1d382aafbSBarry Smith /* 2d382aafbSBarry Smith This is the main PETSc include file (for C and C++). It is included by all 3d382aafbSBarry Smith other PETSc include files, so it almost never has to be specifically included. 4d382aafbSBarry Smith */ 56c7e564aSBarry Smith #if !defined(__PETSCSYS_H) 66c7e564aSBarry Smith #define __PETSCSYS_H 7d382aafbSBarry Smith /* ========================================================================== */ 8d382aafbSBarry Smith /* 9d382aafbSBarry Smith petscconf.h is contained in ${PETSC_ARCH}/include/petscconf.h it is 10d382aafbSBarry Smith found automatically by the compiler due to the -I${PETSC_DIR}/${PETSC_ARCH}/include 112981ebdbSBarry Smith in the conf/variables definition of PETSC_INCLUDE. For --prefix installs the ${PETSC_ARCH}/ 122981ebdbSBarry Smith does not exist and petscconf.h is in the same directory as the other PETSc include files. 13d382aafbSBarry Smith */ 142c8e378dSBarry Smith #include <petscconf.h> 152c8e378dSBarry Smith #include <petscfix.h> 16d382aafbSBarry Smith 1773fca5a0SBarry Smith #if defined(PETSC_DESIRE_FEATURE_TEST_MACROS) 1873fca5a0SBarry Smith /* 1973fca5a0SBarry Smith Feature test macros must be included before headers defined by IEEE Std 1003.1-2001 2073fca5a0SBarry Smith We only turn these in PETSc source files that require them by setting PETSC_DESIRE_FEATURE_TEST_MACROS 2173fca5a0SBarry Smith */ 22216f1ae6SBarry Smith #if defined(PETSC__POSIX_C_SOURCE_200112L) && !defined(_POSIX_C_SOURCE) 2373fca5a0SBarry Smith #define _POSIX_C_SOURCE 200112L 2473fca5a0SBarry Smith #endif 25216f1ae6SBarry Smith #if defined(PETSC__BSD_SOURCE) && !defined(_BSD_SOURCE) 2673fca5a0SBarry Smith #define _BSD_SOURCE 2773fca5a0SBarry Smith #endif 2807f00807SSatish Balay #if defined(PETSC__DEFAULT_SOURCE) && !defined(_DEFAULT_SOURCE) 2907f00807SSatish Balay #define _DEFAULT_SOURCE 3007f00807SSatish Balay #endif 31ea0fecefSShri Abhyankar #if defined(PETSC__GNU_SOURCE) && !defined(_GNU_SOURCE) 32ea0fecefSShri Abhyankar #define _GNU_SOURCE 33ea0fecefSShri Abhyankar #endif 3473fca5a0SBarry Smith #endif 3573fca5a0SBarry Smith 36d382aafbSBarry Smith /* ========================================================================== */ 37d382aafbSBarry Smith /* 382c280183SJed Brown This facilitates using the C version of PETSc from C++ and the C++ version from C. 39d382aafbSBarry Smith */ 401ec50b02SJed Brown #if defined(__cplusplus) 411ec50b02SJed Brown # define PETSC_FUNCTION_NAME PETSC_FUNCTION_NAME_CXX 421ec50b02SJed Brown #else 431ec50b02SJed Brown # define PETSC_FUNCTION_NAME PETSC_FUNCTION_NAME_C 441ec50b02SJed Brown #endif 45d382aafbSBarry Smith 46c5e4d11fSDmitry Karpeev /* ========================================================================== */ 47c5e4d11fSDmitry Karpeev /* 48c5e4d11fSDmitry Karpeev Since PETSc manages its own extern "C" handling users should never include PETSc include 49c5e4d11fSDmitry Karpeev files within extern "C" 50c5e4d11fSDmitry Karpeev */ 51c5e4d11fSDmitry Karpeev #if defined(__cplusplus) 52c5e4d11fSDmitry Karpeev void assert_never_put_petsc_headers_inside_an_extern_c(int); void assert_never_put_petsc_headers_inside_an_extern_c(double); 53c5e4d11fSDmitry Karpeev #endif 54c5e4d11fSDmitry Karpeev 55ed938b00SJed Brown #if defined(__cplusplus) 56ed938b00SJed Brown # define PETSC_RESTRICT PETSC_CXX_RESTRICT 57ed938b00SJed Brown #else 58ed938b00SJed Brown # define PETSC_RESTRICT PETSC_C_RESTRICT 59ed938b00SJed Brown #endif 60ed938b00SJed Brown 61ed938b00SJed Brown #if defined(__cplusplus) 62ed938b00SJed Brown # define PETSC_STATIC_INLINE PETSC_CXX_STATIC_INLINE 63ed938b00SJed Brown #else 64ed938b00SJed Brown # define PETSC_STATIC_INLINE PETSC_C_STATIC_INLINE 65ed938b00SJed Brown #endif 66ed938b00SJed Brown 67ab699e31SSatish Balay #if defined(_WIN32) && defined(PETSC_USE_SHARED_LIBRARIES) /* For Win32 shared libraries */ 68014dd563SJed Brown # define PETSC_DLLEXPORT __declspec(dllexport) 69014dd563SJed Brown # define PETSC_DLLIMPORT __declspec(dllimport) 7021f66b81SJed Brown # define PETSC_VISIBILITY_INTERNAL 71014dd563SJed Brown #elif defined(PETSC_USE_VISIBILITY) 72014dd563SJed Brown # define PETSC_DLLEXPORT __attribute__((visibility ("default"))) 73014dd563SJed Brown # define PETSC_DLLIMPORT __attribute__((visibility ("default"))) 7421f66b81SJed Brown # define PETSC_VISIBILITY_INTERNAL __attribute__((visibility ("hidden"))) 75d382aafbSBarry Smith #else 76014dd563SJed Brown # define PETSC_DLLEXPORT 77014dd563SJed Brown # define PETSC_DLLIMPORT 7821f66b81SJed Brown # define PETSC_VISIBILITY_INTERNAL 79014dd563SJed Brown #endif 80014dd563SJed Brown 81014dd563SJed Brown #if defined(petsc_EXPORTS) /* CMake defines this when building the shared library */ 82014dd563SJed Brown # define PETSC_VISIBILITY_PUBLIC PETSC_DLLEXPORT 83014dd563SJed Brown #else /* Win32 users need this to import symbols from petsc.dll */ 84014dd563SJed Brown # define PETSC_VISIBILITY_PUBLIC PETSC_DLLIMPORT 85014dd563SJed Brown #endif 86014dd563SJed Brown 872c280183SJed Brown #if defined(__cplusplus) 88014dd563SJed Brown #define PETSC_EXTERN extern "C" PETSC_VISIBILITY_PUBLIC 89638cfed1SJed Brown #define PETSC_EXTERN_TYPEDEF extern "C" 9021f66b81SJed Brown #define PETSC_INTERN extern "C" PETSC_VISIBILITY_INTERNAL 91014dd563SJed Brown #else 92014dd563SJed Brown #define PETSC_EXTERN extern PETSC_VISIBILITY_PUBLIC 93638cfed1SJed Brown #define PETSC_EXTERN_TYPEDEF 946258c452SJed Brown #define PETSC_INTERN extern PETSC_VISIBILITY_INTERNAL 95d382aafbSBarry Smith #endif 9627710113SBarry Smith 972c8e378dSBarry Smith #include <petscversion.h> 98301d30feSBarry Smith #define PETSC_AUTHOR_INFO " The PETSc Team\n petsc-maint@mcs.anl.gov\n http://www.mcs.anl.gov/petsc/\n" 99d382aafbSBarry Smith 100d382aafbSBarry Smith /* ========================================================================== */ 101d382aafbSBarry Smith 102d382aafbSBarry Smith /* 103d382aafbSBarry Smith Defines the interface to MPI allowing the use of all MPI functions. 104d382aafbSBarry Smith 105d382aafbSBarry Smith PETSc does not use the C++ binding of MPI at ALL. The following flag 106d382aafbSBarry Smith makes sure the C++ bindings are not included. The C++ bindings REQUIRE 107d382aafbSBarry Smith putting mpi.h before ANY C++ include files, we cannot control this 108d382aafbSBarry Smith with all PETSc users. Users who want to use the MPI C++ bindings can include 109d382aafbSBarry Smith mpicxx.h directly in their code 110d382aafbSBarry Smith */ 111fa9e63e2SJed Brown #if !defined(MPICH_SKIP_MPICXX) 112d382aafbSBarry Smith # define MPICH_SKIP_MPICXX 1 113fa9e63e2SJed Brown #endif 114fa9e63e2SJed Brown #if !defined(OMPI_SKIP_MPICXX) 115d382aafbSBarry Smith # define OMPI_SKIP_MPICXX 1 116fa9e63e2SJed Brown #endif 1172c8e378dSBarry Smith #include <mpi.h> 11865013866SBarry Smith 119d382aafbSBarry Smith /* 120a7886beaSBarry Smith Perform various sanity checks that the correct mpi.h is being included at compile time. 121a7886beaSBarry Smith This usually happens because 122a7886beaSBarry Smith * either an unexpected mpi.h is in the default compiler path (i.e. in /usr/include) or 123a7886beaSBarry Smith * an extra include path -I/something (which contains the unexpected mpi.h) is being passed to the compiler 124a7886beaSBarry Smith */ 125a7886beaSBarry Smith #if defined(PETSC_HAVE_MPIUNI) 126a7886beaSBarry Smith # if !defined(__MPIUNI_H) 127a7886beaSBarry Smith # error "PETSc was configured with --with-mpi=0 but now appears to be compiling using a different mpi.h" 128a7886beaSBarry Smith # endif 129a7886beaSBarry Smith #elif defined(PETSC_HAVE_MPICH_NUMVERSION) 130a7886beaSBarry Smith # if !defined(MPICH_NUMVERSION) 131a7886beaSBarry Smith # error "PETSc was configured with MPICH but now appears to be compiling using a non-MPICH mpi.h" 132a7886beaSBarry Smith # elif MPICH_NUMVERSION != PETSC_HAVE_MPICH_NUMVERSION 133a7886beaSBarry Smith # error "PETSc was configured with one MPICH mpi.h version but now appears to be compiling using a different MPICH mpi.h version" 134a7886beaSBarry Smith # endif 135a7886beaSBarry Smith #elif defined(PETSC_HAVE_OMPI_MAJOR_VERSION) 136a7886beaSBarry Smith # if !defined(OMPI_MAJOR_VERSION) 137a7886beaSBarry Smith # error "PETSc was configured with OpenMPI but now appears to be compiling using a non-OpenMPI mpi.h" 138c3ac57cfSSatish Balay # elif (OMPI_MAJOR_VERSION != PETSC_HAVE_OMPI_MAJOR_VERSION) || (OMPI_MINOR_VERSION != PETSC_HAVE_OMPI_MINOR_VERSION) || (OMPI_RELEASE_VERSION != PETSC_HAVE_OMPI_RELEASE_VERSION) 139c3ac57cfSSatish Balay # error "PETSc was configured with one OpenMPI mpi.h version but now appears to be compiling using a different OpenMPI mpi.h version" 140a7886beaSBarry Smith # endif 141a7886beaSBarry Smith #endif 142a7886beaSBarry Smith 143a7886beaSBarry Smith /* 1442981ebdbSBarry Smith Need to put stdio.h AFTER mpi.h for MPICH2 with C++ compiler 145d382aafbSBarry Smith see the top of mpicxx.h in the MPICH2 distribution. 146d382aafbSBarry Smith */ 147d382aafbSBarry Smith #include <stdio.h> 148d382aafbSBarry Smith 149d382aafbSBarry Smith /* MSMPI on 32bit windows requires this yukky hack - that breaks MPI standard compliance */ 150d382aafbSBarry Smith #if !defined(MPIAPI) 151d382aafbSBarry Smith #define MPIAPI 152d382aafbSBarry Smith #endif 153d382aafbSBarry Smith 154894dd566SJed Brown /* Support for Clang (>=3.2) matching type tag arguments with void* buffer types */ 155c5e4d11fSDmitry Karpeev #if defined(__has_attribute) && defined(works_with_const_which_is_not_true) 156894dd566SJed Brown # if __has_attribute(argument_with_type_tag) && __has_attribute(pointer_with_type_tag) && __has_attribute(type_tag_for_datatype) 157894dd566SJed Brown # define PetscAttrMPIPointerWithType(bufno,typeno) __attribute__((pointer_with_type_tag(MPI,bufno,typeno))) 1588ad47952SJed Brown # define PetscAttrMPITypeTag(type) __attribute__((type_tag_for_datatype(MPI,type))) 1598ad47952SJed Brown # define PetscAttrMPITypeTagLayoutCompatible(type) __attribute__((type_tag_for_datatype(MPI,type,layout_compatible))) 160894dd566SJed Brown # endif 161894dd566SJed Brown #endif 162894dd566SJed Brown #if !defined(PetscAttrMPIPointerWithType) 163894dd566SJed Brown # define PetscAttrMPIPointerWithType(bufno,typeno) 1648ad47952SJed Brown # define PetscAttrMPITypeTag(type) 1658ad47952SJed Brown # define PetscAttrMPITypeTagLayoutCompatible(type) 166894dd566SJed Brown #endif 167b3506946SBarry Smith 168d382aafbSBarry Smith /*MC 1691957e957SBarry Smith PetscErrorCode - datatype used for return error code from almost all PETSc functions 170d382aafbSBarry Smith 171d382aafbSBarry Smith Level: beginner 172d382aafbSBarry Smith 173d382aafbSBarry Smith .seealso: CHKERRQ, SETERRQ 174d382aafbSBarry Smith M*/ 175d382aafbSBarry Smith typedef int PetscErrorCode; 176d382aafbSBarry Smith 177d382aafbSBarry Smith /*MC 178d382aafbSBarry Smith 179503cfb0cSBarry Smith PetscClassId - A unique id used to identify each PETSc class. 180d382aafbSBarry Smith 1811957e957SBarry Smith Notes: Use PetscClassIdRegister() to obtain a new value for a new class being created. Usually 1821957e957SBarry Smith XXXInitializePackage() calls it for each class it defines. 1831957e957SBarry Smith 1841957e957SBarry Smith Developer Notes: Internal integer stored in the _p_PetscObject data structure. 1851957e957SBarry Smith These are all computed by an offset from the lowest one, PETSC_SMALLEST_CLASSID. 1861957e957SBarry Smith 1871957e957SBarry Smith Level: developer 188d382aafbSBarry Smith 1890700a824SBarry Smith .seealso: PetscClassIdRegister(), PetscLogEventRegister(), PetscHeaderCreate() 190d382aafbSBarry Smith M*/ 1910700a824SBarry Smith typedef int PetscClassId; 192d382aafbSBarry Smith 193d382aafbSBarry Smith 194d382aafbSBarry Smith /*MC 195d382aafbSBarry Smith PetscMPIInt - datatype used to represent 'int' parameters to MPI functions. 196d382aafbSBarry Smith 197d382aafbSBarry Smith Level: intermediate 198d382aafbSBarry Smith 199d382aafbSBarry Smith Notes: usually this is the same as PetscInt, but if PETSc was built with --with-64-bit-indices but 2003b2a8c54SBarry Smith standard C/Fortran integers are 32 bit then this is NOT the same as PetscInt it remains 32 bit 201d382aafbSBarry Smith 2024dc2109aSBarry Smith PetscMPIIntCast(a,&b) checks if the given PetscInt a will fit in a PetscMPIInt, if not it 2032981ebdbSBarry Smith generates a PETSC_ERR_ARG_OUTOFRANGE error. 204d382aafbSBarry Smith 205d382aafbSBarry Smith .seealso: PetscBLASInt, PetscInt 206d382aafbSBarry Smith 207d382aafbSBarry Smith M*/ 208d382aafbSBarry Smith typedef int PetscMPIInt; 209d382aafbSBarry Smith 210d382aafbSBarry Smith /*MC 211d382aafbSBarry Smith PetscEnum - datatype used to pass enum types within PETSc functions. 212d382aafbSBarry Smith 213d382aafbSBarry Smith Level: intermediate 214d382aafbSBarry Smith 215d382aafbSBarry Smith .seealso: PetscOptionsGetEnum(), PetscOptionsEnum(), PetscBagRegisterEnum() 216d382aafbSBarry Smith M*/ 217d382aafbSBarry Smith typedef enum { ENUM_DUMMY } PetscEnum; 2185a576424SJed Brown PETSC_EXTERN MPI_Datatype MPIU_ENUM PetscAttrMPITypeTag(PetscEnum); 219d382aafbSBarry Smith 220fab38c73SJed Brown #if defined(PETSC_HAVE_STDINT_H) 221fab38c73SJed Brown #include <stdint.h> 222fab38c73SJed Brown #endif 223fab38c73SJed Brown 224d382aafbSBarry Smith /*MC 225d382aafbSBarry Smith PetscInt - PETSc type that represents integer - used primarily to 2263b2a8c54SBarry Smith represent size of arrays and indexing into arrays. Its size can be configured with the option 227d382aafbSBarry Smith --with-64-bit-indices - to be either 32bit or 64bit [default 32 bit ints] 228d382aafbSBarry Smith 229d382aafbSBarry Smith Level: intermediate 230d382aafbSBarry Smith 231d382aafbSBarry Smith .seealso: PetscScalar, PetscBLASInt, PetscMPIInt 232d382aafbSBarry Smith M*/ 233fab38c73SJed Brown #if defined(PETSC_HAVE_STDINT_H) 234fab38c73SJed Brown typedef int64_t Petsc64bitInt; 235fab38c73SJed Brown #elif (PETSC_SIZEOF_LONG_LONG == 8) 236f505b413SSatish Balay typedef long long Petsc64bitInt; 237f505b413SSatish Balay #elif defined(PETSC_HAVE___INT64) 238236ed0a3SSatish Balay typedef __int64 Petsc64bitInt; 239236ed0a3SSatish Balay #else 240f505b413SSatish Balay typedef unknown64bit Petsc64bitInt 241236ed0a3SSatish Balay #endif 242d382aafbSBarry Smith #if defined(PETSC_USE_64BIT_INDICES) 243236ed0a3SSatish Balay typedef Petsc64bitInt PetscInt; 24441860013SJed Brown # if defined(PETSC_HAVE_MPI_INT64_T) /* MPI_INT64_T is not guaranteed to be a macro */ 24568db2e82SFande Kong # define MPIU_INT MPI_LONG_LONG_INT 246fab38c73SJed Brown # else 247d382aafbSBarry Smith # define MPIU_INT MPI_LONG_LONG_INT 248fab38c73SJed Brown # endif 249d382aafbSBarry Smith #else 250d382aafbSBarry Smith typedef int PetscInt; 251d382aafbSBarry Smith #define MPIU_INT MPI_INT 252d382aafbSBarry Smith #endif 253e56f5c9eSBarry Smith #if defined(PETSC_HAVE_MPI_INT64_T) 254e56f5c9eSBarry Smith # define MPIU_INT64 MPI_INT64_T 255e56f5c9eSBarry Smith #else 256e56f5c9eSBarry Smith # define MPIU_INT64 MPI_LONG_LONG_INT 257e56f5c9eSBarry Smith #endif 258236ed0a3SSatish Balay 259d382aafbSBarry Smith 260702bc34aSSatish Balay /*MC 261702bc34aSSatish Balay PetscBLASInt - datatype used to represent 'int' parameters to BLAS/LAPACK functions. 262702bc34aSSatish Balay 263702bc34aSSatish Balay Level: intermediate 264702bc34aSSatish Balay 265702bc34aSSatish Balay Notes: usually this is the same as PetscInt, but if PETSc was built with --with-64-bit-indices but 266702bc34aSSatish Balay standard C/Fortran integers are 32 bit then this is NOT the same as PetscInt it remains 32 bit 267702bc34aSSatish Balay (except on very rare BLAS/LAPACK implementations that support 64 bit integers see the note below). 268702bc34aSSatish Balay 269c5df96a5SBarry Smith PetscErrorCode PetscBLASIntCast(a,&b) checks if the given PetscInt a will fit in a PetscBLASInt, if not it 2702981ebdbSBarry Smith generates a PETSC_ERR_ARG_OUTOFRANGE error 271702bc34aSSatish Balay 2722981ebdbSBarry Smith Installation Notes: The 64bit versions of MATLAB ship with BLAS and LAPACK that use 64 bit integers for sizes etc, 273702bc34aSSatish Balay if you run ./configure with the option 274702bc34aSSatish Balay --with-blas-lapack-lib=[/Applications/MATLAB_R2010b.app/bin/maci64/libmwblas.dylib,/Applications/MATLAB_R2010b.app/bin/maci64/libmwlapack.dylib] 2752981ebdbSBarry Smith but you need to also use --known-64-bit-blas-indices. 2762981ebdbSBarry Smith 2772981ebdbSBarry Smith MKL also ships with 64 bit integer versions of the BLAS and LAPACK, if you select those you must also ./configure with --known-64-bit-blas-indices 2782981ebdbSBarry Smith 2792981ebdbSBarry Smith Developer Notes: Eventually ./configure should automatically determine the size of the integers used by BLAS/LAPACK. 280702bc34aSSatish Balay 281702bc34aSSatish Balay External packages such as hypre, ML, SuperLU etc do not provide any support for passing 64 bit integers to BLAS/LAPACK so cannot 282702bc34aSSatish Balay be used with PETSc if you have set PetscBLASInt to long int. 283702bc34aSSatish Balay 284702bc34aSSatish Balay .seealso: PetscMPIInt, PetscInt 285702bc34aSSatish Balay 286702bc34aSSatish Balay M*/ 287702bc34aSSatish Balay #if defined(PETSC_HAVE_64BIT_BLAS_INDICES) 288702bc34aSSatish Balay typedef Petsc64bitInt PetscBLASInt; 289702bc34aSSatish Balay #else 290702bc34aSSatish Balay typedef int PetscBLASInt; 291702bc34aSSatish Balay #endif 292702bc34aSSatish Balay 29358b60935SBarry Smith /*EC 29458b60935SBarry Smith 2952981ebdbSBarry Smith PetscPrecision - indicates what precision the object is using. This is currently not used. 29658b60935SBarry Smith 29758b60935SBarry Smith Level: advanced 29858b60935SBarry Smith 29958b60935SBarry Smith .seealso: PetscObjectSetPrecision() 30058b60935SBarry Smith E*/ 30158b60935SBarry Smith typedef enum { PETSC_PRECISION_SINGLE=4,PETSC_PRECISION_DOUBLE=8 } PetscPrecision; 302014dd563SJed Brown PETSC_EXTERN const char *PetscPrecisions[]; 30358b60935SBarry Smith 304503cfb0cSBarry Smith /* 305503cfb0cSBarry Smith For the rare cases when one needs to send a size_t object with MPI 306503cfb0cSBarry Smith */ 307d382aafbSBarry Smith #if (PETSC_SIZEOF_SIZE_T) == (PETSC_SIZEOF_INT) 308adcec1e5SJed Brown #define MPIU_SIZE_T MPI_UNSIGNED 309d382aafbSBarry Smith #elif (PETSC_SIZEOF_SIZE_T) == (PETSC_SIZEOF_LONG) 310adcec1e5SJed Brown #define MPIU_SIZE_T MPI_UNSIGNED_LONG 311d382aafbSBarry Smith #elif (PETSC_SIZEOF_SIZE_T) == (PETSC_SIZEOF_LONG_LONG) 312adcec1e5SJed Brown #define MPIU_SIZE_T MPI_UNSIGNED_LONG_LONG 313d382aafbSBarry Smith #else 314d382aafbSBarry Smith #error "Unknown size for size_t! Send us a bugreport at petsc-maint@mcs.anl.gov" 315d382aafbSBarry Smith #endif 316d382aafbSBarry Smith 317d382aafbSBarry Smith 318d382aafbSBarry Smith /* 319d382aafbSBarry Smith You can use PETSC_STDOUT as a replacement of stdout. You can also change 320d382aafbSBarry Smith the value of PETSC_STDOUT to redirect all standard output elsewhere 321d382aafbSBarry Smith */ 322014dd563SJed Brown PETSC_EXTERN FILE* PETSC_STDOUT; 323d382aafbSBarry Smith 324d382aafbSBarry Smith /* 325d382aafbSBarry Smith You can use PETSC_STDERR as a replacement of stderr. You can also change 326d382aafbSBarry Smith the value of PETSC_STDERR to redirect all standard error elsewhere 327d382aafbSBarry Smith */ 328014dd563SJed Brown PETSC_EXTERN FILE* PETSC_STDERR; 329d382aafbSBarry Smith 330d382aafbSBarry Smith /*MC 331d382aafbSBarry Smith PetscUnlikely - hints the compiler that the given condition is usually FALSE 332d382aafbSBarry Smith 333d382aafbSBarry Smith Synopsis: 334aaa7dc30SBarry Smith #include <petscsys.h> 335ace3abfcSBarry Smith PetscBool PetscUnlikely(PetscBool cond) 336d382aafbSBarry Smith 337eca87e8dSBarry Smith Not Collective 338eca87e8dSBarry Smith 339d382aafbSBarry Smith Input Parameters: 340d382aafbSBarry Smith . cond - condition or expression 341d382aafbSBarry Smith 342d382aafbSBarry Smith Note: This returns the same truth value, it is only a hint to compilers that the resulting 343d382aafbSBarry Smith branch is unlikely. 344d382aafbSBarry Smith 345d382aafbSBarry Smith Level: advanced 346d382aafbSBarry Smith 347d382aafbSBarry Smith .seealso: PetscLikely(), CHKERRQ 348d382aafbSBarry Smith M*/ 349d382aafbSBarry Smith 350d382aafbSBarry Smith /*MC 351d382aafbSBarry Smith PetscLikely - hints the compiler that the given condition is usually TRUE 352d382aafbSBarry Smith 353d382aafbSBarry Smith Synopsis: 354aaa7dc30SBarry Smith #include <petscsys.h> 355ace3abfcSBarry Smith PetscBool PetscUnlikely(PetscBool cond) 356d382aafbSBarry Smith 357eca87e8dSBarry Smith Not Collective 358eca87e8dSBarry Smith 359d382aafbSBarry Smith Input Parameters: 360d382aafbSBarry Smith . cond - condition or expression 361d382aafbSBarry Smith 362d382aafbSBarry Smith Note: This returns the same truth value, it is only a hint to compilers that the resulting 363d382aafbSBarry Smith branch is likely. 364d382aafbSBarry Smith 365d382aafbSBarry Smith Level: advanced 366d382aafbSBarry Smith 367d382aafbSBarry Smith .seealso: PetscUnlikely() 368d382aafbSBarry Smith M*/ 369d382aafbSBarry Smith #if defined(PETSC_HAVE_BUILTIN_EXPECT) 370d382aafbSBarry Smith # define PetscUnlikely(cond) __builtin_expect(!!(cond),0) 371d382aafbSBarry Smith # define PetscLikely(cond) __builtin_expect(!!(cond),1) 372d382aafbSBarry Smith #else 373cd3f4ce9SJed Brown # define PetscUnlikely(cond) (cond) 374cd3f4ce9SJed Brown # define PetscLikely(cond) (cond) 375d382aafbSBarry Smith #endif 376d382aafbSBarry Smith 377d382aafbSBarry Smith /* 378d382aafbSBarry Smith Declare extern C stuff after including external header files 379d382aafbSBarry Smith */ 380d382aafbSBarry Smith 381d382aafbSBarry Smith 382d382aafbSBarry Smith /* 383d382aafbSBarry Smith Basic PETSc constants 384d382aafbSBarry Smith */ 385d382aafbSBarry Smith 386d382aafbSBarry Smith /*E 387ace3abfcSBarry Smith PetscBool - Logical variable. Actually an int in C and a logical in Fortran. 388d382aafbSBarry Smith 389d382aafbSBarry Smith Level: beginner 390d382aafbSBarry Smith 391ace3abfcSBarry Smith Developer Note: Why have PetscBool , why not use bool in C? The problem is that K and R C, C99 and C++ all have different mechanisms for 39234e82e7dSBarry Smith boolean values. It is not easy to have a simple macro that that will work properly in all circumstances with all three mechanisms. 39334e82e7dSBarry Smith 394d382aafbSBarry Smith E*/ 395ace3abfcSBarry Smith typedef enum { PETSC_FALSE,PETSC_TRUE } PetscBool; 3966a6fc655SJed Brown PETSC_EXTERN const char *const PetscBools[]; 3975a576424SJed Brown PETSC_EXTERN MPI_Datatype MPIU_BOOL PetscAttrMPITypeTag(PetscBool); 39870b3c8c7SBarry Smith 3998b49ba18SBarry Smith /* 4008b49ba18SBarry Smith Defines some elementary mathematics functions and constants. 4018b49ba18SBarry Smith */ 4028b49ba18SBarry Smith #include <petscmath.h> 4038b49ba18SBarry Smith 40470b3c8c7SBarry Smith /*E 40570b3c8c7SBarry Smith PetscCopyMode - Determines how an array passed to certain functions is copied or retained 40670b3c8c7SBarry Smith 40770b3c8c7SBarry Smith Level: beginner 40870b3c8c7SBarry Smith 40970b3c8c7SBarry Smith $ PETSC_COPY_VALUES - the array values are copied into new space, the user is free to reuse or delete the passed in array 41070b3c8c7SBarry Smith $ PETSC_OWN_POINTER - the array values are NOT copied, the object takes ownership of the array and will free it later, the user cannot change or 41170b3c8c7SBarry Smith $ delete the array. The array MUST have been obtained with PetscMalloc(). Hence this mode cannot be used in Fortran. 41270b3c8c7SBarry Smith $ PETSC_USE_POINTER - the array values are NOT copied, the object uses the array but does NOT take ownership of the array. The user cannot use 41370b3c8c7SBarry Smith the array but the user must delete the array after the object is destroyed. 41470b3c8c7SBarry Smith 41570b3c8c7SBarry Smith E*/ 41670b3c8c7SBarry Smith typedef enum { PETSC_COPY_VALUES, PETSC_OWN_POINTER, PETSC_USE_POINTER} PetscCopyMode; 4176a6fc655SJed Brown PETSC_EXTERN const char *const PetscCopyModes[]; 418d382aafbSBarry Smith 419d382aafbSBarry Smith /*MC 420ace3abfcSBarry Smith PETSC_FALSE - False value of PetscBool 421d382aafbSBarry Smith 422d382aafbSBarry Smith Level: beginner 423d382aafbSBarry Smith 424d382aafbSBarry Smith Note: Zero integer 425d382aafbSBarry Smith 426ace3abfcSBarry Smith .seealso: PetscBool , PETSC_TRUE 427d382aafbSBarry Smith M*/ 428d382aafbSBarry Smith 429d382aafbSBarry Smith /*MC 430ace3abfcSBarry Smith PETSC_TRUE - True value of PetscBool 431d382aafbSBarry Smith 432d382aafbSBarry Smith Level: beginner 433d382aafbSBarry Smith 434d382aafbSBarry Smith Note: Nonzero integer 435d382aafbSBarry Smith 436ace3abfcSBarry Smith .seealso: PetscBool , PETSC_FALSE 437d382aafbSBarry Smith M*/ 438d382aafbSBarry Smith 439d382aafbSBarry Smith /*MC 4400298fd71SBarry Smith PETSC_NULL - standard way of passing in a null or array or pointer. This is deprecated in C/C++ simply use NULL 441d382aafbSBarry Smith 442d382aafbSBarry Smith Level: beginner 443d382aafbSBarry Smith 444d382aafbSBarry Smith Notes: accepted by many PETSc functions to not set a parameter and instead use 445d382aafbSBarry Smith some default 446d382aafbSBarry Smith 447d382aafbSBarry Smith This macro does not exist in Fortran; you must use PETSC_NULL_INTEGER, 448503cfb0cSBarry Smith PETSC_NULL_DOUBLE_PRECISION, PETSC_NULL_FUNCTION, PETSC_NULL_OBJECT etc 449d382aafbSBarry Smith 450d382aafbSBarry Smith .seealso: PETSC_DECIDE, PETSC_DEFAULT, PETSC_IGNORE, PETSC_DETERMINE 451d382aafbSBarry Smith 452d382aafbSBarry Smith M*/ 4533bcbec90SJed Brown #define PETSC_NULL NULL 454d382aafbSBarry Smith 455d382aafbSBarry Smith /*MC 4560298fd71SBarry Smith PETSC_IGNORE - same as NULL, means PETSc will ignore this argument 457d382aafbSBarry Smith 458d382aafbSBarry Smith Level: beginner 459d382aafbSBarry Smith 460d382aafbSBarry Smith Note: accepted by many PETSc functions to not set a parameter and instead use 461d382aafbSBarry Smith some default 462d382aafbSBarry Smith 463d382aafbSBarry Smith Fortran Notes: This macro does not exist in Fortran; you must use PETSC_NULL_INTEGER, 464d382aafbSBarry Smith PETSC_NULL_DOUBLE_PRECISION etc 465d382aafbSBarry Smith 466d382aafbSBarry Smith .seealso: PETSC_DECIDE, PETSC_DEFAULT, PETSC_NULL, PETSC_DETERMINE 467d382aafbSBarry Smith 468d382aafbSBarry Smith M*/ 4690298fd71SBarry Smith #define PETSC_IGNORE NULL 470d382aafbSBarry Smith 471d382aafbSBarry Smith /*MC 472557d4da8SBarry Smith PETSC_DECIDE - standard way of passing in integer or floating point parameter 473557d4da8SBarry Smith where you wish PETSc to use the default. 474557d4da8SBarry Smith 475557d4da8SBarry Smith Level: beginner 476557d4da8SBarry Smith 477557d4da8SBarry Smith .seealso: PETSC_NULL, PETSC_DEFAULT, PETSC_IGNORE, PETSC_DETERMINE 478557d4da8SBarry Smith 479557d4da8SBarry Smith M*/ 480557d4da8SBarry Smith #define PETSC_DECIDE -1 481557d4da8SBarry Smith 482557d4da8SBarry Smith /*MC 483d382aafbSBarry Smith PETSC_DETERMINE - standard way of passing in integer or floating point parameter 484d382aafbSBarry Smith where you wish PETSc to compute the required value. 485d382aafbSBarry Smith 486d382aafbSBarry Smith Level: beginner 487d382aafbSBarry Smith 488557d4da8SBarry Smith 489557d4da8SBarry Smith Developer Note: I would like to use const PetscInt PETSC_DETERMINE = PETSC_DECIDE; but for 490557d4da8SBarry Smith some reason this is not allowed by the standard even though PETSC_DECIDE is a constant value. 491557d4da8SBarry Smith 4920298fd71SBarry Smith .seealso: PETSC_DECIDE, PETSC_DEFAULT, PETSC_IGNORE, VecSetSizes() 493d382aafbSBarry Smith 494d382aafbSBarry Smith M*/ 495d382aafbSBarry Smith #define PETSC_DETERMINE PETSC_DECIDE 496d382aafbSBarry Smith 497d382aafbSBarry Smith /*MC 498557d4da8SBarry Smith PETSC_DEFAULT - standard way of passing in integer or floating point parameter 499557d4da8SBarry Smith where you wish PETSc to use the default. 500557d4da8SBarry Smith 501557d4da8SBarry Smith Level: beginner 502557d4da8SBarry Smith 5032d80014bSBarry Smith Fortran Notes: You need to use PETSC_DEFAULT_INTEGER or PETSC_DEFAULT_REAL. 504557d4da8SBarry Smith 5050298fd71SBarry Smith .seealso: PETSC_DECIDE, PETSC_IGNORE, PETSC_DETERMINE 506557d4da8SBarry Smith 507557d4da8SBarry Smith M*/ 508557d4da8SBarry Smith #define PETSC_DEFAULT -2 509557d4da8SBarry Smith 510557d4da8SBarry Smith /*MC 511d382aafbSBarry Smith PETSC_COMM_WORLD - the equivalent of the MPI_COMM_WORLD communicator which represents 512d382aafbSBarry Smith all the processs that PETSc knows about. 513d382aafbSBarry Smith 514d382aafbSBarry Smith Level: beginner 515d382aafbSBarry Smith 516d382aafbSBarry Smith Notes: By default PETSC_COMM_WORLD and MPI_COMM_WORLD are identical unless you wish to 517d382aafbSBarry Smith run PETSc on ONLY a subset of MPI_COMM_WORLD. In that case create your new (smaller) 518d382aafbSBarry Smith communicator, call it, say comm, and set PETSC_COMM_WORLD = comm BEFORE calling 519a990b902SBarry Smith PetscInitialize(), but after MPI_Init() has been called. 520a990b902SBarry Smith 521a990b902SBarry Smith The value of PETSC_COMM_WORLD should never be USED/accessed before PetscInitialize() 522a990b902SBarry Smith is called because it may not have a valid value yet. 523d382aafbSBarry Smith 524d382aafbSBarry Smith .seealso: PETSC_COMM_SELF 525d382aafbSBarry Smith 526d382aafbSBarry Smith M*/ 527014dd563SJed Brown PETSC_EXTERN MPI_Comm PETSC_COMM_WORLD; 528d382aafbSBarry Smith 529d382aafbSBarry Smith /*MC 530503cfb0cSBarry Smith PETSC_COMM_SELF - This is always MPI_COMM_SELF 531d382aafbSBarry Smith 532d382aafbSBarry Smith Level: beginner 533d382aafbSBarry Smith 534a990b902SBarry Smith Notes: Do not USE/access or set this variable before PetscInitialize() has been called. 535a990b902SBarry Smith 536d382aafbSBarry Smith .seealso: PETSC_COMM_WORLD 537d382aafbSBarry Smith 538d382aafbSBarry Smith M*/ 539d382aafbSBarry Smith #define PETSC_COMM_SELF MPI_COMM_SELF 540d382aafbSBarry Smith 541d6f2c3cbSBarry Smith PETSC_EXTERN PetscBool PetscBeganMPI; 542014dd563SJed Brown PETSC_EXTERN PetscBool PetscInitializeCalled; 543014dd563SJed Brown PETSC_EXTERN PetscBool PetscFinalizeCalled; 544014dd563SJed Brown PETSC_EXTERN PetscBool PetscCUSPSynchronize; 5454cf1874eSKarl Rupp PETSC_EXTERN PetscBool PetscViennaCLSynchronize; 546d382aafbSBarry Smith 547014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSetHelpVersionFunctions(PetscErrorCode (*)(MPI_Comm),PetscErrorCode (*)(MPI_Comm)); 548014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscCommDuplicate(MPI_Comm,MPI_Comm*,int*); 549014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscCommDestroy(MPI_Comm*); 550d382aafbSBarry Smith 551d382aafbSBarry Smith /*MC 552854ce69bSBarry Smith PetscMalloc - Allocates memory, One should use PetscMalloc1() or PetscCalloc1() usually instead of this 553d382aafbSBarry Smith 554eca87e8dSBarry Smith Synopsis: 555aaa7dc30SBarry Smith #include <petscsys.h> 556eca87e8dSBarry Smith PetscErrorCode PetscMalloc(size_t m,void **result) 557eca87e8dSBarry Smith 558eca87e8dSBarry Smith Not Collective 559eca87e8dSBarry Smith 560d382aafbSBarry Smith Input Parameter: 561d382aafbSBarry Smith . m - number of bytes to allocate 562d382aafbSBarry Smith 563d382aafbSBarry Smith Output Parameter: 564d382aafbSBarry Smith . result - memory allocated 565d382aafbSBarry Smith 566d382aafbSBarry Smith Level: beginner 567d382aafbSBarry Smith 56849d7da52SJed Brown Notes: 56949d7da52SJed Brown Memory is always allocated at least double aligned 570d382aafbSBarry Smith 57149d7da52SJed Brown It is safe to allocate size 0 and pass the resulting pointer (which may or may not be NULL) to PetscFree(). 572d382aafbSBarry Smith 573d382aafbSBarry Smith .seealso: PetscFree(), PetscNew() 574d382aafbSBarry Smith 575d382aafbSBarry Smith Concepts: memory allocation 576d382aafbSBarry Smith 577d382aafbSBarry Smith M*/ 57849d7da52SJed Brown #define PetscMalloc(a,b) ((*PetscTrMalloc)((a),__LINE__,PETSC_FUNCTION_NAME,__FILE__,(void**)(b))) 579d382aafbSBarry Smith 580d382aafbSBarry Smith /*MC 581503cfb0cSBarry Smith PetscAddrAlign - Rounds up an address to PETSC_MEMALIGN alignment 582d382aafbSBarry Smith 583d382aafbSBarry Smith Synopsis: 584aaa7dc30SBarry Smith #include <petscsys.h> 585d382aafbSBarry Smith void *PetscAddrAlign(void *addr) 586d382aafbSBarry Smith 587eca87e8dSBarry Smith Not Collective 588eca87e8dSBarry Smith 589eca87e8dSBarry Smith Input Parameters: 590eca87e8dSBarry Smith . addr - address to align (any pointer type) 591eca87e8dSBarry Smith 592d382aafbSBarry Smith Level: developer 593d382aafbSBarry Smith 594d382aafbSBarry Smith .seealso: PetscMallocAlign() 595d382aafbSBarry Smith 596d382aafbSBarry Smith Concepts: memory allocation 597d382aafbSBarry Smith M*/ 598d382aafbSBarry Smith #define PetscAddrAlign(a) (void*)((((PETSC_UINTPTR_T)(a))+(PETSC_MEMALIGN-1)) & ~(PETSC_MEMALIGN-1)) 599d382aafbSBarry Smith 600d382aafbSBarry Smith /*MC 601785e854fSJed Brown PetscMalloc1 - Allocates an array of memory aligned to PETSC_MEMALIGN 602d382aafbSBarry Smith 603eca87e8dSBarry Smith Synopsis: 604aaa7dc30SBarry Smith #include <petscsys.h> 605785e854fSJed Brown PetscErrorCode PetscMalloc1(size_t m1,type **r1) 606785e854fSJed Brown 607785e854fSJed Brown Not Collective 608785e854fSJed Brown 609785e854fSJed Brown Input Parameter: 610785e854fSJed Brown . m1 - number of elements to allocate in 1st chunk (may be zero) 611785e854fSJed Brown 612785e854fSJed Brown Output Parameter: 613785e854fSJed Brown . r1 - memory allocated in first chunk 614785e854fSJed Brown 615785e854fSJed Brown Level: developer 616785e854fSJed Brown 6171795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscCalloc1(), PetscMalloc2() 618785e854fSJed Brown 619785e854fSJed Brown Concepts: memory allocation 620785e854fSJed Brown 621785e854fSJed Brown M*/ 622f0ba7cfcSLisandro Dalcin #define PetscMalloc1(m1,r1) PetscMalloc((m1)*sizeof(**(r1)),r1) 623785e854fSJed Brown 624785e854fSJed Brown /*MC 6251795a4d1SJed Brown PetscCalloc1 - Allocates a cleared (zeroed) array of memory aligned to PETSC_MEMALIGN 6261795a4d1SJed Brown 6271795a4d1SJed Brown Synopsis: 628aaa7dc30SBarry Smith #include <petscsys.h> 6291795a4d1SJed Brown PetscErrorCode PetscCalloc1(size_t m1,type **r1) 6301795a4d1SJed Brown 6311795a4d1SJed Brown Not Collective 6321795a4d1SJed Brown 6331795a4d1SJed Brown Input Parameter: 6341795a4d1SJed Brown . m1 - number of elements to allocate in 1st chunk (may be zero) 6351795a4d1SJed Brown 6361795a4d1SJed Brown Output Parameter: 6371795a4d1SJed Brown . r1 - memory allocated in first chunk 6381795a4d1SJed Brown 6391795a4d1SJed Brown Level: developer 6401795a4d1SJed Brown 6411795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc1(), PetscCalloc2() 6421795a4d1SJed Brown 6431795a4d1SJed Brown Concepts: memory allocation 6441795a4d1SJed Brown 6451795a4d1SJed Brown M*/ 6461795a4d1SJed Brown #define PetscCalloc1(m1,r1) (PetscMalloc1((m1),r1) || PetscMemzero(*(r1),(m1)*sizeof(**(r1)))) 6471795a4d1SJed Brown 6481795a4d1SJed Brown /*MC 649dcca6d9dSJed Brown PetscMalloc2 - Allocates 2 arrays of memory both aligned to PETSC_MEMALIGN 650d382aafbSBarry Smith 651eca87e8dSBarry Smith Synopsis: 652aaa7dc30SBarry Smith #include <petscsys.h> 653dcca6d9dSJed Brown PetscErrorCode PetscMalloc2(size_t m1,type **r1,size_t m2,type **r2) 654eca87e8dSBarry Smith 655eca87e8dSBarry Smith Not Collective 656eca87e8dSBarry Smith 657d382aafbSBarry Smith Input Parameter: 658d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 659dcca6d9dSJed Brown - m2 - number of elements to allocate in 2nd chunk (may be zero) 660d382aafbSBarry Smith 661d382aafbSBarry Smith Output Parameter: 662d382aafbSBarry Smith + r1 - memory allocated in first chunk 663d382aafbSBarry Smith - r2 - memory allocated in second chunk 664d382aafbSBarry Smith 665d382aafbSBarry Smith Level: developer 666d382aafbSBarry Smith 6671795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc1(), PetscCalloc2() 668d382aafbSBarry Smith 669d382aafbSBarry Smith Concepts: memory allocation 670d382aafbSBarry Smith 671d382aafbSBarry Smith M*/ 67220a89254SJed Brown #if !defined(PETSC_USE_MALLOC_COALESCED) 6731d2f33c5SMatthew G. Knepley #define PetscMalloc2(m1,r1,m2,r2) (PetscMalloc1((m1),(r1)) || PetscMalloc1((m2),(r2))) 674d382aafbSBarry Smith #else 675ceba6b73SMatthew G. Knepley #define PetscMalloc2(m1,r1,m2,r2) ((((m1)+(m2)) ? (*(r2) = 0,PetscMalloc((m1)*sizeof(**(r1))+(m2)*sizeof(**(r2))+(PETSC_MEMALIGN-1),r1)) : 0) \ 676ceba6b73SMatthew G. Knepley || (*(void**)(r2) = PetscAddrAlign(*(r1)+(m1)),0) \ 6773589d31bSMatthew G. Knepley || (!(m1) ? (*(r1) = 0,0) : 0) || (!(m2) ? (*(r2) = 0,0) : 0)) 678d382aafbSBarry Smith #endif 679d382aafbSBarry Smith 680d382aafbSBarry Smith /*MC 6811795a4d1SJed Brown PetscCalloc2 - Allocates 2 cleared (zeroed) arrays of memory both aligned to PETSC_MEMALIGN 682d382aafbSBarry Smith 683eca87e8dSBarry Smith Synopsis: 684aaa7dc30SBarry Smith #include <petscsys.h> 6851795a4d1SJed Brown PetscErrorCode PetscCalloc2(size_t m1,type **r1,size_t m2,type **r2) 686eca87e8dSBarry Smith 687eca87e8dSBarry Smith Not Collective 688eca87e8dSBarry Smith 689d382aafbSBarry Smith Input Parameter: 690d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 6911795a4d1SJed Brown - m2 - number of elements to allocate in 2nd chunk (may be zero) 6921795a4d1SJed Brown 6931795a4d1SJed Brown Output Parameter: 6941795a4d1SJed Brown + r1 - memory allocated in first chunk 6951795a4d1SJed Brown - r2 - memory allocated in second chunk 6961795a4d1SJed Brown 6971795a4d1SJed Brown Level: developer 6981795a4d1SJed Brown 6991795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscCalloc1(), PetscMalloc2() 7001795a4d1SJed Brown 7011795a4d1SJed Brown Concepts: memory allocation 7021795a4d1SJed Brown M*/ 7031795a4d1SJed Brown #define PetscCalloc2(m1,r1,m2,r2) (PetscMalloc2((m1),(r1),(m2),(r2)) || PetscMemzero(*(r1),(m1)*sizeof(**(r1))) || PetscMemzero(*(r2),(m2)*sizeof(**(r2)))) 7041795a4d1SJed Brown 7051795a4d1SJed Brown /*MC 706dcca6d9dSJed Brown PetscMalloc3 - Allocates 3 arrays of memory, all aligned to PETSC_MEMALIGN 707d382aafbSBarry Smith 708d382aafbSBarry Smith Synopsis: 709aaa7dc30SBarry Smith #include <petscsys.h> 710dcca6d9dSJed Brown PetscErrorCode PetscMalloc3(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3) 711d382aafbSBarry Smith 712d382aafbSBarry Smith Not Collective 713d382aafbSBarry Smith 714d382aafbSBarry Smith Input Parameter: 715d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 716d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 717dcca6d9dSJed Brown - m3 - number of elements to allocate in 3rd chunk (may be zero) 718d382aafbSBarry Smith 719d382aafbSBarry Smith Output Parameter: 720d382aafbSBarry Smith + r1 - memory allocated in first chunk 721d382aafbSBarry Smith . r2 - memory allocated in second chunk 722d382aafbSBarry Smith - r3 - memory allocated in third chunk 723d382aafbSBarry Smith 724d382aafbSBarry Smith Level: developer 725d382aafbSBarry Smith 7261795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscCalloc3(), PetscFree3() 727d382aafbSBarry Smith 728d382aafbSBarry Smith Concepts: memory allocation 729d382aafbSBarry Smith 730d382aafbSBarry Smith M*/ 73120a89254SJed Brown #if !defined(PETSC_USE_MALLOC_COALESCED) 7321d2f33c5SMatthew G. Knepley #define PetscMalloc3(m1,r1,m2,r2,m3,r3) (PetscMalloc1((m1),(r1)) || PetscMalloc1((m2),(r2)) || PetscMalloc1((m3),(r3))) 733d382aafbSBarry Smith #else 734ceba6b73SMatthew G. Knepley #define PetscMalloc3(m1,r1,m2,r2,m3,r3) ((((m1)+(m2)+(m3)) ? (*(r2) = 0,*(r3) = 0,PetscMalloc((m1)*sizeof(**(r1))+(m2)*sizeof(**(r2))+(m3)*sizeof(**(r3))+2*(PETSC_MEMALIGN-1),r1)) : 0) \ 735278791cbSMatthew G. Knepley || (*(void**)(r2) = PetscAddrAlign(*(r1)+(m1)),*(void**)(r3) = PetscAddrAlign(*(r2)+(m2)),0) \ 7363589d31bSMatthew G. Knepley || (!(m1) ? (*(r1) = 0,0) : 0) || (!(m2) ? (*(r2) = 0,0) : 0) || (!(m3) ? (*(r3) = 0,0) : 0)) 737d382aafbSBarry Smith #endif 738d382aafbSBarry Smith 739d382aafbSBarry Smith /*MC 7401795a4d1SJed Brown PetscCalloc3 - Allocates 3 cleared (zeroed) arrays of memory, all aligned to PETSC_MEMALIGN 741d382aafbSBarry Smith 742eca87e8dSBarry Smith Synopsis: 743aaa7dc30SBarry Smith #include <petscsys.h> 7441795a4d1SJed Brown PetscErrorCode PetscCalloc3(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3) 745eca87e8dSBarry Smith 746eca87e8dSBarry Smith Not Collective 747eca87e8dSBarry Smith 748d382aafbSBarry Smith Input Parameter: 749d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 750d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 7511795a4d1SJed Brown - m3 - number of elements to allocate in 3rd chunk (may be zero) 7521795a4d1SJed Brown 7531795a4d1SJed Brown Output Parameter: 7541795a4d1SJed Brown + r1 - memory allocated in first chunk 7551795a4d1SJed Brown . r2 - memory allocated in second chunk 7561795a4d1SJed Brown - r3 - memory allocated in third chunk 7571795a4d1SJed Brown 7581795a4d1SJed Brown Level: developer 7591795a4d1SJed Brown 7601795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscCalloc2(), PetscMalloc3(), PetscFree3() 7611795a4d1SJed Brown 7621795a4d1SJed Brown Concepts: memory allocation 7631795a4d1SJed Brown M*/ 7641795a4d1SJed Brown #define PetscCalloc3(m1,r1,m2,r2,m3,r3) \ 7651795a4d1SJed Brown (PetscMalloc3((m1),(r1),(m2),(r2),(m3),(r3)) \ 7661795a4d1SJed Brown || PetscMemzero(*(r1),(m1)*sizeof(**(r1))) || PetscMemzero(*(r2),(m2)*sizeof(**(r2))) || PetscMemzero(*(r3),(m3)*sizeof(**(r3)))) 7671795a4d1SJed Brown 7681795a4d1SJed Brown /*MC 769dcca6d9dSJed Brown PetscMalloc4 - Allocates 4 arrays of memory, all aligned to PETSC_MEMALIGN 770d382aafbSBarry Smith 771d382aafbSBarry Smith Synopsis: 772aaa7dc30SBarry Smith #include <petscsys.h> 773dcca6d9dSJed Brown PetscErrorCode PetscMalloc4(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3,size_t m4,type **r4) 774d382aafbSBarry Smith 775d382aafbSBarry Smith Not Collective 776d382aafbSBarry Smith 777d382aafbSBarry Smith Input Parameter: 778d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 779d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 780d382aafbSBarry Smith . m3 - number of elements to allocate in 3rd chunk (may be zero) 781dcca6d9dSJed Brown - m4 - number of elements to allocate in 4th chunk (may be zero) 782d382aafbSBarry Smith 783d382aafbSBarry Smith Output Parameter: 784d382aafbSBarry Smith + r1 - memory allocated in first chunk 785d382aafbSBarry Smith . r2 - memory allocated in second chunk 786d382aafbSBarry Smith . r3 - memory allocated in third chunk 787d382aafbSBarry Smith - r4 - memory allocated in fourth chunk 788d382aafbSBarry Smith 789d382aafbSBarry Smith Level: developer 790d382aafbSBarry Smith 7911795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscCalloc4(), PetscFree4() 792d382aafbSBarry Smith 793d382aafbSBarry Smith Concepts: memory allocation 794d382aafbSBarry Smith 795d382aafbSBarry Smith M*/ 79620a89254SJed Brown #if !defined(PETSC_USE_MALLOC_COALESCED) 7971d2f33c5SMatthew G. Knepley #define PetscMalloc4(m1,r1,m2,r2,m3,r3,m4,r4) (PetscMalloc1((m1),(r1)) || PetscMalloc1((m2),(r2)) || PetscMalloc1((m3),(r3)) || PetscMalloc1((m4),(r4))) 798d382aafbSBarry Smith #else 799dcca6d9dSJed Brown #define PetscMalloc4(m1,r1,m2,r2,m3,r3,m4,r4) \ 800ceba6b73SMatthew G. Knepley ((((m1)+(m2)+(m3)+(m4)) ? (*(r2) = 0, *(r3) = 0, *(r4) = 0,PetscMalloc((m1)*sizeof(**(r1))+(m2)*sizeof(**(r2))+(m3)*sizeof(**(r3))+(m4)*sizeof(**(r4))+3*(PETSC_MEMALIGN-1),r1)) : 0) \ 801278791cbSMatthew G. Knepley || (*(void**)(r2) = PetscAddrAlign(*(r1)+(m1)),*(void**)(r3) = PetscAddrAlign(*(r2)+(m2)),*(void**)(r4) = PetscAddrAlign(*(r3)+(m3)),0) \ 8023589d31bSMatthew G. Knepley || (!(m1) ? (*(r1) = 0,0) : 0) || (!(m2) ? (*(r2) = 0,0) : 0) || (!(m3) ? (*(r3) = 0,0) : 0) || (!(m4) ? (*(r4) = 0,0) : 0)) 803d382aafbSBarry Smith #endif 804d382aafbSBarry Smith 805d382aafbSBarry Smith /*MC 8061795a4d1SJed Brown PetscCalloc4 - Allocates 4 cleared (zeroed) arrays of memory, all aligned to PETSC_MEMALIGN 807d382aafbSBarry Smith 808eca87e8dSBarry Smith Synopsis: 809aaa7dc30SBarry Smith #include <petscsys.h> 8101795a4d1SJed Brown PetscErrorCode PetscCalloc4(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3,size_t m4,type **r4) 811eca87e8dSBarry Smith 812eca87e8dSBarry Smith Not Collective 813eca87e8dSBarry Smith 814d382aafbSBarry Smith Input Parameter: 815d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 816d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 817d382aafbSBarry Smith . m3 - number of elements to allocate in 3rd chunk (may be zero) 8181795a4d1SJed Brown - m4 - number of elements to allocate in 4th chunk (may be zero) 8191795a4d1SJed Brown 8201795a4d1SJed Brown Output Parameter: 8211795a4d1SJed Brown + r1 - memory allocated in first chunk 8221795a4d1SJed Brown . r2 - memory allocated in second chunk 8231795a4d1SJed Brown . r3 - memory allocated in third chunk 8241795a4d1SJed Brown - r4 - memory allocated in fourth chunk 8251795a4d1SJed Brown 8261795a4d1SJed Brown Level: developer 8271795a4d1SJed Brown 8281795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscCalloc4(), PetscFree4() 8291795a4d1SJed Brown 8301795a4d1SJed Brown Concepts: memory allocation 8311795a4d1SJed Brown 8321795a4d1SJed Brown M*/ 8331795a4d1SJed Brown #define PetscCalloc4(m1,r1,m2,r2,m3,r3,m4,r4) \ 8341795a4d1SJed Brown (PetscMalloc4(m1,r1,m2,r2,m3,r3,m4,r4) \ 8351795a4d1SJed Brown || PetscMemzero(*(r1),(m1)*sizeof(**(r1))) || PetscMemzero(*(r2),(m2)*sizeof(**(r2))) || PetscMemzero(*(r3),(m3)*sizeof(**(r3))) \ 8361795a4d1SJed Brown || PetscMemzero(*(r4),(m4)*sizeof(**(r4)))) 8371795a4d1SJed Brown 8381795a4d1SJed Brown /*MC 839dcca6d9dSJed Brown PetscMalloc5 - Allocates 5 arrays of memory, all aligned to PETSC_MEMALIGN 840d382aafbSBarry Smith 841d382aafbSBarry Smith Synopsis: 842aaa7dc30SBarry Smith #include <petscsys.h> 843dcca6d9dSJed Brown PetscErrorCode PetscMalloc5(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3,size_t m4,type **r4,size_t m5,type **r5) 844d382aafbSBarry Smith 845d382aafbSBarry Smith Not Collective 846d382aafbSBarry Smith 847d382aafbSBarry Smith Input Parameter: 848d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 849d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 850d382aafbSBarry Smith . m3 - number of elements to allocate in 3rd chunk (may be zero) 851d382aafbSBarry Smith . m4 - number of elements to allocate in 4th chunk (may be zero) 852dcca6d9dSJed Brown - m5 - number of elements to allocate in 5th chunk (may be zero) 853d382aafbSBarry Smith 854d382aafbSBarry Smith Output Parameter: 855d382aafbSBarry Smith + r1 - memory allocated in first chunk 856d382aafbSBarry Smith . r2 - memory allocated in second chunk 857d382aafbSBarry Smith . r3 - memory allocated in third chunk 858d382aafbSBarry Smith . r4 - memory allocated in fourth chunk 859d382aafbSBarry Smith - r5 - memory allocated in fifth chunk 860d382aafbSBarry Smith 861d382aafbSBarry Smith Level: developer 862d382aafbSBarry Smith 8631795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscCalloc5(), PetscFree5() 864d382aafbSBarry Smith 865d382aafbSBarry Smith Concepts: memory allocation 866d382aafbSBarry Smith 867d382aafbSBarry Smith M*/ 86820a89254SJed Brown #if !defined(PETSC_USE_MALLOC_COALESCED) 8691d2f33c5SMatthew G. Knepley #define PetscMalloc5(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5) (PetscMalloc1((m1),(r1)) || PetscMalloc1((m2),(r2)) || PetscMalloc1((m3),(r3)) || PetscMalloc1((m4),(r4)) || PetscMalloc1((m5),(r5))) 870d382aafbSBarry Smith #else 871dcca6d9dSJed Brown #define PetscMalloc5(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5) \ 872ceba6b73SMatthew G. Knepley ((((m1)+(m2)+(m3)+(m4)+(m5)) ? (*(r2) = 0, *(r3) = 0, *(r4) = 0,*(r5) = 0,PetscMalloc((m1)*sizeof(**(r1))+(m2)*sizeof(**(r2))+(m3)*sizeof(**(r3))+(m4)*sizeof(**(r4))+(m5)*sizeof(**(r5))+4*(PETSC_MEMALIGN-1),r1)) : 0) \ 873278791cbSMatthew G. Knepley || (*(void**)(r2) = PetscAddrAlign(*(r1)+(m1)),*(void**)(r3) = PetscAddrAlign(*(r2)+(m2)),*(void**)(r4) = PetscAddrAlign(*(r3)+(m3)),*(void**)(r5) = PetscAddrAlign(*(r4)+(m4)),0) \ 8743589d31bSMatthew G. Knepley || (!(m1) ? (*(r1) = 0,0) : 0) || (!(m2) ? (*(r2) = 0,0) : 0) || (!(m3) ? (*(r3) = 0,0) : 0) || (!(m4) ? (*(r4) = 0,0) : 0) || (!(m5) ? (*(r5) = 0,0) : 0)) 875d382aafbSBarry Smith #endif 876d382aafbSBarry Smith 877d382aafbSBarry Smith /*MC 8781795a4d1SJed Brown PetscCalloc5 - Allocates 5 cleared (zeroed) arrays of memory, all aligned to PETSC_MEMALIGN 879d382aafbSBarry Smith 880eca87e8dSBarry Smith Synopsis: 881aaa7dc30SBarry Smith #include <petscsys.h> 8821795a4d1SJed Brown PetscErrorCode PetscCalloc5(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3,size_t m4,type **r4,size_t m5,type **r5) 883eca87e8dSBarry Smith 884eca87e8dSBarry Smith Not Collective 885eca87e8dSBarry Smith 886d382aafbSBarry Smith Input Parameter: 887d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 888d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 889d382aafbSBarry Smith . m3 - number of elements to allocate in 3rd chunk (may be zero) 890d382aafbSBarry Smith . m4 - number of elements to allocate in 4th chunk (may be zero) 8911795a4d1SJed Brown - m5 - number of elements to allocate in 5th chunk (may be zero) 8921795a4d1SJed Brown 8931795a4d1SJed Brown Output Parameter: 8941795a4d1SJed Brown + r1 - memory allocated in first chunk 8951795a4d1SJed Brown . r2 - memory allocated in second chunk 8961795a4d1SJed Brown . r3 - memory allocated in third chunk 8971795a4d1SJed Brown . r4 - memory allocated in fourth chunk 8981795a4d1SJed Brown - r5 - memory allocated in fifth chunk 8991795a4d1SJed Brown 9001795a4d1SJed Brown Level: developer 9011795a4d1SJed Brown 9021795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc5(), PetscFree5() 9031795a4d1SJed Brown 9041795a4d1SJed Brown Concepts: memory allocation 9051795a4d1SJed Brown 9061795a4d1SJed Brown M*/ 9071795a4d1SJed Brown #define PetscCalloc5(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5) \ 9081795a4d1SJed Brown (PetscMalloc5(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5) \ 9091795a4d1SJed Brown || PetscMemzero(*(r1),(m1)*sizeof(**(r1))) || PetscMemzero(*(r2),(m2)*sizeof(**(r2))) || PetscMemzero(*(r3),(m3)*sizeof(**(r3))) \ 9101795a4d1SJed Brown || PetscMemzero(*(r4),(m4)*sizeof(**(r4))) || PetscMemzero(*(r5),(m5)*sizeof(**(r5)))) 911d382aafbSBarry Smith 912d382aafbSBarry Smith /*MC 913dcca6d9dSJed Brown PetscMalloc6 - Allocates 6 arrays of memory, all aligned to PETSC_MEMALIGN 914d382aafbSBarry Smith 915d382aafbSBarry Smith Synopsis: 916aaa7dc30SBarry Smith #include <petscsys.h> 917dcca6d9dSJed Brown PetscErrorCode PetscMalloc6(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3,size_t m4,type **r4,size_t m5,type **r5,size_t m6,type **r6) 918d382aafbSBarry Smith 919d382aafbSBarry Smith Not Collective 920d382aafbSBarry Smith 921d382aafbSBarry Smith Input Parameter: 922d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 923d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 924d382aafbSBarry Smith . m3 - number of elements to allocate in 3rd chunk (may be zero) 925d382aafbSBarry Smith . m4 - number of elements to allocate in 4th chunk (may be zero) 926d382aafbSBarry Smith . m5 - number of elements to allocate in 5th chunk (may be zero) 927dcca6d9dSJed Brown - m6 - number of elements to allocate in 6th chunk (may be zero) 928d382aafbSBarry Smith 929d382aafbSBarry Smith Output Parameter: 930d382aafbSBarry Smith + r1 - memory allocated in first chunk 931d382aafbSBarry Smith . r2 - memory allocated in second chunk 932d382aafbSBarry Smith . r3 - memory allocated in third chunk 933d382aafbSBarry Smith . r4 - memory allocated in fourth chunk 934d382aafbSBarry Smith . r5 - memory allocated in fifth chunk 935d382aafbSBarry Smith - r6 - memory allocated in sixth chunk 936d382aafbSBarry Smith 937d382aafbSBarry Smith Level: developer 938d382aafbSBarry Smith 9391795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscCalloc6(), PetscFree3(), PetscFree4(), PetscFree5(), PetscFree6() 940d382aafbSBarry Smith 941d382aafbSBarry Smith Concepts: memory allocation 942d382aafbSBarry Smith 943d382aafbSBarry Smith M*/ 94420a89254SJed Brown #if !defined(PETSC_USE_MALLOC_COALESCED) 9451d2f33c5SMatthew G. Knepley #define PetscMalloc6(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5,m6,r6) (PetscMalloc1((m1),(r1)) || PetscMalloc1((m2),(r2)) || PetscMalloc1((m3),(r3)) || PetscMalloc1((m4),(r4)) || PetscMalloc1((m5),(r5)) || PetscMalloc1((m6),(r6))) 946d382aafbSBarry Smith #else 947dcca6d9dSJed Brown #define PetscMalloc6(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5,m6,r6) \ 948ceba6b73SMatthew G. Knepley ((((m1)+(m2)+(m3)+(m4)+(m5)+(m6)) ? (*(r2) = 0, *(r3) = 0, *(r4) = 0,*(r5) = 0,*(r6) = 0,PetscMalloc((m1)*sizeof(**(r1))+(m2)*sizeof(**(r2))+(m3)*sizeof(**(r3))+(m4)*sizeof(**(r4))+(m5)*sizeof(**(r5))+(m6)*sizeof(**(r6))+5*(PETSC_MEMALIGN-1),r1)) : 0) \ 949278791cbSMatthew G. Knepley || (*(void**)(r2) = PetscAddrAlign(*(r1)+(m1)),*(void**)(r3) = PetscAddrAlign(*(r2)+(m2)),*(void**)(r4) = PetscAddrAlign(*(r3)+(m3)),*(void**)(r5) = PetscAddrAlign(*(r4)+(m4)),*(void**)(r6) = PetscAddrAlign(*(r5)+(m5)),0) \ 9503589d31bSMatthew G. Knepley || (!(m1) ? (*(r1) = 0,0) : 0) || (!(m2) ? (*(r2) = 0,0) : 0) || (!(m3) ? (*(r3) = 0,0) : 0) || (!(m4) ? (*(r4) = 0,0) : 0) || (!(m5) ? (*(r5) = 0,0) : 0) || (!(m6) ? (*(r6) = 0,0) : 0)) 951d382aafbSBarry Smith #endif 952d382aafbSBarry Smith 953d382aafbSBarry Smith /*MC 9541795a4d1SJed Brown PetscCalloc6 - Allocates 6 cleared (zeroed) arrays of memory, all aligned to PETSC_MEMALIGN 955d382aafbSBarry Smith 956eca87e8dSBarry Smith Synopsis: 957aaa7dc30SBarry Smith #include <petscsys.h> 9581795a4d1SJed Brown PetscErrorCode PetscCalloc6(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3,size_t m4,type **r4,size_t m5,type **r5,size_t m6,type **r6) 959eca87e8dSBarry Smith 960eca87e8dSBarry Smith Not Collective 961eca87e8dSBarry Smith 962d382aafbSBarry Smith Input Parameter: 963d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 964d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 965d382aafbSBarry Smith . m3 - number of elements to allocate in 3rd chunk (may be zero) 966d382aafbSBarry Smith . m4 - number of elements to allocate in 4th chunk (may be zero) 967d382aafbSBarry Smith . m5 - number of elements to allocate in 5th chunk (may be zero) 9681795a4d1SJed Brown - m6 - number of elements to allocate in 6th chunk (may be zero) 9691795a4d1SJed Brown 9701795a4d1SJed Brown Output Parameter: 9711795a4d1SJed Brown + r1 - memory allocated in first chunk 9721795a4d1SJed Brown . r2 - memory allocated in second chunk 9731795a4d1SJed Brown . r3 - memory allocated in third chunk 9741795a4d1SJed Brown . r4 - memory allocated in fourth chunk 9751795a4d1SJed Brown . r5 - memory allocated in fifth chunk 9761795a4d1SJed Brown - r6 - memory allocated in sixth chunk 9771795a4d1SJed Brown 9781795a4d1SJed Brown Level: developer 9791795a4d1SJed Brown 9801795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscMalloc6(), PetscFree6() 9811795a4d1SJed Brown 9821795a4d1SJed Brown Concepts: memory allocation 9831795a4d1SJed Brown M*/ 9841795a4d1SJed Brown #define PetscCalloc6(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5,m6,r6) \ 9851795a4d1SJed Brown (PetscMalloc6(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5,m6,r6) \ 9861795a4d1SJed Brown || PetscMemzero(*(r1),(m1)*sizeof(**(r1))) || PetscMemzero(*(r2),(m2)*sizeof(**(r2))) || PetscMemzero(*(r3),(m3)*sizeof(**(r3))) \ 9871795a4d1SJed Brown || PetscMemzero(*(r4),(m4)*sizeof(**(r4))) || PetscMemzero(*(r5),(m5)*sizeof(**(r5))) || PetscMemzero(*(r6),(m6)*sizeof(**(r6)))) 9881795a4d1SJed Brown 9891795a4d1SJed Brown /*MC 990dcca6d9dSJed Brown PetscMalloc7 - Allocates 7 arrays of memory, all aligned to PETSC_MEMALIGN 991d382aafbSBarry Smith 992d382aafbSBarry Smith Synopsis: 993aaa7dc30SBarry Smith #include <petscsys.h> 994dcca6d9dSJed Brown PetscErrorCode PetscMalloc7(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3,size_t m4,type **r4,size_t m5,type **r5,size_t m6,type **r6,size_t m7,type **r7) 995d382aafbSBarry Smith 996d382aafbSBarry Smith Not Collective 997d382aafbSBarry Smith 998d382aafbSBarry Smith Input Parameter: 999d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 1000d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 1001d382aafbSBarry Smith . m3 - number of elements to allocate in 3rd chunk (may be zero) 1002d382aafbSBarry Smith . m4 - number of elements to allocate in 4th chunk (may be zero) 1003d382aafbSBarry Smith . m5 - number of elements to allocate in 5th chunk (may be zero) 1004d382aafbSBarry Smith . m6 - number of elements to allocate in 6th chunk (may be zero) 1005dcca6d9dSJed Brown - m7 - number of elements to allocate in 7th chunk (may be zero) 1006d382aafbSBarry Smith 1007d382aafbSBarry Smith Output Parameter: 1008d382aafbSBarry Smith + r1 - memory allocated in first chunk 1009d382aafbSBarry Smith . r2 - memory allocated in second chunk 1010d382aafbSBarry Smith . r3 - memory allocated in third chunk 1011d382aafbSBarry Smith . r4 - memory allocated in fourth chunk 1012d382aafbSBarry Smith . r5 - memory allocated in fifth chunk 1013d382aafbSBarry Smith . r6 - memory allocated in sixth chunk 1014eca87e8dSBarry Smith - r7 - memory allocated in seventh chunk 1015d382aafbSBarry Smith 1016d382aafbSBarry Smith Level: developer 1017d382aafbSBarry Smith 10181795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscCalloc7(), PetscFree7() 1019d382aafbSBarry Smith 1020d382aafbSBarry Smith Concepts: memory allocation 1021d382aafbSBarry Smith 1022d382aafbSBarry Smith M*/ 102320a89254SJed Brown #if !defined(PETSC_USE_MALLOC_COALESCED) 10241d2f33c5SMatthew G. Knepley #define PetscMalloc7(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5,m6,r6,m7,r7) (PetscMalloc1((m1),(r1)) || PetscMalloc1((m2),(r2)) || PetscMalloc1((m3),(r3)) || PetscMalloc1((m4),(r4)) || PetscMalloc1((m5),(r5)) || PetscMalloc1((m6),(r6)) || PetscMalloc1((m7),(r7))) 1025d382aafbSBarry Smith #else 1026dcca6d9dSJed Brown #define PetscMalloc7(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5,m6,r6,m7,r7) \ 1027ceba6b73SMatthew G. Knepley ((((m1)+(m2)+(m3)+(m4)+(m5)+(m6)+(m7)) ? (*(r2) = 0, *(r3) = 0, *(r4) = 0,*(r5) = 0,*(r6) = 0,*(r7) = 0,PetscMalloc((m1)*sizeof(**(r1))+(m2)*sizeof(**(r2))+(m3)*sizeof(**(r3))+(m4)*sizeof(**(r4))+(m5)*sizeof(**(r5))+(m6)*sizeof(**(r6))+(m7)*sizeof(**(r7))+6*(PETSC_MEMALIGN-1),r1)) : 0) \ 1028278791cbSMatthew G. Knepley || (*(void**)(r2) = PetscAddrAlign(*(r1)+(m1)),*(void**)(r3) = PetscAddrAlign(*(r2)+(m2)),*(void**)(r4) = PetscAddrAlign(*(r3)+(m3)),*(void**)(r5) = PetscAddrAlign(*(r4)+(m4)),*(void**)(r6) = PetscAddrAlign(*(r5)+(m5)),*(void**)(r7) = PetscAddrAlign(*(r6)+(m6)),0) \ 10293589d31bSMatthew G. Knepley || (!(m1) ? (*(r1) = 0,0) : 0) || (!(m2) ? (*(r2) = 0,0) : 0) || (!(m3) ? (*(r3) = 0,0) : 0) || (!(m4) ? (*(r4) = 0,0) : 0) || (!(m5) ? (*(r5) = 0,0) : 0) || (!(m6) ? (*(r6) = 0,0) : 0) || (!(m7) ? (*(r7) = 0,0) : 0)) 1030d382aafbSBarry Smith #endif 1031d382aafbSBarry Smith 1032d382aafbSBarry Smith /*MC 10331795a4d1SJed Brown PetscCalloc7 - Allocates 7 cleared (zeroed) arrays of memory, all aligned to PETSC_MEMALIGN 10341795a4d1SJed Brown 10351795a4d1SJed Brown Synopsis: 1036aaa7dc30SBarry Smith #include <petscsys.h> 10371795a4d1SJed Brown PetscErrorCode PetscCalloc7(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3,size_t m4,type **r4,size_t m5,type **r5,size_t m6,type **r6,size_t m7,type **r7) 10381795a4d1SJed Brown 10391795a4d1SJed Brown Not Collective 10401795a4d1SJed Brown 10411795a4d1SJed Brown Input Parameter: 10421795a4d1SJed Brown + m1 - number of elements to allocate in 1st chunk (may be zero) 10431795a4d1SJed Brown . m2 - number of elements to allocate in 2nd chunk (may be zero) 10441795a4d1SJed Brown . m3 - number of elements to allocate in 3rd chunk (may be zero) 10451795a4d1SJed Brown . m4 - number of elements to allocate in 4th chunk (may be zero) 10461795a4d1SJed Brown . m5 - number of elements to allocate in 5th chunk (may be zero) 10471795a4d1SJed Brown . m6 - number of elements to allocate in 6th chunk (may be zero) 10481795a4d1SJed Brown - m7 - number of elements to allocate in 7th chunk (may be zero) 10491795a4d1SJed Brown 10501795a4d1SJed Brown Output Parameter: 10511795a4d1SJed Brown + r1 - memory allocated in first chunk 10521795a4d1SJed Brown . r2 - memory allocated in second chunk 10531795a4d1SJed Brown . r3 - memory allocated in third chunk 10541795a4d1SJed Brown . r4 - memory allocated in fourth chunk 10551795a4d1SJed Brown . r5 - memory allocated in fifth chunk 10561795a4d1SJed Brown . r6 - memory allocated in sixth chunk 10571795a4d1SJed Brown - r7 - memory allocated in seventh chunk 10581795a4d1SJed Brown 10591795a4d1SJed Brown Level: developer 10601795a4d1SJed Brown 10611795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscMalloc7(), PetscFree7() 10621795a4d1SJed Brown 10631795a4d1SJed Brown Concepts: memory allocation 10641795a4d1SJed Brown M*/ 10651795a4d1SJed Brown #define PetscCalloc7(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5,m6,r6,m7,r7) \ 10667ba0cc92SJed Brown (PetscMalloc7(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5,m6,r6,m7,r7) \ 10671795a4d1SJed Brown || PetscMemzero(*(r1),(m1)*sizeof(**(r1))) || PetscMemzero(*(r2),(m2)*sizeof(**(r2))) || PetscMemzero(*(r3),(m3)*sizeof(**(r3))) \ 10681795a4d1SJed Brown || PetscMemzero(*(r4),(m4)*sizeof(**(r4))) || PetscMemzero(*(r5),(m5)*sizeof(**(r5))) || PetscMemzero(*(r6),(m6)*sizeof(**(r6))) \ 10697ba0cc92SJed Brown || PetscMemzero(*(r7),(m7)*sizeof(**(r7)))) 10701795a4d1SJed Brown 10711795a4d1SJed Brown /*MC 1072503cfb0cSBarry Smith PetscNew - Allocates memory of a particular type, zeros the memory! Aligned to PETSC_MEMALIGN 1073d382aafbSBarry Smith 1074eca87e8dSBarry Smith Synopsis: 1075aaa7dc30SBarry Smith #include <petscsys.h> 1076b00a9115SJed Brown PetscErrorCode PetscNew(type **result) 1077eca87e8dSBarry Smith 1078eca87e8dSBarry Smith Not Collective 1079eca87e8dSBarry Smith 1080d382aafbSBarry Smith Output Parameter: 1081b00a9115SJed Brown . result - memory allocated, sized to match pointer type 1082d382aafbSBarry Smith 1083d382aafbSBarry Smith Level: beginner 1084d382aafbSBarry Smith 1085ad0619ddSBarry Smith .seealso: PetscFree(), PetscMalloc(), PetscNewLog() 1086d382aafbSBarry Smith 1087d382aafbSBarry Smith Concepts: memory allocation 1088d382aafbSBarry Smith 1089d382aafbSBarry Smith M*/ 1090b00a9115SJed Brown #define PetscNew(b) PetscCalloc1(1,(b)) 1091ad0619ddSBarry Smith 1092ad0619ddSBarry Smith /*MC 1093b00a9115SJed Brown PetscNewLog - Allocates memory of a type matching pointer, zeros the memory! Aligned to PETSC_MEMALIGN. Associates the memory allocated 1094ad0619ddSBarry Smith with the given object using PetscLogObjectMemory(). 1095ad0619ddSBarry Smith 1096ad0619ddSBarry Smith Synopsis: 1097aaa7dc30SBarry Smith #include <petscsys.h> 1098b00a9115SJed Brown PetscErrorCode PetscNewLog(PetscObject obj,type **result) 1099ad0619ddSBarry Smith 1100ad0619ddSBarry Smith Not Collective 1101ad0619ddSBarry Smith 1102ad0619ddSBarry Smith Input Parameter: 1103b00a9115SJed Brown . obj - object memory is logged to 1104ad0619ddSBarry Smith 1105ad0619ddSBarry Smith Output Parameter: 1106b00a9115SJed Brown . result - memory allocated, sized to match pointer type 1107ad0619ddSBarry Smith 1108ad0619ddSBarry Smith Level: developer 1109ad0619ddSBarry Smith 1110ad0619ddSBarry Smith .seealso: PetscFree(), PetscMalloc(), PetscNew(), PetscLogObjectMemory() 1111ad0619ddSBarry Smith 1112ad0619ddSBarry Smith Concepts: memory allocation 1113ad0619ddSBarry Smith 1114ad0619ddSBarry Smith M*/ 1115d12f57a0SLisandro Dalcin #define PetscNewLog(o,b) (PetscNew((b)) || PetscLogObjectMemory((PetscObject)o,sizeof(**(b)))) 1116d382aafbSBarry Smith 1117d382aafbSBarry Smith /*MC 1118d382aafbSBarry Smith PetscFree - Frees memory 1119d382aafbSBarry Smith 1120eca87e8dSBarry Smith Synopsis: 1121aaa7dc30SBarry Smith #include <petscsys.h> 1122eca87e8dSBarry Smith PetscErrorCode PetscFree(void *memory) 1123eca87e8dSBarry Smith 1124eca87e8dSBarry Smith Not Collective 1125eca87e8dSBarry Smith 1126d382aafbSBarry Smith Input Parameter: 1127d382aafbSBarry Smith . memory - memory to free (the pointer is ALWAYS set to 0 upon sucess) 1128d382aafbSBarry Smith 1129d382aafbSBarry Smith Level: beginner 1130d382aafbSBarry Smith 113149d7da52SJed Brown Notes: 113249d7da52SJed Brown Memory must have been obtained with PetscNew() or PetscMalloc(). 113349d7da52SJed Brown It is safe to call PetscFree() on a NULL pointer. 1134d382aafbSBarry Smith 1135d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscFreeVoid() 1136d382aafbSBarry Smith 1137d382aafbSBarry Smith Concepts: memory allocation 1138d382aafbSBarry Smith 1139d382aafbSBarry Smith M*/ 114049d7da52SJed Brown #define PetscFree(a) ((*PetscTrFree)((void*)(a),__LINE__,PETSC_FUNCTION_NAME,__FILE__) || ((a) = 0,0)) 1141d382aafbSBarry Smith 1142d382aafbSBarry Smith /*MC 1143d382aafbSBarry Smith PetscFreeVoid - Frees memory 1144d382aafbSBarry Smith 1145d382aafbSBarry Smith Synopsis: 1146aaa7dc30SBarry Smith #include <petscsys.h> 1147d382aafbSBarry Smith void PetscFreeVoid(void *memory) 1148d382aafbSBarry Smith 1149eca87e8dSBarry Smith Not Collective 1150eca87e8dSBarry Smith 1151eca87e8dSBarry Smith Input Parameter: 1152eca87e8dSBarry Smith . memory - memory to free 1153eca87e8dSBarry Smith 1154d382aafbSBarry Smith Level: beginner 1155d382aafbSBarry Smith 1156d382aafbSBarry Smith Notes: This is different from PetscFree() in that no error code is returned 1157d382aafbSBarry Smith 1158d382aafbSBarry Smith .seealso: PetscFree(), PetscNew(), PetscMalloc() 1159d382aafbSBarry Smith 1160d382aafbSBarry Smith Concepts: memory allocation 1161d382aafbSBarry Smith 1162d382aafbSBarry Smith M*/ 1163efca3c55SSatish Balay #define PetscFreeVoid(a) ((*PetscTrFree)((a),__LINE__,PETSC_FUNCTION_NAME,__FILE__),(a) = 0) 1164d382aafbSBarry Smith 1165d382aafbSBarry Smith 1166d382aafbSBarry Smith /*MC 1167d382aafbSBarry Smith PetscFree2 - Frees 2 chunks of memory obtained with PetscMalloc2() 1168d382aafbSBarry Smith 1169eca87e8dSBarry Smith Synopsis: 1170aaa7dc30SBarry Smith #include <petscsys.h> 1171eca87e8dSBarry Smith PetscErrorCode PetscFree2(void *memory1,void *memory2) 1172eca87e8dSBarry Smith 1173eca87e8dSBarry Smith Not Collective 1174eca87e8dSBarry Smith 1175d382aafbSBarry Smith Input Parameter: 1176d382aafbSBarry Smith + memory1 - memory to free 1177d382aafbSBarry Smith - memory2 - 2nd memory to free 1178d382aafbSBarry Smith 1179d382aafbSBarry Smith Level: developer 1180d382aafbSBarry Smith 1181d382aafbSBarry Smith Notes: Memory must have been obtained with PetscMalloc2() 1182d382aafbSBarry Smith 1183d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree() 1184d382aafbSBarry Smith 1185d382aafbSBarry Smith Concepts: memory allocation 1186d382aafbSBarry Smith 1187d382aafbSBarry Smith M*/ 1188b4cc1d85SMatthew G. Knepley #if !defined(PETSC_USE_MALLOC_COALESCED) 1189d382aafbSBarry Smith #define PetscFree2(m1,m2) (PetscFree(m2) || PetscFree(m1)) 1190d382aafbSBarry Smith #else 1191e38f91f2SMatthew G. Knepley #define PetscFree2(m1,m2) ((m1) ? ((m2)=0,PetscFree(m1)) : ((m1)=0,PetscFree(m2))) 1192d382aafbSBarry Smith #endif 1193d382aafbSBarry Smith 1194d382aafbSBarry Smith /*MC 1195d382aafbSBarry Smith PetscFree3 - Frees 3 chunks of memory obtained with PetscMalloc3() 1196d382aafbSBarry Smith 1197eca87e8dSBarry Smith Synopsis: 1198aaa7dc30SBarry Smith #include <petscsys.h> 1199eca87e8dSBarry Smith PetscErrorCode PetscFree3(void *memory1,void *memory2,void *memory3) 1200eca87e8dSBarry Smith 1201eca87e8dSBarry Smith Not Collective 1202eca87e8dSBarry Smith 1203d382aafbSBarry Smith Input Parameter: 1204d382aafbSBarry Smith + memory1 - memory to free 1205d382aafbSBarry Smith . memory2 - 2nd memory to free 1206d382aafbSBarry Smith - memory3 - 3rd memory to free 1207d382aafbSBarry Smith 1208d382aafbSBarry Smith Level: developer 1209d382aafbSBarry Smith 1210d382aafbSBarry Smith Notes: Memory must have been obtained with PetscMalloc3() 1211d382aafbSBarry Smith 1212d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree(), PetscMalloc3() 1213d382aafbSBarry Smith 1214d382aafbSBarry Smith Concepts: memory allocation 1215d382aafbSBarry Smith 1216d382aafbSBarry Smith M*/ 1217b4cc1d85SMatthew G. Knepley #if !defined(PETSC_USE_MALLOC_COALESCED) 1218d382aafbSBarry Smith #define PetscFree3(m1,m2,m3) (PetscFree(m3) || PetscFree(m2) || PetscFree(m1)) 1219d382aafbSBarry Smith #else 1220e38f91f2SMatthew G. Knepley #define PetscFree3(m1,m2,m3) ((m1) ? ((m3)=0,(m2)=0,PetscFree(m1)) : ((m2) ? ((m3)=0,(m1)=0,PetscFree(m2)) : ((m2)=0,(m1)=0,PetscFree(m3)))) 1221d382aafbSBarry Smith #endif 1222d382aafbSBarry Smith 1223d382aafbSBarry Smith /*MC 1224d382aafbSBarry Smith PetscFree4 - Frees 4 chunks of memory obtained with PetscMalloc4() 1225d382aafbSBarry Smith 1226eca87e8dSBarry Smith Synopsis: 1227aaa7dc30SBarry Smith #include <petscsys.h> 1228eca87e8dSBarry Smith PetscErrorCode PetscFree4(void *m1,void *m2,void *m3,void *m4) 1229eca87e8dSBarry Smith 1230eca87e8dSBarry Smith Not Collective 1231eca87e8dSBarry Smith 1232d382aafbSBarry Smith Input Parameter: 1233d382aafbSBarry Smith + m1 - memory to free 1234d382aafbSBarry Smith . m2 - 2nd memory to free 1235d382aafbSBarry Smith . m3 - 3rd memory to free 1236d382aafbSBarry Smith - m4 - 4th memory to free 1237d382aafbSBarry Smith 1238d382aafbSBarry Smith Level: developer 1239d382aafbSBarry Smith 1240d382aafbSBarry Smith Notes: Memory must have been obtained with PetscMalloc4() 1241d382aafbSBarry Smith 1242d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree(), PetscMalloc3(), PetscMalloc4() 1243d382aafbSBarry Smith 1244d382aafbSBarry Smith Concepts: memory allocation 1245d382aafbSBarry Smith 1246d382aafbSBarry Smith M*/ 1247b4cc1d85SMatthew G. Knepley #if !defined(PETSC_USE_MALLOC_COALESCED) 1248d382aafbSBarry Smith #define PetscFree4(m1,m2,m3,m4) (PetscFree(m4) || PetscFree(m3) || PetscFree(m2) || PetscFree(m1)) 1249d382aafbSBarry Smith #else 1250e38f91f2SMatthew G. Knepley #define PetscFree4(m1,m2,m3,m4) ((m1) ? ((m4)=0,(m3)=0,(m2)=0,PetscFree(m1)) : ((m2) ? ((m4)=0,(m3)=0,(m1)=0,PetscFree(m2)) : ((m3) ? ((m4)=0,(m2)=0,(m1)=0,PetscFree(m3)) : ((m3)=0,(m2)=0,(m1)=0,PetscFree(m4))))) 1251d382aafbSBarry Smith #endif 1252d382aafbSBarry Smith 1253d382aafbSBarry Smith /*MC 1254d382aafbSBarry Smith PetscFree5 - Frees 5 chunks of memory obtained with PetscMalloc5() 1255d382aafbSBarry Smith 1256eca87e8dSBarry Smith Synopsis: 1257aaa7dc30SBarry Smith #include <petscsys.h> 1258eca87e8dSBarry Smith PetscErrorCode PetscFree5(void *m1,void *m2,void *m3,void *m4,void *m5) 1259eca87e8dSBarry Smith 1260eca87e8dSBarry Smith Not Collective 1261eca87e8dSBarry Smith 1262d382aafbSBarry Smith Input Parameter: 1263d382aafbSBarry Smith + m1 - memory to free 1264d382aafbSBarry Smith . m2 - 2nd memory to free 1265d382aafbSBarry Smith . m3 - 3rd memory to free 1266d382aafbSBarry Smith . m4 - 4th memory to free 1267d382aafbSBarry Smith - m5 - 5th memory to free 1268d382aafbSBarry Smith 1269d382aafbSBarry Smith Level: developer 1270d382aafbSBarry Smith 1271d382aafbSBarry Smith Notes: Memory must have been obtained with PetscMalloc5() 1272d382aafbSBarry Smith 1273d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree(), PetscMalloc3(), PetscMalloc4(), PetscMalloc5() 1274d382aafbSBarry Smith 1275d382aafbSBarry Smith Concepts: memory allocation 1276d382aafbSBarry Smith 1277d382aafbSBarry Smith M*/ 1278b4cc1d85SMatthew G. Knepley #if !defined(PETSC_USE_MALLOC_COALESCED) 1279d382aafbSBarry Smith #define PetscFree5(m1,m2,m3,m4,m5) (PetscFree(m5) || PetscFree(m4) || PetscFree(m3) || PetscFree(m2) || PetscFree(m1)) 1280d382aafbSBarry Smith #else 1281e38f91f2SMatthew G. Knepley #define PetscFree5(m1,m2,m3,m4,m5) ((m1) ? ((m5)=0,(m4)=0,(m3)=0,(m2)=0,PetscFree(m1)) : ((m2) ? ((m5)=0,(m4)=0,(m3)=0,(m1)=0,PetscFree(m2)) : ((m3) ? ((m5)=0,(m4)=0,(m2)=0,(m1)=0,PetscFree(m3)) : \ 1282e38f91f2SMatthew G. Knepley ((m4) ? ((m5)=0,(m3)=0,(m2)=0,(m1)=0,PetscFree(m4)) : ((m4)=0,(m3)=0,(m2)=0,(m1)=0,PetscFree(m5)))))) 1283d382aafbSBarry Smith #endif 1284d382aafbSBarry Smith 1285d382aafbSBarry Smith 1286d382aafbSBarry Smith /*MC 1287d382aafbSBarry Smith PetscFree6 - Frees 6 chunks of memory obtained with PetscMalloc6() 1288d382aafbSBarry Smith 1289eca87e8dSBarry Smith Synopsis: 1290aaa7dc30SBarry Smith #include <petscsys.h> 1291eca87e8dSBarry Smith PetscErrorCode PetscFree6(void *m1,void *m2,void *m3,void *m4,void *m5,void *m6) 1292eca87e8dSBarry Smith 1293eca87e8dSBarry Smith Not Collective 1294eca87e8dSBarry Smith 1295d382aafbSBarry Smith Input Parameter: 1296d382aafbSBarry Smith + m1 - memory to free 1297d382aafbSBarry Smith . m2 - 2nd memory to free 1298d382aafbSBarry Smith . m3 - 3rd memory to free 1299d382aafbSBarry Smith . m4 - 4th memory to free 1300d382aafbSBarry Smith . m5 - 5th memory to free 1301d382aafbSBarry Smith - m6 - 6th memory to free 1302d382aafbSBarry Smith 1303d382aafbSBarry Smith 1304d382aafbSBarry Smith Level: developer 1305d382aafbSBarry Smith 1306d382aafbSBarry Smith Notes: Memory must have been obtained with PetscMalloc6() 1307d382aafbSBarry Smith 1308d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree(), PetscMalloc3(), PetscMalloc4(), PetscMalloc5(), PetscMalloc6() 1309d382aafbSBarry Smith 1310d382aafbSBarry Smith Concepts: memory allocation 1311d382aafbSBarry Smith 1312d382aafbSBarry Smith M*/ 1313b4cc1d85SMatthew G. Knepley #if !defined(PETSC_USE_MALLOC_COALESCED) 1314d382aafbSBarry Smith #define PetscFree6(m1,m2,m3,m4,m5,m6) (PetscFree(m6) || PetscFree(m5) || PetscFree(m4) || PetscFree(m3) || PetscFree(m2) || PetscFree(m1)) 1315d382aafbSBarry Smith #else 1316e38f91f2SMatthew G. Knepley #define PetscFree6(m1,m2,m3,m4,m5,m6) ((m1) ? ((m6)=0,(m5)=0,(m4)=0,(m3)=0,(m2)=0,PetscFree(m1)) : ((m2) ? ((m6)=0,(m5)=0,(m4)=0,(m3)=0,(m1)=0,PetscFree(m2)) : \ 1317e38f91f2SMatthew G. Knepley ((m3) ? ((m6)=0,(m5)=0,(m4)=0,(m2)=0,(m1)=0,PetscFree(m3)) : ((m4) ? ((m6)=0,(m5)=0,(m3)=0,(m2)=0,(m1)=0,PetscFree(m4)) : \ 1318e38f91f2SMatthew G. Knepley ((m5) ? ((m6)=0,(m4)=0,(m3)=0,(m2)=0,(m1)=0,PetscFree(m5)) : ((m5)=0,(m4)=0,(m3)=0,(m2)=0,(m1)=0,PetscFree(m6))))))) 1319d382aafbSBarry Smith #endif 1320d382aafbSBarry Smith 1321d382aafbSBarry Smith /*MC 1322d382aafbSBarry Smith PetscFree7 - Frees 7 chunks of memory obtained with PetscMalloc7() 1323d382aafbSBarry Smith 1324eca87e8dSBarry Smith Synopsis: 1325aaa7dc30SBarry Smith #include <petscsys.h> 1326eca87e8dSBarry Smith PetscErrorCode PetscFree7(void *m1,void *m2,void *m3,void *m4,void *m5,void *m6,void *m7) 1327eca87e8dSBarry Smith 1328eca87e8dSBarry Smith Not Collective 1329eca87e8dSBarry Smith 1330d382aafbSBarry Smith Input Parameter: 1331d382aafbSBarry Smith + m1 - memory to free 1332d382aafbSBarry Smith . m2 - 2nd memory to free 1333d382aafbSBarry Smith . m3 - 3rd memory to free 1334d382aafbSBarry Smith . m4 - 4th memory to free 1335d382aafbSBarry Smith . m5 - 5th memory to free 1336d382aafbSBarry Smith . m6 - 6th memory to free 1337d382aafbSBarry Smith - m7 - 7th memory to free 1338d382aafbSBarry Smith 1339d382aafbSBarry Smith 1340d382aafbSBarry Smith Level: developer 1341d382aafbSBarry Smith 1342d382aafbSBarry Smith Notes: Memory must have been obtained with PetscMalloc7() 1343d382aafbSBarry Smith 1344d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree(), PetscMalloc3(), PetscMalloc4(), PetscMalloc5(), PetscMalloc6(), 1345d382aafbSBarry Smith PetscMalloc7() 1346d382aafbSBarry Smith 1347d382aafbSBarry Smith Concepts: memory allocation 1348d382aafbSBarry Smith 1349d382aafbSBarry Smith M*/ 1350b4cc1d85SMatthew G. Knepley #if !defined(PETSC_USE_MALLOC_COALESCED) 1351d382aafbSBarry Smith #define PetscFree7(m1,m2,m3,m4,m5,m6,m7) (PetscFree(m7) || PetscFree(m6) || PetscFree(m5) || PetscFree(m4) || PetscFree(m3) || PetscFree(m2) || PetscFree(m1)) 1352d382aafbSBarry Smith #else 1353e38f91f2SMatthew G. Knepley #define PetscFree7(m1,m2,m3,m4,m5,m6,m7) ((m1) ? ((m7)=0,(m6)=0,(m5)=0,(m4)=0,(m3)=0,(m2)=0,PetscFree(m1)) : ((m2) ? ((m7)=0,(m6)=0,(m5)=0,(m4)=0,(m3)=0,(m1)=0,PetscFree(m2)) : \ 1354e38f91f2SMatthew G. Knepley ((m3) ? ((m7)=0,(m6)=0,(m5)=0,(m4)=0,(m2)=0,(m1)=0,PetscFree(m3)) : ((m4) ? ((m7)=0,(m6)=0,(m5)=0,(m3)=0,(m2)=0,(m1)=0,PetscFree(m4)) : \ 135506c0a5e5SMatthew G. Knepley ((m5) ? ((m7)=0,(m6)=0,(m4)=0,(m3)=0,(m2)=0,(m1)=0,PetscFree(m5)) : ((m6) ? ((m7)=0,(m5)=0,(m4)=0,(m3)=0,(m2)=0,(m1)=0,PetscFree(m6)) : \ 1356e38f91f2SMatthew G. Knepley ((m6)=0,(m5)=0,(m4)=0,(m3)=0,(m2)=0,(m1)=0,PetscFree(m7)))))))) 1357d382aafbSBarry Smith #endif 1358d382aafbSBarry Smith 1359efca3c55SSatish Balay PETSC_EXTERN PetscErrorCode (*PetscTrMalloc)(size_t,int,const char[],const char[],void**); 1360efca3c55SSatish Balay PETSC_EXTERN PetscErrorCode (*PetscTrFree)(void*,int,const char[],const char[]); 1361efca3c55SSatish Balay PETSC_EXTERN PetscErrorCode PetscMallocSet(PetscErrorCode (*)(size_t,int,const char[],const char[],void**),PetscErrorCode (*)(void*,int,const char[],const char[])); 1362014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocClear(void); 1363d382aafbSBarry Smith 1364d382aafbSBarry Smith /* 1365a5057860SBarry Smith PetscLogDouble variables are used to contain double precision numbers 1366a5057860SBarry Smith that are not used in the numerical computations, but rather in logging, 1367a5057860SBarry Smith timing etc. 1368a5057860SBarry Smith */ 1369a5057860SBarry Smith typedef double PetscLogDouble; 1370a5057860SBarry Smith #define MPIU_PETSCLOGDOUBLE MPI_DOUBLE 1371a5057860SBarry Smith 1372a5057860SBarry Smith /* 137366d669d6SBarry Smith Routines for tracing memory corruption/bleeding with default PETSc memory allocation 1374d382aafbSBarry Smith */ 1375014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocDump(FILE *); 1376014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocDumpLog(FILE *); 1377014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocGetCurrentUsage(PetscLogDouble *); 1378014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocGetMaximumUsage(PetscLogDouble *); 1379014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocDebug(PetscBool); 13800acecf5bSBarry Smith PETSC_EXTERN PetscErrorCode PetscMallocGetDebug(PetscBool*); 1381efca3c55SSatish Balay PETSC_EXTERN PetscErrorCode PetscMallocValidate(int,const char[],const char[]); 1382014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocSetDumpLog(void); 1383574034a9SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocSetDumpLogThreshold(PetscLogDouble); 1384014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocGetDumpLog(PetscBool*); 1385d382aafbSBarry Smith 1386d382aafbSBarry Smith /*E 1387d382aafbSBarry Smith PetscDataType - Used for handling different basic data types. 1388d382aafbSBarry Smith 1389d382aafbSBarry Smith Level: beginner 1390d382aafbSBarry Smith 1391d382aafbSBarry Smith Developer comment: It would be nice if we could always just use MPI Datatypes, why can we not? 1392d382aafbSBarry Smith 1393d382aafbSBarry Smith .seealso: PetscBinaryRead(), PetscBinaryWrite(), PetscDataTypeToMPIDataType(), 1394d382aafbSBarry Smith PetscDataTypeGetSize() 1395d382aafbSBarry Smith 1396d382aafbSBarry Smith E*/ 1397d382aafbSBarry Smith typedef enum {PETSC_INT = 0,PETSC_DOUBLE = 1,PETSC_COMPLEX = 2, PETSC_LONG = 3 ,PETSC_SHORT = 4,PETSC_FLOAT = 5, 13987e97c476SMatthew G. Knepley PETSC_CHAR = 6,PETSC_BIT_LOGICAL = 7,PETSC_ENUM = 8,PETSC_BOOL=9, PETSC___FLOAT128 = 10,PETSC_OBJECT = 11, PETSC_FUNCTION = 12, PETSC_STRING = 12} PetscDataType; 13996a6fc655SJed Brown PETSC_EXTERN const char *const PetscDataTypes[]; 1400d382aafbSBarry Smith 1401d382aafbSBarry Smith #if defined(PETSC_USE_COMPLEX) 1402d382aafbSBarry Smith #define PETSC_SCALAR PETSC_COMPLEX 1403d382aafbSBarry Smith #else 1404ce63c4c1SBarry Smith #if defined(PETSC_USE_REAL_SINGLE) 1405d382aafbSBarry Smith #define PETSC_SCALAR PETSC_FLOAT 140659a34000SBarry Smith #elif defined(PETSC_USE_REAL___FLOAT128) 140759a34000SBarry Smith #define PETSC_SCALAR PETSC___FLOAT128 1408d382aafbSBarry Smith #else 1409d382aafbSBarry Smith #define PETSC_SCALAR PETSC_DOUBLE 1410d382aafbSBarry Smith #endif 1411d382aafbSBarry Smith #endif 1412ce63c4c1SBarry Smith #if defined(PETSC_USE_REAL_SINGLE) 1413d382aafbSBarry Smith #define PETSC_REAL PETSC_FLOAT 141459a34000SBarry Smith #elif defined(PETSC_USE_REAL___FLOAT128) 141559a34000SBarry Smith #define PETSC_REAL PETSC___FLOAT128 1416d382aafbSBarry Smith #else 1417d382aafbSBarry Smith #define PETSC_REAL PETSC_DOUBLE 1418d382aafbSBarry Smith #endif 1419d382aafbSBarry Smith #define PETSC_FORTRANADDR PETSC_LONG 1420d382aafbSBarry Smith 1421014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDataTypeToMPIDataType(PetscDataType,MPI_Datatype*); 1422014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMPIDataTypeToPetscDataType(MPI_Datatype,PetscDataType*); 1423014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDataTypeGetSize(PetscDataType,size_t*); 14248e4b2d1dSBarry Smith PETSC_EXTERN PetscErrorCode PetscDataTypeFromString(const char*,PetscDataType*,PetscBool*); 1425d382aafbSBarry Smith 1426d382aafbSBarry Smith /* 1427d382aafbSBarry Smith Basic memory and string operations. These are usually simple wrappers 1428d382aafbSBarry Smith around the basic Unix system calls, but a few of them have additional 1429d382aafbSBarry Smith functionality and/or error checking. 1430d382aafbSBarry Smith */ 1431014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBitMemcpy(void*,PetscInt,const void*,PetscInt,PetscInt,PetscDataType); 1432014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMemmove(void*,void *,size_t); 1433014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMemcmp(const void*,const void*,size_t,PetscBool *); 1434014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrlen(const char[],size_t*); 1435d67fe73bSBarry Smith PETSC_EXTERN PetscErrorCode PetscStrToArray(const char[],char,int*,char ***); 1436014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrToArrayDestroy(int,char **); 1437014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrcmp(const char[],const char[],PetscBool *); 1438014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrgrt(const char[],const char[],PetscBool *); 1439014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrcasecmp(const char[],const char[],PetscBool *); 1440014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrncmp(const char[],const char[],size_t,PetscBool *); 1441014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrcpy(char[],const char[]); 1442014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrcat(char[],const char[]); 1443014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrncat(char[],const char[],size_t); 1444014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrncpy(char[],const char[],size_t); 1445014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrchr(const char[],char,char *[]); 1446014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrtolower(char[]); 14472f234a98SBarry Smith PETSC_EXTERN PetscErrorCode PetscStrtoupper(char[]); 1448014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrrchr(const char[],char,char *[]); 1449014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrstr(const char[],const char[],char *[]); 1450014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrrstr(const char[],const char[],char *[]); 1451014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrendswith(const char[],const char[],PetscBool*); 14522c9581d2SBarry Smith PETSC_EXTERN PetscErrorCode PetscStrbeginswith(const char[],const char[],PetscBool*); 1453014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrendswithwhich(const char[],const char *const*,PetscInt*); 1454014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrallocpy(const char[],char *[]); 145547340559SBarry Smith PETSC_EXTERN PetscErrorCode PetscStrArrayallocpy(const char *const*,char***); 14566fed8037SJed Brown PETSC_EXTERN PetscErrorCode PetscStrArrayDestroy(char***); 14576991f827SBarry Smith PETSC_EXTERN PetscErrorCode PetscStrNArrayallocpy(PetscInt,const char *const*,char***); 14586991f827SBarry Smith PETSC_EXTERN PetscErrorCode PetscStrNArrayDestroy(PetscInt,char***); 1459014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrreplace(MPI_Comm,const char[],char[],size_t); 1460d382aafbSBarry Smith 1461573b0fb4SBarry Smith PETSC_EXTERN void PetscStrcmpNoError(const char[],const char[],PetscBool *); 1462573b0fb4SBarry Smith 1463d382aafbSBarry Smith /*S 1464d382aafbSBarry Smith PetscToken - 'Token' used for managing tokenizing strings 1465d382aafbSBarry Smith 1466d382aafbSBarry Smith Level: intermediate 1467d382aafbSBarry Smith 1468d382aafbSBarry Smith .seealso: PetscTokenCreate(), PetscTokenFind(), PetscTokenDestroy() 1469d382aafbSBarry Smith S*/ 1470d382aafbSBarry Smith typedef struct _p_PetscToken* PetscToken; 1471d382aafbSBarry Smith 1472014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscTokenCreate(const char[],const char,PetscToken*); 1473014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscTokenFind(PetscToken,char *[]); 1474014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscTokenDestroy(PetscToken*); 1475d382aafbSBarry Smith 1476a53986e1SJed Brown PETSC_EXTERN PetscErrorCode PetscEListFind(PetscInt,const char *const*,const char*,PetscInt*,PetscBool*); 1477a53986e1SJed Brown PETSC_EXTERN PetscErrorCode PetscEnumFind(const char *const*,const char*,PetscEnum*,PetscBool*); 1478a53986e1SJed Brown 1479d382aafbSBarry Smith /* 1480d382aafbSBarry Smith These are MPI operations for MPI_Allreduce() etc 1481d382aafbSBarry Smith */ 1482014dd563SJed Brown PETSC_EXTERN MPI_Op PetscMaxSum_Op; 14837c2de775SJed Brown #if (defined(PETSC_HAVE_COMPLEX) && !defined(PETSC_HAVE_MPI_C_DOUBLE_COMPLEX)) || defined(PETSC_USE_REAL___FLOAT128) 1484014dd563SJed Brown PETSC_EXTERN MPI_Op MPIU_SUM; 14852414b3c7SJed Brown #else 14862414b3c7SJed Brown #define MPIU_SUM MPI_SUM 14872414b3c7SJed Brown #endif 14882414b3c7SJed Brown #if defined(PETSC_USE_REAL___FLOAT128) 1489014dd563SJed Brown PETSC_EXTERN MPI_Op MPIU_MAX; 1490014dd563SJed Brown PETSC_EXTERN MPI_Op MPIU_MIN; 1491d9822059SBarry Smith #else 1492d9822059SBarry Smith #define MPIU_MAX MPI_MAX 1493d9822059SBarry Smith #define MPIU_MIN MPI_MIN 1494d9822059SBarry Smith #endif 1495014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMaxSum(MPI_Comm,const PetscInt[],PetscInt*,PetscInt*); 1496d382aafbSBarry Smith 1497014dd563SJed Brown PETSC_EXTERN PetscErrorCode MPIULong_Send(void*,PetscInt,MPI_Datatype,PetscMPIInt,PetscMPIInt,MPI_Comm); 1498014dd563SJed Brown PETSC_EXTERN PetscErrorCode MPIULong_Recv(void*,PetscInt,MPI_Datatype,PetscMPIInt,PetscMPIInt,MPI_Comm); 1499eb3f98d2SBarry Smith 1500d382aafbSBarry Smith /*S 1501d382aafbSBarry Smith PetscObject - any PETSc object, PetscViewer, Mat, Vec, KSP etc 1502d382aafbSBarry Smith 1503d382aafbSBarry Smith Level: beginner 1504d382aafbSBarry Smith 15052981ebdbSBarry Smith Note: This is the base class from which all PETSc objects are derived from. 1506d382aafbSBarry Smith 15072b26979fSBarry Smith .seealso: PetscObjectDestroy(), PetscObjectView(), PetscObjectGetName(), PetscObjectSetName(), PetscObjectReference(), PetscObjectDereference() 1508d382aafbSBarry Smith S*/ 1509d382aafbSBarry Smith typedef struct _p_PetscObject* PetscObject; 1510d382aafbSBarry Smith 1511270bf2e7SJed Brown /*MC 1512127c8a3bSJed Brown PetscObjectId - unique integer Id for a PetscObject 1513127c8a3bSJed Brown 1514127c8a3bSJed Brown Level: developer 1515127c8a3bSJed Brown 1516127c8a3bSJed Brown Notes: Unlike pointer values, object ids are never reused. 1517127c8a3bSJed Brown 1518127c8a3bSJed Brown .seealso: PetscObjectState, PetscObjectGetId() 1519127c8a3bSJed Brown M*/ 1520127c8a3bSJed Brown typedef Petsc64bitInt PetscObjectId; 1521127c8a3bSJed Brown 1522127c8a3bSJed Brown /*MC 1523270bf2e7SJed Brown PetscObjectState - integer state for a PetscObject 1524270bf2e7SJed Brown 1525270bf2e7SJed Brown Level: developer 1526270bf2e7SJed Brown 1527270bf2e7SJed Brown Notes: 1528270bf2e7SJed Brown Object state is always-increasing and (for objects that track state) can be used to determine if an object has 1529270bf2e7SJed Brown changed since the last time you interacted with it. It is 64-bit so that it will not overflow for a very long time. 1530270bf2e7SJed Brown 15318dcff661SJed Brown .seealso: PetscObjectId, PetscObjectStateGet(), PetscObjectStateIncrease(), PetscObjectStateSet() 1532270bf2e7SJed Brown M*/ 1533270bf2e7SJed Brown typedef Petsc64bitInt PetscObjectState; 1534270bf2e7SJed Brown 1535d382aafbSBarry Smith /*S 1536140e18c1SBarry Smith PetscFunctionList - Linked list of functions, possibly stored in dynamic libraries, accessed 1537d382aafbSBarry Smith by string name 1538d382aafbSBarry Smith 1539d382aafbSBarry Smith Level: advanced 1540d382aafbSBarry Smith 1541140e18c1SBarry Smith .seealso: PetscFunctionListAdd(), PetscFunctionListDestroy(), PetscOpFlist 1542d382aafbSBarry Smith S*/ 1543140e18c1SBarry Smith typedef struct _n_PetscFunctionList *PetscFunctionList; 1544d382aafbSBarry Smith 1545d382aafbSBarry Smith /*E 1546d382aafbSBarry Smith PetscFileMode - Access mode for a file. 1547d382aafbSBarry Smith 1548d382aafbSBarry Smith Level: beginner 1549d382aafbSBarry Smith 1550d382aafbSBarry Smith FILE_MODE_READ - open a file at its beginning for reading 1551d382aafbSBarry Smith 1552d382aafbSBarry Smith FILE_MODE_WRITE - open a file at its beginning for writing (will create if the file does not exist) 1553d382aafbSBarry Smith 1554d382aafbSBarry Smith FILE_MODE_APPEND - open a file at end for writing 1555d382aafbSBarry Smith 1556d382aafbSBarry Smith FILE_MODE_UPDATE - open a file for updating, meaning for reading and writing 1557d382aafbSBarry Smith 1558d382aafbSBarry Smith FILE_MODE_APPEND_UPDATE - open a file for updating, meaning for reading and writing, at the end 1559d382aafbSBarry Smith 1560d382aafbSBarry Smith .seealso: PetscViewerFileSetMode() 1561d382aafbSBarry Smith E*/ 1562d382aafbSBarry Smith typedef enum {FILE_MODE_READ, FILE_MODE_WRITE, FILE_MODE_APPEND, FILE_MODE_UPDATE, FILE_MODE_APPEND_UPDATE} PetscFileMode; 1563d6a4318aSJed Brown extern const char *const PetscFileModes[]; 1564d6a4318aSJed Brown 1565639ff905SBarry Smith /* 1566639ff905SBarry Smith Defines PETSc error handling. 1567639ff905SBarry Smith */ 1568639ff905SBarry Smith #include <petscerror.h> 1569d382aafbSBarry Smith 15700700a824SBarry Smith #define PETSC_SMALLEST_CLASSID 1211211 1571014dd563SJed Brown PETSC_EXTERN PetscClassId PETSC_LARGEST_CLASSID; 1572014dd563SJed Brown PETSC_EXTERN PetscClassId PETSC_OBJECT_CLASSID; 1573014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscClassIdRegister(const char[],PetscClassId *); 1574d382aafbSBarry Smith 1575d382aafbSBarry Smith /* 1576d382aafbSBarry Smith Routines that get memory usage information from the OS 1577d382aafbSBarry Smith */ 1578014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMemoryGetCurrentUsage(PetscLogDouble *); 1579014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMemoryGetMaximumUsage(PetscLogDouble *); 1580014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMemorySetGetMaximumUsage(void); 1581b44d5720SBarry Smith PETSC_EXTERN PetscErrorCode PetscMemoryTrace(const char[]); 1582d382aafbSBarry Smith 1583014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscInfoAllow(PetscBool ,const char []); 1584014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSleep(PetscReal); 1585d382aafbSBarry Smith 1586d382aafbSBarry Smith /* 1587d382aafbSBarry Smith Initialization of PETSc 1588d382aafbSBarry Smith */ 1589014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscInitialize(int*,char***,const char[],const char[]); 1590014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscInitializeNoPointers(int,char**,const char[],const char[]); 1591014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscInitializeNoArguments(void); 1592014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscInitialized(PetscBool *); 1593014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFinalized(PetscBool *); 1594014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFinalize(void); 1595014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscInitializeFortran(void); 1596014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetArgs(int*,char ***); 1597014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetArguments(char ***); 1598014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFreeArguments(char **); 1599d382aafbSBarry Smith 1600014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscEnd(void); 1601607a6623SBarry Smith PETSC_EXTERN PetscErrorCode PetscSysInitializePackage(void); 1602d382aafbSBarry Smith 1603014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPythonInitialize(const char[],const char[]); 1604014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPythonFinalize(void); 1605014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPythonPrintError(void); 1606014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPythonMonitorSet(PetscObject,const char[]); 1607d382aafbSBarry Smith 1608d382aafbSBarry Smith /* 1609d382aafbSBarry Smith These are so that in extern C code we can caste function pointers to non-extern C 16102981ebdbSBarry Smith function pointers. Since the regular C++ code expects its function pointers to be C++ 1611d382aafbSBarry Smith */ 1612638cfed1SJed Brown PETSC_EXTERN_TYPEDEF typedef void (**PetscVoidStarFunction)(void); 1613638cfed1SJed Brown PETSC_EXTERN_TYPEDEF typedef void (*PetscVoidFunction)(void); 1614638cfed1SJed Brown PETSC_EXTERN_TYPEDEF typedef PetscErrorCode (*PetscErrorCodeFunction)(void); 1615d382aafbSBarry Smith 1616d382aafbSBarry Smith /* 1617d382aafbSBarry Smith Functions that can act on any PETSc object. 1618d382aafbSBarry Smith */ 1619014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectDestroy(PetscObject*); 1620014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetComm(PetscObject,MPI_Comm *); 1621014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetClassId(PetscObject,PetscClassId *); 1622014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetClassName(PetscObject,const char *[]); 1623014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectSetType(PetscObject,const char []); 1624014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectSetPrecision(PetscObject,PetscPrecision); 1625014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetType(PetscObject,const char *[]); 1626014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectSetName(PetscObject,const char[]); 1627014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetName(PetscObject,const char*[]); 1628014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectSetTabLevel(PetscObject,PetscInt); 1629014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetTabLevel(PetscObject,PetscInt*); 1630014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectIncrementTabLevel(PetscObject,PetscObject,PetscInt); 1631014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectReference(PetscObject); 1632014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetReference(PetscObject,PetscInt*); 1633014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectDereference(PetscObject); 1634014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetNewTag(PetscObject,PetscMPIInt *); 1635014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectCompose(PetscObject,const char[],PetscObject); 1636014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectRemoveReference(PetscObject,const char[]); 1637014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectQuery(PetscObject,const char[],PetscObject *); 1638bdf89e91SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectComposeFunction_Private(PetscObject,const char[],void (*)(void)); 1639bdf89e91SBarry Smith #define PetscObjectComposeFunction(a,b,d) PetscObjectComposeFunction_Private(a,b,(PetscVoidFunction)(d)) 1640014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectSetFromOptions(PetscObject); 1641014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectSetUp(PetscObject); 1642014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscCommGetNewTag(MPI_Comm,PetscMPIInt *); 1643014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectAddOptionsHandler(PetscObject,PetscErrorCode (*)(PetscObject,void*),PetscErrorCode (*)(PetscObject,void*),void*); 1644014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectProcessOptionsHandlers(PetscObject); 1645014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectDestroyOptionsHandlers(PetscObject); 16469abe469cSDmitry Karpeev PETSC_EXTERN PetscErrorCode PetscObjectsListGetGlobalNumbering(MPI_Comm,PetscInt,PetscObject*,PetscInt*,PetscInt*); 1647d382aafbSBarry Smith 1648665c2dedSJed Brown #include <petscviewertypes.h> 1649639ff905SBarry Smith #include <petscoptions.h> 1650639ff905SBarry Smith 1651c5e4d11fSDmitry Karpeev PETSC_EXTERN PetscErrorCode PetscMemoryView(PetscViewer,const char[]); 1652dae58748SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectPrintClassNamePrefixType(PetscObject,PetscViewer); 1653639ff905SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectView(PetscObject,PetscViewer); 16540005d66cSJed Brown #define PetscObjectQueryFunction(obj,name,fptr) PetscObjectQueryFunction_Private((obj),(name),(PetscVoidFunction*)(fptr)) 16550005d66cSJed Brown PETSC_EXTERN PetscErrorCode PetscObjectQueryFunction_Private(PetscObject,const char[],void (**)(void)); 1656014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectSetOptionsPrefix(PetscObject,const char[]); 1657014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectAppendOptionsPrefix(PetscObject,const char[]); 1658014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectPrependOptionsPrefix(PetscObject,const char[]); 1659014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetOptionsPrefix(PetscObject,const char*[]); 1660014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectChangeTypeName(PetscObject,const char[]); 1661014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectRegisterDestroy(PetscObject); 1662014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectRegisterDestroyAll(void); 1663685405a1SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectViewFromOptions(PetscObject,PetscObject,const char[]); 1664014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectName(PetscObject); 1665014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectTypeCompare(PetscObject,const char[],PetscBool *); 1666014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectTypeCompareAny(PetscObject,PetscBool*,const char[],...); 1667014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRegisterFinalize(PetscErrorCode (*)(void)); 1668014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRegisterFinalizeAll(void); 1669d382aafbSBarry Smith 1670e04113cfSBarry Smith #if defined(PETSC_HAVE_SAWS) 16717aab2a10SBarry Smith PETSC_EXTERN PetscErrorCode PetscSAWsBlock(void); 1672e04113cfSBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectSAWsViewOff(PetscObject); 1673e04113cfSBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectSAWsSetBlock(PetscObject,PetscBool); 1674e04113cfSBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectSAWsBlock(PetscObject); 1675e04113cfSBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectSAWsGrantAccess(PetscObject); 1676e04113cfSBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectSAWsTakeAccess(PetscObject); 1677e04113cfSBarry Smith PETSC_EXTERN void PetscStackSAWsGrantAccess(void); 1678e04113cfSBarry Smith PETSC_EXTERN void PetscStackSAWsTakeAccess(void); 1679e04113cfSBarry Smith PETSC_EXTERN PetscErrorCode PetscStackViewSAWs(void); 1680e04113cfSBarry Smith PETSC_EXTERN PetscErrorCode PetscStackSAWsViewOff(void); 168115681b3cSBarry Smith 1682ec7429eaSBarry Smith #else 16837aab2a10SBarry Smith #define PetscSAWsBlock() 0 1684e04113cfSBarry Smith #define PetscObjectSAWsViewOff(obj) 0 1685e04113cfSBarry Smith #define PetscObjectSAWsSetBlock(obj,flg) 0 1686e04113cfSBarry Smith #define PetscObjectSAWsBlock(obj) 0 1687e04113cfSBarry Smith #define PetscObjectSAWsGrantAccess(obj) 0 1688e04113cfSBarry Smith #define PetscObjectSAWsTakeAccess(obj) 0 1689e04113cfSBarry Smith #define PetscStackViewSAWs() 0 1690e04113cfSBarry Smith #define PetscStackSAWsViewOff() 0 1691e04113cfSBarry Smith #define PetscStackSAWsTakeAccess() 1692e04113cfSBarry Smith #define PetscStackSAWsGrantAccess() 169315681b3cSBarry Smith 1694ec7429eaSBarry Smith #endif 1695b90c6cbeSBarry Smith 16967d5d4d99SBarry Smith typedef void* PetscDLHandle; 1697e4d177b5SBarry Smith typedef enum {PETSC_DL_DECIDE=0,PETSC_DL_NOW=1,PETSC_DL_LOCAL=2} PetscDLMode; 169882b97d80SJed Brown PETSC_EXTERN PetscErrorCode PetscDLOpen(const char[],PetscDLMode,PetscDLHandle *); 169982b97d80SJed Brown PETSC_EXTERN PetscErrorCode PetscDLClose(PetscDLHandle *); 170082b97d80SJed Brown PETSC_EXTERN PetscErrorCode PetscDLSym(PetscDLHandle,const char[],void **); 17017d5d4d99SBarry Smith 1702d382aafbSBarry Smith 17035fe58b6fSBarry Smith #if defined(PETSC_USE_DEBUG) 1704a64a8e02SBarry Smith PETSC_EXTERN PetscErrorCode PetscMallocGetStack(void*,PetscStack**); 17055fe58b6fSBarry Smith #endif 17067eb1d149SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectsDump(FILE*,PetscBool); 1707a64a8e02SBarry Smith 1708d382aafbSBarry Smith /*S 1709140e18c1SBarry Smith PetscObjectList - Linked list of PETSc objects, each accessable by string name 1710d382aafbSBarry Smith 17111d0fab5eSBarry Smith Level: developer 1712d382aafbSBarry Smith 17131d0fab5eSBarry Smith Notes: Used by PetscObjectCompose() and PetscObjectQuery() 17141d0fab5eSBarry Smith 1715140e18c1SBarry Smith .seealso: PetscObjectListAdd(), PetscObjectListDestroy(), PetscObjectListFind(), PetscObjectCompose(), PetscObjectQuery(), PetscFunctionList 1716d382aafbSBarry Smith S*/ 1717140e18c1SBarry Smith typedef struct _n_PetscObjectList *PetscObjectList; 1718d382aafbSBarry Smith 1719140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectListDestroy(PetscObjectList*); 1720140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectListFind(PetscObjectList,const char[],PetscObject*); 1721140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectListReverseFind(PetscObjectList,PetscObject,char**,PetscBool*); 1722140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectListAdd(PetscObjectList *,const char[],PetscObject); 1723140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectListRemoveReference(PetscObjectList *,const char[]); 1724140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectListDuplicate(PetscObjectList,PetscObjectList *); 1725d382aafbSBarry Smith 1726d382aafbSBarry Smith /* 1727503cfb0cSBarry Smith Dynamic library lists. Lists of names of routines in objects or in dynamic 1728d382aafbSBarry Smith link libraries that will be loaded as needed. 1729d382aafbSBarry Smith */ 1730a240a19fSJed Brown 1731a240a19fSJed Brown #define PetscFunctionListAdd(list,name,fptr) PetscFunctionListAdd_Private((list),(name),(PetscVoidFunction)(fptr)) 1732a240a19fSJed Brown PETSC_EXTERN PetscErrorCode PetscFunctionListAdd_Private(PetscFunctionList*,const char[],void (*)(void)); 1733140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscFunctionListDestroy(PetscFunctionList*); 17341c9cd337SJed Brown #define PetscFunctionListFind(list,name,fptr) PetscFunctionListFind_Private((list),(name),(PetscVoidFunction*)(fptr)) 17351c9cd337SJed Brown PETSC_EXTERN PetscErrorCode PetscFunctionListFind_Private(PetscFunctionList,const char[],void (**)(void)); 1736140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscFunctionListPrintTypes(MPI_Comm,FILE*,const char[],const char[],const char[],const char[],PetscFunctionList,const char[]); 1737140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscFunctionListDuplicate(PetscFunctionList,PetscFunctionList *); 1738140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscFunctionListView(PetscFunctionList,PetscViewer); 1739140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscFunctionListGet(PetscFunctionList,const char ***,int*); 1740d382aafbSBarry Smith 1741d382aafbSBarry Smith /*S 1742d382aafbSBarry Smith PetscDLLibrary - Linked list of dynamics libraries to search for functions 1743d382aafbSBarry Smith 1744d382aafbSBarry Smith Level: advanced 1745d382aafbSBarry Smith 1746d382aafbSBarry Smith .seealso: PetscDLLibraryOpen() 1747d382aafbSBarry Smith S*/ 1748d382aafbSBarry Smith typedef struct _n_PetscDLLibrary *PetscDLLibrary; 1749014dd563SJed Brown PETSC_EXTERN PetscDLLibrary PetscDLLibrariesLoaded; 1750014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDLLibraryAppend(MPI_Comm,PetscDLLibrary *,const char[]); 1751014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDLLibraryPrepend(MPI_Comm,PetscDLLibrary *,const char[]); 1752014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDLLibrarySym(MPI_Comm,PetscDLLibrary *,const char[],const char[],void **); 1753014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDLLibraryPrintPath(PetscDLLibrary); 1754014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDLLibraryRetrieve(MPI_Comm,const char[],char *,size_t,PetscBool *); 1755014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDLLibraryOpen(MPI_Comm,const char[],PetscDLLibrary *); 1756014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDLLibraryClose(PetscDLLibrary); 1757d382aafbSBarry Smith 1758d382aafbSBarry Smith /* 1759d382aafbSBarry Smith Useful utility routines 1760d382aafbSBarry Smith */ 1761014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSplitOwnership(MPI_Comm,PetscInt*,PetscInt*); 1762014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSplitOwnershipBlock(MPI_Comm,PetscInt,PetscInt*,PetscInt*); 1763014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSequentialPhaseBegin(MPI_Comm,PetscMPIInt); 1764014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSequentialPhaseEnd(MPI_Comm,PetscMPIInt); 1765014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBarrier(PetscObject); 1766014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMPIDump(FILE*); 1767d382aafbSBarry Smith 1768503cfb0cSBarry Smith /* 1769ace3abfcSBarry Smith PetscNot - negates a logical type value and returns result as a PetscBool 1770503cfb0cSBarry Smith 1771503cfb0cSBarry Smith Notes: This is useful in cases like 1772503cfb0cSBarry Smith $ int *a; 1773ace3abfcSBarry Smith $ PetscBool flag = PetscNot(a) 1774ace3abfcSBarry Smith where !a does not return a PetscBool because we cannot provide a cast from int to PetscBool in C. 1775503cfb0cSBarry Smith */ 1776d382aafbSBarry Smith #define PetscNot(a) ((a) ? PETSC_FALSE : PETSC_TRUE) 1777503cfb0cSBarry Smith 1778d382aafbSBarry Smith /*MC 1779d382aafbSBarry Smith PetscHelpPrintf - Prints help messages. 1780d382aafbSBarry Smith 1781d382aafbSBarry Smith Synopsis: 1782aaa7dc30SBarry Smith #include <petscsys.h> 1783d382aafbSBarry Smith PetscErrorCode (*PetscHelpPrintf)(const char format[],...); 1784d382aafbSBarry Smith 1785eca87e8dSBarry Smith Not Collective 1786eca87e8dSBarry Smith 1787d382aafbSBarry Smith Input Parameters: 1788d382aafbSBarry Smith . format - the usual printf() format string 1789d382aafbSBarry Smith 1790d382aafbSBarry Smith Level: developer 1791d382aafbSBarry Smith 1792d382aafbSBarry Smith Fortran Note: 1793d382aafbSBarry Smith This routine is not supported in Fortran. 1794d382aafbSBarry Smith 1795d382aafbSBarry Smith Concepts: help messages^printing 1796d382aafbSBarry Smith Concepts: printing^help messages 1797d382aafbSBarry Smith 1798d382aafbSBarry Smith .seealso: PetscFPrintf(), PetscSynchronizedPrintf(), PetscErrorPrintf() 1799d382aafbSBarry Smith M*/ 1800014dd563SJed Brown PETSC_EXTERN PetscErrorCode (*PetscHelpPrintf)(MPI_Comm,const char[],...); 1801d382aafbSBarry Smith 1802fcfd50ebSBarry Smith /* 1803fcfd50ebSBarry Smith Defines PETSc profiling. 1804fcfd50ebSBarry Smith */ 18052c8e378dSBarry Smith #include <petsclog.h> 1806fcfd50ebSBarry Smith 1807b90c6cbeSBarry Smith 1808fcfd50ebSBarry Smith 1809fcfd50ebSBarry Smith /* 1810fcfd50ebSBarry Smith Simple PETSc parallel IO for ASCII printing 1811fcfd50ebSBarry Smith */ 1812014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFixFilename(const char[],char[]); 1813014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFOpen(MPI_Comm,const char[],const char[],FILE**); 1814014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFClose(MPI_Comm,FILE*); 1815014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFPrintf(MPI_Comm,FILE*,const char[],...); 1816014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPrintf(MPI_Comm,const char[],...); 1817014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSNPrintf(char*,size_t,const char [],...); 1818014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSNPrintfCount(char*,size_t,const char [],size_t*,...); 1819fcfd50ebSBarry Smith 1820fcfd50ebSBarry Smith /* These are used internally by PETSc ASCII IO routines*/ 1821fcfd50ebSBarry Smith #include <stdarg.h> 1822014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscVSNPrintf(char*,size_t,const char[],size_t*,va_list); 1823014dd563SJed Brown PETSC_EXTERN PetscErrorCode (*PetscVFPrintf)(FILE*,const char[],va_list); 1824014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscVFPrintfDefault(FILE*,const char[],va_list); 1825fcfd50ebSBarry Smith 1826fcfd50ebSBarry Smith #if defined(PETSC_HAVE_MATLAB_ENGINE) 1827014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscVFPrintf_Matlab(FILE*,const char[],va_list); 1828fcfd50ebSBarry Smith #endif 1829fcfd50ebSBarry Smith 1830f1d7fe2eSBarry Smith #if defined(PETSC_HAVE_CLOSURES) 1831f1d7fe2eSBarry Smith PETSC_EXTERN PetscErrorCode PetscVFPrintfSetClosure(int (^)(const char*)); 1832f1d7fe2eSBarry Smith #endif 1833f1d7fe2eSBarry Smith 1834014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscErrorPrintfDefault(const char [],...); 1835014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscErrorPrintfNone(const char [],...); 1836014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscHelpPrintfDefault(MPI_Comm,const char [],...); 1837d382aafbSBarry Smith 1838d382aafbSBarry Smith #if defined(PETSC_HAVE_POPEN) 1839014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPOpen(MPI_Comm,const char[],const char[],const char[],FILE **); 184096a8e8cbSBarry Smith PETSC_EXTERN PetscErrorCode PetscPClose(MPI_Comm,FILE*,int*); 184174ba8654SBarry Smith PETSC_EXTERN PetscErrorCode PetscPOpenSetMachine(const char[]); 1842d382aafbSBarry Smith #endif 1843d382aafbSBarry Smith 1844014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSynchronizedPrintf(MPI_Comm,const char[],...); 1845014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSynchronizedFPrintf(MPI_Comm,FILE*,const char[],...); 18460ec8b6e3SBarry Smith PETSC_EXTERN PetscErrorCode PetscSynchronizedFlush(MPI_Comm,FILE*); 1847014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSynchronizedFGets(MPI_Comm,FILE*,size_t,char[]); 1848014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStartMatlab(MPI_Comm,const char[],const char[],FILE**); 1849014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStartJava(MPI_Comm,const char[],const char[],FILE**); 1850014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetPetscDir(const char*[]); 1851d382aafbSBarry Smith 1852014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPopUpSelect(MPI_Comm,const char*,const char*,int,const char**,int*); 1853d382aafbSBarry Smith 1854d382aafbSBarry Smith /*S 1855d382aafbSBarry Smith PetscContainer - Simple PETSc object that contains a pointer to any required data 1856d382aafbSBarry Smith 1857d382aafbSBarry Smith Level: advanced 1858d382aafbSBarry Smith 1859d382aafbSBarry Smith .seealso: PetscObject, PetscContainerCreate() 1860d382aafbSBarry Smith S*/ 1861014dd563SJed Brown PETSC_EXTERN PetscClassId PETSC_CONTAINER_CLASSID; 1862d382aafbSBarry Smith typedef struct _p_PetscContainer* PetscContainer; 1863014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscContainerGetPointer(PetscContainer,void **); 1864014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscContainerSetPointer(PetscContainer,void *); 1865014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscContainerDestroy(PetscContainer*); 1866014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscContainerCreate(MPI_Comm,PetscContainer *); 1867014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscContainerSetUserDestroy(PetscContainer, PetscErrorCode (*)(void*)); 1868d382aafbSBarry Smith 1869d382aafbSBarry Smith /* 1870d382aafbSBarry Smith For use in debuggers 1871d382aafbSBarry Smith */ 1872014dd563SJed Brown PETSC_EXTERN PetscMPIInt PetscGlobalRank; 1873014dd563SJed Brown PETSC_EXTERN PetscMPIInt PetscGlobalSize; 1874014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscIntView(PetscInt,const PetscInt[],PetscViewer); 1875014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRealView(PetscInt,const PetscReal[],PetscViewer); 1876014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscScalarView(PetscInt,const PetscScalar[],PetscViewer); 1877d382aafbSBarry Smith 1878a663daf8SBarry Smith #include <stddef.h> 1879a3aaec0aSJed Brown #include <string.h> /* for memcpy, memset */ 1880d382aafbSBarry Smith #if defined(PETSC_HAVE_STDLIB_H) 1881d382aafbSBarry Smith #include <stdlib.h> 1882d382aafbSBarry Smith #endif 18836c7e564aSBarry Smith 18844a92a979SJed Brown #if defined(PETSC_HAVE_XMMINTRIN_H) && !defined(__CUDACC__) 1885d382aafbSBarry Smith #include <xmmintrin.h> 1886d382aafbSBarry Smith #endif 1887d382aafbSBarry Smith 1888fcfd50ebSBarry Smith #undef __FUNCT__ 1889fcfd50ebSBarry Smith #define __FUNCT__ "PetscMemcpy" 1890d382aafbSBarry Smith /*@C 1891d382aafbSBarry Smith PetscMemcpy - Copies n bytes, beginning at location b, to the space 1892d382aafbSBarry Smith beginning at location a. The two memory regions CANNOT overlap, use 1893d382aafbSBarry Smith PetscMemmove() in that case. 1894d382aafbSBarry Smith 1895d382aafbSBarry Smith Not Collective 1896d382aafbSBarry Smith 1897d382aafbSBarry Smith Input Parameters: 1898d382aafbSBarry Smith + b - pointer to initial memory space 1899d382aafbSBarry Smith - n - length (in bytes) of space to copy 1900d382aafbSBarry Smith 1901d382aafbSBarry Smith Output Parameter: 1902d382aafbSBarry Smith . a - pointer to copy space 1903d382aafbSBarry Smith 1904d382aafbSBarry Smith Level: intermediate 1905d382aafbSBarry Smith 1906d382aafbSBarry Smith Compile Option: 1907d382aafbSBarry Smith PETSC_PREFER_DCOPY_FOR_MEMCPY will cause the BLAS dcopy() routine to be used 1908d382aafbSBarry Smith for memory copies on double precision values. 1909d382aafbSBarry Smith PETSC_PREFER_COPY_FOR_MEMCPY will cause C code to be used 1910d382aafbSBarry Smith for memory copies on double precision values. 1911d382aafbSBarry Smith PETSC_PREFER_FORTRAN_FORMEMCPY will cause Fortran code to be used 1912d382aafbSBarry Smith for memory copies on double precision values. 1913d382aafbSBarry Smith 1914d382aafbSBarry Smith Note: 1915d382aafbSBarry Smith This routine is analogous to memcpy(). 1916d382aafbSBarry Smith 1917503cfb0cSBarry Smith Developer Note: this is inlined for fastest performance 1918503cfb0cSBarry Smith 1919d382aafbSBarry Smith Concepts: memory^copying 1920d382aafbSBarry Smith Concepts: copying^memory 1921d382aafbSBarry Smith 1922d382aafbSBarry Smith .seealso: PetscMemmove() 1923d382aafbSBarry Smith 1924d382aafbSBarry Smith @*/ 19257087cfbeSBarry Smith PETSC_STATIC_INLINE PetscErrorCode PetscMemcpy(void *a,const void *b,size_t n) 1926d382aafbSBarry Smith { 1927d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 1928c5e4d11fSDmitry Karpeev size_t al = (size_t) a,bl = (size_t) b; 1929c5e4d11fSDmitry Karpeev size_t nl = (size_t) n; 1930a7e36092SMatthew G Knepley PetscFunctionBegin; 1931e32f2f54SBarry Smith if (n > 0 && !b) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_NULL,"Trying to copy from a null pointer"); 1932e32f2f54SBarry Smith if (n > 0 && !a) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_NULL,"Trying to copy to a null pointer"); 1933a7e36092SMatthew G Knepley #else 1934d382aafbSBarry Smith PetscFunctionBegin; 1935a7e36092SMatthew G Knepley #endif 1936a47a537aSLisandro Dalcin if (a != b && n > 0) { 1937d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 1938e47d2de2SBarry Smith if ((al > bl && (al - bl) < nl) || (bl - al) < nl) SETERRQ3(PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"Memory regions overlap: either use PetscMemmov()\n\ 1939d382aafbSBarry Smith or make sure your copy regions and lengths are correct. \n\ 1940d382aafbSBarry Smith Length (bytes) %ld first address %ld second address %ld",nl,al,bl); 1941d382aafbSBarry Smith #endif 1942d382aafbSBarry Smith #if (defined(PETSC_PREFER_DCOPY_FOR_MEMCPY) || defined(PETSC_PREFER_COPY_FOR_MEMCPY) || defined(PETSC_PREFER_FORTRAN_FORMEMCPY)) 1943c5e4d11fSDmitry Karpeev if (!(a % sizeof(PetscScalar)) && !(n % sizeof(PetscScalar))) { 1944d382aafbSBarry Smith size_t len = n/sizeof(PetscScalar); 1945d382aafbSBarry Smith #if defined(PETSC_PREFER_DCOPY_FOR_MEMCPY) 1946c5df96a5SBarry Smith PetscBLASInt one = 1,blen; 1947c5df96a5SBarry Smith PetscErrorCode ierr; 1948c5df96a5SBarry Smith ierr = PetscBLASIntCast(len,&blen);CHKERRQ(ierr); 19498b83055fSJed Brown PetscStackCallBLAS("BLAScopy",BLAScopy_(&blen,(PetscScalar *)b,&one,(PetscScalar *)a,&one)); 1950d382aafbSBarry Smith #elif defined(PETSC_PREFER_FORTRAN_FORMEMCPY) 1951d382aafbSBarry Smith fortrancopy_(&len,(PetscScalar*)b,(PetscScalar*)a); 1952d382aafbSBarry Smith #else 1953d382aafbSBarry Smith size_t i; 1954d382aafbSBarry Smith PetscScalar *x = (PetscScalar*)b, *y = (PetscScalar*)a; 1955d382aafbSBarry Smith for (i=0; i<len; i++) y[i] = x[i]; 1956d382aafbSBarry Smith #endif 1957d382aafbSBarry Smith } else { 1958d382aafbSBarry Smith memcpy((char*)(a),(char*)(b),n); 1959d382aafbSBarry Smith } 1960d382aafbSBarry Smith #else 1961d382aafbSBarry Smith memcpy((char*)(a),(char*)(b),n); 1962d382aafbSBarry Smith #endif 1963d382aafbSBarry Smith } 1964d382aafbSBarry Smith PetscFunctionReturn(0); 1965d382aafbSBarry Smith } 1966d382aafbSBarry Smith 1967d382aafbSBarry Smith /*@C 1968d382aafbSBarry Smith PetscMemzero - Zeros the specified memory. 1969d382aafbSBarry Smith 1970d382aafbSBarry Smith Not Collective 1971d382aafbSBarry Smith 1972d382aafbSBarry Smith Input Parameters: 1973d382aafbSBarry Smith + a - pointer to beginning memory location 1974d382aafbSBarry Smith - n - length (in bytes) of memory to initialize 1975d382aafbSBarry Smith 1976d382aafbSBarry Smith Level: intermediate 1977d382aafbSBarry Smith 1978d382aafbSBarry Smith Compile Option: 1979d382aafbSBarry Smith PETSC_PREFER_BZERO - on certain machines (the IBM RS6000) the bzero() routine happens 1980d382aafbSBarry Smith to be faster than the memset() routine. This flag causes the bzero() routine to be used. 1981d382aafbSBarry Smith 1982503cfb0cSBarry Smith Developer Note: this is inlined for fastest performance 1983503cfb0cSBarry Smith 1984d382aafbSBarry Smith Concepts: memory^zeroing 1985d382aafbSBarry Smith Concepts: zeroing^memory 1986d382aafbSBarry Smith 1987d382aafbSBarry Smith .seealso: PetscMemcpy() 1988d382aafbSBarry Smith @*/ 19897087cfbeSBarry Smith PETSC_STATIC_INLINE PetscErrorCode PetscMemzero(void *a,size_t n) 1990d382aafbSBarry Smith { 1991d382aafbSBarry Smith if (n > 0) { 1992d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 1993e32f2f54SBarry Smith if (!a) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_NULL,"Trying to zero at a null pointer"); 1994d382aafbSBarry Smith #endif 1995d382aafbSBarry Smith #if defined(PETSC_PREFER_ZERO_FOR_MEMZERO) 1996d382aafbSBarry Smith if (!(((long) a) % sizeof(PetscScalar)) && !(n % sizeof(PetscScalar))) { 1997d382aafbSBarry Smith size_t i,len = n/sizeof(PetscScalar); 1998d382aafbSBarry Smith PetscScalar *x = (PetscScalar*)a; 1999d382aafbSBarry Smith for (i=0; i<len; i++) x[i] = 0.0; 2000d382aafbSBarry Smith } else { 2001d382aafbSBarry Smith #elif defined(PETSC_PREFER_FORTRAN_FOR_MEMZERO) 2002d382aafbSBarry Smith if (!(((long) a) % sizeof(PetscScalar)) && !(n % sizeof(PetscScalar))) { 2003d382aafbSBarry Smith PetscInt len = n/sizeof(PetscScalar); 2004d382aafbSBarry Smith fortranzero_(&len,(PetscScalar*)a); 2005d382aafbSBarry Smith } else { 2006d382aafbSBarry Smith #endif 2007d382aafbSBarry Smith #if defined(PETSC_PREFER_BZERO) 2008d382aafbSBarry Smith bzero((char *)a,n); 2009d382aafbSBarry Smith #else 2010d382aafbSBarry Smith memset((char*)a,0,n); 2011d382aafbSBarry Smith #endif 2012d382aafbSBarry Smith #if defined(PETSC_PREFER_ZERO_FOR_MEMZERO) || defined(PETSC_PREFER_FORTRAN_FOR_MEMZERO) 2013d382aafbSBarry Smith } 2014d382aafbSBarry Smith #endif 2015d382aafbSBarry Smith } 2016d382aafbSBarry Smith return 0; 2017d382aafbSBarry Smith } 2018d382aafbSBarry Smith 2019d382aafbSBarry Smith /*MC 2020d382aafbSBarry Smith PetscPrefetchBlock - Prefetches a block of memory 2021d382aafbSBarry Smith 2022eca87e8dSBarry Smith Synopsis: 2023aaa7dc30SBarry Smith #include <petscsys.h> 2024eca87e8dSBarry Smith void PetscPrefetchBlock(const anytype *a,size_t n,int rw,int t) 2025eca87e8dSBarry Smith 2026d382aafbSBarry Smith Not Collective 2027d382aafbSBarry Smith 2028d382aafbSBarry Smith Input Parameters: 2029d382aafbSBarry Smith + a - pointer to first element to fetch (any type but usually PetscInt or PetscScalar) 2030d382aafbSBarry Smith . n - number of elements to fetch 2031d382aafbSBarry Smith . rw - 1 if the memory will be written to, otherwise 0 (ignored by many processors) 203250d8bf02SJed Brown - t - temporal locality (PETSC_PREFETCH_HINT_{NTA,T0,T1,T2}), see note 2033d382aafbSBarry Smith 2034d382aafbSBarry Smith Level: developer 2035d382aafbSBarry Smith 2036d382aafbSBarry Smith Notes: 2037d382aafbSBarry Smith The last two arguments (rw and t) must be compile-time constants. 2038d382aafbSBarry Smith 203950d8bf02SJed Brown Adopting Intel's x86/x86-64 conventions, there are four levels of temporal locality. Not all architectures offer 204050d8bf02SJed Brown equivalent locality hints, but the following macros are always defined to their closest analogue. 204150d8bf02SJed Brown + PETSC_PREFETCH_HINT_NTA - Non-temporal. Prefetches directly to L1, evicts to memory (skips higher level cache unless it was already there when prefetched). 204263cf1ef0SJed Brown . PETSC_PREFETCH_HINT_T0 - Fetch to all levels of cache and evict to the closest level. Use this when the memory will be reused regularly despite necessary eviction from L1. 204363cf1ef0SJed Brown . PETSC_PREFETCH_HINT_T1 - Fetch to level 2 and higher (not L1). 204463cf1ef0SJed Brown - PETSC_PREFETCH_HINT_T2 - Fetch to high-level cache only. (On many systems, T0 and T1 are equivalent.) 2045d382aafbSBarry Smith 2046d382aafbSBarry Smith This function does nothing on architectures that do not support prefetch and never errors (even if passed an invalid 2047d382aafbSBarry Smith address). 2048d382aafbSBarry Smith 2049d382aafbSBarry Smith Concepts: memory 2050d382aafbSBarry Smith M*/ 2051d382aafbSBarry Smith #define PetscPrefetchBlock(a,n,rw,t) do { \ 2052d382aafbSBarry Smith const char *_p = (const char*)(a),*_end = (const char*)((a)+(n)); \ 2053d382aafbSBarry Smith for ( ; _p < _end; _p += PETSC_LEVEL1_DCACHE_LINESIZE) PETSC_Prefetch(_p,(rw),(t)); \ 2054d382aafbSBarry Smith } while (0) 2055d382aafbSBarry Smith 2056d382aafbSBarry Smith /* 2057d382aafbSBarry Smith Determine if some of the kernel computation routines use 2058d382aafbSBarry Smith Fortran (rather than C) for the numerical calculations. On some machines 2059d382aafbSBarry Smith and compilers (like complex numbers) the Fortran version of the routines 2060d382aafbSBarry Smith is faster than the C/C++ versions. The flag --with-fortran-kernels 2061e2e64c6bSBarry Smith should be used with ./configure to turn these on. 2062d382aafbSBarry Smith */ 2063d382aafbSBarry Smith #if defined(PETSC_USE_FORTRAN_KERNELS) 2064d382aafbSBarry Smith 2065d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MULTCRL) 2066d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MULTCRL 2067d382aafbSBarry Smith #endif 2068d382aafbSBarry Smith 20695a11e1b2SBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MULTAIJPERM) 20705a11e1b2SBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MULTAIJPERM 2071d382aafbSBarry Smith #endif 2072d382aafbSBarry Smith 2073d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MULTAIJ) 2074d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MULTAIJ 2075d382aafbSBarry Smith #endif 2076d382aafbSBarry Smith 2077d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MULTTRANSPOSEAIJ) 2078d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MULTTRANSPOSEAIJ 2079d382aafbSBarry Smith #endif 2080d382aafbSBarry Smith 2081d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_NORM) 2082d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_NORM 2083d382aafbSBarry Smith #endif 2084d382aafbSBarry Smith 2085d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MAXPY) 2086d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MAXPY 2087d382aafbSBarry Smith #endif 2088d382aafbSBarry Smith 2089d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_SOLVEAIJ) 2090d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_SOLVEAIJ 2091d382aafbSBarry Smith #endif 2092d382aafbSBarry Smith 2093d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_RELAXAIJ) 2094d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_RELAXAIJ 2095d382aafbSBarry Smith #endif 2096d382aafbSBarry Smith 2097d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_SOLVEBAIJ) 2098d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_SOLVEBAIJ 2099d382aafbSBarry Smith #endif 2100d382aafbSBarry Smith 2101d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MULTADDAIJ) 2102d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MULTADDAIJ 2103d382aafbSBarry Smith #endif 2104d382aafbSBarry Smith 2105d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MDOT) 2106d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MDOT 2107d382aafbSBarry Smith #endif 2108d382aafbSBarry Smith 2109d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_XTIMESY) 2110d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_XTIMESY 2111d382aafbSBarry Smith #endif 2112d382aafbSBarry Smith 2113d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_AYPX) 2114d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_AYPX 2115d382aafbSBarry Smith #endif 2116d382aafbSBarry Smith 2117d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_WAXPY) 2118d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_WAXPY 2119d382aafbSBarry Smith #endif 2120d382aafbSBarry Smith 2121d382aafbSBarry Smith #endif 2122d382aafbSBarry Smith 2123d382aafbSBarry Smith /* 2124d382aafbSBarry Smith Macros for indicating code that should be compiled with a C interface, 2125d382aafbSBarry Smith rather than a C++ interface. Any routines that are dynamically loaded 2126d382aafbSBarry Smith (such as the PCCreate_XXX() routines) must be wrapped so that the name 2127d382aafbSBarry Smith mangler does not change the functions symbol name. This just hides the 2128d382aafbSBarry Smith ugly extern "C" {} wrappers. 2129d382aafbSBarry Smith */ 2130d382aafbSBarry Smith #if defined(__cplusplus) 2131d382aafbSBarry Smith #define EXTERN_C_BEGIN extern "C" { 2132d382aafbSBarry Smith #define EXTERN_C_END } 2133d382aafbSBarry Smith #else 2134d382aafbSBarry Smith #define EXTERN_C_BEGIN 2135d382aafbSBarry Smith #define EXTERN_C_END 2136d382aafbSBarry Smith #endif 2137d382aafbSBarry Smith 2138d382aafbSBarry Smith /* --------------------------------------------------------------------*/ 2139d382aafbSBarry Smith 2140d382aafbSBarry Smith /*MC 2141d382aafbSBarry Smith MPI_Comm - the basic object used by MPI to determine which processes are involved in a 2142d382aafbSBarry Smith communication 2143d382aafbSBarry Smith 2144d382aafbSBarry Smith Level: beginner 2145d382aafbSBarry Smith 2146d382aafbSBarry Smith Note: This manual page is a place-holder because MPICH does not have a manual page for MPI_Comm 2147d382aafbSBarry Smith 2148d382aafbSBarry Smith .seealso: PETSC_COMM_WORLD, PETSC_COMM_SELF 2149d382aafbSBarry Smith M*/ 2150d382aafbSBarry Smith 2151d382aafbSBarry Smith /*MC 2152d382aafbSBarry Smith PetscScalar - PETSc type that represents either a double precision real number, a double precision 2153d382aafbSBarry Smith complex number, a single precision real number, a long double or an int - if the code is configured 2154d382aafbSBarry Smith with --with-scalar-type=real,complex --with-precision=single,double,longdouble,int,matsingle 2155d382aafbSBarry Smith 2156d382aafbSBarry Smith 2157d382aafbSBarry Smith Level: beginner 2158d382aafbSBarry Smith 2159d382aafbSBarry Smith .seealso: PetscReal, PassiveReal, PassiveScalar, MPIU_SCALAR, PetscInt 2160d382aafbSBarry Smith M*/ 2161d382aafbSBarry Smith 2162d382aafbSBarry Smith /*MC 21638619c96cSJed Brown PetscComplex - PETSc type that represents a complex number with precision matching that of PetscReal. 21648619c96cSJed Brown 21658619c96cSJed Brown Synopsis: 21668619c96cSJed Brown #include <petscsys.h> 21678619c96cSJed Brown PetscComplex number = 1. + 2.*PETSC_i; 21688619c96cSJed Brown 21698619c96cSJed Brown Level: beginner 21708619c96cSJed Brown 21718619c96cSJed Brown Note: 21728cd53115SBarry Smith Complex numbers are automatically available if PETSc was able to find a working complex implementation 21738619c96cSJed Brown 21748619c96cSJed Brown .seealso: PetscReal, PetscComplex, MPIU_COMPLEX, PetscInt, PETSC_i 21758619c96cSJed Brown M*/ 21768619c96cSJed Brown 21778619c96cSJed Brown /*MC 2178d382aafbSBarry Smith PetscReal - PETSc type that represents a real number version of PetscScalar 2179d382aafbSBarry Smith 2180d382aafbSBarry Smith Level: beginner 2181d382aafbSBarry Smith 2182d382aafbSBarry Smith .seealso: PetscScalar, PassiveReal, PassiveScalar 2183d382aafbSBarry Smith M*/ 2184d382aafbSBarry Smith 2185d382aafbSBarry Smith /*MC 2186d382aafbSBarry Smith PassiveScalar - PETSc type that represents a PetscScalar 2187d382aafbSBarry Smith Level: beginner 2188d382aafbSBarry Smith 2189d382aafbSBarry Smith This is the same as a PetscScalar except in code that is automatically differentiated it is 2190d382aafbSBarry Smith treated as a constant (not an indendent or dependent variable) 2191d382aafbSBarry Smith 2192d382aafbSBarry Smith .seealso: PetscReal, PassiveReal, PetscScalar 2193d382aafbSBarry Smith M*/ 2194d382aafbSBarry Smith 2195d382aafbSBarry Smith /*MC 2196d382aafbSBarry Smith PassiveReal - PETSc type that represents a PetscReal 2197d382aafbSBarry Smith 2198d382aafbSBarry Smith Level: beginner 2199d382aafbSBarry Smith 2200d382aafbSBarry Smith This is the same as a PetscReal except in code that is automatically differentiated it is 2201d382aafbSBarry Smith treated as a constant (not an indendent or dependent variable) 2202d382aafbSBarry Smith 2203d382aafbSBarry Smith .seealso: PetscScalar, PetscReal, PassiveScalar 2204d382aafbSBarry Smith M*/ 2205d382aafbSBarry Smith 2206d382aafbSBarry Smith /*MC 2207d382aafbSBarry Smith MPIU_SCALAR - MPI datatype corresponding to PetscScalar 2208d382aafbSBarry Smith 2209d382aafbSBarry Smith Level: beginner 2210d382aafbSBarry Smith 2211d382aafbSBarry Smith Note: In MPI calls that require an MPI datatype that matches a PetscScalar or array of PetscScalars 2212d382aafbSBarry Smith pass this value 2213d382aafbSBarry Smith 2214d382aafbSBarry Smith .seealso: PetscReal, PassiveReal, PassiveScalar, PetscScalar, MPIU_INT 2215d382aafbSBarry Smith M*/ 2216d382aafbSBarry Smith 2217d382aafbSBarry Smith #if defined(PETSC_HAVE_MPIIO) 2218d382aafbSBarry Smith #if !defined(PETSC_WORDS_BIGENDIAN) 2219014dd563SJed Brown PETSC_EXTERN PetscErrorCode MPIU_File_write_all(MPI_File,void*,PetscMPIInt,MPI_Datatype,MPI_Status*); 2220014dd563SJed Brown PETSC_EXTERN PetscErrorCode MPIU_File_read_all(MPI_File,void*,PetscMPIInt,MPI_Datatype,MPI_Status*); 2221d382aafbSBarry Smith #else 2222d382aafbSBarry Smith #define MPIU_File_write_all(a,b,c,d,e) MPI_File_write_all(a,b,c,d,e) 2223d382aafbSBarry Smith #define MPIU_File_read_all(a,b,c,d,e) MPI_File_read_all(a,b,c,d,e) 2224d382aafbSBarry Smith #endif 2225d382aafbSBarry Smith #endif 2226d382aafbSBarry Smith 2227d382aafbSBarry Smith /* the following petsc_static_inline require petscerror.h */ 2228d382aafbSBarry Smith 2229d382aafbSBarry Smith /* Limit MPI to 32-bits */ 2230d382aafbSBarry Smith #define PETSC_MPI_INT_MAX 2147483647 2231d382aafbSBarry Smith #define PETSC_MPI_INT_MIN -2147483647 2232d382aafbSBarry Smith /* Limit BLAS to 32-bits */ 2233d382aafbSBarry Smith #define PETSC_BLAS_INT_MAX 2147483647 2234d382aafbSBarry Smith #define PETSC_BLAS_INT_MIN -2147483647 2235d382aafbSBarry Smith 2236c5df96a5SBarry Smith #undef __FUNCT__ 2237c5df96a5SBarry Smith #define __FUNCT__ "PetscBLASIntCast" 223861b0d812SBarry Smith /*@C 223961b0d812SBarry Smith PetscBLASIntCast - casts a PetscInt (which may be 64 bits in size) to a PetscBLASInt (which may be 32 bits in size), generates an 224061b0d812SBarry Smith error if the PetscBLASInt is not large enough to hold the number. 224161b0d812SBarry Smith 224261b0d812SBarry Smith Not Collective 224361b0d812SBarry Smith 224461b0d812SBarry Smith Input Parameter: 224561b0d812SBarry Smith . a - the PetscInt value 224661b0d812SBarry Smith 224761b0d812SBarry Smith Output Parameter: 224861b0d812SBarry Smith . b - the resulting PetscBLASInt value 224961b0d812SBarry Smith 225061b0d812SBarry Smith Level: advanced 225161b0d812SBarry Smith 225261b0d812SBarry Smith .seealso: PetscBLASInt, PetscMPIInt, PetscInt, PetscMPIIntCast() 225361b0d812SBarry Smith @*/ 2254c5df96a5SBarry Smith PETSC_STATIC_INLINE PetscErrorCode PetscBLASIntCast(PetscInt a,PetscBLASInt *b) 2255c5df96a5SBarry Smith { 2256c5df96a5SBarry Smith PetscFunctionBegin; 2257ab7117d1SBarry Smith *b = (PetscBLASInt)(a); 2258c5df96a5SBarry Smith #if defined(PETSC_USE_64BIT_INDICES) && !defined(PETSC_HAVE_64BIT_BLAS_INDICES) 2259c5df96a5SBarry Smith if ((a) > PETSC_BLAS_INT_MAX) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Array too long for BLAS/LAPACK"); 2260c5df96a5SBarry Smith #endif 2261c5df96a5SBarry Smith PetscFunctionReturn(0); 2262c5df96a5SBarry Smith } 2263c5df96a5SBarry Smith 22644dc2109aSBarry Smith #undef __FUNCT__ 22654dc2109aSBarry Smith #define __FUNCT__ "PetscMPIIntCast" 226661b0d812SBarry Smith /*@C 226761b0d812SBarry Smith PetscMPIIntCast - casts a PetscInt (which may be 64 bits in size) to a PetscMPIInt (which may be 32 bits in size), generates an 226861b0d812SBarry Smith error if the PetscMPIInt is not large enough to hold the number. 226961b0d812SBarry Smith 227061b0d812SBarry Smith Not Collective 227161b0d812SBarry Smith 227261b0d812SBarry Smith Input Parameter: 227361b0d812SBarry Smith . a - the PetscInt value 227461b0d812SBarry Smith 227561b0d812SBarry Smith Output Parameter: 227661b0d812SBarry Smith . b - the resulting PetscMPIInt value 227761b0d812SBarry Smith 227861b0d812SBarry Smith Level: advanced 227961b0d812SBarry Smith 228061b0d812SBarry Smith .seealso: PetscBLASInt, PetscMPIInt, PetscInt, PetscBLASIntCast() 228161b0d812SBarry Smith @*/ 22824dc2109aSBarry Smith PETSC_STATIC_INLINE PetscErrorCode PetscMPIIntCast(PetscInt a,PetscMPIInt *b) 22834dc2109aSBarry Smith { 22844dc2109aSBarry Smith PetscFunctionBegin; 2285ab7117d1SBarry Smith *b = (PetscMPIInt)(a); 22864dc2109aSBarry Smith #if defined(PETSC_USE_64BIT_INDICES) 22874dc2109aSBarry Smith if ((a) > PETSC_MPI_INT_MAX) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Array too long for MPI"); 22884dc2109aSBarry Smith #endif 22894dc2109aSBarry Smith PetscFunctionReturn(0); 22904dc2109aSBarry Smith } 22914dc2109aSBarry Smith 2292c5df96a5SBarry Smith 2293d382aafbSBarry Smith /* 22942981ebdbSBarry Smith The IBM include files define hz, here we hide it so that it may be used as a regular user variable. 2295d382aafbSBarry Smith */ 2296d382aafbSBarry Smith #if defined(hz) 2297d382aafbSBarry Smith #undef hz 2298d382aafbSBarry Smith #endif 2299d382aafbSBarry Smith 2300d382aafbSBarry Smith /* For arrays that contain filenames or paths */ 2301d382aafbSBarry Smith 2302d382aafbSBarry Smith 2303d382aafbSBarry Smith #if defined(PETSC_HAVE_LIMITS_H) 2304d382aafbSBarry Smith #include <limits.h> 2305d382aafbSBarry Smith #endif 2306d382aafbSBarry Smith #if defined(PETSC_HAVE_SYS_PARAM_H) 2307d382aafbSBarry Smith #include <sys/param.h> 2308d382aafbSBarry Smith #endif 2309d382aafbSBarry Smith #if defined(PETSC_HAVE_SYS_TYPES_H) 2310d382aafbSBarry Smith #include <sys/types.h> 2311d382aafbSBarry Smith #endif 2312d382aafbSBarry Smith #if defined(MAXPATHLEN) 2313d382aafbSBarry Smith # define PETSC_MAX_PATH_LEN MAXPATHLEN 2314d382aafbSBarry Smith #elif defined(MAX_PATH) 2315d382aafbSBarry Smith # define PETSC_MAX_PATH_LEN MAX_PATH 2316d382aafbSBarry Smith #elif defined(_MAX_PATH) 2317d382aafbSBarry Smith # define PETSC_MAX_PATH_LEN _MAX_PATH 2318d382aafbSBarry Smith #else 2319d382aafbSBarry Smith # define PETSC_MAX_PATH_LEN 4096 2320d382aafbSBarry Smith #endif 2321d382aafbSBarry Smith 2322d382aafbSBarry Smith /*MC 2323d382aafbSBarry Smith 2324d382aafbSBarry Smith UsingFortran - Fortran can be used with PETSc in four distinct approaches 2325d382aafbSBarry Smith 2326d382aafbSBarry Smith $ 1) classic Fortran 77 style 2327af0996ceSBarry Smith $#include "petsc/finclude/petscXXX.h" to work with material from the XXX component of PETSc 2328d382aafbSBarry Smith $ XXX variablename 2329d382aafbSBarry Smith $ You cannot use this approach if you wish to use the Fortran 90 specific PETSc routines 2330d382aafbSBarry Smith $ which end in F90; such as VecGetArrayF90() 2331d382aafbSBarry Smith $ 2332d382aafbSBarry Smith $ 2) classic Fortran 90 style 2333af0996ceSBarry Smith $#include "petsc/finclude/petscXXX.h" 2334af0996ceSBarry Smith $#include "petsc/finclude/petscXXX.h90" to work with material from the XXX component of PETSc 2335d382aafbSBarry Smith $ XXX variablename 2336d382aafbSBarry Smith $ 2337d382aafbSBarry Smith $ 3) Using Fortran modules 2338af0996ceSBarry Smith $#include "petsc/finclude/petscXXXdef.h" 2339d382aafbSBarry Smith $ use petscXXXX 2340d382aafbSBarry Smith $ XXX variablename 2341d382aafbSBarry Smith $ 2342d382aafbSBarry Smith $ 4) Use Fortran modules and Fortran data types for PETSc types 2343af0996ceSBarry Smith $#include "petsc/finclude/petscXXXdef.h" 2344d382aafbSBarry Smith $ use petscXXXX 2345d382aafbSBarry Smith $ type(XXX) variablename 2346e2e64c6bSBarry Smith $ To use this approach you must ./configure PETSc with the additional 2347d382aafbSBarry Smith $ option --with-fortran-datatypes You cannot use the type(XXX) declaration approach without using Fortran modules 2348d382aafbSBarry Smith 2349d382aafbSBarry Smith Finally if you absolutely do not want to use any #include you can use either 2350d382aafbSBarry Smith 2351d382aafbSBarry Smith $ 3a) skip the #include BUT you cannot use any PETSc data type names like Vec, Mat, PetscInt, PetscErrorCode etc 2352d382aafbSBarry Smith $ and you must declare the variables as integer, for example 2353d382aafbSBarry Smith $ integer variablename 2354d382aafbSBarry Smith $ 2355d382aafbSBarry Smith $ 4a) skip the #include, you use the object types like type(Vec) type(Mat) but cannot use the data type 2356d382aafbSBarry Smith $ names like PetscErrorCode, PetscInt etc. again for those you must use integer 2357d382aafbSBarry Smith 2358d382aafbSBarry Smith We recommend either 2 or 3. Approaches 2 and 3 provide type checking for most PETSc function calls; 4 has type checking 2359d382aafbSBarry Smith for only a few PETSc functions. 2360d382aafbSBarry Smith 2361d382aafbSBarry Smith Fortran type checking with interfaces is strick, this means you cannot pass a scalar value when an array value 2362d382aafbSBarry Smith is expected (even though it is legal Fortran). For example when setting a single value in a matrix with MatSetValues() 2363d382aafbSBarry Smith you cannot have something like 2364d382aafbSBarry Smith $ PetscInt row,col 2365d382aafbSBarry Smith $ PetscScalar val 2366d382aafbSBarry Smith $ ... 2367d382aafbSBarry Smith $ call MatSetValues(mat,1,row,1,col,val,INSERT_VALUES,ierr) 2368d382aafbSBarry Smith You must instead have 2369d382aafbSBarry Smith $ PetscInt row(1),col(1) 2370d382aafbSBarry Smith $ PetscScalar val(1) 2371d382aafbSBarry Smith $ ... 2372d382aafbSBarry Smith $ call MatSetValues(mat,1,row,1,col,val,INSERT_VALUES,ierr) 2373d382aafbSBarry Smith 2374d382aafbSBarry Smith 2375d382aafbSBarry Smith See the example src/vec/vec/examples/tutorials/ex20f90.F90 for an example that can use all four approaches 2376d382aafbSBarry Smith 2377af0996ceSBarry Smith Developer Notes: The petsc/finclude/petscXXXdef.h contain all the #defines (would be typedefs in C code) these 2378af0996ceSBarry Smith automatically include their predecessors; for example petsc/finclude/petscvecdef.h includes petsc/finclude/petscisdef.h 2379d382aafbSBarry Smith 2380af0996ceSBarry Smith The petsc/finclude/petscXXXX.h contain all the parameter statements for that package. These automatically include 2381af0996ceSBarry Smith their petsc/finclude/petscXXXdef.h file but DO NOT automatically include their predecessors; for example 2382af0996ceSBarry Smith petsc/finclude/petscvec.h does NOT automatically include petsc/finclude/petscis.h 2383d382aafbSBarry Smith 2384af0996ceSBarry Smith The petsc/finclude/ftn-custom/petscXXXdef.h90 are not intended to be used directly in code, they define the 2385e2e64c6bSBarry Smith Fortran data type type(XXX) (for example type(Vec)) when PETSc is ./configure with the --with-fortran-datatypes option. 2386d382aafbSBarry Smith 2387af0996ceSBarry Smith The petsc/finclude/ftn-custom/petscXXX.h90 (not included directly by code) contain interface definitions for 2388d382aafbSBarry Smith the PETSc Fortran stubs that have different bindings then their C version (for example VecGetArrayF90). 2389d382aafbSBarry Smith 2390af0996ceSBarry Smith The petsc/finclude/ftn-auto/petscXXX.h90 (not included directly by code) contain interface definitions generated 2391d382aafbSBarry Smith automatically by "make allfortranstubs". 2392d382aafbSBarry Smith 2393af0996ceSBarry Smith The petsc/finclude/petscXXX.h90 includes the custom petsc/finclude/ftn-custom/petscXXX.h90 and if ./configure 2394af0996ceSBarry Smith was run with --with-fortran-interfaces it also includes the petsc/finclude/ftn-auto/petscXXX.h90 These DO NOT automatically 2395d382aafbSBarry Smith include their predecessors 2396d382aafbSBarry Smith 2397d382aafbSBarry Smith Level: beginner 2398d382aafbSBarry Smith 2399d382aafbSBarry Smith M*/ 2400d382aafbSBarry Smith 2401014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetArchType(char[],size_t); 2402014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetHostName(char[],size_t); 2403014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetUserName(char[],size_t); 2404014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetProgramName(char[],size_t); 2405014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSetProgramName(const char[]); 2406014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetDate(char[],size_t); 240727710113SBarry Smith PETSC_EXTERN PetscErrorCode PetscGetVersion(char[], size_t); 2408d382aafbSBarry Smith 2409014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortInt(PetscInt,PetscInt[]); 2410014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortRemoveDupsInt(PetscInt*,PetscInt[]); 241160e03357SMatthew G Knepley PETSC_EXTERN PetscErrorCode PetscFindInt(PetscInt, PetscInt, const PetscInt[], PetscInt*); 2412014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortIntWithPermutation(PetscInt,const PetscInt[],PetscInt[]); 2413014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortStrWithPermutation(PetscInt,const char*[],PetscInt[]); 2414014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortIntWithArray(PetscInt,PetscInt[],PetscInt[]); 2415014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortIntWithArrayPair(PetscInt,PetscInt*,PetscInt*,PetscInt*); 241617d7d925SStefano Zampini PETSC_EXTERN PetscErrorCode PetscSortMPIInt(PetscInt,PetscMPIInt[]); 241717d7d925SStefano Zampini PETSC_EXTERN PetscErrorCode PetscSortRemoveDupsMPIInt(PetscInt*,PetscMPIInt[]); 2418014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortMPIIntWithArray(PetscMPIInt,PetscMPIInt[],PetscMPIInt[]); 2419014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortIntWithScalarArray(PetscInt,PetscInt[],PetscScalar[]); 242017df18f2SToby Isaac PETSC_EXTERN PetscErrorCode PetscSortIntWithDataArray(PetscInt,PetscInt[],void*,size_t,void*); 2421014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortReal(PetscInt,PetscReal[]); 2422014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortRealWithPermutation(PetscInt,const PetscReal[],PetscInt[]); 2423745b41b2SMatthew G. Knepley PETSC_EXTERN PetscErrorCode PetscSortRemoveDupsReal(PetscInt*,PetscReal[]); 2424014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortSplit(PetscInt,PetscInt,PetscScalar[],PetscInt[]); 2425014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortSplitReal(PetscInt,PetscInt,PetscReal[],PetscInt[]); 2426014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscProcessTree(PetscInt,const PetscBool [],const PetscInt[],PetscInt*,PetscInt**,PetscInt**,PetscInt**,PetscInt**); 2427014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMergeIntArrayPair(PetscInt,const PetscInt*,const PetscInt*,PetscInt,const PetscInt*,const PetscInt*,PetscInt*,PetscInt**,PetscInt**); 242821e72a00SBarry Smith PETSC_EXTERN PetscErrorCode PetscMergeIntArray(PetscInt,const PetscInt*,PetscInt,const PetscInt*,PetscInt*,PetscInt**); 2429e498c390SJed Brown PETSC_EXTERN PetscErrorCode PetscMergeMPIIntArray(PetscInt,const PetscMPIInt[],PetscInt,const PetscMPIInt[],PetscInt*,PetscMPIInt**); 2430d382aafbSBarry Smith 2431014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSetDisplay(void); 2432014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetDisplay(char[],size_t); 2433d382aafbSBarry Smith 243476bdecfbSBarry Smith /*J 2435d382aafbSBarry Smith PetscRandomType - String with the name of a PETSc randomizer 2436d382aafbSBarry Smith 2437d382aafbSBarry Smith Level: beginner 2438d382aafbSBarry Smith 2439e2e64c6bSBarry Smith Notes: to use the SPRNG you must have ./configure PETSc 2440d382aafbSBarry Smith with the option --download-sprng 2441d382aafbSBarry Smith 24428f6c3df8SBarry Smith .seealso: PetscRandomSetType(), PetscRandom, PetscRandomCreate() 244376bdecfbSBarry Smith J*/ 244419fd82e9SBarry Smith typedef const char* PetscRandomType; 2445d382aafbSBarry Smith #define PETSCRAND "rand" 2446d382aafbSBarry Smith #define PETSCRAND48 "rand48" 2447d382aafbSBarry Smith #define PETSCSPRNG "sprng" 2448c5e4d11fSDmitry Karpeev #define PETSCRANDER48 "rander48" 2449d382aafbSBarry Smith 2450d382aafbSBarry Smith /* Logging support */ 2451014dd563SJed Brown PETSC_EXTERN PetscClassId PETSC_RANDOM_CLASSID; 2452d382aafbSBarry Smith 2453607a6623SBarry Smith PETSC_EXTERN PetscErrorCode PetscRandomInitializePackage(void); 2454d382aafbSBarry Smith 2455d382aafbSBarry Smith /*S 2456d382aafbSBarry Smith PetscRandom - Abstract PETSc object that manages generating random numbers 2457d382aafbSBarry Smith 2458d382aafbSBarry Smith Level: intermediate 2459d382aafbSBarry Smith 2460d382aafbSBarry Smith Concepts: random numbers 2461d382aafbSBarry Smith 2462d382aafbSBarry Smith .seealso: PetscRandomCreate(), PetscRandomGetValue(), PetscRandomType 2463d382aafbSBarry Smith S*/ 2464d382aafbSBarry Smith typedef struct _p_PetscRandom* PetscRandom; 2465d382aafbSBarry Smith 2466d382aafbSBarry Smith /* Dynamic creation and loading functions */ 2467140e18c1SBarry Smith PETSC_EXTERN PetscFunctionList PetscRandomList; 2468d382aafbSBarry Smith 2469bdf89e91SBarry Smith PETSC_EXTERN PetscErrorCode PetscRandomRegister(const char[],PetscErrorCode (*)(PetscRandom)); 247019fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode PetscRandomSetType(PetscRandom, PetscRandomType); 2471014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomSetFromOptions(PetscRandom); 247219fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode PetscRandomGetType(PetscRandom, PetscRandomType*); 2473685405a1SBarry Smith PETSC_STATIC_INLINE PetscErrorCode PetscRandomViewFromOptions(PetscRandom A,PetscObject obj,const char name[]) {return PetscObjectViewFromOptions((PetscObject)A,obj,name);} 2474014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomView(PetscRandom,PetscViewer); 2475d382aafbSBarry Smith 2476014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomCreate(MPI_Comm,PetscRandom*); 2477014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomGetValue(PetscRandom,PetscScalar*); 2478014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomGetValueReal(PetscRandom,PetscReal*); 2479014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomGetInterval(PetscRandom,PetscScalar*,PetscScalar*); 2480014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomSetInterval(PetscRandom,PetscScalar,PetscScalar); 2481014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomSetSeed(PetscRandom,unsigned long); 2482014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomGetSeed(PetscRandom,unsigned long *); 2483014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomSeed(PetscRandom); 2484014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomDestroy(PetscRandom*); 2485d382aafbSBarry Smith 2486014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetFullPath(const char[],char[],size_t); 2487014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetRelativePath(const char[],char[],size_t); 2488014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetWorkingDirectory(char[],size_t); 2489014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetRealPath(const char[],char[]); 2490014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetHomeDirectory(char[],size_t); 2491014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscTestFile(const char[],char,PetscBool *); 2492014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscTestDirectory(const char[],char,PetscBool *); 249397540f07SSatish Balay PETSC_EXTERN PetscErrorCode PetscMkdir(const char[]); 249497540f07SSatish Balay PETSC_EXTERN PetscErrorCode PetscRMTree(const char[]); 2495d382aafbSBarry Smith 2496014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBinaryRead(int,void*,PetscInt,PetscDataType); 2497014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBinarySynchronizedRead(MPI_Comm,int,void*,PetscInt,PetscDataType); 2498014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBinarySynchronizedWrite(MPI_Comm,int,void*,PetscInt,PetscDataType,PetscBool ); 2499014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBinaryWrite(int,void*,PetscInt,PetscDataType,PetscBool ); 2500014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBinaryOpen(const char[],PetscFileMode,int *); 2501014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBinaryClose(int); 2502014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSharedTmp(MPI_Comm,PetscBool *); 2503014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSharedWorkingDirectory(MPI_Comm,PetscBool *); 2504014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetTmp(MPI_Comm,char[],size_t); 2505014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFileRetrieve(MPI_Comm,const char[],char[],size_t,PetscBool *); 2506014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscLs(MPI_Comm,const char[],char[],size_t,PetscBool *); 2507e2fc02c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscOpenSocket(const char[],int,int*); 2508d382aafbSBarry Smith 2509d382aafbSBarry Smith /* 2510d382aafbSBarry Smith In binary files variables are stored using the following lengths, 2511d382aafbSBarry Smith regardless of how they are stored in memory on any one particular 2512d382aafbSBarry Smith machine. Use these rather then sizeof() in computing sizes for 2513d382aafbSBarry Smith PetscBinarySeek(). 2514d382aafbSBarry Smith */ 2515d382aafbSBarry Smith #define PETSC_BINARY_INT_SIZE (32/8) 2516d382aafbSBarry Smith #define PETSC_BINARY_FLOAT_SIZE (32/8) 2517d382aafbSBarry Smith #define PETSC_BINARY_CHAR_SIZE (8/8) 2518d382aafbSBarry Smith #define PETSC_BINARY_SHORT_SIZE (16/8) 2519d382aafbSBarry Smith #define PETSC_BINARY_DOUBLE_SIZE (64/8) 2520d382aafbSBarry Smith #define PETSC_BINARY_SCALAR_SIZE sizeof(PetscScalar) 2521d382aafbSBarry Smith 2522d382aafbSBarry Smith /*E 2523d382aafbSBarry Smith PetscBinarySeekType - argument to PetscBinarySeek() 2524d382aafbSBarry Smith 2525d382aafbSBarry Smith Level: advanced 2526d382aafbSBarry Smith 2527d382aafbSBarry Smith .seealso: PetscBinarySeek(), PetscBinarySynchronizedSeek() 2528d382aafbSBarry Smith E*/ 2529d382aafbSBarry Smith typedef enum {PETSC_BINARY_SEEK_SET = 0,PETSC_BINARY_SEEK_CUR = 1,PETSC_BINARY_SEEK_END = 2} PetscBinarySeekType; 2530014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBinarySeek(int,off_t,PetscBinarySeekType,off_t*); 2531014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBinarySynchronizedSeek(MPI_Comm,int,off_t,PetscBinarySeekType,off_t*); 2532014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscByteSwap(void *,PetscDataType,PetscInt); 2533d382aafbSBarry Smith 2534014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSetDebugTerminal(const char[]); 2535014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSetDebugger(const char[],PetscBool ); 2536014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSetDefaultDebugger(void); 2537014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSetDebuggerFromString(const char*); 2538014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscAttachDebugger(void); 2539014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStopForDebugger(void); 2540d382aafbSBarry Smith 2541014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGatherNumberOfMessages(MPI_Comm,const PetscMPIInt[],const PetscMPIInt[],PetscMPIInt*); 2542014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGatherMessageLengths(MPI_Comm,PetscMPIInt,PetscMPIInt,const PetscMPIInt[],PetscMPIInt**,PetscMPIInt**); 2543014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGatherMessageLengths2(MPI_Comm,PetscMPIInt,PetscMPIInt,const PetscMPIInt[],const PetscMPIInt[],PetscMPIInt**,PetscMPIInt**,PetscMPIInt**); 2544014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPostIrecvInt(MPI_Comm,PetscMPIInt,PetscMPIInt,const PetscMPIInt[],const PetscMPIInt[],PetscInt***,MPI_Request**); 2545014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPostIrecvScalar(MPI_Comm,PetscMPIInt,PetscMPIInt,const PetscMPIInt[],const PetscMPIInt[],PetscScalar***,MPI_Request**); 2546cf4b5b4fSJed Brown PETSC_EXTERN PetscErrorCode PetscCommBuildTwoSided(MPI_Comm,PetscMPIInt,MPI_Datatype,PetscMPIInt,const PetscMPIInt*,const void*,PetscMPIInt*,PetscMPIInt**,void*) 2547cf4b5b4fSJed Brown PetscAttrMPIPointerWithType(6,3); 2548d815da10SJed Brown PETSC_EXTERN PetscErrorCode PetscCommBuildTwoSidedF(MPI_Comm,PetscMPIInt,MPI_Datatype,PetscMPIInt,const PetscMPIInt[],const void*,PetscMPIInt*,PetscMPIInt**,void*,PetscMPIInt, 2549d815da10SJed Brown PetscErrorCode (*send)(MPI_Comm,const PetscMPIInt[],PetscMPIInt,PetscMPIInt,void*,MPI_Request[],void*), 2550d815da10SJed Brown PetscErrorCode (*recv)(MPI_Comm,const PetscMPIInt[],PetscMPIInt,void*,MPI_Request[],void*),void *ctx) 2551d815da10SJed Brown PetscAttrMPIPointerWithType(6,3); 25526afbe7ddSJed Brown PETSC_EXTERN PetscErrorCode PetscCommBuildTwoSidedFReq(MPI_Comm,PetscMPIInt,MPI_Datatype,PetscMPIInt,const PetscMPIInt[],const void*,PetscMPIInt*,PetscMPIInt**,void*,PetscMPIInt, 25536afbe7ddSJed Brown MPI_Request**,MPI_Request**, 25546afbe7ddSJed Brown PetscErrorCode (*send)(MPI_Comm,const PetscMPIInt[],PetscMPIInt,PetscMPIInt,void*,MPI_Request[],void*), 25556afbe7ddSJed Brown PetscErrorCode (*recv)(MPI_Comm,const PetscMPIInt[],PetscMPIInt,void*,MPI_Request[],void*),void *ctx) 25566afbe7ddSJed Brown PetscAttrMPIPointerWithType(6,3); 2557d382aafbSBarry Smith 25586145cd65SJed Brown /*E 25596145cd65SJed Brown PetscBuildTwoSidedType - algorithm for setting up two-sided communication 25606145cd65SJed Brown 25616145cd65SJed Brown $ PETSC_BUILDTWOSIDED_ALLREDUCE - classical algorithm using an MPI_Allreduce with 25626145cd65SJed Brown $ a buffer of length equal to the communicator size. Not memory-scalable due to 25636145cd65SJed Brown $ the large reduction size. Requires only MPI-1. 25646145cd65SJed Brown $ PETSC_BUILDTWOSIDED_IBARRIER - nonblocking algorithm based on MPI_Issend and MPI_Ibarrier. 25656145cd65SJed Brown $ Proved communication-optimal in Hoefler, Siebert, and Lumsdaine (2010). Requires MPI-3. 25661654bf6bSJed Brown $ PETSC_BUILDTWOSIDED_REDSCATTER - similar to above, but use more optimized function 25671654bf6bSJed Brown $ that only communicates the part of the reduction that is necessary. Requires MPI-2. 25686145cd65SJed Brown 25696145cd65SJed Brown Level: developer 25706145cd65SJed Brown 25716145cd65SJed Brown .seealso: PetscCommBuildTwoSided(), PetscCommBuildTwoSidedSetType(), PetscCommBuildTwoSidedGetType() 25726145cd65SJed Brown E*/ 25736145cd65SJed Brown typedef enum { 25746145cd65SJed Brown PETSC_BUILDTWOSIDED_NOTSET = -1, 25756145cd65SJed Brown PETSC_BUILDTWOSIDED_ALLREDUCE = 0, 25761654bf6bSJed Brown PETSC_BUILDTWOSIDED_IBARRIER = 1, 257712af867fSJed Brown PETSC_BUILDTWOSIDED_REDSCATTER = 2 25786145cd65SJed Brown /* Updates here must be accompanied by updates in finclude/petscsys.h and the string array in mpits.c */ 25796145cd65SJed Brown } PetscBuildTwoSidedType; 25806145cd65SJed Brown PETSC_EXTERN const char *const PetscBuildTwoSidedTypes[]; 25816145cd65SJed Brown PETSC_EXTERN PetscErrorCode PetscCommBuildTwoSidedSetType(MPI_Comm,PetscBuildTwoSidedType); 25826145cd65SJed Brown PETSC_EXTERN PetscErrorCode PetscCommBuildTwoSidedGetType(MPI_Comm,PetscBuildTwoSidedType*); 25836145cd65SJed Brown 2584014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSSEIsEnabled(MPI_Comm,PetscBool *,PetscBool *); 2585d382aafbSBarry Smith 2586d382aafbSBarry Smith /*E 2587d382aafbSBarry Smith InsertMode - Whether entries are inserted or added into vectors or matrices 2588d382aafbSBarry Smith 2589d382aafbSBarry Smith Level: beginner 2590d382aafbSBarry Smith 2591d382aafbSBarry Smith .seealso: VecSetValues(), MatSetValues(), VecSetValue(), VecSetValuesBlocked(), 2592d382aafbSBarry Smith VecSetValuesLocal(), VecSetValuesBlockedLocal(), MatSetValuesBlocked(), 2593d382aafbSBarry Smith MatSetValuesBlockedLocal(), MatSetValuesLocal(), VecScatterBegin(), VecScatterEnd() 2594d382aafbSBarry Smith E*/ 25956fbadbe2SMatthew G Knepley typedef enum {NOT_SET_VALUES, INSERT_VALUES, ADD_VALUES, MAX_VALUES, INSERT_ALL_VALUES, ADD_ALL_VALUES, INSERT_BC_VALUES, ADD_BC_VALUES} InsertMode; 2596d382aafbSBarry Smith 2597d382aafbSBarry Smith /*MC 2598d382aafbSBarry Smith INSERT_VALUES - Put a value into a vector or matrix, overwrites any previous value 2599d382aafbSBarry Smith 2600d382aafbSBarry Smith Level: beginner 2601d382aafbSBarry Smith 2602d382aafbSBarry Smith .seealso: InsertMode, VecSetValues(), MatSetValues(), VecSetValue(), VecSetValuesBlocked(), 2603eca87e8dSBarry Smith VecSetValuesLocal(), VecSetValuesBlockedLocal(), MatSetValuesBlocked(), ADD_VALUES, 2604eca87e8dSBarry Smith MatSetValuesBlockedLocal(), MatSetValuesLocal(), VecScatterBegin(), VecScatterEnd(), MAX_VALUES 2605d382aafbSBarry Smith 2606d382aafbSBarry Smith M*/ 2607d382aafbSBarry Smith 2608d382aafbSBarry Smith /*MC 2609d382aafbSBarry Smith ADD_VALUES - Adds a value into a vector or matrix, if there previously was no value, just puts the 2610d382aafbSBarry Smith value into that location 2611d382aafbSBarry Smith 2612d382aafbSBarry Smith Level: beginner 2613d382aafbSBarry Smith 2614d382aafbSBarry Smith .seealso: InsertMode, VecSetValues(), MatSetValues(), VecSetValue(), VecSetValuesBlocked(), 2615eca87e8dSBarry Smith VecSetValuesLocal(), VecSetValuesBlockedLocal(), MatSetValuesBlocked(), INSERT_VALUES, 2616eca87e8dSBarry Smith MatSetValuesBlockedLocal(), MatSetValuesLocal(), VecScatterBegin(), VecScatterEnd(), MAX_VALUES 2617d382aafbSBarry Smith 2618d382aafbSBarry Smith M*/ 2619d382aafbSBarry Smith 2620d382aafbSBarry Smith /*MC 2621d382aafbSBarry Smith MAX_VALUES - Puts the maximum of the scattered/gathered value and the current value into each location 2622d382aafbSBarry Smith 2623d382aafbSBarry Smith Level: beginner 2624d382aafbSBarry Smith 2625d382aafbSBarry Smith .seealso: InsertMode, VecScatterBegin(), VecScatterEnd(), ADD_VALUES, INSERT_VALUES 2626d382aafbSBarry Smith 2627d382aafbSBarry Smith M*/ 2628d382aafbSBarry Smith 2629ce94432eSBarry Smith PETSC_EXTERN MPI_Comm PetscObjectComm(PetscObject); 2630ce94432eSBarry Smith 263145487dadSJed Brown typedef enum {PETSC_SUBCOMM_GENERAL=0,PETSC_SUBCOMM_CONTIGUOUS=1,PETSC_SUBCOMM_INTERLACED=2} PetscSubcommType; 263245487dadSJed Brown PETSC_EXTERN const char *const PetscSubcommTypes[]; 263345487dadSJed Brown 2634d382aafbSBarry Smith /*S 2635306c2d5bSBarry Smith PetscSubcomm - A decomposition of an MPI communicator into subcommunicators 2636306c2d5bSBarry Smith 2637306c2d5bSBarry Smith Notes: After a call to PetscSubcommSetType(), PetscSubcommSetTypeGeneral(), or PetscSubcommSetFromOptions() one may call 2638306c2d5bSBarry Smith $ PetscSubcommChild() returns the associated subcommunicator on this process 263936be1a5eSBarry Smith $ PetscSubcommContiguousParent() returns a parent communitor but with all child of the same subcommunicator having contiquous rank 2640306c2d5bSBarry Smith 2641306c2d5bSBarry Smith Sample Usage: 2642306c2d5bSBarry Smith PetscSubcommCreate() 2643306c2d5bSBarry Smith PetscSubcommSetNumber() 2644306c2d5bSBarry Smith PetscSubcommSetType(PETSC_SUBCOMM_INTERLACED); 2645306c2d5bSBarry Smith ccomm = PetscSubcommChild() 2646306c2d5bSBarry Smith PetscSubcommDestroy() 2647d382aafbSBarry Smith 2648d382aafbSBarry Smith Level: advanced 2649d382aafbSBarry Smith 2650d382aafbSBarry Smith Concepts: communicator, create 2651306c2d5bSBarry Smith 2652306c2d5bSBarry Smith Notes: 2653306c2d5bSBarry Smith $ PETSC_SUBCOMM_GENERAL - similar to MPI_Comm_split() each process sets the new communicator (color) they will belong to and the order within that communicator 2654306c2d5bSBarry Smith $ PETSC_SUBCOMM_CONTIGUOUS - each new communicator contains a set of process with contiquous ranks in the original MPI communicator 2655306c2d5bSBarry Smith $ PETSC_SUBCOMM_INTERLACED - each new communictor contains a set of processes equally far apart in rank from the others in that new communicator 2656306c2d5bSBarry Smith 2657306c2d5bSBarry Smith Examaple: Consider a communicator with six processes split into 3 subcommunicators. 2658306c2d5bSBarry Smith $ PETSC_SUBCOMM_CONTIGUOUS - the first communicator contains rank 0,1 the second rank 2,3 and the third rank 4,5 in the original ordering of the original communicator 2659306c2d5bSBarry Smith $ PETSC_SUBCOMM_INTERLACED - the first communicator contains rank 0,3, the second 1,4 and the third 2,5 2660306c2d5bSBarry Smith 2661306c2d5bSBarry Smith Developer Notes: This is used in objects such as PCREDUNDANT() to manage the subcommunicators on which the redundant computations 2662306c2d5bSBarry Smith are performed. 2663306c2d5bSBarry Smith 2664306c2d5bSBarry Smith 2665306c2d5bSBarry Smith .seealso: PetscSubcommCreate(), PetscSubcommSetNumber(), PetscSubcommSetType(), PetscSubcommView(), PetscSubcommSetFromOptions() 2666306c2d5bSBarry Smith 2667d382aafbSBarry Smith S*/ 2668d382aafbSBarry Smith typedef struct _n_PetscSubcomm* PetscSubcomm; 2669d382aafbSBarry Smith 2670d382aafbSBarry Smith struct _n_PetscSubcomm { 2671d382aafbSBarry Smith MPI_Comm parent; /* parent communicator */ 2672d382aafbSBarry Smith MPI_Comm dupparent; /* duplicate parent communicator, under which the processors of this subcomm have contiguous rank */ 2673306c2d5bSBarry Smith MPI_Comm child; /* the sub-communicator */ 267445487dadSJed Brown PetscMPIInt n; /* num of subcommunicators under the parent communicator */ 267545487dadSJed Brown PetscMPIInt color; /* color of processors belong to this communicator */ 2676708d824cSJed Brown PetscMPIInt *subsize; /* size of subcommunicator[color] */ 267745487dadSJed Brown PetscSubcommType type; 2678d382aafbSBarry Smith }; 2679d382aafbSBarry Smith 2680c5e4d11fSDmitry Karpeev PETSC_STATIC_INLINE MPI_Comm PetscSubcommParent(PetscSubcomm scomm) {return scomm->parent;} 2681306c2d5bSBarry Smith PETSC_STATIC_INLINE MPI_Comm PetscSubcommChild(PetscSubcomm scomm) {return scomm->child;} 268236be1a5eSBarry Smith PETSC_STATIC_INLINE MPI_Comm PetscSubcommContiguousParent(PetscSubcomm scomm) {return scomm->dupparent;} 2683014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSubcommCreate(MPI_Comm,PetscSubcomm*); 2684014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSubcommDestroy(PetscSubcomm*); 2685014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSubcommSetNumber(PetscSubcomm,PetscInt); 2686014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSubcommSetType(PetscSubcomm,PetscSubcommType); 268765d9b8f1SHong Zhang PETSC_EXTERN PetscErrorCode PetscSubcommSetTypeGeneral(PetscSubcomm,PetscMPIInt,PetscMPIInt); 2688053d1c95SHong Zhang PETSC_EXTERN PetscErrorCode PetscSubcommView(PetscSubcomm,PetscViewer); 2689f68be91cSHong Zhang PETSC_EXTERN PetscErrorCode PetscSubcommSetFromOptions(PetscSubcomm); 2690d382aafbSBarry Smith 26910f453b92SJed Brown /*S 26920f453b92SJed Brown PetscSegBuffer - a segmented extendable buffer 26930f453b92SJed Brown 26940f453b92SJed Brown Level: developer 26950f453b92SJed Brown 26960f453b92SJed Brown .seealso: PetscSegBufferCreate(), PetscSegBufferGet(), PetscSegBufferExtract(), PetscSegBufferDestroy() 26970f453b92SJed Brown S*/ 26980f453b92SJed Brown typedef struct _n_PetscSegBuffer *PetscSegBuffer; 269913e3f751SJed Brown PETSC_EXTERN PetscErrorCode PetscSegBufferCreate(size_t,size_t,PetscSegBuffer*); 27000f453b92SJed Brown PETSC_EXTERN PetscErrorCode PetscSegBufferDestroy(PetscSegBuffer*); 270113e3f751SJed Brown PETSC_EXTERN PetscErrorCode PetscSegBufferGet(PetscSegBuffer,size_t,void*); 2702137cf7b6SJed Brown PETSC_EXTERN PetscErrorCode PetscSegBufferExtractAlloc(PetscSegBuffer,void*); 2703137cf7b6SJed Brown PETSC_EXTERN PetscErrorCode PetscSegBufferExtractTo(PetscSegBuffer,void*); 2704137cf7b6SJed Brown PETSC_EXTERN PetscErrorCode PetscSegBufferExtractInPlace(PetscSegBuffer,void*); 270513e3f751SJed Brown PETSC_EXTERN PetscErrorCode PetscSegBufferGetSize(PetscSegBuffer,size_t*); 270613e3f751SJed Brown PETSC_EXTERN PetscErrorCode PetscSegBufferUnuse(PetscSegBuffer,size_t); 27070f453b92SJed Brown 2708471ecdacSJed Brown /* Type-safe wrapper to encourage use of PETSC_RESTRICT. Does not use PetscFunctionBegin because the error handling 2709471ecdacSJed Brown * prevents the compiler from completely erasing the stub. This is called in inner loops so it has to be as fast as 2710471ecdacSJed Brown * possible. */ 271135005c2bSLisandro Dalcin PETSC_STATIC_INLINE PetscErrorCode PetscSegBufferGetInts(PetscSegBuffer seg,PetscInt count,PetscInt *PETSC_RESTRICT *slot) {return PetscSegBufferGet(seg,(size_t)count,(void**)slot);} 2712d382aafbSBarry Smith 2713268b0dfdSSatish Balay PETSC_EXTERN PetscSegBuffer PetscCitationsList; 27141f817a21SBarry Smith #undef __FUNCT__ 27151f817a21SBarry Smith #define __FUNCT__ "PetscCitationsRegister" 27161f817a21SBarry Smith /*@C 27171f817a21SBarry Smith PetscCitationsRegister - Register a bibtex item to obtain credit for an implemented algorithm used in the code. 27181f817a21SBarry Smith 27191f817a21SBarry Smith Not Collective - only what is registered on rank 0 of PETSC_COMM_WORLD will be printed 27201f817a21SBarry Smith 27211f817a21SBarry Smith Input Parameters: 27221f817a21SBarry Smith + cite - the bibtex item, formated to displayed on multiple lines nicely 27231f817a21SBarry Smith - set - a boolean variable initially set to PETSC_FALSE; this is used to insure only a single registration of the citation 27241f817a21SBarry Smith 2725850545d0SSatish Balay Level: intermediate 2726850545d0SSatish Balay 27271f817a21SBarry Smith Options Database: 27281f817a21SBarry Smith . -citations [filenmae] - print out the bibtex entries for the given computation 27291f817a21SBarry Smith @*/ 2730dff31646SBarry Smith PETSC_STATIC_INLINE PetscErrorCode PetscCitationsRegister(const char cit[],PetscBool *set) 2731dff31646SBarry Smith { 2732dff31646SBarry Smith size_t len; 2733dff31646SBarry Smith char *vstring; 2734dff31646SBarry Smith PetscErrorCode ierr; 2735dff31646SBarry Smith 27361f817a21SBarry Smith PetscFunctionBegin; 27378d3683fcSBarry Smith if (set && *set) PetscFunctionReturn(0); 2738dff31646SBarry Smith ierr = PetscStrlen(cit,&len);CHKERRQ(ierr); 273935005c2bSLisandro Dalcin ierr = PetscSegBufferGet(PetscCitationsList,len,&vstring);CHKERRQ(ierr); 2740dff31646SBarry Smith ierr = PetscMemcpy(vstring,cit,len);CHKERRQ(ierr); 2741dff31646SBarry Smith if (set) *set = PETSC_TRUE; 27421f817a21SBarry Smith PetscFunctionReturn(0); 2743dff31646SBarry Smith } 2744dff31646SBarry Smith 2745b967cddfSBarry Smith PETSC_EXTERN PetscErrorCode PetscURLShorten(const char[],char[],size_t); 2746fe278a28SBarry Smith PETSC_EXTERN PetscErrorCode PetscGoogleDriveAuthorize(MPI_Comm,char[],char[],size_t); 2747fe278a28SBarry Smith PETSC_EXTERN PetscErrorCode PetscGoogleDriveRefresh(MPI_Comm,const char[],char[],size_t); 2748f044a08eSBarry Smith PETSC_EXTERN PetscErrorCode PetscGoogleDriveUpload(MPI_Comm,const char[],const char []); 2749fe278a28SBarry Smith 2750f044a08eSBarry Smith PETSC_EXTERN PetscErrorCode PetscBoxAuthorize(MPI_Comm,char[],char[],size_t); 2751f044a08eSBarry Smith PETSC_EXTERN PetscErrorCode PetscBoxRefresh(MPI_Comm,const char[],char[],char[],size_t); 2752b967cddfSBarry Smith 275304102261SBarry Smith PETSC_EXTERN PetscErrorCode PetscTextBelt(MPI_Comm,const char[],const char[],PetscBool*); 2754dff31646SBarry Smith 275568e69593SBarry Smith PETSC_EXTERN PetscErrorCode PetscPullJSONValue(const char[],const char[],char[],size_t,PetscBool*); 27565dc0f0a4SBarry Smith PETSC_EXTERN PetscErrorCode PetscPushJSONValue(char[],const char[],const char[],size_t); 2757d382aafbSBarry Smith 2758b2566f29SBarry Smith 2759b2566f29SBarry Smith #if defined(PETSC_USE_DEBUG) 2760b2566f29SBarry Smith 2761b2566f29SBarry Smith /* 2762b2566f29SBarry Smith Verify that all processes in the communicator have called this from the same line of code 2763b2566f29SBarry Smith */ 2764*8f5db7efSBarry Smith PETSC_EXTERN PetscErrorCode PetscAllreduceBarrierCheck(MPI_Comm,PetscMPIInt,int,const char*,const char *); 2765b2566f29SBarry Smith #define MPIU_Allreduce(a,b,c,d,e,fcomm) (PetscAllreduceBarrierCheck(fcomm,c,__LINE__,__FUNCT__,__FILE__) || MPI_Allreduce(a,b,c,d,e,fcomm)) 2766b2566f29SBarry Smith #else 2767b2566f29SBarry Smith #define MPIU_Allreduce(a,b,c,d,e,fcomm) MPI_Allreduce(a,b,c,d,e,fcomm) 2768b2566f29SBarry Smith #endif 2769b2566f29SBarry Smith 2770d382aafbSBarry Smith /* Reset __FUNCT__ in case the user does not define it themselves */ 2771d382aafbSBarry Smith #undef __FUNCT__ 2772d382aafbSBarry Smith #define __FUNCT__ "User provided function" 2773d382aafbSBarry Smith 2774d382aafbSBarry Smith #endif 2775