1d382aafbSBarry Smith /* 2d382aafbSBarry Smith This is the main PETSc include file (for C and C++). It is included by all 3d382aafbSBarry Smith other PETSc include files, so it almost never has to be specifically included. 4d382aafbSBarry Smith */ 56c7e564aSBarry Smith #if !defined(__PETSCSYS_H) 66c7e564aSBarry Smith #define __PETSCSYS_H 7d382aafbSBarry Smith /* ========================================================================== */ 8d382aafbSBarry Smith /* 9d382aafbSBarry Smith petscconf.h is contained in ${PETSC_ARCH}/include/petscconf.h it is 10d382aafbSBarry Smith found automatically by the compiler due to the -I${PETSC_DIR}/${PETSC_ARCH}/include 11d382aafbSBarry Smith in the conf/variables definition of PETSC_INCLUDE 12d382aafbSBarry Smith */ 13d382aafbSBarry Smith #include "petscconf.h" 14d382aafbSBarry Smith #include "petscfix.h" 15d382aafbSBarry Smith 16d382aafbSBarry Smith /* ========================================================================== */ 17d382aafbSBarry Smith /* 18d382aafbSBarry Smith This facilitates using C version of PETSc from C++ and 19e2e64c6bSBarry Smith C++ version from C. Use --with-c-support --with-clanguage=c++ with ./configure for the latter) 20d382aafbSBarry Smith */ 21d382aafbSBarry Smith #if defined(PETSC_CLANGUAGE_CXX) && !defined(PETSC_USE_EXTERN_CXX) && !defined(__cplusplus) 22d382aafbSBarry Smith #error "PETSc configured with --with-clanguage=c++ and NOT --with-c-support - it can be used only with a C++ compiler" 23d382aafbSBarry Smith #endif 241ec50b02SJed Brown 251ec50b02SJed Brown #if defined(__cplusplus) 261ec50b02SJed Brown # define PETSC_FUNCTION_NAME PETSC_FUNCTION_NAME_CXX 271ec50b02SJed Brown #else 281ec50b02SJed Brown # define PETSC_FUNCTION_NAME PETSC_FUNCTION_NAME_C 291ec50b02SJed Brown #endif 30d382aafbSBarry Smith 31d382aafbSBarry Smith #if defined(PETSC_USE_EXTERN_CXX) && defined(__cplusplus) 32d382aafbSBarry Smith #define PETSC_EXTERN_CXX_BEGIN extern "C" { 33d382aafbSBarry Smith #define PETSC_EXTERN_CXX_END } 34d382aafbSBarry Smith #else 35d382aafbSBarry Smith #define PETSC_EXTERN_CXX_BEGIN 36d382aafbSBarry Smith #define PETSC_EXTERN_CXX_END 37d382aafbSBarry Smith #endif 38d382aafbSBarry Smith /* ========================================================================== */ 39d382aafbSBarry Smith /* 40d382aafbSBarry Smith Current PETSc version number and release date. Also listed in 41d382aafbSBarry Smith Web page 42d382aafbSBarry Smith src/docs/tex/manual/intro.tex, 43d382aafbSBarry Smith src/docs/tex/manual/manual.tex. 44d382aafbSBarry Smith src/docs/website/index.html. 45d382aafbSBarry Smith */ 46d382aafbSBarry Smith #include "petscversion.h" 47301d30feSBarry Smith #define PETSC_AUTHOR_INFO " The PETSc Team\n petsc-maint@mcs.anl.gov\n http://www.mcs.anl.gov/petsc/\n" 48d382aafbSBarry Smith #if (PETSC_VERSION_RELEASE == 1) 49301d30feSBarry Smith #define PetscGetVersion(version,len) PetscSNPrintf(version,len,"Petsc Release Version %d.%d.%d, Patch %d, %s ", \ 50d382aafbSBarry Smith PETSC_VERSION_MAJOR,PETSC_VERSION_MINOR, PETSC_VERSION_SUBMINOR, \ 51301d30feSBarry Smith PETSC_VERSION_PATCH,PETSC_VERSION_PATCH_DATE) 52d382aafbSBarry Smith #else 53301d30feSBarry Smith #define PetscGetVersion(version,len) PetscSNPrintf(version,len,"Petsc Development HG revision: %s HG Date: %s", \ 54301d30feSBarry Smith PETSC_VERSION_HG, PETSC_VERSION_DATE_HG) 55d382aafbSBarry Smith #endif 56d382aafbSBarry Smith 57d382aafbSBarry Smith /*MC 58d382aafbSBarry Smith PetscGetVersion - Gets the PETSc version information in a string. 59d382aafbSBarry Smith 60d382aafbSBarry Smith Input Parameter: 61d382aafbSBarry Smith . len - length of the string 62d382aafbSBarry Smith 63d382aafbSBarry Smith Output Parameter: 64d382aafbSBarry Smith . version - version string 65d382aafbSBarry Smith 66d382aafbSBarry Smith Level: developer 67d382aafbSBarry Smith 68d382aafbSBarry Smith Usage: 69d382aafbSBarry Smith char version[256]; 70d382aafbSBarry Smith ierr = PetscGetVersion(version,256);CHKERRQ(ierr) 71d382aafbSBarry Smith 72d382aafbSBarry Smith Fortran Note: 73d382aafbSBarry Smith This routine is not supported in Fortran. 74d382aafbSBarry Smith 75d382aafbSBarry Smith .seealso: PetscGetProgramName() 76d382aafbSBarry Smith 77d382aafbSBarry Smith M*/ 78d382aafbSBarry Smith 79d382aafbSBarry Smith /* ========================================================================== */ 80d382aafbSBarry Smith 81d382aafbSBarry Smith /* 82d382aafbSBarry Smith Defines the interface to MPI allowing the use of all MPI functions. 83d382aafbSBarry Smith 84d382aafbSBarry Smith PETSc does not use the C++ binding of MPI at ALL. The following flag 85d382aafbSBarry Smith makes sure the C++ bindings are not included. The C++ bindings REQUIRE 86d382aafbSBarry Smith putting mpi.h before ANY C++ include files, we cannot control this 87d382aafbSBarry Smith with all PETSc users. Users who want to use the MPI C++ bindings can include 88d382aafbSBarry Smith mpicxx.h directly in their code 89d382aafbSBarry Smith */ 90d382aafbSBarry Smith #define MPICH_SKIP_MPICXX 1 91d382aafbSBarry Smith #define OMPI_SKIP_MPICXX 1 92d382aafbSBarry Smith #include "mpi.h" 9365013866SBarry Smith 94d382aafbSBarry Smith /* 95d382aafbSBarry Smith Yuck, we need to put stdio.h AFTER mpi.h for MPICH2 with C++ compiler 96d382aafbSBarry Smith see the top of mpicxx.h in the MPICH2 distribution. 97d382aafbSBarry Smith 98d382aafbSBarry Smith The MPI STANDARD HAS TO BE CHANGED to prevent this nonsense. 99d382aafbSBarry Smith */ 100d382aafbSBarry Smith #include <stdio.h> 101d382aafbSBarry Smith 102d382aafbSBarry Smith /* MSMPI on 32bit windows requires this yukky hack - that breaks MPI standard compliance */ 103d382aafbSBarry Smith #if !defined(MPIAPI) 104d382aafbSBarry Smith #define MPIAPI 105d382aafbSBarry Smith #endif 106d382aafbSBarry Smith 107b3506946SBarry Smith 108d382aafbSBarry Smith /*MC 109d382aafbSBarry Smith PetscErrorCode - datatype used for return error code from all PETSc functions 110d382aafbSBarry Smith 111d382aafbSBarry Smith Level: beginner 112d382aafbSBarry Smith 113d382aafbSBarry Smith .seealso: CHKERRQ, SETERRQ 114d382aafbSBarry Smith M*/ 115d382aafbSBarry Smith typedef int PetscErrorCode; 116d382aafbSBarry Smith 117d382aafbSBarry Smith /*MC 118d382aafbSBarry Smith 119503cfb0cSBarry Smith PetscClassId - A unique id used to identify each PETSc class. 120d382aafbSBarry Smith (internal integer in the data structure used for error 121d382aafbSBarry Smith checking). These are all defined by an offset from the lowest 1220700a824SBarry Smith one, PETSC_SMALLEST_CLASSID. 123d382aafbSBarry Smith 124d382aafbSBarry Smith Level: advanced 125d382aafbSBarry Smith 1260700a824SBarry Smith .seealso: PetscClassIdRegister(), PetscLogEventRegister(), PetscHeaderCreate() 127d382aafbSBarry Smith M*/ 1280700a824SBarry Smith typedef int PetscClassId; 129d382aafbSBarry Smith 130d382aafbSBarry Smith 131d382aafbSBarry Smith /*MC 132d382aafbSBarry Smith PetscBLASInt - datatype used to represent 'int' parameters to BLAS/LAPACK functions. 133d382aafbSBarry Smith 134d382aafbSBarry Smith Level: intermediate 135d382aafbSBarry Smith 136d382aafbSBarry Smith Notes: usually this is the same as PetscInt, but if PETSc was built with --with-64-bit-indices but 1373b2a8c54SBarry Smith standard C/Fortran integers are 32 bit then this is NOT the same as PetscInt it remains 32 bit 138287e6e24SBarry Smith (except on very rare BLAS/LAPACK implementations that support 64 bit integers see the note below). 1393b2a8c54SBarry Smith 1403b2a8c54SBarry Smith PetscBLASIntCheck(a) checks if the given PetscInt a will fit in a PetscBLASInt, if not it generates a 1413b2a8c54SBarry Smith PETSC_ERR_ARG_OUTOFRANGE. 1423b2a8c54SBarry Smith 1433b2a8c54SBarry Smith PetscBLASInt b = PetscBLASIntCast(a) checks if the given PetscInt a will fit in a PetscBLASInt, if not it 1443b2a8c54SBarry Smith generates a PETSC_ERR_ARG_OUTOFRANGE 145d382aafbSBarry Smith 146287e6e24SBarry Smith Developer Notes: The 64bit versions of MATLAB ship with BLAS and LAPACK that use 64 bit integers for sizes etc, 147287e6e24SBarry Smith if you run ./configure with the option 148287e6e24SBarry Smith --with-blas-lapack-lib=[/Applications/MATLAB_R2010b.app/bin/maci64/libmwblas.dylib,/Applications/MATLAB_R2010b.app/bin/maci64/libmwlapack.dylib] 149287e6e24SBarry Smith for example, you can change the int below to long int. Since MATLAB uses the MKL (Intel Math Libraries) it is likely one can 150287e6e24SBarry Smith purchase a 64 bit integer version of the MKL and use that with a PetscBLASInt of long int. 151287e6e24SBarry Smith 152287e6e24SBarry Smith External packages such as hypre, ML, SuperLU etc do not provide any support for passing 64 bit integers to BLAS/LAPACK so cannot 153287e6e24SBarry Smith be used with PETSc if you have set PetscBLASInt to long int. 154287e6e24SBarry Smith 155d382aafbSBarry Smith .seealso: PetscMPIInt, PetscInt 156d382aafbSBarry Smith 157d382aafbSBarry Smith M*/ 158d382aafbSBarry Smith typedef int PetscBLASInt; 159d382aafbSBarry Smith 160d382aafbSBarry Smith /*MC 161d382aafbSBarry Smith PetscMPIInt - datatype used to represent 'int' parameters to MPI functions. 162d382aafbSBarry Smith 163d382aafbSBarry Smith Level: intermediate 164d382aafbSBarry Smith 165d382aafbSBarry Smith Notes: usually this is the same as PetscInt, but if PETSc was built with --with-64-bit-indices but 1663b2a8c54SBarry Smith standard C/Fortran integers are 32 bit then this is NOT the same as PetscInt it remains 32 bit 167d382aafbSBarry Smith 1683b2a8c54SBarry Smith PetscMPIIntCheck(a) checks if the given PetscInt a will fit in a PetscMPIInt, if not it generates a 169d382aafbSBarry Smith PETSC_ERR_ARG_OUTOFRANGE. 170d382aafbSBarry Smith 1713b2a8c54SBarry Smith PetscMPIInt b = PetscMPIIntCast(a) checks if the given PetscInt a will fit in a PetscMPIInt, if not it 172d382aafbSBarry Smith generates a PETSC_ERR_ARG_OUTOFRANGE 173d382aafbSBarry Smith 174d382aafbSBarry Smith .seealso: PetscBLASInt, PetscInt 175d382aafbSBarry Smith 176d382aafbSBarry Smith M*/ 177d382aafbSBarry Smith typedef int PetscMPIInt; 178d382aafbSBarry Smith 179d382aafbSBarry Smith /*MC 180d382aafbSBarry Smith PetscEnum - datatype used to pass enum types within PETSc functions. 181d382aafbSBarry Smith 182d382aafbSBarry Smith Level: intermediate 183d382aafbSBarry Smith 184d382aafbSBarry Smith PetscMPIIntCheck(a) checks if the given PetscInt a will fit in a PetscMPIInt, if not it generates a 185d382aafbSBarry Smith PETSC_ERR_ARG_OUTOFRANGE. 186d382aafbSBarry Smith 187d382aafbSBarry Smith PetscMPIInt b = PetscMPIIntCast(a) checks if the given PetscInt a will fit in a PetscMPIInt, if not it 188d382aafbSBarry Smith generates a PETSC_ERR_ARG_OUTOFRANGE 189d382aafbSBarry Smith 190d382aafbSBarry Smith .seealso: PetscOptionsGetEnum(), PetscOptionsEnum(), PetscBagRegisterEnum() 191d382aafbSBarry Smith M*/ 192d382aafbSBarry Smith typedef enum { ENUM_DUMMY } PetscEnum; 193d382aafbSBarry Smith 194d382aafbSBarry Smith /*MC 195d382aafbSBarry Smith PetscInt - PETSc type that represents integer - used primarily to 1963b2a8c54SBarry Smith represent size of arrays and indexing into arrays. Its size can be configured with the option 197d382aafbSBarry Smith --with-64-bit-indices - to be either 32bit or 64bit [default 32 bit ints] 198d382aafbSBarry Smith 199d382aafbSBarry Smith Level: intermediate 200d382aafbSBarry Smith 201d382aafbSBarry Smith .seealso: PetscScalar, PetscBLASInt, PetscMPIInt 202d382aafbSBarry Smith M*/ 203d382aafbSBarry Smith #if defined(PETSC_USE_64BIT_INDICES) 204d382aafbSBarry Smith typedef long long PetscInt; 205d382aafbSBarry Smith #define MPIU_INT MPI_LONG_LONG_INT 206d382aafbSBarry Smith #else 207d382aafbSBarry Smith typedef int PetscInt; 208d382aafbSBarry Smith #define MPIU_INT MPI_INT 209d382aafbSBarry Smith #endif 210d382aafbSBarry Smith 21158b60935SBarry Smith /*EC 21258b60935SBarry Smith 21358b60935SBarry Smith PetscPrecision - indicates what precision the object is using 21458b60935SBarry Smith 21558b60935SBarry Smith Level: advanced 21658b60935SBarry Smith 21758b60935SBarry Smith .seealso: PetscObjectSetPrecision() 21858b60935SBarry Smith E*/ 21958b60935SBarry Smith typedef enum { PETSC_PRECISION_SINGLE=4,PETSC_PRECISION_DOUBLE=8 } PetscPrecision; 22058b60935SBarry Smith extern const char *PetscPrecisions[]; 22158b60935SBarry Smith 22258b60935SBarry Smith 223503cfb0cSBarry Smith /* 224503cfb0cSBarry Smith For the rare cases when one needs to send a size_t object with MPI 225503cfb0cSBarry Smith */ 226d382aafbSBarry Smith #if (PETSC_SIZEOF_SIZE_T) == (PETSC_SIZEOF_INT) 227d382aafbSBarry Smith #define MPIU_SIZE_T MPI_INT 228d382aafbSBarry Smith #elif (PETSC_SIZEOF_SIZE_T) == (PETSC_SIZEOF_LONG) 229d382aafbSBarry Smith #define MPIU_SIZE_T MPI_LONG 230d382aafbSBarry Smith #elif (PETSC_SIZEOF_SIZE_T) == (PETSC_SIZEOF_LONG_LONG) 231d382aafbSBarry Smith #define MPIU_SIZE_T MPI_LONG_LONG_INT 232d382aafbSBarry Smith #else 233d382aafbSBarry Smith #error "Unknown size for size_t! Send us a bugreport at petsc-maint@mcs.anl.gov" 234d382aafbSBarry Smith #endif 235d382aafbSBarry Smith 236d382aafbSBarry Smith 237d382aafbSBarry Smith /* 238d382aafbSBarry Smith You can use PETSC_STDOUT as a replacement of stdout. You can also change 239d382aafbSBarry Smith the value of PETSC_STDOUT to redirect all standard output elsewhere 240d382aafbSBarry Smith */ 241d382aafbSBarry Smith 242d382aafbSBarry Smith extern FILE* PETSC_STDOUT; 243d382aafbSBarry Smith 244d382aafbSBarry Smith /* 245d382aafbSBarry Smith You can use PETSC_STDERR as a replacement of stderr. You can also change 246d382aafbSBarry Smith the value of PETSC_STDERR to redirect all standard error elsewhere 247d382aafbSBarry Smith */ 248d382aafbSBarry Smith extern FILE* PETSC_STDERR; 249d382aafbSBarry Smith 250d382aafbSBarry Smith /* 251d382aafbSBarry Smith PETSC_ZOPEFD is used to send data to the PETSc webpage. It can be used 252d382aafbSBarry Smith in conjunction with PETSC_STDOUT, or by itself. 253d382aafbSBarry Smith */ 254d382aafbSBarry Smith extern FILE* PETSC_ZOPEFD; 255d382aafbSBarry Smith 256d382aafbSBarry Smith #if !defined(PETSC_USE_EXTERN_CXX) && defined(__cplusplus) 257d382aafbSBarry Smith /*MC 258d382aafbSBarry Smith PetscPolymorphicSubroutine - allows defining a C++ polymorphic version of 259d382aafbSBarry Smith a PETSc function that remove certain optional arguments for a simplier user interface 260d382aafbSBarry Smith 261d382aafbSBarry Smith Synopsis: 262d382aafbSBarry Smith PetscPolymorphicSubroutine(Functionname,(arguments of C++ function),(arguments of C function)) 263d382aafbSBarry Smith 264eca87e8dSBarry Smith Not collective 265eca87e8dSBarry Smith 266d382aafbSBarry Smith Level: developer 267d382aafbSBarry Smith 268d382aafbSBarry Smith Example: 269d382aafbSBarry Smith PetscPolymorphicSubroutine(VecNorm,(Vec x,PetscReal *r),(x,NORM_2,r)) generates the new routine 270d382aafbSBarry Smith PetscErrorCode VecNorm(Vec x,PetscReal *r) = VecNorm(x,NORM_2,r) 271d382aafbSBarry Smith 272d382aafbSBarry Smith .seealso: PetscPolymorphicFunction() 273d382aafbSBarry Smith 274d382aafbSBarry Smith M*/ 275d382aafbSBarry Smith #define PetscPolymorphicSubroutine(A,B,C) PETSC_STATIC_INLINE PetscErrorCode A B {return A C;} 276d382aafbSBarry Smith 277d382aafbSBarry Smith /*MC 278d382aafbSBarry Smith PetscPolymorphicScalar - allows defining a C++ polymorphic version of 279d382aafbSBarry Smith a PETSc function that replaces a PetscScalar * argument with a PetscScalar argument 280d382aafbSBarry Smith 281d382aafbSBarry Smith Synopsis: 282d382aafbSBarry Smith PetscPolymorphicScalar(Functionname,(arguments of C++ function),(arguments of C function)) 283d382aafbSBarry Smith 284eca87e8dSBarry Smith Not collective 285eca87e8dSBarry Smith 286d382aafbSBarry Smith Level: developer 287d382aafbSBarry Smith 288d382aafbSBarry Smith Example: 289d382aafbSBarry Smith PetscPolymorphicScalar(VecAXPY,(PetscScalar _val,Vec x,Vec y),(&_Val,x,y)) generates the new routine 290d382aafbSBarry Smith PetscErrorCode VecAXPY(PetscScalar _val,Vec x,Vec y) = {PetscScalar _Val = _val; return VecAXPY(&_Val,x,y);} 291d382aafbSBarry Smith 292d382aafbSBarry Smith .seealso: PetscPolymorphicFunction(),PetscPolymorphicSubroutine() 293d382aafbSBarry Smith 294d382aafbSBarry Smith M*/ 295d382aafbSBarry Smith #define PetscPolymorphicScalar(A,B,C) PETSC_STATIC_INLINE PetscErrorCode A B {PetscScalar _Val = _val; return A C;} 296d382aafbSBarry Smith 297d382aafbSBarry Smith /*MC 298d382aafbSBarry Smith PetscPolymorphicFunction - allows defining a C++ polymorphic version of 299d382aafbSBarry Smith a PETSc function that remove certain optional arguments for a simplier user interface 300d382aafbSBarry Smith and returns the computed value (istead of an error code) 301d382aafbSBarry Smith 302d382aafbSBarry Smith Synopsis: 303d382aafbSBarry Smith PetscPolymorphicFunction(Functionname,(arguments of C++ function),(arguments of C function),return type,return variable name) 304d382aafbSBarry Smith 305eca87e8dSBarry Smith Not collective 306eca87e8dSBarry Smith 307d382aafbSBarry Smith Level: developer 308d382aafbSBarry Smith 309d382aafbSBarry Smith Example: 310d382aafbSBarry Smith PetscPolymorphicFunction(VecNorm,(Vec x,NormType t),(x,t,&r),PetscReal,r) generates the new routine 311d382aafbSBarry Smith PetscReal VecNorm(Vec x,NormType t) = {PetscReal r; VecNorm(x,t,&r); return r;} 312d382aafbSBarry Smith 313d382aafbSBarry Smith .seealso: PetscPolymorphicSubroutine() 314d382aafbSBarry Smith 315d382aafbSBarry Smith M*/ 316d382aafbSBarry Smith #define PetscPolymorphicFunction(A,B,C,D,E) PETSC_STATIC_INLINE D A B {D E; A C;return E;} 317d382aafbSBarry Smith 318d382aafbSBarry Smith #else 319d382aafbSBarry Smith #define PetscPolymorphicSubroutine(A,B,C) 320d382aafbSBarry Smith #define PetscPolymorphicScalar(A,B,C) 321d382aafbSBarry Smith #define PetscPolymorphicFunction(A,B,C,D,E) 322d382aafbSBarry Smith #endif 323d382aafbSBarry Smith 324d382aafbSBarry Smith /*MC 325d382aafbSBarry Smith PetscUnlikely - hints the compiler that the given condition is usually FALSE 326d382aafbSBarry Smith 327d382aafbSBarry Smith Synopsis: 328ace3abfcSBarry Smith PetscBool PetscUnlikely(PetscBool cond) 329d382aafbSBarry Smith 330eca87e8dSBarry Smith Not Collective 331eca87e8dSBarry Smith 332d382aafbSBarry Smith Input Parameters: 333d382aafbSBarry Smith . cond - condition or expression 334d382aafbSBarry Smith 335d382aafbSBarry Smith Note: This returns the same truth value, it is only a hint to compilers that the resulting 336d382aafbSBarry Smith branch is unlikely. 337d382aafbSBarry Smith 338d382aafbSBarry Smith Level: advanced 339d382aafbSBarry Smith 340d382aafbSBarry Smith .seealso: PetscLikely(), CHKERRQ 341d382aafbSBarry Smith M*/ 342d382aafbSBarry Smith 343d382aafbSBarry Smith /*MC 344d382aafbSBarry Smith PetscLikely - hints the compiler that the given condition is usually TRUE 345d382aafbSBarry Smith 346d382aafbSBarry Smith Synopsis: 347ace3abfcSBarry Smith PetscBool PetscUnlikely(PetscBool cond) 348d382aafbSBarry Smith 349eca87e8dSBarry Smith Not Collective 350eca87e8dSBarry Smith 351d382aafbSBarry Smith Input Parameters: 352d382aafbSBarry Smith . cond - condition or expression 353d382aafbSBarry Smith 354d382aafbSBarry Smith Note: This returns the same truth value, it is only a hint to compilers that the resulting 355d382aafbSBarry Smith branch is likely. 356d382aafbSBarry Smith 357d382aafbSBarry Smith Level: advanced 358d382aafbSBarry Smith 359d382aafbSBarry Smith .seealso: PetscUnlikely() 360d382aafbSBarry Smith M*/ 361d382aafbSBarry Smith #if defined(PETSC_HAVE_BUILTIN_EXPECT) 362d382aafbSBarry Smith # define PetscUnlikely(cond) __builtin_expect(!!(cond),0) 363d382aafbSBarry Smith # define PetscLikely(cond) __builtin_expect(!!(cond),1) 364d382aafbSBarry Smith #else 365cd3f4ce9SJed Brown # define PetscUnlikely(cond) (cond) 366cd3f4ce9SJed Brown # define PetscLikely(cond) (cond) 367d382aafbSBarry Smith #endif 368d382aafbSBarry Smith 369d382aafbSBarry Smith /* 370d382aafbSBarry Smith Defines some elementary mathematics functions and constants. 371d382aafbSBarry Smith */ 372d382aafbSBarry Smith #include "petscmath.h" 373d382aafbSBarry Smith 374d382aafbSBarry Smith /* 375d382aafbSBarry Smith Declare extern C stuff after including external header files 376d382aafbSBarry Smith */ 377d382aafbSBarry Smith 378d382aafbSBarry Smith PETSC_EXTERN_CXX_BEGIN 379d382aafbSBarry Smith 380d382aafbSBarry Smith /* 381d382aafbSBarry Smith Basic PETSc constants 382d382aafbSBarry Smith */ 383d382aafbSBarry Smith 384d382aafbSBarry Smith /*E 385ace3abfcSBarry Smith PetscBool - Logical variable. Actually an int in C and a logical in Fortran. 386d382aafbSBarry Smith 387d382aafbSBarry Smith Level: beginner 388d382aafbSBarry Smith 389ace3abfcSBarry Smith Developer Note: Why have PetscBool , why not use bool in C? The problem is that K and R C, C99 and C++ all have different mechanisms for 39034e82e7dSBarry Smith boolean values. It is not easy to have a simple macro that that will work properly in all circumstances with all three mechanisms. 39134e82e7dSBarry Smith 392d382aafbSBarry Smith E*/ 393ace3abfcSBarry Smith typedef enum { PETSC_FALSE,PETSC_TRUE } PetscBool; 394ace3abfcSBarry Smith extern const char *PetscBools[]; 39570b3c8c7SBarry Smith 39670b3c8c7SBarry Smith /*E 39770b3c8c7SBarry Smith PetscCopyMode - Determines how an array passed to certain functions is copied or retained 39870b3c8c7SBarry Smith 39970b3c8c7SBarry Smith Level: beginner 40070b3c8c7SBarry Smith 40170b3c8c7SBarry Smith $ PETSC_COPY_VALUES - the array values are copied into new space, the user is free to reuse or delete the passed in array 40270b3c8c7SBarry Smith $ PETSC_OWN_POINTER - the array values are NOT copied, the object takes ownership of the array and will free it later, the user cannot change or 40370b3c8c7SBarry Smith $ delete the array. The array MUST have been obtained with PetscMalloc(). Hence this mode cannot be used in Fortran. 40470b3c8c7SBarry Smith $ PETSC_USE_POINTER - the array values are NOT copied, the object uses the array but does NOT take ownership of the array. The user cannot use 40570b3c8c7SBarry Smith the array but the user must delete the array after the object is destroyed. 40670b3c8c7SBarry Smith 40770b3c8c7SBarry Smith E*/ 40870b3c8c7SBarry Smith typedef enum { PETSC_COPY_VALUES, PETSC_OWN_POINTER, PETSC_USE_POINTER} PetscCopyMode; 40970b3c8c7SBarry Smith extern const char *PetscCopyModes[]; 410d382aafbSBarry Smith 411d382aafbSBarry Smith /*MC 412ace3abfcSBarry Smith PETSC_FALSE - False value of PetscBool 413d382aafbSBarry Smith 414d382aafbSBarry Smith Level: beginner 415d382aafbSBarry Smith 416d382aafbSBarry Smith Note: Zero integer 417d382aafbSBarry Smith 418ace3abfcSBarry Smith .seealso: PetscBool , PETSC_TRUE 419d382aafbSBarry Smith M*/ 420d382aafbSBarry Smith 421d382aafbSBarry Smith /*MC 422ace3abfcSBarry Smith PETSC_TRUE - True value of PetscBool 423d382aafbSBarry Smith 424d382aafbSBarry Smith Level: beginner 425d382aafbSBarry Smith 426d382aafbSBarry Smith Note: Nonzero integer 427d382aafbSBarry Smith 428ace3abfcSBarry Smith .seealso: PetscBool , PETSC_FALSE 429d382aafbSBarry Smith M*/ 430d382aafbSBarry Smith 431d382aafbSBarry Smith /*MC 432d382aafbSBarry Smith PETSC_NULL - standard way of passing in a null or array or pointer 433d382aafbSBarry Smith 434d382aafbSBarry Smith Level: beginner 435d382aafbSBarry Smith 436d382aafbSBarry Smith Notes: accepted by many PETSc functions to not set a parameter and instead use 437d382aafbSBarry Smith some default 438d382aafbSBarry Smith 439d382aafbSBarry Smith This macro does not exist in Fortran; you must use PETSC_NULL_INTEGER, 440503cfb0cSBarry Smith PETSC_NULL_DOUBLE_PRECISION, PETSC_NULL_FUNCTION, PETSC_NULL_OBJECT etc 441d382aafbSBarry Smith 44234e82e7dSBarry Smith Developer Note: Why have PETSC_NULL, why not just use NULL? The problem is that NULL is defined in different include files under 44334e82e7dSBarry Smith different versions of Unix. It is tricky to insure the correct include file is always included. 44434e82e7dSBarry Smith 445d382aafbSBarry Smith .seealso: PETSC_DECIDE, PETSC_DEFAULT, PETSC_IGNORE, PETSC_DETERMINE 446d382aafbSBarry Smith 447d382aafbSBarry Smith M*/ 448d382aafbSBarry Smith #define PETSC_NULL 0 449d382aafbSBarry Smith 450d382aafbSBarry Smith /*MC 451d382aafbSBarry Smith PETSC_IGNORE - same as PETSC_NULL, means PETSc will ignore this argument 452d382aafbSBarry Smith 453d382aafbSBarry Smith Level: beginner 454d382aafbSBarry Smith 455d382aafbSBarry Smith Note: accepted by many PETSc functions to not set a parameter and instead use 456d382aafbSBarry Smith some default 457d382aafbSBarry Smith 458d382aafbSBarry Smith Fortran Notes: This macro does not exist in Fortran; you must use PETSC_NULL_INTEGER, 459d382aafbSBarry Smith PETSC_NULL_DOUBLE_PRECISION etc 460d382aafbSBarry Smith 461d382aafbSBarry Smith .seealso: PETSC_DECIDE, PETSC_DEFAULT, PETSC_NULL, PETSC_DETERMINE 462d382aafbSBarry Smith 463d382aafbSBarry Smith M*/ 464d382aafbSBarry Smith #define PETSC_IGNORE PETSC_NULL 465d382aafbSBarry Smith 466d382aafbSBarry Smith /*MC 467557d4da8SBarry Smith PETSC_DECIDE - standard way of passing in integer or floating point parameter 468557d4da8SBarry Smith where you wish PETSc to use the default. 469557d4da8SBarry Smith 470557d4da8SBarry Smith Level: beginner 471557d4da8SBarry Smith 472557d4da8SBarry Smith .seealso: PETSC_NULL, PETSC_DEFAULT, PETSC_IGNORE, PETSC_DETERMINE 473557d4da8SBarry Smith 474557d4da8SBarry Smith M*/ 475557d4da8SBarry Smith #define PETSC_DECIDE -1 476557d4da8SBarry Smith 477557d4da8SBarry Smith /*MC 478d382aafbSBarry Smith PETSC_DETERMINE - standard way of passing in integer or floating point parameter 479d382aafbSBarry Smith where you wish PETSc to compute the required value. 480d382aafbSBarry Smith 481d382aafbSBarry Smith Level: beginner 482d382aafbSBarry Smith 483557d4da8SBarry Smith 484557d4da8SBarry Smith Developer Note: I would like to use const PetscInt PETSC_DETERMINE = PETSC_DECIDE; but for 485557d4da8SBarry Smith some reason this is not allowed by the standard even though PETSC_DECIDE is a constant value. 486557d4da8SBarry Smith 487d382aafbSBarry Smith .seealso: PETSC_DECIDE, PETSC_DEFAULT, PETSC_IGNORE, PETSC_NULL, VecSetSizes() 488d382aafbSBarry Smith 489d382aafbSBarry Smith M*/ 490d382aafbSBarry Smith #define PETSC_DETERMINE PETSC_DECIDE 491d382aafbSBarry Smith 492d382aafbSBarry Smith /*MC 493557d4da8SBarry Smith PETSC_DEFAULT - standard way of passing in integer or floating point parameter 494557d4da8SBarry Smith where you wish PETSc to use the default. 495557d4da8SBarry Smith 496557d4da8SBarry Smith Level: beginner 497557d4da8SBarry Smith 498557d4da8SBarry Smith Fortran Notes: You need to use PETSC_DEFAULT_INTEGER or PETSC_DEFAULT_DOUBLE_PRECISION. 499557d4da8SBarry Smith 500557d4da8SBarry Smith .seealso: PETSC_DECIDE, PETSC_NULL, PETSC_IGNORE, PETSC_DETERMINE 501557d4da8SBarry Smith 502557d4da8SBarry Smith M*/ 503557d4da8SBarry Smith #define PETSC_DEFAULT -2 504557d4da8SBarry Smith 505557d4da8SBarry Smith /*MC 506d382aafbSBarry Smith PETSC_COMM_WORLD - the equivalent of the MPI_COMM_WORLD communicator which represents 507d382aafbSBarry Smith all the processs that PETSc knows about. 508d382aafbSBarry Smith 509d382aafbSBarry Smith Level: beginner 510d382aafbSBarry Smith 511d382aafbSBarry Smith Notes: By default PETSC_COMM_WORLD and MPI_COMM_WORLD are identical unless you wish to 512d382aafbSBarry Smith run PETSc on ONLY a subset of MPI_COMM_WORLD. In that case create your new (smaller) 513d382aafbSBarry Smith communicator, call it, say comm, and set PETSC_COMM_WORLD = comm BEFORE calling 514d382aafbSBarry Smith PetscInitialize() 515d382aafbSBarry Smith 516d382aafbSBarry Smith .seealso: PETSC_COMM_SELF 517d382aafbSBarry Smith 518d382aafbSBarry Smith M*/ 519d382aafbSBarry Smith extern MPI_Comm PETSC_COMM_WORLD; 520d382aafbSBarry Smith 521d382aafbSBarry Smith /*MC 522503cfb0cSBarry Smith PETSC_COMM_SELF - This is always MPI_COMM_SELF 523d382aafbSBarry Smith 524d382aafbSBarry Smith Level: beginner 525d382aafbSBarry Smith 526d382aafbSBarry Smith .seealso: PETSC_COMM_WORLD 527d382aafbSBarry Smith 528d382aafbSBarry Smith M*/ 529d382aafbSBarry Smith #define PETSC_COMM_SELF MPI_COMM_SELF 530d382aafbSBarry Smith 5317087cfbeSBarry Smith extern PetscBool PetscInitializeCalled; 5327087cfbeSBarry Smith extern PetscBool PetscFinalizeCalled; 533d382aafbSBarry Smith 5347087cfbeSBarry Smith extern PetscErrorCode PetscSetHelpVersionFunctions(PetscErrorCode (*)(MPI_Comm),PetscErrorCode (*)(MPI_Comm)); 5357087cfbeSBarry Smith extern PetscErrorCode PetscCommDuplicate(MPI_Comm,MPI_Comm*,int*); 5367087cfbeSBarry Smith extern PetscErrorCode PetscCommDestroy(MPI_Comm*); 537d382aafbSBarry Smith 538d382aafbSBarry Smith /*MC 539d382aafbSBarry Smith PetscMalloc - Allocates memory 540d382aafbSBarry Smith 541eca87e8dSBarry Smith Synopsis: 542eca87e8dSBarry Smith PetscErrorCode PetscMalloc(size_t m,void **result) 543eca87e8dSBarry Smith 544eca87e8dSBarry Smith Not Collective 545eca87e8dSBarry Smith 546d382aafbSBarry Smith Input Parameter: 547d382aafbSBarry Smith . m - number of bytes to allocate 548d382aafbSBarry Smith 549d382aafbSBarry Smith Output Parameter: 550d382aafbSBarry Smith . result - memory allocated 551d382aafbSBarry Smith 552d382aafbSBarry Smith Level: beginner 553d382aafbSBarry Smith 554d382aafbSBarry Smith Notes: Memory is always allocated at least double aligned 555d382aafbSBarry Smith 556d382aafbSBarry Smith If you request memory of zero size it will allocate no space and assign the pointer to 0; PetscFree() will 557d382aafbSBarry Smith properly handle not freeing the null pointer. 558d382aafbSBarry Smith 559d382aafbSBarry Smith .seealso: PetscFree(), PetscNew() 560d382aafbSBarry Smith 561d382aafbSBarry Smith Concepts: memory allocation 562d382aafbSBarry Smith 563d382aafbSBarry Smith M*/ 5642714b66aSJed Brown #define PetscMalloc(a,b) ((a != 0) ? (*PetscTrMalloc)((a),__LINE__,PETSC_FUNCTION_NAME,__FILE__,__SDIR__,(void**)(b)) : (*(b) = 0,0) ) 565d382aafbSBarry Smith 566d382aafbSBarry Smith /*MC 567503cfb0cSBarry Smith PetscAddrAlign - Rounds up an address to PETSC_MEMALIGN alignment 568d382aafbSBarry Smith 569d382aafbSBarry Smith Synopsis: 570d382aafbSBarry Smith void *PetscAddrAlign(void *addr) 571d382aafbSBarry Smith 572eca87e8dSBarry Smith Not Collective 573eca87e8dSBarry Smith 574eca87e8dSBarry Smith Input Parameters: 575eca87e8dSBarry Smith . addr - address to align (any pointer type) 576eca87e8dSBarry Smith 577d382aafbSBarry Smith Level: developer 578d382aafbSBarry Smith 579d382aafbSBarry Smith .seealso: PetscMallocAlign() 580d382aafbSBarry Smith 581d382aafbSBarry Smith Concepts: memory allocation 582d382aafbSBarry Smith M*/ 583d382aafbSBarry Smith #define PetscAddrAlign(a) (void*)((((PETSC_UINTPTR_T)(a))+(PETSC_MEMALIGN-1)) & ~(PETSC_MEMALIGN-1)) 584d382aafbSBarry Smith 585d382aafbSBarry Smith /*MC 586503cfb0cSBarry Smith PetscMalloc2 - Allocates 2 chunks of memory both aligned to PETSC_MEMALIGN 587d382aafbSBarry Smith 588eca87e8dSBarry Smith Synopsis: 589eca87e8dSBarry Smith PetscErrorCode PetscMalloc2(size_t m1,type, t1,void **r1,size_t m2,type t2,void **r2) 590eca87e8dSBarry Smith 591eca87e8dSBarry Smith Not Collective 592eca87e8dSBarry Smith 593d382aafbSBarry Smith Input Parameter: 594d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 595d382aafbSBarry Smith . t1 - type of first memory elements 596d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 597d382aafbSBarry Smith - t2 - type of second memory elements 598d382aafbSBarry Smith 599d382aafbSBarry Smith Output Parameter: 600d382aafbSBarry Smith + r1 - memory allocated in first chunk 601d382aafbSBarry Smith - r2 - memory allocated in second chunk 602d382aafbSBarry Smith 603d382aafbSBarry Smith Level: developer 604d382aafbSBarry Smith 605d382aafbSBarry Smith .seealso: PetscFree(), PetscNew(), PetscMalloc() 606d382aafbSBarry Smith 607d382aafbSBarry Smith Concepts: memory allocation 608d382aafbSBarry Smith 609d382aafbSBarry Smith M*/ 610d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 611d382aafbSBarry Smith #define PetscMalloc2(m1,t1,r1,m2,t2,r2) (PetscMalloc((m1)*sizeof(t1),r1) || PetscMalloc((m2)*sizeof(t2),r2)) 612d382aafbSBarry Smith #else 6133b98c0a2SBarry Smith #define PetscMalloc2(m1,t1,r1,m2,t2,r2) ((*(r2) = 0,PetscMalloc((m1)*sizeof(t1)+(m2)*sizeof(t2)+(PETSC_MEMALIGN-1),r1)) \ 614d382aafbSBarry Smith || (*(r2) = (t2*)PetscAddrAlign(*(r1)+m1),0)) 615d382aafbSBarry Smith #endif 616d382aafbSBarry Smith 617d382aafbSBarry Smith /*MC 618503cfb0cSBarry Smith PetscMalloc3 - Allocates 3 chunks of memory all aligned to PETSC_MEMALIGN 619d382aafbSBarry Smith 620eca87e8dSBarry Smith Synopsis: 621eca87e8dSBarry Smith PetscErrorCode PetscMalloc3(size_t m1,type, t1,void **r1,size_t m2,type t2,void **r2,size_t m3,type t3,void **r3) 622eca87e8dSBarry Smith 623eca87e8dSBarry Smith Not Collective 624eca87e8dSBarry Smith 625d382aafbSBarry Smith Input Parameter: 626d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 627d382aafbSBarry Smith . t1 - type of first memory elements 628d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 629d382aafbSBarry Smith . t2 - type of second memory elements 630d382aafbSBarry Smith . m3 - number of elements to allocate in 3rd chunk (may be zero) 631d382aafbSBarry Smith - t3 - type of third memory elements 632d382aafbSBarry Smith 633d382aafbSBarry Smith Output Parameter: 634d382aafbSBarry Smith + r1 - memory allocated in first chunk 635d382aafbSBarry Smith . r2 - memory allocated in second chunk 636d382aafbSBarry Smith - r3 - memory allocated in third chunk 637d382aafbSBarry Smith 638d382aafbSBarry Smith Level: developer 639d382aafbSBarry Smith 640d382aafbSBarry Smith .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree3() 641d382aafbSBarry Smith 642d382aafbSBarry Smith Concepts: memory allocation 643d382aafbSBarry Smith 644d382aafbSBarry Smith M*/ 645d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 646d382aafbSBarry Smith #define PetscMalloc3(m1,t1,r1,m2,t2,r2,m3,t3,r3) (PetscMalloc((m1)*sizeof(t1),r1) || PetscMalloc((m2)*sizeof(t2),r2) || PetscMalloc((m3)*sizeof(t3),r3)) 647d382aafbSBarry Smith #else 6483b98c0a2SBarry Smith #define PetscMalloc3(m1,t1,r1,m2,t2,r2,m3,t3,r3) ((*(r2) = 0,*(r3) = 0,PetscMalloc((m1)*sizeof(t1)+(m2)*sizeof(t2)+(m3)*sizeof(t3)+2*(PETSC_MEMALIGN-1),r1)) \ 649d382aafbSBarry Smith || (*(r2) = (t2*)PetscAddrAlign(*(r1)+m1),*(r3) = (t3*)PetscAddrAlign(*(r2)+m2),0)) 650d382aafbSBarry Smith #endif 651d382aafbSBarry Smith 652d382aafbSBarry Smith /*MC 653503cfb0cSBarry Smith PetscMalloc4 - Allocates 4 chunks of memory all aligned to PETSC_MEMALIGN 654d382aafbSBarry Smith 655eca87e8dSBarry Smith Synopsis: 656eca87e8dSBarry Smith PetscErrorCode PetscMalloc4(size_t m1,type, t1,void **r1,size_t m2,type t2,void **r2,size_t m3,type t3,void **r3,size_t m4,type t4,void **r4) 657eca87e8dSBarry Smith 658eca87e8dSBarry Smith Not Collective 659eca87e8dSBarry Smith 660d382aafbSBarry Smith Input Parameter: 661d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 662d382aafbSBarry Smith . t1 - type of first memory elements 663d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 664d382aafbSBarry Smith . t2 - type of second memory elements 665d382aafbSBarry Smith . m3 - number of elements to allocate in 3rd chunk (may be zero) 666d382aafbSBarry Smith . t3 - type of third memory elements 667d382aafbSBarry Smith . m4 - number of elements to allocate in 4th chunk (may be zero) 668d382aafbSBarry Smith - t4 - type of fourth memory elements 669d382aafbSBarry Smith 670d382aafbSBarry Smith Output Parameter: 671d382aafbSBarry Smith + r1 - memory allocated in first chunk 672d382aafbSBarry Smith . r2 - memory allocated in second chunk 673d382aafbSBarry Smith . r3 - memory allocated in third chunk 674d382aafbSBarry Smith - r4 - memory allocated in fourth chunk 675d382aafbSBarry Smith 676d382aafbSBarry Smith Level: developer 677d382aafbSBarry Smith 678d382aafbSBarry Smith .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree3(), PetscFree4() 679d382aafbSBarry Smith 680d382aafbSBarry Smith Concepts: memory allocation 681d382aafbSBarry Smith 682d382aafbSBarry Smith M*/ 683d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 684d382aafbSBarry Smith #define PetscMalloc4(m1,t1,r1,m2,t2,r2,m3,t3,r3,m4,t4,r4) (PetscMalloc((m1)*sizeof(t1),r1) || PetscMalloc((m2)*sizeof(t2),r2) || PetscMalloc((m3)*sizeof(t3),r3) || PetscMalloc((m4)*sizeof(t4),r4)) 685d382aafbSBarry Smith #else 686d382aafbSBarry Smith #define PetscMalloc4(m1,t1,r1,m2,t2,r2,m3,t3,r3,m4,t4,r4) \ 6873b98c0a2SBarry Smith ((*(r2) = 0, *(r3) = 0, *(r4) = 0,PetscMalloc((m1)*sizeof(t1)+(m2)*sizeof(t2)+(m3)*sizeof(t3)+(m4)*sizeof(t4)+3*(PETSC_MEMALIGN-1),r1)) \ 688d382aafbSBarry Smith || (*(r2) = (t2*)PetscAddrAlign(*(r1)+m1),*(r3) = (t3*)PetscAddrAlign(*(r2)+m2),*(r4) = (t4*)PetscAddrAlign(*(r3)+m3),0)) 689d382aafbSBarry Smith #endif 690d382aafbSBarry Smith 691d382aafbSBarry Smith /*MC 692503cfb0cSBarry Smith PetscMalloc5 - Allocates 5 chunks of memory all aligned to PETSC_MEMALIGN 693d382aafbSBarry Smith 694eca87e8dSBarry Smith Synopsis: 695eca87e8dSBarry Smith PetscErrorCode PetscMalloc5(size_t m1,type, t1,void **r1,size_t m2,type t2,void **r2,size_t m3,type t3,void **r3,size_t m4,type t4,void **r4,size_t m5,type t5,void **r5) 696eca87e8dSBarry Smith 697eca87e8dSBarry Smith Not Collective 698eca87e8dSBarry Smith 699d382aafbSBarry Smith Input Parameter: 700d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 701d382aafbSBarry Smith . t1 - type of first memory elements 702d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 703d382aafbSBarry Smith . t2 - type of second memory elements 704d382aafbSBarry Smith . m3 - number of elements to allocate in 3rd chunk (may be zero) 705d382aafbSBarry Smith . t3 - type of third memory elements 706d382aafbSBarry Smith . m4 - number of elements to allocate in 4th chunk (may be zero) 707d382aafbSBarry Smith . t4 - type of fourth memory elements 708d382aafbSBarry Smith . m5 - number of elements to allocate in 5th chunk (may be zero) 709d382aafbSBarry Smith - t5 - type of fifth memory elements 710d382aafbSBarry Smith 711d382aafbSBarry Smith Output Parameter: 712d382aafbSBarry Smith + r1 - memory allocated in first chunk 713d382aafbSBarry Smith . r2 - memory allocated in second chunk 714d382aafbSBarry Smith . r3 - memory allocated in third chunk 715d382aafbSBarry Smith . r4 - memory allocated in fourth chunk 716d382aafbSBarry Smith - r5 - memory allocated in fifth chunk 717d382aafbSBarry Smith 718d382aafbSBarry Smith Level: developer 719d382aafbSBarry Smith 720d382aafbSBarry Smith .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree3(), PetscFree4(), PetscFree5() 721d382aafbSBarry Smith 722d382aafbSBarry Smith Concepts: memory allocation 723d382aafbSBarry Smith 724d382aafbSBarry Smith M*/ 725d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 726d382aafbSBarry Smith #define PetscMalloc5(m1,t1,r1,m2,t2,r2,m3,t3,r3,m4,t4,r4,m5,t5,r5) (PetscMalloc((m1)*sizeof(t1),r1) || PetscMalloc((m2)*sizeof(t2),r2) || PetscMalloc((m3)*sizeof(t3),r3) || PetscMalloc((m4)*sizeof(t4),r4) || PetscMalloc((m5)*sizeof(t5),r5)) 727d382aafbSBarry Smith #else 728d382aafbSBarry Smith #define PetscMalloc5(m1,t1,r1,m2,t2,r2,m3,t3,r3,m4,t4,r4,m5,t5,r5) \ 7293b98c0a2SBarry Smith ((*(r2) = 0, *(r3) = 0, *(r4) = 0,*(r5) = 0,PetscMalloc((m1)*sizeof(t1)+(m2)*sizeof(t2)+(m3)*sizeof(t3)+(m4)*sizeof(t4)+(m5)*sizeof(t5)+4*(PETSC_MEMALIGN-1),r1)) \ 730d382aafbSBarry Smith || (*(r2) = (t2*)PetscAddrAlign(*(r1)+m1),*(r3) = (t3*)PetscAddrAlign(*(r2)+m2),*(r4) = (t4*)PetscAddrAlign(*(r3)+m3),*(r5) = (t5*)PetscAddrAlign(*(r4)+m4),0)) 731d382aafbSBarry Smith #endif 732d382aafbSBarry Smith 733d382aafbSBarry Smith 734d382aafbSBarry Smith /*MC 735503cfb0cSBarry Smith PetscMalloc6 - Allocates 6 chunks of memory all aligned to PETSC_MEMALIGN 736d382aafbSBarry Smith 737eca87e8dSBarry Smith Synopsis: 738eca87e8dSBarry Smith PetscErrorCode PetscMalloc6(size_t m1,type, t1,void **r1,size_t m2,type t2,void **r2,size_t m3,type t3,void **r3,size_t m4,type t4,void **r4,size_t m5,type t5,void **r5,size_t m6,type t6,void **r6) 739eca87e8dSBarry Smith 740eca87e8dSBarry Smith Not Collective 741eca87e8dSBarry Smith 742d382aafbSBarry Smith Input Parameter: 743d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 744d382aafbSBarry Smith . t1 - type of first memory elements 745d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 746d382aafbSBarry Smith . t2 - type of second memory elements 747d382aafbSBarry Smith . m3 - number of elements to allocate in 3rd chunk (may be zero) 748d382aafbSBarry Smith . t3 - type of third memory elements 749d382aafbSBarry Smith . m4 - number of elements to allocate in 4th chunk (may be zero) 750d382aafbSBarry Smith . t4 - type of fourth memory elements 751d382aafbSBarry Smith . m5 - number of elements to allocate in 5th chunk (may be zero) 752d382aafbSBarry Smith . t5 - type of fifth memory elements 753d382aafbSBarry Smith . m6 - number of elements to allocate in 6th chunk (may be zero) 754d382aafbSBarry Smith - t6 - type of sixth memory elements 755d382aafbSBarry Smith 756d382aafbSBarry Smith Output Parameter: 757d382aafbSBarry Smith + r1 - memory allocated in first chunk 758d382aafbSBarry Smith . r2 - memory allocated in second chunk 759d382aafbSBarry Smith . r3 - memory allocated in third chunk 760d382aafbSBarry Smith . r4 - memory allocated in fourth chunk 761d382aafbSBarry Smith . r5 - memory allocated in fifth chunk 762d382aafbSBarry Smith - r6 - memory allocated in sixth chunk 763d382aafbSBarry Smith 764d382aafbSBarry Smith Level: developer 765d382aafbSBarry Smith 766d382aafbSBarry Smith .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree3(), PetscFree4(), PetscFree5(), PetscFree6() 767d382aafbSBarry Smith 768d382aafbSBarry Smith Concepts: memory allocation 769d382aafbSBarry Smith 770d382aafbSBarry Smith M*/ 771d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 772d382aafbSBarry Smith #define PetscMalloc6(m1,t1,r1,m2,t2,r2,m3,t3,r3,m4,t4,r4,m5,t5,r5,m6,t6,r6) (PetscMalloc((m1)*sizeof(t1),r1) || PetscMalloc((m2)*sizeof(t2),r2) || PetscMalloc((m3)*sizeof(t3),r3) || PetscMalloc((m4)*sizeof(t4),r4) || PetscMalloc((m5)*sizeof(t5),r5) || PetscMalloc((m6)*sizeof(t6),r6)) 773d382aafbSBarry Smith #else 774d382aafbSBarry Smith #define PetscMalloc6(m1,t1,r1,m2,t2,r2,m3,t3,r3,m4,t4,r4,m5,t5,r5,m6,t6,r6) \ 7753b98c0a2SBarry Smith ((*(r2) = 0, *(r3) = 0, *(r4) = 0,*(r5) = 0,*(r6) = 0,PetscMalloc((m1)*sizeof(t1)+(m2)*sizeof(t2)+(m3)*sizeof(t3)+(m4)*sizeof(t4)+(m5)*sizeof(t5)+(m6)*sizeof(t6)+5*(PETSC_MEMALIGN-1),r1)) \ 776d382aafbSBarry Smith || (*(r2) = (t2*)PetscAddrAlign(*(r1)+m1),*(r3) = (t3*)PetscAddrAlign(*(r2)+m2),*(r4) = (t4*)PetscAddrAlign(*(r3)+m3),*(r5) = (t5*)PetscAddrAlign(*(r4)+m4),*(r6) = (t6*)PetscAddrAlign(*(r5)+m5),0)) 777d382aafbSBarry Smith #endif 778d382aafbSBarry Smith 779d382aafbSBarry Smith /*MC 780503cfb0cSBarry Smith PetscMalloc7 - Allocates 7 chunks of memory all aligned to PETSC_MEMALIGN 781d382aafbSBarry Smith 782eca87e8dSBarry Smith Synopsis: 783eca87e8dSBarry Smith PetscErrorCode PetscMalloc7(size_t m1,type, t1,void **r1,size_t m2,type t2,void **r2,size_t m3,type t3,void **r3,size_t m4,type t4,void **r4,size_t m5,type t5,void **r5,size_t m6,type t6,void **r6,size_t m7,type t7,void **r7) 784eca87e8dSBarry Smith 785eca87e8dSBarry Smith Not Collective 786eca87e8dSBarry Smith 787d382aafbSBarry Smith Input Parameter: 788d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 789d382aafbSBarry Smith . t1 - type of first memory elements 790d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 791d382aafbSBarry Smith . t2 - type of second memory elements 792d382aafbSBarry Smith . m3 - number of elements to allocate in 3rd chunk (may be zero) 793d382aafbSBarry Smith . t3 - type of third memory elements 794d382aafbSBarry Smith . m4 - number of elements to allocate in 4th chunk (may be zero) 795d382aafbSBarry Smith . t4 - type of fourth memory elements 796d382aafbSBarry Smith . m5 - number of elements to allocate in 5th chunk (may be zero) 797d382aafbSBarry Smith . t5 - type of fifth memory elements 798d382aafbSBarry Smith . m6 - number of elements to allocate in 6th chunk (may be zero) 799d382aafbSBarry Smith . t6 - type of sixth memory elements 800d382aafbSBarry Smith . m7 - number of elements to allocate in 7th chunk (may be zero) 801d382aafbSBarry Smith - t7 - type of sixth memory elements 802d382aafbSBarry Smith 803d382aafbSBarry Smith Output Parameter: 804d382aafbSBarry Smith + r1 - memory allocated in first chunk 805d382aafbSBarry Smith . r2 - memory allocated in second chunk 806d382aafbSBarry Smith . r3 - memory allocated in third chunk 807d382aafbSBarry Smith . r4 - memory allocated in fourth chunk 808d382aafbSBarry Smith . r5 - memory allocated in fifth chunk 809d382aafbSBarry Smith . r6 - memory allocated in sixth chunk 810eca87e8dSBarry Smith - r7 - memory allocated in seventh chunk 811d382aafbSBarry Smith 812d382aafbSBarry Smith Level: developer 813d382aafbSBarry Smith 814d382aafbSBarry Smith .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree3(), PetscFree4(), PetscFree5(), PetscFree6(), PetscFree7() 815d382aafbSBarry Smith 816d382aafbSBarry Smith Concepts: memory allocation 817d382aafbSBarry Smith 818d382aafbSBarry Smith M*/ 819d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 820d382aafbSBarry Smith #define PetscMalloc7(m1,t1,r1,m2,t2,r2,m3,t3,r3,m4,t4,r4,m5,t5,r5,m6,t6,r6,m7,t7,r7) (PetscMalloc((m1)*sizeof(t1),r1) || PetscMalloc((m2)*sizeof(t2),r2) || PetscMalloc((m3)*sizeof(t3),r3) || PetscMalloc((m4)*sizeof(t4),r4) || PetscMalloc((m5)*sizeof(t5),r5) || PetscMalloc((m6)*sizeof(t6),r6) || PetscMalloc((m7)*sizeof(t7),r7)) 821d382aafbSBarry Smith #else 822d382aafbSBarry Smith #define PetscMalloc7(m1,t1,r1,m2,t2,r2,m3,t3,r3,m4,t4,r4,m5,t5,r5,m6,t6,r6,m7,t7,r7) \ 8233b98c0a2SBarry Smith ((*(r2) = 0, *(r3) = 0, *(r4) = 0,*(r5) = 0,*(r6) = 0,*(r7) = 0,PetscMalloc((m1)*sizeof(t1)+(m2)*sizeof(t2)+(m3)*sizeof(t3)+(m4)*sizeof(t4)+(m5)*sizeof(t5)+(m6)*sizeof(t6)+(m7)*sizeof(t7)+6*(PETSC_MEMALIGN-1),r1)) \ 824d382aafbSBarry Smith || (*(r2) = (t2*)PetscAddrAlign(*(r1)+m1),*(r3) = (t3*)PetscAddrAlign(*(r2)+m2),*(r4) = (t4*)PetscAddrAlign(*(r3)+m3),*(r5) = (t5*)PetscAddrAlign(*(r4)+m4),*(r6) = (t6*)PetscAddrAlign(*(r5)+m5),*(r7) = (t7*)PetscAddrAlign(*(r6)+m6),0)) 825d382aafbSBarry Smith #endif 826d382aafbSBarry Smith 827d382aafbSBarry Smith /*MC 828503cfb0cSBarry Smith PetscNew - Allocates memory of a particular type, zeros the memory! Aligned to PETSC_MEMALIGN 829d382aafbSBarry Smith 830eca87e8dSBarry Smith Synopsis: 831eca87e8dSBarry Smith PetscErrorCode PetscNew(struct type,((type *))result) 832eca87e8dSBarry Smith 833eca87e8dSBarry Smith Not Collective 834eca87e8dSBarry Smith 835d382aafbSBarry Smith Input Parameter: 836d382aafbSBarry Smith . type - structure name of space to be allocated. Memory of size sizeof(type) is allocated 837d382aafbSBarry Smith 838d382aafbSBarry Smith Output Parameter: 839d382aafbSBarry Smith . result - memory allocated 840d382aafbSBarry Smith 841d382aafbSBarry Smith Level: beginner 842d382aafbSBarry Smith 843ad0619ddSBarry Smith .seealso: PetscFree(), PetscMalloc(), PetscNewLog() 844d382aafbSBarry Smith 845d382aafbSBarry Smith Concepts: memory allocation 846d382aafbSBarry Smith 847d382aafbSBarry Smith M*/ 848d382aafbSBarry Smith #define PetscNew(A,b) (PetscMalloc(sizeof(A),(b)) || PetscMemzero(*(b),sizeof(A))) 849ad0619ddSBarry Smith 850ad0619ddSBarry Smith /*MC 851ad0619ddSBarry Smith PetscNewLog - Allocates memory of a particular type, zeros the memory! Aligned to PETSC_MEMALIGN. Associates the memory allocated 852ad0619ddSBarry Smith with the given object using PetscLogObjectMemory(). 853ad0619ddSBarry Smith 854ad0619ddSBarry Smith Synopsis: 855ad0619ddSBarry Smith PetscErrorCode PetscNewLog(PetscObject obj,struct type,((type *))result) 856ad0619ddSBarry Smith 857ad0619ddSBarry Smith Not Collective 858ad0619ddSBarry Smith 859ad0619ddSBarry Smith Input Parameter: 860ad0619ddSBarry Smith + obj - object memory is logged to 861ad0619ddSBarry Smith - type - structure name of space to be allocated. Memory of size sizeof(type) is allocated 862ad0619ddSBarry Smith 863ad0619ddSBarry Smith Output Parameter: 864ad0619ddSBarry Smith . result - memory allocated 865ad0619ddSBarry Smith 866ad0619ddSBarry Smith Level: developer 867ad0619ddSBarry Smith 868ad0619ddSBarry Smith .seealso: PetscFree(), PetscMalloc(), PetscNew(), PetscLogObjectMemory() 869ad0619ddSBarry Smith 870ad0619ddSBarry Smith Concepts: memory allocation 871ad0619ddSBarry Smith 872ad0619ddSBarry Smith M*/ 873d382aafbSBarry Smith #define PetscNewLog(o,A,b) (PetscNew(A,b) || ((o) ? PetscLogObjectMemory(o,sizeof(A)) : 0)) 874d382aafbSBarry Smith 875d382aafbSBarry Smith /*MC 876d382aafbSBarry Smith PetscFree - Frees memory 877d382aafbSBarry Smith 878eca87e8dSBarry Smith Synopsis: 879eca87e8dSBarry Smith PetscErrorCode PetscFree(void *memory) 880eca87e8dSBarry Smith 881eca87e8dSBarry Smith Not Collective 882eca87e8dSBarry Smith 883d382aafbSBarry Smith Input Parameter: 884d382aafbSBarry Smith . memory - memory to free (the pointer is ALWAYS set to 0 upon sucess) 885d382aafbSBarry Smith 886d382aafbSBarry Smith Level: beginner 887d382aafbSBarry Smith 888d382aafbSBarry Smith Notes: Memory must have been obtained with PetscNew() or PetscMalloc() 889d382aafbSBarry Smith 890d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscFreeVoid() 891d382aafbSBarry Smith 892d382aafbSBarry Smith Concepts: memory allocation 893d382aafbSBarry Smith 894d382aafbSBarry Smith M*/ 89512537b14SJed Brown #define PetscFree(a) ((a) && ((*PetscTrFree)((void*)(a),__LINE__,PETSC_FUNCTION_NAME,__FILE__,__SDIR__) || ((a) = 0,0))) 896d382aafbSBarry Smith 897d382aafbSBarry Smith /*MC 898d382aafbSBarry Smith PetscFreeVoid - Frees memory 899d382aafbSBarry Smith 900d382aafbSBarry Smith Synopsis: 901d382aafbSBarry Smith void PetscFreeVoid(void *memory) 902d382aafbSBarry Smith 903eca87e8dSBarry Smith Not Collective 904eca87e8dSBarry Smith 905eca87e8dSBarry Smith Input Parameter: 906eca87e8dSBarry Smith . memory - memory to free 907eca87e8dSBarry Smith 908d382aafbSBarry Smith Level: beginner 909d382aafbSBarry Smith 910d382aafbSBarry Smith Notes: This is different from PetscFree() in that no error code is returned 911d382aafbSBarry Smith 912d382aafbSBarry Smith .seealso: PetscFree(), PetscNew(), PetscMalloc() 913d382aafbSBarry Smith 914d382aafbSBarry Smith Concepts: memory allocation 915d382aafbSBarry Smith 916d382aafbSBarry Smith M*/ 9172714b66aSJed Brown #define PetscFreeVoid(a) ((*PetscTrFree)((a),__LINE__,PETSC_FUNCTION_NAME,__FILE__,__SDIR__),(a) = 0) 918d382aafbSBarry Smith 919d382aafbSBarry Smith 920d382aafbSBarry Smith /*MC 921d382aafbSBarry Smith PetscFree2 - Frees 2 chunks of memory obtained with PetscMalloc2() 922d382aafbSBarry Smith 923eca87e8dSBarry Smith Synopsis: 924eca87e8dSBarry Smith PetscErrorCode PetscFree2(void *memory1,void *memory2) 925eca87e8dSBarry Smith 926eca87e8dSBarry Smith Not Collective 927eca87e8dSBarry Smith 928d382aafbSBarry Smith Input Parameter: 929d382aafbSBarry Smith + memory1 - memory to free 930d382aafbSBarry Smith - memory2 - 2nd memory to free 931d382aafbSBarry Smith 932d382aafbSBarry Smith Level: developer 933d382aafbSBarry Smith 934d382aafbSBarry Smith Notes: Memory must have been obtained with PetscMalloc2() 935d382aafbSBarry Smith 936d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree() 937d382aafbSBarry Smith 938d382aafbSBarry Smith Concepts: memory allocation 939d382aafbSBarry Smith 940d382aafbSBarry Smith M*/ 941d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 942d382aafbSBarry Smith #define PetscFree2(m1,m2) (PetscFree(m2) || PetscFree(m1)) 943d382aafbSBarry Smith #else 94481dabb53SJed Brown #define PetscFree2(m1,m2) ((m2)=0, PetscFree(m1)) 945d382aafbSBarry Smith #endif 946d382aafbSBarry Smith 947d382aafbSBarry Smith /*MC 948d382aafbSBarry Smith PetscFree3 - Frees 3 chunks of memory obtained with PetscMalloc3() 949d382aafbSBarry Smith 950eca87e8dSBarry Smith Synopsis: 951eca87e8dSBarry Smith PetscErrorCode PetscFree3(void *memory1,void *memory2,void *memory3) 952eca87e8dSBarry Smith 953eca87e8dSBarry Smith Not Collective 954eca87e8dSBarry Smith 955d382aafbSBarry Smith Input Parameter: 956d382aafbSBarry Smith + memory1 - memory to free 957d382aafbSBarry Smith . memory2 - 2nd memory to free 958d382aafbSBarry Smith - memory3 - 3rd memory to free 959d382aafbSBarry Smith 960d382aafbSBarry Smith Level: developer 961d382aafbSBarry Smith 962d382aafbSBarry Smith Notes: Memory must have been obtained with PetscMalloc3() 963d382aafbSBarry Smith 964d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree(), PetscMalloc3() 965d382aafbSBarry Smith 966d382aafbSBarry Smith Concepts: memory allocation 967d382aafbSBarry Smith 968d382aafbSBarry Smith M*/ 969d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 970d382aafbSBarry Smith #define PetscFree3(m1,m2,m3) (PetscFree(m3) || PetscFree(m2) || PetscFree(m1)) 971d382aafbSBarry Smith #else 97281dabb53SJed Brown #define PetscFree3(m1,m2,m3) ((m3)=0,(m2)=0,PetscFree(m1)) 973d382aafbSBarry Smith #endif 974d382aafbSBarry Smith 975d382aafbSBarry Smith /*MC 976d382aafbSBarry Smith PetscFree4 - Frees 4 chunks of memory obtained with PetscMalloc4() 977d382aafbSBarry Smith 978eca87e8dSBarry Smith Synopsis: 979eca87e8dSBarry Smith PetscErrorCode PetscFree4(void *m1,void *m2,void *m3,void *m4) 980eca87e8dSBarry Smith 981eca87e8dSBarry Smith Not Collective 982eca87e8dSBarry Smith 983d382aafbSBarry Smith Input Parameter: 984d382aafbSBarry Smith + m1 - memory to free 985d382aafbSBarry Smith . m2 - 2nd memory to free 986d382aafbSBarry Smith . m3 - 3rd memory to free 987d382aafbSBarry Smith - m4 - 4th memory to free 988d382aafbSBarry Smith 989d382aafbSBarry Smith Level: developer 990d382aafbSBarry Smith 991d382aafbSBarry Smith Notes: Memory must have been obtained with PetscMalloc4() 992d382aafbSBarry Smith 993d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree(), PetscMalloc3(), PetscMalloc4() 994d382aafbSBarry Smith 995d382aafbSBarry Smith Concepts: memory allocation 996d382aafbSBarry Smith 997d382aafbSBarry Smith M*/ 998d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 999d382aafbSBarry Smith #define PetscFree4(m1,m2,m3,m4) (PetscFree(m4) || PetscFree(m3) || PetscFree(m2) || PetscFree(m1)) 1000d382aafbSBarry Smith #else 100181dabb53SJed Brown #define PetscFree4(m1,m2,m3,m4) ((m4)=0,(m3)=0,(m2)=0,PetscFree(m1)) 1002d382aafbSBarry Smith #endif 1003d382aafbSBarry Smith 1004d382aafbSBarry Smith /*MC 1005d382aafbSBarry Smith PetscFree5 - Frees 5 chunks of memory obtained with PetscMalloc5() 1006d382aafbSBarry Smith 1007eca87e8dSBarry Smith Synopsis: 1008eca87e8dSBarry Smith PetscErrorCode PetscFree5(void *m1,void *m2,void *m3,void *m4,void *m5) 1009eca87e8dSBarry Smith 1010eca87e8dSBarry Smith Not Collective 1011eca87e8dSBarry Smith 1012d382aafbSBarry Smith Input Parameter: 1013d382aafbSBarry Smith + m1 - memory to free 1014d382aafbSBarry Smith . m2 - 2nd memory to free 1015d382aafbSBarry Smith . m3 - 3rd memory to free 1016d382aafbSBarry Smith . m4 - 4th memory to free 1017d382aafbSBarry Smith - m5 - 5th memory to free 1018d382aafbSBarry Smith 1019d382aafbSBarry Smith Level: developer 1020d382aafbSBarry Smith 1021d382aafbSBarry Smith Notes: Memory must have been obtained with PetscMalloc5() 1022d382aafbSBarry Smith 1023d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree(), PetscMalloc3(), PetscMalloc4(), PetscMalloc5() 1024d382aafbSBarry Smith 1025d382aafbSBarry Smith Concepts: memory allocation 1026d382aafbSBarry Smith 1027d382aafbSBarry Smith M*/ 1028d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 1029d382aafbSBarry Smith #define PetscFree5(m1,m2,m3,m4,m5) (PetscFree(m5) || PetscFree(m4) || PetscFree(m3) || PetscFree(m2) || PetscFree(m1)) 1030d382aafbSBarry Smith #else 103181dabb53SJed Brown #define PetscFree5(m1,m2,m3,m4,m5) ((m5)=0,(m4)=0,(m3)=0,(m2)=0,PetscFree(m1)) 1032d382aafbSBarry Smith #endif 1033d382aafbSBarry Smith 1034d382aafbSBarry Smith 1035d382aafbSBarry Smith /*MC 1036d382aafbSBarry Smith PetscFree6 - Frees 6 chunks of memory obtained with PetscMalloc6() 1037d382aafbSBarry Smith 1038eca87e8dSBarry Smith Synopsis: 1039eca87e8dSBarry Smith PetscErrorCode PetscFree6(void *m1,void *m2,void *m3,void *m4,void *m5,void *m6) 1040eca87e8dSBarry Smith 1041eca87e8dSBarry Smith Not Collective 1042eca87e8dSBarry Smith 1043d382aafbSBarry Smith Input Parameter: 1044d382aafbSBarry Smith + m1 - memory to free 1045d382aafbSBarry Smith . m2 - 2nd memory to free 1046d382aafbSBarry Smith . m3 - 3rd memory to free 1047d382aafbSBarry Smith . m4 - 4th memory to free 1048d382aafbSBarry Smith . m5 - 5th memory to free 1049d382aafbSBarry Smith - m6 - 6th memory to free 1050d382aafbSBarry Smith 1051d382aafbSBarry Smith 1052d382aafbSBarry Smith Level: developer 1053d382aafbSBarry Smith 1054d382aafbSBarry Smith Notes: Memory must have been obtained with PetscMalloc6() 1055d382aafbSBarry Smith 1056d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree(), PetscMalloc3(), PetscMalloc4(), PetscMalloc5(), PetscMalloc6() 1057d382aafbSBarry Smith 1058d382aafbSBarry Smith Concepts: memory allocation 1059d382aafbSBarry Smith 1060d382aafbSBarry Smith M*/ 1061d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 1062d382aafbSBarry Smith #define PetscFree6(m1,m2,m3,m4,m5,m6) (PetscFree(m6) || PetscFree(m5) || PetscFree(m4) || PetscFree(m3) || PetscFree(m2) || PetscFree(m1)) 1063d382aafbSBarry Smith #else 106481dabb53SJed Brown #define PetscFree6(m1,m2,m3,m4,m5,m6) ((m6)=0,(m5)=0,(m4)=0,(m3)=0,(m2)=0,PetscFree(m1)) 1065d382aafbSBarry Smith #endif 1066d382aafbSBarry Smith 1067d382aafbSBarry Smith /*MC 1068d382aafbSBarry Smith PetscFree7 - Frees 7 chunks of memory obtained with PetscMalloc7() 1069d382aafbSBarry Smith 1070eca87e8dSBarry Smith Synopsis: 1071eca87e8dSBarry Smith PetscErrorCode PetscFree7(void *m1,void *m2,void *m3,void *m4,void *m5,void *m6,void *m7) 1072eca87e8dSBarry Smith 1073eca87e8dSBarry Smith Not Collective 1074eca87e8dSBarry Smith 1075d382aafbSBarry Smith Input Parameter: 1076d382aafbSBarry Smith + m1 - memory to free 1077d382aafbSBarry Smith . m2 - 2nd memory to free 1078d382aafbSBarry Smith . m3 - 3rd memory to free 1079d382aafbSBarry Smith . m4 - 4th memory to free 1080d382aafbSBarry Smith . m5 - 5th memory to free 1081d382aafbSBarry Smith . m6 - 6th memory to free 1082d382aafbSBarry Smith - m7 - 7th memory to free 1083d382aafbSBarry Smith 1084d382aafbSBarry Smith 1085d382aafbSBarry Smith Level: developer 1086d382aafbSBarry Smith 1087d382aafbSBarry Smith Notes: Memory must have been obtained with PetscMalloc7() 1088d382aafbSBarry Smith 1089d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree(), PetscMalloc3(), PetscMalloc4(), PetscMalloc5(), PetscMalloc6(), 1090d382aafbSBarry Smith PetscMalloc7() 1091d382aafbSBarry Smith 1092d382aafbSBarry Smith Concepts: memory allocation 1093d382aafbSBarry Smith 1094d382aafbSBarry Smith M*/ 1095d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 1096d382aafbSBarry Smith #define PetscFree7(m1,m2,m3,m4,m5,m6,m7) (PetscFree(m7) || PetscFree(m6) || PetscFree(m5) || PetscFree(m4) || PetscFree(m3) || PetscFree(m2) || PetscFree(m1)) 1097d382aafbSBarry Smith #else 109881dabb53SJed Brown #define PetscFree7(m1,m2,m3,m4,m5,m6,m7) ((m7)=0,(m6)=0,(m5)=0,(m4)=0,(m3)=0,(m2)=0,PetscFree(m1)) 1099d382aafbSBarry Smith #endif 1100d382aafbSBarry Smith 11017087cfbeSBarry Smith extern PetscErrorCode (*PetscTrMalloc)(size_t,int,const char[],const char[],const char[],void**); 11027087cfbeSBarry Smith extern PetscErrorCode (*PetscTrFree)(void*,int,const char[],const char[],const char[]); 11037087cfbeSBarry Smith extern PetscErrorCode PetscMallocSet(PetscErrorCode (*)(size_t,int,const char[],const char[],const char[],void**),PetscErrorCode (*)(void*,int,const char[],const char[],const char[])); 11047087cfbeSBarry Smith extern PetscErrorCode PetscMallocClear(void); 1105d382aafbSBarry Smith 1106d382aafbSBarry Smith /* 110766d669d6SBarry Smith Routines for tracing memory corruption/bleeding with default PETSc memory allocation 1108d382aafbSBarry Smith */ 11097087cfbeSBarry Smith extern PetscErrorCode PetscMallocDump(FILE *); 11107087cfbeSBarry Smith extern PetscErrorCode PetscMallocDumpLog(FILE *); 11117087cfbeSBarry Smith extern PetscErrorCode PetscMallocGetCurrentUsage(PetscLogDouble *); 11127087cfbeSBarry Smith extern PetscErrorCode PetscMallocGetMaximumUsage(PetscLogDouble *); 11137087cfbeSBarry Smith extern PetscErrorCode PetscMallocDebug(PetscBool); 11147087cfbeSBarry Smith extern PetscErrorCode PetscMallocValidate(int,const char[],const char[],const char[]); 11157087cfbeSBarry Smith extern PetscErrorCode PetscMallocSetDumpLog(void); 1116d382aafbSBarry Smith 1117d382aafbSBarry Smith 1118d382aafbSBarry Smith /*E 1119d382aafbSBarry Smith PetscDataType - Used for handling different basic data types. 1120d382aafbSBarry Smith 1121d382aafbSBarry Smith Level: beginner 1122d382aafbSBarry Smith 1123d382aafbSBarry Smith Developer comment: It would be nice if we could always just use MPI Datatypes, why can we not? 1124d382aafbSBarry Smith 1125d382aafbSBarry Smith .seealso: PetscBinaryRead(), PetscBinaryWrite(), PetscDataTypeToMPIDataType(), 1126d382aafbSBarry Smith PetscDataTypeGetSize() 1127d382aafbSBarry Smith 1128d382aafbSBarry Smith E*/ 1129d382aafbSBarry Smith typedef enum {PETSC_INT = 0,PETSC_DOUBLE = 1,PETSC_COMPLEX = 2, PETSC_LONG = 3 ,PETSC_SHORT = 4,PETSC_FLOAT = 5, 1130557d4da8SBarry Smith PETSC_CHAR = 6,PETSC_BIT_LOGICAL = 7,PETSC_ENUM = 8,PETSC_BOOL=9, PETSC_LONG_DOUBLE = 10} PetscDataType; 1131d382aafbSBarry Smith extern const char *PetscDataTypes[]; 1132d382aafbSBarry Smith 1133d382aafbSBarry Smith #if defined(PETSC_USE_COMPLEX) 1134d382aafbSBarry Smith #define PETSC_SCALAR PETSC_COMPLEX 1135d382aafbSBarry Smith #else 1136ce63c4c1SBarry Smith #if defined(PETSC_USE_REAL_SINGLE) 1137d382aafbSBarry Smith #define PETSC_SCALAR PETSC_FLOAT 1138ce63c4c1SBarry Smith #elif defined(PETSC_USE_REAL_LONG_DOUBLE) 1139d382aafbSBarry Smith #define PETSC_SCALAR PETSC_LONG_DOUBLE 1140d382aafbSBarry Smith #else 1141d382aafbSBarry Smith #define PETSC_SCALAR PETSC_DOUBLE 1142d382aafbSBarry Smith #endif 1143d382aafbSBarry Smith #endif 1144ce63c4c1SBarry Smith #if defined(PETSC_USE_REAL_SINGLE) 1145d382aafbSBarry Smith #define PETSC_REAL PETSC_FLOAT 1146ce63c4c1SBarry Smith #elif defined(PETSC_USE_REAL_LONG_DOUBLE) 1147d382aafbSBarry Smith #define PETSC_REAL PETSC_LONG_DOUBLE 1148d382aafbSBarry Smith #else 1149d382aafbSBarry Smith #define PETSC_REAL PETSC_DOUBLE 1150d382aafbSBarry Smith #endif 1151d382aafbSBarry Smith #define PETSC_FORTRANADDR PETSC_LONG 1152d382aafbSBarry Smith 11537087cfbeSBarry Smith extern PetscErrorCode PetscDataTypeToMPIDataType(PetscDataType,MPI_Datatype*); 11547087cfbeSBarry Smith extern PetscErrorCode PetscMPIDataTypeToPetscDataType(MPI_Datatype,PetscDataType*); 11557087cfbeSBarry Smith extern PetscErrorCode PetscDataTypeGetSize(PetscDataType,size_t*); 1156d382aafbSBarry Smith 1157d382aafbSBarry Smith /* 1158d382aafbSBarry Smith Basic memory and string operations. These are usually simple wrappers 1159d382aafbSBarry Smith around the basic Unix system calls, but a few of them have additional 1160d382aafbSBarry Smith functionality and/or error checking. 1161d382aafbSBarry Smith */ 11627087cfbeSBarry Smith extern PetscErrorCode PetscBitMemcpy(void*,PetscInt,const void*,PetscInt,PetscInt,PetscDataType); 11637087cfbeSBarry Smith extern PetscErrorCode PetscMemmove(void*,void *,size_t); 11647087cfbeSBarry Smith extern PetscErrorCode PetscMemcmp(const void*,const void*,size_t,PetscBool *); 11657087cfbeSBarry Smith extern PetscErrorCode PetscStrlen(const char[],size_t*); 11667087cfbeSBarry Smith extern PetscErrorCode PetscStrToArray(const char[],int*,char ***); 11677087cfbeSBarry Smith extern PetscErrorCode PetscStrToArrayDestroy(int,char **); 11687087cfbeSBarry Smith extern PetscErrorCode PetscStrcmp(const char[],const char[],PetscBool *); 11697087cfbeSBarry Smith extern PetscErrorCode PetscStrgrt(const char[],const char[],PetscBool *); 11707087cfbeSBarry Smith extern PetscErrorCode PetscStrcasecmp(const char[],const char[],PetscBool *); 11717087cfbeSBarry Smith extern PetscErrorCode PetscStrncmp(const char[],const char[],size_t,PetscBool *); 11727087cfbeSBarry Smith extern PetscErrorCode PetscStrcpy(char[],const char[]); 11737087cfbeSBarry Smith extern PetscErrorCode PetscStrcat(char[],const char[]); 11747087cfbeSBarry Smith extern PetscErrorCode PetscStrncat(char[],const char[],size_t); 11757087cfbeSBarry Smith extern PetscErrorCode PetscStrncpy(char[],const char[],size_t); 11767087cfbeSBarry Smith extern PetscErrorCode PetscStrchr(const char[],char,char *[]); 11777087cfbeSBarry Smith extern PetscErrorCode PetscStrtolower(char[]); 11787087cfbeSBarry Smith extern PetscErrorCode PetscStrrchr(const char[],char,char *[]); 11797087cfbeSBarry Smith extern PetscErrorCode PetscStrstr(const char[],const char[],char *[]); 11807087cfbeSBarry Smith extern PetscErrorCode PetscStrrstr(const char[],const char[],char *[]); 11817087cfbeSBarry Smith extern PetscErrorCode PetscStrallocpy(const char[],char *[]); 11827087cfbeSBarry Smith extern PetscErrorCode PetscStrreplace(MPI_Comm,const char[],char[],size_t); 1183d382aafbSBarry Smith 1184d382aafbSBarry Smith /*S 1185d382aafbSBarry Smith PetscToken - 'Token' used for managing tokenizing strings 1186d382aafbSBarry Smith 1187d382aafbSBarry Smith Level: intermediate 1188d382aafbSBarry Smith 1189d382aafbSBarry Smith .seealso: PetscTokenCreate(), PetscTokenFind(), PetscTokenDestroy() 1190d382aafbSBarry Smith S*/ 1191d382aafbSBarry Smith typedef struct _p_PetscToken* PetscToken; 1192d382aafbSBarry Smith 11937087cfbeSBarry Smith extern PetscErrorCode PetscTokenCreate(const char[],const char,PetscToken*); 11947087cfbeSBarry Smith extern PetscErrorCode PetscTokenFind(PetscToken,char *[]); 11957087cfbeSBarry Smith extern PetscErrorCode PetscTokenDestroy(PetscToken); 1196d382aafbSBarry Smith 1197d382aafbSBarry Smith /* 1198d382aafbSBarry Smith These are MPI operations for MPI_Allreduce() etc 1199d382aafbSBarry Smith */ 12007087cfbeSBarry Smith extern MPI_Op PetscMaxSum_Op; 1201ce63c4c1SBarry Smith #if (defined(PETSC_USE_COMPLEX) && !defined(PETSC_HAVE_MPI_C_DOUBLE_COMPLEX)) || defined(PETSC_USE_REAL___FLOAT128) 12027087cfbeSBarry Smith extern MPI_Op MPIU_SUM; 1203d382aafbSBarry Smith #else 1204d382aafbSBarry Smith #define MPIU_SUM MPI_SUM 1205d382aafbSBarry Smith #endif 1206ce63c4c1SBarry Smith #if defined(PETSC_USE_REAL___FLOAT128) 1207d9822059SBarry Smith extern MPI_Op MPIU_MAX; 1208d9822059SBarry Smith extern MPI_Op MPIU_MIN; 1209d9822059SBarry Smith #else 1210d9822059SBarry Smith #define MPIU_MAX MPI_MAX 1211d9822059SBarry Smith #define MPIU_MIN MPI_MIN 1212d9822059SBarry Smith #endif 12137087cfbeSBarry Smith extern PetscErrorCode PetscMaxSum(MPI_Comm,const PetscInt[],PetscInt*,PetscInt*); 1214d382aafbSBarry Smith 1215eb3f98d2SBarry Smith extern PetscErrorCode MPILong_Send(void*,PetscInt,MPI_Datatype,PetscMPIInt,PetscMPIInt,MPI_Comm); 1216eb3f98d2SBarry Smith extern PetscErrorCode MPILong_Recv(void*,PetscInt,MPI_Datatype,PetscMPIInt,PetscMPIInt,MPI_Comm); 1217eb3f98d2SBarry Smith 1218d382aafbSBarry Smith /*S 1219d382aafbSBarry Smith PetscObject - any PETSc object, PetscViewer, Mat, Vec, KSP etc 1220d382aafbSBarry Smith 1221d382aafbSBarry Smith Level: beginner 1222d382aafbSBarry Smith 1223d382aafbSBarry Smith Note: This is the base class from which all objects appear. 1224d382aafbSBarry Smith 12251890ba74SBarry Smith .seealso: PetscObjectDestroy(), PetscObjectView(), PetscObjectGetName(), PetscObjectSetName(), PetscObjectReference(), PetscObjectDereferenc() 1226d382aafbSBarry Smith S*/ 1227d382aafbSBarry Smith typedef struct _p_PetscObject* PetscObject; 1228d382aafbSBarry Smith 1229d382aafbSBarry Smith /*S 1230d382aafbSBarry Smith PetscFList - Linked list of functions, possibly stored in dynamic libraries, accessed 1231d382aafbSBarry Smith by string name 1232d382aafbSBarry Smith 1233d382aafbSBarry Smith Level: advanced 1234d382aafbSBarry Smith 1235d382aafbSBarry Smith .seealso: PetscFListAdd(), PetscFListDestroy() 1236d382aafbSBarry Smith S*/ 1237d382aafbSBarry Smith typedef struct _n_PetscFList *PetscFList; 1238d382aafbSBarry Smith 1239d382aafbSBarry Smith /*E 1240d382aafbSBarry Smith PetscFileMode - Access mode for a file. 1241d382aafbSBarry Smith 1242d382aafbSBarry Smith Level: beginner 1243d382aafbSBarry Smith 1244d382aafbSBarry Smith FILE_MODE_READ - open a file at its beginning for reading 1245d382aafbSBarry Smith 1246d382aafbSBarry Smith FILE_MODE_WRITE - open a file at its beginning for writing (will create if the file does not exist) 1247d382aafbSBarry Smith 1248d382aafbSBarry Smith FILE_MODE_APPEND - open a file at end for writing 1249d382aafbSBarry Smith 1250d382aafbSBarry Smith FILE_MODE_UPDATE - open a file for updating, meaning for reading and writing 1251d382aafbSBarry Smith 1252d382aafbSBarry Smith FILE_MODE_APPEND_UPDATE - open a file for updating, meaning for reading and writing, at the end 1253d382aafbSBarry Smith 1254d382aafbSBarry Smith .seealso: PetscViewerFileSetMode() 1255d382aafbSBarry Smith E*/ 1256d382aafbSBarry Smith typedef enum {FILE_MODE_READ, FILE_MODE_WRITE, FILE_MODE_APPEND, FILE_MODE_UPDATE, FILE_MODE_APPEND_UPDATE} PetscFileMode; 1257d382aafbSBarry Smith 1258d382aafbSBarry Smith #include "petscviewer.h" 1259d382aafbSBarry Smith #include "petscoptions.h" 1260d382aafbSBarry Smith 12610700a824SBarry Smith #define PETSC_SMALLEST_CLASSID 1211211 12627087cfbeSBarry Smith extern PetscClassId PETSC_LARGEST_CLASSID; 12637087cfbeSBarry Smith extern PetscClassId PETSC_OBJECT_CLASSID; 12647087cfbeSBarry Smith extern PetscErrorCode PetscClassIdRegister(const char[],PetscClassId *); 1265d382aafbSBarry Smith 1266d382aafbSBarry Smith /* 1267d382aafbSBarry Smith Routines that get memory usage information from the OS 1268d382aafbSBarry Smith */ 12697087cfbeSBarry Smith extern PetscErrorCode PetscMemoryGetCurrentUsage(PetscLogDouble *); 12707087cfbeSBarry Smith extern PetscErrorCode PetscMemoryGetMaximumUsage(PetscLogDouble *); 12717087cfbeSBarry Smith extern PetscErrorCode PetscMemorySetGetMaximumUsage(void); 12727087cfbeSBarry Smith extern PetscErrorCode PetscMemoryShowUsage(PetscViewer,const char[]); 1273d382aafbSBarry Smith 12747087cfbeSBarry Smith extern PetscErrorCode PetscInfoAllow(PetscBool ,const char []); 12757087cfbeSBarry Smith extern PetscErrorCode PetscGetTime(PetscLogDouble*); 12767087cfbeSBarry Smith extern PetscErrorCode PetscGetCPUTime(PetscLogDouble*); 12777087cfbeSBarry Smith extern PetscErrorCode PetscSleep(PetscReal); 1278d382aafbSBarry Smith 1279d382aafbSBarry Smith /* 1280d382aafbSBarry Smith Initialization of PETSc 1281d382aafbSBarry Smith */ 12827087cfbeSBarry Smith extern PetscErrorCode PetscInitialize(int*,char***,const char[],const char[]); 1283d382aafbSBarry Smith PetscPolymorphicSubroutine(PetscInitialize,(int *argc,char ***args),(argc,args,PETSC_NULL,PETSC_NULL)) 12847087cfbeSBarry Smith extern PetscErrorCode PetscInitializeNoArguments(void); 12857087cfbeSBarry Smith extern PetscErrorCode PetscInitialized(PetscBool *); 12867087cfbeSBarry Smith extern PetscErrorCode PetscFinalized(PetscBool *); 12877087cfbeSBarry Smith extern PetscErrorCode PetscFinalize(void); 128809573ac7SBarry Smith extern PetscErrorCode PetscInitializeFortran(void); 12897087cfbeSBarry Smith extern PetscErrorCode PetscGetArgs(int*,char ***); 12907087cfbeSBarry Smith extern PetscErrorCode PetscGetArguments(char ***); 12917087cfbeSBarry Smith extern PetscErrorCode PetscFreeArguments(char **); 1292d382aafbSBarry Smith 12937087cfbeSBarry Smith extern PetscErrorCode PetscEnd(void); 12947087cfbeSBarry Smith extern PetscErrorCode PetscSysInitializePackage(const char[]); 1295d382aafbSBarry Smith 1296d382aafbSBarry Smith extern MPI_Comm PETSC_COMM_LOCAL_WORLD; 12977087cfbeSBarry Smith extern PetscErrorCode PetscOpenMPMerge(PetscMPIInt,PetscErrorCode (*)(void*),void*); 12987087cfbeSBarry Smith extern PetscErrorCode PetscOpenMPSpawn(PetscMPIInt); 12997087cfbeSBarry Smith extern PetscErrorCode PetscOpenMPFinalize(void); 13007087cfbeSBarry Smith extern PetscErrorCode PetscOpenMPRun(MPI_Comm,PetscErrorCode (*)(MPI_Comm,void *),void*); 13017087cfbeSBarry Smith extern PetscErrorCode PetscOpenMPRunCtx(MPI_Comm,PetscErrorCode (*)(MPI_Comm,void*,void *),void*); 13027087cfbeSBarry Smith extern PetscErrorCode PetscOpenMPFree(MPI_Comm,void*); 13037087cfbeSBarry Smith extern PetscErrorCode PetscOpenMPMalloc(MPI_Comm,size_t,void**); 1304d382aafbSBarry Smith 13057087cfbeSBarry Smith extern PetscErrorCode PetscPythonInitialize(const char[],const char[]); 13067087cfbeSBarry Smith extern PetscErrorCode PetscPythonFinalize(void); 13077087cfbeSBarry Smith extern PetscErrorCode PetscPythonPrintError(void); 13085180491cSLisandro Dalcin extern PetscErrorCode PetscPythonMonitorSet(PetscObject,const char[]); 1309d382aafbSBarry Smith 1310d382aafbSBarry Smith /* 1311d382aafbSBarry Smith These are so that in extern C code we can caste function pointers to non-extern C 1312d382aafbSBarry Smith function pointers. Since the regular C++ code expects its function pointers to be 1313d382aafbSBarry Smith C++. 1314d382aafbSBarry Smith */ 1315d382aafbSBarry Smith typedef void (**PetscVoidStarFunction)(void); 1316d382aafbSBarry Smith typedef void (*PetscVoidFunction)(void); 1317d382aafbSBarry Smith typedef PetscErrorCode (*PetscErrorCodeFunction)(void); 1318d382aafbSBarry Smith 1319d382aafbSBarry Smith /* 1320d382aafbSBarry Smith PetscTryMethod - Queries an object for a method, if it exists then calls it. 1321d382aafbSBarry Smith These are intended to be used only inside PETSc functions. 1322503cfb0cSBarry Smith 1323503cfb0cSBarry Smith Level: developer 1324503cfb0cSBarry Smith 1325503cfb0cSBarry Smith .seealso: PetscUseMethod() 1326d382aafbSBarry Smith */ 1327d382aafbSBarry Smith #define PetscTryMethod(obj,A,B,C) \ 1328d382aafbSBarry Smith 0;{ PetscErrorCode (*f)B, __ierr; \ 1329d382aafbSBarry Smith __ierr = PetscObjectQueryFunction((PetscObject)obj,A,(PetscVoidStarFunction)&f);CHKERRQ(__ierr); \ 1330d382aafbSBarry Smith if (f) {__ierr = (*f)C;CHKERRQ(__ierr);}\ 1331d382aafbSBarry Smith } 1332503cfb0cSBarry Smith 1333503cfb0cSBarry Smith /* 1334503cfb0cSBarry Smith PetscUseMethod - Queries an object for a method, if it exists then calls it, otherwise generates an error. 1335503cfb0cSBarry Smith These are intended to be used only inside PETSc functions. 1336503cfb0cSBarry Smith 1337503cfb0cSBarry Smith Level: developer 1338503cfb0cSBarry Smith 1339503cfb0cSBarry Smith .seealso: PetscTryMethod() 1340503cfb0cSBarry Smith */ 1341d382aafbSBarry Smith #define PetscUseMethod(obj,A,B,C) \ 1342d382aafbSBarry Smith 0;{ PetscErrorCode (*f)B, __ierr; \ 1343d382aafbSBarry Smith __ierr = PetscObjectQueryFunction((PetscObject)obj,A,(PetscVoidStarFunction)&f);CHKERRQ(__ierr); \ 1344d382aafbSBarry Smith if (f) {__ierr = (*f)C;CHKERRQ(__ierr);}\ 1345703c66c1SJed Brown else SETERRQ1(((PetscObject)obj)->comm,PETSC_ERR_SUP,"Cannot locate function %s in object",A); \ 1346d382aafbSBarry Smith } 1347503cfb0cSBarry Smith 1348d382aafbSBarry Smith /* 1349d382aafbSBarry Smith Functions that can act on any PETSc object. 1350d382aafbSBarry Smith */ 1351fcfd50ebSBarry Smith extern PetscErrorCode PetscObjectDestroy(PetscObject*); 13527087cfbeSBarry Smith extern PetscErrorCode PetscObjectGetComm(PetscObject,MPI_Comm *); 13537087cfbeSBarry Smith extern PetscErrorCode PetscObjectGetClassId(PetscObject,PetscClassId *); 1354609db0e0SLisandro Dalcin extern PetscErrorCode PetscObjectGetClassName(PetscObject,const char *[]); 13557087cfbeSBarry Smith extern PetscErrorCode PetscObjectSetType(PetscObject,const char []); 13567087cfbeSBarry Smith extern PetscErrorCode PetscObjectSetPrecision(PetscObject,PetscPrecision); 13577087cfbeSBarry Smith extern PetscErrorCode PetscObjectGetType(PetscObject,const char *[]); 13587087cfbeSBarry Smith extern PetscErrorCode PetscObjectSetName(PetscObject,const char[]); 13597087cfbeSBarry Smith extern PetscErrorCode PetscObjectGetName(PetscObject,const char*[]); 13607087cfbeSBarry Smith extern PetscErrorCode PetscObjectPrintClassNamePrefixType(PetscObject,PetscViewer,const char[]); 13617087cfbeSBarry Smith extern PetscErrorCode PetscObjectSetTabLevel(PetscObject,PetscInt); 13627087cfbeSBarry Smith extern PetscErrorCode PetscObjectGetTabLevel(PetscObject,PetscInt*); 13637087cfbeSBarry Smith extern PetscErrorCode PetscObjectIncrementTabLevel(PetscObject,PetscObject,PetscInt); 13647087cfbeSBarry Smith extern PetscErrorCode PetscObjectReference(PetscObject); 13657087cfbeSBarry Smith extern PetscErrorCode PetscObjectGetReference(PetscObject,PetscInt*); 13667087cfbeSBarry Smith extern PetscErrorCode PetscObjectDereference(PetscObject); 13677087cfbeSBarry Smith extern PetscErrorCode PetscObjectGetNewTag(PetscObject,PetscMPIInt *); 13687087cfbeSBarry Smith extern PetscErrorCode PetscObjectView(PetscObject,PetscViewer); 13697087cfbeSBarry Smith extern PetscErrorCode PetscObjectCompose(PetscObject,const char[],PetscObject); 13706ba4bc90SBarry Smith extern PetscErrorCode PetscObjectRemoveReference(PetscObject,const char[]); 13717087cfbeSBarry Smith extern PetscErrorCode PetscObjectQuery(PetscObject,const char[],PetscObject *); 13727087cfbeSBarry Smith extern PetscErrorCode PetscObjectComposeFunction(PetscObject,const char[],const char[],void (*)(void)); 13737087cfbeSBarry Smith extern PetscErrorCode PetscObjectSetFromOptions(PetscObject); 13747087cfbeSBarry Smith extern PetscErrorCode PetscObjectSetUp(PetscObject); 13757087cfbeSBarry Smith extern PetscErrorCode PetscCommGetNewTag(MPI_Comm,PetscMPIInt *); 13767087cfbeSBarry Smith extern PetscErrorCode PetscObjectAddOptionsHandler(PetscObject,PetscErrorCode (*)(PetscObject,void*),PetscErrorCode (*)(PetscObject,void*),void*); 13777087cfbeSBarry Smith extern PetscErrorCode PetscObjectProcessOptionsHandlers(PetscObject); 13787087cfbeSBarry Smith extern PetscErrorCode PetscObjectDestroyOptionsHandlers(PetscObject); 1379d382aafbSBarry Smith 1380d382aafbSBarry Smith /*MC 1381d382aafbSBarry Smith PetscObjectComposeFunctionDynamic - Associates a function with a given PETSc object. 1382d382aafbSBarry Smith 1383eca87e8dSBarry Smith Synopsis: 1384eca87e8dSBarry Smith PetscErrorCode PetscObjectComposeFunctionDynamic(PetscObject obj,const char name[],const char fname[],void *ptr) 1385eca87e8dSBarry Smith 1386ad4df100SBarry Smith Logically Collective on PetscObject 1387d382aafbSBarry Smith 1388d382aafbSBarry Smith Input Parameters: 1389d382aafbSBarry Smith + obj - the PETSc object; this must be cast with a (PetscObject), for example, 1390d382aafbSBarry Smith PetscObjectCompose((PetscObject)mat,...); 1391d382aafbSBarry Smith . name - name associated with the child function 1392d382aafbSBarry Smith . fname - name of the function 1393d382aafbSBarry Smith - ptr - function pointer (or PETSC_NULL if using dynamic libraries) 1394d382aafbSBarry Smith 1395d382aafbSBarry Smith Level: advanced 1396d382aafbSBarry Smith 1397d382aafbSBarry Smith 1398d382aafbSBarry Smith Notes: 1399d382aafbSBarry Smith To remove a registered routine, pass in a PETSC_NULL rname and fnc(). 1400d382aafbSBarry Smith 1401d382aafbSBarry Smith PetscObjectComposeFunctionDynamic() can be used with any PETSc object (such as 1402d382aafbSBarry Smith Mat, Vec, KSP, SNES, etc.) or any user-provided object. 1403d382aafbSBarry Smith 1404d382aafbSBarry Smith The composed function must be wrapped in a EXTERN_C_BEGIN/END for this to 140520de1f94SBarry Smith work in C++/complex with dynamic link libraries (./configure options --with-shared-libraries --with-dynamic-loading) 1406d382aafbSBarry Smith enabled. 1407d382aafbSBarry Smith 1408d382aafbSBarry Smith Concepts: objects^composing functions 1409d382aafbSBarry Smith Concepts: composing functions 1410d382aafbSBarry Smith Concepts: functions^querying 1411d382aafbSBarry Smith Concepts: objects^querying 1412d382aafbSBarry Smith Concepts: querying objects 1413d382aafbSBarry Smith 1414d382aafbSBarry Smith .seealso: PetscObjectQueryFunction() 1415d382aafbSBarry Smith M*/ 1416d382aafbSBarry Smith #if defined(PETSC_USE_DYNAMIC_LIBRARIES) 1417d382aafbSBarry Smith #define PetscObjectComposeFunctionDynamic(a,b,c,d) PetscObjectComposeFunction(a,b,c,0) 1418d382aafbSBarry Smith #else 1419d382aafbSBarry Smith #define PetscObjectComposeFunctionDynamic(a,b,c,d) PetscObjectComposeFunction(a,b,c,(PetscVoidFunction)(d)) 1420d382aafbSBarry Smith #endif 1421d382aafbSBarry Smith 14227087cfbeSBarry Smith extern PetscErrorCode PetscObjectQueryFunction(PetscObject,const char[],void (**)(void)); 14237087cfbeSBarry Smith extern PetscErrorCode PetscObjectSetOptionsPrefix(PetscObject,const char[]); 14247087cfbeSBarry Smith extern PetscErrorCode PetscObjectAppendOptionsPrefix(PetscObject,const char[]); 14257087cfbeSBarry Smith extern PetscErrorCode PetscObjectPrependOptionsPrefix(PetscObject,const char[]); 14267087cfbeSBarry Smith extern PetscErrorCode PetscObjectGetOptionsPrefix(PetscObject,const char*[]); 14277087cfbeSBarry Smith extern PetscErrorCode PetscObjectAMSPublish(PetscObject); 14287087cfbeSBarry Smith extern PetscErrorCode PetscObjectUnPublish(PetscObject); 14297087cfbeSBarry Smith extern PetscErrorCode PetscObjectChangeTypeName(PetscObject,const char[]); 14307087cfbeSBarry Smith extern PetscErrorCode PetscObjectRegisterDestroy(PetscObject); 14317087cfbeSBarry Smith extern PetscErrorCode PetscObjectRegisterDestroyAll(void); 14327087cfbeSBarry Smith extern PetscErrorCode PetscObjectName(PetscObject); 14337087cfbeSBarry Smith extern PetscErrorCode PetscTypeCompare(PetscObject,const char[],PetscBool *); 14342b12f010SJed Brown extern PetscErrorCode PetscTypeCompareAny(PetscObject,PetscBool*,const char[],...); 14357087cfbeSBarry Smith extern PetscErrorCode PetscRegisterFinalize(PetscErrorCode (*)(void)); 14367087cfbeSBarry Smith extern PetscErrorCode PetscRegisterFinalizeAll(void); 1437d382aafbSBarry Smith 1438d382aafbSBarry Smith /* 1439d382aafbSBarry Smith Defines PETSc error handling. 1440d382aafbSBarry Smith */ 1441d382aafbSBarry Smith #include "petscerror.h" 1442d382aafbSBarry Smith 1443d382aafbSBarry Smith /*S 1444503cfb0cSBarry Smith PetscOList - Linked list of PETSc objects, each accessable by string name 1445d382aafbSBarry Smith 14461d0fab5eSBarry Smith Level: developer 1447d382aafbSBarry Smith 14481d0fab5eSBarry Smith Notes: Used by PetscObjectCompose() and PetscObjectQuery() 14491d0fab5eSBarry Smith 14501d0fab5eSBarry Smith .seealso: PetscOListAdd(), PetscOListDestroy(), PetscOListFind(), PetscObjectCompose(), PetscObjectQuery() 1451d382aafbSBarry Smith S*/ 1452d382aafbSBarry Smith typedef struct _n_PetscOList *PetscOList; 1453d382aafbSBarry Smith 1454fcfd50ebSBarry Smith extern PetscErrorCode PetscOListDestroy(PetscOList*); 14557087cfbeSBarry Smith extern PetscErrorCode PetscOListFind(PetscOList,const char[],PetscObject*); 1456*bfec8eecSBarry Smith extern PetscErrorCode PetscOListReverseFind(PetscOList,PetscObject,char**,PetscBool*); 14577087cfbeSBarry Smith extern PetscErrorCode PetscOListAdd(PetscOList *,const char[],PetscObject); 14586ba4bc90SBarry Smith extern PetscErrorCode PetscOListRemoveReference(PetscOList *,const char[]); 14597087cfbeSBarry Smith extern PetscErrorCode PetscOListDuplicate(PetscOList,PetscOList *); 1460d382aafbSBarry Smith 1461d382aafbSBarry Smith /* 1462503cfb0cSBarry Smith Dynamic library lists. Lists of names of routines in objects or in dynamic 1463d382aafbSBarry Smith link libraries that will be loaded as needed. 1464d382aafbSBarry Smith */ 14657087cfbeSBarry Smith extern PetscErrorCode PetscFListAdd(PetscFList*,const char[],const char[],void (*)(void)); 14667087cfbeSBarry Smith extern PetscErrorCode PetscFListDestroy(PetscFList*); 14674b91b6eaSBarry Smith extern PetscErrorCode PetscFListFind(PetscFList,MPI_Comm,const char[],PetscBool,void (**)(void)); 14687087cfbeSBarry Smith extern PetscErrorCode PetscFListPrintTypes(MPI_Comm,FILE*,const char[],const char[],const char[],const char[],PetscFList,const char[]); 1469d382aafbSBarry Smith #if defined(PETSC_USE_DYNAMIC_LIBRARIES) 1470d382aafbSBarry Smith #define PetscFListAddDynamic(a,b,p,c) PetscFListAdd(a,b,p,0) 1471d382aafbSBarry Smith #else 1472d382aafbSBarry Smith #define PetscFListAddDynamic(a,b,p,c) PetscFListAdd(a,b,p,(void (*)(void))c) 1473d382aafbSBarry Smith #endif 14747087cfbeSBarry Smith extern PetscErrorCode PetscFListDuplicate(PetscFList,PetscFList *); 14757087cfbeSBarry Smith extern PetscErrorCode PetscFListView(PetscFList,PetscViewer); 14767087cfbeSBarry Smith extern PetscErrorCode PetscFListConcat(const char [],const char [],char []); 14777087cfbeSBarry Smith extern PetscErrorCode PetscFListGet(PetscFList,char ***,int*); 1478d382aafbSBarry Smith 1479d382aafbSBarry Smith /*S 1480d382aafbSBarry Smith PetscDLLibrary - Linked list of dynamics libraries to search for functions 1481d382aafbSBarry Smith 1482d382aafbSBarry Smith Level: advanced 1483d382aafbSBarry Smith 148420de1f94SBarry Smith --with-shared-libraries --with-dynamic-loading must be used with ./configure to use dynamic libraries 1485d382aafbSBarry Smith 1486d382aafbSBarry Smith .seealso: PetscDLLibraryOpen() 1487d382aafbSBarry Smith S*/ 1488d382aafbSBarry Smith typedef struct _n_PetscDLLibrary *PetscDLLibrary; 14897087cfbeSBarry Smith extern PetscDLLibrary DLLibrariesLoaded; 14907087cfbeSBarry Smith extern PetscErrorCode PetscDLLibraryAppend(MPI_Comm,PetscDLLibrary *,const char[]); 14917087cfbeSBarry Smith extern PetscErrorCode PetscDLLibraryPrepend(MPI_Comm,PetscDLLibrary *,const char[]); 14927087cfbeSBarry Smith extern PetscErrorCode PetscDLLibrarySym(MPI_Comm,PetscDLLibrary *,const char[],const char[],void **); 14937087cfbeSBarry Smith extern PetscErrorCode PetscDLLibraryPrintPath(PetscDLLibrary); 14947087cfbeSBarry Smith extern PetscErrorCode PetscDLLibraryRetrieve(MPI_Comm,const char[],char *,size_t,PetscBool *); 14957087cfbeSBarry Smith extern PetscErrorCode PetscDLLibraryOpen(MPI_Comm,const char[],PetscDLLibrary *); 14967087cfbeSBarry Smith extern PetscErrorCode PetscDLLibraryClose(PetscDLLibrary); 14977087cfbeSBarry Smith extern PetscErrorCode PetscDLLibraryCCAAppend(MPI_Comm,PetscDLLibrary *,const char[]); 1498d382aafbSBarry Smith 1499d382aafbSBarry Smith /* 150005846914SDmitry Karpeev PetscFwk support. Needs to be documented. 150105846914SDmitry Karpeev Logically it is an extension of PetscDLLXXX, PetscObjectCompose, etc. 150205846914SDmitry Karpeev */ 150305846914SDmitry Karpeev #include "petscfwk.h" 150405846914SDmitry Karpeev 150505846914SDmitry Karpeev /* 1506d382aafbSBarry Smith Useful utility routines 1507d382aafbSBarry Smith */ 15087087cfbeSBarry Smith extern PetscErrorCode PetscSplitOwnership(MPI_Comm,PetscInt*,PetscInt*); 15097087cfbeSBarry Smith extern PetscErrorCode PetscSplitOwnershipBlock(MPI_Comm,PetscInt,PetscInt*,PetscInt*); 15107087cfbeSBarry Smith extern PetscErrorCode PetscSequentialPhaseBegin(MPI_Comm,PetscMPIInt); 1511d382aafbSBarry Smith PetscPolymorphicSubroutine(PetscSequentialPhaseBegin,(MPI_Comm comm),(comm,1)) 1512d382aafbSBarry Smith PetscPolymorphicSubroutine(PetscSequentialPhaseBegin,(void),(PETSC_COMM_WORLD,1)) 15137087cfbeSBarry Smith extern PetscErrorCode PetscSequentialPhaseEnd(MPI_Comm,PetscMPIInt); 1514d382aafbSBarry Smith PetscPolymorphicSubroutine(PetscSequentialPhaseEnd,(MPI_Comm comm),(comm,1)) 1515d382aafbSBarry Smith PetscPolymorphicSubroutine(PetscSequentialPhaseEnd,(void),(PETSC_COMM_WORLD,1)) 15167087cfbeSBarry Smith extern PetscErrorCode PetscBarrier(PetscObject); 15177087cfbeSBarry Smith extern PetscErrorCode PetscMPIDump(FILE*); 1518d382aafbSBarry Smith 1519503cfb0cSBarry Smith /* 1520ace3abfcSBarry Smith PetscNot - negates a logical type value and returns result as a PetscBool 1521503cfb0cSBarry Smith 1522503cfb0cSBarry Smith Notes: This is useful in cases like 1523503cfb0cSBarry Smith $ int *a; 1524ace3abfcSBarry Smith $ PetscBool flag = PetscNot(a) 1525ace3abfcSBarry Smith where !a does not return a PetscBool because we cannot provide a cast from int to PetscBool in C. 1526503cfb0cSBarry Smith */ 1527d382aafbSBarry Smith #define PetscNot(a) ((a) ? PETSC_FALSE : PETSC_TRUE) 1528503cfb0cSBarry Smith 1529d382aafbSBarry Smith /* 1530d382aafbSBarry Smith Defines basic graphics available from PETSc. 1531d382aafbSBarry Smith */ 1532d382aafbSBarry Smith #include "petscdraw.h" 1533d382aafbSBarry Smith 1534d382aafbSBarry Smith /* 1535d382aafbSBarry Smith Defines the base data structures for all PETSc objects 1536d382aafbSBarry Smith */ 1537d382aafbSBarry Smith #include "private/petscimpl.h" 1538503cfb0cSBarry Smith 1539238ccf28SShri Abhyankar 1540d382aafbSBarry Smith /*MC 1541d382aafbSBarry Smith PetscErrorPrintf - Prints error messages. 1542d382aafbSBarry Smith 1543d382aafbSBarry Smith Synopsis: 1544d382aafbSBarry Smith PetscErrorCode (*PetscErrorPrintf)(const char format[],...); 1545d382aafbSBarry Smith 1546eca87e8dSBarry Smith Not Collective 1547eca87e8dSBarry Smith 1548d382aafbSBarry Smith Input Parameters: 1549d382aafbSBarry Smith . format - the usual printf() format string 1550d382aafbSBarry Smith 1551d382aafbSBarry Smith Options Database Keys: 1552d382aafbSBarry Smith + -error_output_stdout - cause error messages to be printed to stdout instead of the 1553d382aafbSBarry Smith (default) stderr 1554d382aafbSBarry Smith - -error_output_none to turn off all printing of error messages (does not change the way the 1555d382aafbSBarry Smith error is handled.) 1556d382aafbSBarry Smith 1557d382aafbSBarry Smith Notes: Use 1558d382aafbSBarry Smith $ PetscErrorPrintf = PetscErrorPrintfNone; to turn off all printing of error messages (does not change the way the 1559d382aafbSBarry Smith $ error is handled.) and 1560d382aafbSBarry Smith $ PetscErrorPrintf = PetscErrorPrintfDefault; to turn it back on 1561c9a19010SBarry Smith $ of you can use your own function 1562d382aafbSBarry Smith 1563d382aafbSBarry Smith Use 1564d382aafbSBarry Smith PETSC_STDERR = FILE* obtained from a file open etc. to have stderr printed to the file. 1565d382aafbSBarry Smith PETSC_STDOUT = FILE* obtained from a file open etc. to have stdout printed to the file. 1566d382aafbSBarry Smith 1567d382aafbSBarry Smith Use 1568d382aafbSBarry Smith PetscPushErrorHandler() to provide your own error handler that determines what kind of messages to print 1569d382aafbSBarry Smith 1570d382aafbSBarry Smith Level: developer 1571d382aafbSBarry Smith 1572d382aafbSBarry Smith Fortran Note: 1573d382aafbSBarry Smith This routine is not supported in Fortran. 1574d382aafbSBarry Smith 1575d382aafbSBarry Smith Concepts: error messages^printing 1576d382aafbSBarry Smith Concepts: printing^error messages 1577d382aafbSBarry Smith 1578c9a19010SBarry Smith .seealso: PetscFPrintf(), PetscSynchronizedPrintf(), PetscHelpPrintf(), PetscPrintf(), PetscErrorHandlerPush(), PetscVFPrintf(), PetscHelpPrintf() 1579d382aafbSBarry Smith M*/ 15807087cfbeSBarry Smith extern PetscErrorCode (*PetscErrorPrintf)(const char[],...); 1581d382aafbSBarry Smith 1582d382aafbSBarry Smith /*MC 1583d382aafbSBarry Smith PetscHelpPrintf - Prints help messages. 1584d382aafbSBarry Smith 1585d382aafbSBarry Smith Synopsis: 1586d382aafbSBarry Smith PetscErrorCode (*PetscHelpPrintf)(const char format[],...); 1587d382aafbSBarry Smith 1588eca87e8dSBarry Smith Not Collective 1589eca87e8dSBarry Smith 1590d382aafbSBarry Smith Input Parameters: 1591d382aafbSBarry Smith . format - the usual printf() format string 1592d382aafbSBarry Smith 1593d382aafbSBarry Smith Level: developer 1594d382aafbSBarry Smith 1595d382aafbSBarry Smith Fortran Note: 1596d382aafbSBarry Smith This routine is not supported in Fortran. 1597d382aafbSBarry Smith 1598d382aafbSBarry Smith Concepts: help messages^printing 1599d382aafbSBarry Smith Concepts: printing^help messages 1600d382aafbSBarry Smith 1601d382aafbSBarry Smith .seealso: PetscFPrintf(), PetscSynchronizedPrintf(), PetscErrorPrintf() 1602d382aafbSBarry Smith M*/ 16037087cfbeSBarry Smith extern PetscErrorCode (*PetscHelpPrintf)(MPI_Comm,const char[],...); 1604d382aafbSBarry Smith 1605fcfd50ebSBarry Smith /* 1606fcfd50ebSBarry Smith Defines PETSc profiling. 1607fcfd50ebSBarry Smith */ 1608fcfd50ebSBarry Smith #include "petsclog.h" 1609fcfd50ebSBarry Smith 1610fcfd50ebSBarry Smith /* 1611fcfd50ebSBarry Smith For locking, unlocking and destroying AMS memories associated with PETSc objects. ams.h is included in petscviewer.h 1612fcfd50ebSBarry Smith */ 1613fcfd50ebSBarry Smith #if defined(PETSC_HAVE_AMS) 1614fcfd50ebSBarry Smith extern PetscBool PetscAMSPublishAll; 1615fcfd50ebSBarry Smith #define PetscObjectTakeAccess(obj) ((((PetscObject)(obj))->amem == -1) ? 0 : AMS_Memory_take_access(((PetscObject)(obj))->amem)) 1616fcfd50ebSBarry Smith #define PetscObjectGrantAccess(obj) ((((PetscObject)(obj))->amem == -1) ? 0 : AMS_Memory_grant_access(((PetscObject)(obj))->amem)) 1617fcfd50ebSBarry Smith #define PetscObjectDepublish(obj) ((((PetscObject)(obj))->amem == -1) ? 0 : AMS_Memory_destroy(((PetscObject)(obj))->amem));((PetscObject)(obj))->amem = -1; 1618fcfd50ebSBarry Smith #else 1619fcfd50ebSBarry Smith #define PetscObjectTakeAccess(obj) 0 1620fcfd50ebSBarry Smith #define PetscObjectGrantAccess(obj) 0 1621fcfd50ebSBarry Smith #define PetscObjectDepublish(obj) 0 1622fcfd50ebSBarry Smith #endif 1623fcfd50ebSBarry Smith 1624fcfd50ebSBarry Smith /* 1625fcfd50ebSBarry Smith Simple PETSc parallel IO for ASCII printing 1626fcfd50ebSBarry Smith */ 1627fcfd50ebSBarry Smith extern PetscErrorCode PetscFixFilename(const char[],char[]); 1628fcfd50ebSBarry Smith extern PetscErrorCode PetscFOpen(MPI_Comm,const char[],const char[],FILE**); 1629fcfd50ebSBarry Smith extern PetscErrorCode PetscFClose(MPI_Comm,FILE*); 1630fcfd50ebSBarry Smith extern PetscErrorCode PetscFPrintf(MPI_Comm,FILE*,const char[],...); 1631fcfd50ebSBarry Smith extern PetscErrorCode PetscPrintf(MPI_Comm,const char[],...); 1632fcfd50ebSBarry Smith extern PetscErrorCode PetscSNPrintf(char*,size_t,const char [],...); 1633fcfd50ebSBarry Smith 1634fcfd50ebSBarry Smith 1635fcfd50ebSBarry Smith 1636fcfd50ebSBarry Smith /* These are used internally by PETSc ASCII IO routines*/ 1637fcfd50ebSBarry Smith #include <stdarg.h> 1638fcfd50ebSBarry Smith extern PetscErrorCode PetscVSNPrintf(char*,size_t,const char[],size_t*,va_list); 1639fcfd50ebSBarry Smith extern PetscErrorCode (*PetscVFPrintf)(FILE*,const char[],va_list); 1640fcfd50ebSBarry Smith extern PetscErrorCode PetscVFPrintfDefault(FILE*,const char[],va_list); 1641fcfd50ebSBarry Smith 1642fcfd50ebSBarry Smith #if defined(PETSC_HAVE_MATLAB_ENGINE) 1643fcfd50ebSBarry Smith extern PetscErrorCode PetscVFPrintf_Matlab(FILE*,const char[],va_list); 1644fcfd50ebSBarry Smith #endif 1645fcfd50ebSBarry Smith 164609573ac7SBarry Smith extern PetscErrorCode PetscErrorPrintfDefault(const char [],...); 164709573ac7SBarry Smith extern PetscErrorCode PetscErrorPrintfNone(const char [],...); 164809573ac7SBarry Smith extern PetscErrorCode PetscHelpPrintfDefault(MPI_Comm,const char [],...); 1649d382aafbSBarry Smith 1650d382aafbSBarry Smith #if defined(PETSC_HAVE_POPEN) 16517087cfbeSBarry Smith extern PetscErrorCode PetscPOpen(MPI_Comm,const char[],const char[],const char[],FILE **); 16527087cfbeSBarry Smith extern PetscErrorCode PetscPClose(MPI_Comm,FILE*); 1653d382aafbSBarry Smith #endif 1654d382aafbSBarry Smith 16557087cfbeSBarry Smith extern PetscErrorCode PetscSynchronizedPrintf(MPI_Comm,const char[],...); 16567087cfbeSBarry Smith extern PetscErrorCode PetscSynchronizedFPrintf(MPI_Comm,FILE*,const char[],...); 16577087cfbeSBarry Smith extern PetscErrorCode PetscSynchronizedFlush(MPI_Comm); 16587087cfbeSBarry Smith extern PetscErrorCode PetscSynchronizedFGets(MPI_Comm,FILE*,size_t,char[]); 16597087cfbeSBarry Smith extern PetscErrorCode PetscStartMatlab(MPI_Comm,const char[],const char[],FILE**); 16607087cfbeSBarry Smith extern PetscErrorCode PetscStartJava(MPI_Comm,const char[],const char[],FILE**); 16617087cfbeSBarry Smith extern PetscErrorCode PetscGetPetscDir(const char*[]); 1662d382aafbSBarry Smith 16637087cfbeSBarry Smith extern PetscErrorCode PetscPopUpSelect(MPI_Comm,const char*,const char*,int,const char**,int*); 1664d382aafbSBarry Smith 1665d382aafbSBarry Smith /*S 1666d382aafbSBarry Smith PetscContainer - Simple PETSc object that contains a pointer to any required data 1667d382aafbSBarry Smith 1668d382aafbSBarry Smith Level: advanced 1669d382aafbSBarry Smith 1670d382aafbSBarry Smith .seealso: PetscObject, PetscContainerCreate() 1671d382aafbSBarry Smith S*/ 16727087cfbeSBarry Smith extern PetscClassId PETSC_CONTAINER_CLASSID; 1673d382aafbSBarry Smith typedef struct _p_PetscContainer* PetscContainer; 16747087cfbeSBarry Smith extern PetscErrorCode PetscContainerGetPointer(PetscContainer,void **); 16757087cfbeSBarry Smith extern PetscErrorCode PetscContainerSetPointer(PetscContainer,void *); 1676fcfd50ebSBarry Smith extern PetscErrorCode PetscContainerDestroy(PetscContainer*); 16777087cfbeSBarry Smith extern PetscErrorCode PetscContainerCreate(MPI_Comm,PetscContainer *); 16787087cfbeSBarry Smith extern PetscErrorCode PetscContainerSetUserDestroy(PetscContainer, PetscErrorCode (*)(void*)); 1679d382aafbSBarry Smith 1680d382aafbSBarry Smith /* 1681d382aafbSBarry Smith For use in debuggers 1682d382aafbSBarry Smith */ 16837087cfbeSBarry Smith extern PetscMPIInt PetscGlobalRank; 16847087cfbeSBarry Smith extern PetscMPIInt PetscGlobalSize; 16857087cfbeSBarry Smith extern PetscErrorCode PetscIntView(PetscInt,const PetscInt[],PetscViewer); 16867087cfbeSBarry Smith extern PetscErrorCode PetscRealView(PetscInt,const PetscReal[],PetscViewer); 16877087cfbeSBarry Smith extern PetscErrorCode PetscScalarView(PetscInt,const PetscScalar[],PetscViewer); 1688d382aafbSBarry Smith 1689d382aafbSBarry Smith #if defined(PETSC_HAVE_MEMORY_H) 1690d382aafbSBarry Smith #include <memory.h> 1691d382aafbSBarry Smith #endif 1692d382aafbSBarry Smith #if defined(PETSC_HAVE_STDLIB_H) 1693d382aafbSBarry Smith #include <stdlib.h> 1694d382aafbSBarry Smith #endif 1695d382aafbSBarry Smith #if defined(PETSC_HAVE_STRINGS_H) 1696d382aafbSBarry Smith #include <strings.h> 1697d382aafbSBarry Smith #endif 1698d382aafbSBarry Smith #if defined(PETSC_HAVE_STRING_H) 1699d382aafbSBarry Smith #include <string.h> 1700d382aafbSBarry Smith #endif 17016c7e564aSBarry Smith 17026c7e564aSBarry Smith 1703d382aafbSBarry Smith #if defined(PETSC_HAVE_XMMINTRIN_H) 1704d382aafbSBarry Smith #include <xmmintrin.h> 1705d382aafbSBarry Smith #endif 1706d382aafbSBarry Smith #if defined(PETSC_HAVE_STDINT_H) 1707d382aafbSBarry Smith #include <stdint.h> 1708d382aafbSBarry Smith #endif 1709d382aafbSBarry Smith 1710fcfd50ebSBarry Smith #undef __FUNCT__ 1711fcfd50ebSBarry Smith #define __FUNCT__ "PetscMemcpy" 1712d382aafbSBarry Smith /*@C 1713d382aafbSBarry Smith PetscMemcpy - Copies n bytes, beginning at location b, to the space 1714d382aafbSBarry Smith beginning at location a. The two memory regions CANNOT overlap, use 1715d382aafbSBarry Smith PetscMemmove() in that case. 1716d382aafbSBarry Smith 1717d382aafbSBarry Smith Not Collective 1718d382aafbSBarry Smith 1719d382aafbSBarry Smith Input Parameters: 1720d382aafbSBarry Smith + b - pointer to initial memory space 1721d382aafbSBarry Smith - n - length (in bytes) of space to copy 1722d382aafbSBarry Smith 1723d382aafbSBarry Smith Output Parameter: 1724d382aafbSBarry Smith . a - pointer to copy space 1725d382aafbSBarry Smith 1726d382aafbSBarry Smith Level: intermediate 1727d382aafbSBarry Smith 1728d382aafbSBarry Smith Compile Option: 1729d382aafbSBarry Smith PETSC_PREFER_DCOPY_FOR_MEMCPY will cause the BLAS dcopy() routine to be used 1730d382aafbSBarry Smith for memory copies on double precision values. 1731d382aafbSBarry Smith PETSC_PREFER_COPY_FOR_MEMCPY will cause C code to be used 1732d382aafbSBarry Smith for memory copies on double precision values. 1733d382aafbSBarry Smith PETSC_PREFER_FORTRAN_FORMEMCPY will cause Fortran code to be used 1734d382aafbSBarry Smith for memory copies on double precision values. 1735d382aafbSBarry Smith 1736d382aafbSBarry Smith Note: 1737d382aafbSBarry Smith This routine is analogous to memcpy(). 1738d382aafbSBarry Smith 1739503cfb0cSBarry Smith Developer Note: this is inlined for fastest performance 1740503cfb0cSBarry Smith 1741d382aafbSBarry Smith Concepts: memory^copying 1742d382aafbSBarry Smith Concepts: copying^memory 1743d382aafbSBarry Smith 1744d382aafbSBarry Smith .seealso: PetscMemmove() 1745d382aafbSBarry Smith 1746d382aafbSBarry Smith @*/ 17477087cfbeSBarry Smith PETSC_STATIC_INLINE PetscErrorCode PetscMemcpy(void *a,const void *b,size_t n) 1748d382aafbSBarry Smith { 1749d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 1750d382aafbSBarry Smith unsigned long al = (unsigned long) a,bl = (unsigned long) b; 1751d382aafbSBarry Smith unsigned long nl = (unsigned long) n; 1752a7e36092SMatthew G Knepley PetscFunctionBegin; 1753e32f2f54SBarry Smith if (n > 0 && !b) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_NULL,"Trying to copy from a null pointer"); 1754e32f2f54SBarry Smith if (n > 0 && !a) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_NULL,"Trying to copy to a null pointer"); 1755a7e36092SMatthew G Knepley #else 1756d382aafbSBarry Smith PetscFunctionBegin; 1757a7e36092SMatthew G Knepley #endif 1758d382aafbSBarry Smith if (a != b) { 1759d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 1760d382aafbSBarry Smith if ((al > bl && (al - bl) < nl) || (bl - al) < nl) { 1761e32f2f54SBarry Smith SETERRQ3(PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"Memory regions overlap: either use PetscMemmov()\n\ 1762d382aafbSBarry Smith or make sure your copy regions and lengths are correct. \n\ 1763d382aafbSBarry Smith Length (bytes) %ld first address %ld second address %ld",nl,al,bl); 1764d382aafbSBarry Smith } 1765d382aafbSBarry Smith #endif 1766d382aafbSBarry Smith #if (defined(PETSC_PREFER_DCOPY_FOR_MEMCPY) || defined(PETSC_PREFER_COPY_FOR_MEMCPY) || defined(PETSC_PREFER_FORTRAN_FORMEMCPY)) 1767d382aafbSBarry Smith if (!(((long) a) % sizeof(PetscScalar)) && !(n % sizeof(PetscScalar))) { 1768d382aafbSBarry Smith size_t len = n/sizeof(PetscScalar); 1769d382aafbSBarry Smith #if defined(PETSC_PREFER_DCOPY_FOR_MEMCPY) 1770d382aafbSBarry Smith PetscBLASInt one = 1,blen = PetscBLASIntCast(len); 1771d382aafbSBarry Smith BLAScopy_(&blen,(PetscScalar *)b,&one,(PetscScalar *)a,&one); 1772d382aafbSBarry Smith #elif defined(PETSC_PREFER_FORTRAN_FORMEMCPY) 1773d382aafbSBarry Smith fortrancopy_(&len,(PetscScalar*)b,(PetscScalar*)a); 1774d382aafbSBarry Smith #else 1775d382aafbSBarry Smith size_t i; 1776d382aafbSBarry Smith PetscScalar *x = (PetscScalar*)b, *y = (PetscScalar*)a; 1777d382aafbSBarry Smith for (i=0; i<len; i++) y[i] = x[i]; 1778d382aafbSBarry Smith #endif 1779d382aafbSBarry Smith } else { 1780d382aafbSBarry Smith memcpy((char*)(a),(char*)(b),n); 1781d382aafbSBarry Smith } 1782d382aafbSBarry Smith #else 1783d382aafbSBarry Smith memcpy((char*)(a),(char*)(b),n); 1784d382aafbSBarry Smith #endif 1785d382aafbSBarry Smith } 1786d382aafbSBarry Smith PetscFunctionReturn(0); 1787d382aafbSBarry Smith } 1788d382aafbSBarry Smith 1789d382aafbSBarry Smith /*@C 1790d382aafbSBarry Smith PetscMemzero - Zeros the specified memory. 1791d382aafbSBarry Smith 1792d382aafbSBarry Smith Not Collective 1793d382aafbSBarry Smith 1794d382aafbSBarry Smith Input Parameters: 1795d382aafbSBarry Smith + a - pointer to beginning memory location 1796d382aafbSBarry Smith - n - length (in bytes) of memory to initialize 1797d382aafbSBarry Smith 1798d382aafbSBarry Smith Level: intermediate 1799d382aafbSBarry Smith 1800d382aafbSBarry Smith Compile Option: 1801d382aafbSBarry Smith PETSC_PREFER_BZERO - on certain machines (the IBM RS6000) the bzero() routine happens 1802d382aafbSBarry Smith to be faster than the memset() routine. This flag causes the bzero() routine to be used. 1803d382aafbSBarry Smith 1804503cfb0cSBarry Smith Developer Note: this is inlined for fastest performance 1805503cfb0cSBarry Smith 1806d382aafbSBarry Smith Concepts: memory^zeroing 1807d382aafbSBarry Smith Concepts: zeroing^memory 1808d382aafbSBarry Smith 1809d382aafbSBarry Smith .seealso: PetscMemcpy() 1810d382aafbSBarry Smith @*/ 18117087cfbeSBarry Smith PETSC_STATIC_INLINE PetscErrorCode PetscMemzero(void *a,size_t n) 1812d382aafbSBarry Smith { 1813d382aafbSBarry Smith if (n > 0) { 1814d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 1815e32f2f54SBarry Smith if (!a) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_NULL,"Trying to zero at a null pointer"); 1816d382aafbSBarry Smith #endif 1817d382aafbSBarry Smith #if defined(PETSC_PREFER_ZERO_FOR_MEMZERO) 1818d382aafbSBarry Smith if (!(((long) a) % sizeof(PetscScalar)) && !(n % sizeof(PetscScalar))) { 1819d382aafbSBarry Smith size_t i,len = n/sizeof(PetscScalar); 1820d382aafbSBarry Smith PetscScalar *x = (PetscScalar*)a; 1821d382aafbSBarry Smith for (i=0; i<len; i++) x[i] = 0.0; 1822d382aafbSBarry Smith } else { 1823d382aafbSBarry Smith #elif defined(PETSC_PREFER_FORTRAN_FOR_MEMZERO) 1824d382aafbSBarry Smith if (!(((long) a) % sizeof(PetscScalar)) && !(n % sizeof(PetscScalar))) { 1825d382aafbSBarry Smith PetscInt len = n/sizeof(PetscScalar); 1826d382aafbSBarry Smith fortranzero_(&len,(PetscScalar*)a); 1827d382aafbSBarry Smith } else { 1828d382aafbSBarry Smith #endif 1829d382aafbSBarry Smith #if defined(PETSC_PREFER_BZERO) 1830d382aafbSBarry Smith bzero((char *)a,n); 1831d382aafbSBarry Smith #else 1832d382aafbSBarry Smith memset((char*)a,0,n); 1833d382aafbSBarry Smith #endif 1834d382aafbSBarry Smith #if defined(PETSC_PREFER_ZERO_FOR_MEMZERO) || defined(PETSC_PREFER_FORTRAN_FOR_MEMZERO) 1835d382aafbSBarry Smith } 1836d382aafbSBarry Smith #endif 1837d382aafbSBarry Smith } 1838d382aafbSBarry Smith return 0; 1839d382aafbSBarry Smith } 1840d382aafbSBarry Smith 1841d382aafbSBarry Smith /*MC 1842d382aafbSBarry Smith PetscPrefetchBlock - Prefetches a block of memory 1843d382aafbSBarry Smith 1844eca87e8dSBarry Smith Synopsis: 1845eca87e8dSBarry Smith void PetscPrefetchBlock(const anytype *a,size_t n,int rw,int t) 1846eca87e8dSBarry Smith 1847d382aafbSBarry Smith Not Collective 1848d382aafbSBarry Smith 1849d382aafbSBarry Smith Input Parameters: 1850d382aafbSBarry Smith + a - pointer to first element to fetch (any type but usually PetscInt or PetscScalar) 1851d382aafbSBarry Smith . n - number of elements to fetch 1852d382aafbSBarry Smith . rw - 1 if the memory will be written to, otherwise 0 (ignored by many processors) 185350d8bf02SJed Brown - t - temporal locality (PETSC_PREFETCH_HINT_{NTA,T0,T1,T2}), see note 1854d382aafbSBarry Smith 1855d382aafbSBarry Smith Level: developer 1856d382aafbSBarry Smith 1857d382aafbSBarry Smith Notes: 1858d382aafbSBarry Smith The last two arguments (rw and t) must be compile-time constants. 1859d382aafbSBarry Smith 186050d8bf02SJed Brown Adopting Intel's x86/x86-64 conventions, there are four levels of temporal locality. Not all architectures offer 186150d8bf02SJed Brown equivalent locality hints, but the following macros are always defined to their closest analogue. 186250d8bf02SJed Brown + PETSC_PREFETCH_HINT_NTA - Non-temporal. Prefetches directly to L1, evicts to memory (skips higher level cache unless it was already there when prefetched). 186363cf1ef0SJed Brown . PETSC_PREFETCH_HINT_T0 - Fetch to all levels of cache and evict to the closest level. Use this when the memory will be reused regularly despite necessary eviction from L1. 186463cf1ef0SJed Brown . PETSC_PREFETCH_HINT_T1 - Fetch to level 2 and higher (not L1). 186563cf1ef0SJed Brown - PETSC_PREFETCH_HINT_T2 - Fetch to high-level cache only. (On many systems, T0 and T1 are equivalent.) 1866d382aafbSBarry Smith 1867d382aafbSBarry Smith This function does nothing on architectures that do not support prefetch and never errors (even if passed an invalid 1868d382aafbSBarry Smith address). 1869d382aafbSBarry Smith 1870d382aafbSBarry Smith Concepts: memory 1871d382aafbSBarry Smith M*/ 1872d382aafbSBarry Smith #define PetscPrefetchBlock(a,n,rw,t) do { \ 1873d382aafbSBarry Smith const char *_p = (const char*)(a),*_end = (const char*)((a)+(n)); \ 1874d382aafbSBarry Smith for ( ; _p < _end; _p += PETSC_LEVEL1_DCACHE_LINESIZE) PETSC_Prefetch(_p,(rw),(t)); \ 1875d382aafbSBarry Smith } while (0) 1876d382aafbSBarry Smith 1877d382aafbSBarry Smith /* 1878e3c5b3baSBarry Smith Allows accessing MATLAB Engine 1879d382aafbSBarry Smith */ 1880d382aafbSBarry Smith #include "petscmatlab.h" 1881d382aafbSBarry Smith 1882d382aafbSBarry Smith /* 1883d382aafbSBarry Smith Determine if some of the kernel computation routines use 1884d382aafbSBarry Smith Fortran (rather than C) for the numerical calculations. On some machines 1885d382aafbSBarry Smith and compilers (like complex numbers) the Fortran version of the routines 1886d382aafbSBarry Smith is faster than the C/C++ versions. The flag --with-fortran-kernels 1887e2e64c6bSBarry Smith should be used with ./configure to turn these on. 1888d382aafbSBarry Smith */ 1889d382aafbSBarry Smith #if defined(PETSC_USE_FORTRAN_KERNELS) 1890d382aafbSBarry Smith 1891d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MULTCRL) 1892d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MULTCRL 1893d382aafbSBarry Smith #endif 1894d382aafbSBarry Smith 18955a11e1b2SBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MULTAIJPERM) 18965a11e1b2SBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MULTAIJPERM 1897d382aafbSBarry Smith #endif 1898d382aafbSBarry Smith 1899d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MULTAIJ) 1900d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MULTAIJ 1901d382aafbSBarry Smith #endif 1902d382aafbSBarry Smith 1903d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MULTTRANSPOSEAIJ) 1904d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MULTTRANSPOSEAIJ 1905d382aafbSBarry Smith #endif 1906d382aafbSBarry Smith 1907d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_NORM) 1908d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_NORM 1909d382aafbSBarry Smith #endif 1910d382aafbSBarry Smith 1911d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MAXPY) 1912d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MAXPY 1913d382aafbSBarry Smith #endif 1914d382aafbSBarry Smith 1915d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_SOLVEAIJ) 1916d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_SOLVEAIJ 1917d382aafbSBarry Smith #endif 1918d382aafbSBarry Smith 1919d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_RELAXAIJ) 1920d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_RELAXAIJ 1921d382aafbSBarry Smith #endif 1922d382aafbSBarry Smith 1923d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_SOLVEBAIJ) 1924d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_SOLVEBAIJ 1925d382aafbSBarry Smith #endif 1926d382aafbSBarry Smith 1927d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MULTADDAIJ) 1928d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MULTADDAIJ 1929d382aafbSBarry Smith #endif 1930d382aafbSBarry Smith 1931d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MDOT) 1932d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MDOT 1933d382aafbSBarry Smith #endif 1934d382aafbSBarry Smith 1935d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_XTIMESY) 1936d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_XTIMESY 1937d382aafbSBarry Smith #endif 1938d382aafbSBarry Smith 1939d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_AYPX) 1940d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_AYPX 1941d382aafbSBarry Smith #endif 1942d382aafbSBarry Smith 1943d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_WAXPY) 1944d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_WAXPY 1945d382aafbSBarry Smith #endif 1946d382aafbSBarry Smith 1947d382aafbSBarry Smith #endif 1948d382aafbSBarry Smith 1949d382aafbSBarry Smith /* 1950d382aafbSBarry Smith Macros for indicating code that should be compiled with a C interface, 1951d382aafbSBarry Smith rather than a C++ interface. Any routines that are dynamically loaded 1952d382aafbSBarry Smith (such as the PCCreate_XXX() routines) must be wrapped so that the name 1953d382aafbSBarry Smith mangler does not change the functions symbol name. This just hides the 1954d382aafbSBarry Smith ugly extern "C" {} wrappers. 1955d382aafbSBarry Smith */ 1956d382aafbSBarry Smith #if defined(__cplusplus) 1957d382aafbSBarry Smith #define EXTERN_C_BEGIN extern "C" { 1958d382aafbSBarry Smith #define EXTERN_C_END } 1959d382aafbSBarry Smith #else 1960d382aafbSBarry Smith #define EXTERN_C_BEGIN 1961d382aafbSBarry Smith #define EXTERN_C_END 1962d382aafbSBarry Smith #endif 1963d382aafbSBarry Smith 1964d382aafbSBarry Smith /* --------------------------------------------------------------------*/ 1965d382aafbSBarry Smith 1966d382aafbSBarry Smith /*MC 1967d382aafbSBarry Smith MPI_Comm - the basic object used by MPI to determine which processes are involved in a 1968d382aafbSBarry Smith communication 1969d382aafbSBarry Smith 1970d382aafbSBarry Smith Level: beginner 1971d382aafbSBarry Smith 1972d382aafbSBarry Smith Note: This manual page is a place-holder because MPICH does not have a manual page for MPI_Comm 1973d382aafbSBarry Smith 1974d382aafbSBarry Smith .seealso: PETSC_COMM_WORLD, PETSC_COMM_SELF 1975d382aafbSBarry Smith M*/ 1976d382aafbSBarry Smith 1977d382aafbSBarry Smith /*MC 1978d382aafbSBarry Smith PetscScalar - PETSc type that represents either a double precision real number, a double precision 1979d382aafbSBarry Smith complex number, a single precision real number, a long double or an int - if the code is configured 1980d382aafbSBarry Smith with --with-scalar-type=real,complex --with-precision=single,double,longdouble,int,matsingle 1981d382aafbSBarry Smith 1982d382aafbSBarry Smith 1983d382aafbSBarry Smith Level: beginner 1984d382aafbSBarry Smith 1985d382aafbSBarry Smith .seealso: PetscReal, PassiveReal, PassiveScalar, MPIU_SCALAR, PetscInt 1986d382aafbSBarry Smith M*/ 1987d382aafbSBarry Smith 1988d382aafbSBarry Smith /*MC 1989d382aafbSBarry Smith PetscReal - PETSc type that represents a real number version of PetscScalar 1990d382aafbSBarry Smith 1991d382aafbSBarry Smith Level: beginner 1992d382aafbSBarry Smith 1993d382aafbSBarry Smith .seealso: PetscScalar, PassiveReal, PassiveScalar 1994d382aafbSBarry Smith M*/ 1995d382aafbSBarry Smith 1996d382aafbSBarry Smith /*MC 1997d382aafbSBarry Smith PassiveScalar - PETSc type that represents a PetscScalar 1998d382aafbSBarry Smith Level: beginner 1999d382aafbSBarry Smith 2000d382aafbSBarry Smith This is the same as a PetscScalar except in code that is automatically differentiated it is 2001d382aafbSBarry Smith treated as a constant (not an indendent or dependent variable) 2002d382aafbSBarry Smith 2003d382aafbSBarry Smith .seealso: PetscReal, PassiveReal, PetscScalar 2004d382aafbSBarry Smith M*/ 2005d382aafbSBarry Smith 2006d382aafbSBarry Smith /*MC 2007d382aafbSBarry Smith PassiveReal - PETSc type that represents a PetscReal 2008d382aafbSBarry Smith 2009d382aafbSBarry Smith Level: beginner 2010d382aafbSBarry Smith 2011d382aafbSBarry Smith This is the same as a PetscReal except in code that is automatically differentiated it is 2012d382aafbSBarry Smith treated as a constant (not an indendent or dependent variable) 2013d382aafbSBarry Smith 2014d382aafbSBarry Smith .seealso: PetscScalar, PetscReal, PassiveScalar 2015d382aafbSBarry Smith M*/ 2016d382aafbSBarry Smith 2017d382aafbSBarry Smith /*MC 2018d382aafbSBarry Smith MPIU_SCALAR - MPI datatype corresponding to PetscScalar 2019d382aafbSBarry Smith 2020d382aafbSBarry Smith Level: beginner 2021d382aafbSBarry Smith 2022d382aafbSBarry Smith Note: In MPI calls that require an MPI datatype that matches a PetscScalar or array of PetscScalars 2023d382aafbSBarry Smith pass this value 2024d382aafbSBarry Smith 2025d382aafbSBarry Smith .seealso: PetscReal, PassiveReal, PassiveScalar, PetscScalar, MPIU_INT 2026d382aafbSBarry Smith M*/ 2027d382aafbSBarry Smith 2028d382aafbSBarry Smith #if defined(PETSC_HAVE_MPIIO) 2029d382aafbSBarry Smith #if !defined(PETSC_WORDS_BIGENDIAN) 2030d382aafbSBarry Smith extern PetscErrorCode MPIU_File_write_all(MPI_File,void*,PetscMPIInt,MPI_Datatype,MPI_Status*); 2031d382aafbSBarry Smith extern PetscErrorCode MPIU_File_read_all(MPI_File,void*,PetscMPIInt,MPI_Datatype,MPI_Status*); 2032d382aafbSBarry Smith #else 2033d382aafbSBarry Smith #define MPIU_File_write_all(a,b,c,d,e) MPI_File_write_all(a,b,c,d,e) 2034d382aafbSBarry Smith #define MPIU_File_read_all(a,b,c,d,e) MPI_File_read_all(a,b,c,d,e) 2035d382aafbSBarry Smith #endif 2036d382aafbSBarry Smith #endif 2037d382aafbSBarry Smith 2038d382aafbSBarry Smith /* the following petsc_static_inline require petscerror.h */ 2039d382aafbSBarry Smith 2040d382aafbSBarry Smith /* Limit MPI to 32-bits */ 2041d382aafbSBarry Smith #define PETSC_MPI_INT_MAX 2147483647 2042d382aafbSBarry Smith #define PETSC_MPI_INT_MIN -2147483647 2043d382aafbSBarry Smith /* Limit BLAS to 32-bits */ 2044d382aafbSBarry Smith #define PETSC_BLAS_INT_MAX 2147483647 2045d382aafbSBarry Smith #define PETSC_BLAS_INT_MIN -2147483647 2046d382aafbSBarry Smith /* On 32 bit systems HDF5 is limited by size of integer, because hsize_t is defined as size_t */ 2047d382aafbSBarry Smith #define PETSC_HDF5_INT_MAX 2147483647 2048d382aafbSBarry Smith #define PETSC_HDF5_INT_MIN -2147483647 2049d382aafbSBarry Smith 2050d382aafbSBarry Smith #if defined(PETSC_USE_64BIT_INDICES) 2051e32f2f54SBarry Smith #define PetscMPIIntCheck(a) if ((a) > PETSC_MPI_INT_MAX) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Message too long for MPI") 2052e32f2f54SBarry Smith #define PetscBLASIntCheck(a) if ((a) > PETSC_BLAS_INT_MAX) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Array too long for BLAS/LAPACK") 2053eb10ad5fSJed Brown #define PetscMPIIntCast(a) (PetscMPIInt)(a);PetscMPIIntCheck(a) 2054eb10ad5fSJed Brown #define PetscBLASIntCast(a) (PetscBLASInt)(a);PetscBLASIntCheck(a) 2055d382aafbSBarry Smith 2056d382aafbSBarry Smith #if (PETSC_SIZEOF_SIZE_T == 4) 2057e32f2f54SBarry Smith #define PetscHDF5IntCheck(a) if ((a) > PETSC_HDF5_INT_MAX) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Array too long for HDF5") 2058eb10ad5fSJed Brown #define PetscHDF5IntCast(a) (hsize_t)(a);PetscHDF5IntCheck(a) 2059d382aafbSBarry Smith #else 2060d382aafbSBarry Smith #define PetscHDF5IntCheck(a) 2061d382aafbSBarry Smith #define PetscHDF5IntCast(a) a 2062d382aafbSBarry Smith #endif 2063d382aafbSBarry Smith 2064d382aafbSBarry Smith #else 2065d382aafbSBarry Smith #define PetscMPIIntCheck(a) 2066d382aafbSBarry Smith #define PetscBLASIntCheck(a) 2067d382aafbSBarry Smith #define PetscHDF5IntCheck(a) 2068d382aafbSBarry Smith #define PetscMPIIntCast(a) a 2069d382aafbSBarry Smith #define PetscBLASIntCast(a) a 2070d382aafbSBarry Smith #define PetscHDF5IntCast(a) a 2071d382aafbSBarry Smith #endif 2072d382aafbSBarry Smith 2073d382aafbSBarry Smith 2074d382aafbSBarry Smith /* 2075d382aafbSBarry Smith The IBM include files define hz, here we hide it so that it may be used 2076d382aafbSBarry Smith as a regular user variable. 2077d382aafbSBarry Smith */ 2078d382aafbSBarry Smith #if defined(hz) 2079d382aafbSBarry Smith #undef hz 2080d382aafbSBarry Smith #endif 2081d382aafbSBarry Smith 2082d382aafbSBarry Smith /* For arrays that contain filenames or paths */ 2083d382aafbSBarry Smith 2084d382aafbSBarry Smith 2085d382aafbSBarry Smith #if defined(PETSC_HAVE_LIMITS_H) 2086d382aafbSBarry Smith #include <limits.h> 2087d382aafbSBarry Smith #endif 2088d382aafbSBarry Smith #if defined(PETSC_HAVE_SYS_PARAM_H) 2089d382aafbSBarry Smith #include <sys/param.h> 2090d382aafbSBarry Smith #endif 2091d382aafbSBarry Smith #if defined(PETSC_HAVE_SYS_TYPES_H) 2092d382aafbSBarry Smith #include <sys/types.h> 2093d382aafbSBarry Smith #endif 2094d382aafbSBarry Smith #if defined(MAXPATHLEN) 2095d382aafbSBarry Smith # define PETSC_MAX_PATH_LEN MAXPATHLEN 2096d382aafbSBarry Smith #elif defined(MAX_PATH) 2097d382aafbSBarry Smith # define PETSC_MAX_PATH_LEN MAX_PATH 2098d382aafbSBarry Smith #elif defined(_MAX_PATH) 2099d382aafbSBarry Smith # define PETSC_MAX_PATH_LEN _MAX_PATH 2100d382aafbSBarry Smith #else 2101d382aafbSBarry Smith # define PETSC_MAX_PATH_LEN 4096 2102d382aafbSBarry Smith #endif 2103d382aafbSBarry Smith 2104d382aafbSBarry Smith /* Special support for C++ */ 2105d382aafbSBarry Smith #include "petscsys.hh" 21066c7e564aSBarry Smith 2107d382aafbSBarry Smith 2108d382aafbSBarry Smith /*MC 2109d382aafbSBarry Smith 2110d382aafbSBarry Smith UsingFortran - Fortran can be used with PETSc in four distinct approaches 2111d382aafbSBarry Smith 2112d382aafbSBarry Smith $ 1) classic Fortran 77 style 2113d1716517SSatish Balay $#include "finclude/petscXXX.h" to work with material from the XXX component of PETSc 2114d382aafbSBarry Smith $ XXX variablename 2115d382aafbSBarry Smith $ You cannot use this approach if you wish to use the Fortran 90 specific PETSc routines 2116d382aafbSBarry Smith $ which end in F90; such as VecGetArrayF90() 2117d382aafbSBarry Smith $ 2118d382aafbSBarry Smith $ 2) classic Fortran 90 style 2119d1716517SSatish Balay $#include "finclude/petscXXX.h" 2120d1716517SSatish Balay $#include "finclude/petscXXX.h90" to work with material from the XXX component of PETSc 2121d382aafbSBarry Smith $ XXX variablename 2122d382aafbSBarry Smith $ 2123d382aafbSBarry Smith $ 3) Using Fortran modules 2124d1716517SSatish Balay $#include "finclude/petscXXXdef.h" 2125d382aafbSBarry Smith $ use petscXXXX 2126d382aafbSBarry Smith $ XXX variablename 2127d382aafbSBarry Smith $ 2128d382aafbSBarry Smith $ 4) Use Fortran modules and Fortran data types for PETSc types 2129d1716517SSatish Balay $#include "finclude/petscXXXdef.h" 2130d382aafbSBarry Smith $ use petscXXXX 2131d382aafbSBarry Smith $ type(XXX) variablename 2132e2e64c6bSBarry Smith $ To use this approach you must ./configure PETSc with the additional 2133d382aafbSBarry Smith $ option --with-fortran-datatypes You cannot use the type(XXX) declaration approach without using Fortran modules 2134d382aafbSBarry Smith 2135d382aafbSBarry Smith Finally if you absolutely do not want to use any #include you can use either 2136d382aafbSBarry Smith 2137d382aafbSBarry Smith $ 3a) skip the #include BUT you cannot use any PETSc data type names like Vec, Mat, PetscInt, PetscErrorCode etc 2138d382aafbSBarry Smith $ and you must declare the variables as integer, for example 2139d382aafbSBarry Smith $ integer variablename 2140d382aafbSBarry Smith $ 2141d382aafbSBarry Smith $ 4a) skip the #include, you use the object types like type(Vec) type(Mat) but cannot use the data type 2142d382aafbSBarry Smith $ names like PetscErrorCode, PetscInt etc. again for those you must use integer 2143d382aafbSBarry Smith 2144d382aafbSBarry Smith We recommend either 2 or 3. Approaches 2 and 3 provide type checking for most PETSc function calls; 4 has type checking 2145d382aafbSBarry Smith for only a few PETSc functions. 2146d382aafbSBarry Smith 2147d382aafbSBarry Smith Fortran type checking with interfaces is strick, this means you cannot pass a scalar value when an array value 2148d382aafbSBarry Smith is expected (even though it is legal Fortran). For example when setting a single value in a matrix with MatSetValues() 2149d382aafbSBarry Smith you cannot have something like 2150d382aafbSBarry Smith $ PetscInt row,col 2151d382aafbSBarry Smith $ PetscScalar val 2152d382aafbSBarry Smith $ ... 2153d382aafbSBarry Smith $ call MatSetValues(mat,1,row,1,col,val,INSERT_VALUES,ierr) 2154d382aafbSBarry Smith You must instead have 2155d382aafbSBarry Smith $ PetscInt row(1),col(1) 2156d382aafbSBarry Smith $ PetscScalar val(1) 2157d382aafbSBarry Smith $ ... 2158d382aafbSBarry Smith $ call MatSetValues(mat,1,row,1,col,val,INSERT_VALUES,ierr) 2159d382aafbSBarry Smith 2160d382aafbSBarry Smith 2161d382aafbSBarry Smith See the example src/vec/vec/examples/tutorials/ex20f90.F90 for an example that can use all four approaches 2162d382aafbSBarry Smith 2163d382aafbSBarry Smith Developer Notes: The finclude/petscXXXdef.h contain all the #defines (would be typedefs in C code) these 2164d382aafbSBarry Smith automatically include their predecessors; for example finclude/petscvecdef.h includes finclude/petscisdef.h 2165d382aafbSBarry Smith 2166d382aafbSBarry Smith The finclude/petscXXXX.h contain all the parameter statements for that package. These automatically include 2167d382aafbSBarry Smith their finclude/petscXXXdef.h file but DO NOT automatically include their predecessors; for example 2168d382aafbSBarry Smith finclude/petscvec.h does NOT automatically include finclude/petscis.h 2169d382aafbSBarry Smith 2170d382aafbSBarry Smith The finclude/ftn-custom/petscXXXdef.h90 are not intended to be used directly in code, they define the 2171e2e64c6bSBarry Smith Fortran data type type(XXX) (for example type(Vec)) when PETSc is ./configure with the --with-fortran-datatypes option. 2172d382aafbSBarry Smith 2173d382aafbSBarry Smith The finclude/ftn-custom/petscXXX.h90 (not included directly by code) contain interface definitions for 2174d382aafbSBarry Smith the PETSc Fortran stubs that have different bindings then their C version (for example VecGetArrayF90). 2175d382aafbSBarry Smith 2176d382aafbSBarry Smith The finclude/ftn-auto/petscXXX.h90 (not included directly by code) contain interface definitions generated 2177d382aafbSBarry Smith automatically by "make allfortranstubs". 2178d382aafbSBarry Smith 2179e2e64c6bSBarry Smith The finclude/petscXXX.h90 includes the custom finclude/ftn-custom/petscXXX.h90 and if ./configure 2180d382aafbSBarry Smith was run with --with-fortran-interfaces it also includes the finclude/ftn-auto/petscXXX.h90 These DO NOT automatically 2181d382aafbSBarry Smith include their predecessors 2182d382aafbSBarry Smith 2183d382aafbSBarry Smith Level: beginner 2184d382aafbSBarry Smith 2185d382aafbSBarry Smith M*/ 2186d382aafbSBarry Smith 21877087cfbeSBarry Smith extern PetscErrorCode PetscGetArchType(char[],size_t); 21887087cfbeSBarry Smith extern PetscErrorCode PetscGetHostName(char[],size_t); 21897087cfbeSBarry Smith extern PetscErrorCode PetscGetUserName(char[],size_t); 21907087cfbeSBarry Smith extern PetscErrorCode PetscGetProgramName(char[],size_t); 21917087cfbeSBarry Smith extern PetscErrorCode PetscSetProgramName(const char[]); 21927087cfbeSBarry Smith extern PetscErrorCode PetscGetDate(char[],size_t); 2193d382aafbSBarry Smith 21947087cfbeSBarry Smith extern PetscErrorCode PetscSortInt(PetscInt,PetscInt[]); 21957087cfbeSBarry Smith extern PetscErrorCode PetscSortRemoveDupsInt(PetscInt*,PetscInt[]); 21967087cfbeSBarry Smith extern PetscErrorCode PetscSortIntWithPermutation(PetscInt,const PetscInt[],PetscInt[]); 21977087cfbeSBarry Smith extern PetscErrorCode PetscSortStrWithPermutation(PetscInt,const char*[],PetscInt[]); 21987087cfbeSBarry Smith extern PetscErrorCode PetscSortIntWithArray(PetscInt,PetscInt[],PetscInt[]); 21997087cfbeSBarry Smith extern PetscErrorCode PetscSortMPIIntWithArray(PetscMPIInt,PetscMPIInt[],PetscMPIInt[]); 22007087cfbeSBarry Smith extern PetscErrorCode PetscSortIntWithScalarArray(PetscInt,PetscInt[],PetscScalar[]); 22017087cfbeSBarry Smith extern PetscErrorCode PetscSortReal(PetscInt,PetscReal[]); 22027087cfbeSBarry Smith extern PetscErrorCode PetscSortRealWithPermutation(PetscInt,const PetscReal[],PetscInt[]); 22037087cfbeSBarry Smith extern PetscErrorCode PetscSortSplit(PetscInt,PetscInt,PetscScalar[],PetscInt[]); 22047087cfbeSBarry Smith extern PetscErrorCode PetscSortSplitReal(PetscInt,PetscInt,PetscReal[],PetscInt[]); 22057087cfbeSBarry Smith extern PetscErrorCode PetscProcessTree(PetscInt,const PetscBool [],const PetscInt[],PetscInt*,PetscInt**,PetscInt**,PetscInt**,PetscInt**); 2206d382aafbSBarry Smith 22077087cfbeSBarry Smith extern PetscErrorCode PetscSetDisplay(void); 22087087cfbeSBarry Smith extern PetscErrorCode PetscGetDisplay(char[],size_t); 2209d382aafbSBarry Smith 2210d382aafbSBarry Smith /*E 2211d382aafbSBarry Smith PetscRandomType - String with the name of a PETSc randomizer 2212d382aafbSBarry Smith with an optional dynamic library name, for example 2213d382aafbSBarry Smith http://www.mcs.anl.gov/petsc/lib.a:myrandcreate() 2214d382aafbSBarry Smith 2215d382aafbSBarry Smith Level: beginner 2216d382aafbSBarry Smith 2217e2e64c6bSBarry Smith Notes: to use the SPRNG you must have ./configure PETSc 2218d382aafbSBarry Smith with the option --download-sprng 2219d382aafbSBarry Smith 2220d382aafbSBarry Smith .seealso: PetscRandomSetType(), PetscRandom 2221d382aafbSBarry Smith E*/ 2222d382aafbSBarry Smith #define PetscRandomType char* 2223d382aafbSBarry Smith #define PETSCRAND "rand" 2224d382aafbSBarry Smith #define PETSCRAND48 "rand48" 2225d382aafbSBarry Smith #define PETSCSPRNG "sprng" 2226d382aafbSBarry Smith 2227d382aafbSBarry Smith /* Logging support */ 22287087cfbeSBarry Smith extern PetscClassId PETSC_RANDOM_CLASSID; 2229d382aafbSBarry Smith 22307087cfbeSBarry Smith extern PetscErrorCode PetscRandomInitializePackage(const char[]); 2231d382aafbSBarry Smith 2232d382aafbSBarry Smith /*S 2233d382aafbSBarry Smith PetscRandom - Abstract PETSc object that manages generating random numbers 2234d382aafbSBarry Smith 2235d382aafbSBarry Smith Level: intermediate 2236d382aafbSBarry Smith 2237d382aafbSBarry Smith Concepts: random numbers 2238d382aafbSBarry Smith 2239d382aafbSBarry Smith .seealso: PetscRandomCreate(), PetscRandomGetValue(), PetscRandomType 2240d382aafbSBarry Smith S*/ 2241d382aafbSBarry Smith typedef struct _p_PetscRandom* PetscRandom; 2242d382aafbSBarry Smith 2243d382aafbSBarry Smith /* Dynamic creation and loading functions */ 2244d382aafbSBarry Smith extern PetscFList PetscRandomList; 2245ace3abfcSBarry Smith extern PetscBool PetscRandomRegisterAllCalled; 2246d382aafbSBarry Smith 22477087cfbeSBarry Smith extern PetscErrorCode PetscRandomRegisterAll(const char []); 22487087cfbeSBarry Smith extern PetscErrorCode PetscRandomRegister(const char[],const char[],const char[],PetscErrorCode (*)(PetscRandom)); 22497087cfbeSBarry Smith extern PetscErrorCode PetscRandomRegisterDestroy(void); 22507087cfbeSBarry Smith extern PetscErrorCode PetscRandomSetType(PetscRandom, const PetscRandomType); 22517087cfbeSBarry Smith extern PetscErrorCode PetscRandomSetFromOptions(PetscRandom); 22527087cfbeSBarry Smith extern PetscErrorCode PetscRandomGetType(PetscRandom, const PetscRandomType*); 22537087cfbeSBarry Smith extern PetscErrorCode PetscRandomViewFromOptions(PetscRandom,char*); 22547087cfbeSBarry Smith extern PetscErrorCode PetscRandomView(PetscRandom,PetscViewer); 2255d382aafbSBarry Smith 2256d382aafbSBarry Smith /*MC 2257d382aafbSBarry Smith PetscRandomRegisterDynamic - Adds a new PetscRandom component implementation 2258d382aafbSBarry Smith 2259d382aafbSBarry Smith Synopsis: 22601890ba74SBarry Smith PetscErrorCode PetscRandomRegisterDynamic(const char *name, const char *path, const char *func_name, PetscErrorCode (*create_func)(PetscRandom)) 2261d382aafbSBarry Smith 2262d382aafbSBarry Smith Not Collective 2263d382aafbSBarry Smith 2264d382aafbSBarry Smith Input Parameters: 2265d382aafbSBarry Smith + name - The name of a new user-defined creation routine 2266d382aafbSBarry Smith . path - The path (either absolute or relative) of the library containing this routine 2267d382aafbSBarry Smith . func_name - The name of routine to create method context 2268d382aafbSBarry Smith - create_func - The creation routine itself 2269d382aafbSBarry Smith 2270d382aafbSBarry Smith Notes: 2271d382aafbSBarry Smith PetscRandomRegisterDynamic() may be called multiple times to add several user-defined randome number generators 2272d382aafbSBarry Smith 2273d382aafbSBarry Smith If dynamic libraries are used, then the fourth input argument (routine_create) is ignored. 2274d382aafbSBarry Smith 2275d382aafbSBarry Smith Sample usage: 2276d382aafbSBarry Smith .vb 2277d382aafbSBarry Smith PetscRandomRegisterDynamic("my_rand","/home/username/my_lib/lib/libO/solaris/libmy.a", "MyPetscRandomtorCreate", MyPetscRandomtorCreate); 2278d382aafbSBarry Smith .ve 2279d382aafbSBarry Smith 2280d382aafbSBarry Smith Then, your random type can be chosen with the procedural interface via 2281d382aafbSBarry Smith .vb 2282d382aafbSBarry Smith PetscRandomCreate(MPI_Comm, PetscRandom *); 2283d382aafbSBarry Smith PetscRandomSetType(PetscRandom,"my_random_name"); 2284d382aafbSBarry Smith .ve 2285d382aafbSBarry Smith or at runtime via the option 2286d382aafbSBarry Smith .vb 2287d382aafbSBarry Smith -random_type my_random_name 2288d382aafbSBarry Smith .ve 2289d382aafbSBarry Smith 2290d382aafbSBarry Smith Notes: $PETSC_ARCH occuring in pathname will be replaced with appropriate values. 2291d382aafbSBarry Smith 2292d382aafbSBarry Smith For an example of the code needed to interface your own random number generator see 2293d382aafbSBarry Smith src/sys/random/impls/rand/rand.c 2294d382aafbSBarry Smith 2295d382aafbSBarry Smith Level: advanced 2296d382aafbSBarry Smith 2297d382aafbSBarry Smith .keywords: PetscRandom, register 2298d382aafbSBarry Smith .seealso: PetscRandomRegisterAll(), PetscRandomRegisterDestroy(), PetscRandomRegister() 2299d382aafbSBarry Smith M*/ 2300d382aafbSBarry Smith #if defined(PETSC_USE_DYNAMIC_LIBRARIES) 2301d382aafbSBarry Smith #define PetscRandomRegisterDynamic(a,b,c,d) PetscRandomRegister(a,b,c,0) 2302d382aafbSBarry Smith #else 2303d382aafbSBarry Smith #define PetscRandomRegisterDynamic(a,b,c,d) PetscRandomRegister(a,b,c,d) 2304d382aafbSBarry Smith #endif 2305d382aafbSBarry Smith 23067087cfbeSBarry Smith extern PetscErrorCode PetscRandomCreate(MPI_Comm,PetscRandom*); 23077087cfbeSBarry Smith extern PetscErrorCode PetscRandomGetValue(PetscRandom,PetscScalar*); 23087087cfbeSBarry Smith extern PetscErrorCode PetscRandomGetValueReal(PetscRandom,PetscReal*); 23097087cfbeSBarry Smith extern PetscErrorCode PetscRandomGetInterval(PetscRandom,PetscScalar*,PetscScalar*); 23107087cfbeSBarry Smith extern PetscErrorCode PetscRandomSetInterval(PetscRandom,PetscScalar,PetscScalar); 23117087cfbeSBarry Smith extern PetscErrorCode PetscRandomSetSeed(PetscRandom,unsigned long); 23127087cfbeSBarry Smith extern PetscErrorCode PetscRandomGetSeed(PetscRandom,unsigned long *); 23137087cfbeSBarry Smith extern PetscErrorCode PetscRandomSeed(PetscRandom); 2314fcfd50ebSBarry Smith extern PetscErrorCode PetscRandomDestroy(PetscRandom*); 2315d382aafbSBarry Smith 23167087cfbeSBarry Smith extern PetscErrorCode PetscGetFullPath(const char[],char[],size_t); 23177087cfbeSBarry Smith extern PetscErrorCode PetscGetRelativePath(const char[],char[],size_t); 23187087cfbeSBarry Smith extern PetscErrorCode PetscGetWorkingDirectory(char[],size_t); 23197087cfbeSBarry Smith extern PetscErrorCode PetscGetRealPath(const char[],char[]); 23207087cfbeSBarry Smith extern PetscErrorCode PetscGetHomeDirectory(char[],size_t); 23217087cfbeSBarry Smith extern PetscErrorCode PetscTestFile(const char[],char,PetscBool *); 23227087cfbeSBarry Smith extern PetscErrorCode PetscTestDirectory(const char[],char,PetscBool *); 2323d382aafbSBarry Smith 23247087cfbeSBarry Smith extern PetscErrorCode PetscBinaryRead(int,void*,PetscInt,PetscDataType); 23257087cfbeSBarry Smith extern PetscErrorCode PetscBinarySynchronizedRead(MPI_Comm,int,void*,PetscInt,PetscDataType); 23267087cfbeSBarry Smith extern PetscErrorCode PetscBinarySynchronizedWrite(MPI_Comm,int,void*,PetscInt,PetscDataType,PetscBool ); 23277087cfbeSBarry Smith extern PetscErrorCode PetscBinaryWrite(int,void*,PetscInt,PetscDataType,PetscBool ); 23287087cfbeSBarry Smith extern PetscErrorCode PetscBinaryOpen(const char[],PetscFileMode,int *); 23297087cfbeSBarry Smith extern PetscErrorCode PetscBinaryClose(int); 23307087cfbeSBarry Smith extern PetscErrorCode PetscSharedTmp(MPI_Comm,PetscBool *); 23317087cfbeSBarry Smith extern PetscErrorCode PetscSharedWorkingDirectory(MPI_Comm,PetscBool *); 23327087cfbeSBarry Smith extern PetscErrorCode PetscGetTmp(MPI_Comm,char[],size_t); 23337087cfbeSBarry Smith extern PetscErrorCode PetscFileRetrieve(MPI_Comm,const char[],char[],size_t,PetscBool *); 23347087cfbeSBarry Smith extern PetscErrorCode PetscLs(MPI_Comm,const char[],char[],size_t,PetscBool *); 23357087cfbeSBarry Smith extern PetscErrorCode PetscOpenSocket(char*,int,int*); 23367087cfbeSBarry Smith extern PetscErrorCode PetscWebServe(MPI_Comm,int); 2337d382aafbSBarry Smith 2338d382aafbSBarry Smith /* 2339d382aafbSBarry Smith In binary files variables are stored using the following lengths, 2340d382aafbSBarry Smith regardless of how they are stored in memory on any one particular 2341d382aafbSBarry Smith machine. Use these rather then sizeof() in computing sizes for 2342d382aafbSBarry Smith PetscBinarySeek(). 2343d382aafbSBarry Smith */ 2344d382aafbSBarry Smith #define PETSC_BINARY_INT_SIZE (32/8) 2345d382aafbSBarry Smith #define PETSC_BINARY_FLOAT_SIZE (32/8) 2346d382aafbSBarry Smith #define PETSC_BINARY_CHAR_SIZE (8/8) 2347d382aafbSBarry Smith #define PETSC_BINARY_SHORT_SIZE (16/8) 2348d382aafbSBarry Smith #define PETSC_BINARY_DOUBLE_SIZE (64/8) 2349d382aafbSBarry Smith #define PETSC_BINARY_SCALAR_SIZE sizeof(PetscScalar) 2350d382aafbSBarry Smith 2351d382aafbSBarry Smith /*E 2352d382aafbSBarry Smith PetscBinarySeekType - argument to PetscBinarySeek() 2353d382aafbSBarry Smith 2354d382aafbSBarry Smith Level: advanced 2355d382aafbSBarry Smith 2356d382aafbSBarry Smith .seealso: PetscBinarySeek(), PetscBinarySynchronizedSeek() 2357d382aafbSBarry Smith E*/ 2358d382aafbSBarry Smith typedef enum {PETSC_BINARY_SEEK_SET = 0,PETSC_BINARY_SEEK_CUR = 1,PETSC_BINARY_SEEK_END = 2} PetscBinarySeekType; 23597087cfbeSBarry Smith extern PetscErrorCode PetscBinarySeek(int,off_t,PetscBinarySeekType,off_t*); 23607087cfbeSBarry Smith extern PetscErrorCode PetscBinarySynchronizedSeek(MPI_Comm,int,off_t,PetscBinarySeekType,off_t*); 2361d382aafbSBarry Smith 23627087cfbeSBarry Smith extern PetscErrorCode PetscSetDebugTerminal(const char[]); 23637087cfbeSBarry Smith extern PetscErrorCode PetscSetDebugger(const char[],PetscBool ); 23647087cfbeSBarry Smith extern PetscErrorCode PetscSetDefaultDebugger(void); 23657087cfbeSBarry Smith extern PetscErrorCode PetscSetDebuggerFromString(char*); 23667087cfbeSBarry Smith extern PetscErrorCode PetscAttachDebugger(void); 23677087cfbeSBarry Smith extern PetscErrorCode PetscStopForDebugger(void); 2368d382aafbSBarry Smith 23697087cfbeSBarry Smith extern PetscErrorCode PetscGatherNumberOfMessages(MPI_Comm,const PetscMPIInt[],const PetscMPIInt[],PetscMPIInt*); 23707087cfbeSBarry Smith extern PetscErrorCode PetscGatherMessageLengths(MPI_Comm,PetscMPIInt,PetscMPIInt,const PetscMPIInt[],PetscMPIInt**,PetscMPIInt**); 23717087cfbeSBarry Smith extern PetscErrorCode PetscGatherMessageLengths2(MPI_Comm,PetscMPIInt,PetscMPIInt,const PetscMPIInt[],const PetscMPIInt[],PetscMPIInt**,PetscMPIInt**,PetscMPIInt**); 23727087cfbeSBarry Smith extern PetscErrorCode PetscPostIrecvInt(MPI_Comm,PetscMPIInt,PetscMPIInt,const PetscMPIInt[],const PetscMPIInt[],PetscInt***,MPI_Request**); 23737087cfbeSBarry Smith extern PetscErrorCode PetscPostIrecvScalar(MPI_Comm,PetscMPIInt,PetscMPIInt,const PetscMPIInt[],const PetscMPIInt[],PetscScalar***,MPI_Request**); 2374d382aafbSBarry Smith 23757087cfbeSBarry Smith extern PetscErrorCode PetscSSEIsEnabled(MPI_Comm,PetscBool *,PetscBool *); 2376d382aafbSBarry Smith 2377d382aafbSBarry Smith /*E 2378d382aafbSBarry Smith InsertMode - Whether entries are inserted or added into vectors or matrices 2379d382aafbSBarry Smith 2380d382aafbSBarry Smith Level: beginner 2381d382aafbSBarry Smith 2382d382aafbSBarry Smith .seealso: VecSetValues(), MatSetValues(), VecSetValue(), VecSetValuesBlocked(), 2383d382aafbSBarry Smith VecSetValuesLocal(), VecSetValuesBlockedLocal(), MatSetValuesBlocked(), 2384d382aafbSBarry Smith MatSetValuesBlockedLocal(), MatSetValuesLocal(), VecScatterBegin(), VecScatterEnd() 2385d382aafbSBarry Smith E*/ 238611f088b5SMatthew G Knepley typedef enum {NOT_SET_VALUES, INSERT_VALUES, ADD_VALUES, MAX_VALUES, INSERT_ALL_VALUES, ADD_ALL_VALUES} InsertMode; 2387d382aafbSBarry Smith 2388d382aafbSBarry Smith /*MC 2389d382aafbSBarry Smith INSERT_VALUES - Put a value into a vector or matrix, overwrites any previous value 2390d382aafbSBarry Smith 2391d382aafbSBarry Smith Level: beginner 2392d382aafbSBarry Smith 2393d382aafbSBarry Smith .seealso: InsertMode, VecSetValues(), MatSetValues(), VecSetValue(), VecSetValuesBlocked(), 2394eca87e8dSBarry Smith VecSetValuesLocal(), VecSetValuesBlockedLocal(), MatSetValuesBlocked(), ADD_VALUES, 2395eca87e8dSBarry Smith MatSetValuesBlockedLocal(), MatSetValuesLocal(), VecScatterBegin(), VecScatterEnd(), MAX_VALUES 2396d382aafbSBarry Smith 2397d382aafbSBarry Smith M*/ 2398d382aafbSBarry Smith 2399d382aafbSBarry Smith /*MC 2400d382aafbSBarry Smith ADD_VALUES - Adds a value into a vector or matrix, if there previously was no value, just puts the 2401d382aafbSBarry Smith value into that location 2402d382aafbSBarry Smith 2403d382aafbSBarry Smith Level: beginner 2404d382aafbSBarry Smith 2405d382aafbSBarry Smith .seealso: InsertMode, VecSetValues(), MatSetValues(), VecSetValue(), VecSetValuesBlocked(), 2406eca87e8dSBarry Smith VecSetValuesLocal(), VecSetValuesBlockedLocal(), MatSetValuesBlocked(), INSERT_VALUES, 2407eca87e8dSBarry Smith MatSetValuesBlockedLocal(), MatSetValuesLocal(), VecScatterBegin(), VecScatterEnd(), MAX_VALUES 2408d382aafbSBarry Smith 2409d382aafbSBarry Smith M*/ 2410d382aafbSBarry Smith 2411d382aafbSBarry Smith /*MC 2412d382aafbSBarry Smith MAX_VALUES - Puts the maximum of the scattered/gathered value and the current value into each location 2413d382aafbSBarry Smith 2414d382aafbSBarry Smith Level: beginner 2415d382aafbSBarry Smith 2416d382aafbSBarry Smith .seealso: InsertMode, VecScatterBegin(), VecScatterEnd(), ADD_VALUES, INSERT_VALUES 2417d382aafbSBarry Smith 2418d382aafbSBarry Smith M*/ 2419d382aafbSBarry Smith 2420d382aafbSBarry Smith /*S 2421d382aafbSBarry Smith PetscSubcomm - Context of MPI subcommunicators, used by PCREDUNDANT 2422d382aafbSBarry Smith 2423d382aafbSBarry Smith Level: advanced 2424d382aafbSBarry Smith 2425d382aafbSBarry Smith Concepts: communicator, create 2426d382aafbSBarry Smith S*/ 2427d382aafbSBarry Smith typedef struct _n_PetscSubcomm* PetscSubcomm; 2428d382aafbSBarry Smith 2429d382aafbSBarry Smith struct _n_PetscSubcomm { 2430d382aafbSBarry Smith MPI_Comm parent; /* parent communicator */ 2431d382aafbSBarry Smith MPI_Comm dupparent; /* duplicate parent communicator, under which the processors of this subcomm have contiguous rank */ 2432d382aafbSBarry Smith MPI_Comm comm; /* this communicator */ 2433d382aafbSBarry Smith PetscInt n; /* num of subcommunicators under the parent communicator */ 2434d382aafbSBarry Smith PetscInt color; /* color of processors belong to this communicator */ 2435d382aafbSBarry Smith }; 2436d382aafbSBarry Smith 2437638faf0bSHong Zhang typedef enum {PETSC_SUBCOMM_GENERAL=0,PETSC_SUBCOMM_CONTIGUOUS=1,PETSC_SUBCOMM_INTERLACED=2} PetscSubcommType; 2438638faf0bSHong Zhang extern const char *PetscSubcommTypes[]; 2439638faf0bSHong Zhang 24407087cfbeSBarry Smith extern PetscErrorCode PetscSubcommCreate(MPI_Comm,PetscSubcomm*); 2441fcfd50ebSBarry Smith extern PetscErrorCode PetscSubcommDestroy(PetscSubcomm*); 24427087cfbeSBarry Smith extern PetscErrorCode PetscSubcommSetNumber(PetscSubcomm,PetscInt); 24437087cfbeSBarry Smith extern PetscErrorCode PetscSubcommSetType(PetscSubcomm,const PetscSubcommType); 24447087cfbeSBarry Smith extern PetscErrorCode PetscSubcommSetTypeGeneral(PetscSubcomm,PetscMPIInt,PetscMPIInt,PetscMPIInt); 2445d382aafbSBarry Smith 2446d382aafbSBarry Smith PETSC_EXTERN_CXX_END 24476c7e564aSBarry Smith 24489e03d832SJed Brown /* Reset __FUNCT__ in case the user does not define it themselves */ 24499e03d832SJed Brown #undef __FUNCT__ 24509e03d832SJed Brown #define __FUNCT__ "User provided function" 24519e03d832SJed Brown 2452d382aafbSBarry Smith #endif 2453