seealso: PetscFPrintf(), PetscSynchronizedPrintf(), PetscErrorPrintf() 1617d382aafbSBarry Smith M*/ 16187087cfbeSBarry Smith extern PetscErrorCode (*PetscHelpPrintf)(MPI_Comm,const char[],...); 1619d382aafbSBarry Smith 1620fcfd50ebSBarry Smith /* 1621fcfd50ebSBarry Smith Defines PETSc profiling. 1622fcfd50ebSBarry Smith */ 1623fcfd50ebSBarry Smith #include "petsclog.h" 1624fcfd50ebSBarry Smith 1625fcfd50ebSBarry Smith /* 1626fcfd50ebSBarry Smith For locking, unlocking and destroying AMS memories associated with PETSc objects. ams.h is included in petscviewer.h 1627fcfd50ebSBarry Smith */ 1628fcfd50ebSBarry Smith #if defined(PETSC_HAVE_AMS) 1629fcfd50ebSBarry Smith extern PetscBool PetscAMSPublishAll; 1630fcfd50ebSBarry Smith #define PetscObjectTakeAccess(obj) ((((PetscObject)(obj))->amem == -1) ? 0 : AMS_Memory_take_access(((PetscObject)(obj))->amem)) 1631fcfd50ebSBarry Smith #define PetscObjectGrantAccess(obj) ((((PetscObject)(obj))->amem == -1) ? 0 : AMS_Memory_grant_access(((PetscObject)(obj))->amem)) 1632fcfd50ebSBarry Smith #define PetscObjectDepublish(obj) ((((PetscObject)(obj))->amem == -1) ? 0 : AMS_Memory_destroy(((PetscObject)(obj))->amem));((PetscObject)(obj))->amem = -1; 1633fcfd50ebSBarry Smith #else 1634fcfd50ebSBarry Smith #define PetscObjectTakeAccess(obj) 0 1635fcfd50ebSBarry Smith #define PetscObjectGrantAccess(obj) 0 1636fcfd50ebSBarry Smith #define PetscObjectDepublish(obj) 0 1637fcfd50ebSBarry Smith #endif 1638fcfd50ebSBarry Smith 1639fcfd50ebSBarry Smith /* 1640fcfd50ebSBarry Smith Simple PETSc parallel IO for ASCII printing 1641fcfd50ebSBarry Smith */ 1642fcfd50ebSBarry Smith extern PetscErrorCode PetscFixFilename(const char[],char[]); 1643fcfd50ebSBarry Smith extern PetscErrorCode PetscFOpen(MPI_Comm,const char[],const char[],FILE**); 1644fcfd50ebSBarry Smith extern PetscErrorCode PetscFClose(MPI_Comm,FILE*); 1645fcfd50ebSBarry Smith extern PetscErrorCode PetscFPrintf(MPI_Comm,FILE*,const char[],...); 1646fcfd50ebSBarry Smith extern PetscErrorCode PetscPrintf(MPI_Comm,const char[],...); 1647fcfd50ebSBarry Smith extern PetscErrorCode PetscSNPrintf(char*,size_t,const char [],...); 1648257d2499SJed Brown extern PetscErrorCode PetscSNPrintfCount(char*,size_t,const char [],size_t*,...); 1649fcfd50ebSBarry Smith 1650fcfd50ebSBarry Smith 1651fcfd50ebSBarry Smith 1652fcfd50ebSBarry Smith /* These are used internally by PETSc ASCII IO routines*/ 1653fcfd50ebSBarry Smith #include <stdarg.h> 1654fcfd50ebSBarry Smith extern PetscErrorCode PetscVSNPrintf(char*,size_t,const char[],size_t*,va_list); 1655fcfd50ebSBarry Smith extern PetscErrorCode (*PetscVFPrintf)(FILE*,const char[],va_list); 1656fcfd50ebSBarry Smith extern PetscErrorCode PetscVFPrintfDefault(FILE*,const char[],va_list); 1657fcfd50ebSBarry Smith 1658fcfd50ebSBarry Smith #if defined(PETSC_HAVE_MATLAB_ENGINE) 1659fcfd50ebSBarry Smith extern PetscErrorCode PetscVFPrintf_Matlab(FILE*,const char[],va_list); 1660fcfd50ebSBarry Smith #endif 1661fcfd50ebSBarry Smith 166209573ac7SBarry Smith extern PetscErrorCode PetscErrorPrintfDefault(const char [],...); 166309573ac7SBarry Smith extern PetscErrorCode PetscErrorPrintfNone(const char [],...); 166409573ac7SBarry Smith extern PetscErrorCode PetscHelpPrintfDefault(MPI_Comm,const char [],...); 1665d382aafbSBarry Smith 1666d382aafbSBarry Smith #if defined(PETSC_HAVE_POPEN) 16677087cfbeSBarry Smith extern PetscErrorCode PetscPOpen(MPI_Comm,const char[],const char[],const char[],FILE **); 16687087cfbeSBarry Smith extern PetscErrorCode PetscPClose(MPI_Comm,FILE*); 1669d382aafbSBarry Smith #endif 1670d382aafbSBarry Smith 16717087cfbeSBarry Smith extern PetscErrorCode PetscSynchronizedPrintf(MPI_Comm,const char[],...); 16727087cfbeSBarry Smith extern PetscErrorCode PetscSynchronizedFPrintf(MPI_Comm,FILE*,const char[],...); 16737087cfbeSBarry Smith extern PetscErrorCode PetscSynchronizedFlush(MPI_Comm); 16747087cfbeSBarry Smith extern PetscErrorCode PetscSynchronizedFGets(MPI_Comm,FILE*,size_t,char[]); 16757087cfbeSBarry Smith extern PetscErrorCode PetscStartMatlab(MPI_Comm,const char[],const char[],FILE**); 16767087cfbeSBarry Smith extern PetscErrorCode PetscStartJava(MPI_Comm,const char[],const char[],FILE**); 16777087cfbeSBarry Smith extern PetscErrorCode PetscGetPetscDir(const char*[]); 1678d382aafbSBarry Smith 16797087cfbeSBarry Smith extern PetscErrorCode PetscPopUpSelect(MPI_Comm,const char*,const char*,int,const char**,int*); 1680d382aafbSBarry Smith 1681d382aafbSBarry Smith /*S 1682d382aafbSBarry Smith PetscContainer - Simple PETSc object that contains a pointer to any required data 1683d382aafbSBarry Smith 1684d382aafbSBarry Smith Level: advanced 1685d382aafbSBarry Smith 1686d382aafbSBarry Smith .seealso: PetscObject, PetscContainerCreate() 1687d382aafbSBarry Smith S*/ 16887087cfbeSBarry Smith extern PetscClassId PETSC_CONTAINER_CLASSID; 1689d382aafbSBarry Smith typedef struct _p_PetscContainer* PetscContainer; 16907087cfbeSBarry Smith extern PetscErrorCode PetscContainerGetPointer(PetscContainer,void **); 16917087cfbeSBarry Smith extern PetscErrorCode PetscContainerSetPointer(PetscContainer,void *); 1692fcfd50ebSBarry Smith extern PetscErrorCode PetscContainerDestroy(PetscContainer*); 16937087cfbeSBarry Smith extern PetscErrorCode PetscContainerCreate(MPI_Comm,PetscContainer *); 16947087cfbeSBarry Smith extern PetscErrorCode PetscContainerSetUserDestroy(PetscContainer, PetscErrorCode (*)(void*)); 1695d382aafbSBarry Smith 1696d382aafbSBarry Smith /* 1697d382aafbSBarry Smith For use in debuggers 1698d382aafbSBarry Smith */ 16997087cfbeSBarry Smith extern PetscMPIInt PetscGlobalRank; 17007087cfbeSBarry Smith extern PetscMPIInt PetscGlobalSize; 17017087cfbeSBarry Smith extern PetscErrorCode PetscIntView(PetscInt,const PetscInt[],PetscViewer); 17027087cfbeSBarry Smith extern PetscErrorCode PetscRealView(PetscInt,const PetscReal[],PetscViewer); 17037087cfbeSBarry Smith extern PetscErrorCode PetscScalarView(PetscInt,const PetscScalar[],PetscViewer); 1704d382aafbSBarry Smith 1705d382aafbSBarry Smith #if defined(PETSC_HAVE_MEMORY_H) 1706d382aafbSBarry Smith #include <memory.h> 1707d382aafbSBarry Smith #endif 1708d382aafbSBarry Smith #if defined(PETSC_HAVE_STDLIB_H) 1709d382aafbSBarry Smith #include <stdlib.h> 1710d382aafbSBarry Smith #endif 1711d382aafbSBarry Smith #if defined(PETSC_HAVE_STRINGS_H) 1712d382aafbSBarry Smith #include <strings.h> 1713d382aafbSBarry Smith #endif 1714d382aafbSBarry Smith #if defined(PETSC_HAVE_STRING_H) 1715d382aafbSBarry Smith #include <string.h> 1716d382aafbSBarry Smith #endif 17176c7e564aSBarry Smith 17186c7e564aSBarry Smith 1719d382aafbSBarry Smith #if defined(PETSC_HAVE_XMMINTRIN_H) 1720d382aafbSBarry Smith #include <xmmintrin.h> 1721d382aafbSBarry Smith #endif 1722d382aafbSBarry Smith #if defined(PETSC_HAVE_STDINT_H) 1723d382aafbSBarry Smith #include <stdint.h> 1724d382aafbSBarry Smith #endif 1725d382aafbSBarry Smith 1726fcfd50ebSBarry Smith #undef __FUNCT__ 1727fcfd50ebSBarry Smith #define __FUNCT__ "PetscMemcpy" 1728d382aafbSBarry Smith /*@C 1729d382aafbSBarry Smith PetscMemcpy - Copies n bytes, beginning at location b, to the space 1730d382aafbSBarry Smith beginning at location a. The two memory regions CANNOT overlap, use 1731d382aafbSBarry Smith PetscMemmove() in that case. 1732d382aafbSBarry Smith 1733d382aafbSBarry Smith Not Collective 1734d382aafbSBarry Smith 1735d382aafbSBarry Smith Input Parameters: 1736d382aafbSBarry Smith + b - pointer to initial memory space 1737d382aafbSBarry Smith - n - length (in bytes) of space to copy 1738d382aafbSBarry Smith 1739d382aafbSBarry Smith Output Parameter: 1740d382aafbSBarry Smith . a - pointer to copy space 1741d382aafbSBarry Smith 1742d382aafbSBarry Smith Level: intermediate 1743d382aafbSBarry Smith 1744d382aafbSBarry Smith Compile Option: 1745d382aafbSBarry Smith PETSC_PREFER_DCOPY_FOR_MEMCPY will cause the BLAS dcopy() routine to be used 1746d382aafbSBarry Smith for memory copies on double precision values. 1747d382aafbSBarry Smith PETSC_PREFER_COPY_FOR_MEMCPY will cause C code to be used 1748d382aafbSBarry Smith for memory copies on double precision values. 1749d382aafbSBarry Smith PETSC_PREFER_FORTRAN_FORMEMCPY will cause Fortran code to be used 1750d382aafbSBarry Smith for memory copies on double precision values. 1751d382aafbSBarry Smith 1752d382aafbSBarry Smith Note: 1753d382aafbSBarry Smith This routine is analogous to memcpy(). 1754d382aafbSBarry Smith 1755503cfb0cSBarry Smith Developer Note: this is inlined for fastest performance 1756503cfb0cSBarry Smith 1757d382aafbSBarry Smith Concepts: memory^copying 1758d382aafbSBarry Smith Concepts: copying^memory 1759d382aafbSBarry Smith 1760d382aafbSBarry Smith .seealso: PetscMemmove() 1761d382aafbSBarry Smith 1762d382aafbSBarry Smith @*/ 17637087cfbeSBarry Smith PETSC_STATIC_INLINE PetscErrorCode PetscMemcpy(void *a,const void *b,size_t n) 1764d382aafbSBarry Smith { 1765d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 1766d382aafbSBarry Smith unsigned long al = (unsigned long) a,bl = (unsigned long) b; 1767d382aafbSBarry Smith unsigned long nl = (unsigned long) n; 1768a7e36092SMatthew G Knepley PetscFunctionBegin; 1769e32f2f54SBarry Smith if (n > 0 && !b) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_NULL,"Trying to copy from a null pointer"); 1770e32f2f54SBarry Smith if (n > 0 && !a) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_NULL,"Trying to copy to a null pointer"); 1771a7e36092SMatthew G Knepley #else 1772d382aafbSBarry Smith PetscFunctionBegin; 1773a7e36092SMatthew G Knepley #endif 1774d382aafbSBarry Smith if (a != b) { 1775d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 1776d382aafbSBarry Smith if ((al > bl && (al - bl) < nl) || (bl - al) < nl) { 1777e32f2f54SBarry Smith SETERRQ3(PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"Memory regions overlap: either use PetscMemmov()\n\ 1778d382aafbSBarry Smith or make sure your copy regions and lengths are correct. \n\ 1779d382aafbSBarry Smith Length (bytes) %ld first address %ld second address %ld",nl,al,bl); 1780d382aafbSBarry Smith } 1781d382aafbSBarry Smith #endif 1782d382aafbSBarry Smith #if (defined(PETSC_PREFER_DCOPY_FOR_MEMCPY) || defined(PETSC_PREFER_COPY_FOR_MEMCPY) || defined(PETSC_PREFER_FORTRAN_FORMEMCPY)) 1783d382aafbSBarry Smith if (!(((long) a) % sizeof(PetscScalar)) && !(n % sizeof(PetscScalar))) { 1784d382aafbSBarry Smith size_t len = n/sizeof(PetscScalar); 1785d382aafbSBarry Smith #if defined(PETSC_PREFER_DCOPY_FOR_MEMCPY) 1786d382aafbSBarry Smith PetscBLASInt one = 1,blen = PetscBLASIntCast(len); 1787d382aafbSBarry Smith BLAScopy_(&blen,(PetscScalar *)b,&one,(PetscScalar *)a,&one); 1788d382aafbSBarry Smith #elif defined(PETSC_PREFER_FORTRAN_FORMEMCPY) 1789d382aafbSBarry Smith fortrancopy_(&len,(PetscScalar*)b,(PetscScalar*)a); 1790d382aafbSBarry Smith #else 1791d382aafbSBarry Smith size_t i; 1792d382aafbSBarry Smith PetscScalar *x = (PetscScalar*)b, *y = (PetscScalar*)a; 1793d382aafbSBarry Smith for (i=0; i<len; i++) y[i] = x[i]; 1794d382aafbSBarry Smith #endif 1795d382aafbSBarry Smith } else { 1796d382aafbSBarry Smith memcpy((char*)(a),(char*)(b),n); 1797d382aafbSBarry Smith } 1798d382aafbSBarry Smith #else 1799d382aafbSBarry Smith memcpy((char*)(a),(char*)(b),n); 1800d382aafbSBarry Smith #endif 1801d382aafbSBarry Smith } 1802d382aafbSBarry Smith PetscFunctionReturn(0); 1803d382aafbSBarry Smith } 1804d382aafbSBarry Smith 1805d382aafbSBarry Smith /*@C 1806d382aafbSBarry Smith PetscMemzero - Zeros the specified memory. 1807d382aafbSBarry Smith 1808d382aafbSBarry Smith Not Collective 1809d382aafbSBarry Smith 1810d382aafbSBarry Smith Input Parameters: 1811d382aafbSBarry Smith + a - pointer to beginning memory location 1812d382aafbSBarry Smith - n - length (in bytes) of memory to initialize 1813d382aafbSBarry Smith 1814d382aafbSBarry Smith Level: intermediate 1815d382aafbSBarry Smith 1816d382aafbSBarry Smith Compile Option: 1817d382aafbSBarry Smith PETSC_PREFER_BZERO - on certain machines (the IBM RS6000) the bzero() routine happens 1818d382aafbSBarry Smith to be faster than the memset() routine. This flag causes the bzero() routine to be used. 1819d382aafbSBarry Smith 1820503cfb0cSBarry Smith Developer Note: this is inlined for fastest performance 1821503cfb0cSBarry Smith 1822d382aafbSBarry Smith Concepts: memory^zeroing 1823d382aafbSBarry Smith Concepts: zeroing^memory 1824d382aafbSBarry Smith 1825d382aafbSBarry Smith .seealso: PetscMemcpy() 1826d382aafbSBarry Smith @*/ 18277087cfbeSBarry Smith PETSC_STATIC_INLINE PetscErrorCode PetscMemzero(void *a,size_t n) 1828d382aafbSBarry Smith { 1829d382aafbSBarry Smith if (n > 0) { 1830d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 1831e32f2f54SBarry Smith if (!a) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_NULL,"Trying to zero at a null pointer"); 1832d382aafbSBarry Smith #endif 1833d382aafbSBarry Smith #if defined(PETSC_PREFER_ZERO_FOR_MEMZERO) 1834d382aafbSBarry Smith if (!(((long) a) % sizeof(PetscScalar)) && !(n % sizeof(PetscScalar))) { 1835d382aafbSBarry Smith size_t i,len = n/sizeof(PetscScalar); 1836d382aafbSBarry Smith PetscScalar *x = (PetscScalar*)a; 1837d382aafbSBarry Smith for (i=0; i<len; i++) x[i] = 0.0; 1838d382aafbSBarry Smith } else { 1839d382aafbSBarry Smith #elif defined(PETSC_PREFER_FORTRAN_FOR_MEMZERO) 1840d382aafbSBarry Smith if (!(((long) a) % sizeof(PetscScalar)) && !(n % sizeof(PetscScalar))) { 1841d382aafbSBarry Smith PetscInt len = n/sizeof(PetscScalar); 1842d382aafbSBarry Smith fortranzero_(&len,(PetscScalar*)a); 1843d382aafbSBarry Smith } else { 1844d382aafbSBarry Smith #endif 1845d382aafbSBarry Smith #if defined(PETSC_PREFER_BZERO) 1846d382aafbSBarry Smith bzero((char *)a,n); 1847d382aafbSBarry Smith #else 1848d382aafbSBarry Smith memset((char*)a,0,n); 1849d382aafbSBarry Smith #endif 1850d382aafbSBarry Smith #if defined(PETSC_PREFER_ZERO_FOR_MEMZERO) || defined(PETSC_PREFER_FORTRAN_FOR_MEMZERO) 1851d382aafbSBarry Smith } 1852d382aafbSBarry Smith #endif 1853d382aafbSBarry Smith } 1854d382aafbSBarry Smith return 0; 1855d382aafbSBarry Smith } 1856d382aafbSBarry Smith 1857d382aafbSBarry Smith /*MC 1858d382aafbSBarry Smith PetscPrefetchBlock - Prefetches a block of memory 1859d382aafbSBarry Smith 1860eca87e8dSBarry Smith Synopsis: 1861eca87e8dSBarry Smith void PetscPrefetchBlock(const anytype *a,size_t n,int rw,int t) 1862eca87e8dSBarry Smith 1863d382aafbSBarry Smith Not Collective 1864d382aafbSBarry Smith 1865d382aafbSBarry Smith Input Parameters: 1866d382aafbSBarry Smith + a - pointer to first element to fetch (any type but usually PetscInt or PetscScalar) 1867d382aafbSBarry Smith . n - number of elements to fetch 1868d382aafbSBarry Smith . rw - 1 if the memory will be written to, otherwise 0 (ignored by many processors) 186950d8bf02SJed Brown - t - temporal locality (PETSC_PREFETCH_HINT_{NTA,T0,T1,T2}), see note 1870d382aafbSBarry Smith 1871d382aafbSBarry Smith Level: developer 1872d382aafbSBarry Smith 1873d382aafbSBarry Smith Notes: 1874d382aafbSBarry Smith The last two arguments (rw and t) must be compile-time constants. 1875d382aafbSBarry Smith 187650d8bf02SJed Brown Adopting Intel's x86/x86-64 conventions, there are four levels of temporal locality. Not all architectures offer 187750d8bf02SJed Brown equivalent locality hints, but the following macros are always defined to their closest analogue. 187850d8bf02SJed Brown + PETSC_PREFETCH_HINT_NTA - Non-temporal. Prefetches directly to L1, evicts to memory (skips higher level cache unless it was already there when prefetched). 187963cf1ef0SJed Brown . PETSC_PREFETCH_HINT_T0 - Fetch to all levels of cache and evict to the closest level. Use this when the memory will be reused regularly despite necessary eviction from L1. 188063cf1ef0SJed Brown . PETSC_PREFETCH_HINT_T1 - Fetch to level 2 and higher (not L1). 188163cf1ef0SJed Brown - PETSC_PREFETCH_HINT_T2 - Fetch to high-level cache only. (On many systems, T0 and T1 are equivalent.) 1882d382aafbSBarry Smith 1883d382aafbSBarry Smith This function does nothing on architectures that do not support prefetch and never errors (even if passed an invalid 1884d382aafbSBarry Smith address). 1885d382aafbSBarry Smith 1886d382aafbSBarry Smith Concepts: memory 1887d382aafbSBarry Smith M*/ 1888d382aafbSBarry Smith #define PetscPrefetchBlock(a,n,rw,t) do { \ 1889d382aafbSBarry Smith const char *_p = (const char*)(a),*_end = (const char*)((a)+(n)); \ 1890d382aafbSBarry Smith for ( ; _p < _end; _p += PETSC_LEVEL1_DCACHE_LINESIZE) PETSC_Prefetch(_p,(rw),(t)); \ 1891d382aafbSBarry Smith } while (0) 1892d382aafbSBarry Smith 1893d382aafbSBarry Smith /* 1894e3c5b3baSBarry Smith Allows accessing MATLAB Engine 1895d382aafbSBarry Smith */ 1896d382aafbSBarry Smith #include "petscmatlab.h" 1897d382aafbSBarry Smith 1898d382aafbSBarry Smith /* 1899d382aafbSBarry Smith Determine if some of the kernel computation routines use 1900d382aafbSBarry Smith Fortran (rather than C) for the numerical calculations. On some machines 1901d382aafbSBarry Smith and compilers (like complex numbers) the Fortran version of the routines 1902d382aafbSBarry Smith is faster than the C/C++ versions. The flag --with-fortran-kernels 1903e2e64c6bSBarry Smith should be used with ./configure to turn these on. 1904d382aafbSBarry Smith */ 1905d382aafbSBarry Smith #if defined(PETSC_USE_FORTRAN_KERNELS) 1906d382aafbSBarry Smith 1907d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MULTCRL) 1908d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MULTCRL 1909d382aafbSBarry Smith #endif 1910d382aafbSBarry Smith 19115a11e1b2SBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MULTAIJPERM) 19125a11e1b2SBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MULTAIJPERM 1913d382aafbSBarry Smith #endif 1914d382aafbSBarry Smith 1915d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MULTAIJ) 1916d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MULTAIJ 1917d382aafbSBarry Smith #endif 1918d382aafbSBarry Smith 1919d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MULTTRANSPOSEAIJ) 1920d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MULTTRANSPOSEAIJ 1921d382aafbSBarry Smith #endif 1922d382aafbSBarry Smith 1923d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_NORM) 1924d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_NORM 1925d382aafbSBarry Smith #endif 1926d382aafbSBarry Smith 1927d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MAXPY) 1928d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MAXPY 1929d382aafbSBarry Smith #endif 1930d382aafbSBarry Smith 1931d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_SOLVEAIJ) 1932d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_SOLVEAIJ 1933d382aafbSBarry Smith #endif 1934d382aafbSBarry Smith 1935d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_RELAXAIJ) 1936d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_RELAXAIJ 1937d382aafbSBarry Smith #endif 1938d382aafbSBarry Smith 1939d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_SOLVEBAIJ) 1940d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_SOLVEBAIJ 1941d382aafbSBarry Smith #endif 1942d382aafbSBarry Smith 1943d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MULTADDAIJ) 1944d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MULTADDAIJ 1945d382aafbSBarry Smith #endif 1946d382aafbSBarry Smith 1947d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MDOT) 1948d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MDOT 1949d382aafbSBarry Smith #endif 1950d382aafbSBarry Smith 1951d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_XTIMESY) 1952d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_XTIMESY 1953d382aafbSBarry Smith #endif 1954d382aafbSBarry Smith 1955d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_AYPX) 1956d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_AYPX 1957d382aafbSBarry Smith #endif 1958d382aafbSBarry Smith 1959d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_WAXPY) 1960d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_WAXPY 1961d382aafbSBarry Smith #endif 1962d382aafbSBarry Smith 1963d382aafbSBarry Smith #endif 1964d382aafbSBarry Smith 1965d382aafbSBarry Smith /* 1966d382aafbSBarry Smith Macros for indicating code that should be compiled with a C interface, 1967d382aafbSBarry Smith rather than a C++ interface. Any routines that are dynamically loaded 1968d382aafbSBarry Smith (such as the PCCreate_XXX() routines) must be wrapped so that the name 1969d382aafbSBarry Smith mangler does not change the functions symbol name. This just hides the 1970d382aafbSBarry Smith ugly extern "C" {} wrappers. 1971d382aafbSBarry Smith */ 1972d382aafbSBarry Smith #if defined(__cplusplus) 1973d382aafbSBarry Smith #define EXTERN_C_BEGIN extern "C" { 1974d382aafbSBarry Smith #define EXTERN_C_END } 1975d382aafbSBarry Smith #else 1976d382aafbSBarry Smith #define EXTERN_C_BEGIN 1977d382aafbSBarry Smith #define EXTERN_C_END 1978d382aafbSBarry Smith #endif 1979d382aafbSBarry Smith 1980d382aafbSBarry Smith /* --------------------------------------------------------------------*/ 1981d382aafbSBarry Smith 1982d382aafbSBarry Smith /*MC 1983d382aafbSBarry Smith MPI_Comm - the basic object used by MPI to determine which processes are involved in a 1984d382aafbSBarry Smith communication 1985d382aafbSBarry Smith 1986d382aafbSBarry Smith Level: beginner 1987d382aafbSBarry Smith 1988d382aafbSBarry Smith Note: This manual page is a place-holder because MPICH does not have a manual page for MPI_Comm 1989d382aafbSBarry Smith 1990d382aafbSBarry Smith .seealso: PETSC_COMM_WORLD, PETSC_COMM_SELF 1991d382aafbSBarry Smith M*/ 1992d382aafbSBarry Smith 1993d382aafbSBarry Smith /*MC 1994d382aafbSBarry Smith PetscScalar - PETSc type that represents either a double precision real number, a double precision 1995d382aafbSBarry Smith complex number, a single precision real number, a long double or an int - if the code is configured 1996d382aafbSBarry Smith with --with-scalar-type=real,complex --with-precision=single,double,longdouble,int,matsingle 1997d382aafbSBarry Smith 1998d382aafbSBarry Smith 1999d382aafbSBarry Smith Level: beginner 2000d382aafbSBarry Smith 2001d382aafbSBarry Smith .seealso: PetscReal, PassiveReal, PassiveScalar, MPIU_SCALAR, PetscInt 2002d382aafbSBarry Smith M*/ 2003d382aafbSBarry Smith 2004d382aafbSBarry Smith /*MC 2005d382aafbSBarry Smith PetscReal - PETSc type that represents a real number version of PetscScalar 2006d382aafbSBarry Smith 2007d382aafbSBarry Smith Level: beginner 2008d382aafbSBarry Smith 2009d382aafbSBarry Smith .seealso: PetscScalar, PassiveReal, PassiveScalar 2010d382aafbSBarry Smith M*/ 2011d382aafbSBarry Smith 2012d382aafbSBarry Smith /*MC 2013d382aafbSBarry Smith PassiveScalar - PETSc type that represents a PetscScalar 2014d382aafbSBarry Smith Level: beginner 2015d382aafbSBarry Smith 2016d382aafbSBarry Smith This is the same as a PetscScalar except in code that is automatically differentiated it is 2017d382aafbSBarry Smith treated as a constant (not an indendent or dependent variable) 2018d382aafbSBarry Smith 2019d382aafbSBarry Smith .seealso: PetscReal, PassiveReal, PetscScalar 2020d382aafbSBarry Smith M*/ 2021d382aafbSBarry Smith 2022d382aafbSBarry Smith /*MC 2023d382aafbSBarry Smith PassiveReal - PETSc type that represents a PetscReal 2024d382aafbSBarry Smith 2025d382aafbSBarry Smith Level: beginner 2026d382aafbSBarry Smith 2027d382aafbSBarry Smith This is the same as a PetscReal except in code that is automatically differentiated it is 2028d382aafbSBarry Smith treated as a constant (not an indendent or dependent variable) 2029d382aafbSBarry Smith 2030d382aafbSBarry Smith .seealso: PetscScalar, PetscReal, PassiveScalar 2031d382aafbSBarry Smith M*/ 2032d382aafbSBarry Smith 2033d382aafbSBarry Smith /*MC 2034d382aafbSBarry Smith MPIU_SCALAR - MPI datatype corresponding to PetscScalar 2035d382aafbSBarry Smith 2036d382aafbSBarry Smith Level: beginner 2037d382aafbSBarry Smith 2038d382aafbSBarry Smith Note: In MPI calls that require an MPI datatype that matches a PetscScalar or array of PetscScalars 2039d382aafbSBarry Smith pass this value 2040d382aafbSBarry Smith 2041d382aafbSBarry Smith .seealso: PetscReal, PassiveReal, PassiveScalar, PetscScalar, MPIU_INT 2042d382aafbSBarry Smith M*/ 2043d382aafbSBarry Smith 2044d382aafbSBarry Smith #if defined(PETSC_HAVE_MPIIO) 2045d382aafbSBarry Smith #if !defined(PETSC_WORDS_BIGENDIAN) 2046d382aafbSBarry Smith extern PetscErrorCode MPIU_File_write_all(MPI_File,void*,PetscMPIInt,MPI_Datatype,MPI_Status*); 2047d382aafbSBarry Smith extern PetscErrorCode MPIU_File_read_all(MPI_File,void*,PetscMPIInt,MPI_Datatype,MPI_Status*); 2048d382aafbSBarry Smith #else 2049d382aafbSBarry Smith #define MPIU_File_write_all(a,b,c,d,e) MPI_File_write_all(a,b,c,d,e) 2050d382aafbSBarry Smith #define MPIU_File_read_all(a,b,c,d,e) MPI_File_read_all(a,b,c,d,e) 2051d382aafbSBarry Smith #endif 2052d382aafbSBarry Smith #endif 2053d382aafbSBarry Smith 2054d382aafbSBarry Smith /* the following petsc_static_inline require petscerror.h */ 2055d382aafbSBarry Smith 2056d382aafbSBarry Smith /* Limit MPI to 32-bits */ 2057d382aafbSBarry Smith #define PETSC_MPI_INT_MAX 2147483647 2058d382aafbSBarry Smith #define PETSC_MPI_INT_MIN -2147483647 2059d382aafbSBarry Smith /* Limit BLAS to 32-bits */ 2060d382aafbSBarry Smith #define PETSC_BLAS_INT_MAX 2147483647 2061d382aafbSBarry Smith #define PETSC_BLAS_INT_MIN -2147483647 2062d382aafbSBarry Smith /* On 32 bit systems HDF5 is limited by size of integer, because hsize_t is defined as size_t */ 2063d382aafbSBarry Smith #define PETSC_HDF5_INT_MAX 2147483647 2064d382aafbSBarry Smith #define PETSC_HDF5_INT_MIN -2147483647 2065d382aafbSBarry Smith 2066d382aafbSBarry Smith #if defined(PETSC_USE_64BIT_INDICES) 2067e32f2f54SBarry Smith #define PetscMPIIntCheck(a) if ((a) > PETSC_MPI_INT_MAX) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Message too long for MPI") 2068e32f2f54SBarry Smith #define PetscBLASIntCheck(a) if ((a) > PETSC_BLAS_INT_MAX) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Array too long for BLAS/LAPACK") 2069eb10ad5fSJed Brown #define PetscMPIIntCast(a) (PetscMPIInt)(a);PetscMPIIntCheck(a) 2070eb10ad5fSJed Brown #define PetscBLASIntCast(a) (PetscBLASInt)(a);PetscBLASIntCheck(a) 2071d382aafbSBarry Smith 2072d382aafbSBarry Smith #if (PETSC_SIZEOF_SIZE_T == 4) 2073e32f2f54SBarry Smith #define PetscHDF5IntCheck(a) if ((a) > PETSC_HDF5_INT_MAX) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Array too long for HDF5") 2074eb10ad5fSJed Brown #define PetscHDF5IntCast(a) (hsize_t)(a);PetscHDF5IntCheck(a) 2075d382aafbSBarry Smith #else 2076d382aafbSBarry Smith #define PetscHDF5IntCheck(a) 2077d382aafbSBarry Smith #define PetscHDF5IntCast(a) a 2078d382aafbSBarry Smith #endif 2079d382aafbSBarry Smith 2080d382aafbSBarry Smith #else 2081d382aafbSBarry Smith #define PetscMPIIntCheck(a) 2082d382aafbSBarry Smith #define PetscBLASIntCheck(a) 2083d382aafbSBarry Smith #define PetscHDF5IntCheck(a) 2084d382aafbSBarry Smith #define PetscMPIIntCast(a) a 2085d382aafbSBarry Smith #define PetscBLASIntCast(a) a 2086d382aafbSBarry Smith #define PetscHDF5IntCast(a) a 2087d382aafbSBarry Smith #endif 2088d382aafbSBarry Smith 2089d382aafbSBarry Smith 2090d382aafbSBarry Smith /* 2091d382aafbSBarry Smith The IBM include files define hz, here we hide it so that it may be used 2092d382aafbSBarry Smith as a regular user variable. 2093d382aafbSBarry Smith */ 2094d382aafbSBarry Smith #if defined(hz) 2095d382aafbSBarry Smith #undef hz 2096d382aafbSBarry Smith #endif 2097d382aafbSBarry Smith 2098d382aafbSBarry Smith /* For arrays that contain filenames or paths */ 2099d382aafbSBarry Smith 2100d382aafbSBarry Smith 2101d382aafbSBarry Smith #if defined(PETSC_HAVE_LIMITS_H) 2102d382aafbSBarry Smith #include <limits.h> 2103d382aafbSBarry Smith #endif 2104d382aafbSBarry Smith #if defined(PETSC_HAVE_SYS_PARAM_H) 2105d382aafbSBarry Smith #include <sys/param.h> 2106d382aafbSBarry Smith #endif 2107d382aafbSBarry Smith #if defined(PETSC_HAVE_SYS_TYPES_H) 2108d382aafbSBarry Smith #include <sys/types.h> 2109d382aafbSBarry Smith #endif 2110d382aafbSBarry Smith #if defined(MAXPATHLEN) 2111d382aafbSBarry Smith # define PETSC_MAX_PATH_LEN MAXPATHLEN 2112d382aafbSBarry Smith #elif defined(MAX_PATH) 2113d382aafbSBarry Smith # define PETSC_MAX_PATH_LEN MAX_PATH 2114d382aafbSBarry Smith #elif defined(_MAX_PATH) 2115d382aafbSBarry Smith # define PETSC_MAX_PATH_LEN _MAX_PATH 2116d382aafbSBarry Smith #else 2117d382aafbSBarry Smith # define PETSC_MAX_PATH_LEN 4096 2118d382aafbSBarry Smith #endif 2119d382aafbSBarry Smith 2120d382aafbSBarry Smith /* Special support for C++ */ 2121d382aafbSBarry Smith #include "petscsys.hh" 21226c7e564aSBarry Smith 2123d382aafbSBarry Smith 2124d382aafbSBarry Smith /*MC 2125d382aafbSBarry Smith 2126d382aafbSBarry Smith UsingFortran - Fortran can be used with PETSc in four distinct approaches 2127d382aafbSBarry Smith 2128d382aafbSBarry Smith $ 1) classic Fortran 77 style 2129d1716517SSatish Balay $#include "finclude/petscXXX.h" to work with material from the XXX component of PETSc 2130d382aafbSBarry Smith $ XXX variablename 2131d382aafbSBarry Smith $ You cannot use this approach if you wish to use the Fortran 90 specific PETSc routines 2132d382aafbSBarry Smith $ which end in F90; such as VecGetArrayF90() 2133d382aafbSBarry Smith $ 2134d382aafbSBarry Smith $ 2) classic Fortran 90 style 2135d1716517SSatish Balay $#include "finclude/petscXXX.h" 2136d1716517SSatish Balay $#include "finclude/petscXXX.h90" to work with material from the XXX component of PETSc 2137d382aafbSBarry Smith $ XXX variablename 2138d382aafbSBarry Smith $ 2139d382aafbSBarry Smith $ 3) Using Fortran modules 2140d1716517SSatish Balay $#include "finclude/petscXXXdef.h" 2141d382aafbSBarry Smith $ use petscXXXX 2142d382aafbSBarry Smith $ XXX variablename 2143d382aafbSBarry Smith $ 2144d382aafbSBarry Smith $ 4) Use Fortran modules and Fortran data types for PETSc types 2145d1716517SSatish Balay $#include "finclude/petscXXXdef.h" 2146d382aafbSBarry Smith $ use petscXXXX 2147d382aafbSBarry Smith $ type(XXX) variablename 2148e2e64c6bSBarry Smith $ To use this approach you must ./configure PETSc with the additional 2149d382aafbSBarry Smith $ option --with-fortran-datatypes You cannot use the type(XXX) declaration approach without using Fortran modules 2150d382aafbSBarry Smith 2151d382aafbSBarry Smith Finally if you absolutely do not want to use any #include you can use either 2152d382aafbSBarry Smith 2153d382aafbSBarry Smith $ 3a) skip the #include BUT you cannot use any PETSc data type names like Vec, Mat, PetscInt, PetscErrorCode etc 2154d382aafbSBarry Smith $ and you must declare the variables as integer, for example 2155d382aafbSBarry Smith $ integer variablename 2156d382aafbSBarry Smith $ 2157d382aafbSBarry Smith $ 4a) skip the #include, you use the object types like type(Vec) type(Mat) but cannot use the data type 2158d382aafbSBarry Smith $ names like PetscErrorCode, PetscInt etc. again for those you must use integer 2159d382aafbSBarry Smith 2160d382aafbSBarry Smith We recommend either 2 or 3. Approaches 2 and 3 provide type checking for most PETSc function calls; 4 has type checking 2161d382aafbSBarry Smith for only a few PETSc functions. 2162d382aafbSBarry Smith 2163d382aafbSBarry Smith Fortran type checking with interfaces is strick, this means you cannot pass a scalar value when an array value 2164d382aafbSBarry Smith is expected (even though it is legal Fortran). For example when setting a single value in a matrix with MatSetValues() 2165d382aafbSBarry Smith you cannot have something like 2166d382aafbSBarry Smith $ PetscInt row,col 2167d382aafbSBarry Smith $ PetscScalar val 2168d382aafbSBarry Smith $ ... 2169d382aafbSBarry Smith $ call MatSetValues(mat,1,row,1,col,val,INSERT_VALUES,ierr) 2170d382aafbSBarry Smith You must instead have 2171d382aafbSBarry Smith $ PetscInt row(1),col(1) 2172d382aafbSBarry Smith $ PetscScalar val(1) 2173d382aafbSBarry Smith $ ... 2174d382aafbSBarry Smith $ call MatSetValues(mat,1,row,1,col,val,INSERT_VALUES,ierr) 2175d382aafbSBarry Smith 2176d382aafbSBarry Smith 2177d382aafbSBarry Smith See the example src/vec/vec/examples/tutorials/ex20f90.F90 for an example that can use all four approaches 2178d382aafbSBarry Smith 2179d382aafbSBarry Smith Developer Notes: The finclude/petscXXXdef.h contain all the #defines (would be typedefs in C code) these 2180d382aafbSBarry Smith automatically include their predecessors; for example finclude/petscvecdef.h includes finclude/petscisdef.h 2181d382aafbSBarry Smith 2182d382aafbSBarry Smith The finclude/petscXXXX.h contain all the parameter statements for that package. These automatically include 2183d382aafbSBarry Smith their finclude/petscXXXdef.h file but DO NOT automatically include their predecessors; for example 2184d382aafbSBarry Smith finclude/petscvec.h does NOT automatically include finclude/petscis.h 2185d382aafbSBarry Smith 2186d382aafbSBarry Smith The finclude/ftn-custom/petscXXXdef.h90 are not intended to be used directly in code, they define the 2187e2e64c6bSBarry Smith Fortran data type type(XXX) (for example type(Vec)) when PETSc is ./configure with the --with-fortran-datatypes option. 2188d382aafbSBarry Smith 2189d382aafbSBarry Smith The finclude/ftn-custom/petscXXX.h90 (not included directly by code) contain interface definitions for 2190d382aafbSBarry Smith the PETSc Fortran stubs that have different bindings then their C version (for example VecGetArrayF90). 2191d382aafbSBarry Smith 2192d382aafbSBarry Smith The finclude/ftn-auto/petscXXX.h90 (not included directly by code) contain interface definitions generated 2193d382aafbSBarry Smith automatically by "make allfortranstubs". 2194d382aafbSBarry Smith 2195e2e64c6bSBarry Smith The finclude/petscXXX.h90 includes the custom finclude/ftn-custom/petscXXX.h90 and if ./configure 2196d382aafbSBarry Smith was run with --with-fortran-interfaces it also includes the finclude/ftn-auto/petscXXX.h90 These DO NOT automatically 2197d382aafbSBarry Smith include their predecessors 2198d382aafbSBarry Smith 2199d382aafbSBarry Smith Level: beginner 2200d382aafbSBarry Smith 2201d382aafbSBarry Smith M*/ 2202d382aafbSBarry Smith 22037087cfbeSBarry Smith extern PetscErrorCode PetscGetArchType(char[],size_t); 22047087cfbeSBarry Smith extern PetscErrorCode PetscGetHostName(char[],size_t); 22057087cfbeSBarry Smith extern PetscErrorCode PetscGetUserName(char[],size_t); 22067087cfbeSBarry Smith extern PetscErrorCode PetscGetProgramName(char[],size_t); 22077087cfbeSBarry Smith extern PetscErrorCode PetscSetProgramName(const char[]); 22087087cfbeSBarry Smith extern PetscErrorCode PetscGetDate(char[],size_t); 2209d382aafbSBarry Smith 22107087cfbeSBarry Smith extern PetscErrorCode PetscSortInt(PetscInt,PetscInt[]); 22117087cfbeSBarry Smith extern PetscErrorCode PetscSortRemoveDupsInt(PetscInt*,PetscInt[]); 22127087cfbeSBarry Smith extern PetscErrorCode PetscSortIntWithPermutation(PetscInt,const PetscInt[],PetscInt[]); 22137087cfbeSBarry Smith extern PetscErrorCode PetscSortStrWithPermutation(PetscInt,const char*[],PetscInt[]); 22147087cfbeSBarry Smith extern PetscErrorCode PetscSortIntWithArray(PetscInt,PetscInt[],PetscInt[]); 22157087cfbeSBarry Smith extern PetscErrorCode PetscSortMPIIntWithArray(PetscMPIInt,PetscMPIInt[],PetscMPIInt[]); 22167087cfbeSBarry Smith extern PetscErrorCode PetscSortIntWithScalarArray(PetscInt,PetscInt[],PetscScalar[]); 22177087cfbeSBarry Smith extern PetscErrorCode PetscSortReal(PetscInt,PetscReal[]); 22187087cfbeSBarry Smith extern PetscErrorCode PetscSortRealWithPermutation(PetscInt,const PetscReal[],PetscInt[]); 22197087cfbeSBarry Smith extern PetscErrorCode PetscSortSplit(PetscInt,PetscInt,PetscScalar[],PetscInt[]); 22207087cfbeSBarry Smith extern PetscErrorCode PetscSortSplitReal(PetscInt,PetscInt,PetscReal[],PetscInt[]); 22217087cfbeSBarry Smith extern PetscErrorCode PetscProcessTree(PetscInt,const PetscBool [],const PetscInt[],PetscInt*,PetscInt**,PetscInt**,PetscInt**,PetscInt**); 2222d382aafbSBarry Smith 22237087cfbeSBarry Smith extern PetscErrorCode PetscSetDisplay(void); 22247087cfbeSBarry Smith extern PetscErrorCode PetscGetDisplay(char[],size_t); 2225d382aafbSBarry Smith 2226d382aafbSBarry Smith /*E 2227d382aafbSBarry Smith PetscRandomType - String with the name of a PETSc randomizer 2228d382aafbSBarry Smith with an optional dynamic library name, for example 2229d382aafbSBarry Smith http://www.mcs.anl.gov/petsc/lib.a:myrandcreate() 2230d382aafbSBarry Smith 2231d382aafbSBarry Smith Level: beginner 2232d382aafbSBarry Smith 2233e2e64c6bSBarry Smith Notes: to use the SPRNG you must have ./configure PETSc 2234d382aafbSBarry Smith with the option --download-sprng 2235d382aafbSBarry Smith 2236d382aafbSBarry Smith .seealso: PetscRandomSetType(), PetscRandom 2237d382aafbSBarry Smith E*/ 2238d382aafbSBarry Smith #define PetscRandomType char* 2239d382aafbSBarry Smith #define PETSCRAND "rand" 2240d382aafbSBarry Smith #define PETSCRAND48 "rand48" 2241d382aafbSBarry Smith #define PETSCSPRNG "sprng" 2242d382aafbSBarry Smith 2243d382aafbSBarry Smith /* Logging support */ 22447087cfbeSBarry Smith extern PetscClassId PETSC_RANDOM_CLASSID; 2245d382aafbSBarry Smith 22467087cfbeSBarry Smith extern PetscErrorCode PetscRandomInitializePackage(const char[]); 2247d382aafbSBarry Smith 2248d382aafbSBarry Smith /*S 2249d382aafbSBarry Smith PetscRandom - Abstract PETSc object that manages generating random numbers 2250d382aafbSBarry Smith 2251d382aafbSBarry Smith Level: intermediate 2252d382aafbSBarry Smith 2253d382aafbSBarry Smith Concepts: random numbers 2254d382aafbSBarry Smith 2255d382aafbSBarry Smith .seealso: PetscRandomCreate(), PetscRandomGetValue(), PetscRandomType 2256d382aafbSBarry Smith S*/ 2257d382aafbSBarry Smith typedef struct _p_PetscRandom* PetscRandom; 2258d382aafbSBarry Smith 2259d382aafbSBarry Smith /* Dynamic creation and loading functions */ 2260d382aafbSBarry Smith extern PetscFList PetscRandomList; 2261ace3abfcSBarry Smith extern PetscBool PetscRandomRegisterAllCalled; 2262d382aafbSBarry Smith 22637087cfbeSBarry Smith extern PetscErrorCode PetscRandomRegisterAll(const char []); 22647087cfbeSBarry Smith extern PetscErrorCode PetscRandomRegister(const char[],const char[],const char[],PetscErrorCode (*)(PetscRandom)); 22657087cfbeSBarry Smith extern PetscErrorCode PetscRandomRegisterDestroy(void); 22667087cfbeSBarry Smith extern PetscErrorCode PetscRandomSetType(PetscRandom, const PetscRandomType); 22677087cfbeSBarry Smith extern PetscErrorCode PetscRandomSetFromOptions(PetscRandom); 22687087cfbeSBarry Smith extern PetscErrorCode PetscRandomGetType(PetscRandom, const PetscRandomType*); 22697087cfbeSBarry Smith extern PetscErrorCode PetscRandomViewFromOptions(PetscRandom,char*); 22707087cfbeSBarry Smith extern PetscErrorCode PetscRandomView(PetscRandom,PetscViewer); 2271d382aafbSBarry Smith 2272d382aafbSBarry Smith /*MC 2273d382aafbSBarry Smith PetscRandomRegisterDynamic - Adds a new PetscRandom component implementation 2274d382aafbSBarry Smith 2275d382aafbSBarry Smith Synopsis: 22761890ba74SBarry Smith PetscErrorCode PetscRandomRegisterDynamic(const char *name, const char *path, const char *func_name, PetscErrorCode (*create_func)(PetscRandom)) 2277d382aafbSBarry Smith 2278d382aafbSBarry Smith Not Collective 2279d382aafbSBarry Smith 2280d382aafbSBarry Smith Input Parameters: 2281d382aafbSBarry Smith + name - The name of a new user-defined creation routine 2282d382aafbSBarry Smith . path - The path (either absolute or relative) of the library containing this routine 2283d382aafbSBarry Smith . func_name - The name of routine to create method context 2284d382aafbSBarry Smith - create_func - The creation routine itself 2285d382aafbSBarry Smith 2286d382aafbSBarry Smith Notes: 2287d382aafbSBarry Smith PetscRandomRegisterDynamic() may be called multiple times to add several user-defined randome number generators 2288d382aafbSBarry Smith 2289d382aafbSBarry Smith If dynamic libraries are used, then the fourth input argument (routine_create) is ignored. 2290d382aafbSBarry Smith 2291d382aafbSBarry Smith Sample usage: 2292d382aafbSBarry Smith .vb 2293d382aafbSBarry Smith PetscRandomRegisterDynamic("my_rand","/home/username/my_lib/lib/libO/solaris/libmy.a", "MyPetscRandomtorCreate", MyPetscRandomtorCreate); 2294d382aafbSBarry Smith .ve 2295d382aafbSBarry Smith 2296d382aafbSBarry Smith Then, your random type can be chosen with the procedural interface via 2297d382aafbSBarry Smith .vb 2298d382aafbSBarry Smith PetscRandomCreate(MPI_Comm, PetscRandom *); 2299d382aafbSBarry Smith PetscRandomSetType(PetscRandom,"my_random_name"); 2300d382aafbSBarry Smith .ve 2301d382aafbSBarry Smith or at runtime via the option 2302d382aafbSBarry Smith .vb 2303d382aafbSBarry Smith -random_type my_random_name 2304d382aafbSBarry Smith .ve 2305d382aafbSBarry Smith 2306d382aafbSBarry Smith Notes: $PETSC_ARCH occuring in pathname will be replaced with appropriate values. 2307d382aafbSBarry Smith 2308d382aafbSBarry Smith For an example of the code needed to interface your own random number generator see 2309d382aafbSBarry Smith src/sys/random/impls/rand/rand.c 2310d382aafbSBarry Smith 2311d382aafbSBarry Smith Level: advanced 2312d382aafbSBarry Smith 2313d382aafbSBarry Smith .keywords: PetscRandom, register 2314d382aafbSBarry Smith .seealso: PetscRandomRegisterAll(), PetscRandomRegisterDestroy(), PetscRandomRegister() 2315d382aafbSBarry Smith M*/ 2316d382aafbSBarry Smith #if defined(PETSC_USE_DYNAMIC_LIBRARIES) 2317d382aafbSBarry Smith #define PetscRandomRegisterDynamic(a,b,c,d) PetscRandomRegister(a,b,c,0) 2318d382aafbSBarry Smith #else 2319d382aafbSBarry Smith #define PetscRandomRegisterDynamic(a,b,c,d) PetscRandomRegister(a,b,c,d) 2320d382aafbSBarry Smith #endif 2321d382aafbSBarry Smith 23227087cfbeSBarry Smith extern PetscErrorCode PetscRandomCreate(MPI_Comm,PetscRandom*); 23237087cfbeSBarry Smith extern PetscErrorCode PetscRandomGetValue(PetscRandom,PetscScalar*); 23247087cfbeSBarry Smith extern PetscErrorCode PetscRandomGetValueReal(PetscRandom,PetscReal*); 23257087cfbeSBarry Smith extern PetscErrorCode PetscRandomGetInterval(PetscRandom,PetscScalar*,PetscScalar*); 23267087cfbeSBarry Smith extern PetscErrorCode PetscRandomSetInterval(PetscRandom,PetscScalar,PetscScalar); 23277087cfbeSBarry Smith extern PetscErrorCode PetscRandomSetSeed(PetscRandom,unsigned long); 23287087cfbeSBarry Smith extern PetscErrorCode PetscRandomGetSeed(PetscRandom,unsigned long *); 23297087cfbeSBarry Smith extern PetscErrorCode PetscRandomSeed(PetscRandom); 2330fcfd50ebSBarry Smith extern PetscErrorCode PetscRandomDestroy(PetscRandom*); 2331d382aafbSBarry Smith 23327087cfbeSBarry Smith extern PetscErrorCode PetscGetFullPath(const char[],char[],size_t); 23337087cfbeSBarry Smith extern PetscErrorCode PetscGetRelativePath(const char[],char[],size_t); 23347087cfbeSBarry Smith extern PetscErrorCode PetscGetWorkingDirectory(char[],size_t); 23357087cfbeSBarry Smith extern PetscErrorCode PetscGetRealPath(const char[],char[]); 23367087cfbeSBarry Smith extern PetscErrorCode PetscGetHomeDirectory(char[],size_t); 23377087cfbeSBarry Smith extern PetscErrorCode PetscTestFile(const char[],char,PetscBool *); 23387087cfbeSBarry Smith extern PetscErrorCode PetscTestDirectory(const char[],char,PetscBool *); 2339d382aafbSBarry Smith 23407087cfbeSBarry Smith extern PetscErrorCode PetscBinaryRead(int,void*,PetscInt,PetscDataType); 23417087cfbeSBarry Smith extern PetscErrorCode PetscBinarySynchronizedRead(MPI_Comm,int,void*,PetscInt,PetscDataType); 23427087cfbeSBarry Smith extern PetscErrorCode PetscBinarySynchronizedWrite(MPI_Comm,int,void*,PetscInt,PetscDataType,PetscBool ); 23437087cfbeSBarry Smith extern PetscErrorCode PetscBinaryWrite(int,void*,PetscInt,PetscDataType,PetscBool ); 23447087cfbeSBarry Smith extern PetscErrorCode PetscBinaryOpen(const char[],PetscFileMode,int *); 23457087cfbeSBarry Smith extern PetscErrorCode PetscBinaryClose(int); 23467087cfbeSBarry Smith extern PetscErrorCode PetscSharedTmp(MPI_Comm,PetscBool *); 23477087cfbeSBarry Smith extern PetscErrorCode PetscSharedWorkingDirectory(MPI_Comm,PetscBool *); 23487087cfbeSBarry Smith extern PetscErrorCode PetscGetTmp(MPI_Comm,char[],size_t); 23497087cfbeSBarry Smith extern PetscErrorCode PetscFileRetrieve(MPI_Comm,const char[],char[],size_t,PetscBool *); 23507087cfbeSBarry Smith extern PetscErrorCode PetscLs(MPI_Comm,const char[],char[],size_t,PetscBool *); 23517087cfbeSBarry Smith extern PetscErrorCode PetscOpenSocket(char*,int,int*); 23527087cfbeSBarry Smith extern PetscErrorCode PetscWebServe(MPI_Comm,int); 2353d382aafbSBarry Smith 2354d382aafbSBarry Smith /* 2355d382aafbSBarry Smith In binary files variables are stored using the following lengths, 2356d382aafbSBarry Smith regardless of how they are stored in memory on any one particular 2357d382aafbSBarry Smith machine. Use these rather then sizeof() in computing sizes for 2358d382aafbSBarry Smith PetscBinarySeek(). 2359d382aafbSBarry Smith */ 2360d382aafbSBarry Smith #define PETSC_BINARY_INT_SIZE (32/8) 2361d382aafbSBarry Smith #define PETSC_BINARY_FLOAT_SIZE (32/8) 2362d382aafbSBarry Smith #define PETSC_BINARY_CHAR_SIZE (8/8) 2363d382aafbSBarry Smith #define PETSC_BINARY_SHORT_SIZE (16/8) 2364d382aafbSBarry Smith #define PETSC_BINARY_DOUBLE_SIZE (64/8) 2365d382aafbSBarry Smith #define PETSC_BINARY_SCALAR_SIZE sizeof(PetscScalar) 2366d382aafbSBarry Smith 2367d382aafbSBarry Smith /*E 2368d382aafbSBarry Smith PetscBinarySeekType - argument to PetscBinarySeek() 2369d382aafbSBarry Smith 2370d382aafbSBarry Smith Level: advanced 2371d382aafbSBarry Smith 2372d382aafbSBarry Smith .seealso: PetscBinarySeek(), PetscBinarySynchronizedSeek() 2373d382aafbSBarry Smith E*/ 2374d382aafbSBarry Smith typedef enum {PETSC_BINARY_SEEK_SET = 0,PETSC_BINARY_SEEK_CUR = 1,PETSC_BINARY_SEEK_END = 2} PetscBinarySeekType; 23757087cfbeSBarry Smith extern PetscErrorCode PetscBinarySeek(int,off_t,PetscBinarySeekType,off_t*); 23767087cfbeSBarry Smith extern PetscErrorCode PetscBinarySynchronizedSeek(MPI_Comm,int,off_t,PetscBinarySeekType,off_t*); 2377d382aafbSBarry Smith 23787087cfbeSBarry Smith extern PetscErrorCode PetscSetDebugTerminal(const char[]); 23797087cfbeSBarry Smith extern PetscErrorCode PetscSetDebugger(const char[],PetscBool ); 23807087cfbeSBarry Smith extern PetscErrorCode PetscSetDefaultDebugger(void); 23817087cfbeSBarry Smith extern PetscErrorCode PetscSetDebuggerFromString(char*); 23827087cfbeSBarry Smith extern PetscErrorCode PetscAttachDebugger(void); 23837087cfbeSBarry Smith extern PetscErrorCode PetscStopForDebugger(void); 2384d382aafbSBarry Smith 23857087cfbeSBarry Smith extern PetscErrorCode PetscGatherNumberOfMessages(MPI_Comm,const PetscMPIInt[],const PetscMPIInt[],PetscMPIInt*); 23867087cfbeSBarry Smith extern PetscErrorCode PetscGatherMessageLengths(MPI_Comm,PetscMPIInt,PetscMPIInt,const PetscMPIInt[],PetscMPIInt**,PetscMPIInt**); 23877087cfbeSBarry Smith extern PetscErrorCode PetscGatherMessageLengths2(MPI_Comm,PetscMPIInt,PetscMPIInt,const PetscMPIInt[],const PetscMPIInt[],PetscMPIInt**,PetscMPIInt**,PetscMPIInt**); 23887087cfbeSBarry Smith extern PetscErrorCode PetscPostIrecvInt(MPI_Comm,PetscMPIInt,PetscMPIInt,const PetscMPIInt[],const PetscMPIInt[],PetscInt***,MPI_Request**); 23897087cfbeSBarry Smith extern PetscErrorCode PetscPostIrecvScalar(MPI_Comm,PetscMPIInt,PetscMPIInt,const PetscMPIInt[],const PetscMPIInt[],PetscScalar***,MPI_Request**); 2390d382aafbSBarry Smith 23917087cfbeSBarry Smith extern PetscErrorCode PetscSSEIsEnabled(MPI_Comm,PetscBool *,PetscBool *); 2392d382aafbSBarry Smith 2393d382aafbSBarry Smith /*E 2394d382aafbSBarry Smith InsertMode - Whether entries are inserted or added into vectors or matrices 2395d382aafbSBarry Smith 2396d382aafbSBarry Smith Level: beginner 2397d382aafbSBarry Smith 2398d382aafbSBarry Smith .seealso: VecSetValues(), MatSetValues(), VecSetValue(), VecSetValuesBlocked(), 2399d382aafbSBarry Smith VecSetValuesLocal(), VecSetValuesBlockedLocal(), MatSetValuesBlocked(), 2400d382aafbSBarry Smith MatSetValuesBlockedLocal(), MatSetValuesLocal(), VecScatterBegin(), VecScatterEnd() 2401d382aafbSBarry Smith E*/ 240211f088b5SMatthew G Knepley typedef enum {NOT_SET_VALUES, INSERT_VALUES, ADD_VALUES, MAX_VALUES, INSERT_ALL_VALUES, ADD_ALL_VALUES} InsertMode; 2403d382aafbSBarry Smith 2404d382aafbSBarry Smith /*MC 2405d382aafbSBarry Smith INSERT_VALUES - Put a value into a vector or matrix, overwrites any previous value 2406d382aafbSBarry Smith 2407d382aafbSBarry Smith Level: beginner 2408d382aafbSBarry Smith 2409d382aafbSBarry Smith .seealso: InsertMode, VecSetValues(), MatSetValues(), VecSetValue(), VecSetValuesBlocked(), 2410eca87e8dSBarry Smith VecSetValuesLocal(), VecSetValuesBlockedLocal(), MatSetValuesBlocked(), ADD_VALUES, 2411eca87e8dSBarry Smith MatSetValuesBlockedLocal(), MatSetValuesLocal(), VecScatterBegin(), VecScatterEnd(), MAX_VALUES 2412d382aafbSBarry Smith 2413d382aafbSBarry Smith M*/ 2414d382aafbSBarry Smith 2415d382aafbSBarry Smith /*MC 2416d382aafbSBarry Smith ADD_VALUES - Adds a value into a vector or matrix, if there previously was no value, just puts the 2417d382aafbSBarry Smith value into that location 2418d382aafbSBarry Smith 2419d382aafbSBarry Smith Level: beginner 2420d382aafbSBarry Smith 2421d382aafbSBarry Smith .seealso: InsertMode, VecSetValues(), MatSetValues(), VecSetValue(), VecSetValuesBlocked(), 2422eca87e8dSBarry Smith VecSetValuesLocal(), VecSetValuesBlockedLocal(), MatSetValuesBlocked(), INSERT_VALUES, 2423eca87e8dSBarry Smith MatSetValuesBlockedLocal(), MatSetValuesLocal(), VecScatterBegin(), VecScatterEnd(), MAX_VALUES 2424d382aafbSBarry Smith 2425d382aafbSBarry Smith M*/ 2426d382aafbSBarry Smith 2427d382aafbSBarry Smith /*MC 2428d382aafbSBarry Smith MAX_VALUES - Puts the maximum of the scattered/gathered value and the current value into each location 2429d382aafbSBarry Smith 2430d382aafbSBarry Smith Level: beginner 2431d382aafbSBarry Smith 2432d382aafbSBarry Smith .seealso: InsertMode, VecScatterBegin(), VecScatterEnd(), ADD_VALUES, INSERT_VALUES 2433d382aafbSBarry Smith 2434d382aafbSBarry Smith M*/ 2435d382aafbSBarry Smith 2436d382aafbSBarry Smith /*S 2437d382aafbSBarry Smith PetscSubcomm - Context of MPI subcommunicators, used by PCREDUNDANT 2438d382aafbSBarry Smith 2439d382aafbSBarry Smith Level: advanced 2440d382aafbSBarry Smith 2441d382aafbSBarry Smith Concepts: communicator, create 2442d382aafbSBarry Smith S*/ 2443d382aafbSBarry Smith typedef struct _n_PetscSubcomm* PetscSubcomm; 2444d382aafbSBarry Smith 2445d382aafbSBarry Smith struct _n_PetscSubcomm { 2446d382aafbSBarry Smith MPI_Comm parent; /* parent communicator */ 2447d382aafbSBarry Smith MPI_Comm dupparent; /* duplicate parent communicator, under which the processors of this subcomm have contiguous rank */ 2448d382aafbSBarry Smith MPI_Comm comm; /* this communicator */ 2449d382aafbSBarry Smith PetscInt n; /* num of subcommunicators under the parent communicator */ 2450d382aafbSBarry Smith PetscInt color; /* color of processors belong to this communicator */ 2451d382aafbSBarry Smith }; 2452d382aafbSBarry Smith 2453638faf0bSHong Zhang typedef enum {PETSC_SUBCOMM_GENERAL=0,PETSC_SUBCOMM_CONTIGUOUS=1,PETSC_SUBCOMM_INTERLACED=2} PetscSubcommType; 2454638faf0bSHong Zhang extern const char *PetscSubcommTypes[]; 2455638faf0bSHong Zhang 24567087cfbeSBarry Smith extern PetscErrorCode PetscSubcommCreate(MPI_Comm,PetscSubcomm*); 2457fcfd50ebSBarry Smith extern PetscErrorCode PetscSubcommDestroy(PetscSubcomm*); 24587087cfbeSBarry Smith extern PetscErrorCode PetscSubcommSetNumber(PetscSubcomm,PetscInt); 24597087cfbeSBarry Smith extern PetscErrorCode PetscSubcommSetType(PetscSubcomm,const PetscSubcommType); 24607087cfbeSBarry Smith extern PetscErrorCode PetscSubcommSetTypeGeneral(PetscSubcomm,PetscMPIInt,PetscMPIInt,PetscMPIInt); 2461d382aafbSBarry Smith 2462d382aafbSBarry Smith PETSC_EXTERN_CXX_END 24636c7e564aSBarry Smith 24649e03d832SJed Brown /* Reset __FUNCT__ in case the user does not define it themselves */ 24659e03d832SJed Brown #undef __FUNCT__ 24669e03d832SJed Brown #define __FUNCT__ "User provided function" 24679e03d832SJed Brown 2468d382aafbSBarry Smith #endif 2469