1d382aafbSBarry Smith /* 2d382aafbSBarry Smith This is the main PETSc include file (for C and C++). It is included by all 3d382aafbSBarry Smith other PETSc include files, so it almost never has to be specifically included. 4d382aafbSBarry Smith */ 56c7e564aSBarry Smith #if !defined(__PETSCSYS_H) 66c7e564aSBarry Smith #define __PETSCSYS_H 7d382aafbSBarry Smith /* ========================================================================== */ 8d382aafbSBarry Smith /* 9d382aafbSBarry Smith petscconf.h is contained in ${PETSC_ARCH}/include/petscconf.h it is 101cc8b206SBarry Smith found automatically by the compiler due to the -I${PETSC_DIR}/${PETSC_ARCH}/include. 111cc8b206SBarry Smith For --prefix installs the ${PETSC_ARCH}/ does not exist and petscconf.h is in the same 121cc8b206SBarry Smith directory as the other PETSc include files. 13d382aafbSBarry Smith */ 142c8e378dSBarry Smith #include <petscconf.h> 152c8e378dSBarry Smith #include <petscfix.h> 16d382aafbSBarry Smith 1773fca5a0SBarry Smith #if defined(PETSC_DESIRE_FEATURE_TEST_MACROS) 1873fca5a0SBarry Smith /* 1973fca5a0SBarry Smith Feature test macros must be included before headers defined by IEEE Std 1003.1-2001 2073fca5a0SBarry Smith We only turn these in PETSc source files that require them by setting PETSC_DESIRE_FEATURE_TEST_MACROS 2173fca5a0SBarry Smith */ 22216f1ae6SBarry Smith #if defined(PETSC__POSIX_C_SOURCE_200112L) && !defined(_POSIX_C_SOURCE) 2373fca5a0SBarry Smith #define _POSIX_C_SOURCE 200112L 2473fca5a0SBarry Smith #endif 25216f1ae6SBarry Smith #if defined(PETSC__BSD_SOURCE) && !defined(_BSD_SOURCE) 2673fca5a0SBarry Smith #define _BSD_SOURCE 2773fca5a0SBarry Smith #endif 2807f00807SSatish Balay #if defined(PETSC__DEFAULT_SOURCE) && !defined(_DEFAULT_SOURCE) 2907f00807SSatish Balay #define _DEFAULT_SOURCE 3007f00807SSatish Balay #endif 31ea0fecefSShri Abhyankar #if defined(PETSC__GNU_SOURCE) && !defined(_GNU_SOURCE) 32ea0fecefSShri Abhyankar #define _GNU_SOURCE 33ea0fecefSShri Abhyankar #endif 3473fca5a0SBarry Smith #endif 3573fca5a0SBarry Smith 36d382aafbSBarry Smith /* ========================================================================== */ 37d382aafbSBarry Smith /* 382c280183SJed Brown This facilitates using the C version of PETSc from C++ and the C++ version from C. 39d382aafbSBarry Smith */ 401ec50b02SJed Brown #if defined(__cplusplus) 411ec50b02SJed Brown # define PETSC_FUNCTION_NAME PETSC_FUNCTION_NAME_CXX 421ec50b02SJed Brown #else 431ec50b02SJed Brown # define PETSC_FUNCTION_NAME PETSC_FUNCTION_NAME_C 441ec50b02SJed Brown #endif 45d382aafbSBarry Smith 46c5e4d11fSDmitry Karpeev /* ========================================================================== */ 47c5e4d11fSDmitry Karpeev /* 48c5e4d11fSDmitry Karpeev Since PETSc manages its own extern "C" handling users should never include PETSc include 491cc8b206SBarry Smith files within extern "C". This will generate a compiler error if a user does put the include 501cc8b206SBarry Smith file within an extern "C". 51c5e4d11fSDmitry Karpeev */ 52c5e4d11fSDmitry Karpeev #if defined(__cplusplus) 53c5e4d11fSDmitry Karpeev void assert_never_put_petsc_headers_inside_an_extern_c(int); void assert_never_put_petsc_headers_inside_an_extern_c(double); 54c5e4d11fSDmitry Karpeev #endif 55c5e4d11fSDmitry Karpeev 56ed938b00SJed Brown #if defined(__cplusplus) 57ed938b00SJed Brown # define PETSC_RESTRICT PETSC_CXX_RESTRICT 58ed938b00SJed Brown #else 59ed938b00SJed Brown # define PETSC_RESTRICT PETSC_C_RESTRICT 60ed938b00SJed Brown #endif 61ed938b00SJed Brown 62ed938b00SJed Brown #if defined(__cplusplus) 63ed938b00SJed Brown # define PETSC_STATIC_INLINE PETSC_CXX_STATIC_INLINE 64ed938b00SJed Brown #else 65ed938b00SJed Brown # define PETSC_STATIC_INLINE PETSC_C_STATIC_INLINE 66ed938b00SJed Brown #endif 67ed938b00SJed Brown 68ab699e31SSatish Balay #if defined(_WIN32) && defined(PETSC_USE_SHARED_LIBRARIES) /* For Win32 shared libraries */ 69014dd563SJed Brown # define PETSC_DLLEXPORT __declspec(dllexport) 70014dd563SJed Brown # define PETSC_DLLIMPORT __declspec(dllimport) 7121f66b81SJed Brown # define PETSC_VISIBILITY_INTERNAL 7226703958SBarry Smith #elif defined(PETSC_USE_VISIBILITY_CXX) && defined(__cplusplus) 7326703958SBarry Smith # define PETSC_DLLEXPORT __attribute__((visibility ("default"))) 7426703958SBarry Smith # define PETSC_DLLIMPORT __attribute__((visibility ("default"))) 7526703958SBarry Smith # define PETSC_VISIBILITY_INTERNAL __attribute__((visibility ("hidden"))) 7626703958SBarry Smith #elif defined(PETSC_USE_VISIBILITY_C) && !defined(__cplusplus) 77014dd563SJed Brown # define PETSC_DLLEXPORT __attribute__((visibility ("default"))) 78014dd563SJed Brown # define PETSC_DLLIMPORT __attribute__((visibility ("default"))) 7921f66b81SJed Brown # define PETSC_VISIBILITY_INTERNAL __attribute__((visibility ("hidden"))) 80d382aafbSBarry Smith #else 81014dd563SJed Brown # define PETSC_DLLEXPORT 82014dd563SJed Brown # define PETSC_DLLIMPORT 8321f66b81SJed Brown # define PETSC_VISIBILITY_INTERNAL 84014dd563SJed Brown #endif 85014dd563SJed Brown 86014dd563SJed Brown #if defined(petsc_EXPORTS) /* CMake defines this when building the shared library */ 87014dd563SJed Brown # define PETSC_VISIBILITY_PUBLIC PETSC_DLLEXPORT 88014dd563SJed Brown #else /* Win32 users need this to import symbols from petsc.dll */ 89014dd563SJed Brown # define PETSC_VISIBILITY_PUBLIC PETSC_DLLIMPORT 90014dd563SJed Brown #endif 91014dd563SJed Brown 921cc8b206SBarry Smith /* 931cc8b206SBarry Smith Functions tagged with PETSC_EXTERN in the header files are 941cc8b206SBarry Smith always defined as extern "C" when compiled with C++ so they may be 951cc8b206SBarry Smith used from C and are always visible in the shared libraries 961cc8b206SBarry Smith */ 972c280183SJed Brown #if defined(__cplusplus) 98014dd563SJed Brown #define PETSC_EXTERN extern "C" PETSC_VISIBILITY_PUBLIC 99638cfed1SJed Brown #define PETSC_EXTERN_TYPEDEF extern "C" 10021f66b81SJed Brown #define PETSC_INTERN extern "C" PETSC_VISIBILITY_INTERNAL 101014dd563SJed Brown #else 102014dd563SJed Brown #define PETSC_EXTERN extern PETSC_VISIBILITY_PUBLIC 103638cfed1SJed Brown #define PETSC_EXTERN_TYPEDEF 1046258c452SJed Brown #define PETSC_INTERN extern PETSC_VISIBILITY_INTERNAL 105d382aafbSBarry Smith #endif 10627710113SBarry Smith 1072c8e378dSBarry Smith #include <petscversion.h> 108301d30feSBarry Smith #define PETSC_AUTHOR_INFO " The PETSc Team\n petsc-maint@mcs.anl.gov\n http://www.mcs.anl.gov/petsc/\n" 109d382aafbSBarry Smith 110d382aafbSBarry Smith /* ========================================================================== */ 111d382aafbSBarry Smith 112d382aafbSBarry Smith /* 113d382aafbSBarry Smith Defines the interface to MPI allowing the use of all MPI functions. 114d382aafbSBarry Smith 115d382aafbSBarry Smith PETSc does not use the C++ binding of MPI at ALL. The following flag 116d382aafbSBarry Smith makes sure the C++ bindings are not included. The C++ bindings REQUIRE 117d382aafbSBarry Smith putting mpi.h before ANY C++ include files, we cannot control this 118d382aafbSBarry Smith with all PETSc users. Users who want to use the MPI C++ bindings can include 119d382aafbSBarry Smith mpicxx.h directly in their code 120d382aafbSBarry Smith */ 121fa9e63e2SJed Brown #if !defined(MPICH_SKIP_MPICXX) 122d382aafbSBarry Smith # define MPICH_SKIP_MPICXX 1 123fa9e63e2SJed Brown #endif 124fa9e63e2SJed Brown #if !defined(OMPI_SKIP_MPICXX) 125d382aafbSBarry Smith # define OMPI_SKIP_MPICXX 1 126fa9e63e2SJed Brown #endif 127076e11b5SSatish Balay #if !defined(OMPI_WANT_MPI_INTERFACE_WARNING) 128076e11b5SSatish Balay # define OMPI_WANT_MPI_INTERFACE_WARNING 0 129076e11b5SSatish Balay #endif 1302c8e378dSBarry Smith #include <mpi.h> 13165013866SBarry Smith 132d382aafbSBarry Smith /* 133a7886beaSBarry Smith Perform various sanity checks that the correct mpi.h is being included at compile time. 134a7886beaSBarry Smith This usually happens because 135a7886beaSBarry Smith * either an unexpected mpi.h is in the default compiler path (i.e. in /usr/include) or 136a7886beaSBarry Smith * an extra include path -I/something (which contains the unexpected mpi.h) is being passed to the compiler 137a7886beaSBarry Smith */ 138a7886beaSBarry Smith #if defined(PETSC_HAVE_MPIUNI) 139a7886beaSBarry Smith # if !defined(__MPIUNI_H) 140a7886beaSBarry Smith # error "PETSc was configured with --with-mpi=0 but now appears to be compiling using a different mpi.h" 141a7886beaSBarry Smith # endif 14241f4af4cSSatish Balay #elif defined(PETSC_HAVE_I_MPI_NUMVERSION) 14341f4af4cSSatish Balay # if !defined(I_MPI_NUMVERSION) 14441f4af4cSSatish Balay # error "PETSc was configured with I_MPI but now appears to be compiling using a non-I_MPI mpi.h" 14541f4af4cSSatish Balay # elif I_MPI_NUMVERSION != PETSC_HAVE_I_MPI_NUMVERSION 14641f4af4cSSatish Balay # error "PETSc was configured with one I_MPI mpi.h version but now appears to be compiling using a different I_MPI mpi.h version" 14741f4af4cSSatish Balay # endif 14841f4af4cSSatish Balay #elif defined(PETSC_HAVE_MVAPICH2_NUMVERSION) 14941f4af4cSSatish Balay # if !defined(MVAPICH2_NUMVERSION) 15041f4af4cSSatish Balay # error "PETSc was configured with MVAPICH2 but now appears to be compiling using a non-MVAPICH2 mpi.h" 15141f4af4cSSatish Balay # elif MVAPICH2_NUMVERSION != PETSC_HAVE_MVAPICH2_NUMVERSION 15241f4af4cSSatish Balay # error "PETSc was configured with one MVAPICH2 mpi.h version but now appears to be compiling using a different MVAPICH2 mpi.h version" 15341f4af4cSSatish Balay # endif 154a7886beaSBarry Smith #elif defined(PETSC_HAVE_MPICH_NUMVERSION) 15541f4af4cSSatish Balay # if !defined(MPICH_NUMVERSION) || defined(MVAPICH2_NUMVERSION) || defined(I_MPI_NUMVERSION) 156a7886beaSBarry Smith # error "PETSc was configured with MPICH but now appears to be compiling using a non-MPICH mpi.h" 157ca70f86eSJed Brown # elif (MPICH_NUMVERSION/100000 != PETSC_HAVE_MPICH_NUMVERSION/100000) || (MPICH_NUMVERSION%100000/1000 < PETSC_HAVE_MPICH_NUMVERSION%100000/1000) 158a7886beaSBarry Smith # error "PETSc was configured with one MPICH mpi.h version but now appears to be compiling using a different MPICH mpi.h version" 159a7886beaSBarry Smith # endif 160a7886beaSBarry Smith #elif defined(PETSC_HAVE_OMPI_MAJOR_VERSION) 161a7886beaSBarry Smith # if !defined(OMPI_MAJOR_VERSION) 162a7886beaSBarry Smith # error "PETSc was configured with OpenMPI but now appears to be compiling using a non-OpenMPI mpi.h" 163ca70f86eSJed Brown # elif (OMPI_MAJOR_VERSION != PETSC_HAVE_OMPI_MAJOR_VERSION) || (OMPI_MINOR_VERSION != PETSC_HAVE_OMPI_MINOR_VERSION) || (OMPI_RELEASE_VERSION < PETSC_HAVE_OMPI_RELEASE_VERSION) 164c3ac57cfSSatish Balay # error "PETSc was configured with one OpenMPI mpi.h version but now appears to be compiling using a different OpenMPI mpi.h version" 165a7886beaSBarry Smith # endif 16641f4af4cSSatish Balay #elif defined(OMPI_MAJOR_VERSION) || defined(MPICH_NUMVERSION) 16741f4af4cSSatish Balay # error "PETSc was configured with undetermined MPI - but now appears to be compiling using either of OpenMPI or a MPICH variant" 168a7886beaSBarry Smith #endif 169a7886beaSBarry Smith 170a7886beaSBarry Smith /* 1712981ebdbSBarry Smith Need to put stdio.h AFTER mpi.h for MPICH2 with C++ compiler 172d382aafbSBarry Smith see the top of mpicxx.h in the MPICH2 distribution. 173d382aafbSBarry Smith */ 174d382aafbSBarry Smith #include <stdio.h> 175d382aafbSBarry Smith 176d382aafbSBarry Smith /* MSMPI on 32bit windows requires this yukky hack - that breaks MPI standard compliance */ 177d382aafbSBarry Smith #if !defined(MPIAPI) 178d382aafbSBarry Smith #define MPIAPI 179d382aafbSBarry Smith #endif 180d382aafbSBarry Smith 1811cc8b206SBarry Smith /* 1821cc8b206SBarry Smith Support for Clang (>=3.2) matching type tag arguments with void* buffer types. 1831cc8b206SBarry Smith This allows the compiler to detect cases where the MPI datatype argument passed to a MPI routine 1841cc8b206SBarry Smith does not match the actual type of the argument being passed in 1851cc8b206SBarry Smith */ 186c5e4d11fSDmitry Karpeev #if defined(__has_attribute) && defined(works_with_const_which_is_not_true) 187894dd566SJed Brown # if __has_attribute(argument_with_type_tag) && __has_attribute(pointer_with_type_tag) && __has_attribute(type_tag_for_datatype) 188894dd566SJed Brown # define PetscAttrMPIPointerWithType(bufno,typeno) __attribute__((pointer_with_type_tag(MPI,bufno,typeno))) 1898ad47952SJed Brown # define PetscAttrMPITypeTag(type) __attribute__((type_tag_for_datatype(MPI,type))) 1908ad47952SJed Brown # define PetscAttrMPITypeTagLayoutCompatible(type) __attribute__((type_tag_for_datatype(MPI,type,layout_compatible))) 191894dd566SJed Brown # endif 192894dd566SJed Brown #endif 193894dd566SJed Brown #if !defined(PetscAttrMPIPointerWithType) 194894dd566SJed Brown # define PetscAttrMPIPointerWithType(bufno,typeno) 1958ad47952SJed Brown # define PetscAttrMPITypeTag(type) 1968ad47952SJed Brown # define PetscAttrMPITypeTagLayoutCompatible(type) 197894dd566SJed Brown #endif 198b3506946SBarry Smith 199d382aafbSBarry Smith /*MC 2001957e957SBarry Smith PetscErrorCode - datatype used for return error code from almost all PETSc functions 201d382aafbSBarry Smith 202d382aafbSBarry Smith Level: beginner 203d382aafbSBarry Smith 204d382aafbSBarry Smith .seealso: CHKERRQ, SETERRQ 205d382aafbSBarry Smith M*/ 206d382aafbSBarry Smith typedef int PetscErrorCode; 207d382aafbSBarry Smith 208d382aafbSBarry Smith /*MC 209d382aafbSBarry Smith 210503cfb0cSBarry Smith PetscClassId - A unique id used to identify each PETSc class. 211d382aafbSBarry Smith 212e28ce29aSPatrick Sanan Notes: 213e28ce29aSPatrick Sanan Use PetscClassIdRegister() to obtain a new value for a new class being created. Usually 2141957e957SBarry Smith XXXInitializePackage() calls it for each class it defines. 2151957e957SBarry Smith 216e28ce29aSPatrick Sanan Developer Notes: 217e28ce29aSPatrick Sanan Internal integer stored in the _p_PetscObject data structure. 2181957e957SBarry Smith These are all computed by an offset from the lowest one, PETSC_SMALLEST_CLASSID. 2191957e957SBarry Smith 2201957e957SBarry Smith Level: developer 221d382aafbSBarry Smith 2220700a824SBarry Smith .seealso: PetscClassIdRegister(), PetscLogEventRegister(), PetscHeaderCreate() 223d382aafbSBarry Smith M*/ 2240700a824SBarry Smith typedef int PetscClassId; 225d382aafbSBarry Smith 226d382aafbSBarry Smith 227d382aafbSBarry Smith /*MC 228d382aafbSBarry Smith PetscMPIInt - datatype used to represent 'int' parameters to MPI functions. 229d382aafbSBarry Smith 230d382aafbSBarry Smith Level: intermediate 231d382aafbSBarry Smith 232e28ce29aSPatrick Sanan Notes: 233e28ce29aSPatrick Sanan usually this is the same as PetscInt, but if PETSc was built with --with-64-bit-indices but 234e28ce29aSPatrick Sanan standard C/Fortran integers are 32 bit then this is NOT the same as PetscInt; it remains 32 bit. 235d382aafbSBarry Smith 2364dc2109aSBarry Smith PetscMPIIntCast(a,&b) checks if the given PetscInt a will fit in a PetscMPIInt, if not it 2372981ebdbSBarry Smith generates a PETSC_ERR_ARG_OUTOFRANGE error. 238d382aafbSBarry Smith 2391cc8b206SBarry Smith .seealso: PetscBLASInt, PetscInt, PetscMPIIntCast() 240d382aafbSBarry Smith 241d382aafbSBarry Smith M*/ 242d382aafbSBarry Smith typedef int PetscMPIInt; 243d382aafbSBarry Smith 244d382aafbSBarry Smith /*MC 245d382aafbSBarry Smith PetscEnum - datatype used to pass enum types within PETSc functions. 246d382aafbSBarry Smith 247d382aafbSBarry Smith Level: intermediate 248d382aafbSBarry Smith 249d382aafbSBarry Smith .seealso: PetscOptionsGetEnum(), PetscOptionsEnum(), PetscBagRegisterEnum() 250d382aafbSBarry Smith M*/ 251d382aafbSBarry Smith typedef enum { ENUM_DUMMY } PetscEnum; 2525a576424SJed Brown PETSC_EXTERN MPI_Datatype MPIU_ENUM PetscAttrMPITypeTag(PetscEnum); 253d382aafbSBarry Smith 254fab38c73SJed Brown #if defined(PETSC_HAVE_STDINT_H) 255fab38c73SJed Brown #include <stdint.h> 256fab38c73SJed Brown #endif 257a05e1a72SSatish Balay #if defined (PETSC_HAVE_INTTYPES_H) 25813e758fdSSatish Balay #define __STDC_FORMAT_MACROS /* required for using PRId64 from c++ */ 259a05e1a72SSatish Balay #include <inttypes.h> 26037354ed4SSatish Balay # if !defined(PRId64) 26137354ed4SSatish Balay # define PRId64 "ld" 26237354ed4SSatish Balay # endif 263a05e1a72SSatish Balay #endif 264fab38c73SJed Brown 26599a4b90dSDave May typedef short PetscShort; 26699a4b90dSDave May typedef char PetscChar; 26799a4b90dSDave May typedef float PetscFloat; 26899a4b90dSDave May 269d382aafbSBarry Smith /*MC 270*bb42e86aSJed Brown PetscInt - PETSc type that represents an integer, used primarily to 271e28ce29aSPatrick Sanan represent size of arrays and indexing into arrays. Its size can be configured with the option --with-64-bit-indices to be either 32-bit (default) or 64-bit. 272d382aafbSBarry Smith 273e28ce29aSPatrick Sanan Notes: 274e28ce29aSPatrick Sanan For MPI calls that require datatypes, use MPIU_INT as the datatype for PetscInt. It will automatically work correctly regardless of the size of PetscInt. 275390e1bf2SBarry Smith 276e28ce29aSPatrick Sanan Level: beginner 277390e1bf2SBarry Smith 278e28ce29aSPatrick Sanan .seealso: PetscBLASInt, PetscMPIInt, PetscReal, PetscScalar, PetscComplex, PetscInt, MPIU_REAL, MPIU_SCALAR, MPIU_COMPLEX, MPIU_INT 279d382aafbSBarry Smith M*/ 280e28ce29aSPatrick Sanan 281e28ce29aSPatrick Sanan /*MC 282e28ce29aSPatrick Sanan MPIU_INT - MPI datatype corresponding to PetscInt 283e28ce29aSPatrick Sanan 284e28ce29aSPatrick Sanan Notes: 285e28ce29aSPatrick Sanan In MPI calls that require an MPI datatype that matches a PetscInt or array of PetscInt values, pass this value. 286e28ce29aSPatrick Sanan 287e28ce29aSPatrick Sanan Level: beginner 288e28ce29aSPatrick Sanan 289e28ce29aSPatrick Sanan .seealso: PetscReal, PetscScalar, PetscComplex, PetscInt, MPIU_REAL, MPIU_SCALAR, MPIU_COMPLEX 290e28ce29aSPatrick Sanan M*/ 291e28ce29aSPatrick Sanan 29237354ed4SSatish Balay #if defined(PETSC_HAVE_STDINT_H) && defined(PETSC_HAVE_INTTYPES_H) && defined(PETSC_HAVE_MPI_INT64_T) /* MPI_INT64_T is not guaranteed to be a macro */ 293bafee8b4SSatish Balay typedef int64_t PetscInt64; 294bd84f1cfSSatish Balay # define MPIU_INT64 MPI_INT64_T 295a05e1a72SSatish Balay # define PetscInt64_FMT PRId64 296fab38c73SJed Brown #elif (PETSC_SIZEOF_LONG_LONG == 8) 297bafee8b4SSatish Balay typedef long long PetscInt64; 298bd84f1cfSSatish Balay # define MPIU_INT64 MPI_LONG_LONG_INT 299a05e1a72SSatish Balay # define PetscInt64_FMT "lld" 300f505b413SSatish Balay #elif defined(PETSC_HAVE___INT64) 301bafee8b4SSatish Balay typedef __int64 PetscInt64; 302bd84f1cfSSatish Balay # define MPIU_INT64 MPI_INT64_T 303a05e1a72SSatish Balay # define PetscInt64_FMT "ld" 304236ed0a3SSatish Balay #else 305bafee8b4SSatish Balay #error "cannot determine PetscInt64 type" 306236ed0a3SSatish Balay #endif 307d382aafbSBarry Smith #if defined(PETSC_USE_64BIT_INDICES) 308bafee8b4SSatish Balay typedef PetscInt64 PetscInt; 309bd84f1cfSSatish Balay #define MPIU_INT MPIU_INT64 310a05e1a72SSatish Balay #define PetscInt_FMT PetscInt64_FMT 311d382aafbSBarry Smith #else 312d382aafbSBarry Smith typedef int PetscInt; 313d382aafbSBarry Smith #define MPIU_INT MPI_INT 314a05e1a72SSatish Balay #define PetscInt_FMT "d" 315d382aafbSBarry Smith #endif 316d382aafbSBarry Smith 317702bc34aSSatish Balay /*MC 318702bc34aSSatish Balay PetscBLASInt - datatype used to represent 'int' parameters to BLAS/LAPACK functions. 319702bc34aSSatish Balay 320e28ce29aSPatrick Sanan Notes: 321e28ce29aSPatrick Sanan Usually this is the same as PetscInt, but if PETSc was built with --with-64-bit-indices but 322702bc34aSSatish Balay standard C/Fortran integers are 32 bit then this is NOT the same as PetscInt it remains 32 bit 323702bc34aSSatish Balay (except on very rare BLAS/LAPACK implementations that support 64 bit integers see the note below). 324702bc34aSSatish Balay 325c5df96a5SBarry Smith PetscErrorCode PetscBLASIntCast(a,&b) checks if the given PetscInt a will fit in a PetscBLASInt, if not it 3262981ebdbSBarry Smith generates a PETSC_ERR_ARG_OUTOFRANGE error 327702bc34aSSatish Balay 328e28ce29aSPatrick Sanan Installation Notes: 329e28ce29aSPatrick Sanan The 64bit versions of MATLAB ship with BLAS and LAPACK that use 64 bit integers for sizes etc, 330702bc34aSSatish Balay if you run ./configure with the option 331149a18a2SBarry Smith --with-blaslapack-lib=[/Applications/MATLAB_R2010b.app/bin/maci64/libmwblas.dylib,/Applications/MATLAB_R2010b.app/bin/maci64/libmwlapack.dylib] 3322981ebdbSBarry Smith but you need to also use --known-64-bit-blas-indices. 3332981ebdbSBarry Smith 334390e1bf2SBarry Smith MKL also ships with 64 bit integer versions of the BLAS and LAPACK, if you select those you must also ./configure with 335390e1bf2SBarry Smith --known-64-bit-blas-indices 336390e1bf2SBarry Smith 337390e1bf2SBarry Smith OpenBLAS can also be built to use 64 bit integers. The ./configure options --download-openblas -download-openblas-64-bit-blas-indices 338390e1bf2SBarry Smith will build a 64 bit integer version 3392981ebdbSBarry Smith 340e28ce29aSPatrick Sanan Developer Notes: 341e28ce29aSPatrick Sanan Eventually ./configure should automatically determine the size of the integers used by BLAS/LAPACK. 342702bc34aSSatish Balay 343702bc34aSSatish Balay External packages such as hypre, ML, SuperLU etc do not provide any support for passing 64 bit integers to BLAS/LAPACK so cannot 344702bc34aSSatish Balay be used with PETSc if you have set PetscBLASInt to long int. 345702bc34aSSatish Balay 346e28ce29aSPatrick Sanan Level: intermediate 347e28ce29aSPatrick Sanan 3481cc8b206SBarry Smith .seealso: PetscMPIInt, PetscInt, PetscBLASIntCast() 349702bc34aSSatish Balay 350702bc34aSSatish Balay M*/ 351702bc34aSSatish Balay #if defined(PETSC_HAVE_64BIT_BLAS_INDICES) 352bafee8b4SSatish Balay typedef PetscInt64 PetscBLASInt; 353702bc34aSSatish Balay #else 354702bc34aSSatish Balay typedef int PetscBLASInt; 355702bc34aSSatish Balay #endif 356702bc34aSSatish Balay 357503cfb0cSBarry Smith /* 358503cfb0cSBarry Smith For the rare cases when one needs to send a size_t object with MPI 359503cfb0cSBarry Smith */ 360d382aafbSBarry Smith #if (PETSC_SIZEOF_SIZE_T) == (PETSC_SIZEOF_INT) 361adcec1e5SJed Brown #define MPIU_SIZE_T MPI_UNSIGNED 362d382aafbSBarry Smith #elif (PETSC_SIZEOF_SIZE_T) == (PETSC_SIZEOF_LONG) 363adcec1e5SJed Brown #define MPIU_SIZE_T MPI_UNSIGNED_LONG 364d382aafbSBarry Smith #elif (PETSC_SIZEOF_SIZE_T) == (PETSC_SIZEOF_LONG_LONG) 365adcec1e5SJed Brown #define MPIU_SIZE_T MPI_UNSIGNED_LONG_LONG 366d382aafbSBarry Smith #else 367d382aafbSBarry Smith #error "Unknown size for size_t! Send us a bugreport at petsc-maint@mcs.anl.gov" 368d382aafbSBarry Smith #endif 369d382aafbSBarry Smith 370d382aafbSBarry Smith /* 371d382aafbSBarry Smith You can use PETSC_STDOUT as a replacement of stdout. You can also change 372d382aafbSBarry Smith the value of PETSC_STDOUT to redirect all standard output elsewhere 373d382aafbSBarry Smith */ 374014dd563SJed Brown PETSC_EXTERN FILE* PETSC_STDOUT; 375d382aafbSBarry Smith 376d382aafbSBarry Smith /* 377d382aafbSBarry Smith You can use PETSC_STDERR as a replacement of stderr. You can also change 378d382aafbSBarry Smith the value of PETSC_STDERR to redirect all standard error elsewhere 379d382aafbSBarry Smith */ 380014dd563SJed Brown PETSC_EXTERN FILE* PETSC_STDERR; 381d382aafbSBarry Smith 382d382aafbSBarry Smith /*MC 383d382aafbSBarry Smith PetscUnlikely - hints the compiler that the given condition is usually FALSE 384d382aafbSBarry Smith 385d382aafbSBarry Smith Synopsis: 386aaa7dc30SBarry Smith #include <petscsys.h> 387ace3abfcSBarry Smith PetscBool PetscUnlikely(PetscBool cond) 388d382aafbSBarry Smith 389eca87e8dSBarry Smith Not Collective 390eca87e8dSBarry Smith 391d382aafbSBarry Smith Input Parameters: 392d382aafbSBarry Smith . cond - condition or expression 393d382aafbSBarry Smith 394e28ce29aSPatrick Sanan Notes: 395e28ce29aSPatrick Sanan This returns the same truth value, it is only a hint to compilers that the resulting 396d382aafbSBarry Smith branch is unlikely. 397d382aafbSBarry Smith 398d382aafbSBarry Smith Level: advanced 399d382aafbSBarry Smith 400d382aafbSBarry Smith .seealso: PetscLikely(), CHKERRQ 401d382aafbSBarry Smith M*/ 402d382aafbSBarry Smith 403d382aafbSBarry Smith /*MC 404d382aafbSBarry Smith PetscLikely - hints the compiler that the given condition is usually TRUE 405d382aafbSBarry Smith 406d382aafbSBarry Smith Synopsis: 407aaa7dc30SBarry Smith #include <petscsys.h> 40823072422SBarry Smith PetscBool PetscLikely(PetscBool cond) 409d382aafbSBarry Smith 410eca87e8dSBarry Smith Not Collective 411eca87e8dSBarry Smith 412d382aafbSBarry Smith Input Parameters: 413d382aafbSBarry Smith . cond - condition or expression 414d382aafbSBarry Smith 415e28ce29aSPatrick Sanan Notes: 416e28ce29aSPatrick Sanan This returns the same truth value, it is only a hint to compilers that the resulting 417d382aafbSBarry Smith branch is likely. 418d382aafbSBarry Smith 419d382aafbSBarry Smith Level: advanced 420d382aafbSBarry Smith 421d382aafbSBarry Smith .seealso: PetscUnlikely() 422d382aafbSBarry Smith M*/ 423d382aafbSBarry Smith #if defined(PETSC_HAVE_BUILTIN_EXPECT) 424d382aafbSBarry Smith # define PetscUnlikely(cond) __builtin_expect(!!(cond),0) 425d382aafbSBarry Smith # define PetscLikely(cond) __builtin_expect(!!(cond),1) 426d382aafbSBarry Smith #else 427cd3f4ce9SJed Brown # define PetscUnlikely(cond) (cond) 428cd3f4ce9SJed Brown # define PetscLikely(cond) (cond) 429d382aafbSBarry Smith #endif 430d382aafbSBarry Smith 431d382aafbSBarry Smith /* 432d382aafbSBarry Smith Declare extern C stuff after including external header files 433d382aafbSBarry Smith */ 434d382aafbSBarry Smith 435d382aafbSBarry Smith 436d382aafbSBarry Smith /* 437d382aafbSBarry Smith Basic PETSc constants 438d382aafbSBarry Smith */ 439d382aafbSBarry Smith 440d382aafbSBarry Smith /*E 441ace3abfcSBarry Smith PetscBool - Logical variable. Actually an int in C and a logical in Fortran. 442d382aafbSBarry Smith 443d382aafbSBarry Smith Level: beginner 444d382aafbSBarry Smith 445e28ce29aSPatrick Sanan Developer Note: 446e28ce29aSPatrick Sanan Why have PetscBool , why not use bool in C? The problem is that K and R C, C99 and C++ all have different mechanisms for 44734e82e7dSBarry Smith boolean values. It is not easy to have a simple macro that that will work properly in all circumstances with all three mechanisms. 44834e82e7dSBarry Smith 4491cc8b206SBarry Smith .seealso: PETSC_TRUE, PETSC_FALSE, PetscNot() 450d382aafbSBarry Smith E*/ 451ace3abfcSBarry Smith typedef enum { PETSC_FALSE,PETSC_TRUE } PetscBool; 4526a6fc655SJed Brown PETSC_EXTERN const char *const PetscBools[]; 4535a576424SJed Brown PETSC_EXTERN MPI_Datatype MPIU_BOOL PetscAttrMPITypeTag(PetscBool); 45470b3c8c7SBarry Smith 4558b49ba18SBarry Smith /* 456390e1bf2SBarry Smith Defines elementary mathematics functions and constants. 4578b49ba18SBarry Smith */ 4588b49ba18SBarry Smith #include <petscmath.h> 4598b49ba18SBarry Smith 46070b3c8c7SBarry Smith /*E 46170b3c8c7SBarry Smith PetscCopyMode - Determines how an array passed to certain functions is copied or retained 46270b3c8c7SBarry Smith 46370b3c8c7SBarry Smith Level: beginner 46470b3c8c7SBarry Smith 46570b3c8c7SBarry Smith $ PETSC_COPY_VALUES - the array values are copied into new space, the user is free to reuse or delete the passed in array 46670b3c8c7SBarry Smith $ PETSC_OWN_POINTER - the array values are NOT copied, the object takes ownership of the array and will free it later, the user cannot change or 46770b3c8c7SBarry Smith $ delete the array. The array MUST have been obtained with PetscMalloc(). Hence this mode cannot be used in Fortran. 46870b3c8c7SBarry Smith $ PETSC_USE_POINTER - the array values are NOT copied, the object uses the array but does NOT take ownership of the array. The user cannot use 46970b3c8c7SBarry Smith the array but the user must delete the array after the object is destroyed. 47070b3c8c7SBarry Smith 47170b3c8c7SBarry Smith E*/ 47270b3c8c7SBarry Smith typedef enum { PETSC_COPY_VALUES, PETSC_OWN_POINTER, PETSC_USE_POINTER} PetscCopyMode; 4736a6fc655SJed Brown PETSC_EXTERN const char *const PetscCopyModes[]; 474d382aafbSBarry Smith 475d382aafbSBarry Smith /*MC 476ace3abfcSBarry Smith PETSC_FALSE - False value of PetscBool 477d382aafbSBarry Smith 478d382aafbSBarry Smith Level: beginner 479d382aafbSBarry Smith 480e28ce29aSPatrick Sanan Note: 481e28ce29aSPatrick Sanan Zero integer 482d382aafbSBarry Smith 483ace3abfcSBarry Smith .seealso: PetscBool, PETSC_TRUE 484d382aafbSBarry Smith M*/ 485d382aafbSBarry Smith 486d382aafbSBarry Smith /*MC 487ace3abfcSBarry Smith PETSC_TRUE - True value of PetscBool 488d382aafbSBarry Smith 489d382aafbSBarry Smith Level: beginner 490d382aafbSBarry Smith 491e28ce29aSPatrick Sanan Note: 492e28ce29aSPatrick Sanan Nonzero integer 493d382aafbSBarry Smith 494ace3abfcSBarry Smith .seealso: PetscBool, PETSC_FALSE 495d382aafbSBarry Smith M*/ 496d382aafbSBarry Smith 497d382aafbSBarry Smith /*MC 4980298fd71SBarry Smith PETSC_IGNORE - same as NULL, means PETSc will ignore this argument 499d382aafbSBarry Smith 500d382aafbSBarry Smith Level: beginner 501d382aafbSBarry Smith 502e28ce29aSPatrick Sanan Note: 503e28ce29aSPatrick Sanan Accepted by many PETSc functions to not set a parameter and instead use 504d382aafbSBarry Smith some default 505d382aafbSBarry Smith 506e28ce29aSPatrick Sanan Fortran Notes: 507e28ce29aSPatrick Sanan This macro does not exist in Fortran; you must use PETSC_NULL_INTEGER, 508d382aafbSBarry Smith PETSC_NULL_DOUBLE_PRECISION etc 509d382aafbSBarry Smith 510e28ce29aSPatrick Sanan .seealso: PETSC_DECIDE, PETSC_DEFAULT, PETSC_DETERMINE 511d382aafbSBarry Smith 512d382aafbSBarry Smith M*/ 5130298fd71SBarry Smith #define PETSC_IGNORE NULL 514d382aafbSBarry Smith 515c528d872SBarry Smith /* This is deprecated */ 516c528d872SBarry Smith #define PETSC_NULL NULL 517c528d872SBarry Smith 518d382aafbSBarry Smith /*MC 519557d4da8SBarry Smith PETSC_DECIDE - standard way of passing in integer or floating point parameter 520557d4da8SBarry Smith where you wish PETSc to use the default. 521557d4da8SBarry Smith 522557d4da8SBarry Smith Level: beginner 523557d4da8SBarry Smith 524e28ce29aSPatrick Sanan .seealso: PETSC_DEFAULT, PETSC_IGNORE, PETSC_DETERMINE 525557d4da8SBarry Smith 526557d4da8SBarry Smith M*/ 527557d4da8SBarry Smith #define PETSC_DECIDE -1 528557d4da8SBarry Smith 529557d4da8SBarry Smith /*MC 530d382aafbSBarry Smith PETSC_DETERMINE - standard way of passing in integer or floating point parameter 531d382aafbSBarry Smith where you wish PETSc to compute the required value. 532d382aafbSBarry Smith 533d382aafbSBarry Smith Level: beginner 534d382aafbSBarry Smith 535e28ce29aSPatrick Sanan Developer Note: 536e28ce29aSPatrick Sanan I would like to use const PetscInt PETSC_DETERMINE = PETSC_DECIDE; but for 537557d4da8SBarry Smith some reason this is not allowed by the standard even though PETSC_DECIDE is a constant value. 538557d4da8SBarry Smith 5390298fd71SBarry Smith .seealso: PETSC_DECIDE, PETSC_DEFAULT, PETSC_IGNORE, VecSetSizes() 540d382aafbSBarry Smith 541d382aafbSBarry Smith M*/ 542d382aafbSBarry Smith #define PETSC_DETERMINE PETSC_DECIDE 543d382aafbSBarry Smith 544d382aafbSBarry Smith /*MC 545557d4da8SBarry Smith PETSC_DEFAULT - standard way of passing in integer or floating point parameter 546557d4da8SBarry Smith where you wish PETSc to use the default. 547557d4da8SBarry Smith 548557d4da8SBarry Smith Level: beginner 549557d4da8SBarry Smith 550e28ce29aSPatrick Sanan Fortran Notes: 551e28ce29aSPatrick Sanan You need to use PETSC_DEFAULT_INTEGER or PETSC_DEFAULT_REAL. 552557d4da8SBarry Smith 5530298fd71SBarry Smith .seealso: PETSC_DECIDE, PETSC_IGNORE, PETSC_DETERMINE 554557d4da8SBarry Smith 555557d4da8SBarry Smith M*/ 556557d4da8SBarry Smith #define PETSC_DEFAULT -2 557557d4da8SBarry Smith 558557d4da8SBarry Smith /*MC 559d382aafbSBarry Smith PETSC_COMM_WORLD - the equivalent of the MPI_COMM_WORLD communicator which represents 560d382aafbSBarry Smith all the processs that PETSc knows about. 561d382aafbSBarry Smith 562d382aafbSBarry Smith Level: beginner 563d382aafbSBarry Smith 564e28ce29aSPatrick Sanan Notes: 565e28ce29aSPatrick Sanan By default PETSC_COMM_WORLD and MPI_COMM_WORLD are identical unless you wish to 566d382aafbSBarry Smith run PETSc on ONLY a subset of MPI_COMM_WORLD. In that case create your new (smaller) 567d382aafbSBarry Smith communicator, call it, say comm, and set PETSC_COMM_WORLD = comm BEFORE calling 568a990b902SBarry Smith PetscInitialize(), but after MPI_Init() has been called. 569a990b902SBarry Smith 570a990b902SBarry Smith The value of PETSC_COMM_WORLD should never be USED/accessed before PetscInitialize() 571a990b902SBarry Smith is called because it may not have a valid value yet. 572d382aafbSBarry Smith 573d382aafbSBarry Smith .seealso: PETSC_COMM_SELF 574d382aafbSBarry Smith 575d382aafbSBarry Smith M*/ 576014dd563SJed Brown PETSC_EXTERN MPI_Comm PETSC_COMM_WORLD; 577d382aafbSBarry Smith 578d382aafbSBarry Smith /*MC 579503cfb0cSBarry Smith PETSC_COMM_SELF - This is always MPI_COMM_SELF 580d382aafbSBarry Smith 581d382aafbSBarry Smith Level: beginner 582d382aafbSBarry Smith 583e28ce29aSPatrick Sanan Notes: 584e28ce29aSPatrick Sanan Do not USE/access or set this variable before PetscInitialize() has been called. 585a990b902SBarry Smith 586d382aafbSBarry Smith .seealso: PETSC_COMM_WORLD 587d382aafbSBarry Smith 588d382aafbSBarry Smith M*/ 589d382aafbSBarry Smith #define PETSC_COMM_SELF MPI_COMM_SELF 590d382aafbSBarry Smith 591d6f2c3cbSBarry Smith PETSC_EXTERN PetscBool PetscBeganMPI; 592014dd563SJed Brown PETSC_EXTERN PetscBool PetscInitializeCalled; 593014dd563SJed Brown PETSC_EXTERN PetscBool PetscFinalizeCalled; 594014dd563SJed Brown PETSC_EXTERN PetscBool PetscCUSPSynchronize; 5954cf1874eSKarl Rupp PETSC_EXTERN PetscBool PetscViennaCLSynchronize; 59682f73ecaSAlejandro Lamas Daviña PETSC_EXTERN PetscBool PetscCUDASynchronize; 597d382aafbSBarry Smith 598014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSetHelpVersionFunctions(PetscErrorCode (*)(MPI_Comm),PetscErrorCode (*)(MPI_Comm)); 599014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscCommDuplicate(MPI_Comm,MPI_Comm*,int*); 600014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscCommDestroy(MPI_Comm*); 601d382aafbSBarry Smith 602d382aafbSBarry Smith /*MC 60395dccacaSBarry Smith PetscMalloc - Allocates memory, One should use PetscNew(), PetscMalloc1() or PetscCalloc1() usually instead of this 604d382aafbSBarry Smith 605eca87e8dSBarry Smith Synopsis: 606aaa7dc30SBarry Smith #include <petscsys.h> 607eca87e8dSBarry Smith PetscErrorCode PetscMalloc(size_t m,void **result) 608eca87e8dSBarry Smith 609eca87e8dSBarry Smith Not Collective 610eca87e8dSBarry Smith 611d382aafbSBarry Smith Input Parameter: 612d382aafbSBarry Smith . m - number of bytes to allocate 613d382aafbSBarry Smith 614d382aafbSBarry Smith Output Parameter: 615d382aafbSBarry Smith . result - memory allocated 616d382aafbSBarry Smith 617d382aafbSBarry Smith Level: beginner 618d382aafbSBarry Smith 61949d7da52SJed Brown Notes: 62049d7da52SJed Brown Memory is always allocated at least double aligned 621d382aafbSBarry Smith 62249d7da52SJed Brown It is safe to allocate size 0 and pass the resulting pointer (which may or may not be NULL) to PetscFree(). 623d382aafbSBarry Smith 624d382aafbSBarry Smith .seealso: PetscFree(), PetscNew() 625d382aafbSBarry Smith 626d382aafbSBarry Smith Concepts: memory allocation 627d382aafbSBarry Smith 628d382aafbSBarry Smith M*/ 62949d7da52SJed Brown #define PetscMalloc(a,b) ((*PetscTrMalloc)((a),__LINE__,PETSC_FUNCTION_NAME,__FILE__,(void**)(b))) 630d382aafbSBarry Smith 631d382aafbSBarry Smith /*MC 6323221ece2SMatthew G. Knepley PetscRealloc - Rellocates memory 6333221ece2SMatthew G. Knepley 6343221ece2SMatthew G. Knepley Synopsis: 6353221ece2SMatthew G. Knepley #include <petscsys.h> 6363221ece2SMatthew G. Knepley PetscErrorCode PetscRealloc(size_t m,void **result) 6373221ece2SMatthew G. Knepley 6383221ece2SMatthew G. Knepley Not Collective 6393221ece2SMatthew G. Knepley 6403221ece2SMatthew G. Knepley Input Parameters: 6413221ece2SMatthew G. Knepley + m - number of bytes to allocate 6423221ece2SMatthew G. Knepley - result - initial memory allocated 6433221ece2SMatthew G. Knepley 6443221ece2SMatthew G. Knepley Output Parameter: 6453221ece2SMatthew G. Knepley . result - new memory allocated 6463221ece2SMatthew G. Knepley 6473221ece2SMatthew G. Knepley Level: developer 6483221ece2SMatthew G. Knepley 6493221ece2SMatthew G. Knepley Notes: 6503221ece2SMatthew G. Knepley Memory is always allocated at least double aligned 6513221ece2SMatthew G. Knepley 6523221ece2SMatthew G. Knepley .seealso: PetscMalloc(), PetscFree(), PetscNew() 6533221ece2SMatthew G. Knepley 6543221ece2SMatthew G. Knepley Concepts: memory allocation 6553221ece2SMatthew G. Knepley 6563221ece2SMatthew G. Knepley M*/ 6573221ece2SMatthew G. Knepley #define PetscRealloc(a,b) ((*PetscTrRealloc)((a),__LINE__,PETSC_FUNCTION_NAME,__FILE__,(void**)(b))) 6583221ece2SMatthew G. Knepley 6593221ece2SMatthew G. Knepley /*MC 660503cfb0cSBarry Smith PetscAddrAlign - Rounds up an address to PETSC_MEMALIGN alignment 661d382aafbSBarry Smith 662d382aafbSBarry Smith Synopsis: 663aaa7dc30SBarry Smith #include <petscsys.h> 664d382aafbSBarry Smith void *PetscAddrAlign(void *addr) 665d382aafbSBarry Smith 666eca87e8dSBarry Smith Not Collective 667eca87e8dSBarry Smith 668eca87e8dSBarry Smith Input Parameters: 669eca87e8dSBarry Smith . addr - address to align (any pointer type) 670eca87e8dSBarry Smith 671d382aafbSBarry Smith Level: developer 672d382aafbSBarry Smith 673d382aafbSBarry Smith .seealso: PetscMallocAlign() 674d382aafbSBarry Smith 675d382aafbSBarry Smith Concepts: memory allocation 676d382aafbSBarry Smith M*/ 677d382aafbSBarry Smith #define PetscAddrAlign(a) (void*)((((PETSC_UINTPTR_T)(a))+(PETSC_MEMALIGN-1)) & ~(PETSC_MEMALIGN-1)) 678d382aafbSBarry Smith 679d382aafbSBarry Smith /*MC 680785e854fSJed Brown PetscMalloc1 - Allocates an array of memory aligned to PETSC_MEMALIGN 681d382aafbSBarry Smith 682eca87e8dSBarry Smith Synopsis: 683aaa7dc30SBarry Smith #include <petscsys.h> 684785e854fSJed Brown PetscErrorCode PetscMalloc1(size_t m1,type **r1) 685785e854fSJed Brown 686785e854fSJed Brown Not Collective 687785e854fSJed Brown 688785e854fSJed Brown Input Parameter: 689390e1bf2SBarry Smith . m1 - number of elements to allocate (may be zero) 690785e854fSJed Brown 691785e854fSJed Brown Output Parameter: 692785e854fSJed Brown . r1 - memory allocated in first chunk 693785e854fSJed Brown 694e28ce29aSPatrick Sanan Note: 695e28ce29aSPatrick Sanan This uses the sizeof() of the memory type requested to determine the total memory to be allocated, therefore you should not 696390e1bf2SBarry Smith multiply the number of elements requested by the sizeof() the type. For example use 697390e1bf2SBarry Smith $ PetscInt *id; 698390e1bf2SBarry Smith $ PetscMalloc1(10,&id); 699390e1bf2SBarry Smith not 700390e1bf2SBarry Smith $ PetscInt *id; 701390e1bf2SBarry Smith $ PetscMalloc1(10*sizeof(PetscInt),&id); 702390e1bf2SBarry Smith 703390e1bf2SBarry Smith Does not zero the memory allocatd, used PetscCalloc1() to obtain memory that has been zeroed. 704390e1bf2SBarry Smith 705390e1bf2SBarry Smith Level: beginner 706785e854fSJed Brown 7071795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscCalloc1(), PetscMalloc2() 708785e854fSJed Brown 709785e854fSJed Brown Concepts: memory allocation 710785e854fSJed Brown 711785e854fSJed Brown M*/ 712f0ba7cfcSLisandro Dalcin #define PetscMalloc1(m1,r1) PetscMalloc((m1)*sizeof(**(r1)),r1) 713785e854fSJed Brown 714785e854fSJed Brown /*MC 7151795a4d1SJed Brown PetscCalloc1 - Allocates a cleared (zeroed) array of memory aligned to PETSC_MEMALIGN 7161795a4d1SJed Brown 7171795a4d1SJed Brown Synopsis: 718aaa7dc30SBarry Smith #include <petscsys.h> 7191795a4d1SJed Brown PetscErrorCode PetscCalloc1(size_t m1,type **r1) 7201795a4d1SJed Brown 7211795a4d1SJed Brown Not Collective 7221795a4d1SJed Brown 7231795a4d1SJed Brown Input Parameter: 7241795a4d1SJed Brown . m1 - number of elements to allocate in 1st chunk (may be zero) 7251795a4d1SJed Brown 7261795a4d1SJed Brown Output Parameter: 7271795a4d1SJed Brown . r1 - memory allocated in first chunk 7281795a4d1SJed Brown 729e28ce29aSPatrick Sanan Notes: 730e28ce29aSPatrick Sanan See PetsMalloc1() for more details on usage. 731390e1bf2SBarry Smith 732390e1bf2SBarry Smith Level: beginner 7331795a4d1SJed Brown 7341795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc1(), PetscCalloc2() 7351795a4d1SJed Brown 7361795a4d1SJed Brown Concepts: memory allocation 7371795a4d1SJed Brown 7381795a4d1SJed Brown M*/ 7391795a4d1SJed Brown #define PetscCalloc1(m1,r1) (PetscMalloc1((m1),r1) || PetscMemzero(*(r1),(m1)*sizeof(**(r1)))) 7401795a4d1SJed Brown 7411795a4d1SJed Brown /*MC 742dcca6d9dSJed Brown PetscMalloc2 - Allocates 2 arrays of memory both aligned to PETSC_MEMALIGN 743d382aafbSBarry Smith 744eca87e8dSBarry Smith Synopsis: 745aaa7dc30SBarry Smith #include <petscsys.h> 746dcca6d9dSJed Brown PetscErrorCode PetscMalloc2(size_t m1,type **r1,size_t m2,type **r2) 747eca87e8dSBarry Smith 748eca87e8dSBarry Smith Not Collective 749eca87e8dSBarry Smith 750d382aafbSBarry Smith Input Parameter: 751d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 752dcca6d9dSJed Brown - m2 - number of elements to allocate in 2nd chunk (may be zero) 753d382aafbSBarry Smith 754d382aafbSBarry Smith Output Parameter: 755d382aafbSBarry Smith + r1 - memory allocated in first chunk 756d382aafbSBarry Smith - r2 - memory allocated in second chunk 757d382aafbSBarry Smith 758d382aafbSBarry Smith Level: developer 759d382aafbSBarry Smith 7601795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc1(), PetscCalloc2() 761d382aafbSBarry Smith 762d382aafbSBarry Smith Concepts: memory allocation 763d382aafbSBarry Smith 764d382aafbSBarry Smith M*/ 76520a89254SJed Brown #if !defined(PETSC_USE_MALLOC_COALESCED) 7661d2f33c5SMatthew G. Knepley #define PetscMalloc2(m1,r1,m2,r2) (PetscMalloc1((m1),(r1)) || PetscMalloc1((m2),(r2))) 767d382aafbSBarry Smith #else 768ceba6b73SMatthew G. Knepley #define PetscMalloc2(m1,r1,m2,r2) ((((m1)+(m2)) ? (*(r2) = 0,PetscMalloc((m1)*sizeof(**(r1))+(m2)*sizeof(**(r2))+(PETSC_MEMALIGN-1),r1)) : 0) \ 769ceba6b73SMatthew G. Knepley || (*(void**)(r2) = PetscAddrAlign(*(r1)+(m1)),0) \ 77001b1da61SJed Brown || (0==(m1) ? (*(r1) = 0,0) : 0) || (0==(m2) ? (*(r2) = 0,0) : 0)) 771d382aafbSBarry Smith #endif 772d382aafbSBarry Smith 773d382aafbSBarry Smith /*MC 7741795a4d1SJed Brown PetscCalloc2 - Allocates 2 cleared (zeroed) arrays of memory both aligned to PETSC_MEMALIGN 775d382aafbSBarry Smith 776eca87e8dSBarry Smith Synopsis: 777aaa7dc30SBarry Smith #include <petscsys.h> 7781795a4d1SJed Brown PetscErrorCode PetscCalloc2(size_t m1,type **r1,size_t m2,type **r2) 779eca87e8dSBarry Smith 780eca87e8dSBarry Smith Not Collective 781eca87e8dSBarry Smith 782d382aafbSBarry Smith Input Parameter: 783d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 7841795a4d1SJed Brown - m2 - number of elements to allocate in 2nd chunk (may be zero) 7851795a4d1SJed Brown 7861795a4d1SJed Brown Output Parameter: 7871795a4d1SJed Brown + r1 - memory allocated in first chunk 7881795a4d1SJed Brown - r2 - memory allocated in second chunk 7891795a4d1SJed Brown 7901795a4d1SJed Brown Level: developer 7911795a4d1SJed Brown 7921795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscCalloc1(), PetscMalloc2() 7931795a4d1SJed Brown 7941795a4d1SJed Brown Concepts: memory allocation 7951795a4d1SJed Brown M*/ 7961795a4d1SJed Brown #define PetscCalloc2(m1,r1,m2,r2) (PetscMalloc2((m1),(r1),(m2),(r2)) || PetscMemzero(*(r1),(m1)*sizeof(**(r1))) || PetscMemzero(*(r2),(m2)*sizeof(**(r2)))) 7971795a4d1SJed Brown 7981795a4d1SJed Brown /*MC 799dcca6d9dSJed Brown PetscMalloc3 - Allocates 3 arrays of memory, all aligned to PETSC_MEMALIGN 800d382aafbSBarry Smith 801d382aafbSBarry Smith Synopsis: 802aaa7dc30SBarry Smith #include <petscsys.h> 803dcca6d9dSJed Brown PetscErrorCode PetscMalloc3(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3) 804d382aafbSBarry Smith 805d382aafbSBarry Smith Not Collective 806d382aafbSBarry Smith 807d382aafbSBarry Smith Input Parameter: 808d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 809d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 810dcca6d9dSJed Brown - m3 - number of elements to allocate in 3rd chunk (may be zero) 811d382aafbSBarry Smith 812d382aafbSBarry Smith Output Parameter: 813d382aafbSBarry Smith + r1 - memory allocated in first chunk 814d382aafbSBarry Smith . r2 - memory allocated in second chunk 815d382aafbSBarry Smith - r3 - memory allocated in third chunk 816d382aafbSBarry Smith 817d382aafbSBarry Smith Level: developer 818d382aafbSBarry Smith 8191795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscCalloc3(), PetscFree3() 820d382aafbSBarry Smith 821d382aafbSBarry Smith Concepts: memory allocation 822d382aafbSBarry Smith 823d382aafbSBarry Smith M*/ 82420a89254SJed Brown #if !defined(PETSC_USE_MALLOC_COALESCED) 8251d2f33c5SMatthew G. Knepley #define PetscMalloc3(m1,r1,m2,r2,m3,r3) (PetscMalloc1((m1),(r1)) || PetscMalloc1((m2),(r2)) || PetscMalloc1((m3),(r3))) 826d382aafbSBarry Smith #else 827ceba6b73SMatthew G. Knepley #define PetscMalloc3(m1,r1,m2,r2,m3,r3) ((((m1)+(m2)+(m3)) ? (*(r2) = 0,*(r3) = 0,PetscMalloc((m1)*sizeof(**(r1))+(m2)*sizeof(**(r2))+(m3)*sizeof(**(r3))+2*(PETSC_MEMALIGN-1),r1)) : 0) \ 828278791cbSMatthew G. Knepley || (*(void**)(r2) = PetscAddrAlign(*(r1)+(m1)),*(void**)(r3) = PetscAddrAlign(*(r2)+(m2)),0) \ 82901b1da61SJed Brown || (0==(m1) ? (*(r1) = 0,0) : 0) || (0==(m2) ? (*(r2) = 0,0) : 0) || (0==(m3) ? (*(r3) = 0,0) : 0)) 830d382aafbSBarry Smith #endif 831d382aafbSBarry Smith 832d382aafbSBarry Smith /*MC 8331795a4d1SJed Brown PetscCalloc3 - Allocates 3 cleared (zeroed) arrays of memory, all aligned to PETSC_MEMALIGN 834d382aafbSBarry Smith 835eca87e8dSBarry Smith Synopsis: 836aaa7dc30SBarry Smith #include <petscsys.h> 8371795a4d1SJed Brown PetscErrorCode PetscCalloc3(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3) 838eca87e8dSBarry Smith 839eca87e8dSBarry Smith Not Collective 840eca87e8dSBarry Smith 841d382aafbSBarry Smith Input Parameter: 842d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 843d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 8441795a4d1SJed Brown - m3 - number of elements to allocate in 3rd chunk (may be zero) 8451795a4d1SJed Brown 8461795a4d1SJed Brown Output Parameter: 8471795a4d1SJed Brown + r1 - memory allocated in first chunk 8481795a4d1SJed Brown . r2 - memory allocated in second chunk 8491795a4d1SJed Brown - r3 - memory allocated in third chunk 8501795a4d1SJed Brown 8511795a4d1SJed Brown Level: developer 8521795a4d1SJed Brown 8531795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscCalloc2(), PetscMalloc3(), PetscFree3() 8541795a4d1SJed Brown 8551795a4d1SJed Brown Concepts: memory allocation 8561795a4d1SJed Brown M*/ 8571795a4d1SJed Brown #define PetscCalloc3(m1,r1,m2,r2,m3,r3) \ 8581795a4d1SJed Brown (PetscMalloc3((m1),(r1),(m2),(r2),(m3),(r3)) \ 8591795a4d1SJed Brown || PetscMemzero(*(r1),(m1)*sizeof(**(r1))) || PetscMemzero(*(r2),(m2)*sizeof(**(r2))) || PetscMemzero(*(r3),(m3)*sizeof(**(r3)))) 8601795a4d1SJed Brown 8611795a4d1SJed Brown /*MC 862dcca6d9dSJed Brown PetscMalloc4 - Allocates 4 arrays of memory, all aligned to PETSC_MEMALIGN 863d382aafbSBarry Smith 864d382aafbSBarry Smith Synopsis: 865aaa7dc30SBarry Smith #include <petscsys.h> 866dcca6d9dSJed Brown PetscErrorCode PetscMalloc4(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3,size_t m4,type **r4) 867d382aafbSBarry Smith 868d382aafbSBarry Smith Not Collective 869d382aafbSBarry Smith 870d382aafbSBarry Smith Input Parameter: 871d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 872d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 873d382aafbSBarry Smith . m3 - number of elements to allocate in 3rd chunk (may be zero) 874dcca6d9dSJed Brown - m4 - number of elements to allocate in 4th chunk (may be zero) 875d382aafbSBarry Smith 876d382aafbSBarry Smith Output Parameter: 877d382aafbSBarry Smith + r1 - memory allocated in first chunk 878d382aafbSBarry Smith . r2 - memory allocated in second chunk 879d382aafbSBarry Smith . r3 - memory allocated in third chunk 880d382aafbSBarry Smith - r4 - memory allocated in fourth chunk 881d382aafbSBarry Smith 882d382aafbSBarry Smith Level: developer 883d382aafbSBarry Smith 8841795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscCalloc4(), PetscFree4() 885d382aafbSBarry Smith 886d382aafbSBarry Smith Concepts: memory allocation 887d382aafbSBarry Smith 888d382aafbSBarry Smith M*/ 88920a89254SJed Brown #if !defined(PETSC_USE_MALLOC_COALESCED) 8901d2f33c5SMatthew G. Knepley #define PetscMalloc4(m1,r1,m2,r2,m3,r3,m4,r4) (PetscMalloc1((m1),(r1)) || PetscMalloc1((m2),(r2)) || PetscMalloc1((m3),(r3)) || PetscMalloc1((m4),(r4))) 891d382aafbSBarry Smith #else 892dcca6d9dSJed Brown #define PetscMalloc4(m1,r1,m2,r2,m3,r3,m4,r4) \ 893ceba6b73SMatthew G. Knepley ((((m1)+(m2)+(m3)+(m4)) ? (*(r2) = 0, *(r3) = 0, *(r4) = 0,PetscMalloc((m1)*sizeof(**(r1))+(m2)*sizeof(**(r2))+(m3)*sizeof(**(r3))+(m4)*sizeof(**(r4))+3*(PETSC_MEMALIGN-1),r1)) : 0) \ 894278791cbSMatthew G. Knepley || (*(void**)(r2) = PetscAddrAlign(*(r1)+(m1)),*(void**)(r3) = PetscAddrAlign(*(r2)+(m2)),*(void**)(r4) = PetscAddrAlign(*(r3)+(m3)),0) \ 89501b1da61SJed Brown || (0==(m1) ? (*(r1) = 0,0) : 0) || (0==(m2) ? (*(r2) = 0,0) : 0) || (0==(m3) ? (*(r3) = 0,0) : 0) || (0==(m4) ? (*(r4) = 0,0) : 0)) 896d382aafbSBarry Smith #endif 897d382aafbSBarry Smith 898d382aafbSBarry Smith /*MC 8991795a4d1SJed Brown PetscCalloc4 - Allocates 4 cleared (zeroed) arrays of memory, all aligned to PETSC_MEMALIGN 900d382aafbSBarry Smith 901eca87e8dSBarry Smith Synopsis: 902aaa7dc30SBarry Smith #include <petscsys.h> 9031795a4d1SJed Brown PetscErrorCode PetscCalloc4(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3,size_t m4,type **r4) 904eca87e8dSBarry Smith 905eca87e8dSBarry Smith Not Collective 906eca87e8dSBarry Smith 907e28ce29aSPatrick Sanan Input Parameters: 908d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 909d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 910d382aafbSBarry Smith . m3 - number of elements to allocate in 3rd chunk (may be zero) 9111795a4d1SJed Brown - m4 - number of elements to allocate in 4th chunk (may be zero) 9121795a4d1SJed Brown 913e28ce29aSPatrick Sanan Output Parameters: 9141795a4d1SJed Brown + r1 - memory allocated in first chunk 9151795a4d1SJed Brown . r2 - memory allocated in second chunk 9161795a4d1SJed Brown . r3 - memory allocated in third chunk 9171795a4d1SJed Brown - r4 - memory allocated in fourth chunk 9181795a4d1SJed Brown 9191795a4d1SJed Brown Level: developer 9201795a4d1SJed Brown 9211795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscCalloc4(), PetscFree4() 9221795a4d1SJed Brown 9231795a4d1SJed Brown Concepts: memory allocation 9241795a4d1SJed Brown 9251795a4d1SJed Brown M*/ 9261795a4d1SJed Brown #define PetscCalloc4(m1,r1,m2,r2,m3,r3,m4,r4) \ 9271795a4d1SJed Brown (PetscMalloc4(m1,r1,m2,r2,m3,r3,m4,r4) \ 9281795a4d1SJed Brown || PetscMemzero(*(r1),(m1)*sizeof(**(r1))) || PetscMemzero(*(r2),(m2)*sizeof(**(r2))) || PetscMemzero(*(r3),(m3)*sizeof(**(r3))) \ 9291795a4d1SJed Brown || PetscMemzero(*(r4),(m4)*sizeof(**(r4)))) 9301795a4d1SJed Brown 9311795a4d1SJed Brown /*MC 932dcca6d9dSJed Brown PetscMalloc5 - Allocates 5 arrays of memory, all aligned to PETSC_MEMALIGN 933d382aafbSBarry Smith 934d382aafbSBarry Smith Synopsis: 935aaa7dc30SBarry Smith #include <petscsys.h> 936dcca6d9dSJed Brown PetscErrorCode PetscMalloc5(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3,size_t m4,type **r4,size_t m5,type **r5) 937d382aafbSBarry Smith 938d382aafbSBarry Smith Not Collective 939d382aafbSBarry Smith 940e28ce29aSPatrick Sanan Input Parameters: 941d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 942d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 943d382aafbSBarry Smith . m3 - number of elements to allocate in 3rd chunk (may be zero) 944d382aafbSBarry Smith . m4 - number of elements to allocate in 4th chunk (may be zero) 945dcca6d9dSJed Brown - m5 - number of elements to allocate in 5th chunk (may be zero) 946d382aafbSBarry Smith 947e28ce29aSPatrick Sanan Output Parameters: 948d382aafbSBarry Smith + r1 - memory allocated in first chunk 949d382aafbSBarry Smith . r2 - memory allocated in second chunk 950d382aafbSBarry Smith . r3 - memory allocated in third chunk 951d382aafbSBarry Smith . r4 - memory allocated in fourth chunk 952d382aafbSBarry Smith - r5 - memory allocated in fifth chunk 953d382aafbSBarry Smith 954d382aafbSBarry Smith Level: developer 955d382aafbSBarry Smith 9561795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscCalloc5(), PetscFree5() 957d382aafbSBarry Smith 958d382aafbSBarry Smith Concepts: memory allocation 959d382aafbSBarry Smith 960d382aafbSBarry Smith M*/ 96120a89254SJed Brown #if !defined(PETSC_USE_MALLOC_COALESCED) 9621d2f33c5SMatthew G. Knepley #define PetscMalloc5(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5) (PetscMalloc1((m1),(r1)) || PetscMalloc1((m2),(r2)) || PetscMalloc1((m3),(r3)) || PetscMalloc1((m4),(r4)) || PetscMalloc1((m5),(r5))) 963d382aafbSBarry Smith #else 964dcca6d9dSJed Brown #define PetscMalloc5(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5) \ 965ceba6b73SMatthew G. Knepley ((((m1)+(m2)+(m3)+(m4)+(m5)) ? (*(r2) = 0, *(r3) = 0, *(r4) = 0,*(r5) = 0,PetscMalloc((m1)*sizeof(**(r1))+(m2)*sizeof(**(r2))+(m3)*sizeof(**(r3))+(m4)*sizeof(**(r4))+(m5)*sizeof(**(r5))+4*(PETSC_MEMALIGN-1),r1)) : 0) \ 966278791cbSMatthew G. Knepley || (*(void**)(r2) = PetscAddrAlign(*(r1)+(m1)),*(void**)(r3) = PetscAddrAlign(*(r2)+(m2)),*(void**)(r4) = PetscAddrAlign(*(r3)+(m3)),*(void**)(r5) = PetscAddrAlign(*(r4)+(m4)),0) \ 96701b1da61SJed Brown || (0==(m1) ? (*(r1) = 0,0) : 0) || (0==(m2) ? (*(r2) = 0,0) : 0) || (0==(m3) ? (*(r3) = 0,0) : 0) || (0==(m4) ? (*(r4) = 0,0) : 0) || (0==(m5) ? (*(r5) = 0,0) : 0)) 968d382aafbSBarry Smith #endif 969d382aafbSBarry Smith 970d382aafbSBarry Smith /*MC 9711795a4d1SJed Brown PetscCalloc5 - Allocates 5 cleared (zeroed) arrays of memory, all aligned to PETSC_MEMALIGN 972d382aafbSBarry Smith 973eca87e8dSBarry Smith Synopsis: 974aaa7dc30SBarry Smith #include <petscsys.h> 9751795a4d1SJed Brown PetscErrorCode PetscCalloc5(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3,size_t m4,type **r4,size_t m5,type **r5) 976eca87e8dSBarry Smith 977eca87e8dSBarry Smith Not Collective 978eca87e8dSBarry Smith 979e28ce29aSPatrick Sanan Input Parameters: 980d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 981d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 982d382aafbSBarry Smith . m3 - number of elements to allocate in 3rd chunk (may be zero) 983d382aafbSBarry Smith . m4 - number of elements to allocate in 4th chunk (may be zero) 9841795a4d1SJed Brown - m5 - number of elements to allocate in 5th chunk (may be zero) 9851795a4d1SJed Brown 986e28ce29aSPatrick Sanan Output Parameters: 9871795a4d1SJed Brown + r1 - memory allocated in first chunk 9881795a4d1SJed Brown . r2 - memory allocated in second chunk 9891795a4d1SJed Brown . r3 - memory allocated in third chunk 9901795a4d1SJed Brown . r4 - memory allocated in fourth chunk 9911795a4d1SJed Brown - r5 - memory allocated in fifth chunk 9921795a4d1SJed Brown 9931795a4d1SJed Brown Level: developer 9941795a4d1SJed Brown 9951795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc5(), PetscFree5() 9961795a4d1SJed Brown 9971795a4d1SJed Brown Concepts: memory allocation 9981795a4d1SJed Brown 9991795a4d1SJed Brown M*/ 10001795a4d1SJed Brown #define PetscCalloc5(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5) \ 10011795a4d1SJed Brown (PetscMalloc5(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5) \ 10021795a4d1SJed Brown || PetscMemzero(*(r1),(m1)*sizeof(**(r1))) || PetscMemzero(*(r2),(m2)*sizeof(**(r2))) || PetscMemzero(*(r3),(m3)*sizeof(**(r3))) \ 10031795a4d1SJed Brown || PetscMemzero(*(r4),(m4)*sizeof(**(r4))) || PetscMemzero(*(r5),(m5)*sizeof(**(r5)))) 1004d382aafbSBarry Smith 1005d382aafbSBarry Smith /*MC 1006dcca6d9dSJed Brown PetscMalloc6 - Allocates 6 arrays of memory, all aligned to PETSC_MEMALIGN 1007d382aafbSBarry Smith 1008d382aafbSBarry Smith Synopsis: 1009aaa7dc30SBarry Smith #include <petscsys.h> 1010dcca6d9dSJed Brown PetscErrorCode PetscMalloc6(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3,size_t m4,type **r4,size_t m5,type **r5,size_t m6,type **r6) 1011d382aafbSBarry Smith 1012d382aafbSBarry Smith Not Collective 1013d382aafbSBarry Smith 1014e28ce29aSPatrick Sanan Input Parameters: 1015d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 1016d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 1017d382aafbSBarry Smith . m3 - number of elements to allocate in 3rd chunk (may be zero) 1018d382aafbSBarry Smith . m4 - number of elements to allocate in 4th chunk (may be zero) 1019d382aafbSBarry Smith . m5 - number of elements to allocate in 5th chunk (may be zero) 1020dcca6d9dSJed Brown - m6 - number of elements to allocate in 6th chunk (may be zero) 1021d382aafbSBarry Smith 1022e28ce29aSPatrick Sanan Output Parameteasr: 1023d382aafbSBarry Smith + r1 - memory allocated in first chunk 1024d382aafbSBarry Smith . r2 - memory allocated in second chunk 1025d382aafbSBarry Smith . r3 - memory allocated in third chunk 1026d382aafbSBarry Smith . r4 - memory allocated in fourth chunk 1027d382aafbSBarry Smith . r5 - memory allocated in fifth chunk 1028d382aafbSBarry Smith - r6 - memory allocated in sixth chunk 1029d382aafbSBarry Smith 1030d382aafbSBarry Smith Level: developer 1031d382aafbSBarry Smith 10321795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscCalloc6(), PetscFree3(), PetscFree4(), PetscFree5(), PetscFree6() 1033d382aafbSBarry Smith 1034d382aafbSBarry Smith Concepts: memory allocation 1035d382aafbSBarry Smith 1036d382aafbSBarry Smith M*/ 103720a89254SJed Brown #if !defined(PETSC_USE_MALLOC_COALESCED) 10381d2f33c5SMatthew G. Knepley #define PetscMalloc6(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5,m6,r6) (PetscMalloc1((m1),(r1)) || PetscMalloc1((m2),(r2)) || PetscMalloc1((m3),(r3)) || PetscMalloc1((m4),(r4)) || PetscMalloc1((m5),(r5)) || PetscMalloc1((m6),(r6))) 1039d382aafbSBarry Smith #else 1040dcca6d9dSJed Brown #define PetscMalloc6(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5,m6,r6) \ 1041ceba6b73SMatthew G. Knepley ((((m1)+(m2)+(m3)+(m4)+(m5)+(m6)) ? (*(r2) = 0, *(r3) = 0, *(r4) = 0,*(r5) = 0,*(r6) = 0,PetscMalloc((m1)*sizeof(**(r1))+(m2)*sizeof(**(r2))+(m3)*sizeof(**(r3))+(m4)*sizeof(**(r4))+(m5)*sizeof(**(r5))+(m6)*sizeof(**(r6))+5*(PETSC_MEMALIGN-1),r1)) : 0) \ 1042278791cbSMatthew G. Knepley || (*(void**)(r2) = PetscAddrAlign(*(r1)+(m1)),*(void**)(r3) = PetscAddrAlign(*(r2)+(m2)),*(void**)(r4) = PetscAddrAlign(*(r3)+(m3)),*(void**)(r5) = PetscAddrAlign(*(r4)+(m4)),*(void**)(r6) = PetscAddrAlign(*(r5)+(m5)),0) \ 104301b1da61SJed Brown || (0==(m1) ? (*(r1) = 0,0) : 0) || (0==(m2) ? (*(r2) = 0,0) : 0) || (0==(m3) ? (*(r3) = 0,0) : 0) || (0==(m4) ? (*(r4) = 0,0) : 0) || (0==(m5) ? (*(r5) = 0,0) : 0) || (0==(m6) ? (*(r6) = 0,0) : 0)) 1044d382aafbSBarry Smith #endif 1045d382aafbSBarry Smith 1046d382aafbSBarry Smith /*MC 10471795a4d1SJed Brown PetscCalloc6 - Allocates 6 cleared (zeroed) arrays of memory, all aligned to PETSC_MEMALIGN 1048d382aafbSBarry Smith 1049eca87e8dSBarry Smith Synopsis: 1050aaa7dc30SBarry Smith #include <petscsys.h> 10511795a4d1SJed Brown PetscErrorCode PetscCalloc6(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3,size_t m4,type **r4,size_t m5,type **r5,size_t m6,type **r6) 1052eca87e8dSBarry Smith 1053eca87e8dSBarry Smith Not Collective 1054eca87e8dSBarry Smith 1055e28ce29aSPatrick Sanan Input Parameters: 1056d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 1057d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 1058d382aafbSBarry Smith . m3 - number of elements to allocate in 3rd chunk (may be zero) 1059d382aafbSBarry Smith . m4 - number of elements to allocate in 4th chunk (may be zero) 1060d382aafbSBarry Smith . m5 - number of elements to allocate in 5th chunk (may be zero) 10611795a4d1SJed Brown - m6 - number of elements to allocate in 6th chunk (may be zero) 10621795a4d1SJed Brown 1063e28ce29aSPatrick Sanan Output Parameters: 10641795a4d1SJed Brown + r1 - memory allocated in first chunk 10651795a4d1SJed Brown . r2 - memory allocated in second chunk 10661795a4d1SJed Brown . r3 - memory allocated in third chunk 10671795a4d1SJed Brown . r4 - memory allocated in fourth chunk 10681795a4d1SJed Brown . r5 - memory allocated in fifth chunk 10691795a4d1SJed Brown - r6 - memory allocated in sixth chunk 10701795a4d1SJed Brown 10711795a4d1SJed Brown Level: developer 10721795a4d1SJed Brown 10731795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscMalloc6(), PetscFree6() 10741795a4d1SJed Brown 10751795a4d1SJed Brown Concepts: memory allocation 10761795a4d1SJed Brown M*/ 10771795a4d1SJed Brown #define PetscCalloc6(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5,m6,r6) \ 10781795a4d1SJed Brown (PetscMalloc6(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5,m6,r6) \ 10791795a4d1SJed Brown || PetscMemzero(*(r1),(m1)*sizeof(**(r1))) || PetscMemzero(*(r2),(m2)*sizeof(**(r2))) || PetscMemzero(*(r3),(m3)*sizeof(**(r3))) \ 10801795a4d1SJed Brown || PetscMemzero(*(r4),(m4)*sizeof(**(r4))) || PetscMemzero(*(r5),(m5)*sizeof(**(r5))) || PetscMemzero(*(r6),(m6)*sizeof(**(r6)))) 10811795a4d1SJed Brown 10821795a4d1SJed Brown /*MC 1083dcca6d9dSJed Brown PetscMalloc7 - Allocates 7 arrays of memory, all aligned to PETSC_MEMALIGN 1084d382aafbSBarry Smith 1085d382aafbSBarry Smith Synopsis: 1086aaa7dc30SBarry Smith #include <petscsys.h> 1087dcca6d9dSJed Brown PetscErrorCode PetscMalloc7(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3,size_t m4,type **r4,size_t m5,type **r5,size_t m6,type **r6,size_t m7,type **r7) 1088d382aafbSBarry Smith 1089d382aafbSBarry Smith Not Collective 1090d382aafbSBarry Smith 1091e28ce29aSPatrick Sanan Input Parameters: 1092d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 1093d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 1094d382aafbSBarry Smith . m3 - number of elements to allocate in 3rd chunk (may be zero) 1095d382aafbSBarry Smith . m4 - number of elements to allocate in 4th chunk (may be zero) 1096d382aafbSBarry Smith . m5 - number of elements to allocate in 5th chunk (may be zero) 1097d382aafbSBarry Smith . m6 - number of elements to allocate in 6th chunk (may be zero) 1098dcca6d9dSJed Brown - m7 - number of elements to allocate in 7th chunk (may be zero) 1099d382aafbSBarry Smith 1100e28ce29aSPatrick Sanan Output Parameters: 1101d382aafbSBarry Smith + r1 - memory allocated in first chunk 1102d382aafbSBarry Smith . r2 - memory allocated in second chunk 1103d382aafbSBarry Smith . r3 - memory allocated in third chunk 1104d382aafbSBarry Smith . r4 - memory allocated in fourth chunk 1105d382aafbSBarry Smith . r5 - memory allocated in fifth chunk 1106d382aafbSBarry Smith . r6 - memory allocated in sixth chunk 1107eca87e8dSBarry Smith - r7 - memory allocated in seventh chunk 1108d382aafbSBarry Smith 1109d382aafbSBarry Smith Level: developer 1110d382aafbSBarry Smith 11111795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscCalloc7(), PetscFree7() 1112d382aafbSBarry Smith 1113d382aafbSBarry Smith Concepts: memory allocation 1114d382aafbSBarry Smith 1115d382aafbSBarry Smith M*/ 111620a89254SJed Brown #if !defined(PETSC_USE_MALLOC_COALESCED) 11171d2f33c5SMatthew G. Knepley #define PetscMalloc7(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5,m6,r6,m7,r7) (PetscMalloc1((m1),(r1)) || PetscMalloc1((m2),(r2)) || PetscMalloc1((m3),(r3)) || PetscMalloc1((m4),(r4)) || PetscMalloc1((m5),(r5)) || PetscMalloc1((m6),(r6)) || PetscMalloc1((m7),(r7))) 1118d382aafbSBarry Smith #else 1119dcca6d9dSJed Brown #define PetscMalloc7(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5,m6,r6,m7,r7) \ 1120ceba6b73SMatthew G. Knepley ((((m1)+(m2)+(m3)+(m4)+(m5)+(m6)+(m7)) ? (*(r2) = 0, *(r3) = 0, *(r4) = 0,*(r5) = 0,*(r6) = 0,*(r7) = 0,PetscMalloc((m1)*sizeof(**(r1))+(m2)*sizeof(**(r2))+(m3)*sizeof(**(r3))+(m4)*sizeof(**(r4))+(m5)*sizeof(**(r5))+(m6)*sizeof(**(r6))+(m7)*sizeof(**(r7))+6*(PETSC_MEMALIGN-1),r1)) : 0) \ 1121278791cbSMatthew G. Knepley || (*(void**)(r2) = PetscAddrAlign(*(r1)+(m1)),*(void**)(r3) = PetscAddrAlign(*(r2)+(m2)),*(void**)(r4) = PetscAddrAlign(*(r3)+(m3)),*(void**)(r5) = PetscAddrAlign(*(r4)+(m4)),*(void**)(r6) = PetscAddrAlign(*(r5)+(m5)),*(void**)(r7) = PetscAddrAlign(*(r6)+(m6)),0) \ 112201b1da61SJed Brown || (0==(m1) ? (*(r1) = 0,0) : 0) || (0==(m2) ? (*(r2) = 0,0) : 0) || (0==(m3) ? (*(r3) = 0,0) : 0) || (0==(m4) ? (*(r4) = 0,0) : 0) || (0==(m5) ? (*(r5) = 0,0) : 0) || (0==(m6) ? (*(r6) = 0,0) : 0) || (0==(m7) ? (*(r7) = 0,0) : 0)) 1123d382aafbSBarry Smith #endif 1124d382aafbSBarry Smith 1125d382aafbSBarry Smith /*MC 11261795a4d1SJed Brown PetscCalloc7 - Allocates 7 cleared (zeroed) arrays of memory, all aligned to PETSC_MEMALIGN 11271795a4d1SJed Brown 11281795a4d1SJed Brown Synopsis: 1129aaa7dc30SBarry Smith #include <petscsys.h> 11301795a4d1SJed Brown PetscErrorCode PetscCalloc7(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3,size_t m4,type **r4,size_t m5,type **r5,size_t m6,type **r6,size_t m7,type **r7) 11311795a4d1SJed Brown 11321795a4d1SJed Brown Not Collective 11331795a4d1SJed Brown 1134e28ce29aSPatrick Sanan Input Parameters: 11351795a4d1SJed Brown + m1 - number of elements to allocate in 1st chunk (may be zero) 11361795a4d1SJed Brown . m2 - number of elements to allocate in 2nd chunk (may be zero) 11371795a4d1SJed Brown . m3 - number of elements to allocate in 3rd chunk (may be zero) 11381795a4d1SJed Brown . m4 - number of elements to allocate in 4th chunk (may be zero) 11391795a4d1SJed Brown . m5 - number of elements to allocate in 5th chunk (may be zero) 11401795a4d1SJed Brown . m6 - number of elements to allocate in 6th chunk (may be zero) 11411795a4d1SJed Brown - m7 - number of elements to allocate in 7th chunk (may be zero) 11421795a4d1SJed Brown 1143e28ce29aSPatrick Sanan Output Parameters: 11441795a4d1SJed Brown + r1 - memory allocated in first chunk 11451795a4d1SJed Brown . r2 - memory allocated in second chunk 11461795a4d1SJed Brown . r3 - memory allocated in third chunk 11471795a4d1SJed Brown . r4 - memory allocated in fourth chunk 11481795a4d1SJed Brown . r5 - memory allocated in fifth chunk 11491795a4d1SJed Brown . r6 - memory allocated in sixth chunk 11501795a4d1SJed Brown - r7 - memory allocated in seventh chunk 11511795a4d1SJed Brown 11521795a4d1SJed Brown Level: developer 11531795a4d1SJed Brown 11541795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscMalloc7(), PetscFree7() 11551795a4d1SJed Brown 11561795a4d1SJed Brown Concepts: memory allocation 11571795a4d1SJed Brown M*/ 11581795a4d1SJed Brown #define PetscCalloc7(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5,m6,r6,m7,r7) \ 11597ba0cc92SJed Brown (PetscMalloc7(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5,m6,r6,m7,r7) \ 11601795a4d1SJed Brown || PetscMemzero(*(r1),(m1)*sizeof(**(r1))) || PetscMemzero(*(r2),(m2)*sizeof(**(r2))) || PetscMemzero(*(r3),(m3)*sizeof(**(r3))) \ 11611795a4d1SJed Brown || PetscMemzero(*(r4),(m4)*sizeof(**(r4))) || PetscMemzero(*(r5),(m5)*sizeof(**(r5))) || PetscMemzero(*(r6),(m6)*sizeof(**(r6))) \ 11627ba0cc92SJed Brown || PetscMemzero(*(r7),(m7)*sizeof(**(r7)))) 11631795a4d1SJed Brown 11641795a4d1SJed Brown /*MC 1165503cfb0cSBarry Smith PetscNew - Allocates memory of a particular type, zeros the memory! Aligned to PETSC_MEMALIGN 1166d382aafbSBarry Smith 1167eca87e8dSBarry Smith Synopsis: 1168aaa7dc30SBarry Smith #include <petscsys.h> 1169b00a9115SJed Brown PetscErrorCode PetscNew(type **result) 1170eca87e8dSBarry Smith 1171eca87e8dSBarry Smith Not Collective 1172eca87e8dSBarry Smith 1173d382aafbSBarry Smith Output Parameter: 1174b00a9115SJed Brown . result - memory allocated, sized to match pointer type 1175d382aafbSBarry Smith 1176d382aafbSBarry Smith Level: beginner 1177d382aafbSBarry Smith 1178390e1bf2SBarry Smith .seealso: PetscFree(), PetscMalloc(), PetscNewLog(), PetscCalloc1(), PetscMalloc1() 1179d382aafbSBarry Smith 1180d382aafbSBarry Smith Concepts: memory allocation 1181d382aafbSBarry Smith 1182d382aafbSBarry Smith M*/ 1183b00a9115SJed Brown #define PetscNew(b) PetscCalloc1(1,(b)) 1184ad0619ddSBarry Smith 1185ad0619ddSBarry Smith /*MC 1186b00a9115SJed Brown PetscNewLog - Allocates memory of a type matching pointer, zeros the memory! Aligned to PETSC_MEMALIGN. Associates the memory allocated 1187ad0619ddSBarry Smith with the given object using PetscLogObjectMemory(). 1188ad0619ddSBarry Smith 1189ad0619ddSBarry Smith Synopsis: 1190aaa7dc30SBarry Smith #include <petscsys.h> 1191b00a9115SJed Brown PetscErrorCode PetscNewLog(PetscObject obj,type **result) 1192ad0619ddSBarry Smith 1193ad0619ddSBarry Smith Not Collective 1194ad0619ddSBarry Smith 1195ad0619ddSBarry Smith Input Parameter: 1196b00a9115SJed Brown . obj - object memory is logged to 1197ad0619ddSBarry Smith 1198ad0619ddSBarry Smith Output Parameter: 1199b00a9115SJed Brown . result - memory allocated, sized to match pointer type 1200ad0619ddSBarry Smith 1201ad0619ddSBarry Smith Level: developer 1202ad0619ddSBarry Smith 1203390e1bf2SBarry Smith .seealso: PetscFree(), PetscMalloc(), PetscNew(), PetscLogObjectMemory(), PetscCalloc1(), PetscMalloc1() 1204ad0619ddSBarry Smith 1205ad0619ddSBarry Smith Concepts: memory allocation 1206ad0619ddSBarry Smith 1207ad0619ddSBarry Smith M*/ 1208d12f57a0SLisandro Dalcin #define PetscNewLog(o,b) (PetscNew((b)) || PetscLogObjectMemory((PetscObject)o,sizeof(**(b)))) 1209d382aafbSBarry Smith 1210d382aafbSBarry Smith /*MC 1211d382aafbSBarry Smith PetscFree - Frees memory 1212d382aafbSBarry Smith 1213eca87e8dSBarry Smith Synopsis: 1214aaa7dc30SBarry Smith #include <petscsys.h> 1215eca87e8dSBarry Smith PetscErrorCode PetscFree(void *memory) 1216eca87e8dSBarry Smith 1217eca87e8dSBarry Smith Not Collective 1218eca87e8dSBarry Smith 1219d382aafbSBarry Smith Input Parameter: 1220390e1bf2SBarry Smith . memory - memory to free (the pointer is ALWAYS set to NULL upon sucess) 1221d382aafbSBarry Smith 1222d382aafbSBarry Smith Level: beginner 1223d382aafbSBarry Smith 122449d7da52SJed Brown Notes: 1225390e1bf2SBarry Smith Do not free memory obtained with PetscMalloc2(), PetscCalloc2() etc, they must be freed with PetscFree2() etc. 1226390e1bf2SBarry Smith 122749d7da52SJed Brown It is safe to call PetscFree() on a NULL pointer. 1228d382aafbSBarry Smith 1229390e1bf2SBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscNewLog(), PetscMalloc1(), PetscCalloc1() 1230d382aafbSBarry Smith 1231d382aafbSBarry Smith Concepts: memory allocation 1232d382aafbSBarry Smith 1233d382aafbSBarry Smith M*/ 123449d7da52SJed Brown #define PetscFree(a) ((*PetscTrFree)((void*)(a),__LINE__,PETSC_FUNCTION_NAME,__FILE__) || ((a) = 0,0)) 1235d382aafbSBarry Smith 1236d382aafbSBarry Smith /*MC 1237d382aafbSBarry Smith PetscFree2 - Frees 2 chunks of memory obtained with PetscMalloc2() 1238d382aafbSBarry Smith 1239eca87e8dSBarry Smith Synopsis: 1240aaa7dc30SBarry Smith #include <petscsys.h> 1241eca87e8dSBarry Smith PetscErrorCode PetscFree2(void *memory1,void *memory2) 1242eca87e8dSBarry Smith 1243eca87e8dSBarry Smith Not Collective 1244eca87e8dSBarry Smith 1245e28ce29aSPatrick Sanan Input Parameters: 1246d382aafbSBarry Smith + memory1 - memory to free 1247d382aafbSBarry Smith - memory2 - 2nd memory to free 1248d382aafbSBarry Smith 1249d382aafbSBarry Smith Level: developer 1250d382aafbSBarry Smith 1251d382aafbSBarry Smith Notes: Memory must have been obtained with PetscMalloc2() 1252d382aafbSBarry Smith 1253d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree() 1254d382aafbSBarry Smith 1255d382aafbSBarry Smith Concepts: memory allocation 1256d382aafbSBarry Smith 1257d382aafbSBarry Smith M*/ 1258b4cc1d85SMatthew G. Knepley #if !defined(PETSC_USE_MALLOC_COALESCED) 1259d382aafbSBarry Smith #define PetscFree2(m1,m2) (PetscFree(m2) || PetscFree(m1)) 1260d382aafbSBarry Smith #else 1261e38f91f2SMatthew G. Knepley #define PetscFree2(m1,m2) ((m1) ? ((m2)=0,PetscFree(m1)) : ((m1)=0,PetscFree(m2))) 1262d382aafbSBarry Smith #endif 1263d382aafbSBarry Smith 1264d382aafbSBarry Smith /*MC 1265d382aafbSBarry Smith PetscFree3 - Frees 3 chunks of memory obtained with PetscMalloc3() 1266d382aafbSBarry Smith 1267eca87e8dSBarry Smith Synopsis: 1268aaa7dc30SBarry Smith #include <petscsys.h> 1269eca87e8dSBarry Smith PetscErrorCode PetscFree3(void *memory1,void *memory2,void *memory3) 1270eca87e8dSBarry Smith 1271eca87e8dSBarry Smith Not Collective 1272eca87e8dSBarry Smith 1273e28ce29aSPatrick Sanan Input Parameters: 1274d382aafbSBarry Smith + memory1 - memory to free 1275d382aafbSBarry Smith . memory2 - 2nd memory to free 1276d382aafbSBarry Smith - memory3 - 3rd memory to free 1277d382aafbSBarry Smith 1278d382aafbSBarry Smith Level: developer 1279d382aafbSBarry Smith 1280d382aafbSBarry Smith Notes: Memory must have been obtained with PetscMalloc3() 1281d382aafbSBarry Smith 1282d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree(), PetscMalloc3() 1283d382aafbSBarry Smith 1284d382aafbSBarry Smith Concepts: memory allocation 1285d382aafbSBarry Smith 1286d382aafbSBarry Smith M*/ 1287b4cc1d85SMatthew G. Knepley #if !defined(PETSC_USE_MALLOC_COALESCED) 1288d382aafbSBarry Smith #define PetscFree3(m1,m2,m3) (PetscFree(m3) || PetscFree(m2) || PetscFree(m1)) 1289d382aafbSBarry Smith #else 1290e38f91f2SMatthew G. Knepley #define PetscFree3(m1,m2,m3) ((m1) ? ((m3)=0,(m2)=0,PetscFree(m1)) : ((m2) ? ((m3)=0,(m1)=0,PetscFree(m2)) : ((m2)=0,(m1)=0,PetscFree(m3)))) 1291d382aafbSBarry Smith #endif 1292d382aafbSBarry Smith 1293d382aafbSBarry Smith /*MC 1294d382aafbSBarry Smith PetscFree4 - Frees 4 chunks of memory obtained with PetscMalloc4() 1295d382aafbSBarry Smith 1296eca87e8dSBarry Smith Synopsis: 1297aaa7dc30SBarry Smith #include <petscsys.h> 1298eca87e8dSBarry Smith PetscErrorCode PetscFree4(void *m1,void *m2,void *m3,void *m4) 1299eca87e8dSBarry Smith 1300eca87e8dSBarry Smith Not Collective 1301eca87e8dSBarry Smith 1302e28ce29aSPatrick Sanan Input Parameters: 1303d382aafbSBarry Smith + m1 - memory to free 1304d382aafbSBarry Smith . m2 - 2nd memory to free 1305d382aafbSBarry Smith . m3 - 3rd memory to free 1306d382aafbSBarry Smith - m4 - 4th memory to free 1307d382aafbSBarry Smith 1308d382aafbSBarry Smith Level: developer 1309d382aafbSBarry Smith 1310d382aafbSBarry Smith Notes: Memory must have been obtained with PetscMalloc4() 1311d382aafbSBarry Smith 1312d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree(), PetscMalloc3(), PetscMalloc4() 1313d382aafbSBarry Smith 1314d382aafbSBarry Smith Concepts: memory allocation 1315d382aafbSBarry Smith 1316d382aafbSBarry Smith M*/ 1317b4cc1d85SMatthew G. Knepley #if !defined(PETSC_USE_MALLOC_COALESCED) 1318d382aafbSBarry Smith #define PetscFree4(m1,m2,m3,m4) (PetscFree(m4) || PetscFree(m3) || PetscFree(m2) || PetscFree(m1)) 1319d382aafbSBarry Smith #else 1320e38f91f2SMatthew G. Knepley #define PetscFree4(m1,m2,m3,m4) ((m1) ? ((m4)=0,(m3)=0,(m2)=0,PetscFree(m1)) : ((m2) ? ((m4)=0,(m3)=0,(m1)=0,PetscFree(m2)) : ((m3) ? ((m4)=0,(m2)=0,(m1)=0,PetscFree(m3)) : ((m3)=0,(m2)=0,(m1)=0,PetscFree(m4))))) 1321d382aafbSBarry Smith #endif 1322d382aafbSBarry Smith 1323d382aafbSBarry Smith /*MC 1324d382aafbSBarry Smith PetscFree5 - Frees 5 chunks of memory obtained with PetscMalloc5() 1325d382aafbSBarry Smith 1326eca87e8dSBarry Smith Synopsis: 1327aaa7dc30SBarry Smith #include <petscsys.h> 1328eca87e8dSBarry Smith PetscErrorCode PetscFree5(void *m1,void *m2,void *m3,void *m4,void *m5) 1329eca87e8dSBarry Smith 1330eca87e8dSBarry Smith Not Collective 1331eca87e8dSBarry Smith 1332e28ce29aSPatrick Sanan Input Parameters: 1333d382aafbSBarry Smith + m1 - memory to free 1334d382aafbSBarry Smith . m2 - 2nd memory to free 1335d382aafbSBarry Smith . m3 - 3rd memory to free 1336d382aafbSBarry Smith . m4 - 4th memory to free 1337d382aafbSBarry Smith - m5 - 5th memory to free 1338d382aafbSBarry Smith 1339d382aafbSBarry Smith Level: developer 1340d382aafbSBarry Smith 1341d382aafbSBarry Smith Notes: Memory must have been obtained with PetscMalloc5() 1342d382aafbSBarry Smith 1343d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree(), PetscMalloc3(), PetscMalloc4(), PetscMalloc5() 1344d382aafbSBarry Smith 1345d382aafbSBarry Smith Concepts: memory allocation 1346d382aafbSBarry Smith 1347d382aafbSBarry Smith M*/ 1348b4cc1d85SMatthew G. Knepley #if !defined(PETSC_USE_MALLOC_COALESCED) 1349d382aafbSBarry Smith #define PetscFree5(m1,m2,m3,m4,m5) (PetscFree(m5) || PetscFree(m4) || PetscFree(m3) || PetscFree(m2) || PetscFree(m1)) 1350d382aafbSBarry Smith #else 1351e38f91f2SMatthew G. Knepley #define PetscFree5(m1,m2,m3,m4,m5) ((m1) ? ((m5)=0,(m4)=0,(m3)=0,(m2)=0,PetscFree(m1)) : ((m2) ? ((m5)=0,(m4)=0,(m3)=0,(m1)=0,PetscFree(m2)) : ((m3) ? ((m5)=0,(m4)=0,(m2)=0,(m1)=0,PetscFree(m3)) : \ 1352e38f91f2SMatthew G. Knepley ((m4) ? ((m5)=0,(m3)=0,(m2)=0,(m1)=0,PetscFree(m4)) : ((m4)=0,(m3)=0,(m2)=0,(m1)=0,PetscFree(m5)))))) 1353d382aafbSBarry Smith #endif 1354d382aafbSBarry Smith 1355d382aafbSBarry Smith 1356d382aafbSBarry Smith /*MC 1357d382aafbSBarry Smith PetscFree6 - Frees 6 chunks of memory obtained with PetscMalloc6() 1358d382aafbSBarry Smith 1359eca87e8dSBarry Smith Synopsis: 1360aaa7dc30SBarry Smith #include <petscsys.h> 1361eca87e8dSBarry Smith PetscErrorCode PetscFree6(void *m1,void *m2,void *m3,void *m4,void *m5,void *m6) 1362eca87e8dSBarry Smith 1363eca87e8dSBarry Smith Not Collective 1364eca87e8dSBarry Smith 1365e28ce29aSPatrick Sanan Input Parameters: 1366d382aafbSBarry Smith + m1 - memory to free 1367d382aafbSBarry Smith . m2 - 2nd memory to free 1368d382aafbSBarry Smith . m3 - 3rd memory to free 1369d382aafbSBarry Smith . m4 - 4th memory to free 1370d382aafbSBarry Smith . m5 - 5th memory to free 1371d382aafbSBarry Smith - m6 - 6th memory to free 1372d382aafbSBarry Smith 1373d382aafbSBarry Smith 1374d382aafbSBarry Smith Level: developer 1375d382aafbSBarry Smith 1376d382aafbSBarry Smith Notes: Memory must have been obtained with PetscMalloc6() 1377d382aafbSBarry Smith 1378d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree(), PetscMalloc3(), PetscMalloc4(), PetscMalloc5(), PetscMalloc6() 1379d382aafbSBarry Smith 1380d382aafbSBarry Smith Concepts: memory allocation 1381d382aafbSBarry Smith 1382d382aafbSBarry Smith M*/ 1383b4cc1d85SMatthew G. Knepley #if !defined(PETSC_USE_MALLOC_COALESCED) 1384d382aafbSBarry Smith #define PetscFree6(m1,m2,m3,m4,m5,m6) (PetscFree(m6) || PetscFree(m5) || PetscFree(m4) || PetscFree(m3) || PetscFree(m2) || PetscFree(m1)) 1385d382aafbSBarry Smith #else 1386e38f91f2SMatthew G. Knepley #define PetscFree6(m1,m2,m3,m4,m5,m6) ((m1) ? ((m6)=0,(m5)=0,(m4)=0,(m3)=0,(m2)=0,PetscFree(m1)) : ((m2) ? ((m6)=0,(m5)=0,(m4)=0,(m3)=0,(m1)=0,PetscFree(m2)) : \ 1387e38f91f2SMatthew G. Knepley ((m3) ? ((m6)=0,(m5)=0,(m4)=0,(m2)=0,(m1)=0,PetscFree(m3)) : ((m4) ? ((m6)=0,(m5)=0,(m3)=0,(m2)=0,(m1)=0,PetscFree(m4)) : \ 1388e38f91f2SMatthew G. Knepley ((m5) ? ((m6)=0,(m4)=0,(m3)=0,(m2)=0,(m1)=0,PetscFree(m5)) : ((m5)=0,(m4)=0,(m3)=0,(m2)=0,(m1)=0,PetscFree(m6))))))) 1389d382aafbSBarry Smith #endif 1390d382aafbSBarry Smith 1391d382aafbSBarry Smith /*MC 1392d382aafbSBarry Smith PetscFree7 - Frees 7 chunks of memory obtained with PetscMalloc7() 1393d382aafbSBarry Smith 1394eca87e8dSBarry Smith Synopsis: 1395aaa7dc30SBarry Smith #include <petscsys.h> 1396eca87e8dSBarry Smith PetscErrorCode PetscFree7(void *m1,void *m2,void *m3,void *m4,void *m5,void *m6,void *m7) 1397eca87e8dSBarry Smith 1398eca87e8dSBarry Smith Not Collective 1399eca87e8dSBarry Smith 1400e28ce29aSPatrick Sanan Input Parameters: 1401d382aafbSBarry Smith + m1 - memory to free 1402d382aafbSBarry Smith . m2 - 2nd memory to free 1403d382aafbSBarry Smith . m3 - 3rd memory to free 1404d382aafbSBarry Smith . m4 - 4th memory to free 1405d382aafbSBarry Smith . m5 - 5th memory to free 1406d382aafbSBarry Smith . m6 - 6th memory to free 1407d382aafbSBarry Smith - m7 - 7th memory to free 1408d382aafbSBarry Smith 1409d382aafbSBarry Smith 1410d382aafbSBarry Smith Level: developer 1411d382aafbSBarry Smith 1412d382aafbSBarry Smith Notes: Memory must have been obtained with PetscMalloc7() 1413d382aafbSBarry Smith 1414d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree(), PetscMalloc3(), PetscMalloc4(), PetscMalloc5(), PetscMalloc6(), 1415d382aafbSBarry Smith PetscMalloc7() 1416d382aafbSBarry Smith 1417d382aafbSBarry Smith Concepts: memory allocation 1418d382aafbSBarry Smith 1419d382aafbSBarry Smith M*/ 1420b4cc1d85SMatthew G. Knepley #if !defined(PETSC_USE_MALLOC_COALESCED) 1421d382aafbSBarry Smith #define PetscFree7(m1,m2,m3,m4,m5,m6,m7) (PetscFree(m7) || PetscFree(m6) || PetscFree(m5) || PetscFree(m4) || PetscFree(m3) || PetscFree(m2) || PetscFree(m1)) 1422d382aafbSBarry Smith #else 1423e38f91f2SMatthew G. Knepley #define PetscFree7(m1,m2,m3,m4,m5,m6,m7) ((m1) ? ((m7)=0,(m6)=0,(m5)=0,(m4)=0,(m3)=0,(m2)=0,PetscFree(m1)) : ((m2) ? ((m7)=0,(m6)=0,(m5)=0,(m4)=0,(m3)=0,(m1)=0,PetscFree(m2)) : \ 1424e38f91f2SMatthew G. Knepley ((m3) ? ((m7)=0,(m6)=0,(m5)=0,(m4)=0,(m2)=0,(m1)=0,PetscFree(m3)) : ((m4) ? ((m7)=0,(m6)=0,(m5)=0,(m3)=0,(m2)=0,(m1)=0,PetscFree(m4)) : \ 142506c0a5e5SMatthew G. Knepley ((m5) ? ((m7)=0,(m6)=0,(m4)=0,(m3)=0,(m2)=0,(m1)=0,PetscFree(m5)) : ((m6) ? ((m7)=0,(m5)=0,(m4)=0,(m3)=0,(m2)=0,(m1)=0,PetscFree(m6)) : \ 1426e38f91f2SMatthew G. Knepley ((m6)=0,(m5)=0,(m4)=0,(m3)=0,(m2)=0,(m1)=0,PetscFree(m7)))))))) 1427d382aafbSBarry Smith #endif 1428d382aafbSBarry Smith 1429efca3c55SSatish Balay PETSC_EXTERN PetscErrorCode (*PetscTrMalloc)(size_t,int,const char[],const char[],void**); 1430efca3c55SSatish Balay PETSC_EXTERN PetscErrorCode (*PetscTrFree)(void*,int,const char[],const char[]); 14313221ece2SMatthew G. Knepley PETSC_EXTERN PetscErrorCode (*PetscTrRealloc)(size_t,int,const char[],const char[],void**); 1432efca3c55SSatish Balay PETSC_EXTERN PetscErrorCode PetscMallocSet(PetscErrorCode (*)(size_t,int,const char[],const char[],void**),PetscErrorCode (*)(void*,int,const char[],const char[])); 1433014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocClear(void); 1434d382aafbSBarry Smith 1435d382aafbSBarry Smith /* 1436c1706be6SHong Zhang Unlike PetscMallocSet and PetscMallocClear which overwrite the existing settings, these two functions save the previous choice of allocator, and should be used in pair. 1437c1706be6SHong Zhang */ 1438c1706be6SHong Zhang PETSC_EXTERN PetscErrorCode PetscMallocSetDRAM(void); 1439c1706be6SHong Zhang PETSC_EXTERN PetscErrorCode PetscMallocResetDRAM(void); 1440c1706be6SHong Zhang 1441c1706be6SHong Zhang /* 1442a5057860SBarry Smith PetscLogDouble variables are used to contain double precision numbers 1443a5057860SBarry Smith that are not used in the numerical computations, but rather in logging, 1444a5057860SBarry Smith timing etc. 1445a5057860SBarry Smith */ 1446a5057860SBarry Smith typedef double PetscLogDouble; 1447a5057860SBarry Smith #define MPIU_PETSCLOGDOUBLE MPI_DOUBLE 1448a5057860SBarry Smith 1449a5057860SBarry Smith /* 145066d669d6SBarry Smith Routines for tracing memory corruption/bleeding with default PETSc memory allocation 1451d382aafbSBarry Smith */ 1452014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocDump(FILE *); 1453014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocDumpLog(FILE *); 1454014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocGetCurrentUsage(PetscLogDouble *); 1455014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocGetMaximumUsage(PetscLogDouble *); 1456014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocDebug(PetscBool); 14570acecf5bSBarry Smith PETSC_EXTERN PetscErrorCode PetscMallocGetDebug(PetscBool*); 1458efca3c55SSatish Balay PETSC_EXTERN PetscErrorCode PetscMallocValidate(int,const char[],const char[]); 1459014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocSetDumpLog(void); 1460574034a9SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocSetDumpLogThreshold(PetscLogDouble); 1461014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocGetDumpLog(PetscBool*); 1462d382aafbSBarry Smith 1463d382aafbSBarry Smith /*E 1464d382aafbSBarry Smith PetscDataType - Used for handling different basic data types. 1465d382aafbSBarry Smith 1466d382aafbSBarry Smith Level: beginner 1467d382aafbSBarry Smith 1468e28ce29aSPatrick Sanan Developer comment: 1469e28ce29aSPatrick Sanan It would be nice if we could always just use MPI Datatypes, why can we not? 1470d382aafbSBarry Smith 1471d382aafbSBarry Smith .seealso: PetscBinaryRead(), PetscBinaryWrite(), PetscDataTypeToMPIDataType(), 1472d382aafbSBarry Smith PetscDataTypeGetSize() 1473d382aafbSBarry Smith 1474d382aafbSBarry Smith E*/ 1475d382aafbSBarry Smith typedef enum {PETSC_INT = 0,PETSC_DOUBLE = 1,PETSC_COMPLEX = 2, PETSC_LONG = 3 ,PETSC_SHORT = 4,PETSC_FLOAT = 5, 1476570b7f6dSBarry Smith PETSC_CHAR = 6,PETSC_BIT_LOGICAL = 7,PETSC_ENUM = 8,PETSC_BOOL=9, PETSC___FLOAT128 = 10,PETSC_OBJECT = 11, PETSC_FUNCTION = 12, PETSC_STRING = 13, PETSC___FP16 = 14,PETSC_STRUCT, PETSC_DATATYPE_UNKNOWN} PetscDataType; 14776a6fc655SJed Brown PETSC_EXTERN const char *const PetscDataTypes[]; 1478d382aafbSBarry Smith 1479d382aafbSBarry Smith #if defined(PETSC_USE_COMPLEX) 1480d382aafbSBarry Smith #define PETSC_SCALAR PETSC_COMPLEX 1481d382aafbSBarry Smith #else 1482ce63c4c1SBarry Smith #if defined(PETSC_USE_REAL_SINGLE) 1483d382aafbSBarry Smith #define PETSC_SCALAR PETSC_FLOAT 148459a34000SBarry Smith #elif defined(PETSC_USE_REAL___FLOAT128) 148559a34000SBarry Smith #define PETSC_SCALAR PETSC___FLOAT128 1486570b7f6dSBarry Smith #elif defined(PETSC_USE_REAL___FP16) 1487570b7f6dSBarry Smith #define PETSC_SCALAR PETSC___FP16 1488d382aafbSBarry Smith #else 1489d382aafbSBarry Smith #define PETSC_SCALAR PETSC_DOUBLE 1490d382aafbSBarry Smith #endif 1491d382aafbSBarry Smith #endif 1492ce63c4c1SBarry Smith #if defined(PETSC_USE_REAL_SINGLE) 1493d382aafbSBarry Smith #define PETSC_REAL PETSC_FLOAT 149459a34000SBarry Smith #elif defined(PETSC_USE_REAL___FLOAT128) 149559a34000SBarry Smith #define PETSC_REAL PETSC___FLOAT128 1496570b7f6dSBarry Smith #elif defined(PETSC_USE_REAL___FP16) 1497570b7f6dSBarry Smith #define PETSC_REAL PETSC___FP16 1498d382aafbSBarry Smith #else 1499d382aafbSBarry Smith #define PETSC_REAL PETSC_DOUBLE 1500d382aafbSBarry Smith #endif 1501d382aafbSBarry Smith #define PETSC_FORTRANADDR PETSC_LONG 1502d382aafbSBarry Smith 1503014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDataTypeToMPIDataType(PetscDataType,MPI_Datatype*); 1504014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMPIDataTypeToPetscDataType(MPI_Datatype,PetscDataType*); 1505014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDataTypeGetSize(PetscDataType,size_t*); 15068e4b2d1dSBarry Smith PETSC_EXTERN PetscErrorCode PetscDataTypeFromString(const char*,PetscDataType*,PetscBool*); 1507d382aafbSBarry Smith 1508d382aafbSBarry Smith /* 1509d382aafbSBarry Smith Basic memory and string operations. These are usually simple wrappers 1510d382aafbSBarry Smith around the basic Unix system calls, but a few of them have additional 1511d382aafbSBarry Smith functionality and/or error checking. 1512d382aafbSBarry Smith */ 1513014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBitMemcpy(void*,PetscInt,const void*,PetscInt,PetscInt,PetscDataType); 1514014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMemmove(void*,void *,size_t); 1515014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMemcmp(const void*,const void*,size_t,PetscBool *); 1516014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrlen(const char[],size_t*); 1517d67fe73bSBarry Smith PETSC_EXTERN PetscErrorCode PetscStrToArray(const char[],char,int*,char ***); 1518014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrToArrayDestroy(int,char **); 1519014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrcmp(const char[],const char[],PetscBool *); 1520014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrgrt(const char[],const char[],PetscBool *); 1521014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrcasecmp(const char[],const char[],PetscBool *); 1522014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrncmp(const char[],const char[],size_t,PetscBool *); 1523014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrcpy(char[],const char[]); 1524014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrcat(char[],const char[]); 1525014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrncat(char[],const char[],size_t); 1526014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrncpy(char[],const char[],size_t); 1527014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrchr(const char[],char,char *[]); 1528014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrtolower(char[]); 15292f234a98SBarry Smith PETSC_EXTERN PetscErrorCode PetscStrtoupper(char[]); 1530014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrrchr(const char[],char,char *[]); 1531014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrstr(const char[],const char[],char *[]); 1532014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrrstr(const char[],const char[],char *[]); 1533014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrendswith(const char[],const char[],PetscBool*); 15342c9581d2SBarry Smith PETSC_EXTERN PetscErrorCode PetscStrbeginswith(const char[],const char[],PetscBool*); 1535014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrendswithwhich(const char[],const char *const*,PetscInt*); 1536014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrallocpy(const char[],char *[]); 153747340559SBarry Smith PETSC_EXTERN PetscErrorCode PetscStrArrayallocpy(const char *const*,char***); 15386fed8037SJed Brown PETSC_EXTERN PetscErrorCode PetscStrArrayDestroy(char***); 15396991f827SBarry Smith PETSC_EXTERN PetscErrorCode PetscStrNArrayallocpy(PetscInt,const char *const*,char***); 15406991f827SBarry Smith PETSC_EXTERN PetscErrorCode PetscStrNArrayDestroy(PetscInt,char***); 1541014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrreplace(MPI_Comm,const char[],char[],size_t); 1542d382aafbSBarry Smith 1543573b0fb4SBarry Smith PETSC_EXTERN void PetscStrcmpNoError(const char[],const char[],PetscBool *); 1544573b0fb4SBarry Smith 1545d382aafbSBarry Smith /*S 1546d382aafbSBarry Smith PetscToken - 'Token' used for managing tokenizing strings 1547d382aafbSBarry Smith 1548d382aafbSBarry Smith Level: intermediate 1549d382aafbSBarry Smith 1550d382aafbSBarry Smith .seealso: PetscTokenCreate(), PetscTokenFind(), PetscTokenDestroy() 1551d382aafbSBarry Smith S*/ 1552d382aafbSBarry Smith typedef struct _p_PetscToken* PetscToken; 1553d382aafbSBarry Smith 1554014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscTokenCreate(const char[],const char,PetscToken*); 1555014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscTokenFind(PetscToken,char *[]); 1556014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscTokenDestroy(PetscToken*); 1557d382aafbSBarry Smith 1558a53986e1SJed Brown PETSC_EXTERN PetscErrorCode PetscEListFind(PetscInt,const char *const*,const char*,PetscInt*,PetscBool*); 1559a53986e1SJed Brown PETSC_EXTERN PetscErrorCode PetscEnumFind(const char *const*,const char*,PetscEnum*,PetscBool*); 1560a53986e1SJed Brown 1561d382aafbSBarry Smith /* 1562d382aafbSBarry Smith These are MPI operations for MPI_Allreduce() etc 1563d382aafbSBarry Smith */ 1564367daffbSBarry Smith PETSC_EXTERN MPI_Op MPIU_MAXSUM_OP; 1565570b7f6dSBarry Smith #if (defined(PETSC_HAVE_COMPLEX) && !defined(PETSC_HAVE_MPI_C_DOUBLE_COMPLEX)) || defined(PETSC_USE_REAL___FLOAT128) || defined(PETSC_USE_REAL___FP16) 1566014dd563SJed Brown PETSC_EXTERN MPI_Op MPIU_SUM; 15672414b3c7SJed Brown #else 15682414b3c7SJed Brown #define MPIU_SUM MPI_SUM 15692414b3c7SJed Brown #endif 1570570b7f6dSBarry Smith #if defined(PETSC_USE_REAL___FLOAT128) || defined(PETSC_USE_REAL___FP16) 1571014dd563SJed Brown PETSC_EXTERN MPI_Op MPIU_MAX; 1572014dd563SJed Brown PETSC_EXTERN MPI_Op MPIU_MIN; 1573d9822059SBarry Smith #else 1574d9822059SBarry Smith #define MPIU_MAX MPI_MAX 1575d9822059SBarry Smith #define MPIU_MIN MPI_MIN 1576d9822059SBarry Smith #endif 1577014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMaxSum(MPI_Comm,const PetscInt[],PetscInt*,PetscInt*); 1578d382aafbSBarry Smith 1579014dd563SJed Brown PETSC_EXTERN PetscErrorCode MPIULong_Send(void*,PetscInt,MPI_Datatype,PetscMPIInt,PetscMPIInt,MPI_Comm); 1580014dd563SJed Brown PETSC_EXTERN PetscErrorCode MPIULong_Recv(void*,PetscInt,MPI_Datatype,PetscMPIInt,PetscMPIInt,MPI_Comm); 1581eb3f98d2SBarry Smith 1582d382aafbSBarry Smith /*S 1583d382aafbSBarry Smith PetscObject - any PETSc object, PetscViewer, Mat, Vec, KSP etc 1584d382aafbSBarry Smith 1585d382aafbSBarry Smith Level: beginner 1586d382aafbSBarry Smith 1587e28ce29aSPatrick Sanan Note: 1588e28ce29aSPatrick Sanan This is the base class from which all PETSc objects are derived from. 1589d382aafbSBarry Smith 15902b26979fSBarry Smith .seealso: PetscObjectDestroy(), PetscObjectView(), PetscObjectGetName(), PetscObjectSetName(), PetscObjectReference(), PetscObjectDereference() 1591d382aafbSBarry Smith S*/ 1592d382aafbSBarry Smith typedef struct _p_PetscObject* PetscObject; 1593d382aafbSBarry Smith 1594270bf2e7SJed Brown /*MC 1595127c8a3bSJed Brown PetscObjectId - unique integer Id for a PetscObject 1596127c8a3bSJed Brown 1597127c8a3bSJed Brown Level: developer 1598127c8a3bSJed Brown 1599e28ce29aSPatrick Sanan Notes: 1600e28ce29aSPatrick Sanan Unlike pointer values, object ids are never reused. 1601127c8a3bSJed Brown 1602127c8a3bSJed Brown .seealso: PetscObjectState, PetscObjectGetId() 1603127c8a3bSJed Brown M*/ 160406e41213SSatish Balay #if defined(PETSC_USING_F90) && !defined(PETSC_USE_FORTRANKIND) /* compaq F90 */ 160506e41213SSatish Balay typedef int PetscObjectId; 160606e41213SSatish Balay #else 1607bafee8b4SSatish Balay typedef PetscInt64 PetscObjectId; 160806e41213SSatish Balay #endif 1609127c8a3bSJed Brown 1610127c8a3bSJed Brown /*MC 1611270bf2e7SJed Brown PetscObjectState - integer state for a PetscObject 1612270bf2e7SJed Brown 1613270bf2e7SJed Brown Level: developer 1614270bf2e7SJed Brown 1615270bf2e7SJed Brown Notes: 1616270bf2e7SJed Brown Object state is always-increasing and (for objects that track state) can be used to determine if an object has 1617270bf2e7SJed Brown changed since the last time you interacted with it. It is 64-bit so that it will not overflow for a very long time. 1618270bf2e7SJed Brown 16198dcff661SJed Brown .seealso: PetscObjectId, PetscObjectStateGet(), PetscObjectStateIncrease(), PetscObjectStateSet() 1620270bf2e7SJed Brown M*/ 162106e41213SSatish Balay #if defined(PETSC_USING_F90) && !defined(PETSC_USE_FORTRANKIND) /* compaq F90 */ 162206e41213SSatish Balay typedef int PetscObjectState; 162306e41213SSatish Balay #else 1624bafee8b4SSatish Balay typedef PetscInt64 PetscObjectState; 162506e41213SSatish Balay #endif 1626270bf2e7SJed Brown 1627d382aafbSBarry Smith /*S 1628140e18c1SBarry Smith PetscFunctionList - Linked list of functions, possibly stored in dynamic libraries, accessed 1629d382aafbSBarry Smith by string name 1630d382aafbSBarry Smith 1631d382aafbSBarry Smith Level: advanced 1632d382aafbSBarry Smith 1633140e18c1SBarry Smith .seealso: PetscFunctionListAdd(), PetscFunctionListDestroy(), PetscOpFlist 1634d382aafbSBarry Smith S*/ 1635140e18c1SBarry Smith typedef struct _n_PetscFunctionList *PetscFunctionList; 1636d382aafbSBarry Smith 1637d382aafbSBarry Smith /*E 1638d382aafbSBarry Smith PetscFileMode - Access mode for a file. 1639d382aafbSBarry Smith 1640d382aafbSBarry Smith Level: beginner 1641d382aafbSBarry Smith 16421cc8b206SBarry Smith $ FILE_MODE_READ - open a file at its beginning for reading 16431cc8b206SBarry Smith $ FILE_MODE_WRITE - open a file at its beginning for writing (will create if the file does not exist) 16441cc8b206SBarry Smith $ FILE_MODE_APPEND - open a file at end for writing 16451cc8b206SBarry Smith $ FILE_MODE_UPDATE - open a file for updating, meaning for reading and writing 16461cc8b206SBarry Smith $ FILE_MODE_APPEND_UPDATE - open a file for updating, meaning for reading and writing, at the end 1647d382aafbSBarry Smith 1648d382aafbSBarry Smith .seealso: PetscViewerFileSetMode() 1649d382aafbSBarry Smith E*/ 1650d382aafbSBarry Smith typedef enum {FILE_MODE_READ, FILE_MODE_WRITE, FILE_MODE_APPEND, FILE_MODE_UPDATE, FILE_MODE_APPEND_UPDATE} PetscFileMode; 1651d6a4318aSJed Brown extern const char *const PetscFileModes[]; 1652d6a4318aSJed Brown 1653639ff905SBarry Smith /* 1654639ff905SBarry Smith Defines PETSc error handling. 1655639ff905SBarry Smith */ 1656639ff905SBarry Smith #include <petscerror.h> 1657d382aafbSBarry Smith 16580700a824SBarry Smith #define PETSC_SMALLEST_CLASSID 1211211 1659014dd563SJed Brown PETSC_EXTERN PetscClassId PETSC_LARGEST_CLASSID; 1660014dd563SJed Brown PETSC_EXTERN PetscClassId PETSC_OBJECT_CLASSID; 1661014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscClassIdRegister(const char[],PetscClassId *); 1662d382aafbSBarry Smith 1663d382aafbSBarry Smith /* 1664d382aafbSBarry Smith Routines that get memory usage information from the OS 1665d382aafbSBarry Smith */ 1666014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMemoryGetCurrentUsage(PetscLogDouble *); 1667014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMemoryGetMaximumUsage(PetscLogDouble *); 1668014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMemorySetGetMaximumUsage(void); 1669b44d5720SBarry Smith PETSC_EXTERN PetscErrorCode PetscMemoryTrace(const char[]); 1670d382aafbSBarry Smith 1671014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscInfoAllow(PetscBool ,const char []); 1672014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSleep(PetscReal); 1673d382aafbSBarry Smith 1674d382aafbSBarry Smith /* 1675d382aafbSBarry Smith Initialization of PETSc 1676d382aafbSBarry Smith */ 1677014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscInitialize(int*,char***,const char[],const char[]); 1678014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscInitializeNoPointers(int,char**,const char[],const char[]); 1679014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscInitializeNoArguments(void); 1680014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscInitialized(PetscBool *); 1681014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFinalized(PetscBool *); 1682014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFinalize(void); 1683014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscInitializeFortran(void); 1684014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetArgs(int*,char ***); 1685014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetArguments(char ***); 1686014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFreeArguments(char **); 1687d382aafbSBarry Smith 1688014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscEnd(void); 1689607a6623SBarry Smith PETSC_EXTERN PetscErrorCode PetscSysInitializePackage(void); 1690d382aafbSBarry Smith 1691014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPythonInitialize(const char[],const char[]); 1692014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPythonFinalize(void); 1693014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPythonPrintError(void); 1694014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPythonMonitorSet(PetscObject,const char[]); 1695d382aafbSBarry Smith 1696d382aafbSBarry Smith /* 1697d382aafbSBarry Smith These are so that in extern C code we can caste function pointers to non-extern C 16982981ebdbSBarry Smith function pointers. Since the regular C++ code expects its function pointers to be C++ 1699d382aafbSBarry Smith */ 1700638cfed1SJed Brown PETSC_EXTERN_TYPEDEF typedef void (**PetscVoidStarFunction)(void); 1701638cfed1SJed Brown PETSC_EXTERN_TYPEDEF typedef void (*PetscVoidFunction)(void); 1702638cfed1SJed Brown PETSC_EXTERN_TYPEDEF typedef PetscErrorCode (*PetscErrorCodeFunction)(void); 1703d382aafbSBarry Smith 1704d382aafbSBarry Smith /* 1705d382aafbSBarry Smith Functions that can act on any PETSc object. 1706d382aafbSBarry Smith */ 1707014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectDestroy(PetscObject*); 1708014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetComm(PetscObject,MPI_Comm *); 1709014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetClassId(PetscObject,PetscClassId *); 1710014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetClassName(PetscObject,const char *[]); 1711014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectSetType(PetscObject,const char []); 1712014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetType(PetscObject,const char *[]); 1713014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectSetName(PetscObject,const char[]); 1714014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetName(PetscObject,const char*[]); 1715014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectSetTabLevel(PetscObject,PetscInt); 1716014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetTabLevel(PetscObject,PetscInt*); 1717014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectIncrementTabLevel(PetscObject,PetscObject,PetscInt); 1718014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectReference(PetscObject); 1719014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetReference(PetscObject,PetscInt*); 1720014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectDereference(PetscObject); 1721014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetNewTag(PetscObject,PetscMPIInt *); 1722014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectCompose(PetscObject,const char[],PetscObject); 1723014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectRemoveReference(PetscObject,const char[]); 1724014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectQuery(PetscObject,const char[],PetscObject *); 1725bdf89e91SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectComposeFunction_Private(PetscObject,const char[],void (*)(void)); 1726bdf89e91SBarry Smith #define PetscObjectComposeFunction(a,b,d) PetscObjectComposeFunction_Private(a,b,(PetscVoidFunction)(d)) 1727014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectSetFromOptions(PetscObject); 1728014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectSetUp(PetscObject); 17290eb63584SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectSetPrintedOptions(PetscObject); 17300eb63584SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectInheritPrintedOptions(PetscObject,PetscObject); 1731014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscCommGetNewTag(MPI_Comm,PetscMPIInt *); 1732d382aafbSBarry Smith 1733665c2dedSJed Brown #include <petscviewertypes.h> 1734639ff905SBarry Smith #include <petscoptions.h> 1735639ff905SBarry Smith 17360633abcbSJed Brown PETSC_EXTERN PetscErrorCode PetscObjectsListGetGlobalNumbering(MPI_Comm,PetscInt,PetscObject*,PetscInt*,PetscInt*); 17370633abcbSJed Brown 1738639ff905SBarry Smith PETSC_EXTERN PetscErrorCode PetscMemoryShowUsage(PetscViewer,const char[]); 1739c5e4d11fSDmitry Karpeev PETSC_EXTERN PetscErrorCode PetscMemoryView(PetscViewer,const char[]); 1740dae58748SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectPrintClassNamePrefixType(PetscObject,PetscViewer); 1741639ff905SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectView(PetscObject,PetscViewer); 17420005d66cSJed Brown #define PetscObjectQueryFunction(obj,name,fptr) PetscObjectQueryFunction_Private((obj),(name),(PetscVoidFunction*)(fptr)) 17430005d66cSJed Brown PETSC_EXTERN PetscErrorCode PetscObjectQueryFunction_Private(PetscObject,const char[],void (**)(void)); 1744014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectSetOptionsPrefix(PetscObject,const char[]); 1745014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectAppendOptionsPrefix(PetscObject,const char[]); 1746014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectPrependOptionsPrefix(PetscObject,const char[]); 1747014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetOptionsPrefix(PetscObject,const char*[]); 1748014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectChangeTypeName(PetscObject,const char[]); 1749014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectRegisterDestroy(PetscObject); 1750014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectRegisterDestroyAll(void); 1751685405a1SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectViewFromOptions(PetscObject,PetscObject,const char[]); 1752014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectName(PetscObject); 1753014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectTypeCompare(PetscObject,const char[],PetscBool *); 17544099cc6bSBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectBaseTypeCompare(PetscObject,const char[],PetscBool *); 1755014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectTypeCompareAny(PetscObject,PetscBool*,const char[],...); 1756014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRegisterFinalize(PetscErrorCode (*)(void)); 1757014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRegisterFinalizeAll(void); 1758d382aafbSBarry Smith 1759e04113cfSBarry Smith #if defined(PETSC_HAVE_SAWS) 17607aab2a10SBarry Smith PETSC_EXTERN PetscErrorCode PetscSAWsBlock(void); 1761e04113cfSBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectSAWsViewOff(PetscObject); 1762e04113cfSBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectSAWsSetBlock(PetscObject,PetscBool); 1763e04113cfSBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectSAWsBlock(PetscObject); 1764e04113cfSBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectSAWsGrantAccess(PetscObject); 1765e04113cfSBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectSAWsTakeAccess(PetscObject); 1766e04113cfSBarry Smith PETSC_EXTERN void PetscStackSAWsGrantAccess(void); 1767e04113cfSBarry Smith PETSC_EXTERN void PetscStackSAWsTakeAccess(void); 1768e04113cfSBarry Smith PETSC_EXTERN PetscErrorCode PetscStackViewSAWs(void); 1769e04113cfSBarry Smith PETSC_EXTERN PetscErrorCode PetscStackSAWsViewOff(void); 177015681b3cSBarry Smith 1771ec7429eaSBarry Smith #else 17727aab2a10SBarry Smith #define PetscSAWsBlock() 0 1773e04113cfSBarry Smith #define PetscObjectSAWsViewOff(obj) 0 1774e04113cfSBarry Smith #define PetscObjectSAWsSetBlock(obj,flg) 0 1775e04113cfSBarry Smith #define PetscObjectSAWsBlock(obj) 0 1776e04113cfSBarry Smith #define PetscObjectSAWsGrantAccess(obj) 0 1777e04113cfSBarry Smith #define PetscObjectSAWsTakeAccess(obj) 0 1778e04113cfSBarry Smith #define PetscStackViewSAWs() 0 1779e04113cfSBarry Smith #define PetscStackSAWsViewOff() 0 1780e04113cfSBarry Smith #define PetscStackSAWsTakeAccess() 1781e04113cfSBarry Smith #define PetscStackSAWsGrantAccess() 178215681b3cSBarry Smith 1783ec7429eaSBarry Smith #endif 1784b90c6cbeSBarry Smith 17857d5d4d99SBarry Smith typedef void* PetscDLHandle; 1786e4d177b5SBarry Smith typedef enum {PETSC_DL_DECIDE=0,PETSC_DL_NOW=1,PETSC_DL_LOCAL=2} PetscDLMode; 178782b97d80SJed Brown PETSC_EXTERN PetscErrorCode PetscDLOpen(const char[],PetscDLMode,PetscDLHandle *); 178882b97d80SJed Brown PETSC_EXTERN PetscErrorCode PetscDLClose(PetscDLHandle *); 178982b97d80SJed Brown PETSC_EXTERN PetscErrorCode PetscDLSym(PetscDLHandle,const char[],void **); 17907d5d4d99SBarry Smith 17915fe58b6fSBarry Smith #if defined(PETSC_USE_DEBUG) 1792a64a8e02SBarry Smith PETSC_EXTERN PetscErrorCode PetscMallocGetStack(void*,PetscStack**); 17935fe58b6fSBarry Smith #endif 17947eb1d149SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectsDump(FILE*,PetscBool); 1795a64a8e02SBarry Smith 1796d382aafbSBarry Smith /*S 1797140e18c1SBarry Smith PetscObjectList - Linked list of PETSc objects, each accessable by string name 1798d382aafbSBarry Smith 17991d0fab5eSBarry Smith Level: developer 1800d382aafbSBarry Smith 1801e28ce29aSPatrick Sanan Notes: 1802e28ce29aSPatrick Sanan Used by PetscObjectCompose() and PetscObjectQuery() 18031d0fab5eSBarry Smith 1804140e18c1SBarry Smith .seealso: PetscObjectListAdd(), PetscObjectListDestroy(), PetscObjectListFind(), PetscObjectCompose(), PetscObjectQuery(), PetscFunctionList 1805d382aafbSBarry Smith S*/ 1806140e18c1SBarry Smith typedef struct _n_PetscObjectList *PetscObjectList; 1807d382aafbSBarry Smith 1808140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectListDestroy(PetscObjectList*); 1809140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectListFind(PetscObjectList,const char[],PetscObject*); 1810140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectListReverseFind(PetscObjectList,PetscObject,char**,PetscBool*); 1811140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectListAdd(PetscObjectList *,const char[],PetscObject); 1812140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectListRemoveReference(PetscObjectList *,const char[]); 1813140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectListDuplicate(PetscObjectList,PetscObjectList *); 1814d382aafbSBarry Smith 1815d382aafbSBarry Smith /* 1816503cfb0cSBarry Smith Dynamic library lists. Lists of names of routines in objects or in dynamic 1817d382aafbSBarry Smith link libraries that will be loaded as needed. 1818d382aafbSBarry Smith */ 1819a240a19fSJed Brown 1820a240a19fSJed Brown #define PetscFunctionListAdd(list,name,fptr) PetscFunctionListAdd_Private((list),(name),(PetscVoidFunction)(fptr)) 1821a240a19fSJed Brown PETSC_EXTERN PetscErrorCode PetscFunctionListAdd_Private(PetscFunctionList*,const char[],void (*)(void)); 1822140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscFunctionListDestroy(PetscFunctionList*); 18231c9cd337SJed Brown #define PetscFunctionListFind(list,name,fptr) PetscFunctionListFind_Private((list),(name),(PetscVoidFunction*)(fptr)) 18241c9cd337SJed Brown PETSC_EXTERN PetscErrorCode PetscFunctionListFind_Private(PetscFunctionList,const char[],void (**)(void)); 1825140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscFunctionListPrintTypes(MPI_Comm,FILE*,const char[],const char[],const char[],const char[],PetscFunctionList,const char[]); 1826140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscFunctionListDuplicate(PetscFunctionList,PetscFunctionList *); 1827140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscFunctionListView(PetscFunctionList,PetscViewer); 1828140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscFunctionListGet(PetscFunctionList,const char ***,int*); 1829d382aafbSBarry Smith 1830d382aafbSBarry Smith /*S 1831d382aafbSBarry Smith PetscDLLibrary - Linked list of dynamics libraries to search for functions 1832d382aafbSBarry Smith 1833d382aafbSBarry Smith Level: advanced 1834d382aafbSBarry Smith 1835d382aafbSBarry Smith .seealso: PetscDLLibraryOpen() 1836d382aafbSBarry Smith S*/ 1837d382aafbSBarry Smith typedef struct _n_PetscDLLibrary *PetscDLLibrary; 1838014dd563SJed Brown PETSC_EXTERN PetscDLLibrary PetscDLLibrariesLoaded; 1839014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDLLibraryAppend(MPI_Comm,PetscDLLibrary *,const char[]); 1840014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDLLibraryPrepend(MPI_Comm,PetscDLLibrary *,const char[]); 1841014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDLLibrarySym(MPI_Comm,PetscDLLibrary *,const char[],const char[],void **); 1842014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDLLibraryPrintPath(PetscDLLibrary); 1843014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDLLibraryRetrieve(MPI_Comm,const char[],char *,size_t,PetscBool *); 1844014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDLLibraryOpen(MPI_Comm,const char[],PetscDLLibrary *); 1845014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDLLibraryClose(PetscDLLibrary); 1846d382aafbSBarry Smith 1847d382aafbSBarry Smith /* 1848d382aafbSBarry Smith Useful utility routines 1849d382aafbSBarry Smith */ 1850014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSplitOwnership(MPI_Comm,PetscInt*,PetscInt*); 1851014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSplitOwnershipBlock(MPI_Comm,PetscInt,PetscInt*,PetscInt*); 1852014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSequentialPhaseBegin(MPI_Comm,PetscMPIInt); 1853014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSequentialPhaseEnd(MPI_Comm,PetscMPIInt); 1854014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBarrier(PetscObject); 1855014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMPIDump(FILE*); 1856d382aafbSBarry Smith 1857503cfb0cSBarry Smith /* 1858ace3abfcSBarry Smith PetscNot - negates a logical type value and returns result as a PetscBool 1859503cfb0cSBarry Smith 1860e28ce29aSPatrick Sanan Notes: 1861e28ce29aSPatrick Sanan This is useful in cases like 1862503cfb0cSBarry Smith $ int *a; 1863ace3abfcSBarry Smith $ PetscBool flag = PetscNot(a) 18641cc8b206SBarry Smith where !a would not return a PetscBool because we cannot provide a cast from int to PetscBool in C. 1865503cfb0cSBarry Smith */ 1866d382aafbSBarry Smith #define PetscNot(a) ((a) ? PETSC_FALSE : PETSC_TRUE) 1867503cfb0cSBarry Smith 1868d382aafbSBarry Smith /*MC 1869d382aafbSBarry Smith PetscHelpPrintf - Prints help messages. 1870d382aafbSBarry Smith 1871d382aafbSBarry Smith Synopsis: 1872aaa7dc30SBarry Smith #include <petscsys.h> 1873d382aafbSBarry Smith PetscErrorCode (*PetscHelpPrintf)(const char format[],...); 1874d382aafbSBarry Smith 1875eca87e8dSBarry Smith Not Collective 1876eca87e8dSBarry Smith 1877d382aafbSBarry Smith Input Parameters: 1878d382aafbSBarry Smith . format - the usual printf() format string 1879d382aafbSBarry Smith 1880d382aafbSBarry Smith Level: developer 1881d382aafbSBarry Smith 1882d382aafbSBarry Smith Fortran Note: 1883d382aafbSBarry Smith This routine is not supported in Fortran. 1884d382aafbSBarry Smith 1885d382aafbSBarry Smith Concepts: help messages^printing 1886d382aafbSBarry Smith Concepts: printing^help messages 1887d382aafbSBarry Smith 1888d382aafbSBarry Smith .seealso: PetscFPrintf(), PetscSynchronizedPrintf(), PetscErrorPrintf() 1889d382aafbSBarry Smith M*/ 1890014dd563SJed Brown PETSC_EXTERN PetscErrorCode (*PetscHelpPrintf)(MPI_Comm,const char[],...); 1891d382aafbSBarry Smith 1892fcfd50ebSBarry Smith /* 1893fcfd50ebSBarry Smith Defines PETSc profiling. 1894fcfd50ebSBarry Smith */ 18952c8e378dSBarry Smith #include <petsclog.h> 1896fcfd50ebSBarry Smith 1897fcfd50ebSBarry Smith /* 1898fcfd50ebSBarry Smith Simple PETSc parallel IO for ASCII printing 1899fcfd50ebSBarry Smith */ 1900014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFixFilename(const char[],char[]); 1901014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFOpen(MPI_Comm,const char[],const char[],FILE**); 1902014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFClose(MPI_Comm,FILE*); 1903014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFPrintf(MPI_Comm,FILE*,const char[],...); 1904014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPrintf(MPI_Comm,const char[],...); 1905014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSNPrintf(char*,size_t,const char [],...); 1906014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSNPrintfCount(char*,size_t,const char [],size_t*,...); 1907fcfd50ebSBarry Smith 1908014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscErrorPrintfDefault(const char [],...); 1909014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscErrorPrintfNone(const char [],...); 1910014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscHelpPrintfDefault(MPI_Comm,const char [],...); 1911d382aafbSBarry Smith 1912d382aafbSBarry Smith #if defined(PETSC_HAVE_POPEN) 1913014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPOpen(MPI_Comm,const char[],const char[],const char[],FILE **); 191496a8e8cbSBarry Smith PETSC_EXTERN PetscErrorCode PetscPClose(MPI_Comm,FILE*,int*); 191574ba8654SBarry Smith PETSC_EXTERN PetscErrorCode PetscPOpenSetMachine(const char[]); 1916d382aafbSBarry Smith #endif 1917d382aafbSBarry Smith 1918014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSynchronizedPrintf(MPI_Comm,const char[],...); 1919014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSynchronizedFPrintf(MPI_Comm,FILE*,const char[],...); 19200ec8b6e3SBarry Smith PETSC_EXTERN PetscErrorCode PetscSynchronizedFlush(MPI_Comm,FILE*); 1921014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSynchronizedFGets(MPI_Comm,FILE*,size_t,char[]); 1922014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStartMatlab(MPI_Comm,const char[],const char[],FILE**); 1923014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStartJava(MPI_Comm,const char[],const char[],FILE**); 1924014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetPetscDir(const char*[]); 1925d382aafbSBarry Smith 1926014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPopUpSelect(MPI_Comm,const char*,const char*,int,const char**,int*); 1927d382aafbSBarry Smith 1928d382aafbSBarry Smith /*S 1929d382aafbSBarry Smith PetscContainer - Simple PETSc object that contains a pointer to any required data 1930d382aafbSBarry Smith 1931d382aafbSBarry Smith Level: advanced 1932d382aafbSBarry Smith 1933d382aafbSBarry Smith .seealso: PetscObject, PetscContainerCreate() 1934d382aafbSBarry Smith S*/ 1935014dd563SJed Brown PETSC_EXTERN PetscClassId PETSC_CONTAINER_CLASSID; 1936d382aafbSBarry Smith typedef struct _p_PetscContainer* PetscContainer; 1937014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscContainerGetPointer(PetscContainer,void **); 1938014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscContainerSetPointer(PetscContainer,void *); 1939014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscContainerDestroy(PetscContainer*); 1940014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscContainerCreate(MPI_Comm,PetscContainer *); 1941014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscContainerSetUserDestroy(PetscContainer, PetscErrorCode (*)(void*)); 1942b61ba218SStefano Zampini PETSC_EXTERN PetscErrorCode PetscContainerUserDestroyDefault(void*); 1943d382aafbSBarry Smith 1944d382aafbSBarry Smith /* 1945d382aafbSBarry Smith For use in debuggers 1946d382aafbSBarry Smith */ 1947014dd563SJed Brown PETSC_EXTERN PetscMPIInt PetscGlobalRank; 1948014dd563SJed Brown PETSC_EXTERN PetscMPIInt PetscGlobalSize; 1949014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscIntView(PetscInt,const PetscInt[],PetscViewer); 1950014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRealView(PetscInt,const PetscReal[],PetscViewer); 1951014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscScalarView(PetscInt,const PetscScalar[],PetscViewer); 1952d382aafbSBarry Smith 1953a663daf8SBarry Smith #include <stddef.h> 1954a3aaec0aSJed Brown #include <string.h> /* for memcpy, memset */ 1955d382aafbSBarry Smith #if defined(PETSC_HAVE_STDLIB_H) 1956d382aafbSBarry Smith #include <stdlib.h> 1957d382aafbSBarry Smith #endif 19586c7e564aSBarry Smith 19594a92a979SJed Brown #if defined(PETSC_HAVE_XMMINTRIN_H) && !defined(__CUDACC__) 1960d382aafbSBarry Smith #include <xmmintrin.h> 1961d382aafbSBarry Smith #endif 1962d382aafbSBarry Smith 1963d382aafbSBarry Smith /*@C 1964d382aafbSBarry Smith PetscMemcpy - Copies n bytes, beginning at location b, to the space 1965d382aafbSBarry Smith beginning at location a. The two memory regions CANNOT overlap, use 1966d382aafbSBarry Smith PetscMemmove() in that case. 1967d382aafbSBarry Smith 1968d382aafbSBarry Smith Not Collective 1969d382aafbSBarry Smith 1970d382aafbSBarry Smith Input Parameters: 1971d382aafbSBarry Smith + b - pointer to initial memory space 1972d382aafbSBarry Smith - n - length (in bytes) of space to copy 1973d382aafbSBarry Smith 1974d382aafbSBarry Smith Output Parameter: 1975d382aafbSBarry Smith . a - pointer to copy space 1976d382aafbSBarry Smith 1977d382aafbSBarry Smith Level: intermediate 1978d382aafbSBarry Smith 1979d382aafbSBarry Smith Compile Option: 1980d382aafbSBarry Smith PETSC_PREFER_DCOPY_FOR_MEMCPY will cause the BLAS dcopy() routine to be used 1981d382aafbSBarry Smith for memory copies on double precision values. 1982d382aafbSBarry Smith PETSC_PREFER_COPY_FOR_MEMCPY will cause C code to be used 1983d382aafbSBarry Smith for memory copies on double precision values. 1984d382aafbSBarry Smith PETSC_PREFER_FORTRAN_FORMEMCPY will cause Fortran code to be used 1985d382aafbSBarry Smith for memory copies on double precision values. 1986d382aafbSBarry Smith 1987d382aafbSBarry Smith Note: 1988d382aafbSBarry Smith This routine is analogous to memcpy(). 1989d382aafbSBarry Smith 1990503cfb0cSBarry Smith Developer Note: this is inlined for fastest performance 1991503cfb0cSBarry Smith 1992d382aafbSBarry Smith Concepts: memory^copying 1993d382aafbSBarry Smith Concepts: copying^memory 1994d382aafbSBarry Smith 1995d382aafbSBarry Smith .seealso: PetscMemmove() 1996d382aafbSBarry Smith 1997d382aafbSBarry Smith @*/ 19987087cfbeSBarry Smith PETSC_STATIC_INLINE PetscErrorCode PetscMemcpy(void *a,const void *b,size_t n) 1999d382aafbSBarry Smith { 2000d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 2001c5e4d11fSDmitry Karpeev size_t al = (size_t) a,bl = (size_t) b; 2002c5e4d11fSDmitry Karpeev size_t nl = (size_t) n; 2003a7e36092SMatthew G Knepley PetscFunctionBegin; 2004e32f2f54SBarry Smith if (n > 0 && !b) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_NULL,"Trying to copy from a null pointer"); 2005e32f2f54SBarry Smith if (n > 0 && !a) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_NULL,"Trying to copy to a null pointer"); 2006a7e36092SMatthew G Knepley #else 2007d382aafbSBarry Smith PetscFunctionBegin; 2008a7e36092SMatthew G Knepley #endif 2009a47a537aSLisandro Dalcin if (a != b && n > 0) { 2010d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 2011e47d2de2SBarry Smith if ((al > bl && (al - bl) < nl) || (bl - al) < nl) SETERRQ3(PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"Memory regions overlap: either use PetscMemmov()\n\ 2012d382aafbSBarry Smith or make sure your copy regions and lengths are correct. \n\ 2013d382aafbSBarry Smith Length (bytes) %ld first address %ld second address %ld",nl,al,bl); 2014d382aafbSBarry Smith #endif 2015d382aafbSBarry Smith #if (defined(PETSC_PREFER_DCOPY_FOR_MEMCPY) || defined(PETSC_PREFER_COPY_FOR_MEMCPY) || defined(PETSC_PREFER_FORTRAN_FORMEMCPY)) 2016c5e4d11fSDmitry Karpeev if (!(a % sizeof(PetscScalar)) && !(n % sizeof(PetscScalar))) { 2017d382aafbSBarry Smith size_t len = n/sizeof(PetscScalar); 2018d382aafbSBarry Smith #if defined(PETSC_PREFER_DCOPY_FOR_MEMCPY) 2019c5df96a5SBarry Smith PetscBLASInt one = 1,blen; 2020c5df96a5SBarry Smith PetscErrorCode ierr; 2021c5df96a5SBarry Smith ierr = PetscBLASIntCast(len,&blen);CHKERRQ(ierr); 20228b83055fSJed Brown PetscStackCallBLAS("BLAScopy",BLAScopy_(&blen,(PetscScalar *)b,&one,(PetscScalar *)a,&one)); 2023d382aafbSBarry Smith #elif defined(PETSC_PREFER_FORTRAN_FORMEMCPY) 2024d382aafbSBarry Smith fortrancopy_(&len,(PetscScalar*)b,(PetscScalar*)a); 2025d382aafbSBarry Smith #else 2026d382aafbSBarry Smith size_t i; 2027d382aafbSBarry Smith PetscScalar *x = (PetscScalar*)b, *y = (PetscScalar*)a; 2028d382aafbSBarry Smith for (i=0; i<len; i++) y[i] = x[i]; 2029d382aafbSBarry Smith #endif 2030d382aafbSBarry Smith } else { 2031d382aafbSBarry Smith memcpy((char*)(a),(char*)(b),n); 2032d382aafbSBarry Smith } 2033d382aafbSBarry Smith #else 2034d382aafbSBarry Smith memcpy((char*)(a),(char*)(b),n); 2035d382aafbSBarry Smith #endif 2036d382aafbSBarry Smith } 2037d382aafbSBarry Smith PetscFunctionReturn(0); 2038d382aafbSBarry Smith } 2039d382aafbSBarry Smith 2040d382aafbSBarry Smith /*@C 2041d382aafbSBarry Smith PetscMemzero - Zeros the specified memory. 2042d382aafbSBarry Smith 2043d382aafbSBarry Smith Not Collective 2044d382aafbSBarry Smith 2045d382aafbSBarry Smith Input Parameters: 2046d382aafbSBarry Smith + a - pointer to beginning memory location 2047d382aafbSBarry Smith - n - length (in bytes) of memory to initialize 2048d382aafbSBarry Smith 2049d382aafbSBarry Smith Level: intermediate 2050d382aafbSBarry Smith 2051d382aafbSBarry Smith Compile Option: 2052d382aafbSBarry Smith PETSC_PREFER_BZERO - on certain machines (the IBM RS6000) the bzero() routine happens 2053d382aafbSBarry Smith to be faster than the memset() routine. This flag causes the bzero() routine to be used. 2054d382aafbSBarry Smith 2055503cfb0cSBarry Smith Developer Note: this is inlined for fastest performance 2056503cfb0cSBarry Smith 2057d382aafbSBarry Smith Concepts: memory^zeroing 2058d382aafbSBarry Smith Concepts: zeroing^memory 2059d382aafbSBarry Smith 2060d382aafbSBarry Smith .seealso: PetscMemcpy() 2061d382aafbSBarry Smith @*/ 20627087cfbeSBarry Smith PETSC_STATIC_INLINE PetscErrorCode PetscMemzero(void *a,size_t n) 2063d382aafbSBarry Smith { 2064d382aafbSBarry Smith if (n > 0) { 2065d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 2066e32f2f54SBarry Smith if (!a) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_NULL,"Trying to zero at a null pointer"); 2067d382aafbSBarry Smith #endif 2068d382aafbSBarry Smith #if defined(PETSC_PREFER_ZERO_FOR_MEMZERO) 2069d382aafbSBarry Smith if (!(((long) a) % sizeof(PetscScalar)) && !(n % sizeof(PetscScalar))) { 2070d382aafbSBarry Smith size_t i,len = n/sizeof(PetscScalar); 2071d382aafbSBarry Smith PetscScalar *x = (PetscScalar*)a; 2072d382aafbSBarry Smith for (i=0; i<len; i++) x[i] = 0.0; 2073d382aafbSBarry Smith } else { 2074d382aafbSBarry Smith #elif defined(PETSC_PREFER_FORTRAN_FOR_MEMZERO) 2075d382aafbSBarry Smith if (!(((long) a) % sizeof(PetscScalar)) && !(n % sizeof(PetscScalar))) { 2076d382aafbSBarry Smith PetscInt len = n/sizeof(PetscScalar); 2077d382aafbSBarry Smith fortranzero_(&len,(PetscScalar*)a); 2078d382aafbSBarry Smith } else { 2079d382aafbSBarry Smith #endif 2080d382aafbSBarry Smith #if defined(PETSC_PREFER_BZERO) 2081d382aafbSBarry Smith bzero((char *)a,n); 2082d382aafbSBarry Smith #else 2083d382aafbSBarry Smith memset((char*)a,0,n); 2084d382aafbSBarry Smith #endif 2085d382aafbSBarry Smith #if defined(PETSC_PREFER_ZERO_FOR_MEMZERO) || defined(PETSC_PREFER_FORTRAN_FOR_MEMZERO) 2086d382aafbSBarry Smith } 2087d382aafbSBarry Smith #endif 2088d382aafbSBarry Smith } 2089d382aafbSBarry Smith return 0; 2090d382aafbSBarry Smith } 2091d382aafbSBarry Smith 2092d382aafbSBarry Smith /*MC 2093d382aafbSBarry Smith PetscPrefetchBlock - Prefetches a block of memory 2094d382aafbSBarry Smith 2095eca87e8dSBarry Smith Synopsis: 2096aaa7dc30SBarry Smith #include <petscsys.h> 2097eca87e8dSBarry Smith void PetscPrefetchBlock(const anytype *a,size_t n,int rw,int t) 2098eca87e8dSBarry Smith 2099d382aafbSBarry Smith Not Collective 2100d382aafbSBarry Smith 2101d382aafbSBarry Smith Input Parameters: 2102d382aafbSBarry Smith + a - pointer to first element to fetch (any type but usually PetscInt or PetscScalar) 2103d382aafbSBarry Smith . n - number of elements to fetch 2104d382aafbSBarry Smith . rw - 1 if the memory will be written to, otherwise 0 (ignored by many processors) 210550d8bf02SJed Brown - t - temporal locality (PETSC_PREFETCH_HINT_{NTA,T0,T1,T2}), see note 2106d382aafbSBarry Smith 2107d382aafbSBarry Smith Level: developer 2108d382aafbSBarry Smith 2109d382aafbSBarry Smith Notes: 2110d382aafbSBarry Smith The last two arguments (rw and t) must be compile-time constants. 2111d382aafbSBarry Smith 211250d8bf02SJed Brown Adopting Intel's x86/x86-64 conventions, there are four levels of temporal locality. Not all architectures offer 211350d8bf02SJed Brown equivalent locality hints, but the following macros are always defined to their closest analogue. 211450d8bf02SJed Brown + PETSC_PREFETCH_HINT_NTA - Non-temporal. Prefetches directly to L1, evicts to memory (skips higher level cache unless it was already there when prefetched). 211563cf1ef0SJed Brown . PETSC_PREFETCH_HINT_T0 - Fetch to all levels of cache and evict to the closest level. Use this when the memory will be reused regularly despite necessary eviction from L1. 211663cf1ef0SJed Brown . PETSC_PREFETCH_HINT_T1 - Fetch to level 2 and higher (not L1). 211763cf1ef0SJed Brown - PETSC_PREFETCH_HINT_T2 - Fetch to high-level cache only. (On many systems, T0 and T1 are equivalent.) 2118d382aafbSBarry Smith 2119d382aafbSBarry Smith This function does nothing on architectures that do not support prefetch and never errors (even if passed an invalid 2120d382aafbSBarry Smith address). 2121d382aafbSBarry Smith 2122d382aafbSBarry Smith Concepts: memory 2123d382aafbSBarry Smith M*/ 2124d382aafbSBarry Smith #define PetscPrefetchBlock(a,n,rw,t) do { \ 2125d382aafbSBarry Smith const char *_p = (const char*)(a),*_end = (const char*)((a)+(n)); \ 2126d382aafbSBarry Smith for ( ; _p < _end; _p += PETSC_LEVEL1_DCACHE_LINESIZE) PETSC_Prefetch(_p,(rw),(t)); \ 2127d382aafbSBarry Smith } while (0) 2128d382aafbSBarry Smith 2129d382aafbSBarry Smith /* 2130d382aafbSBarry Smith Determine if some of the kernel computation routines use 2131d382aafbSBarry Smith Fortran (rather than C) for the numerical calculations. On some machines 2132d382aafbSBarry Smith and compilers (like complex numbers) the Fortran version of the routines 2133d382aafbSBarry Smith is faster than the C/C++ versions. The flag --with-fortran-kernels 2134e2e64c6bSBarry Smith should be used with ./configure to turn these on. 2135d382aafbSBarry Smith */ 2136d382aafbSBarry Smith #if defined(PETSC_USE_FORTRAN_KERNELS) 2137d382aafbSBarry Smith 2138d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MULTCRL) 2139d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MULTCRL 2140d382aafbSBarry Smith #endif 2141d382aafbSBarry Smith 21425a11e1b2SBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MULTAIJPERM) 21435a11e1b2SBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MULTAIJPERM 2144d382aafbSBarry Smith #endif 2145d382aafbSBarry Smith 2146d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MULTAIJ) 2147d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MULTAIJ 2148d382aafbSBarry Smith #endif 2149d382aafbSBarry Smith 2150d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MULTTRANSPOSEAIJ) 2151d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MULTTRANSPOSEAIJ 2152d382aafbSBarry Smith #endif 2153d382aafbSBarry Smith 2154d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_NORM) 2155d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_NORM 2156d382aafbSBarry Smith #endif 2157d382aafbSBarry Smith 2158d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MAXPY) 2159d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MAXPY 2160d382aafbSBarry Smith #endif 2161d382aafbSBarry Smith 2162d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_SOLVEAIJ) 2163d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_SOLVEAIJ 2164d382aafbSBarry Smith #endif 2165d382aafbSBarry Smith 2166d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_RELAXAIJ) 2167d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_RELAXAIJ 2168d382aafbSBarry Smith #endif 2169d382aafbSBarry Smith 2170d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_SOLVEBAIJ) 2171d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_SOLVEBAIJ 2172d382aafbSBarry Smith #endif 2173d382aafbSBarry Smith 2174d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MULTADDAIJ) 2175d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MULTADDAIJ 2176d382aafbSBarry Smith #endif 2177d382aafbSBarry Smith 2178d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MDOT) 2179d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MDOT 2180d382aafbSBarry Smith #endif 2181d382aafbSBarry Smith 2182d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_XTIMESY) 2183d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_XTIMESY 2184d382aafbSBarry Smith #endif 2185d382aafbSBarry Smith 2186d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_AYPX) 2187d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_AYPX 2188d382aafbSBarry Smith #endif 2189d382aafbSBarry Smith 2190d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_WAXPY) 2191d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_WAXPY 2192d382aafbSBarry Smith #endif 2193d382aafbSBarry Smith 2194d382aafbSBarry Smith #endif 2195d382aafbSBarry Smith 2196d382aafbSBarry Smith /* 2197d382aafbSBarry Smith Macros for indicating code that should be compiled with a C interface, 2198d382aafbSBarry Smith rather than a C++ interface. Any routines that are dynamically loaded 2199d382aafbSBarry Smith (such as the PCCreate_XXX() routines) must be wrapped so that the name 2200d382aafbSBarry Smith mangler does not change the functions symbol name. This just hides the 2201d382aafbSBarry Smith ugly extern "C" {} wrappers. 2202d382aafbSBarry Smith */ 2203d382aafbSBarry Smith #if defined(__cplusplus) 2204d382aafbSBarry Smith #define EXTERN_C_BEGIN extern "C" { 2205d382aafbSBarry Smith #define EXTERN_C_END } 2206d382aafbSBarry Smith #else 2207d382aafbSBarry Smith #define EXTERN_C_BEGIN 2208d382aafbSBarry Smith #define EXTERN_C_END 2209d382aafbSBarry Smith #endif 2210d382aafbSBarry Smith 2211d382aafbSBarry Smith /* --------------------------------------------------------------------*/ 2212d382aafbSBarry Smith 2213d382aafbSBarry Smith /*MC 2214d382aafbSBarry Smith MPI_Comm - the basic object used by MPI to determine which processes are involved in a 2215d382aafbSBarry Smith communication 2216d382aafbSBarry Smith 2217d382aafbSBarry Smith Level: beginner 2218d382aafbSBarry Smith 2219d382aafbSBarry Smith Note: This manual page is a place-holder because MPICH does not have a manual page for MPI_Comm 2220d382aafbSBarry Smith 2221d382aafbSBarry Smith .seealso: PETSC_COMM_WORLD, PETSC_COMM_SELF 2222d382aafbSBarry Smith M*/ 2223d382aafbSBarry Smith 2224d382aafbSBarry Smith /*MC 2225d382aafbSBarry Smith PetscScalar - PETSc type that represents either a double precision real number, a double precision 2226390e1bf2SBarry Smith complex number, a single precision real number, a __float128 real or complex or a __fp16 real - if the code is configured 2227390e1bf2SBarry Smith with --with-scalar-type=real,complex --with-precision=single,double,__float128,__fp16 2228390e1bf2SBarry Smith 2229e28ce29aSPatrick Sanan Notes: 2230e28ce29aSPatrick Sanan For MPI calls that require datatypes, use MPIU_SCALAR as the datatype for PetscScalar and MPIU_SUM, MPIU_MAX etc for operations. They will automatically work correctly regardless of the size of PetscScalar. 2231d382aafbSBarry Smith 2232d382aafbSBarry Smith Level: beginner 2233d382aafbSBarry Smith 2234e28ce29aSPatrick Sanan .seealso: PetscReal, PetscComplex, PetscInt, MPIU_REAL, MPIU_SCALAR, MPIU_COMPLEX, MPIU_INT 2235d382aafbSBarry Smith M*/ 2236d382aafbSBarry Smith 2237d382aafbSBarry Smith /*MC 22388619c96cSJed Brown PetscComplex - PETSc type that represents a complex number with precision matching that of PetscReal. 22398619c96cSJed Brown 22408619c96cSJed Brown Synopsis: 22418619c96cSJed Brown #include <petscsys.h> 22428619c96cSJed Brown PetscComplex number = 1. + 2.*PETSC_i; 22438619c96cSJed Brown 2244e28ce29aSPatrick Sanan Notes: 2245e28ce29aSPatrick Sanan For MPI calls that require datatypes, use MPIU_COMPLEX as the datatype for PetscComplex and MPIU_SUM etc for operations. 2246e28ce29aSPatrick Sanan They will automatically work correctly regardless of the size of PetscComplex. 2247390e1bf2SBarry Smith 2248390e1bf2SBarry Smith See PetscScalar for details on how to ./configure the size of PetscReal 2249390e1bf2SBarry Smith 22508cd53115SBarry Smith Complex numbers are automatically available if PETSc was able to find a working complex implementation 22518619c96cSJed Brown 2252e28ce29aSPatrick Sanan Level: beginner 2253e28ce29aSPatrick Sanan 2254e28ce29aSPatrick Sanan .seealso: PetscReal, PetscScalar, PetscComplex, PetscInt, MPIU_REAL, MPIU_SCALAR, MPIU_COMPLEX, MPIU_INT, PETSC_i 22558619c96cSJed Brown M*/ 22568619c96cSJed Brown 22578619c96cSJed Brown /*MC 2258d382aafbSBarry Smith PetscReal - PETSc type that represents a real number version of PetscScalar 2259d382aafbSBarry Smith 2260e28ce29aSPatrick Sanan 2261e28ce29aSPatrick Sanan Notes: 2262e28ce29aSPatrick Sanan For MPI calls that require datatypes, use MPIU_REAL as the datatype for PetscScalar and MPIU_SUM, MPIU_MAX, etc. for operations. 2263e28ce29aSPatrick Sanan They will automatically work correctly regardless of the size of PetscReal. 2264e28ce29aSPatrick Sanan 2265e28ce29aSPatrick Sanan See PetscScalar for details on how to ./configure the size of PetscReal. 2266e28ce29aSPatrick Sanan 2267d382aafbSBarry Smith Level: beginner 2268d382aafbSBarry Smith 2269e28ce29aSPatrick Sanan .seealso: PetscScalar, PetscComplex, PetscInt, MPIU_REAL, MPIU_SCALAR, MPIU_COMPLEX, MPIU_INT 2270d382aafbSBarry Smith M*/ 2271d382aafbSBarry Smith 2272d382aafbSBarry Smith /*MC 2273d382aafbSBarry Smith MPIU_SCALAR - MPI datatype corresponding to PetscScalar 2274d382aafbSBarry Smith 2275e28ce29aSPatrick Sanan Notes: 2276e28ce29aSPatrick Sanan In MPI calls that require an MPI datatype that matches a PetscScalar or array of PetscScalar values, pass this value. 2277e28ce29aSPatrick Sanan 2278d382aafbSBarry Smith Level: beginner 2279d382aafbSBarry Smith 2280e28ce29aSPatrick Sanan .seealso: PetscReal, PetscScalar, PetscComplex, PetscInt, MPIU_REAL, MPIU_COMPLEX, MPIU_INT 2281e28ce29aSPatrick Sanan M*/ 2282d382aafbSBarry Smith 2283e28ce29aSPatrick Sanan /*MC 2284e28ce29aSPatrick Sanan MPIU_COMPLEX - MPI datatype corresponding to PetscComplex 2285e28ce29aSPatrick Sanan 2286e28ce29aSPatrick Sanan Notes: 2287e28ce29aSPatrick Sanan In MPI calls that require an MPI datatype that matches a PetscComplex or array of PetscComplex values, pass this value. 2288e28ce29aSPatrick Sanan 2289e28ce29aSPatrick Sanan Level: beginner 2290e28ce29aSPatrick Sanan 2291e28ce29aSPatrick Sanan .seealso: PetscReal, PetscScalar, PetscComplex, PetscInt, MPIU_REAL, MPIU_SCALAR, MPIU_COMPLEX, MPIU_INT, PETSC_i 2292e28ce29aSPatrick Sanan M*/ 2293e28ce29aSPatrick Sanan 2294e28ce29aSPatrick Sanan /*MC 2295e28ce29aSPatrick Sanan MPIU_REAL - MPI datatype corresponding to PetscReal 2296e28ce29aSPatrick Sanan 2297e28ce29aSPatrick Sanan Notes: 2298e28ce29aSPatrick Sanan In MPI calls that require an MPI datatype that matches a PetscReal or array of PetscReal values, pass this value. 2299e28ce29aSPatrick Sanan 2300e28ce29aSPatrick Sanan Level: beginner 2301e28ce29aSPatrick Sanan 2302e28ce29aSPatrick Sanan .seealso: PetscReal, PetscScalar, PetscComplex, PetscInt, MPIU_SCALAR, MPIU_COMPLEX, MPIU_INT 2303d382aafbSBarry Smith M*/ 2304d382aafbSBarry Smith 2305d382aafbSBarry Smith #if defined(PETSC_HAVE_MPIIO) 2306d382aafbSBarry Smith #if !defined(PETSC_WORDS_BIGENDIAN) 2307014dd563SJed Brown PETSC_EXTERN PetscErrorCode MPIU_File_write_all(MPI_File,void*,PetscMPIInt,MPI_Datatype,MPI_Status*); 2308014dd563SJed Brown PETSC_EXTERN PetscErrorCode MPIU_File_read_all(MPI_File,void*,PetscMPIInt,MPI_Datatype,MPI_Status*); 2309d382aafbSBarry Smith #else 2310d382aafbSBarry Smith #define MPIU_File_write_all(a,b,c,d,e) MPI_File_write_all(a,b,c,d,e) 2311d382aafbSBarry Smith #define MPIU_File_read_all(a,b,c,d,e) MPI_File_read_all(a,b,c,d,e) 2312d382aafbSBarry Smith #endif 2313d382aafbSBarry Smith #endif 2314d382aafbSBarry Smith 2315d382aafbSBarry Smith /* the following petsc_static_inline require petscerror.h */ 2316d382aafbSBarry Smith 2317d382aafbSBarry Smith /* Limit MPI to 32-bits */ 2318d382aafbSBarry Smith #define PETSC_MPI_INT_MAX 2147483647 2319d382aafbSBarry Smith #define PETSC_MPI_INT_MIN -2147483647 2320d382aafbSBarry Smith /* Limit BLAS to 32-bits */ 2321d382aafbSBarry Smith #define PETSC_BLAS_INT_MAX 2147483647 2322d382aafbSBarry Smith #define PETSC_BLAS_INT_MIN -2147483647 2323d382aafbSBarry Smith 232461b0d812SBarry Smith /*@C 232561b0d812SBarry Smith PetscBLASIntCast - casts a PetscInt (which may be 64 bits in size) to a PetscBLASInt (which may be 32 bits in size), generates an 232661b0d812SBarry Smith error if the PetscBLASInt is not large enough to hold the number. 232761b0d812SBarry Smith 232861b0d812SBarry Smith Not Collective 232961b0d812SBarry Smith 233061b0d812SBarry Smith Input Parameter: 233161b0d812SBarry Smith . a - the PetscInt value 233261b0d812SBarry Smith 233361b0d812SBarry Smith Output Parameter: 233461b0d812SBarry Smith . b - the resulting PetscBLASInt value 233561b0d812SBarry Smith 233661b0d812SBarry Smith Level: advanced 233761b0d812SBarry Smith 233861b0d812SBarry Smith .seealso: PetscBLASInt, PetscMPIInt, PetscInt, PetscMPIIntCast() 233961b0d812SBarry Smith @*/ 2340c5df96a5SBarry Smith PETSC_STATIC_INLINE PetscErrorCode PetscBLASIntCast(PetscInt a,PetscBLASInt *b) 2341c5df96a5SBarry Smith { 2342c5df96a5SBarry Smith PetscFunctionBegin; 2343ab7117d1SBarry Smith *b = (PetscBLASInt)(a); 2344c5df96a5SBarry Smith #if defined(PETSC_USE_64BIT_INDICES) && !defined(PETSC_HAVE_64BIT_BLAS_INDICES) 2345c5df96a5SBarry Smith if ((a) > PETSC_BLAS_INT_MAX) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Array too long for BLAS/LAPACK"); 2346c5df96a5SBarry Smith #endif 2347c5df96a5SBarry Smith PetscFunctionReturn(0); 2348c5df96a5SBarry Smith } 2349c5df96a5SBarry Smith 235061b0d812SBarry Smith /*@C 235161b0d812SBarry Smith PetscMPIIntCast - casts a PetscInt (which may be 64 bits in size) to a PetscMPIInt (which may be 32 bits in size), generates an 235261b0d812SBarry Smith error if the PetscMPIInt is not large enough to hold the number. 235361b0d812SBarry Smith 235461b0d812SBarry Smith Not Collective 235561b0d812SBarry Smith 235661b0d812SBarry Smith Input Parameter: 235761b0d812SBarry Smith . a - the PetscInt value 235861b0d812SBarry Smith 235961b0d812SBarry Smith Output Parameter: 236061b0d812SBarry Smith . b - the resulting PetscMPIInt value 236161b0d812SBarry Smith 236261b0d812SBarry Smith Level: advanced 236361b0d812SBarry Smith 236461b0d812SBarry Smith .seealso: PetscBLASInt, PetscMPIInt, PetscInt, PetscBLASIntCast() 236561b0d812SBarry Smith @*/ 23664dc2109aSBarry Smith PETSC_STATIC_INLINE PetscErrorCode PetscMPIIntCast(PetscInt a,PetscMPIInt *b) 23674dc2109aSBarry Smith { 23684dc2109aSBarry Smith PetscFunctionBegin; 2369ab7117d1SBarry Smith *b = (PetscMPIInt)(a); 23704dc2109aSBarry Smith #if defined(PETSC_USE_64BIT_INDICES) 23714dc2109aSBarry Smith if ((a) > PETSC_MPI_INT_MAX) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Array too long for MPI"); 23724dc2109aSBarry Smith #endif 23734dc2109aSBarry Smith PetscFunctionReturn(0); 23744dc2109aSBarry Smith } 23754dc2109aSBarry Smith 2376bafee8b4SSatish Balay #define PetscInt64Mult(a,b) ((PetscInt64)(a))*((PetscInt64)(b)) 23772f18eb33SBarry Smith 23782f18eb33SBarry Smith /*@C 23792f18eb33SBarry Smith 23802f18eb33SBarry Smith PetscRealIntMultTruncate - Computes the product of a positive PetscReal and a positive PetscInt and truncates the value to slightly less than the maximal possible value 23812f18eb33SBarry Smith 23822f18eb33SBarry Smith Not Collective 23832f18eb33SBarry Smith 23842f18eb33SBarry Smith Input Parameter: 23852f18eb33SBarry Smith + a - the PetscReal value 23862f18eb33SBarry Smith - b - the second value 23872f18eb33SBarry Smith 2388390e1bf2SBarry Smith Returns: 2389390e1bf2SBarry Smith the result as a PetscInt value 23902f18eb33SBarry Smith 2391bafee8b4SSatish Balay Use PetscInt64Mult() to compute the product of two PetscInt as a PetscInt64 23922f18eb33SBarry Smith Use PetscIntMultTruncate() to compute the product of two positive PetscInt and truncate to fit a PetscInt 23932f18eb33SBarry Smith Use PetscIntMultError() to compute the product of two PetscInt if you wish to generate an error if the result will not fit in a PetscInt 23942f18eb33SBarry Smith 2395e28ce29aSPatrick Sanan Developers Note: 2396e28ce29aSPatrick Sanan We currently assume that PetscInt addition can never overflow, this is obviously wrong but requires many more checks. 23972f18eb33SBarry Smith 23982f18eb33SBarry Smith This is used where we compute approximate sizes for workspace and need to insure the workspace is index-able. 23992f18eb33SBarry Smith 24002f18eb33SBarry Smith Level: advanced 24012f18eb33SBarry Smith 2402390e1bf2SBarry Smith .seealso: PetscBLASInt, PetscMPIInt, PetscInt, PetscBLASIntCast(), PetscInt64Mult() 24032f18eb33SBarry Smith @*/ 24042f18eb33SBarry Smith PETSC_STATIC_INLINE PetscInt PetscRealIntMultTruncate(PetscReal a,PetscInt b) 24052f18eb33SBarry Smith { 2406bafee8b4SSatish Balay PetscInt64 r; 24072f18eb33SBarry Smith 2408bafee8b4SSatish Balay r = (PetscInt64) (a*(PetscReal)b); 24092f18eb33SBarry Smith if (r > PETSC_MAX_INT - 100) r = PETSC_MAX_INT - 100; 24102f18eb33SBarry Smith return (PetscInt) r; 24112f18eb33SBarry Smith } 24122f18eb33SBarry Smith 24132f18eb33SBarry Smith /*@C 24142f18eb33SBarry Smith 24152f18eb33SBarry Smith PetscIntMultTruncate - Computes the product of two positive PetscInt and truncates the value to slightly less than the maximal possible value 24162f18eb33SBarry Smith 24172f18eb33SBarry Smith Not Collective 24182f18eb33SBarry Smith 24192f18eb33SBarry Smith Input Parameter: 24202f18eb33SBarry Smith + a - the PetscInt value 24212f18eb33SBarry Smith - b - the second value 24222f18eb33SBarry Smith 2423390e1bf2SBarry Smith Returns: 2424390e1bf2SBarry Smith the result as a PetscInt value 24252f18eb33SBarry Smith 2426bafee8b4SSatish Balay Use PetscInt64Mult() to compute the product of two PetscInt as a PetscInt64 24272f18eb33SBarry Smith Use PetscRealIntMultTruncate() to compute the product of a PetscReal and a PetscInt and truncate to fit a PetscInt 24282f18eb33SBarry Smith Use PetscIntMultError() to compute the product of two PetscInt if you wish to generate an error if the result will not fit in a PetscInt 24292f18eb33SBarry Smith 24302f18eb33SBarry Smith Developers Note: We currently assume that PetscInt addition can never overflow, this is obviously wrong but requires many more checks. 24312f18eb33SBarry Smith 24322f18eb33SBarry Smith This is used where we compute approximate sizes for workspace and need to insure the workspace is index-able. 24332f18eb33SBarry Smith 24342f18eb33SBarry Smith Level: advanced 24352f18eb33SBarry Smith 2436390e1bf2SBarry Smith .seealso: PetscBLASInt, PetscMPIInt, PetscInt, PetscBLASIntCast(), PetscInt64Mult() 24372f18eb33SBarry Smith @*/ 24382f18eb33SBarry Smith PETSC_STATIC_INLINE PetscInt PetscIntMultTruncate(PetscInt a,PetscInt b) 24392f18eb33SBarry Smith { 2440bafee8b4SSatish Balay PetscInt64 r; 24412f18eb33SBarry Smith 2442bafee8b4SSatish Balay r = PetscInt64Mult(a,b); 24432f18eb33SBarry Smith if (r > PETSC_MAX_INT - 100) r = PETSC_MAX_INT - 100; 24442f18eb33SBarry Smith return (PetscInt) r; 24452f18eb33SBarry Smith } 24462f18eb33SBarry Smith 2447f91af8c7SBarry Smith /*@C 2448f91af8c7SBarry Smith 2449f91af8c7SBarry Smith PetscIntSumTruncate - Computes the sum of two positive PetscInt and truncates the value to slightly less than the maximal possible value 2450f91af8c7SBarry Smith 2451f91af8c7SBarry Smith Not Collective 2452f91af8c7SBarry Smith 2453f91af8c7SBarry Smith Input Parameter: 2454f91af8c7SBarry Smith + a - the PetscInt value 2455f91af8c7SBarry Smith - b - the second value 2456f91af8c7SBarry Smith 2457390e1bf2SBarry Smith Returns: 2458390e1bf2SBarry Smith the result as a PetscInt value 2459f91af8c7SBarry Smith 2460bafee8b4SSatish Balay Use PetscInt64Mult() to compute the product of two PetscInt as a PetscInt64 2461f91af8c7SBarry Smith Use PetscRealIntMultTruncate() to compute the product of a PetscReal and a PetscInt and truncate to fit a PetscInt 2462f91af8c7SBarry Smith Use PetscIntMultError() to compute the product of two PetscInt if you wish to generate an error if the result will not fit in a PetscInt 2463f91af8c7SBarry Smith 2464f91af8c7SBarry Smith This is used where we compute approximate sizes for workspace and need to insure the workspace is index-able. 2465f91af8c7SBarry Smith 2466f91af8c7SBarry Smith Level: advanced 2467f91af8c7SBarry Smith 2468390e1bf2SBarry Smith .seealso: PetscBLASInt, PetscMPIInt, PetscInt, PetscBLASIntCast(), PetscInt64Mult() 2469f91af8c7SBarry Smith @*/ 2470f91af8c7SBarry Smith PETSC_STATIC_INLINE PetscInt PetscIntSumTruncate(PetscInt a,PetscInt b) 2471f91af8c7SBarry Smith { 2472bafee8b4SSatish Balay PetscInt64 r; 2473f91af8c7SBarry Smith 2474bafee8b4SSatish Balay r = ((PetscInt64)a) + ((PetscInt64)b); 2475f91af8c7SBarry Smith if (r > PETSC_MAX_INT - 100) r = PETSC_MAX_INT - 100; 2476f91af8c7SBarry Smith return (PetscInt) r; 2477f91af8c7SBarry Smith } 2478f91af8c7SBarry Smith 24792f18eb33SBarry Smith /*@C 24802f18eb33SBarry Smith 24812f18eb33SBarry Smith PetscIntMultError - Computes the product of two positive PetscInt and generates an error with overflow. 24822f18eb33SBarry Smith 24832f18eb33SBarry Smith Not Collective 24842f18eb33SBarry Smith 24852f18eb33SBarry Smith Input Parameter: 24862f18eb33SBarry Smith + a - the PetscInt value 24872f18eb33SBarry Smith - b - the second value 24882f18eb33SBarry Smith 24892f18eb33SBarry Smith Output Parameter:ma 2490390e1bf2SBarry Smith . result - the result as a PetscInt value, or NULL if you do not want the result, you just want to check if it overflows 24912f18eb33SBarry Smith 2492bafee8b4SSatish Balay Use PetscInt64Mult() to compute the product of two 32 bit PetscInt and store in a PetscInt64 24932f18eb33SBarry Smith Use PetscIntMultTruncate() to compute the product of two PetscInt and truncate it to fit in a PetscInt 24942f18eb33SBarry Smith 2495220afb94SBarry Smith Developers Note: We currently assume that PetscInt addition does not overflow, this is obviously wrong but requires many more checks. 24962f18eb33SBarry Smith 24972f18eb33SBarry Smith Level: advanced 24982f18eb33SBarry Smith 2499220afb94SBarry Smith .seealso: PetscBLASInt, PetscMPIInt, PetscInt, PetscBLASIntCast(), PetscIntMult64(), PetscIntSumError() 25002f18eb33SBarry Smith @*/ 25012f18eb33SBarry Smith PETSC_STATIC_INLINE PetscErrorCode PetscIntMultError(PetscInt a,PetscInt b,PetscInt *result) 25022f18eb33SBarry Smith { 2503bafee8b4SSatish Balay PetscInt64 r; 25042f18eb33SBarry Smith 25052f18eb33SBarry Smith PetscFunctionBegin; 2506bafee8b4SSatish Balay r = PetscInt64Mult(a,b); 25072f18eb33SBarry Smith #if !defined(PETSC_USE_64BIT_INDICES) 25082f18eb33SBarry Smith if (r > PETSC_MAX_INT) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_SUP,"Product of two integer %d %d overflow, you must ./configure PETSc with --with-64-bit-indices for the case you are running",a,b); 25092f18eb33SBarry Smith #endif 2510f91af8c7SBarry Smith if (result) *result = (PetscInt) r; 2511f91af8c7SBarry Smith PetscFunctionReturn(0); 2512f91af8c7SBarry Smith } 2513f91af8c7SBarry Smith 2514f91af8c7SBarry Smith /*@C 2515f91af8c7SBarry Smith 2516fbfcfee5SBarry Smith PetscIntSumError - Computes the sum of two positive PetscInt and generates an error with overflow. 2517f91af8c7SBarry Smith 2518f91af8c7SBarry Smith Not Collective 2519f91af8c7SBarry Smith 2520f91af8c7SBarry Smith Input Parameter: 2521f91af8c7SBarry Smith + a - the PetscInt value 2522f91af8c7SBarry Smith - b - the second value 2523f91af8c7SBarry Smith 2524f91af8c7SBarry Smith Output Parameter:ma 2525390e1bf2SBarry Smith . c - the result as a PetscInt value, or NULL if you do not want the result, you just want to check if it overflows 2526f91af8c7SBarry Smith 2527bafee8b4SSatish Balay Use PetscInt64Mult() to compute the product of two 32 bit PetscInt and store in a PetscInt64 2528f91af8c7SBarry Smith Use PetscIntMultTruncate() to compute the product of two PetscInt and truncate it to fit in a PetscInt 2529f91af8c7SBarry Smith 2530f91af8c7SBarry Smith Level: advanced 2531f91af8c7SBarry Smith 2532390e1bf2SBarry Smith .seealso: PetscBLASInt, PetscMPIInt, PetscInt, PetscBLASIntCast(), PetscInt64Mult() 2533f91af8c7SBarry Smith @*/ 2534f91af8c7SBarry Smith PETSC_STATIC_INLINE PetscErrorCode PetscIntSumError(PetscInt a,PetscInt b,PetscInt *result) 2535f91af8c7SBarry Smith { 2536bafee8b4SSatish Balay PetscInt64 r; 2537f91af8c7SBarry Smith 2538f91af8c7SBarry Smith PetscFunctionBegin; 2539bafee8b4SSatish Balay r = ((PetscInt64)a) + ((PetscInt64)b); 2540f91af8c7SBarry Smith #if !defined(PETSC_USE_64BIT_INDICES) 2541f91af8c7SBarry Smith if (r > PETSC_MAX_INT) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_SUP,"Sum of two integer %d %d overflow, you must ./configure PETSc with --with-64-bit-indices for the case you are running",a,b); 2542f91af8c7SBarry Smith #endif 2543f91af8c7SBarry Smith if (result) *result = (PetscInt) r; 25442f18eb33SBarry Smith PetscFunctionReturn(0); 25452f18eb33SBarry Smith } 2546c5df96a5SBarry Smith 2547d382aafbSBarry Smith /* 25482981ebdbSBarry Smith The IBM include files define hz, here we hide it so that it may be used as a regular user variable. 2549d382aafbSBarry Smith */ 2550d382aafbSBarry Smith #if defined(hz) 2551d382aafbSBarry Smith #undef hz 2552d382aafbSBarry Smith #endif 2553d382aafbSBarry Smith 2554d382aafbSBarry Smith /* For arrays that contain filenames or paths */ 2555d382aafbSBarry Smith 2556d382aafbSBarry Smith 2557d382aafbSBarry Smith #if defined(PETSC_HAVE_LIMITS_H) 2558d382aafbSBarry Smith #include <limits.h> 2559d382aafbSBarry Smith #endif 2560d382aafbSBarry Smith #if defined(PETSC_HAVE_SYS_PARAM_H) 2561d382aafbSBarry Smith #include <sys/param.h> 2562d382aafbSBarry Smith #endif 2563d382aafbSBarry Smith #if defined(PETSC_HAVE_SYS_TYPES_H) 2564d382aafbSBarry Smith #include <sys/types.h> 2565d382aafbSBarry Smith #endif 2566d382aafbSBarry Smith #if defined(MAXPATHLEN) 2567d382aafbSBarry Smith # define PETSC_MAX_PATH_LEN MAXPATHLEN 2568d382aafbSBarry Smith #elif defined(MAX_PATH) 2569d382aafbSBarry Smith # define PETSC_MAX_PATH_LEN MAX_PATH 2570d382aafbSBarry Smith #elif defined(_MAX_PATH) 2571d382aafbSBarry Smith # define PETSC_MAX_PATH_LEN _MAX_PATH 2572d382aafbSBarry Smith #else 2573d382aafbSBarry Smith # define PETSC_MAX_PATH_LEN 4096 2574d382aafbSBarry Smith #endif 2575d382aafbSBarry Smith 2576d382aafbSBarry Smith /*MC 2577d382aafbSBarry Smith 257866d79e26SBarry Smith PETSC_VERSION - This manual page provides information about how PETSc documents and uses its version information. This information is available to both C/C++ 257966d79e26SBarry Smith and Fortran compilers when petscsys.h is included. 258066d79e26SBarry Smith 258166d79e26SBarry Smith 258266d79e26SBarry Smith The current PETSc version and the API for accessing it are defined in petscversion.h 258366d79e26SBarry Smith 258466d79e26SBarry Smith The complete version number is given as the triple PETSC_VERSION_MAJOR.PETSC_VERSION_MINOR.PETSC_VERSION_SUBMINOR (in short hand x.y.z) 258566d79e26SBarry Smith 258666d79e26SBarry Smith A change in the minor version number (y) indicates possible/likely changes in the PETSc API. Note this is different than with the semantic versioning convention 258766d79e26SBarry Smith where only a change in the major version number (x) indicates a change in the API. 258866d79e26SBarry Smith 258966d79e26SBarry Smith A subminor greater than zero indicates a patch release. Version x.y.z maintains source and binary compatibility with version x.y.w for all z and w 259066d79e26SBarry Smith 259166d79e26SBarry Smith Use the macros PETSC_VERSION_EQ(x,y,z), PETSC_VERSION_LT(x,y,z), PETSC_VERSION_LE(x,y,z), PETSC_VERSION_GT(x,y,z), 259266d79e26SBarry Smith PETSC_VERSION_GE(x,y,z) to determine if the current version is equal to, less than, less than or equal to, greater than or greater than or equal to a given 259366d79e26SBarry Smith version number (x.y.z). 259466d79e26SBarry Smith 259566d79e26SBarry Smith PETSC_RELEASE_DATE is the date the x.y version was released (i.e. the version before any patch releases) 259666d79e26SBarry Smith 259766d79e26SBarry Smith PETSC_VERSION_DATE is the date the x.y.z version was released 259866d79e26SBarry Smith 259966d79e26SBarry Smith PETSC_VERSION_GIT is the last git commit to the repository given in the form vx.y.z-wwwww 260066d79e26SBarry Smith 260166d79e26SBarry Smith PETSC_VERSION_DATE_GIT is the date of the last git commit to the repository 260266d79e26SBarry Smith 260366d79e26SBarry Smith Level: intermediate 260466d79e26SBarry Smith 260566d79e26SBarry Smith PETSC_VERSION_() and PETSC_VERSION_PATCH are deprecated and will eventually be removed. For several releases PETSC_VERSION_PATCH is always 0 260666d79e26SBarry Smith 260766d79e26SBarry Smith M*/ 260866d79e26SBarry Smith 260966d79e26SBarry Smith /*MC 261066d79e26SBarry Smith 26111b266c99SBarry Smith UsingFortran - To use PETSc with Fortran you must use both PETSc include files and modules. At the beginning 26121b266c99SBarry Smith of every function and module definition you need something like 2613d382aafbSBarry Smith 2614d382aafbSBarry Smith $ 2615af0996ceSBarry Smith $#include "petsc/finclude/petscXXX.h" 26160f665fc7SPatrick Sanan $ use petscXXX 26171b266c99SBarry Smith 2618692afcd8SPatrick Sanan You can declare PETSc variables using either of the following. 26191b266c99SBarry Smith 2620d382aafbSBarry Smith $ XXX variablename 26211b266c99SBarry Smith $ type(tXXX) variablename 26221b266c99SBarry Smith 2623692afcd8SPatrick Sanan For example, 26241b266c99SBarry Smith 2625bfc4c25eSBarry Smith $#include "petsc/finclude/petscvec.h" 26261b266c99SBarry Smith $ use petscvec 2627d382aafbSBarry Smith $ 2628692afcd8SPatrick Sanan $ Vec b 2629692afcd8SPatrick Sanan $ type(tVec) x 2630d382aafbSBarry Smith 2631d382aafbSBarry Smith Level: beginner 2632d382aafbSBarry Smith 2633d382aafbSBarry Smith M*/ 2634d382aafbSBarry Smith 2635014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetArchType(char[],size_t); 2636014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetHostName(char[],size_t); 2637014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetUserName(char[],size_t); 2638014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetProgramName(char[],size_t); 2639014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSetProgramName(const char[]); 2640014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetDate(char[],size_t); 264127710113SBarry Smith PETSC_EXTERN PetscErrorCode PetscGetVersion(char[], size_t); 26425f309d01SBarry Smith PETSC_EXTERN PetscErrorCode PetscGetVersionNumber(PetscInt*,PetscInt*,PetscInt*,PetscInt*); 2643d382aafbSBarry Smith 2644014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortInt(PetscInt,PetscInt[]); 264522ab5688SLisandro Dalcin PETSC_EXTERN PetscErrorCode PetscSortedRemoveDupsInt(PetscInt*,PetscInt[]); 2646014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortRemoveDupsInt(PetscInt*,PetscInt[]); 264760e03357SMatthew G Knepley PETSC_EXTERN PetscErrorCode PetscFindInt(PetscInt, PetscInt, const PetscInt[], PetscInt*); 2648d2aeb606SJed Brown PETSC_EXTERN PetscErrorCode PetscFindMPIInt(PetscMPIInt, PetscInt, const PetscMPIInt[], PetscInt*); 2649014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortIntWithPermutation(PetscInt,const PetscInt[],PetscInt[]); 2650014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortStrWithPermutation(PetscInt,const char*[],PetscInt[]); 2651014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortIntWithArray(PetscInt,PetscInt[],PetscInt[]); 26526c2863d0SBarry Smith PETSC_EXTERN PetscErrorCode PetscSortIntWithArrayPair(PetscInt,PetscInt[],PetscInt[],PetscInt[]); 265317d7d925SStefano Zampini PETSC_EXTERN PetscErrorCode PetscSortMPIInt(PetscInt,PetscMPIInt[]); 265417d7d925SStefano Zampini PETSC_EXTERN PetscErrorCode PetscSortRemoveDupsMPIInt(PetscInt*,PetscMPIInt[]); 2655014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortMPIIntWithArray(PetscMPIInt,PetscMPIInt[],PetscMPIInt[]); 2656014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortIntWithScalarArray(PetscInt,PetscInt[],PetscScalar[]); 265717df18f2SToby Isaac PETSC_EXTERN PetscErrorCode PetscSortIntWithDataArray(PetscInt,PetscInt[],void*,size_t,void*); 2658014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortReal(PetscInt,PetscReal[]); 265939f41f7fSStefano Zampini PETSC_EXTERN PetscErrorCode PetscSortRealWithArrayInt(PetscInt,PetscReal[],PetscInt[]); 2660014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortRealWithPermutation(PetscInt,const PetscReal[],PetscInt[]); 2661745b41b2SMatthew G. Knepley PETSC_EXTERN PetscErrorCode PetscSortRemoveDupsReal(PetscInt*,PetscReal[]); 266239f41f7fSStefano Zampini PETSC_EXTERN PetscErrorCode PetscFindReal(PetscReal,PetscInt,const PetscReal[],PetscReal,PetscInt*); 2663014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortSplit(PetscInt,PetscInt,PetscScalar[],PetscInt[]); 2664014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortSplitReal(PetscInt,PetscInt,PetscReal[],PetscInt[]); 2665014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscProcessTree(PetscInt,const PetscBool [],const PetscInt[],PetscInt*,PetscInt**,PetscInt**,PetscInt**,PetscInt**); 26666c2863d0SBarry Smith PETSC_EXTERN PetscErrorCode PetscMergeIntArrayPair(PetscInt,const PetscInt[],const PetscInt[],PetscInt,const PetscInt[],const PetscInt[],PetscInt*,PetscInt**,PetscInt**); 26676c2863d0SBarry Smith PETSC_EXTERN PetscErrorCode PetscMergeIntArray(PetscInt,const PetscInt[],PetscInt,const PetscInt[],PetscInt*,PetscInt**); 2668e498c390SJed Brown PETSC_EXTERN PetscErrorCode PetscMergeMPIIntArray(PetscInt,const PetscMPIInt[],PetscInt,const PetscMPIInt[],PetscInt*,PetscMPIInt**); 2669d382aafbSBarry Smith 2670014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSetDisplay(void); 2671014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetDisplay(char[],size_t); 2672d382aafbSBarry Smith 267376bdecfbSBarry Smith /*J 2674d382aafbSBarry Smith PetscRandomType - String with the name of a PETSc randomizer 2675d382aafbSBarry Smith 2676d382aafbSBarry Smith Level: beginner 2677d382aafbSBarry Smith 2678e28ce29aSPatrick Sanan Notes: 2679e28ce29aSPatrick Sanan To use SPRNG or RANDOM123 you must have ./configure PETSc 268025ccb61fSToby Isaac with the option --download-sprng or --download-random123 2681d382aafbSBarry Smith 26828f6c3df8SBarry Smith .seealso: PetscRandomSetType(), PetscRandom, PetscRandomCreate() 268376bdecfbSBarry Smith J*/ 268419fd82e9SBarry Smith typedef const char* PetscRandomType; 2685d382aafbSBarry Smith #define PETSCRAND "rand" 2686d382aafbSBarry Smith #define PETSCRAND48 "rand48" 2687d382aafbSBarry Smith #define PETSCSPRNG "sprng" 2688c5e4d11fSDmitry Karpeev #define PETSCRANDER48 "rander48" 268925ccb61fSToby Isaac #define PETSCRANDOM123 "random123" 2690d382aafbSBarry Smith 2691d382aafbSBarry Smith /* Logging support */ 2692014dd563SJed Brown PETSC_EXTERN PetscClassId PETSC_RANDOM_CLASSID; 2693d382aafbSBarry Smith 2694607a6623SBarry Smith PETSC_EXTERN PetscErrorCode PetscRandomInitializePackage(void); 2695d382aafbSBarry Smith 2696d382aafbSBarry Smith /*S 2697d382aafbSBarry Smith PetscRandom - Abstract PETSc object that manages generating random numbers 2698d382aafbSBarry Smith 2699d382aafbSBarry Smith Level: intermediate 2700d382aafbSBarry Smith 2701d382aafbSBarry Smith Concepts: random numbers 2702d382aafbSBarry Smith 2703d382aafbSBarry Smith .seealso: PetscRandomCreate(), PetscRandomGetValue(), PetscRandomType 2704d382aafbSBarry Smith S*/ 2705d382aafbSBarry Smith typedef struct _p_PetscRandom* PetscRandom; 2706d382aafbSBarry Smith 2707d382aafbSBarry Smith /* Dynamic creation and loading functions */ 2708140e18c1SBarry Smith PETSC_EXTERN PetscFunctionList PetscRandomList; 2709d382aafbSBarry Smith 2710bdf89e91SBarry Smith PETSC_EXTERN PetscErrorCode PetscRandomRegister(const char[],PetscErrorCode (*)(PetscRandom)); 271119fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode PetscRandomSetType(PetscRandom, PetscRandomType); 2712014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomSetFromOptions(PetscRandom); 271319fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode PetscRandomGetType(PetscRandom, PetscRandomType*); 2714685405a1SBarry Smith PETSC_STATIC_INLINE PetscErrorCode PetscRandomViewFromOptions(PetscRandom A,PetscObject obj,const char name[]) {return PetscObjectViewFromOptions((PetscObject)A,obj,name);} 2715014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomView(PetscRandom,PetscViewer); 2716d382aafbSBarry Smith 2717014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomCreate(MPI_Comm,PetscRandom*); 2718014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomGetValue(PetscRandom,PetscScalar*); 2719014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomGetValueReal(PetscRandom,PetscReal*); 2720014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomGetInterval(PetscRandom,PetscScalar*,PetscScalar*); 2721014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomSetInterval(PetscRandom,PetscScalar,PetscScalar); 2722014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomSetSeed(PetscRandom,unsigned long); 2723014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomGetSeed(PetscRandom,unsigned long *); 2724014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomSeed(PetscRandom); 2725014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomDestroy(PetscRandom*); 2726d382aafbSBarry Smith 2727014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetFullPath(const char[],char[],size_t); 2728014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetRelativePath(const char[],char[],size_t); 2729014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetWorkingDirectory(char[],size_t); 2730014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetRealPath(const char[],char[]); 2731014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetHomeDirectory(char[],size_t); 2732014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscTestFile(const char[],char,PetscBool *); 2733014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscTestDirectory(const char[],char,PetscBool *); 273497540f07SSatish Balay PETSC_EXTERN PetscErrorCode PetscMkdir(const char[]); 273597540f07SSatish Balay PETSC_EXTERN PetscErrorCode PetscRMTree(const char[]); 2736d382aafbSBarry Smith 2737014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBinaryRead(int,void*,PetscInt,PetscDataType); 2738014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBinarySynchronizedRead(MPI_Comm,int,void*,PetscInt,PetscDataType); 2739014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBinarySynchronizedWrite(MPI_Comm,int,void*,PetscInt,PetscDataType,PetscBool ); 2740014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBinaryWrite(int,void*,PetscInt,PetscDataType,PetscBool ); 2741014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBinaryOpen(const char[],PetscFileMode,int *); 2742014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBinaryClose(int); 2743014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSharedTmp(MPI_Comm,PetscBool *); 2744014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSharedWorkingDirectory(MPI_Comm,PetscBool *); 2745014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetTmp(MPI_Comm,char[],size_t); 2746014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFileRetrieve(MPI_Comm,const char[],char[],size_t,PetscBool *); 2747014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscLs(MPI_Comm,const char[],char[],size_t,PetscBool *); 2748c891a504SStefano Zampini #if defined(PETSC_USE_SOCKET_VIEWER) 2749e2fc02c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscOpenSocket(const char[],int,int*); 2750c891a504SStefano Zampini #endif 2751d382aafbSBarry Smith 2752d382aafbSBarry Smith /* 2753d382aafbSBarry Smith In binary files variables are stored using the following lengths, 2754d382aafbSBarry Smith regardless of how they are stored in memory on any one particular 2755d382aafbSBarry Smith machine. Use these rather then sizeof() in computing sizes for 2756d382aafbSBarry Smith PetscBinarySeek(). 2757d382aafbSBarry Smith */ 2758d382aafbSBarry Smith #define PETSC_BINARY_INT_SIZE (32/8) 2759d382aafbSBarry Smith #define PETSC_BINARY_FLOAT_SIZE (32/8) 2760d382aafbSBarry Smith #define PETSC_BINARY_CHAR_SIZE (8/8) 2761d382aafbSBarry Smith #define PETSC_BINARY_SHORT_SIZE (16/8) 2762d382aafbSBarry Smith #define PETSC_BINARY_DOUBLE_SIZE (64/8) 2763d382aafbSBarry Smith #define PETSC_BINARY_SCALAR_SIZE sizeof(PetscScalar) 2764d382aafbSBarry Smith 2765d382aafbSBarry Smith /*E 2766d382aafbSBarry Smith PetscBinarySeekType - argument to PetscBinarySeek() 2767d382aafbSBarry Smith 2768d382aafbSBarry Smith Level: advanced 2769d382aafbSBarry Smith 2770d382aafbSBarry Smith .seealso: PetscBinarySeek(), PetscBinarySynchronizedSeek() 2771d382aafbSBarry Smith E*/ 2772d382aafbSBarry Smith typedef enum {PETSC_BINARY_SEEK_SET = 0,PETSC_BINARY_SEEK_CUR = 1,PETSC_BINARY_SEEK_END = 2} PetscBinarySeekType; 2773014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBinarySeek(int,off_t,PetscBinarySeekType,off_t*); 2774014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBinarySynchronizedSeek(MPI_Comm,int,off_t,PetscBinarySeekType,off_t*); 2775014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscByteSwap(void *,PetscDataType,PetscInt); 2776d382aafbSBarry Smith 2777014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSetDebugTerminal(const char[]); 2778014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSetDebugger(const char[],PetscBool ); 2779014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSetDefaultDebugger(void); 2780014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSetDebuggerFromString(const char*); 2781014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscAttachDebugger(void); 2782014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStopForDebugger(void); 2783d382aafbSBarry Smith 2784014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGatherNumberOfMessages(MPI_Comm,const PetscMPIInt[],const PetscMPIInt[],PetscMPIInt*); 2785014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGatherMessageLengths(MPI_Comm,PetscMPIInt,PetscMPIInt,const PetscMPIInt[],PetscMPIInt**,PetscMPIInt**); 2786014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGatherMessageLengths2(MPI_Comm,PetscMPIInt,PetscMPIInt,const PetscMPIInt[],const PetscMPIInt[],PetscMPIInt**,PetscMPIInt**,PetscMPIInt**); 2787014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPostIrecvInt(MPI_Comm,PetscMPIInt,PetscMPIInt,const PetscMPIInt[],const PetscMPIInt[],PetscInt***,MPI_Request**); 2788014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPostIrecvScalar(MPI_Comm,PetscMPIInt,PetscMPIInt,const PetscMPIInt[],const PetscMPIInt[],PetscScalar***,MPI_Request**); 2789cf4b5b4fSJed Brown PETSC_EXTERN PetscErrorCode PetscCommBuildTwoSided(MPI_Comm,PetscMPIInt,MPI_Datatype,PetscMPIInt,const PetscMPIInt*,const void*,PetscMPIInt*,PetscMPIInt**,void*) 2790cf4b5b4fSJed Brown PetscAttrMPIPointerWithType(6,3); 2791d815da10SJed Brown PETSC_EXTERN PetscErrorCode PetscCommBuildTwoSidedF(MPI_Comm,PetscMPIInt,MPI_Datatype,PetscMPIInt,const PetscMPIInt[],const void*,PetscMPIInt*,PetscMPIInt**,void*,PetscMPIInt, 2792d815da10SJed Brown PetscErrorCode (*send)(MPI_Comm,const PetscMPIInt[],PetscMPIInt,PetscMPIInt,void*,MPI_Request[],void*), 2793d815da10SJed Brown PetscErrorCode (*recv)(MPI_Comm,const PetscMPIInt[],PetscMPIInt,void*,MPI_Request[],void*),void *ctx) 2794d815da10SJed Brown PetscAttrMPIPointerWithType(6,3); 27956afbe7ddSJed Brown PETSC_EXTERN PetscErrorCode PetscCommBuildTwoSidedFReq(MPI_Comm,PetscMPIInt,MPI_Datatype,PetscMPIInt,const PetscMPIInt[],const void*,PetscMPIInt*,PetscMPIInt**,void*,PetscMPIInt, 27966afbe7ddSJed Brown MPI_Request**,MPI_Request**, 27976afbe7ddSJed Brown PetscErrorCode (*send)(MPI_Comm,const PetscMPIInt[],PetscMPIInt,PetscMPIInt,void*,MPI_Request[],void*), 27986afbe7ddSJed Brown PetscErrorCode (*recv)(MPI_Comm,const PetscMPIInt[],PetscMPIInt,void*,MPI_Request[],void*),void *ctx) 27996afbe7ddSJed Brown PetscAttrMPIPointerWithType(6,3); 2800d382aafbSBarry Smith 28016145cd65SJed Brown /*E 28026145cd65SJed Brown PetscBuildTwoSidedType - algorithm for setting up two-sided communication 28036145cd65SJed Brown 28046145cd65SJed Brown $ PETSC_BUILDTWOSIDED_ALLREDUCE - classical algorithm using an MPI_Allreduce with 28056145cd65SJed Brown $ a buffer of length equal to the communicator size. Not memory-scalable due to 28066145cd65SJed Brown $ the large reduction size. Requires only MPI-1. 28076145cd65SJed Brown $ PETSC_BUILDTWOSIDED_IBARRIER - nonblocking algorithm based on MPI_Issend and MPI_Ibarrier. 28086145cd65SJed Brown $ Proved communication-optimal in Hoefler, Siebert, and Lumsdaine (2010). Requires MPI-3. 28091654bf6bSJed Brown $ PETSC_BUILDTWOSIDED_REDSCATTER - similar to above, but use more optimized function 28101654bf6bSJed Brown $ that only communicates the part of the reduction that is necessary. Requires MPI-2. 28116145cd65SJed Brown 28126145cd65SJed Brown Level: developer 28136145cd65SJed Brown 28146145cd65SJed Brown .seealso: PetscCommBuildTwoSided(), PetscCommBuildTwoSidedSetType(), PetscCommBuildTwoSidedGetType() 28156145cd65SJed Brown E*/ 28166145cd65SJed Brown typedef enum { 28176145cd65SJed Brown PETSC_BUILDTWOSIDED_NOTSET = -1, 28186145cd65SJed Brown PETSC_BUILDTWOSIDED_ALLREDUCE = 0, 28191654bf6bSJed Brown PETSC_BUILDTWOSIDED_IBARRIER = 1, 282012af867fSJed Brown PETSC_BUILDTWOSIDED_REDSCATTER = 2 28216145cd65SJed Brown /* Updates here must be accompanied by updates in finclude/petscsys.h and the string array in mpits.c */ 28226145cd65SJed Brown } PetscBuildTwoSidedType; 28236145cd65SJed Brown PETSC_EXTERN const char *const PetscBuildTwoSidedTypes[]; 28246145cd65SJed Brown PETSC_EXTERN PetscErrorCode PetscCommBuildTwoSidedSetType(MPI_Comm,PetscBuildTwoSidedType); 28256145cd65SJed Brown PETSC_EXTERN PetscErrorCode PetscCommBuildTwoSidedGetType(MPI_Comm,PetscBuildTwoSidedType*); 28266145cd65SJed Brown 2827014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSSEIsEnabled(MPI_Comm,PetscBool *,PetscBool *); 2828d382aafbSBarry Smith 2829d382aafbSBarry Smith /*E 2830d382aafbSBarry Smith InsertMode - Whether entries are inserted or added into vectors or matrices 2831d382aafbSBarry Smith 2832d382aafbSBarry Smith Level: beginner 2833d382aafbSBarry Smith 2834d382aafbSBarry Smith .seealso: VecSetValues(), MatSetValues(), VecSetValue(), VecSetValuesBlocked(), 2835d382aafbSBarry Smith VecSetValuesLocal(), VecSetValuesBlockedLocal(), MatSetValuesBlocked(), 2836d382aafbSBarry Smith MatSetValuesBlockedLocal(), MatSetValuesLocal(), VecScatterBegin(), VecScatterEnd() 2837d382aafbSBarry Smith E*/ 28386fbadbe2SMatthew G Knepley typedef enum {NOT_SET_VALUES, INSERT_VALUES, ADD_VALUES, MAX_VALUES, INSERT_ALL_VALUES, ADD_ALL_VALUES, INSERT_BC_VALUES, ADD_BC_VALUES} InsertMode; 2839d382aafbSBarry Smith 2840d382aafbSBarry Smith /*MC 2841d382aafbSBarry Smith INSERT_VALUES - Put a value into a vector or matrix, overwrites any previous value 2842d382aafbSBarry Smith 2843d382aafbSBarry Smith Level: beginner 2844d382aafbSBarry Smith 2845d382aafbSBarry Smith .seealso: InsertMode, VecSetValues(), MatSetValues(), VecSetValue(), VecSetValuesBlocked(), 2846eca87e8dSBarry Smith VecSetValuesLocal(), VecSetValuesBlockedLocal(), MatSetValuesBlocked(), ADD_VALUES, 2847eca87e8dSBarry Smith MatSetValuesBlockedLocal(), MatSetValuesLocal(), VecScatterBegin(), VecScatterEnd(), MAX_VALUES 2848d382aafbSBarry Smith 2849d382aafbSBarry Smith M*/ 2850d382aafbSBarry Smith 2851d382aafbSBarry Smith /*MC 2852d382aafbSBarry Smith ADD_VALUES - Adds a value into a vector or matrix, if there previously was no value, just puts the 2853d382aafbSBarry Smith value into that location 2854d382aafbSBarry Smith 2855d382aafbSBarry Smith Level: beginner 2856d382aafbSBarry Smith 2857d382aafbSBarry Smith .seealso: InsertMode, VecSetValues(), MatSetValues(), VecSetValue(), VecSetValuesBlocked(), 2858eca87e8dSBarry Smith VecSetValuesLocal(), VecSetValuesBlockedLocal(), MatSetValuesBlocked(), INSERT_VALUES, 2859eca87e8dSBarry Smith MatSetValuesBlockedLocal(), MatSetValuesLocal(), VecScatterBegin(), VecScatterEnd(), MAX_VALUES 2860d382aafbSBarry Smith 2861d382aafbSBarry Smith M*/ 2862d382aafbSBarry Smith 2863d382aafbSBarry Smith /*MC 2864d382aafbSBarry Smith MAX_VALUES - Puts the maximum of the scattered/gathered value and the current value into each location 2865d382aafbSBarry Smith 2866d382aafbSBarry Smith Level: beginner 2867d382aafbSBarry Smith 2868d382aafbSBarry Smith .seealso: InsertMode, VecScatterBegin(), VecScatterEnd(), ADD_VALUES, INSERT_VALUES 2869d382aafbSBarry Smith 2870d382aafbSBarry Smith M*/ 2871d382aafbSBarry Smith 2872ce94432eSBarry Smith PETSC_EXTERN MPI_Comm PetscObjectComm(PetscObject); 2873ce94432eSBarry Smith 287445487dadSJed Brown typedef enum {PETSC_SUBCOMM_GENERAL=0,PETSC_SUBCOMM_CONTIGUOUS=1,PETSC_SUBCOMM_INTERLACED=2} PetscSubcommType; 287545487dadSJed Brown PETSC_EXTERN const char *const PetscSubcommTypes[]; 287645487dadSJed Brown 2877d382aafbSBarry Smith /*S 2878306c2d5bSBarry Smith PetscSubcomm - A decomposition of an MPI communicator into subcommunicators 2879306c2d5bSBarry Smith 2880e28ce29aSPatrick Sanan Notes: 2881e28ce29aSPatrick Sanan After a call to PetscSubcommSetType(), PetscSubcommSetTypeGeneral(), or PetscSubcommSetFromOptions() one may call 2882306c2d5bSBarry Smith $ PetscSubcommChild() returns the associated subcommunicator on this process 28833bf92927SBarry Smith $ PetscSubcommContiguousParent() returns a parent communitor but with all child of the same subcommunicator having contiguous rank 2884306c2d5bSBarry Smith 2885306c2d5bSBarry Smith Sample Usage: 2886306c2d5bSBarry Smith PetscSubcommCreate() 2887306c2d5bSBarry Smith PetscSubcommSetNumber() 2888306c2d5bSBarry Smith PetscSubcommSetType(PETSC_SUBCOMM_INTERLACED); 2889306c2d5bSBarry Smith ccomm = PetscSubcommChild() 2890306c2d5bSBarry Smith PetscSubcommDestroy() 2891d382aafbSBarry Smith 2892d382aafbSBarry Smith Level: advanced 2893d382aafbSBarry Smith 2894d382aafbSBarry Smith Concepts: communicator, create 2895306c2d5bSBarry Smith 2896306c2d5bSBarry Smith Notes: 2897306c2d5bSBarry Smith $ PETSC_SUBCOMM_GENERAL - similar to MPI_Comm_split() each process sets the new communicator (color) they will belong to and the order within that communicator 28983bf92927SBarry Smith $ PETSC_SUBCOMM_CONTIGUOUS - each new communicator contains a set of process with contiguous ranks in the original MPI communicator 2899306c2d5bSBarry Smith $ PETSC_SUBCOMM_INTERLACED - each new communictor contains a set of processes equally far apart in rank from the others in that new communicator 2900306c2d5bSBarry Smith 2901e28ce29aSPatrick Sanan Example: Consider a communicator with six processes split into 3 subcommunicators. 2902306c2d5bSBarry Smith $ PETSC_SUBCOMM_CONTIGUOUS - the first communicator contains rank 0,1 the second rank 2,3 and the third rank 4,5 in the original ordering of the original communicator 2903306c2d5bSBarry Smith $ PETSC_SUBCOMM_INTERLACED - the first communicator contains rank 0,3, the second 1,4 and the third 2,5 2904306c2d5bSBarry Smith 2905e28ce29aSPatrick Sanan Developer Notes: 2906e28ce29aSPatrick Sanan This is used in objects such as PCREDUNDANT to manage the subcommunicators on which the redundant computations 2907306c2d5bSBarry Smith are performed. 2908306c2d5bSBarry Smith 2909306c2d5bSBarry Smith 2910306c2d5bSBarry Smith .seealso: PetscSubcommCreate(), PetscSubcommSetNumber(), PetscSubcommSetType(), PetscSubcommView(), PetscSubcommSetFromOptions() 2911306c2d5bSBarry Smith 2912d382aafbSBarry Smith S*/ 2913d382aafbSBarry Smith typedef struct _n_PetscSubcomm* PetscSubcomm; 2914d382aafbSBarry Smith 2915d382aafbSBarry Smith struct _n_PetscSubcomm { 2916d382aafbSBarry Smith MPI_Comm parent; /* parent communicator */ 2917d382aafbSBarry Smith MPI_Comm dupparent; /* duplicate parent communicator, under which the processors of this subcomm have contiguous rank */ 2918306c2d5bSBarry Smith MPI_Comm child; /* the sub-communicator */ 291945487dadSJed Brown PetscMPIInt n; /* num of subcommunicators under the parent communicator */ 292045487dadSJed Brown PetscMPIInt color; /* color of processors belong to this communicator */ 2921708d824cSJed Brown PetscMPIInt *subsize; /* size of subcommunicator[color] */ 292245487dadSJed Brown PetscSubcommType type; 2923e5acf8a4SHong Zhang char *subcommprefix; 2924d382aafbSBarry Smith }; 2925d382aafbSBarry Smith 2926c5e4d11fSDmitry Karpeev PETSC_STATIC_INLINE MPI_Comm PetscSubcommParent(PetscSubcomm scomm) {return scomm->parent;} 2927306c2d5bSBarry Smith PETSC_STATIC_INLINE MPI_Comm PetscSubcommChild(PetscSubcomm scomm) {return scomm->child;} 292836be1a5eSBarry Smith PETSC_STATIC_INLINE MPI_Comm PetscSubcommContiguousParent(PetscSubcomm scomm) {return scomm->dupparent;} 2929014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSubcommCreate(MPI_Comm,PetscSubcomm*); 2930014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSubcommDestroy(PetscSubcomm*); 2931014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSubcommSetNumber(PetscSubcomm,PetscInt); 2932014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSubcommSetType(PetscSubcomm,PetscSubcommType); 293365d9b8f1SHong Zhang PETSC_EXTERN PetscErrorCode PetscSubcommSetTypeGeneral(PetscSubcomm,PetscMPIInt,PetscMPIInt); 2934053d1c95SHong Zhang PETSC_EXTERN PetscErrorCode PetscSubcommView(PetscSubcomm,PetscViewer); 2935f68be91cSHong Zhang PETSC_EXTERN PetscErrorCode PetscSubcommSetFromOptions(PetscSubcomm); 2936e5acf8a4SHong Zhang PETSC_EXTERN PetscErrorCode PetscSubcommSetOptionsPrefix(PetscSubcomm,const char[]); 2937d382aafbSBarry Smith 29380f453b92SJed Brown /*S 29399962606eSBarry Smith PetscHeap - A simple class for managing heaps 29409962606eSBarry Smith 29419962606eSBarry Smith Level: intermediate 29429962606eSBarry Smith 29439962606eSBarry Smith Concepts: random numbers 29449962606eSBarry Smith 29459962606eSBarry Smith .seealso: PetscHeapCreate(), PetscHeapAdd(), PetscHeapPop(), PetscHeapPeek(), PetscHeapStash(), PetscHeapUnstash(), PetscHeapView(), PetscHeapDestroy() 29469962606eSBarry Smith S*/ 29479962606eSBarry Smith typedef struct _PetscHeap *PetscHeap; 29489962606eSBarry Smith 29499962606eSBarry Smith PETSC_EXTERN PetscErrorCode PetscHeapCreate(PetscInt,PetscHeap*); 29509962606eSBarry Smith PETSC_EXTERN PetscErrorCode PetscHeapAdd(PetscHeap,PetscInt,PetscInt); 29519962606eSBarry Smith PETSC_EXTERN PetscErrorCode PetscHeapPop(PetscHeap,PetscInt*,PetscInt*); 29529962606eSBarry Smith PETSC_EXTERN PetscErrorCode PetscHeapPeek(PetscHeap,PetscInt*,PetscInt*); 29539962606eSBarry Smith PETSC_EXTERN PetscErrorCode PetscHeapStash(PetscHeap,PetscInt,PetscInt); 29549962606eSBarry Smith PETSC_EXTERN PetscErrorCode PetscHeapUnstash(PetscHeap); 29559962606eSBarry Smith PETSC_EXTERN PetscErrorCode PetscHeapDestroy(PetscHeap*); 29569962606eSBarry Smith PETSC_EXTERN PetscErrorCode PetscHeapView(PetscHeap,PetscViewer); 29579962606eSBarry Smith 29589962606eSBarry Smith /*S 29590f453b92SJed Brown PetscSegBuffer - a segmented extendable buffer 29600f453b92SJed Brown 29610f453b92SJed Brown Level: developer 29620f453b92SJed Brown 29630f453b92SJed Brown .seealso: PetscSegBufferCreate(), PetscSegBufferGet(), PetscSegBufferExtract(), PetscSegBufferDestroy() 29640f453b92SJed Brown S*/ 29650f453b92SJed Brown typedef struct _n_PetscSegBuffer *PetscSegBuffer; 296613e3f751SJed Brown PETSC_EXTERN PetscErrorCode PetscSegBufferCreate(size_t,size_t,PetscSegBuffer*); 29670f453b92SJed Brown PETSC_EXTERN PetscErrorCode PetscSegBufferDestroy(PetscSegBuffer*); 296813e3f751SJed Brown PETSC_EXTERN PetscErrorCode PetscSegBufferGet(PetscSegBuffer,size_t,void*); 2969137cf7b6SJed Brown PETSC_EXTERN PetscErrorCode PetscSegBufferExtractAlloc(PetscSegBuffer,void*); 2970137cf7b6SJed Brown PETSC_EXTERN PetscErrorCode PetscSegBufferExtractTo(PetscSegBuffer,void*); 2971137cf7b6SJed Brown PETSC_EXTERN PetscErrorCode PetscSegBufferExtractInPlace(PetscSegBuffer,void*); 297213e3f751SJed Brown PETSC_EXTERN PetscErrorCode PetscSegBufferGetSize(PetscSegBuffer,size_t*); 297313e3f751SJed Brown PETSC_EXTERN PetscErrorCode PetscSegBufferUnuse(PetscSegBuffer,size_t); 29740f453b92SJed Brown 2975471ecdacSJed Brown /* Type-safe wrapper to encourage use of PETSC_RESTRICT. Does not use PetscFunctionBegin because the error handling 2976471ecdacSJed Brown * prevents the compiler from completely erasing the stub. This is called in inner loops so it has to be as fast as 2977471ecdacSJed Brown * possible. */ 297835005c2bSLisandro Dalcin PETSC_STATIC_INLINE PetscErrorCode PetscSegBufferGetInts(PetscSegBuffer seg,PetscInt count,PetscInt *PETSC_RESTRICT *slot) {return PetscSegBufferGet(seg,(size_t)count,(void**)slot);} 2979d382aafbSBarry Smith 29809de0f6ecSBarry Smith typedef struct _n_PetscOptionsHelpPrinted *PetscOptionsHelpPrinted; 29819de0f6ecSBarry Smith extern PetscOptionsHelpPrinted PetscOptionsHelpPrintedSingleton; 29829de0f6ecSBarry Smith PETSC_EXTERN PetscErrorCode PetscOptionsHelpPrintedDestroy(PetscOptionsHelpPrinted*); 29839de0f6ecSBarry Smith PETSC_EXTERN PetscErrorCode PetscOptionsHelpPrintedCreate(PetscOptionsHelpPrinted*); 29849de0f6ecSBarry Smith PETSC_EXTERN PetscErrorCode PetscOptionsHelpPrintedCheck(PetscOptionsHelpPrinted,const char*,const char*,PetscBool*); 29859de0f6ecSBarry Smith 2986268b0dfdSSatish Balay PETSC_EXTERN PetscSegBuffer PetscCitationsList; 2987fbfcfee5SBarry Smith 29881f817a21SBarry Smith /*@C 29891f817a21SBarry Smith PetscCitationsRegister - Register a bibtex item to obtain credit for an implemented algorithm used in the code. 29901f817a21SBarry Smith 29911f817a21SBarry Smith Not Collective - only what is registered on rank 0 of PETSC_COMM_WORLD will be printed 29921f817a21SBarry Smith 29931f817a21SBarry Smith Input Parameters: 29941f817a21SBarry Smith + cite - the bibtex item, formated to displayed on multiple lines nicely 29951f817a21SBarry Smith - set - a boolean variable initially set to PETSC_FALSE; this is used to insure only a single registration of the citation 29961f817a21SBarry Smith 2997850545d0SSatish Balay Level: intermediate 2998850545d0SSatish Balay 29991f817a21SBarry Smith Options Database: 3000063414e0SPatrick Sanan . -citations [filename] - print out the bibtex entries for the given computation 30011f817a21SBarry Smith @*/ 3002dff31646SBarry Smith PETSC_STATIC_INLINE PetscErrorCode PetscCitationsRegister(const char cit[],PetscBool *set) 3003dff31646SBarry Smith { 3004dff31646SBarry Smith size_t len; 3005dff31646SBarry Smith char *vstring; 3006dff31646SBarry Smith PetscErrorCode ierr; 3007dff31646SBarry Smith 30081f817a21SBarry Smith PetscFunctionBegin; 30098d3683fcSBarry Smith if (set && *set) PetscFunctionReturn(0); 3010dff31646SBarry Smith ierr = PetscStrlen(cit,&len);CHKERRQ(ierr); 301135005c2bSLisandro Dalcin ierr = PetscSegBufferGet(PetscCitationsList,len,&vstring);CHKERRQ(ierr); 3012dff31646SBarry Smith ierr = PetscMemcpy(vstring,cit,len);CHKERRQ(ierr); 3013dff31646SBarry Smith if (set) *set = PETSC_TRUE; 30141f817a21SBarry Smith PetscFunctionReturn(0); 3015dff31646SBarry Smith } 3016dff31646SBarry Smith 3017b967cddfSBarry Smith PETSC_EXTERN PetscErrorCode PetscURLShorten(const char[],char[],size_t); 3018fe278a28SBarry Smith PETSC_EXTERN PetscErrorCode PetscGoogleDriveAuthorize(MPI_Comm,char[],char[],size_t); 3019fe278a28SBarry Smith PETSC_EXTERN PetscErrorCode PetscGoogleDriveRefresh(MPI_Comm,const char[],char[],size_t); 3020f044a08eSBarry Smith PETSC_EXTERN PetscErrorCode PetscGoogleDriveUpload(MPI_Comm,const char[],const char []); 3021fe278a28SBarry Smith 3022f044a08eSBarry Smith PETSC_EXTERN PetscErrorCode PetscBoxAuthorize(MPI_Comm,char[],char[],size_t); 3023f044a08eSBarry Smith PETSC_EXTERN PetscErrorCode PetscBoxRefresh(MPI_Comm,const char[],char[],char[],size_t); 3024b967cddfSBarry Smith 302504102261SBarry Smith PETSC_EXTERN PetscErrorCode PetscTextBelt(MPI_Comm,const char[],const char[],PetscBool*); 3026763ec7b1SBarry Smith PETSC_EXTERN PetscErrorCode PetscTellMyCell(MPI_Comm,const char[],const char[],PetscBool*); 3027dff31646SBarry Smith 302868e69593SBarry Smith PETSC_EXTERN PetscErrorCode PetscPullJSONValue(const char[],const char[],char[],size_t,PetscBool*); 30295dc0f0a4SBarry Smith PETSC_EXTERN PetscErrorCode PetscPushJSONValue(char[],const char[],const char[],size_t); 3030d382aafbSBarry Smith 3031b2566f29SBarry Smith 3032b2566f29SBarry Smith #if defined(PETSC_USE_DEBUG) 3033b2566f29SBarry Smith /* 3034b2566f29SBarry Smith Verify that all processes in the communicator have called this from the same line of code 3035b2566f29SBarry Smith */ 30368f5db7efSBarry Smith PETSC_EXTERN PetscErrorCode PetscAllreduceBarrierCheck(MPI_Comm,PetscMPIInt,int,const char*,const char *); 303777a5e07dSBarry Smith 303877a5e07dSBarry Smith /*MC 303977a5e07dSBarry Smith MPIU_Allreduce - a PETSc replacement for MPI_Allreduce() that tries to determine if the call from all the MPI processes occur from the 304077a5e07dSBarry Smith same place in the PETSc code. This helps to detect bugs where different MPI processes follow different code paths 304177a5e07dSBarry Smith resulting in inconsistent and incorrect calls to MPI_Allreduce(). 304277a5e07dSBarry Smith 304377a5e07dSBarry Smith Collective on MPI_Comm 304477a5e07dSBarry Smith 304577a5e07dSBarry Smith Synopsis: 304677a5e07dSBarry Smith #include <petscsys.h> 304777a5e07dSBarry Smith PetscErrorCode MPIU_Allreduce(void *indata,void *outdata,PetscMPIInt count,MPI_Datatype datatype, MPI_Op op, MPI_Comm comm); 304877a5e07dSBarry Smith 304977a5e07dSBarry Smith Input Parameters: 305077a5e07dSBarry Smith + indata - pointer to the input data to be reduced 305177a5e07dSBarry Smith . count - the number of MPI data items in indata and outdata 305277a5e07dSBarry Smith . datatype - the MPI datatype, for example MPI_INT 305377a5e07dSBarry Smith . op - the MPI operation, for example MPI_SUM 305477a5e07dSBarry Smith - comm - the MPI communicator on which the operation occurs 305577a5e07dSBarry Smith 305677a5e07dSBarry Smith Output Parameter: 305777a5e07dSBarry Smith . outdata - the reduced values 305877a5e07dSBarry Smith 3059e28ce29aSPatrick Sanan Notes: 3060e28ce29aSPatrick Sanan In optimized mode this directly calls MPI_Allreduce() 306177a5e07dSBarry Smith 306277a5e07dSBarry Smith Level: developer 306377a5e07dSBarry Smith 306477a5e07dSBarry Smith .seealso: MPI_Allreduce() 306577a5e07dSBarry Smith M*/ 3066fbfcfee5SBarry Smith #define MPIU_Allreduce(a,b,c,d,e,fcomm) (PetscAllreduceBarrierCheck(fcomm,c,__LINE__,PETSC_FUNCTION_NAME,__FILE__) || MPI_Allreduce(a,b,c,d,e,fcomm)) 3067b2566f29SBarry Smith #else 3068b2566f29SBarry Smith #define MPIU_Allreduce(a,b,c,d,e,fcomm) MPI_Allreduce(a,b,c,d,e,fcomm) 3069b2566f29SBarry Smith #endif 3070b2566f29SBarry Smith 3071d382aafbSBarry Smith #endif 3072