1 /* 2 This is the main PETSc include file (for C and C++). It is included by all 3 other PETSc include files, so it almost never has to be specifically included. 4 */ 5 #if !defined(__PETSCSYS_H) 6 #define __PETSCSYS_H 7 /* ========================================================================== */ 8 /* 9 petscconf.h is contained in ${PETSC_ARCH}/include/petscconf.h it is 10 found automatically by the compiler due to the -I${PETSC_DIR}/${PETSC_ARCH}/include. 11 For --prefix installs the ${PETSC_ARCH}/ does not exist and petscconf.h is in the same 12 directory as the other PETSc include files. 13 */ 14 #include <petscconf.h> 15 #include <petscfix.h> 16 17 #if defined(PETSC_DESIRE_FEATURE_TEST_MACROS) 18 /* 19 Feature test macros must be included before headers defined by IEEE Std 1003.1-2001 20 We only turn these in PETSc source files that require them by setting PETSC_DESIRE_FEATURE_TEST_MACROS 21 */ 22 #if defined(PETSC__POSIX_C_SOURCE_200112L) && !defined(_POSIX_C_SOURCE) 23 #define _POSIX_C_SOURCE 200112L 24 #endif 25 #if defined(PETSC__BSD_SOURCE) && !defined(_BSD_SOURCE) 26 #define _BSD_SOURCE 27 #endif 28 #if defined(PETSC__DEFAULT_SOURCE) && !defined(_DEFAULT_SOURCE) 29 #define _DEFAULT_SOURCE 30 #endif 31 #if defined(PETSC__GNU_SOURCE) && !defined(_GNU_SOURCE) 32 #define _GNU_SOURCE 33 #endif 34 #endif 35 36 /* ========================================================================== */ 37 /* 38 This facilitates using the C version of PETSc from C++ and the C++ version from C. 39 */ 40 #if defined(__cplusplus) 41 # define PETSC_FUNCTION_NAME PETSC_FUNCTION_NAME_CXX 42 #else 43 # define PETSC_FUNCTION_NAME PETSC_FUNCTION_NAME_C 44 #endif 45 46 /* ========================================================================== */ 47 /* 48 Since PETSc manages its own extern "C" handling users should never include PETSc include 49 files within extern "C". This will generate a compiler error if a user does put the include 50 file within an extern "C". 51 */ 52 #if defined(__cplusplus) 53 void assert_never_put_petsc_headers_inside_an_extern_c(int); void assert_never_put_petsc_headers_inside_an_extern_c(double); 54 #endif 55 56 #if defined(__cplusplus) 57 # define PETSC_RESTRICT PETSC_CXX_RESTRICT 58 #else 59 # define PETSC_RESTRICT PETSC_C_RESTRICT 60 #endif 61 62 #if defined(__cplusplus) 63 # define PETSC_STATIC_INLINE PETSC_CXX_STATIC_INLINE 64 #else 65 # define PETSC_STATIC_INLINE PETSC_C_STATIC_INLINE 66 #endif 67 68 #if defined(_WIN32) && defined(PETSC_USE_SHARED_LIBRARIES) /* For Win32 shared libraries */ 69 # define PETSC_DLLEXPORT __declspec(dllexport) 70 # define PETSC_DLLIMPORT __declspec(dllimport) 71 # define PETSC_VISIBILITY_INTERNAL 72 #elif defined(PETSC_USE_VISIBILITY_CXX) && defined(__cplusplus) 73 # define PETSC_DLLEXPORT __attribute__((visibility ("default"))) 74 # define PETSC_DLLIMPORT __attribute__((visibility ("default"))) 75 # define PETSC_VISIBILITY_INTERNAL __attribute__((visibility ("hidden"))) 76 #elif defined(PETSC_USE_VISIBILITY_C) && !defined(__cplusplus) 77 # define PETSC_DLLEXPORT __attribute__((visibility ("default"))) 78 # define PETSC_DLLIMPORT __attribute__((visibility ("default"))) 79 # define PETSC_VISIBILITY_INTERNAL __attribute__((visibility ("hidden"))) 80 #else 81 # define PETSC_DLLEXPORT 82 # define PETSC_DLLIMPORT 83 # define PETSC_VISIBILITY_INTERNAL 84 #endif 85 86 #if defined(petsc_EXPORTS) /* CMake defines this when building the shared library */ 87 # define PETSC_VISIBILITY_PUBLIC PETSC_DLLEXPORT 88 #else /* Win32 users need this to import symbols from petsc.dll */ 89 # define PETSC_VISIBILITY_PUBLIC PETSC_DLLIMPORT 90 #endif 91 92 /* 93 Functions tagged with PETSC_EXTERN in the header files are 94 always defined as extern "C" when compiled with C++ so they may be 95 used from C and are always visible in the shared libraries 96 */ 97 #if defined(__cplusplus) 98 #define PETSC_EXTERN extern "C" PETSC_VISIBILITY_PUBLIC 99 #define PETSC_EXTERN_TYPEDEF extern "C" 100 #define PETSC_INTERN extern "C" PETSC_VISIBILITY_INTERNAL 101 #else 102 #define PETSC_EXTERN extern PETSC_VISIBILITY_PUBLIC 103 #define PETSC_EXTERN_TYPEDEF 104 #define PETSC_INTERN extern PETSC_VISIBILITY_INTERNAL 105 #endif 106 107 #include <petscversion.h> 108 #define PETSC_AUTHOR_INFO " The PETSc Team\n petsc-maint@mcs.anl.gov\n http://www.mcs.anl.gov/petsc/\n" 109 110 /* ========================================================================== */ 111 112 /* 113 Defines the interface to MPI allowing the use of all MPI functions. 114 115 PETSc does not use the C++ binding of MPI at ALL. The following flag 116 makes sure the C++ bindings are not included. The C++ bindings REQUIRE 117 putting mpi.h before ANY C++ include files, we cannot control this 118 with all PETSc users. Users who want to use the MPI C++ bindings can include 119 mpicxx.h directly in their code 120 */ 121 #if !defined(MPICH_SKIP_MPICXX) 122 # define MPICH_SKIP_MPICXX 1 123 #endif 124 #if !defined(OMPI_SKIP_MPICXX) 125 # define OMPI_SKIP_MPICXX 1 126 #endif 127 #include <mpi.h> 128 129 /* 130 Perform various sanity checks that the correct mpi.h is being included at compile time. 131 This usually happens because 132 * either an unexpected mpi.h is in the default compiler path (i.e. in /usr/include) or 133 * an extra include path -I/something (which contains the unexpected mpi.h) is being passed to the compiler 134 */ 135 #if defined(PETSC_HAVE_MPIUNI) 136 # if !defined(__MPIUNI_H) 137 # error "PETSc was configured with --with-mpi=0 but now appears to be compiling using a different mpi.h" 138 # endif 139 #elif defined(PETSC_HAVE_I_MPI_NUMVERSION) 140 # if !defined(I_MPI_NUMVERSION) 141 # error "PETSc was configured with I_MPI but now appears to be compiling using a non-I_MPI mpi.h" 142 # elif I_MPI_NUMVERSION != PETSC_HAVE_I_MPI_NUMVERSION 143 # error "PETSc was configured with one I_MPI mpi.h version but now appears to be compiling using a different I_MPI mpi.h version" 144 # endif 145 #elif defined(PETSC_HAVE_MVAPICH2_NUMVERSION) 146 # if !defined(MVAPICH2_NUMVERSION) 147 # error "PETSc was configured with MVAPICH2 but now appears to be compiling using a non-MVAPICH2 mpi.h" 148 # elif MVAPICH2_NUMVERSION != PETSC_HAVE_MVAPICH2_NUMVERSION 149 # error "PETSc was configured with one MVAPICH2 mpi.h version but now appears to be compiling using a different MVAPICH2 mpi.h version" 150 # endif 151 #elif defined(PETSC_HAVE_MPICH_NUMVERSION) 152 # if !defined(MPICH_NUMVERSION) || defined(MVAPICH2_NUMVERSION) || defined(I_MPI_NUMVERSION) 153 # error "PETSc was configured with MPICH but now appears to be compiling using a non-MPICH mpi.h" 154 # elif (MPICH_NUMVERSION/100000 != PETSC_HAVE_MPICH_NUMVERSION/100000) || (MPICH_NUMVERSION%100000/1000 < PETSC_HAVE_MPICH_NUMVERSION%100000/1000) 155 # error "PETSc was configured with one MPICH mpi.h version but now appears to be compiling using a different MPICH mpi.h version" 156 # endif 157 #elif defined(PETSC_HAVE_OMPI_MAJOR_VERSION) 158 # if !defined(OMPI_MAJOR_VERSION) 159 # error "PETSc was configured with OpenMPI but now appears to be compiling using a non-OpenMPI mpi.h" 160 # elif (OMPI_MAJOR_VERSION != PETSC_HAVE_OMPI_MAJOR_VERSION) || (OMPI_MINOR_VERSION != PETSC_HAVE_OMPI_MINOR_VERSION) || (OMPI_RELEASE_VERSION < PETSC_HAVE_OMPI_RELEASE_VERSION) 161 # error "PETSc was configured with one OpenMPI mpi.h version but now appears to be compiling using a different OpenMPI mpi.h version" 162 # endif 163 #elif defined(OMPI_MAJOR_VERSION) || defined(MPICH_NUMVERSION) 164 # error "PETSc was configured with undetermined MPI - but now appears to be compiling using either of OpenMPI or a MPICH variant" 165 #endif 166 167 /* 168 Need to put stdio.h AFTER mpi.h for MPICH2 with C++ compiler 169 see the top of mpicxx.h in the MPICH2 distribution. 170 */ 171 #include <stdio.h> 172 173 /* MSMPI on 32bit windows requires this yukky hack - that breaks MPI standard compliance */ 174 #if !defined(MPIAPI) 175 #define MPIAPI 176 #endif 177 178 /* 179 Support for Clang (>=3.2) matching type tag arguments with void* buffer types. 180 This allows the compiler to detect cases where the MPI datatype argument passed to a MPI routine 181 does not match the actual type of the argument being passed in 182 */ 183 #if defined(__has_attribute) && defined(works_with_const_which_is_not_true) 184 # if __has_attribute(argument_with_type_tag) && __has_attribute(pointer_with_type_tag) && __has_attribute(type_tag_for_datatype) 185 # define PetscAttrMPIPointerWithType(bufno,typeno) __attribute__((pointer_with_type_tag(MPI,bufno,typeno))) 186 # define PetscAttrMPITypeTag(type) __attribute__((type_tag_for_datatype(MPI,type))) 187 # define PetscAttrMPITypeTagLayoutCompatible(type) __attribute__((type_tag_for_datatype(MPI,type,layout_compatible))) 188 # endif 189 #endif 190 #if !defined(PetscAttrMPIPointerWithType) 191 # define PetscAttrMPIPointerWithType(bufno,typeno) 192 # define PetscAttrMPITypeTag(type) 193 # define PetscAttrMPITypeTagLayoutCompatible(type) 194 #endif 195 196 /*MC 197 PetscErrorCode - datatype used for return error code from almost all PETSc functions 198 199 Level: beginner 200 201 .seealso: CHKERRQ, SETERRQ 202 M*/ 203 typedef int PetscErrorCode; 204 205 /*MC 206 207 PetscClassId - A unique id used to identify each PETSc class. 208 209 Notes: 210 Use PetscClassIdRegister() to obtain a new value for a new class being created. Usually 211 XXXInitializePackage() calls it for each class it defines. 212 213 Developer Notes: 214 Internal integer stored in the _p_PetscObject data structure. 215 These are all computed by an offset from the lowest one, PETSC_SMALLEST_CLASSID. 216 217 Level: developer 218 219 .seealso: PetscClassIdRegister(), PetscLogEventRegister(), PetscHeaderCreate() 220 M*/ 221 typedef int PetscClassId; 222 223 224 /*MC 225 PetscMPIInt - datatype used to represent 'int' parameters to MPI functions. 226 227 Level: intermediate 228 229 Notes: 230 usually this is the same as PetscInt, but if PETSc was built with --with-64-bit-indices but 231 standard C/Fortran integers are 32 bit then this is NOT the same as PetscInt; it remains 32 bit. 232 233 PetscMPIIntCast(a,&b) checks if the given PetscInt a will fit in a PetscMPIInt, if not it 234 generates a PETSC_ERR_ARG_OUTOFRANGE error. 235 236 .seealso: PetscBLASInt, PetscInt, PetscMPIIntCast() 237 238 M*/ 239 typedef int PetscMPIInt; 240 241 /*MC 242 PetscEnum - datatype used to pass enum types within PETSc functions. 243 244 Level: intermediate 245 246 .seealso: PetscOptionsGetEnum(), PetscOptionsEnum(), PetscBagRegisterEnum() 247 M*/ 248 typedef enum { ENUM_DUMMY } PetscEnum; 249 PETSC_EXTERN MPI_Datatype MPIU_ENUM PetscAttrMPITypeTag(PetscEnum); 250 251 #if defined(PETSC_HAVE_STDINT_H) 252 #include <stdint.h> 253 #endif 254 #if defined (PETSC_HAVE_INTTYPES_H) 255 #define __STDC_FORMAT_MACROS /* required for using PRId64 from c++ */ 256 #include <inttypes.h> 257 # if !defined(PRId64) 258 # define PRId64 "ld" 259 # endif 260 #endif 261 262 typedef short PetscShort; 263 typedef char PetscChar; 264 typedef float PetscFloat; 265 266 /*MC 267 PetscInt - PETSc type that represents an integer, used primarily to 268 represent size of arrays and indexing into arrays. Its size can be configured with the option --with-64-bit-indices to be either 32-bit (default) or 64-bit. 269 270 Notes: 271 For MPI calls that require datatypes, use MPIU_INT as the datatype for PetscInt. It will automatically work correctly regardless of the size of PetscInt. 272 273 Level: beginner 274 275 .seealso: PetscBLASInt, PetscMPIInt, PetscReal, PetscScalar, PetscComplex, PetscInt, MPIU_REAL, MPIU_SCALAR, MPIU_COMPLEX, MPIU_INT 276 M*/ 277 278 /*MC 279 MPIU_INT - MPI datatype corresponding to PetscInt 280 281 Notes: 282 In MPI calls that require an MPI datatype that matches a PetscInt or array of PetscInt values, pass this value. 283 284 Level: beginner 285 286 .seealso: PetscReal, PetscScalar, PetscComplex, PetscInt, MPIU_REAL, MPIU_SCALAR, MPIU_COMPLEX 287 M*/ 288 289 #if defined(PETSC_HAVE_STDINT_H) && defined(PETSC_HAVE_INTTYPES_H) && defined(PETSC_HAVE_MPI_INT64_T) /* MPI_INT64_T is not guaranteed to be a macro */ 290 typedef int64_t PetscInt64; 291 # define MPIU_INT64 MPI_INT64_T 292 # define PetscInt64_FMT PRId64 293 #elif (PETSC_SIZEOF_LONG_LONG == 8) 294 typedef long long PetscInt64; 295 # define MPIU_INT64 MPI_LONG_LONG_INT 296 # define PetscInt64_FMT "lld" 297 #elif defined(PETSC_HAVE___INT64) 298 typedef __int64 PetscInt64; 299 # define MPIU_INT64 MPI_INT64_T 300 # define PetscInt64_FMT "ld" 301 #else 302 #error "cannot determine PetscInt64 type" 303 #endif 304 305 #if PETSC_SIZEOF_VOID_P == 4 306 #define MPIU_FORTRANADDR MPI_INT 307 #else 308 #define MPIU_FORTRANADDR MPIU_INT64 309 #endif 310 311 #if defined(PETSC_USE_64BIT_INDICES) 312 typedef PetscInt64 PetscInt; 313 #define MPIU_INT MPIU_INT64 314 #define PetscInt_FMT PetscInt64_FMT 315 #else 316 typedef int PetscInt; 317 #define MPIU_INT MPI_INT 318 #define PetscInt_FMT "d" 319 #endif 320 321 /*MC 322 PetscBLASInt - datatype used to represent 'int' parameters to BLAS/LAPACK functions. 323 324 Notes: 325 Usually this is the same as PetscInt, but if PETSc was built with --with-64-bit-indices but 326 standard C/Fortran integers are 32 bit then this is NOT the same as PetscInt it remains 32 bit 327 (except on very rare BLAS/LAPACK implementations that support 64 bit integers see the note below). 328 329 PetscErrorCode PetscBLASIntCast(a,&b) checks if the given PetscInt a will fit in a PetscBLASInt, if not it 330 generates a PETSC_ERR_ARG_OUTOFRANGE error 331 332 Installation Notes: 333 The 64bit versions of MATLAB ship with BLAS and LAPACK that use 64 bit integers for sizes etc, 334 if you run ./configure with the option 335 --with-blaslapack-lib=[/Applications/MATLAB_R2010b.app/bin/maci64/libmwblas.dylib,/Applications/MATLAB_R2010b.app/bin/maci64/libmwlapack.dylib] 336 but you need to also use --known-64-bit-blas-indices. 337 338 MKL also ships with 64 bit integer versions of the BLAS and LAPACK, if you select those you must also ./configure with 339 --known-64-bit-blas-indices 340 341 OpenBLAS can also be built to use 64 bit integers. The ./configure options --download-openblas -download-openblas-64-bit-blas-indices 342 will build a 64 bit integer version 343 344 Developer Notes: 345 Eventually ./configure should automatically determine the size of the integers used by BLAS/LAPACK. 346 347 External packages such as hypre, ML, SuperLU etc do not provide any support for passing 64 bit integers to BLAS/LAPACK so cannot 348 be used with PETSc if you have set PetscBLASInt to long int. 349 350 Level: intermediate 351 352 .seealso: PetscMPIInt, PetscInt, PetscBLASIntCast() 353 354 M*/ 355 #if defined(PETSC_HAVE_64BIT_BLAS_INDICES) 356 typedef PetscInt64 PetscBLASInt; 357 #else 358 typedef int PetscBLASInt; 359 #endif 360 361 /* 362 For the rare cases when one needs to send a size_t object with MPI 363 */ 364 #if (PETSC_SIZEOF_SIZE_T) == (PETSC_SIZEOF_INT) 365 #define MPIU_SIZE_T MPI_UNSIGNED 366 #elif (PETSC_SIZEOF_SIZE_T) == (PETSC_SIZEOF_LONG) 367 #define MPIU_SIZE_T MPI_UNSIGNED_LONG 368 #elif (PETSC_SIZEOF_SIZE_T) == (PETSC_SIZEOF_LONG_LONG) 369 #define MPIU_SIZE_T MPI_UNSIGNED_LONG_LONG 370 #else 371 #error "Unknown size for size_t! Send us a bugreport at petsc-maint@mcs.anl.gov" 372 #endif 373 374 /* 375 You can use PETSC_STDOUT as a replacement of stdout. You can also change 376 the value of PETSC_STDOUT to redirect all standard output elsewhere 377 */ 378 PETSC_EXTERN FILE* PETSC_STDOUT; 379 380 /* 381 You can use PETSC_STDERR as a replacement of stderr. You can also change 382 the value of PETSC_STDERR to redirect all standard error elsewhere 383 */ 384 PETSC_EXTERN FILE* PETSC_STDERR; 385 386 /*MC 387 PetscUnlikely - hints the compiler that the given condition is usually FALSE 388 389 Synopsis: 390 #include <petscsys.h> 391 PetscBool PetscUnlikely(PetscBool cond) 392 393 Not Collective 394 395 Input Parameters: 396 . cond - condition or expression 397 398 Notes: 399 This returns the same truth value, it is only a hint to compilers that the resulting 400 branch is unlikely. 401 402 Level: advanced 403 404 .seealso: PetscLikely(), CHKERRQ 405 M*/ 406 407 /*MC 408 PetscLikely - hints the compiler that the given condition is usually TRUE 409 410 Synopsis: 411 #include <petscsys.h> 412 PetscBool PetscLikely(PetscBool cond) 413 414 Not Collective 415 416 Input Parameters: 417 . cond - condition or expression 418 419 Notes: 420 This returns the same truth value, it is only a hint to compilers that the resulting 421 branch is likely. 422 423 Level: advanced 424 425 .seealso: PetscUnlikely() 426 M*/ 427 #if defined(PETSC_HAVE_BUILTIN_EXPECT) 428 # define PetscUnlikely(cond) __builtin_expect(!!(cond),0) 429 # define PetscLikely(cond) __builtin_expect(!!(cond),1) 430 #else 431 # define PetscUnlikely(cond) (cond) 432 # define PetscLikely(cond) (cond) 433 #endif 434 435 /* 436 Declare extern C stuff after including external header files 437 */ 438 439 440 /* 441 Basic PETSc constants 442 */ 443 444 /*E 445 PetscBool - Logical variable. Actually an int in C and a logical in Fortran. 446 447 Level: beginner 448 449 Developer Note: 450 Why have PetscBool , why not use bool in C? The problem is that K and R C, C99 and C++ all have different mechanisms for 451 boolean values. It is not easy to have a simple macro that that will work properly in all circumstances with all three mechanisms. 452 453 .seealso: PETSC_TRUE, PETSC_FALSE, PetscNot() 454 E*/ 455 typedef enum { PETSC_FALSE,PETSC_TRUE } PetscBool; 456 PETSC_EXTERN const char *const PetscBools[]; 457 PETSC_EXTERN MPI_Datatype MPIU_BOOL PetscAttrMPITypeTag(PetscBool); 458 459 /* 460 Defines elementary mathematics functions and constants. 461 */ 462 #include <petscmath.h> 463 464 /*E 465 PetscCopyMode - Determines how an array passed to certain functions is copied or retained 466 467 Level: beginner 468 469 $ PETSC_COPY_VALUES - the array values are copied into new space, the user is free to reuse or delete the passed in array 470 $ PETSC_OWN_POINTER - the array values are NOT copied, the object takes ownership of the array and will free it later, the user cannot change or 471 $ delete the array. The array MUST have been obtained with PetscMalloc(). Hence this mode cannot be used in Fortran. 472 $ PETSC_USE_POINTER - the array values are NOT copied, the object uses the array but does NOT take ownership of the array. The user cannot use 473 the array but the user must delete the array after the object is destroyed. 474 475 E*/ 476 typedef enum { PETSC_COPY_VALUES, PETSC_OWN_POINTER, PETSC_USE_POINTER} PetscCopyMode; 477 PETSC_EXTERN const char *const PetscCopyModes[]; 478 479 /*MC 480 PETSC_FALSE - False value of PetscBool 481 482 Level: beginner 483 484 Note: 485 Zero integer 486 487 .seealso: PetscBool, PETSC_TRUE 488 M*/ 489 490 /*MC 491 PETSC_TRUE - True value of PetscBool 492 493 Level: beginner 494 495 Note: 496 Nonzero integer 497 498 .seealso: PetscBool, PETSC_FALSE 499 M*/ 500 501 /*MC 502 PETSC_IGNORE - same as NULL, means PETSc will ignore this argument 503 504 Level: beginner 505 506 Note: 507 Accepted by many PETSc functions to not set a parameter and instead use 508 some default 509 510 Fortran Notes: 511 This macro does not exist in Fortran; you must use PETSC_NULL_INTEGER, 512 PETSC_NULL_DOUBLE_PRECISION etc 513 514 .seealso: PETSC_DECIDE, PETSC_DEFAULT, PETSC_DETERMINE 515 516 M*/ 517 #define PETSC_IGNORE NULL 518 519 /* This is deprecated */ 520 #define PETSC_NULL NULL 521 522 /*MC 523 PETSC_DECIDE - standard way of passing in integer or floating point parameter 524 where you wish PETSc to use the default. 525 526 Level: beginner 527 528 .seealso: PETSC_DEFAULT, PETSC_IGNORE, PETSC_DETERMINE 529 530 M*/ 531 #define PETSC_DECIDE -1 532 533 /*MC 534 PETSC_DETERMINE - standard way of passing in integer or floating point parameter 535 where you wish PETSc to compute the required value. 536 537 Level: beginner 538 539 Developer Note: 540 I would like to use const PetscInt PETSC_DETERMINE = PETSC_DECIDE; but for 541 some reason this is not allowed by the standard even though PETSC_DECIDE is a constant value. 542 543 .seealso: PETSC_DECIDE, PETSC_DEFAULT, PETSC_IGNORE, VecSetSizes() 544 545 M*/ 546 #define PETSC_DETERMINE PETSC_DECIDE 547 548 /*MC 549 PETSC_DEFAULT - standard way of passing in integer or floating point parameter 550 where you wish PETSc to use the default. 551 552 Level: beginner 553 554 Fortran Notes: 555 You need to use PETSC_DEFAULT_INTEGER or PETSC_DEFAULT_REAL. 556 557 .seealso: PETSC_DECIDE, PETSC_IGNORE, PETSC_DETERMINE 558 559 M*/ 560 #define PETSC_DEFAULT -2 561 562 /*MC 563 PETSC_COMM_WORLD - the equivalent of the MPI_COMM_WORLD communicator which represents 564 all the processs that PETSc knows about. 565 566 Level: beginner 567 568 Notes: 569 By default PETSC_COMM_WORLD and MPI_COMM_WORLD are identical unless you wish to 570 run PETSc on ONLY a subset of MPI_COMM_WORLD. In that case create your new (smaller) 571 communicator, call it, say comm, and set PETSC_COMM_WORLD = comm BEFORE calling 572 PetscInitialize(), but after MPI_Init() has been called. 573 574 The value of PETSC_COMM_WORLD should never be USED/accessed before PetscInitialize() 575 is called because it may not have a valid value yet. 576 577 .seealso: PETSC_COMM_SELF 578 579 M*/ 580 PETSC_EXTERN MPI_Comm PETSC_COMM_WORLD; 581 582 /*MC 583 PETSC_COMM_SELF - This is always MPI_COMM_SELF 584 585 Level: beginner 586 587 Notes: 588 Do not USE/access or set this variable before PetscInitialize() has been called. 589 590 .seealso: PETSC_COMM_WORLD 591 592 M*/ 593 #define PETSC_COMM_SELF MPI_COMM_SELF 594 595 PETSC_EXTERN PetscBool PetscBeganMPI; 596 PETSC_EXTERN PetscBool PetscInitializeCalled; 597 PETSC_EXTERN PetscBool PetscFinalizeCalled; 598 PETSC_EXTERN PetscBool PetscViennaCLSynchronize; 599 PETSC_EXTERN PetscBool PetscCUDASynchronize; 600 601 PETSC_EXTERN PetscErrorCode PetscSetHelpVersionFunctions(PetscErrorCode (*)(MPI_Comm),PetscErrorCode (*)(MPI_Comm)); 602 PETSC_EXTERN PetscErrorCode PetscCommDuplicate(MPI_Comm,MPI_Comm*,int*); 603 PETSC_EXTERN PetscErrorCode PetscCommDestroy(MPI_Comm*); 604 605 /*MC 606 PetscMalloc - Allocates memory, One should use PetscNew(), PetscMalloc1() or PetscCalloc1() usually instead of this 607 608 Synopsis: 609 #include <petscsys.h> 610 PetscErrorCode PetscMalloc(size_t m,void **result) 611 612 Not Collective 613 614 Input Parameter: 615 . m - number of bytes to allocate 616 617 Output Parameter: 618 . result - memory allocated 619 620 Level: beginner 621 622 Notes: 623 Memory is always allocated at least double aligned 624 625 It is safe to allocate size 0 and pass the resulting pointer (which may or may not be NULL) to PetscFree(). 626 627 .seealso: PetscFree(), PetscNew() 628 629 Concepts: memory allocation 630 631 M*/ 632 #define PetscMalloc(a,b) ((*PetscTrMalloc)((a),__LINE__,PETSC_FUNCTION_NAME,__FILE__,(void**)(b))) 633 634 /*MC 635 PetscRealloc - Rellocates memory 636 637 Synopsis: 638 #include <petscsys.h> 639 PetscErrorCode PetscRealloc(size_t m,void **result) 640 641 Not Collective 642 643 Input Parameters: 644 + m - number of bytes to allocate 645 - result - initial memory allocated 646 647 Output Parameter: 648 . result - new memory allocated 649 650 Level: developer 651 652 Notes: 653 Memory is always allocated at least double aligned 654 655 .seealso: PetscMalloc(), PetscFree(), PetscNew() 656 657 Concepts: memory allocation 658 659 M*/ 660 #define PetscRealloc(a,b) ((*PetscTrRealloc)((a),__LINE__,PETSC_FUNCTION_NAME,__FILE__,(void**)(b))) 661 662 /*MC 663 PetscAddrAlign - Rounds up an address to PETSC_MEMALIGN alignment 664 665 Synopsis: 666 #include <petscsys.h> 667 void *PetscAddrAlign(void *addr) 668 669 Not Collective 670 671 Input Parameters: 672 . addr - address to align (any pointer type) 673 674 Level: developer 675 676 .seealso: PetscMallocAlign() 677 678 Concepts: memory allocation 679 M*/ 680 #define PetscAddrAlign(a) (void*)((((PETSC_UINTPTR_T)(a))+(PETSC_MEMALIGN-1)) & ~(PETSC_MEMALIGN-1)) 681 682 /*MC 683 PetscMalloc1 - Allocates an array of memory aligned to PETSC_MEMALIGN 684 685 Synopsis: 686 #include <petscsys.h> 687 PetscErrorCode PetscMalloc1(size_t m1,type **r1) 688 689 Not Collective 690 691 Input Parameter: 692 . m1 - number of elements to allocate (may be zero) 693 694 Output Parameter: 695 . r1 - memory allocated in first chunk 696 697 Note: 698 This uses the sizeof() of the memory type requested to determine the total memory to be allocated, therefore you should not 699 multiply the number of elements requested by the sizeof() the type. For example use 700 $ PetscInt *id; 701 $ PetscMalloc1(10,&id); 702 not 703 $ PetscInt *id; 704 $ PetscMalloc1(10*sizeof(PetscInt),&id); 705 706 Does not zero the memory allocatd, used PetscCalloc1() to obtain memory that has been zeroed. 707 708 Level: beginner 709 710 .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscCalloc1(), PetscMalloc2() 711 712 Concepts: memory allocation 713 714 M*/ 715 #define PetscMalloc1(m1,r1) PetscMallocA(1,PETSC_FALSE,__LINE__,PETSC_FUNCTION_NAME,__FILE__,(size_t)(m1)*sizeof(**(r1)),(r1)) 716 717 /*MC 718 PetscCalloc1 - Allocates a cleared (zeroed) array of memory aligned to PETSC_MEMALIGN 719 720 Synopsis: 721 #include <petscsys.h> 722 PetscErrorCode PetscCalloc1(size_t m1,type **r1) 723 724 Not Collective 725 726 Input Parameter: 727 . m1 - number of elements to allocate in 1st chunk (may be zero) 728 729 Output Parameter: 730 . r1 - memory allocated in first chunk 731 732 Notes: 733 See PetsMalloc1() for more details on usage. 734 735 Level: beginner 736 737 .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc1(), PetscCalloc2() 738 739 Concepts: memory allocation 740 741 M*/ 742 #define PetscCalloc1(m1,r1) PetscMallocA(1,PETSC_TRUE,__LINE__,PETSC_FUNCTION_NAME,__FILE__,(size_t)(m1)*sizeof(**(r1)),(r1)) 743 744 /*MC 745 PetscMalloc2 - Allocates 2 arrays of memory both aligned to PETSC_MEMALIGN 746 747 Synopsis: 748 #include <petscsys.h> 749 PetscErrorCode PetscMalloc2(size_t m1,type **r1,size_t m2,type **r2) 750 751 Not Collective 752 753 Input Parameter: 754 + m1 - number of elements to allocate in 1st chunk (may be zero) 755 - m2 - number of elements to allocate in 2nd chunk (may be zero) 756 757 Output Parameter: 758 + r1 - memory allocated in first chunk 759 - r2 - memory allocated in second chunk 760 761 Level: developer 762 763 .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc1(), PetscCalloc2() 764 765 Concepts: memory allocation 766 767 M*/ 768 #define PetscMalloc2(m1,r1,m2,r2) PetscMallocA(2,PETSC_FALSE,__LINE__,PETSC_FUNCTION_NAME,__FILE__,(size_t)(m1)*sizeof(**(r1)),(r1),(size_t)(m2)*sizeof(**(r2)),(r2)) 769 770 /*MC 771 PetscCalloc2 - Allocates 2 cleared (zeroed) arrays of memory both aligned to PETSC_MEMALIGN 772 773 Synopsis: 774 #include <petscsys.h> 775 PetscErrorCode PetscCalloc2(size_t m1,type **r1,size_t m2,type **r2) 776 777 Not Collective 778 779 Input Parameter: 780 + m1 - number of elements to allocate in 1st chunk (may be zero) 781 - m2 - number of elements to allocate in 2nd chunk (may be zero) 782 783 Output Parameter: 784 + r1 - memory allocated in first chunk 785 - r2 - memory allocated in second chunk 786 787 Level: developer 788 789 .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscCalloc1(), PetscMalloc2() 790 791 Concepts: memory allocation 792 M*/ 793 #define PetscCalloc2(m1,r1,m2,r2) PetscMallocA(2,PETSC_TRUE,__LINE__,PETSC_FUNCTION_NAME,__FILE__,(size_t)(m1)*sizeof(**(r1)),(r1),(size_t)(m2)*sizeof(**(r2)),(r2)) 794 795 /*MC 796 PetscMalloc3 - Allocates 3 arrays of memory, all aligned to PETSC_MEMALIGN 797 798 Synopsis: 799 #include <petscsys.h> 800 PetscErrorCode PetscMalloc3(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3) 801 802 Not Collective 803 804 Input Parameter: 805 + m1 - number of elements to allocate in 1st chunk (may be zero) 806 . m2 - number of elements to allocate in 2nd chunk (may be zero) 807 - m3 - number of elements to allocate in 3rd chunk (may be zero) 808 809 Output Parameter: 810 + r1 - memory allocated in first chunk 811 . r2 - memory allocated in second chunk 812 - r3 - memory allocated in third chunk 813 814 Level: developer 815 816 .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscCalloc3(), PetscFree3() 817 818 Concepts: memory allocation 819 820 M*/ 821 #define PetscMalloc3(m1,r1,m2,r2,m3,r3) PetscMallocA(3,PETSC_FALSE,__LINE__,PETSC_FUNCTION_NAME,__FILE__,(size_t)(m1)*sizeof(**(r1)),(r1),(size_t)(m2)*sizeof(**(r2)),(r2),(size_t)(m3)*sizeof(**(r3)),(r3)) 822 823 /*MC 824 PetscCalloc3 - Allocates 3 cleared (zeroed) arrays of memory, all aligned to PETSC_MEMALIGN 825 826 Synopsis: 827 #include <petscsys.h> 828 PetscErrorCode PetscCalloc3(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3) 829 830 Not Collective 831 832 Input Parameter: 833 + m1 - number of elements to allocate in 1st chunk (may be zero) 834 . m2 - number of elements to allocate in 2nd chunk (may be zero) 835 - m3 - number of elements to allocate in 3rd chunk (may be zero) 836 837 Output Parameter: 838 + r1 - memory allocated in first chunk 839 . r2 - memory allocated in second chunk 840 - r3 - memory allocated in third chunk 841 842 Level: developer 843 844 .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscCalloc2(), PetscMalloc3(), PetscFree3() 845 846 Concepts: memory allocation 847 M*/ 848 #define PetscCalloc3(m1,r1,m2,r2,m3,r3) PetscMallocA(3,PETSC_TRUE,__LINE__,PETSC_FUNCTION_NAME,__FILE__,(size_t)(m1)*sizeof(**(r1)),(r1),(size_t)(m2)*sizeof(**(r2)),(r2),(size_t)(m3)*sizeof(**(r3)),(r3)) 849 850 /*MC 851 PetscMalloc4 - Allocates 4 arrays of memory, all aligned to PETSC_MEMALIGN 852 853 Synopsis: 854 #include <petscsys.h> 855 PetscErrorCode PetscMalloc4(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3,size_t m4,type **r4) 856 857 Not Collective 858 859 Input Parameter: 860 + m1 - number of elements to allocate in 1st chunk (may be zero) 861 . m2 - number of elements to allocate in 2nd chunk (may be zero) 862 . m3 - number of elements to allocate in 3rd chunk (may be zero) 863 - m4 - number of elements to allocate in 4th chunk (may be zero) 864 865 Output Parameter: 866 + r1 - memory allocated in first chunk 867 . r2 - memory allocated in second chunk 868 . r3 - memory allocated in third chunk 869 - r4 - memory allocated in fourth chunk 870 871 Level: developer 872 873 .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscCalloc4(), PetscFree4() 874 875 Concepts: memory allocation 876 877 M*/ 878 #define PetscMalloc4(m1,r1,m2,r2,m3,r3,m4,r4) PetscMallocA(4,PETSC_FALSE,__LINE__,PETSC_FUNCTION_NAME,__FILE__,(size_t)(m1)*sizeof(**(r1)),(r1),(size_t)(m2)*sizeof(**(r2)),(r2),(size_t)(m3)*sizeof(**(r3)),(r3),(size_t)(m4)*sizeof(**(r4)),(r4)) 879 880 /*MC 881 PetscCalloc4 - Allocates 4 cleared (zeroed) arrays of memory, all aligned to PETSC_MEMALIGN 882 883 Synopsis: 884 #include <petscsys.h> 885 PetscErrorCode PetscCalloc4(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3,size_t m4,type **r4) 886 887 Not Collective 888 889 Input Parameters: 890 + m1 - number of elements to allocate in 1st chunk (may be zero) 891 . m2 - number of elements to allocate in 2nd chunk (may be zero) 892 . m3 - number of elements to allocate in 3rd chunk (may be zero) 893 - m4 - number of elements to allocate in 4th chunk (may be zero) 894 895 Output Parameters: 896 + r1 - memory allocated in first chunk 897 . r2 - memory allocated in second chunk 898 . r3 - memory allocated in third chunk 899 - r4 - memory allocated in fourth chunk 900 901 Level: developer 902 903 .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscCalloc4(), PetscFree4() 904 905 Concepts: memory allocation 906 907 M*/ 908 #define PetscCalloc4(m1,r1,m2,r2,m3,r3,m4,r4) PetscMallocA(4,PETSC_TRUE,__LINE__,PETSC_FUNCTION_NAME,__FILE__,(size_t)(m1)*sizeof(**(r1)),(r1),(size_t)(m2)*sizeof(**(r2)),(r2),(size_t)(m3)*sizeof(**(r3)),(r3),(size_t)(m4)*sizeof(**(r4)),(r4)) 909 910 /*MC 911 PetscMalloc5 - Allocates 5 arrays of memory, all aligned to PETSC_MEMALIGN 912 913 Synopsis: 914 #include <petscsys.h> 915 PetscErrorCode PetscMalloc5(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3,size_t m4,type **r4,size_t m5,type **r5) 916 917 Not Collective 918 919 Input Parameters: 920 + m1 - number of elements to allocate in 1st chunk (may be zero) 921 . m2 - number of elements to allocate in 2nd chunk (may be zero) 922 . m3 - number of elements to allocate in 3rd chunk (may be zero) 923 . m4 - number of elements to allocate in 4th chunk (may be zero) 924 - m5 - number of elements to allocate in 5th chunk (may be zero) 925 926 Output Parameters: 927 + r1 - memory allocated in first chunk 928 . r2 - memory allocated in second chunk 929 . r3 - memory allocated in third chunk 930 . r4 - memory allocated in fourth chunk 931 - r5 - memory allocated in fifth chunk 932 933 Level: developer 934 935 .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscCalloc5(), PetscFree5() 936 937 Concepts: memory allocation 938 939 M*/ 940 #define PetscMalloc5(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5) PetscMallocA(5,PETSC_FALSE,__LINE__,PETSC_FUNCTION_NAME,__FILE__,(size_t)(m1)*sizeof(**(r1)),(r1),(size_t)(m2)*sizeof(**(r2)),(r2),(size_t)(m3)*sizeof(**(r3)),(r3),(size_t)(m4)*sizeof(**(r4)),(r4),(size_t)(m5)*sizeof(**(r5)),(r5)) 941 942 /*MC 943 PetscCalloc5 - Allocates 5 cleared (zeroed) arrays of memory, all aligned to PETSC_MEMALIGN 944 945 Synopsis: 946 #include <petscsys.h> 947 PetscErrorCode PetscCalloc5(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3,size_t m4,type **r4,size_t m5,type **r5) 948 949 Not Collective 950 951 Input Parameters: 952 + m1 - number of elements to allocate in 1st chunk (may be zero) 953 . m2 - number of elements to allocate in 2nd chunk (may be zero) 954 . m3 - number of elements to allocate in 3rd chunk (may be zero) 955 . m4 - number of elements to allocate in 4th chunk (may be zero) 956 - m5 - number of elements to allocate in 5th chunk (may be zero) 957 958 Output Parameters: 959 + r1 - memory allocated in first chunk 960 . r2 - memory allocated in second chunk 961 . r3 - memory allocated in third chunk 962 . r4 - memory allocated in fourth chunk 963 - r5 - memory allocated in fifth chunk 964 965 Level: developer 966 967 .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc5(), PetscFree5() 968 969 Concepts: memory allocation 970 971 M*/ 972 #define PetscCalloc5(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5) PetscMallocA(5,PETSC_TRUE,__LINE__,PETSC_FUNCTION_NAME,__FILE__,(size_t)(m1)*sizeof(**(r1)),(r1),(size_t)(m2)*sizeof(**(r2)),(r2),(size_t)(m3)*sizeof(**(r3)),(r3),(size_t)(m4)*sizeof(**(r4)),(r4),(size_t)(m5)*sizeof(**(r5)),(r5)) 973 974 /*MC 975 PetscMalloc6 - Allocates 6 arrays of memory, all aligned to PETSC_MEMALIGN 976 977 Synopsis: 978 #include <petscsys.h> 979 PetscErrorCode PetscMalloc6(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3,size_t m4,type **r4,size_t m5,type **r5,size_t m6,type **r6) 980 981 Not Collective 982 983 Input Parameters: 984 + m1 - number of elements to allocate in 1st chunk (may be zero) 985 . m2 - number of elements to allocate in 2nd chunk (may be zero) 986 . m3 - number of elements to allocate in 3rd chunk (may be zero) 987 . m4 - number of elements to allocate in 4th chunk (may be zero) 988 . m5 - number of elements to allocate in 5th chunk (may be zero) 989 - m6 - number of elements to allocate in 6th chunk (may be zero) 990 991 Output Parameteasr: 992 + r1 - memory allocated in first chunk 993 . r2 - memory allocated in second chunk 994 . r3 - memory allocated in third chunk 995 . r4 - memory allocated in fourth chunk 996 . r5 - memory allocated in fifth chunk 997 - r6 - memory allocated in sixth chunk 998 999 Level: developer 1000 1001 .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscCalloc6(), PetscFree3(), PetscFree4(), PetscFree5(), PetscFree6() 1002 1003 Concepts: memory allocation 1004 1005 M*/ 1006 #define PetscMalloc6(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5,m6,r6) PetscMallocA(6,PETSC_FALSE,__LINE__,PETSC_FUNCTION_NAME,__FILE__,(size_t)(m1)*sizeof(**(r1)),(r1),(size_t)(m2)*sizeof(**(r2)),(r2),(size_t)(m3)*sizeof(**(r3)),(r3),(size_t)(m4)*sizeof(**(r4)),(r4),(size_t)(m5)*sizeof(**(r5)),(r5),(size_t)(m6)*sizeof(**(r6)),(r6)) 1007 1008 /*MC 1009 PetscCalloc6 - Allocates 6 cleared (zeroed) arrays of memory, all aligned to PETSC_MEMALIGN 1010 1011 Synopsis: 1012 #include <petscsys.h> 1013 PetscErrorCode PetscCalloc6(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3,size_t m4,type **r4,size_t m5,type **r5,size_t m6,type **r6) 1014 1015 Not Collective 1016 1017 Input Parameters: 1018 + m1 - number of elements to allocate in 1st chunk (may be zero) 1019 . m2 - number of elements to allocate in 2nd chunk (may be zero) 1020 . m3 - number of elements to allocate in 3rd chunk (may be zero) 1021 . m4 - number of elements to allocate in 4th chunk (may be zero) 1022 . m5 - number of elements to allocate in 5th chunk (may be zero) 1023 - m6 - number of elements to allocate in 6th chunk (may be zero) 1024 1025 Output Parameters: 1026 + r1 - memory allocated in first chunk 1027 . r2 - memory allocated in second chunk 1028 . r3 - memory allocated in third chunk 1029 . r4 - memory allocated in fourth chunk 1030 . r5 - memory allocated in fifth chunk 1031 - r6 - memory allocated in sixth chunk 1032 1033 Level: developer 1034 1035 .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscMalloc6(), PetscFree6() 1036 1037 Concepts: memory allocation 1038 M*/ 1039 #define PetscCalloc6(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5,m6,r6) PetscMallocA(6,PETSC_TRUE,__LINE__,PETSC_FUNCTION_NAME,__FILE__,(size_t)(m1)*sizeof(**(r1)),(r1),(size_t)(m2)*sizeof(**(r2)),(r2),(size_t)(m3)*sizeof(**(r3)),(r3),(size_t)(m4)*sizeof(**(r4)),(r4),(size_t)(m5)*sizeof(**(r5)),(r5),(size_t)(m6)*sizeof(**(r6)),(r6)) 1040 1041 /*MC 1042 PetscMalloc7 - Allocates 7 arrays of memory, all aligned to PETSC_MEMALIGN 1043 1044 Synopsis: 1045 #include <petscsys.h> 1046 PetscErrorCode PetscMalloc7(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3,size_t m4,type **r4,size_t m5,type **r5,size_t m6,type **r6,size_t m7,type **r7) 1047 1048 Not Collective 1049 1050 Input Parameters: 1051 + m1 - number of elements to allocate in 1st chunk (may be zero) 1052 . m2 - number of elements to allocate in 2nd chunk (may be zero) 1053 . m3 - number of elements to allocate in 3rd chunk (may be zero) 1054 . m4 - number of elements to allocate in 4th chunk (may be zero) 1055 . m5 - number of elements to allocate in 5th chunk (may be zero) 1056 . m6 - number of elements to allocate in 6th chunk (may be zero) 1057 - m7 - number of elements to allocate in 7th chunk (may be zero) 1058 1059 Output Parameters: 1060 + r1 - memory allocated in first chunk 1061 . r2 - memory allocated in second chunk 1062 . r3 - memory allocated in third chunk 1063 . r4 - memory allocated in fourth chunk 1064 . r5 - memory allocated in fifth chunk 1065 . r6 - memory allocated in sixth chunk 1066 - r7 - memory allocated in seventh chunk 1067 1068 Level: developer 1069 1070 .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscCalloc7(), PetscFree7() 1071 1072 Concepts: memory allocation 1073 1074 M*/ 1075 #define PetscMalloc7(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5,m6,r6,m7,r7) PetscMallocA(7,PETSC_FALSE,__LINE__,PETSC_FUNCTION_NAME,__FILE__,(size_t)(m1)*sizeof(**(r1)),(r1),(size_t)(m2)*sizeof(**(r2)),(r2),(size_t)(m3)*sizeof(**(r3)),(r3),(size_t)(m4)*sizeof(**(r4)),(r4),(size_t)(m5)*sizeof(**(r5)),(r5),(size_t)(m6)*sizeof(**(r6)),(r6),(size_t)(m7)*sizeof(**(r7)),(r7)) 1076 1077 /*MC 1078 PetscCalloc7 - Allocates 7 cleared (zeroed) arrays of memory, all aligned to PETSC_MEMALIGN 1079 1080 Synopsis: 1081 #include <petscsys.h> 1082 PetscErrorCode PetscCalloc7(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3,size_t m4,type **r4,size_t m5,type **r5,size_t m6,type **r6,size_t m7,type **r7) 1083 1084 Not Collective 1085 1086 Input Parameters: 1087 + m1 - number of elements to allocate in 1st chunk (may be zero) 1088 . m2 - number of elements to allocate in 2nd chunk (may be zero) 1089 . m3 - number of elements to allocate in 3rd chunk (may be zero) 1090 . m4 - number of elements to allocate in 4th chunk (may be zero) 1091 . m5 - number of elements to allocate in 5th chunk (may be zero) 1092 . m6 - number of elements to allocate in 6th chunk (may be zero) 1093 - m7 - number of elements to allocate in 7th chunk (may be zero) 1094 1095 Output Parameters: 1096 + r1 - memory allocated in first chunk 1097 . r2 - memory allocated in second chunk 1098 . r3 - memory allocated in third chunk 1099 . r4 - memory allocated in fourth chunk 1100 . r5 - memory allocated in fifth chunk 1101 . r6 - memory allocated in sixth chunk 1102 - r7 - memory allocated in seventh chunk 1103 1104 Level: developer 1105 1106 .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscMalloc7(), PetscFree7() 1107 1108 Concepts: memory allocation 1109 M*/ 1110 #define PetscCalloc7(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5,m6,r6,m7,r7) PetscMallocA(7,PETSC_TRUE,__LINE__,PETSC_FUNCTION_NAME,__FILE__,(size_t)(m1)*sizeof(**(r1)),(r1),(size_t)(m2)*sizeof(**(r2)),(r2),(size_t)(m3)*sizeof(**(r3)),(r3),(size_t)(m4)*sizeof(**(r4)),(r4),(size_t)(m5)*sizeof(**(r5)),(r5),(size_t)(m6)*sizeof(**(r6)),(r6),(size_t)(m7)*sizeof(**(r7)),(r7)) 1111 1112 /*MC 1113 PetscNew - Allocates memory of a particular type, zeros the memory! Aligned to PETSC_MEMALIGN 1114 1115 Synopsis: 1116 #include <petscsys.h> 1117 PetscErrorCode PetscNew(type **result) 1118 1119 Not Collective 1120 1121 Output Parameter: 1122 . result - memory allocated, sized to match pointer type 1123 1124 Level: beginner 1125 1126 .seealso: PetscFree(), PetscMalloc(), PetscNewLog(), PetscCalloc1(), PetscMalloc1() 1127 1128 Concepts: memory allocation 1129 1130 M*/ 1131 #define PetscNew(b) PetscCalloc1(1,(b)) 1132 1133 /*MC 1134 PetscNewLog - Allocates memory of a type matching pointer, zeros the memory! Aligned to PETSC_MEMALIGN. Associates the memory allocated 1135 with the given object using PetscLogObjectMemory(). 1136 1137 Synopsis: 1138 #include <petscsys.h> 1139 PetscErrorCode PetscNewLog(PetscObject obj,type **result) 1140 1141 Not Collective 1142 1143 Input Parameter: 1144 . obj - object memory is logged to 1145 1146 Output Parameter: 1147 . result - memory allocated, sized to match pointer type 1148 1149 Level: developer 1150 1151 .seealso: PetscFree(), PetscMalloc(), PetscNew(), PetscLogObjectMemory(), PetscCalloc1(), PetscMalloc1() 1152 1153 Concepts: memory allocation 1154 1155 M*/ 1156 #define PetscNewLog(o,b) (PetscNew((b)) || PetscLogObjectMemory((PetscObject)o,sizeof(**(b)))) 1157 1158 /*MC 1159 PetscFree - Frees memory 1160 1161 Synopsis: 1162 #include <petscsys.h> 1163 PetscErrorCode PetscFree(void *memory) 1164 1165 Not Collective 1166 1167 Input Parameter: 1168 . memory - memory to free (the pointer is ALWAYS set to NULL upon sucess) 1169 1170 Level: beginner 1171 1172 Notes: 1173 Do not free memory obtained with PetscMalloc2(), PetscCalloc2() etc, they must be freed with PetscFree2() etc. 1174 1175 It is safe to call PetscFree() on a NULL pointer. 1176 1177 .seealso: PetscNew(), PetscMalloc(), PetscNewLog(), PetscMalloc1(), PetscCalloc1() 1178 1179 Concepts: memory allocation 1180 1181 M*/ 1182 #define PetscFree(a) ((*PetscTrFree)((void*)(a),__LINE__,PETSC_FUNCTION_NAME,__FILE__) || ((a) = 0,0)) 1183 1184 /*MC 1185 PetscFree2 - Frees 2 chunks of memory obtained with PetscMalloc2() 1186 1187 Synopsis: 1188 #include <petscsys.h> 1189 PetscErrorCode PetscFree2(void *memory1,void *memory2) 1190 1191 Not Collective 1192 1193 Input Parameters: 1194 + memory1 - memory to free 1195 - memory2 - 2nd memory to free 1196 1197 Level: developer 1198 1199 Notes: Memory must have been obtained with PetscMalloc2() 1200 1201 .seealso: PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree() 1202 1203 Concepts: memory allocation 1204 1205 M*/ 1206 #define PetscFree2(m1,m2) PetscFreeA(2,__LINE__,PETSC_FUNCTION_NAME,__FILE__,&(m1),&(m2)) 1207 1208 /*MC 1209 PetscFree3 - Frees 3 chunks of memory obtained with PetscMalloc3() 1210 1211 Synopsis: 1212 #include <petscsys.h> 1213 PetscErrorCode PetscFree3(void *memory1,void *memory2,void *memory3) 1214 1215 Not Collective 1216 1217 Input Parameters: 1218 + memory1 - memory to free 1219 . memory2 - 2nd memory to free 1220 - memory3 - 3rd memory to free 1221 1222 Level: developer 1223 1224 Notes: Memory must have been obtained with PetscMalloc3() 1225 1226 .seealso: PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree(), PetscMalloc3() 1227 1228 Concepts: memory allocation 1229 1230 M*/ 1231 #define PetscFree3(m1,m2,m3) PetscFreeA(3,__LINE__,PETSC_FUNCTION_NAME,__FILE__,&(m1),&(m2),&(m3)) 1232 1233 /*MC 1234 PetscFree4 - Frees 4 chunks of memory obtained with PetscMalloc4() 1235 1236 Synopsis: 1237 #include <petscsys.h> 1238 PetscErrorCode PetscFree4(void *m1,void *m2,void *m3,void *m4) 1239 1240 Not Collective 1241 1242 Input Parameters: 1243 + m1 - memory to free 1244 . m2 - 2nd memory to free 1245 . m3 - 3rd memory to free 1246 - m4 - 4th memory to free 1247 1248 Level: developer 1249 1250 Notes: Memory must have been obtained with PetscMalloc4() 1251 1252 .seealso: PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree(), PetscMalloc3(), PetscMalloc4() 1253 1254 Concepts: memory allocation 1255 1256 M*/ 1257 #define PetscFree4(m1,m2,m3,m4) PetscFreeA(4,__LINE__,PETSC_FUNCTION_NAME,__FILE__,&(m1),&(m2),&(m3),&(m4)) 1258 1259 /*MC 1260 PetscFree5 - Frees 5 chunks of memory obtained with PetscMalloc5() 1261 1262 Synopsis: 1263 #include <petscsys.h> 1264 PetscErrorCode PetscFree5(void *m1,void *m2,void *m3,void *m4,void *m5) 1265 1266 Not Collective 1267 1268 Input Parameters: 1269 + m1 - memory to free 1270 . m2 - 2nd memory to free 1271 . m3 - 3rd memory to free 1272 . m4 - 4th memory to free 1273 - m5 - 5th memory to free 1274 1275 Level: developer 1276 1277 Notes: Memory must have been obtained with PetscMalloc5() 1278 1279 .seealso: PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree(), PetscMalloc3(), PetscMalloc4(), PetscMalloc5() 1280 1281 Concepts: memory allocation 1282 1283 M*/ 1284 #define PetscFree5(m1,m2,m3,m4,m5) PetscFreeA(5,__LINE__,PETSC_FUNCTION_NAME,__FILE__,&(m1),&(m2),&(m3),&(m4),&(m5)) 1285 1286 /*MC 1287 PetscFree6 - Frees 6 chunks of memory obtained with PetscMalloc6() 1288 1289 Synopsis: 1290 #include <petscsys.h> 1291 PetscErrorCode PetscFree6(void *m1,void *m2,void *m3,void *m4,void *m5,void *m6) 1292 1293 Not Collective 1294 1295 Input Parameters: 1296 + m1 - memory to free 1297 . m2 - 2nd memory to free 1298 . m3 - 3rd memory to free 1299 . m4 - 4th memory to free 1300 . m5 - 5th memory to free 1301 - m6 - 6th memory to free 1302 1303 1304 Level: developer 1305 1306 Notes: Memory must have been obtained with PetscMalloc6() 1307 1308 .seealso: PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree(), PetscMalloc3(), PetscMalloc4(), PetscMalloc5(), PetscMalloc6() 1309 1310 Concepts: memory allocation 1311 1312 M*/ 1313 #define PetscFree6(m1,m2,m3,m4,m5,m6) PetscFreeA(6,__LINE__,PETSC_FUNCTION_NAME,__FILE__,&(m1),&(m2),&(m3),&(m4),&(m5),&(m6)) 1314 1315 /*MC 1316 PetscFree7 - Frees 7 chunks of memory obtained with PetscMalloc7() 1317 1318 Synopsis: 1319 #include <petscsys.h> 1320 PetscErrorCode PetscFree7(void *m1,void *m2,void *m3,void *m4,void *m5,void *m6,void *m7) 1321 1322 Not Collective 1323 1324 Input Parameters: 1325 + m1 - memory to free 1326 . m2 - 2nd memory to free 1327 . m3 - 3rd memory to free 1328 . m4 - 4th memory to free 1329 . m5 - 5th memory to free 1330 . m6 - 6th memory to free 1331 - m7 - 7th memory to free 1332 1333 1334 Level: developer 1335 1336 Notes: Memory must have been obtained with PetscMalloc7() 1337 1338 .seealso: PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree(), PetscMalloc3(), PetscMalloc4(), PetscMalloc5(), PetscMalloc6(), 1339 PetscMalloc7() 1340 1341 Concepts: memory allocation 1342 1343 M*/ 1344 #define PetscFree7(m1,m2,m3,m4,m5,m6,m7) PetscFreeA(7,__LINE__,PETSC_FUNCTION_NAME,__FILE__,&(m1),&(m2),&(m3),&(m4),&(m5),&(m6),&(m7)) 1345 1346 PETSC_EXTERN PetscErrorCode PetscMallocA(int,PetscBool,int,const char *,const char *,size_t,void *,...); 1347 PETSC_EXTERN PetscErrorCode PetscFreeA(int,int,const char *,const char *,void *,...); 1348 PETSC_EXTERN PetscErrorCode (*PetscTrMalloc)(size_t,int,const char[],const char[],void**); 1349 PETSC_EXTERN PetscErrorCode (*PetscTrFree)(void*,int,const char[],const char[]); 1350 PETSC_EXTERN PetscErrorCode (*PetscTrRealloc)(size_t,int,const char[],const char[],void**); 1351 PETSC_EXTERN PetscErrorCode PetscMallocSetCoalesce(PetscBool); 1352 PETSC_EXTERN PetscErrorCode PetscMallocSet(PetscErrorCode (*)(size_t,int,const char[],const char[],void**),PetscErrorCode (*)(void*,int,const char[],const char[])); 1353 PETSC_EXTERN PetscErrorCode PetscMallocClear(void); 1354 1355 /* 1356 Unlike PetscMallocSet and PetscMallocClear which overwrite the existing settings, these two functions save the previous choice of allocator, and should be used in pair. 1357 */ 1358 PETSC_EXTERN PetscErrorCode PetscMallocSetDRAM(void); 1359 PETSC_EXTERN PetscErrorCode PetscMallocResetDRAM(void); 1360 1361 /* 1362 PetscLogDouble variables are used to contain double precision numbers 1363 that are not used in the numerical computations, but rather in logging, 1364 timing etc. 1365 */ 1366 typedef double PetscLogDouble; 1367 #define MPIU_PETSCLOGDOUBLE MPI_DOUBLE 1368 1369 /* 1370 Routines for tracing memory corruption/bleeding with default PETSc memory allocation 1371 */ 1372 PETSC_EXTERN PetscErrorCode PetscMallocDump(FILE *); 1373 PETSC_EXTERN PetscErrorCode PetscMallocDumpLog(FILE *); 1374 PETSC_EXTERN PetscErrorCode PetscMallocGetCurrentUsage(PetscLogDouble *); 1375 PETSC_EXTERN PetscErrorCode PetscMallocGetMaximumUsage(PetscLogDouble *); 1376 PETSC_EXTERN PetscErrorCode PetscMallocDebug(PetscBool); 1377 PETSC_EXTERN PetscErrorCode PetscMallocGetDebug(PetscBool*); 1378 PETSC_EXTERN PetscErrorCode PetscMallocValidate(int,const char[],const char[]); 1379 PETSC_EXTERN PetscErrorCode PetscMallocSetDumpLog(void); 1380 PETSC_EXTERN PetscErrorCode PetscMallocSetDumpLogThreshold(PetscLogDouble); 1381 PETSC_EXTERN PetscErrorCode PetscMallocGetDumpLog(PetscBool*); 1382 1383 /*E 1384 PetscDataType - Used for handling different basic data types. 1385 1386 Level: beginner 1387 1388 Notes: 1389 Use of this should be avoided if one can directly use MPI_Datatype instead. 1390 1391 Developer comment: 1392 It would be nice if we could always just use MPI Datatypes, why can we not? 1393 1394 .seealso: PetscBinaryRead(), PetscBinaryWrite(), PetscDataTypeToMPIDataType(), 1395 PetscDataTypeGetSize() 1396 1397 E*/ 1398 typedef enum {PETSC_INT = 0,PETSC_DOUBLE = 1,PETSC_COMPLEX = 2, PETSC_LONG = 3 ,PETSC_SHORT = 4,PETSC_FLOAT = 5, 1399 PETSC_CHAR = 6,PETSC_BIT_LOGICAL = 7,PETSC_ENUM = 8,PETSC_BOOL=9, PETSC___FLOAT128 = 10,PETSC_OBJECT = 11, PETSC_FUNCTION = 12, PETSC_STRING = 13, PETSC___FP16 = 14,PETSC_STRUCT, PETSC_DATATYPE_UNKNOWN} PetscDataType; 1400 PETSC_EXTERN const char *const PetscDataTypes[]; 1401 1402 #if defined(PETSC_USE_COMPLEX) 1403 #define PETSC_SCALAR PETSC_COMPLEX 1404 #else 1405 #if defined(PETSC_USE_REAL_SINGLE) 1406 #define PETSC_SCALAR PETSC_FLOAT 1407 #elif defined(PETSC_USE_REAL___FLOAT128) 1408 #define PETSC_SCALAR PETSC___FLOAT128 1409 #elif defined(PETSC_USE_REAL___FP16) 1410 #define PETSC_SCALAR PETSC___FP16 1411 #else 1412 #define PETSC_SCALAR PETSC_DOUBLE 1413 #endif 1414 #endif 1415 #if defined(PETSC_USE_REAL_SINGLE) 1416 #define PETSC_REAL PETSC_FLOAT 1417 #elif defined(PETSC_USE_REAL___FLOAT128) 1418 #define PETSC_REAL PETSC___FLOAT128 1419 #elif defined(PETSC_USE_REAL___FP16) 1420 #define PETSC_REAL PETSC___FP16 1421 #else 1422 #define PETSC_REAL PETSC_DOUBLE 1423 #endif 1424 #define PETSC_FORTRANADDR PETSC_LONG 1425 1426 PETSC_EXTERN PetscErrorCode PetscDataTypeToMPIDataType(PetscDataType,MPI_Datatype*); 1427 PETSC_EXTERN PetscErrorCode PetscMPIDataTypeToPetscDataType(MPI_Datatype,PetscDataType*); 1428 PETSC_EXTERN PetscErrorCode PetscDataTypeGetSize(PetscDataType,size_t*); 1429 PETSC_EXTERN PetscErrorCode PetscDataTypeFromString(const char*,PetscDataType*,PetscBool*); 1430 1431 /* 1432 Basic memory and string operations. These are usually simple wrappers 1433 around the basic Unix system calls, but a few of them have additional 1434 functionality and/or error checking. 1435 */ 1436 PETSC_EXTERN PetscErrorCode PetscBitMemcpy(void*,PetscInt,const void*,PetscInt,PetscInt,PetscDataType); 1437 PETSC_EXTERN PetscErrorCode PetscMemmove(void*,void *,size_t); 1438 PETSC_EXTERN PetscErrorCode PetscMemcmp(const void*,const void*,size_t,PetscBool *); 1439 PETSC_EXTERN PetscErrorCode PetscStrlen(const char[],size_t*); 1440 PETSC_EXTERN PetscErrorCode PetscStrToArray(const char[],char,int*,char ***); 1441 PETSC_EXTERN PetscErrorCode PetscStrToArrayDestroy(int,char **); 1442 PETSC_EXTERN PetscErrorCode PetscStrcmp(const char[],const char[],PetscBool *); 1443 PETSC_EXTERN PetscErrorCode PetscStrgrt(const char[],const char[],PetscBool *); 1444 PETSC_EXTERN PetscErrorCode PetscStrcasecmp(const char[],const char[],PetscBool *); 1445 PETSC_EXTERN PetscErrorCode PetscStrncmp(const char[],const char[],size_t,PetscBool *); 1446 PETSC_EXTERN PetscErrorCode PetscStrcpy(char[],const char[]); 1447 PETSC_EXTERN PetscErrorCode PetscStrcat(char[],const char[]); 1448 PETSC_EXTERN PetscErrorCode PetscStrlcat(char[],const char[],size_t); 1449 PETSC_EXTERN PetscErrorCode PetscStrncpy(char[],const char[],size_t); 1450 PETSC_EXTERN PetscErrorCode PetscStrchr(const char[],char,char *[]); 1451 PETSC_EXTERN PetscErrorCode PetscStrtolower(char[]); 1452 PETSC_EXTERN PetscErrorCode PetscStrtoupper(char[]); 1453 PETSC_EXTERN PetscErrorCode PetscStrrchr(const char[],char,char *[]); 1454 PETSC_EXTERN PetscErrorCode PetscStrstr(const char[],const char[],char *[]); 1455 PETSC_EXTERN PetscErrorCode PetscStrrstr(const char[],const char[],char *[]); 1456 PETSC_EXTERN PetscErrorCode PetscStrendswith(const char[],const char[],PetscBool*); 1457 PETSC_EXTERN PetscErrorCode PetscStrbeginswith(const char[],const char[],PetscBool*); 1458 PETSC_EXTERN PetscErrorCode PetscStrendswithwhich(const char[],const char *const*,PetscInt*); 1459 PETSC_EXTERN PetscErrorCode PetscStrallocpy(const char[],char *[]); 1460 PETSC_EXTERN PetscErrorCode PetscStrArrayallocpy(const char *const*,char***); 1461 PETSC_EXTERN PetscErrorCode PetscStrArrayDestroy(char***); 1462 PETSC_EXTERN PetscErrorCode PetscStrNArrayallocpy(PetscInt,const char *const*,char***); 1463 PETSC_EXTERN PetscErrorCode PetscStrNArrayDestroy(PetscInt,char***); 1464 PETSC_EXTERN PetscErrorCode PetscStrreplace(MPI_Comm,const char[],char[],size_t); 1465 1466 PETSC_EXTERN void PetscStrcmpNoError(const char[],const char[],PetscBool *); 1467 1468 /*S 1469 PetscToken - 'Token' used for managing tokenizing strings 1470 1471 Level: intermediate 1472 1473 .seealso: PetscTokenCreate(), PetscTokenFind(), PetscTokenDestroy() 1474 S*/ 1475 typedef struct _p_PetscToken* PetscToken; 1476 1477 PETSC_EXTERN PetscErrorCode PetscTokenCreate(const char[],const char,PetscToken*); 1478 PETSC_EXTERN PetscErrorCode PetscTokenFind(PetscToken,char *[]); 1479 PETSC_EXTERN PetscErrorCode PetscTokenDestroy(PetscToken*); 1480 PETSC_EXTERN PetscErrorCode PetscStrInList(const char[],const char[],char,PetscBool*); 1481 1482 PETSC_EXTERN PetscErrorCode PetscEListFind(PetscInt,const char *const*,const char*,PetscInt*,PetscBool*); 1483 PETSC_EXTERN PetscErrorCode PetscEnumFind(const char *const*,const char*,PetscEnum*,PetscBool*); 1484 1485 /* 1486 These are MPI operations for MPI_Allreduce() etc 1487 */ 1488 PETSC_EXTERN MPI_Op MPIU_MAXSUM_OP; 1489 #if (defined(PETSC_HAVE_COMPLEX) && !defined(PETSC_HAVE_MPI_C_DOUBLE_COMPLEX)) || defined(PETSC_USE_REAL___FLOAT128) || defined(PETSC_USE_REAL___FP16) 1490 PETSC_EXTERN MPI_Op MPIU_SUM; 1491 #else 1492 #define MPIU_SUM MPI_SUM 1493 #endif 1494 #if defined(PETSC_USE_REAL___FLOAT128) || defined(PETSC_USE_REAL___FP16) 1495 PETSC_EXTERN MPI_Op MPIU_MAX; 1496 PETSC_EXTERN MPI_Op MPIU_MIN; 1497 #else 1498 #define MPIU_MAX MPI_MAX 1499 #define MPIU_MIN MPI_MIN 1500 #endif 1501 PETSC_EXTERN PetscErrorCode PetscMaxSum(MPI_Comm,const PetscInt[],PetscInt*,PetscInt*); 1502 1503 PETSC_EXTERN PetscErrorCode MPIULong_Send(void*,PetscInt,MPI_Datatype,PetscMPIInt,PetscMPIInt,MPI_Comm); 1504 PETSC_EXTERN PetscErrorCode MPIULong_Recv(void*,PetscInt,MPI_Datatype,PetscMPIInt,PetscMPIInt,MPI_Comm); 1505 1506 /*S 1507 PetscObject - any PETSc object, PetscViewer, Mat, Vec, KSP etc 1508 1509 Level: beginner 1510 1511 Note: 1512 This is the base class from which all PETSc objects are derived from. 1513 1514 .seealso: PetscObjectDestroy(), PetscObjectView(), PetscObjectGetName(), PetscObjectSetName(), PetscObjectReference(), PetscObjectDereference() 1515 S*/ 1516 typedef struct _p_PetscObject* PetscObject; 1517 1518 /*MC 1519 PetscObjectId - unique integer Id for a PetscObject 1520 1521 Level: developer 1522 1523 Notes: 1524 Unlike pointer values, object ids are never reused. 1525 1526 .seealso: PetscObjectState, PetscObjectGetId() 1527 M*/ 1528 #if defined(PETSC_USING_F90) && !defined(PETSC_USE_FORTRANKIND) /* compaq F90 */ 1529 typedef int PetscObjectId; 1530 #else 1531 typedef PetscInt64 PetscObjectId; 1532 #endif 1533 1534 /*MC 1535 PetscObjectState - integer state for a PetscObject 1536 1537 Level: developer 1538 1539 Notes: 1540 Object state is always-increasing and (for objects that track state) can be used to determine if an object has 1541 changed since the last time you interacted with it. It is 64-bit so that it will not overflow for a very long time. 1542 1543 .seealso: PetscObjectId, PetscObjectStateGet(), PetscObjectStateIncrease(), PetscObjectStateSet() 1544 M*/ 1545 #if defined(PETSC_USING_F90) && !defined(PETSC_USE_FORTRANKIND) /* compaq F90 */ 1546 typedef int PetscObjectState; 1547 #else 1548 typedef PetscInt64 PetscObjectState; 1549 #endif 1550 1551 /*S 1552 PetscFunctionList - Linked list of functions, possibly stored in dynamic libraries, accessed 1553 by string name 1554 1555 Level: advanced 1556 1557 .seealso: PetscFunctionListAdd(), PetscFunctionListDestroy(), PetscOpFlist 1558 S*/ 1559 typedef struct _n_PetscFunctionList *PetscFunctionList; 1560 1561 /*E 1562 PetscFileMode - Access mode for a file. 1563 1564 Level: beginner 1565 1566 $ FILE_MODE_READ - open a file at its beginning for reading 1567 $ FILE_MODE_WRITE - open a file at its beginning for writing (will create if the file does not exist) 1568 $ FILE_MODE_APPEND - open a file at end for writing 1569 $ FILE_MODE_UPDATE - open a file for updating, meaning for reading and writing 1570 $ FILE_MODE_APPEND_UPDATE - open a file for updating, meaning for reading and writing, at the end 1571 1572 .seealso: PetscViewerFileSetMode() 1573 E*/ 1574 typedef enum {FILE_MODE_READ, FILE_MODE_WRITE, FILE_MODE_APPEND, FILE_MODE_UPDATE, FILE_MODE_APPEND_UPDATE} PetscFileMode; 1575 extern const char *const PetscFileModes[]; 1576 1577 /* 1578 Defines PETSc error handling. 1579 */ 1580 #include <petscerror.h> 1581 1582 #define PETSC_SMALLEST_CLASSID 1211211 1583 PETSC_EXTERN PetscClassId PETSC_LARGEST_CLASSID; 1584 PETSC_EXTERN PetscClassId PETSC_OBJECT_CLASSID; 1585 PETSC_EXTERN PetscErrorCode PetscClassIdRegister(const char[],PetscClassId *); 1586 1587 /* 1588 Routines that get memory usage information from the OS 1589 */ 1590 PETSC_EXTERN PetscErrorCode PetscMemoryGetCurrentUsage(PetscLogDouble *); 1591 PETSC_EXTERN PetscErrorCode PetscMemoryGetMaximumUsage(PetscLogDouble *); 1592 PETSC_EXTERN PetscErrorCode PetscMemorySetGetMaximumUsage(void); 1593 PETSC_EXTERN PetscErrorCode PetscMemoryTrace(const char[]); 1594 1595 PETSC_EXTERN PetscErrorCode PetscInfoAllow(PetscBool ,const char []); 1596 PETSC_EXTERN PetscErrorCode PetscSleep(PetscReal); 1597 1598 /* 1599 Initialization of PETSc 1600 */ 1601 PETSC_EXTERN PetscErrorCode PetscInitialize(int*,char***,const char[],const char[]); 1602 PETSC_EXTERN PetscErrorCode PetscInitializeNoPointers(int,char**,const char[],const char[]); 1603 PETSC_EXTERN PetscErrorCode PetscInitializeNoArguments(void); 1604 PETSC_EXTERN PetscErrorCode PetscInitialized(PetscBool *); 1605 PETSC_EXTERN PetscErrorCode PetscFinalized(PetscBool *); 1606 PETSC_EXTERN PetscErrorCode PetscFinalize(void); 1607 PETSC_EXTERN PetscErrorCode PetscInitializeFortran(void); 1608 PETSC_EXTERN PetscErrorCode PetscGetArgs(int*,char ***); 1609 PETSC_EXTERN PetscErrorCode PetscGetArguments(char ***); 1610 PETSC_EXTERN PetscErrorCode PetscFreeArguments(char **); 1611 1612 PETSC_EXTERN PetscErrorCode PetscEnd(void); 1613 PETSC_EXTERN PetscErrorCode PetscSysInitializePackage(void); 1614 1615 PETSC_EXTERN PetscErrorCode PetscPythonInitialize(const char[],const char[]); 1616 PETSC_EXTERN PetscErrorCode PetscPythonFinalize(void); 1617 PETSC_EXTERN PetscErrorCode PetscPythonPrintError(void); 1618 PETSC_EXTERN PetscErrorCode PetscPythonMonitorSet(PetscObject,const char[]); 1619 1620 /* 1621 These are so that in extern C code we can caste function pointers to non-extern C 1622 function pointers. Since the regular C++ code expects its function pointers to be C++ 1623 */ 1624 PETSC_EXTERN_TYPEDEF typedef void (**PetscVoidStarFunction)(void); 1625 PETSC_EXTERN_TYPEDEF typedef void (*PetscVoidFunction)(void); 1626 PETSC_EXTERN_TYPEDEF typedef PetscErrorCode (*PetscErrorCodeFunction)(void); 1627 1628 /* 1629 Functions that can act on any PETSc object. 1630 */ 1631 PETSC_EXTERN PetscErrorCode PetscObjectDestroy(PetscObject*); 1632 PETSC_EXTERN PetscErrorCode PetscObjectGetComm(PetscObject,MPI_Comm *); 1633 PETSC_EXTERN PetscErrorCode PetscObjectGetClassId(PetscObject,PetscClassId *); 1634 PETSC_EXTERN PetscErrorCode PetscObjectGetClassName(PetscObject,const char *[]); 1635 PETSC_EXTERN PetscErrorCode PetscObjectSetType(PetscObject,const char []); 1636 PETSC_EXTERN PetscErrorCode PetscObjectGetType(PetscObject,const char *[]); 1637 PETSC_EXTERN PetscErrorCode PetscObjectSetName(PetscObject,const char[]); 1638 PETSC_EXTERN PetscErrorCode PetscObjectGetName(PetscObject,const char*[]); 1639 PETSC_EXTERN PetscErrorCode PetscObjectSetTabLevel(PetscObject,PetscInt); 1640 PETSC_EXTERN PetscErrorCode PetscObjectGetTabLevel(PetscObject,PetscInt*); 1641 PETSC_EXTERN PetscErrorCode PetscObjectIncrementTabLevel(PetscObject,PetscObject,PetscInt); 1642 PETSC_EXTERN PetscErrorCode PetscObjectReference(PetscObject); 1643 PETSC_EXTERN PetscErrorCode PetscObjectGetReference(PetscObject,PetscInt*); 1644 PETSC_EXTERN PetscErrorCode PetscObjectDereference(PetscObject); 1645 PETSC_EXTERN PetscErrorCode PetscObjectGetNewTag(PetscObject,PetscMPIInt *); 1646 PETSC_EXTERN PetscErrorCode PetscObjectCompose(PetscObject,const char[],PetscObject); 1647 PETSC_EXTERN PetscErrorCode PetscObjectRemoveReference(PetscObject,const char[]); 1648 PETSC_EXTERN PetscErrorCode PetscObjectQuery(PetscObject,const char[],PetscObject *); 1649 PETSC_EXTERN PetscErrorCode PetscObjectComposeFunction_Private(PetscObject,const char[],void (*)(void)); 1650 #define PetscObjectComposeFunction(a,b,d) PetscObjectComposeFunction_Private(a,b,(PetscVoidFunction)(d)) 1651 PETSC_EXTERN PetscErrorCode PetscObjectSetFromOptions(PetscObject); 1652 PETSC_EXTERN PetscErrorCode PetscObjectSetUp(PetscObject); 1653 PETSC_EXTERN PetscErrorCode PetscObjectSetPrintedOptions(PetscObject); 1654 PETSC_EXTERN PetscErrorCode PetscObjectInheritPrintedOptions(PetscObject,PetscObject); 1655 PETSC_EXTERN PetscErrorCode PetscCommGetNewTag(MPI_Comm,PetscMPIInt *); 1656 1657 #include <petscviewertypes.h> 1658 #include <petscoptions.h> 1659 1660 PETSC_EXTERN PetscErrorCode PetscObjectsListGetGlobalNumbering(MPI_Comm,PetscInt,PetscObject*,PetscInt*,PetscInt*); 1661 1662 PETSC_EXTERN PetscErrorCode PetscMemoryShowUsage(PetscViewer,const char[]); 1663 PETSC_EXTERN PetscErrorCode PetscMemoryView(PetscViewer,const char[]); 1664 PETSC_EXTERN PetscErrorCode PetscObjectPrintClassNamePrefixType(PetscObject,PetscViewer); 1665 PETSC_EXTERN PetscErrorCode PetscObjectView(PetscObject,PetscViewer); 1666 #define PetscObjectQueryFunction(obj,name,fptr) PetscObjectQueryFunction_Private((obj),(name),(PetscVoidFunction*)(fptr)) 1667 PETSC_EXTERN PetscErrorCode PetscObjectQueryFunction_Private(PetscObject,const char[],void (**)(void)); 1668 PETSC_EXTERN PetscErrorCode PetscObjectSetOptionsPrefix(PetscObject,const char[]); 1669 PETSC_EXTERN PetscErrorCode PetscObjectAppendOptionsPrefix(PetscObject,const char[]); 1670 PETSC_EXTERN PetscErrorCode PetscObjectPrependOptionsPrefix(PetscObject,const char[]); 1671 PETSC_EXTERN PetscErrorCode PetscObjectGetOptionsPrefix(PetscObject,const char*[]); 1672 PETSC_EXTERN PetscErrorCode PetscObjectChangeTypeName(PetscObject,const char[]); 1673 PETSC_EXTERN PetscErrorCode PetscObjectRegisterDestroy(PetscObject); 1674 PETSC_EXTERN PetscErrorCode PetscObjectRegisterDestroyAll(void); 1675 PETSC_EXTERN PetscErrorCode PetscObjectViewFromOptions(PetscObject,PetscObject,const char[]); 1676 PETSC_EXTERN PetscErrorCode PetscObjectName(PetscObject); 1677 PETSC_EXTERN PetscErrorCode PetscObjectTypeCompare(PetscObject,const char[],PetscBool *); 1678 PETSC_EXTERN PetscErrorCode PetscObjectBaseTypeCompare(PetscObject,const char[],PetscBool *); 1679 PETSC_EXTERN PetscErrorCode PetscObjectTypeCompareAny(PetscObject,PetscBool*,const char[],...); 1680 PETSC_EXTERN PetscErrorCode PetscRegisterFinalize(PetscErrorCode (*)(void)); 1681 PETSC_EXTERN PetscErrorCode PetscRegisterFinalizeAll(void); 1682 1683 #if defined(PETSC_HAVE_SAWS) 1684 PETSC_EXTERN PetscErrorCode PetscSAWsBlock(void); 1685 PETSC_EXTERN PetscErrorCode PetscObjectSAWsViewOff(PetscObject); 1686 PETSC_EXTERN PetscErrorCode PetscObjectSAWsSetBlock(PetscObject,PetscBool); 1687 PETSC_EXTERN PetscErrorCode PetscObjectSAWsBlock(PetscObject); 1688 PETSC_EXTERN PetscErrorCode PetscObjectSAWsGrantAccess(PetscObject); 1689 PETSC_EXTERN PetscErrorCode PetscObjectSAWsTakeAccess(PetscObject); 1690 PETSC_EXTERN void PetscStackSAWsGrantAccess(void); 1691 PETSC_EXTERN void PetscStackSAWsTakeAccess(void); 1692 PETSC_EXTERN PetscErrorCode PetscStackViewSAWs(void); 1693 PETSC_EXTERN PetscErrorCode PetscStackSAWsViewOff(void); 1694 1695 #else 1696 #define PetscSAWsBlock() 0 1697 #define PetscObjectSAWsViewOff(obj) 0 1698 #define PetscObjectSAWsSetBlock(obj,flg) 0 1699 #define PetscObjectSAWsBlock(obj) 0 1700 #define PetscObjectSAWsGrantAccess(obj) 0 1701 #define PetscObjectSAWsTakeAccess(obj) 0 1702 #define PetscStackViewSAWs() 0 1703 #define PetscStackSAWsViewOff() 0 1704 #define PetscStackSAWsTakeAccess() 1705 #define PetscStackSAWsGrantAccess() 1706 1707 #endif 1708 1709 typedef void* PetscDLHandle; 1710 typedef enum {PETSC_DL_DECIDE=0,PETSC_DL_NOW=1,PETSC_DL_LOCAL=2} PetscDLMode; 1711 PETSC_EXTERN PetscErrorCode PetscDLOpen(const char[],PetscDLMode,PetscDLHandle *); 1712 PETSC_EXTERN PetscErrorCode PetscDLClose(PetscDLHandle *); 1713 PETSC_EXTERN PetscErrorCode PetscDLSym(PetscDLHandle,const char[],void **); 1714 1715 #if defined(PETSC_USE_DEBUG) 1716 PETSC_EXTERN PetscErrorCode PetscMallocGetStack(void*,PetscStack**); 1717 #endif 1718 PETSC_EXTERN PetscErrorCode PetscObjectsDump(FILE*,PetscBool); 1719 1720 /*S 1721 PetscObjectList - Linked list of PETSc objects, each accessable by string name 1722 1723 Level: developer 1724 1725 Notes: 1726 Used by PetscObjectCompose() and PetscObjectQuery() 1727 1728 .seealso: PetscObjectListAdd(), PetscObjectListDestroy(), PetscObjectListFind(), PetscObjectCompose(), PetscObjectQuery(), PetscFunctionList 1729 S*/ 1730 typedef struct _n_PetscObjectList *PetscObjectList; 1731 1732 PETSC_EXTERN PetscErrorCode PetscObjectListDestroy(PetscObjectList*); 1733 PETSC_EXTERN PetscErrorCode PetscObjectListFind(PetscObjectList,const char[],PetscObject*); 1734 PETSC_EXTERN PetscErrorCode PetscObjectListReverseFind(PetscObjectList,PetscObject,char**,PetscBool*); 1735 PETSC_EXTERN PetscErrorCode PetscObjectListAdd(PetscObjectList *,const char[],PetscObject); 1736 PETSC_EXTERN PetscErrorCode PetscObjectListRemoveReference(PetscObjectList *,const char[]); 1737 PETSC_EXTERN PetscErrorCode PetscObjectListDuplicate(PetscObjectList,PetscObjectList *); 1738 1739 /* 1740 Dynamic library lists. Lists of names of routines in objects or in dynamic 1741 link libraries that will be loaded as needed. 1742 */ 1743 1744 #define PetscFunctionListAdd(list,name,fptr) PetscFunctionListAdd_Private((list),(name),(PetscVoidFunction)(fptr)) 1745 PETSC_EXTERN PetscErrorCode PetscFunctionListAdd_Private(PetscFunctionList*,const char[],void (*)(void)); 1746 PETSC_EXTERN PetscErrorCode PetscFunctionListDestroy(PetscFunctionList*); 1747 #define PetscFunctionListFind(list,name,fptr) PetscFunctionListFind_Private((list),(name),(PetscVoidFunction*)(fptr)) 1748 PETSC_EXTERN PetscErrorCode PetscFunctionListFind_Private(PetscFunctionList,const char[],void (**)(void)); 1749 PETSC_EXTERN PetscErrorCode PetscFunctionListPrintTypes(MPI_Comm,FILE*,const char[],const char[],const char[],const char[],PetscFunctionList,const char[]); 1750 PETSC_EXTERN PetscErrorCode PetscFunctionListDuplicate(PetscFunctionList,PetscFunctionList *); 1751 PETSC_EXTERN PetscErrorCode PetscFunctionListView(PetscFunctionList,PetscViewer); 1752 PETSC_EXTERN PetscErrorCode PetscFunctionListGet(PetscFunctionList,const char ***,int*); 1753 1754 /*S 1755 PetscDLLibrary - Linked list of dynamics libraries to search for functions 1756 1757 Level: advanced 1758 1759 .seealso: PetscDLLibraryOpen() 1760 S*/ 1761 typedef struct _n_PetscDLLibrary *PetscDLLibrary; 1762 PETSC_EXTERN PetscDLLibrary PetscDLLibrariesLoaded; 1763 PETSC_EXTERN PetscErrorCode PetscDLLibraryAppend(MPI_Comm,PetscDLLibrary *,const char[]); 1764 PETSC_EXTERN PetscErrorCode PetscDLLibraryPrepend(MPI_Comm,PetscDLLibrary *,const char[]); 1765 PETSC_EXTERN PetscErrorCode PetscDLLibrarySym(MPI_Comm,PetscDLLibrary *,const char[],const char[],void **); 1766 PETSC_EXTERN PetscErrorCode PetscDLLibraryPrintPath(PetscDLLibrary); 1767 PETSC_EXTERN PetscErrorCode PetscDLLibraryRetrieve(MPI_Comm,const char[],char *,size_t,PetscBool *); 1768 PETSC_EXTERN PetscErrorCode PetscDLLibraryOpen(MPI_Comm,const char[],PetscDLLibrary *); 1769 PETSC_EXTERN PetscErrorCode PetscDLLibraryClose(PetscDLLibrary); 1770 1771 /* 1772 Useful utility routines 1773 */ 1774 PETSC_EXTERN PetscErrorCode PetscSplitOwnership(MPI_Comm,PetscInt*,PetscInt*); 1775 PETSC_EXTERN PetscErrorCode PetscSplitOwnershipBlock(MPI_Comm,PetscInt,PetscInt*,PetscInt*); 1776 PETSC_EXTERN PetscErrorCode PetscSequentialPhaseBegin(MPI_Comm,PetscMPIInt); 1777 PETSC_EXTERN PetscErrorCode PetscSequentialPhaseEnd(MPI_Comm,PetscMPIInt); 1778 PETSC_EXTERN PetscErrorCode PetscBarrier(PetscObject); 1779 PETSC_EXTERN PetscErrorCode PetscMPIDump(FILE*); 1780 PETSC_EXTERN PetscErrorCode PetscGlobalMinMaxInt(MPI_Comm,PetscInt[],PetscInt[]); 1781 PETSC_EXTERN PetscErrorCode PetscGlobalMinMaxReal(MPI_Comm,PetscReal[],PetscReal[]); 1782 1783 /* 1784 PetscNot - negates a logical type value and returns result as a PetscBool 1785 1786 Notes: 1787 This is useful in cases like 1788 $ int *a; 1789 $ PetscBool flag = PetscNot(a) 1790 where !a would not return a PetscBool because we cannot provide a cast from int to PetscBool in C. 1791 */ 1792 #define PetscNot(a) ((a) ? PETSC_FALSE : PETSC_TRUE) 1793 1794 /*MC 1795 PetscHelpPrintf - Prints help messages. 1796 1797 Synopsis: 1798 #include <petscsys.h> 1799 PetscErrorCode (*PetscHelpPrintf)(const char format[],...); 1800 1801 Not Collective 1802 1803 Input Parameters: 1804 . format - the usual printf() format string 1805 1806 Level: developer 1807 1808 Fortran Note: 1809 This routine is not supported in Fortran. 1810 1811 Concepts: help messages^printing 1812 Concepts: printing^help messages 1813 1814 .seealso: PetscFPrintf(), PetscSynchronizedPrintf(), PetscErrorPrintf() 1815 M*/ 1816 PETSC_EXTERN PetscErrorCode (*PetscHelpPrintf)(MPI_Comm,const char[],...); 1817 1818 /* 1819 Defines PETSc profiling. 1820 */ 1821 #include <petsclog.h> 1822 1823 /* 1824 Simple PETSc parallel IO for ASCII printing 1825 */ 1826 PETSC_EXTERN PetscErrorCode PetscFixFilename(const char[],char[]); 1827 PETSC_EXTERN PetscErrorCode PetscFOpen(MPI_Comm,const char[],const char[],FILE**); 1828 PETSC_EXTERN PetscErrorCode PetscFClose(MPI_Comm,FILE*); 1829 PETSC_EXTERN PetscErrorCode PetscFPrintf(MPI_Comm,FILE*,const char[],...); 1830 PETSC_EXTERN PetscErrorCode PetscPrintf(MPI_Comm,const char[],...); 1831 PETSC_EXTERN PetscErrorCode PetscSNPrintf(char*,size_t,const char [],...); 1832 PETSC_EXTERN PetscErrorCode PetscSNPrintfCount(char*,size_t,const char [],size_t*,...); 1833 1834 PETSC_EXTERN PetscErrorCode PetscErrorPrintfDefault(const char [],...); 1835 PETSC_EXTERN PetscErrorCode PetscErrorPrintfNone(const char [],...); 1836 PETSC_EXTERN PetscErrorCode PetscHelpPrintfDefault(MPI_Comm,const char [],...); 1837 1838 PETSC_EXTERN PetscErrorCode PetscFormatConvertGetSize(const char*,size_t*); 1839 PETSC_EXTERN PetscErrorCode PetscFormatConvert(const char*,char *); 1840 1841 #if defined(PETSC_HAVE_POPEN) 1842 PETSC_EXTERN PetscErrorCode PetscPOpen(MPI_Comm,const char[],const char[],const char[],FILE **); 1843 PETSC_EXTERN PetscErrorCode PetscPClose(MPI_Comm,FILE*); 1844 PETSC_EXTERN PetscErrorCode PetscPOpenSetMachine(const char[]); 1845 #endif 1846 1847 PETSC_EXTERN PetscErrorCode PetscSynchronizedPrintf(MPI_Comm,const char[],...); 1848 PETSC_EXTERN PetscErrorCode PetscSynchronizedFPrintf(MPI_Comm,FILE*,const char[],...); 1849 PETSC_EXTERN PetscErrorCode PetscSynchronizedFlush(MPI_Comm,FILE*); 1850 PETSC_EXTERN PetscErrorCode PetscSynchronizedFGets(MPI_Comm,FILE*,size_t,char[]); 1851 PETSC_EXTERN PetscErrorCode PetscStartMatlab(MPI_Comm,const char[],const char[],FILE**); 1852 PETSC_EXTERN PetscErrorCode PetscStartJava(MPI_Comm,const char[],const char[],FILE**); 1853 PETSC_EXTERN PetscErrorCode PetscGetPetscDir(const char*[]); 1854 1855 /*S 1856 PetscContainer - Simple PETSc object that contains a pointer to any required data 1857 1858 Level: advanced 1859 1860 .seealso: PetscObject, PetscContainerCreate() 1861 S*/ 1862 PETSC_EXTERN PetscClassId PETSC_CONTAINER_CLASSID; 1863 typedef struct _p_PetscContainer* PetscContainer; 1864 PETSC_EXTERN PetscErrorCode PetscContainerGetPointer(PetscContainer,void **); 1865 PETSC_EXTERN PetscErrorCode PetscContainerSetPointer(PetscContainer,void *); 1866 PETSC_EXTERN PetscErrorCode PetscContainerDestroy(PetscContainer*); 1867 PETSC_EXTERN PetscErrorCode PetscContainerCreate(MPI_Comm,PetscContainer *); 1868 PETSC_EXTERN PetscErrorCode PetscContainerSetUserDestroy(PetscContainer, PetscErrorCode (*)(void*)); 1869 PETSC_EXTERN PetscErrorCode PetscContainerUserDestroyDefault(void*); 1870 1871 /* 1872 For use in debuggers 1873 */ 1874 PETSC_EXTERN PetscMPIInt PetscGlobalRank; 1875 PETSC_EXTERN PetscMPIInt PetscGlobalSize; 1876 PETSC_EXTERN PetscErrorCode PetscIntView(PetscInt,const PetscInt[],PetscViewer); 1877 PETSC_EXTERN PetscErrorCode PetscRealView(PetscInt,const PetscReal[],PetscViewer); 1878 PETSC_EXTERN PetscErrorCode PetscScalarView(PetscInt,const PetscScalar[],PetscViewer); 1879 1880 #include <stddef.h> 1881 #include <string.h> /* for memcpy, memset */ 1882 #if defined(PETSC_HAVE_STDLIB_H) 1883 #include <stdlib.h> 1884 #endif 1885 1886 #if defined(PETSC_HAVE_XMMINTRIN_H) && !defined(__CUDACC__) 1887 #include <xmmintrin.h> 1888 #endif 1889 1890 /*@C 1891 PetscMemcpy - Copies n bytes, beginning at location b, to the space 1892 beginning at location a. The two memory regions CANNOT overlap, use 1893 PetscMemmove() in that case. 1894 1895 Not Collective 1896 1897 Input Parameters: 1898 + b - pointer to initial memory space 1899 - n - length (in bytes) of space to copy 1900 1901 Output Parameter: 1902 . a - pointer to copy space 1903 1904 Level: intermediate 1905 1906 Compile Option: 1907 PETSC_PREFER_DCOPY_FOR_MEMCPY will cause the BLAS dcopy() routine to be used 1908 for memory copies on double precision values. 1909 PETSC_PREFER_COPY_FOR_MEMCPY will cause C code to be used 1910 for memory copies on double precision values. 1911 PETSC_PREFER_FORTRAN_FORMEMCPY will cause Fortran code to be used 1912 for memory copies on double precision values. 1913 1914 Note: 1915 This routine is analogous to memcpy(). 1916 1917 Not available from Fortran 1918 1919 Developer Note: this is inlined for fastest performance 1920 1921 Concepts: memory^copying 1922 Concepts: copying^memory 1923 1924 .seealso: PetscMemmove(), PetscStrallocpy() 1925 1926 @*/ 1927 PETSC_STATIC_INLINE PetscErrorCode PetscMemcpy(void *a,const void *b,size_t n) 1928 { 1929 #if defined(PETSC_USE_DEBUG) 1930 size_t al = (size_t) a,bl = (size_t) b; 1931 size_t nl = (size_t) n; 1932 PetscFunctionBegin; 1933 if (n > 0 && !b) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_NULL,"Trying to copy from a null pointer"); 1934 if (n > 0 && !a) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_NULL,"Trying to copy to a null pointer"); 1935 #else 1936 PetscFunctionBegin; 1937 #endif 1938 if (a != b && n > 0) { 1939 #if defined(PETSC_USE_DEBUG) 1940 if ((al > bl && (al - bl) < nl) || (bl - al) < nl) SETERRQ3(PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"Memory regions overlap: either use PetscMemmov()\n\ 1941 or make sure your copy regions and lengths are correct. \n\ 1942 Length (bytes) %ld first address %ld second address %ld",nl,al,bl); 1943 #endif 1944 #if (defined(PETSC_PREFER_DCOPY_FOR_MEMCPY) || defined(PETSC_PREFER_COPY_FOR_MEMCPY) || defined(PETSC_PREFER_FORTRAN_FORMEMCPY)) 1945 if (!(a % sizeof(PetscScalar)) && !(n % sizeof(PetscScalar))) { 1946 size_t len = n/sizeof(PetscScalar); 1947 #if defined(PETSC_PREFER_DCOPY_FOR_MEMCPY) 1948 PetscBLASInt one = 1,blen; 1949 PetscErrorCode ierr; 1950 ierr = PetscBLASIntCast(len,&blen);CHKERRQ(ierr); 1951 PetscStackCallBLAS("BLAScopy",BLAScopy_(&blen,(PetscScalar *)b,&one,(PetscScalar *)a,&one)); 1952 #elif defined(PETSC_PREFER_FORTRAN_FORMEMCPY) 1953 fortrancopy_(&len,(PetscScalar*)b,(PetscScalar*)a); 1954 #else 1955 size_t i; 1956 PetscScalar *x = (PetscScalar*)b, *y = (PetscScalar*)a; 1957 for (i=0; i<len; i++) y[i] = x[i]; 1958 #endif 1959 } else { 1960 memcpy((char*)(a),(char*)(b),n); 1961 } 1962 #else 1963 memcpy((char*)(a),(char*)(b),n); 1964 #endif 1965 } 1966 PetscFunctionReturn(0); 1967 } 1968 1969 /*@C 1970 PetscMemzero - Zeros the specified memory. 1971 1972 Not Collective 1973 1974 Input Parameters: 1975 + a - pointer to beginning memory location 1976 - n - length (in bytes) of memory to initialize 1977 1978 Level: intermediate 1979 1980 Compile Option: 1981 PETSC_PREFER_BZERO - on certain machines (the IBM RS6000) the bzero() routine happens 1982 to be faster than the memset() routine. This flag causes the bzero() routine to be used. 1983 1984 Not available from Fortran 1985 1986 Developer Note: this is inlined for fastest performance 1987 1988 Concepts: memory^zeroing 1989 Concepts: zeroing^memory 1990 1991 .seealso: PetscMemcpy() 1992 @*/ 1993 PETSC_STATIC_INLINE PetscErrorCode PetscMemzero(void *a,size_t n) 1994 { 1995 if (n > 0) { 1996 #if defined(PETSC_USE_DEBUG) 1997 if (!a) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_NULL,"Trying to zero at a null pointer"); 1998 #endif 1999 #if defined(PETSC_PREFER_ZERO_FOR_MEMZERO) 2000 if (!(((long) a) % sizeof(PetscScalar)) && !(n % sizeof(PetscScalar))) { 2001 size_t i,len = n/sizeof(PetscScalar); 2002 PetscScalar *x = (PetscScalar*)a; 2003 for (i=0; i<len; i++) x[i] = 0.0; 2004 } else { 2005 #elif defined(PETSC_PREFER_FORTRAN_FOR_MEMZERO) 2006 if (!(((long) a) % sizeof(PetscScalar)) && !(n % sizeof(PetscScalar))) { 2007 PetscInt len = n/sizeof(PetscScalar); 2008 fortranzero_(&len,(PetscScalar*)a); 2009 } else { 2010 #endif 2011 #if defined(PETSC_PREFER_BZERO) 2012 bzero((char *)a,n); 2013 #else 2014 memset((char*)a,0,n); 2015 #endif 2016 #if defined(PETSC_PREFER_ZERO_FOR_MEMZERO) || defined(PETSC_PREFER_FORTRAN_FOR_MEMZERO) 2017 } 2018 #endif 2019 } 2020 return 0; 2021 } 2022 2023 /*MC 2024 PetscPrefetchBlock - Prefetches a block of memory 2025 2026 Synopsis: 2027 #include <petscsys.h> 2028 void PetscPrefetchBlock(const anytype *a,size_t n,int rw,int t) 2029 2030 Not Collective 2031 2032 Input Parameters: 2033 + a - pointer to first element to fetch (any type but usually PetscInt or PetscScalar) 2034 . n - number of elements to fetch 2035 . rw - 1 if the memory will be written to, otherwise 0 (ignored by many processors) 2036 - t - temporal locality (PETSC_PREFETCH_HINT_{NTA,T0,T1,T2}), see note 2037 2038 Level: developer 2039 2040 Notes: 2041 The last two arguments (rw and t) must be compile-time constants. 2042 2043 Adopting Intel's x86/x86-64 conventions, there are four levels of temporal locality. Not all architectures offer 2044 equivalent locality hints, but the following macros are always defined to their closest analogue. 2045 + PETSC_PREFETCH_HINT_NTA - Non-temporal. Prefetches directly to L1, evicts to memory (skips higher level cache unless it was already there when prefetched). 2046 . PETSC_PREFETCH_HINT_T0 - Fetch to all levels of cache and evict to the closest level. Use this when the memory will be reused regularly despite necessary eviction from L1. 2047 . PETSC_PREFETCH_HINT_T1 - Fetch to level 2 and higher (not L1). 2048 - PETSC_PREFETCH_HINT_T2 - Fetch to high-level cache only. (On many systems, T0 and T1 are equivalent.) 2049 2050 This function does nothing on architectures that do not support prefetch and never errors (even if passed an invalid 2051 address). 2052 2053 Concepts: memory 2054 M*/ 2055 #define PetscPrefetchBlock(a,n,rw,t) do { \ 2056 const char *_p = (const char*)(a),*_end = (const char*)((a)+(n)); \ 2057 for ( ; _p < _end; _p += PETSC_LEVEL1_DCACHE_LINESIZE) PETSC_Prefetch(_p,(rw),(t)); \ 2058 } while (0) 2059 2060 /* 2061 Determine if some of the kernel computation routines use 2062 Fortran (rather than C) for the numerical calculations. On some machines 2063 and compilers (like complex numbers) the Fortran version of the routines 2064 is faster than the C/C++ versions. The flag --with-fortran-kernels 2065 should be used with ./configure to turn these on. 2066 */ 2067 #if defined(PETSC_USE_FORTRAN_KERNELS) 2068 2069 #if !defined(PETSC_USE_FORTRAN_KERNEL_MULTCRL) 2070 #define PETSC_USE_FORTRAN_KERNEL_MULTCRL 2071 #endif 2072 2073 #if !defined(PETSC_USE_FORTRAN_KERNEL_MULTAIJPERM) 2074 #define PETSC_USE_FORTRAN_KERNEL_MULTAIJPERM 2075 #endif 2076 2077 #if !defined(PETSC_USE_FORTRAN_KERNEL_MULTAIJ) 2078 #define PETSC_USE_FORTRAN_KERNEL_MULTAIJ 2079 #endif 2080 2081 #if !defined(PETSC_USE_FORTRAN_KERNEL_MULTTRANSPOSEAIJ) 2082 #define PETSC_USE_FORTRAN_KERNEL_MULTTRANSPOSEAIJ 2083 #endif 2084 2085 #if !defined(PETSC_USE_FORTRAN_KERNEL_NORM) 2086 #define PETSC_USE_FORTRAN_KERNEL_NORM 2087 #endif 2088 2089 #if !defined(PETSC_USE_FORTRAN_KERNEL_MAXPY) 2090 #define PETSC_USE_FORTRAN_KERNEL_MAXPY 2091 #endif 2092 2093 #if !defined(PETSC_USE_FORTRAN_KERNEL_SOLVEAIJ) 2094 #define PETSC_USE_FORTRAN_KERNEL_SOLVEAIJ 2095 #endif 2096 2097 #if !defined(PETSC_USE_FORTRAN_KERNEL_RELAXAIJ) 2098 #define PETSC_USE_FORTRAN_KERNEL_RELAXAIJ 2099 #endif 2100 2101 #if !defined(PETSC_USE_FORTRAN_KERNEL_SOLVEBAIJ) 2102 #define PETSC_USE_FORTRAN_KERNEL_SOLVEBAIJ 2103 #endif 2104 2105 #if !defined(PETSC_USE_FORTRAN_KERNEL_MULTADDAIJ) 2106 #define PETSC_USE_FORTRAN_KERNEL_MULTADDAIJ 2107 #endif 2108 2109 #if !defined(PETSC_USE_FORTRAN_KERNEL_MDOT) 2110 #define PETSC_USE_FORTRAN_KERNEL_MDOT 2111 #endif 2112 2113 #if !defined(PETSC_USE_FORTRAN_KERNEL_XTIMESY) 2114 #define PETSC_USE_FORTRAN_KERNEL_XTIMESY 2115 #endif 2116 2117 #if !defined(PETSC_USE_FORTRAN_KERNEL_AYPX) 2118 #define PETSC_USE_FORTRAN_KERNEL_AYPX 2119 #endif 2120 2121 #if !defined(PETSC_USE_FORTRAN_KERNEL_WAXPY) 2122 #define PETSC_USE_FORTRAN_KERNEL_WAXPY 2123 #endif 2124 2125 #endif 2126 2127 /* 2128 Macros for indicating code that should be compiled with a C interface, 2129 rather than a C++ interface. Any routines that are dynamically loaded 2130 (such as the PCCreate_XXX() routines) must be wrapped so that the name 2131 mangler does not change the functions symbol name. This just hides the 2132 ugly extern "C" {} wrappers. 2133 */ 2134 #if defined(__cplusplus) 2135 #define EXTERN_C_BEGIN extern "C" { 2136 #define EXTERN_C_END } 2137 #else 2138 #define EXTERN_C_BEGIN 2139 #define EXTERN_C_END 2140 #endif 2141 2142 /* --------------------------------------------------------------------*/ 2143 2144 /*MC 2145 MPI_Comm - the basic object used by MPI to determine which processes are involved in a 2146 communication 2147 2148 Level: beginner 2149 2150 Note: This manual page is a place-holder because MPICH does not have a manual page for MPI_Comm 2151 2152 .seealso: PETSC_COMM_WORLD, PETSC_COMM_SELF 2153 M*/ 2154 2155 /*MC 2156 PetscScalar - PETSc type that represents either a double precision real number, a double precision 2157 complex number, a single precision real number, a __float128 real or complex or a __fp16 real - if the code is configured 2158 with --with-scalar-type=real,complex --with-precision=single,double,__float128,__fp16 2159 2160 Notes: 2161 For MPI calls that require datatypes, use MPIU_SCALAR as the datatype for PetscScalar and MPIU_SUM, MPIU_MAX etc for operations. They will automatically work correctly regardless of the size of PetscScalar. 2162 2163 Level: beginner 2164 2165 .seealso: PetscReal, PetscComplex, PetscInt, MPIU_REAL, MPIU_SCALAR, MPIU_COMPLEX, MPIU_INT 2166 M*/ 2167 2168 /*MC 2169 PetscComplex - PETSc type that represents a complex number with precision matching that of PetscReal. 2170 2171 Synopsis: 2172 #include <petscsys.h> 2173 PetscComplex number = 1. + 2.*PETSC_i; 2174 2175 Notes: 2176 For MPI calls that require datatypes, use MPIU_COMPLEX as the datatype for PetscComplex and MPIU_SUM etc for operations. 2177 They will automatically work correctly regardless of the size of PetscComplex. 2178 2179 See PetscScalar for details on how to ./configure the size of PetscReal 2180 2181 Complex numbers are automatically available if PETSc was able to find a working complex implementation 2182 2183 Level: beginner 2184 2185 .seealso: PetscReal, PetscScalar, PetscComplex, PetscInt, MPIU_REAL, MPIU_SCALAR, MPIU_COMPLEX, MPIU_INT, PETSC_i 2186 M*/ 2187 2188 /*MC 2189 PetscReal - PETSc type that represents a real number version of PetscScalar 2190 2191 2192 Notes: 2193 For MPI calls that require datatypes, use MPIU_REAL as the datatype for PetscScalar and MPIU_SUM, MPIU_MAX, etc. for operations. 2194 They will automatically work correctly regardless of the size of PetscReal. 2195 2196 See PetscScalar for details on how to ./configure the size of PetscReal. 2197 2198 Level: beginner 2199 2200 .seealso: PetscScalar, PetscComplex, PetscInt, MPIU_REAL, MPIU_SCALAR, MPIU_COMPLEX, MPIU_INT 2201 M*/ 2202 2203 /*MC 2204 MPIU_SCALAR - MPI datatype corresponding to PetscScalar 2205 2206 Notes: 2207 In MPI calls that require an MPI datatype that matches a PetscScalar or array of PetscScalar values, pass this value. 2208 2209 Level: beginner 2210 2211 .seealso: PetscReal, PetscScalar, PetscComplex, PetscInt, MPIU_REAL, MPIU_COMPLEX, MPIU_INT 2212 M*/ 2213 2214 /*MC 2215 MPIU_COMPLEX - MPI datatype corresponding to PetscComplex 2216 2217 Notes: 2218 In MPI calls that require an MPI datatype that matches a PetscComplex or array of PetscComplex values, pass this value. 2219 2220 Level: beginner 2221 2222 .seealso: PetscReal, PetscScalar, PetscComplex, PetscInt, MPIU_REAL, MPIU_SCALAR, MPIU_COMPLEX, MPIU_INT, PETSC_i 2223 M*/ 2224 2225 /*MC 2226 MPIU_REAL - MPI datatype corresponding to PetscReal 2227 2228 Notes: 2229 In MPI calls that require an MPI datatype that matches a PetscReal or array of PetscReal values, pass this value. 2230 2231 Level: beginner 2232 2233 .seealso: PetscReal, PetscScalar, PetscComplex, PetscInt, MPIU_SCALAR, MPIU_COMPLEX, MPIU_INT 2234 M*/ 2235 2236 #if defined(PETSC_HAVE_MPIIO) 2237 #if !defined(PETSC_WORDS_BIGENDIAN) 2238 PETSC_EXTERN PetscErrorCode MPIU_File_write_all(MPI_File,void*,PetscMPIInt,MPI_Datatype,MPI_Status*); 2239 PETSC_EXTERN PetscErrorCode MPIU_File_read_all(MPI_File,void*,PetscMPIInt,MPI_Datatype,MPI_Status*); 2240 #else 2241 #define MPIU_File_write_all(a,b,c,d,e) MPI_File_write_all(a,b,c,d,e) 2242 #define MPIU_File_read_all(a,b,c,d,e) MPI_File_read_all(a,b,c,d,e) 2243 #endif 2244 #endif 2245 2246 /* the following petsc_static_inline require petscerror.h */ 2247 2248 /* Limit MPI to 32-bits */ 2249 #define PETSC_MPI_INT_MAX 2147483647 2250 #define PETSC_MPI_INT_MIN -2147483647 2251 /* Limit BLAS to 32-bits */ 2252 #define PETSC_BLAS_INT_MAX 2147483647 2253 #define PETSC_BLAS_INT_MIN -2147483647 2254 2255 /*@C 2256 PetscBLASIntCast - casts a PetscInt (which may be 64 bits in size) to a PetscBLASInt (which may be 32 bits in size), generates an 2257 error if the PetscBLASInt is not large enough to hold the number. 2258 2259 Not Collective 2260 2261 Input Parameter: 2262 . a - the PetscInt value 2263 2264 Output Parameter: 2265 . b - the resulting PetscBLASInt value 2266 2267 Level: advanced 2268 2269 Not available from Fortran 2270 2271 .seealso: PetscBLASInt, PetscMPIInt, PetscInt, PetscMPIIntCast() 2272 @*/ 2273 PETSC_STATIC_INLINE PetscErrorCode PetscBLASIntCast(PetscInt a,PetscBLASInt *b) 2274 { 2275 PetscFunctionBegin; 2276 *b = (PetscBLASInt)(a); 2277 #if defined(PETSC_USE_64BIT_INDICES) && !defined(PETSC_HAVE_64BIT_BLAS_INDICES) 2278 if ((a) > PETSC_BLAS_INT_MAX) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Array too long for BLAS/LAPACK"); 2279 #endif 2280 PetscFunctionReturn(0); 2281 } 2282 2283 /*@C 2284 PetscMPIIntCast - casts a PetscInt (which may be 64 bits in size) to a PetscMPIInt (which may be 32 bits in size), generates an 2285 error if the PetscMPIInt is not large enough to hold the number. 2286 2287 Not Collective 2288 2289 Input Parameter: 2290 . a - the PetscInt value 2291 2292 Output Parameter: 2293 . b - the resulting PetscMPIInt value 2294 2295 Level: advanced 2296 2297 Not available from Fortran 2298 2299 .seealso: PetscBLASInt, PetscMPIInt, PetscInt, PetscBLASIntCast() 2300 @*/ 2301 PETSC_STATIC_INLINE PetscErrorCode PetscMPIIntCast(PetscInt a,PetscMPIInt *b) 2302 { 2303 PetscFunctionBegin; 2304 *b = (PetscMPIInt)(a); 2305 #if defined(PETSC_USE_64BIT_INDICES) 2306 if ((a) > PETSC_MPI_INT_MAX) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Array too long for MPI"); 2307 #endif 2308 PetscFunctionReturn(0); 2309 } 2310 2311 #define PetscInt64Mult(a,b) ((PetscInt64)(a))*((PetscInt64)(b)) 2312 2313 /*@C 2314 2315 PetscRealIntMultTruncate - Computes the product of a positive PetscReal and a positive PetscInt and truncates the value to slightly less than the maximal possible value 2316 2317 Not Collective 2318 2319 Input Parameter: 2320 + a - the PetscReal value 2321 - b - the second value 2322 2323 Returns: 2324 the result as a PetscInt value 2325 2326 Use PetscInt64Mult() to compute the product of two PetscInt as a PetscInt64 2327 Use PetscIntMultTruncate() to compute the product of two positive PetscInt and truncate to fit a PetscInt 2328 Use PetscIntMultError() to compute the product of two PetscInt if you wish to generate an error if the result will not fit in a PetscInt 2329 2330 Developers Note: 2331 We currently assume that PetscInt addition can never overflow, this is obviously wrong but requires many more checks. 2332 2333 This is used where we compute approximate sizes for workspace and need to insure the workspace is index-able. 2334 2335 Not available from Fortran 2336 2337 Level: advanced 2338 2339 .seealso: PetscBLASInt, PetscMPIInt, PetscInt, PetscBLASIntCast(), PetscInt64Mult() 2340 @*/ 2341 PETSC_STATIC_INLINE PetscInt PetscRealIntMultTruncate(PetscReal a,PetscInt b) 2342 { 2343 PetscInt64 r; 2344 2345 r = (PetscInt64) (a*(PetscReal)b); 2346 if (r > PETSC_MAX_INT - 100) r = PETSC_MAX_INT - 100; 2347 return (PetscInt) r; 2348 } 2349 2350 /*@C 2351 2352 PetscIntMultTruncate - Computes the product of two positive PetscInt and truncates the value to slightly less than the maximal possible value 2353 2354 Not Collective 2355 2356 Input Parameter: 2357 + a - the PetscInt value 2358 - b - the second value 2359 2360 Returns: 2361 the result as a PetscInt value 2362 2363 Use PetscInt64Mult() to compute the product of two PetscInt as a PetscInt64 2364 Use PetscRealIntMultTruncate() to compute the product of a PetscReal and a PetscInt and truncate to fit a PetscInt 2365 Use PetscIntMultError() to compute the product of two PetscInt if you wish to generate an error if the result will not fit in a PetscInt 2366 2367 Not available from Fortran 2368 2369 Developers Note: We currently assume that PetscInt addition can never overflow, this is obviously wrong but requires many more checks. 2370 2371 This is used where we compute approximate sizes for workspace and need to insure the workspace is index-able. 2372 2373 Level: advanced 2374 2375 .seealso: PetscBLASInt, PetscMPIInt, PetscInt, PetscBLASIntCast(), PetscInt64Mult() 2376 @*/ 2377 PETSC_STATIC_INLINE PetscInt PetscIntMultTruncate(PetscInt a,PetscInt b) 2378 { 2379 PetscInt64 r; 2380 2381 r = PetscInt64Mult(a,b); 2382 if (r > PETSC_MAX_INT - 100) r = PETSC_MAX_INT - 100; 2383 return (PetscInt) r; 2384 } 2385 2386 /*@C 2387 2388 PetscIntSumTruncate - Computes the sum of two positive PetscInt and truncates the value to slightly less than the maximal possible value 2389 2390 Not Collective 2391 2392 Input Parameter: 2393 + a - the PetscInt value 2394 - b - the second value 2395 2396 Returns: 2397 the result as a PetscInt value 2398 2399 Use PetscInt64Mult() to compute the product of two PetscInt as a PetscInt64 2400 Use PetscRealIntMultTruncate() to compute the product of a PetscReal and a PetscInt and truncate to fit a PetscInt 2401 Use PetscIntMultError() to compute the product of two PetscInt if you wish to generate an error if the result will not fit in a PetscInt 2402 2403 This is used where we compute approximate sizes for workspace and need to insure the workspace is index-able. 2404 2405 Not available from Fortran 2406 2407 Level: advanced 2408 2409 .seealso: PetscBLASInt, PetscMPIInt, PetscInt, PetscBLASIntCast(), PetscInt64Mult() 2410 @*/ 2411 PETSC_STATIC_INLINE PetscInt PetscIntSumTruncate(PetscInt a,PetscInt b) 2412 { 2413 PetscInt64 r; 2414 2415 r = ((PetscInt64)a) + ((PetscInt64)b); 2416 if (r > PETSC_MAX_INT - 100) r = PETSC_MAX_INT - 100; 2417 return (PetscInt) r; 2418 } 2419 2420 /*@C 2421 2422 PetscIntMultError - Computes the product of two positive PetscInt and generates an error with overflow. 2423 2424 Not Collective 2425 2426 Input Parameter: 2427 + a - the PetscInt value 2428 - b - the second value 2429 2430 Output Parameter:ma 2431 . result - the result as a PetscInt value, or NULL if you do not want the result, you just want to check if it overflows 2432 2433 Use PetscInt64Mult() to compute the product of two 32 bit PetscInt and store in a PetscInt64 2434 Use PetscIntMultTruncate() to compute the product of two PetscInt and truncate it to fit in a PetscInt 2435 2436 Not available from Fortran 2437 2438 Developers Note: We currently assume that PetscInt addition does not overflow, this is obviously wrong but requires many more checks. 2439 2440 Level: advanced 2441 2442 .seealso: PetscBLASInt, PetscMPIInt, PetscInt, PetscBLASIntCast(), PetscIntMult64(), PetscIntSumError() 2443 @*/ 2444 PETSC_STATIC_INLINE PetscErrorCode PetscIntMultError(PetscInt a,PetscInt b,PetscInt *result) 2445 { 2446 PetscInt64 r; 2447 2448 PetscFunctionBegin; 2449 r = PetscInt64Mult(a,b); 2450 #if !defined(PETSC_USE_64BIT_INDICES) 2451 if (r > PETSC_MAX_INT) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_SUP,"Product of two integer %d %d overflow, you must ./configure PETSc with --with-64-bit-indices for the case you are running",a,b); 2452 #endif 2453 if (result) *result = (PetscInt) r; 2454 PetscFunctionReturn(0); 2455 } 2456 2457 /*@C 2458 2459 PetscIntSumError - Computes the sum of two positive PetscInt and generates an error with overflow. 2460 2461 Not Collective 2462 2463 Input Parameter: 2464 + a - the PetscInt value 2465 - b - the second value 2466 2467 Output Parameter:ma 2468 . c - the result as a PetscInt value, or NULL if you do not want the result, you just want to check if it overflows 2469 2470 Use PetscInt64Mult() to compute the product of two 32 bit PetscInt and store in a PetscInt64 2471 Use PetscIntMultTruncate() to compute the product of two PetscInt and truncate it to fit in a PetscInt 2472 2473 Not available from Fortran 2474 2475 Level: advanced 2476 2477 .seealso: PetscBLASInt, PetscMPIInt, PetscInt, PetscBLASIntCast(), PetscInt64Mult() 2478 @*/ 2479 PETSC_STATIC_INLINE PetscErrorCode PetscIntSumError(PetscInt a,PetscInt b,PetscInt *result) 2480 { 2481 PetscInt64 r; 2482 2483 PetscFunctionBegin; 2484 r = ((PetscInt64)a) + ((PetscInt64)b); 2485 #if !defined(PETSC_USE_64BIT_INDICES) 2486 if (r > PETSC_MAX_INT) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_SUP,"Sum of two integer %d %d overflow, you must ./configure PETSc with --with-64-bit-indices for the case you are running",a,b); 2487 #endif 2488 if (result) *result = (PetscInt) r; 2489 PetscFunctionReturn(0); 2490 } 2491 2492 /* 2493 The IBM include files define hz, here we hide it so that it may be used as a regular user variable. 2494 */ 2495 #if defined(hz) 2496 #undef hz 2497 #endif 2498 2499 /* For arrays that contain filenames or paths */ 2500 2501 2502 #if defined(PETSC_HAVE_LIMITS_H) 2503 #include <limits.h> 2504 #endif 2505 #if defined(PETSC_HAVE_SYS_PARAM_H) 2506 #include <sys/param.h> 2507 #endif 2508 #if defined(PETSC_HAVE_SYS_TYPES_H) 2509 #include <sys/types.h> 2510 #endif 2511 #if defined(MAXPATHLEN) 2512 # define PETSC_MAX_PATH_LEN MAXPATHLEN 2513 #elif defined(MAX_PATH) 2514 # define PETSC_MAX_PATH_LEN MAX_PATH 2515 #elif defined(_MAX_PATH) 2516 # define PETSC_MAX_PATH_LEN _MAX_PATH 2517 #else 2518 # define PETSC_MAX_PATH_LEN 4096 2519 #endif 2520 2521 /*MC 2522 2523 PETSC_VERSION - This manual page provides information about how PETSc documents and uses its version information. This information is available to both C/C++ 2524 and Fortran compilers when petscsys.h is included. 2525 2526 2527 The current PETSc version and the API for accessing it are defined in petscversion.h 2528 2529 The complete version number is given as the triple PETSC_VERSION_MAJOR.PETSC_VERSION_MINOR.PETSC_VERSION_SUBMINOR (in short hand x.y.z) 2530 2531 A change in the minor version number (y) indicates possible/likely changes in the PETSc API. Note this is different than with the semantic versioning convention 2532 where only a change in the major version number (x) indicates a change in the API. 2533 2534 A subminor greater than zero indicates a patch release. Version x.y.z maintains source and binary compatibility with version x.y.w for all z and w 2535 2536 Use the macros PETSC_VERSION_EQ(x,y,z), PETSC_VERSION_LT(x,y,z), PETSC_VERSION_LE(x,y,z), PETSC_VERSION_GT(x,y,z), 2537 PETSC_VERSION_GE(x,y,z) to determine if the current version is equal to, less than, less than or equal to, greater than or greater than or equal to a given 2538 version number (x.y.z). 2539 2540 PETSC_RELEASE_DATE is the date the x.y version was released (i.e. the version before any patch releases) 2541 2542 PETSC_VERSION_DATE is the date the x.y.z version was released 2543 2544 PETSC_VERSION_GIT is the last git commit to the repository given in the form vx.y.z-wwwww 2545 2546 PETSC_VERSION_DATE_GIT is the date of the last git commit to the repository 2547 2548 Level: intermediate 2549 2550 PETSC_VERSION_() and PETSC_VERSION_PATCH are deprecated and will eventually be removed. For several releases PETSC_VERSION_PATCH is always 0 2551 2552 M*/ 2553 2554 /*MC 2555 2556 UsingFortran - To use PETSc with Fortran you must use both PETSc include files and modules. At the beginning 2557 of every function and module definition you need something like 2558 2559 $ 2560 $#include "petsc/finclude/petscXXX.h" 2561 $ use petscXXX 2562 2563 You can declare PETSc variables using either of the following. 2564 2565 $ XXX variablename 2566 $ type(tXXX) variablename 2567 2568 For example, 2569 2570 $#include "petsc/finclude/petscvec.h" 2571 $ use petscvec 2572 $ 2573 $ Vec b 2574 $ type(tVec) x 2575 2576 Level: beginner 2577 2578 M*/ 2579 2580 PETSC_EXTERN PetscErrorCode PetscGetArchType(char[],size_t); 2581 PETSC_EXTERN PetscErrorCode PetscGetHostName(char[],size_t); 2582 PETSC_EXTERN PetscErrorCode PetscGetUserName(char[],size_t); 2583 PETSC_EXTERN PetscErrorCode PetscGetProgramName(char[],size_t); 2584 PETSC_EXTERN PetscErrorCode PetscSetProgramName(const char[]); 2585 PETSC_EXTERN PetscErrorCode PetscGetDate(char[],size_t); 2586 PETSC_EXTERN PetscErrorCode PetscGetVersion(char[], size_t); 2587 PETSC_EXTERN PetscErrorCode PetscGetVersionNumber(PetscInt*,PetscInt*,PetscInt*,PetscInt*); 2588 2589 PETSC_EXTERN PetscErrorCode PetscSortInt(PetscInt,PetscInt[]); 2590 PETSC_EXTERN PetscErrorCode PetscSortedRemoveDupsInt(PetscInt*,PetscInt[]); 2591 PETSC_EXTERN PetscErrorCode PetscSortRemoveDupsInt(PetscInt*,PetscInt[]); 2592 PETSC_EXTERN PetscErrorCode PetscFindInt(PetscInt, PetscInt, const PetscInt[], PetscInt*); 2593 PETSC_EXTERN PetscErrorCode PetscFindMPIInt(PetscMPIInt, PetscInt, const PetscMPIInt[], PetscInt*); 2594 PETSC_EXTERN PetscErrorCode PetscSortIntWithPermutation(PetscInt,const PetscInt[],PetscInt[]); 2595 PETSC_EXTERN PetscErrorCode PetscSortStrWithPermutation(PetscInt,const char*[],PetscInt[]); 2596 PETSC_EXTERN PetscErrorCode PetscSortIntWithArray(PetscInt,PetscInt[],PetscInt[]); 2597 PETSC_EXTERN PetscErrorCode PetscSortIntWithArrayPair(PetscInt,PetscInt[],PetscInt[],PetscInt[]); 2598 PETSC_EXTERN PetscErrorCode PetscSortMPIInt(PetscInt,PetscMPIInt[]); 2599 PETSC_EXTERN PetscErrorCode PetscSortRemoveDupsMPIInt(PetscInt*,PetscMPIInt[]); 2600 PETSC_EXTERN PetscErrorCode PetscSortMPIIntWithArray(PetscMPIInt,PetscMPIInt[],PetscMPIInt[]); 2601 PETSC_EXTERN PetscErrorCode PetscSortIntWithScalarArray(PetscInt,PetscInt[],PetscScalar[]); 2602 PETSC_EXTERN PetscErrorCode PetscSortIntWithDataArray(PetscInt,PetscInt[],void*,size_t,void*); 2603 PETSC_EXTERN PetscErrorCode PetscSortReal(PetscInt,PetscReal[]); 2604 PETSC_EXTERN PetscErrorCode PetscSortRealWithArrayInt(PetscInt,PetscReal[],PetscInt[]); 2605 PETSC_EXTERN PetscErrorCode PetscSortRealWithPermutation(PetscInt,const PetscReal[],PetscInt[]); 2606 PETSC_EXTERN PetscErrorCode PetscSortRemoveDupsReal(PetscInt*,PetscReal[]); 2607 PETSC_EXTERN PetscErrorCode PetscFindReal(PetscReal,PetscInt,const PetscReal[],PetscReal,PetscInt*); 2608 PETSC_EXTERN PetscErrorCode PetscSortSplit(PetscInt,PetscInt,PetscScalar[],PetscInt[]); 2609 PETSC_EXTERN PetscErrorCode PetscSortSplitReal(PetscInt,PetscInt,PetscReal[],PetscInt[]); 2610 PETSC_EXTERN PetscErrorCode PetscProcessTree(PetscInt,const PetscBool [],const PetscInt[],PetscInt*,PetscInt**,PetscInt**,PetscInt**,PetscInt**); 2611 PETSC_EXTERN PetscErrorCode PetscMergeIntArrayPair(PetscInt,const PetscInt[],const PetscInt[],PetscInt,const PetscInt[],const PetscInt[],PetscInt*,PetscInt**,PetscInt**); 2612 PETSC_EXTERN PetscErrorCode PetscMergeIntArray(PetscInt,const PetscInt[],PetscInt,const PetscInt[],PetscInt*,PetscInt**); 2613 PETSC_EXTERN PetscErrorCode PetscMergeMPIIntArray(PetscInt,const PetscMPIInt[],PetscInt,const PetscMPIInt[],PetscInt*,PetscMPIInt**); 2614 2615 PETSC_EXTERN PetscErrorCode PetscSetDisplay(void); 2616 PETSC_EXTERN PetscErrorCode PetscGetDisplay(char[],size_t); 2617 2618 /*J 2619 PetscRandomType - String with the name of a PETSc randomizer 2620 2621 Level: beginner 2622 2623 Notes: 2624 To use SPRNG or RANDOM123 you must have ./configure PETSc 2625 with the option --download-sprng or --download-random123 2626 2627 .seealso: PetscRandomSetType(), PetscRandom, PetscRandomCreate() 2628 J*/ 2629 typedef const char* PetscRandomType; 2630 #define PETSCRAND "rand" 2631 #define PETSCRAND48 "rand48" 2632 #define PETSCSPRNG "sprng" 2633 #define PETSCRANDER48 "rander48" 2634 #define PETSCRANDOM123 "random123" 2635 2636 /* Logging support */ 2637 PETSC_EXTERN PetscClassId PETSC_RANDOM_CLASSID; 2638 2639 PETSC_EXTERN PetscErrorCode PetscRandomInitializePackage(void); 2640 2641 /*S 2642 PetscRandom - Abstract PETSc object that manages generating random numbers 2643 2644 Level: intermediate 2645 2646 Concepts: random numbers 2647 2648 .seealso: PetscRandomCreate(), PetscRandomGetValue(), PetscRandomType 2649 S*/ 2650 typedef struct _p_PetscRandom* PetscRandom; 2651 2652 /* Dynamic creation and loading functions */ 2653 PETSC_EXTERN PetscFunctionList PetscRandomList; 2654 2655 PETSC_EXTERN PetscErrorCode PetscRandomRegister(const char[],PetscErrorCode (*)(PetscRandom)); 2656 PETSC_EXTERN PetscErrorCode PetscRandomSetType(PetscRandom, PetscRandomType); 2657 PETSC_EXTERN PetscErrorCode PetscRandomSetFromOptions(PetscRandom); 2658 PETSC_EXTERN PetscErrorCode PetscRandomGetType(PetscRandom, PetscRandomType*); 2659 PETSC_STATIC_INLINE PetscErrorCode PetscRandomViewFromOptions(PetscRandom A,PetscObject obj,const char name[]) {return PetscObjectViewFromOptions((PetscObject)A,obj,name);} 2660 PETSC_EXTERN PetscErrorCode PetscRandomView(PetscRandom,PetscViewer); 2661 2662 PETSC_EXTERN PetscErrorCode PetscRandomCreate(MPI_Comm,PetscRandom*); 2663 PETSC_EXTERN PetscErrorCode PetscRandomGetValue(PetscRandom,PetscScalar*); 2664 PETSC_EXTERN PetscErrorCode PetscRandomGetValueReal(PetscRandom,PetscReal*); 2665 PETSC_EXTERN PetscErrorCode PetscRandomGetInterval(PetscRandom,PetscScalar*,PetscScalar*); 2666 PETSC_EXTERN PetscErrorCode PetscRandomSetInterval(PetscRandom,PetscScalar,PetscScalar); 2667 PETSC_EXTERN PetscErrorCode PetscRandomSetSeed(PetscRandom,unsigned long); 2668 PETSC_EXTERN PetscErrorCode PetscRandomGetSeed(PetscRandom,unsigned long *); 2669 PETSC_EXTERN PetscErrorCode PetscRandomSeed(PetscRandom); 2670 PETSC_EXTERN PetscErrorCode PetscRandomDestroy(PetscRandom*); 2671 2672 PETSC_EXTERN PetscErrorCode PetscGetFullPath(const char[],char[],size_t); 2673 PETSC_EXTERN PetscErrorCode PetscGetRelativePath(const char[],char[],size_t); 2674 PETSC_EXTERN PetscErrorCode PetscGetWorkingDirectory(char[],size_t); 2675 PETSC_EXTERN PetscErrorCode PetscGetRealPath(const char[],char[]); 2676 PETSC_EXTERN PetscErrorCode PetscGetHomeDirectory(char[],size_t); 2677 PETSC_EXTERN PetscErrorCode PetscTestFile(const char[],char,PetscBool *); 2678 PETSC_EXTERN PetscErrorCode PetscTestDirectory(const char[],char,PetscBool *); 2679 PETSC_EXTERN PetscErrorCode PetscMkdir(const char[]); 2680 PETSC_EXTERN PetscErrorCode PetscRMTree(const char[]); 2681 2682 PETSC_EXTERN PetscErrorCode PetscBinaryRead(int,void*,PetscInt,PetscDataType); 2683 PETSC_EXTERN PetscErrorCode PetscBinarySynchronizedRead(MPI_Comm,int,void*,PetscInt,PetscDataType); 2684 PETSC_EXTERN PetscErrorCode PetscBinarySynchronizedWrite(MPI_Comm,int,void*,PetscInt,PetscDataType,PetscBool ); 2685 PETSC_EXTERN PetscErrorCode PetscBinaryWrite(int,void*,PetscInt,PetscDataType,PetscBool ); 2686 PETSC_EXTERN PetscErrorCode PetscBinaryOpen(const char[],PetscFileMode,int *); 2687 PETSC_EXTERN PetscErrorCode PetscBinaryClose(int); 2688 PETSC_EXTERN PetscErrorCode PetscSharedTmp(MPI_Comm,PetscBool *); 2689 PETSC_EXTERN PetscErrorCode PetscSharedWorkingDirectory(MPI_Comm,PetscBool *); 2690 PETSC_EXTERN PetscErrorCode PetscGetTmp(MPI_Comm,char[],size_t); 2691 PETSC_EXTERN PetscErrorCode PetscFileRetrieve(MPI_Comm,const char[],char[],size_t,PetscBool *); 2692 PETSC_EXTERN PetscErrorCode PetscLs(MPI_Comm,const char[],char[],size_t,PetscBool *); 2693 #if defined(PETSC_USE_SOCKET_VIEWER) 2694 PETSC_EXTERN PetscErrorCode PetscOpenSocket(const char[],int,int*); 2695 #endif 2696 2697 /* 2698 In binary files variables are stored using the following lengths, 2699 regardless of how they are stored in memory on any one particular 2700 machine. Use these rather then sizeof() in computing sizes for 2701 PetscBinarySeek(). 2702 */ 2703 #define PETSC_BINARY_INT_SIZE (32/8) 2704 #define PETSC_BINARY_FLOAT_SIZE (32/8) 2705 #define PETSC_BINARY_CHAR_SIZE (8/8) 2706 #define PETSC_BINARY_SHORT_SIZE (16/8) 2707 #define PETSC_BINARY_DOUBLE_SIZE (64/8) 2708 #define PETSC_BINARY_SCALAR_SIZE sizeof(PetscScalar) 2709 2710 /*E 2711 PetscBinarySeekType - argument to PetscBinarySeek() 2712 2713 Level: advanced 2714 2715 .seealso: PetscBinarySeek(), PetscBinarySynchronizedSeek() 2716 E*/ 2717 typedef enum {PETSC_BINARY_SEEK_SET = 0,PETSC_BINARY_SEEK_CUR = 1,PETSC_BINARY_SEEK_END = 2} PetscBinarySeekType; 2718 PETSC_EXTERN PetscErrorCode PetscBinarySeek(int,off_t,PetscBinarySeekType,off_t*); 2719 PETSC_EXTERN PetscErrorCode PetscBinarySynchronizedSeek(MPI_Comm,int,off_t,PetscBinarySeekType,off_t*); 2720 PETSC_EXTERN PetscErrorCode PetscByteSwap(void *,PetscDataType,PetscInt); 2721 2722 PETSC_EXTERN PetscErrorCode PetscSetDebugTerminal(const char[]); 2723 PETSC_EXTERN PetscErrorCode PetscSetDebugger(const char[],PetscBool ); 2724 PETSC_EXTERN PetscErrorCode PetscSetDefaultDebugger(void); 2725 PETSC_EXTERN PetscErrorCode PetscSetDebuggerFromString(const char*); 2726 PETSC_EXTERN PetscErrorCode PetscAttachDebugger(void); 2727 PETSC_EXTERN PetscErrorCode PetscStopForDebugger(void); 2728 2729 PETSC_EXTERN PetscErrorCode PetscGatherNumberOfMessages(MPI_Comm,const PetscMPIInt[],const PetscMPIInt[],PetscMPIInt*); 2730 PETSC_EXTERN PetscErrorCode PetscGatherMessageLengths(MPI_Comm,PetscMPIInt,PetscMPIInt,const PetscMPIInt[],PetscMPIInt**,PetscMPIInt**); 2731 PETSC_EXTERN PetscErrorCode PetscGatherMessageLengths2(MPI_Comm,PetscMPIInt,PetscMPIInt,const PetscMPIInt[],const PetscMPIInt[],PetscMPIInt**,PetscMPIInt**,PetscMPIInt**); 2732 PETSC_EXTERN PetscErrorCode PetscPostIrecvInt(MPI_Comm,PetscMPIInt,PetscMPIInt,const PetscMPIInt[],const PetscMPIInt[],PetscInt***,MPI_Request**); 2733 PETSC_EXTERN PetscErrorCode PetscPostIrecvScalar(MPI_Comm,PetscMPIInt,PetscMPIInt,const PetscMPIInt[],const PetscMPIInt[],PetscScalar***,MPI_Request**); 2734 PETSC_EXTERN PetscErrorCode PetscCommBuildTwoSided(MPI_Comm,PetscMPIInt,MPI_Datatype,PetscMPIInt,const PetscMPIInt*,const void*,PetscMPIInt*,PetscMPIInt**,void*) 2735 PetscAttrMPIPointerWithType(6,3); 2736 PETSC_EXTERN PetscErrorCode PetscCommBuildTwoSidedF(MPI_Comm,PetscMPIInt,MPI_Datatype,PetscMPIInt,const PetscMPIInt[],const void*,PetscMPIInt*,PetscMPIInt**,void*,PetscMPIInt, 2737 PetscErrorCode (*send)(MPI_Comm,const PetscMPIInt[],PetscMPIInt,PetscMPIInt,void*,MPI_Request[],void*), 2738 PetscErrorCode (*recv)(MPI_Comm,const PetscMPIInt[],PetscMPIInt,void*,MPI_Request[],void*),void *ctx) 2739 PetscAttrMPIPointerWithType(6,3); 2740 PETSC_EXTERN PetscErrorCode PetscCommBuildTwoSidedFReq(MPI_Comm,PetscMPIInt,MPI_Datatype,PetscMPIInt,const PetscMPIInt[],const void*,PetscMPIInt*,PetscMPIInt**,void*,PetscMPIInt, 2741 MPI_Request**,MPI_Request**, 2742 PetscErrorCode (*send)(MPI_Comm,const PetscMPIInt[],PetscMPIInt,PetscMPIInt,void*,MPI_Request[],void*), 2743 PetscErrorCode (*recv)(MPI_Comm,const PetscMPIInt[],PetscMPIInt,void*,MPI_Request[],void*),void *ctx) 2744 PetscAttrMPIPointerWithType(6,3); 2745 2746 /*E 2747 PetscBuildTwoSidedType - algorithm for setting up two-sided communication 2748 2749 $ PETSC_BUILDTWOSIDED_ALLREDUCE - classical algorithm using an MPI_Allreduce with 2750 $ a buffer of length equal to the communicator size. Not memory-scalable due to 2751 $ the large reduction size. Requires only MPI-1. 2752 $ PETSC_BUILDTWOSIDED_IBARRIER - nonblocking algorithm based on MPI_Issend and MPI_Ibarrier. 2753 $ Proved communication-optimal in Hoefler, Siebert, and Lumsdaine (2010). Requires MPI-3. 2754 $ PETSC_BUILDTWOSIDED_REDSCATTER - similar to above, but use more optimized function 2755 $ that only communicates the part of the reduction that is necessary. Requires MPI-2. 2756 2757 Level: developer 2758 2759 .seealso: PetscCommBuildTwoSided(), PetscCommBuildTwoSidedSetType(), PetscCommBuildTwoSidedGetType() 2760 E*/ 2761 typedef enum { 2762 PETSC_BUILDTWOSIDED_NOTSET = -1, 2763 PETSC_BUILDTWOSIDED_ALLREDUCE = 0, 2764 PETSC_BUILDTWOSIDED_IBARRIER = 1, 2765 PETSC_BUILDTWOSIDED_REDSCATTER = 2 2766 /* Updates here must be accompanied by updates in finclude/petscsys.h and the string array in mpits.c */ 2767 } PetscBuildTwoSidedType; 2768 PETSC_EXTERN const char *const PetscBuildTwoSidedTypes[]; 2769 PETSC_EXTERN PetscErrorCode PetscCommBuildTwoSidedSetType(MPI_Comm,PetscBuildTwoSidedType); 2770 PETSC_EXTERN PetscErrorCode PetscCommBuildTwoSidedGetType(MPI_Comm,PetscBuildTwoSidedType*); 2771 2772 PETSC_EXTERN PetscErrorCode PetscSSEIsEnabled(MPI_Comm,PetscBool *,PetscBool *); 2773 2774 /*E 2775 InsertMode - Whether entries are inserted or added into vectors or matrices 2776 2777 Level: beginner 2778 2779 .seealso: VecSetValues(), MatSetValues(), VecSetValue(), VecSetValuesBlocked(), 2780 VecSetValuesLocal(), VecSetValuesBlockedLocal(), MatSetValuesBlocked(), 2781 MatSetValuesBlockedLocal(), MatSetValuesLocal(), VecScatterBegin(), VecScatterEnd() 2782 E*/ 2783 typedef enum {NOT_SET_VALUES, INSERT_VALUES, ADD_VALUES, MAX_VALUES, INSERT_ALL_VALUES, ADD_ALL_VALUES, INSERT_BC_VALUES, ADD_BC_VALUES} InsertMode; 2784 2785 /*MC 2786 INSERT_VALUES - Put a value into a vector or matrix, overwrites any previous value 2787 2788 Level: beginner 2789 2790 .seealso: InsertMode, VecSetValues(), MatSetValues(), VecSetValue(), VecSetValuesBlocked(), 2791 VecSetValuesLocal(), VecSetValuesBlockedLocal(), MatSetValuesBlocked(), ADD_VALUES, 2792 MatSetValuesBlockedLocal(), MatSetValuesLocal(), VecScatterBegin(), VecScatterEnd(), MAX_VALUES 2793 2794 M*/ 2795 2796 /*MC 2797 ADD_VALUES - Adds a value into a vector or matrix, if there previously was no value, just puts the 2798 value into that location 2799 2800 Level: beginner 2801 2802 .seealso: InsertMode, VecSetValues(), MatSetValues(), VecSetValue(), VecSetValuesBlocked(), 2803 VecSetValuesLocal(), VecSetValuesBlockedLocal(), MatSetValuesBlocked(), INSERT_VALUES, 2804 MatSetValuesBlockedLocal(), MatSetValuesLocal(), VecScatterBegin(), VecScatterEnd(), MAX_VALUES 2805 2806 M*/ 2807 2808 /*MC 2809 MAX_VALUES - Puts the maximum of the scattered/gathered value and the current value into each location 2810 2811 Level: beginner 2812 2813 .seealso: InsertMode, VecScatterBegin(), VecScatterEnd(), ADD_VALUES, INSERT_VALUES 2814 2815 M*/ 2816 2817 PETSC_EXTERN MPI_Comm PetscObjectComm(PetscObject); 2818 2819 typedef enum {PETSC_SUBCOMM_GENERAL=0,PETSC_SUBCOMM_CONTIGUOUS=1,PETSC_SUBCOMM_INTERLACED=2} PetscSubcommType; 2820 PETSC_EXTERN const char *const PetscSubcommTypes[]; 2821 2822 /*S 2823 PetscSubcomm - A decomposition of an MPI communicator into subcommunicators 2824 2825 Notes: 2826 After a call to PetscSubcommSetType(), PetscSubcommSetTypeGeneral(), or PetscSubcommSetFromOptions() one may call 2827 $ PetscSubcommChild() returns the associated subcommunicator on this process 2828 $ PetscSubcommContiguousParent() returns a parent communitor but with all child of the same subcommunicator having contiguous rank 2829 2830 Sample Usage: 2831 PetscSubcommCreate() 2832 PetscSubcommSetNumber() 2833 PetscSubcommSetType(PETSC_SUBCOMM_INTERLACED); 2834 ccomm = PetscSubcommChild() 2835 PetscSubcommDestroy() 2836 2837 Level: advanced 2838 2839 Concepts: communicator, create 2840 2841 Notes: 2842 $ PETSC_SUBCOMM_GENERAL - similar to MPI_Comm_split() each process sets the new communicator (color) they will belong to and the order within that communicator 2843 $ PETSC_SUBCOMM_CONTIGUOUS - each new communicator contains a set of process with contiguous ranks in the original MPI communicator 2844 $ PETSC_SUBCOMM_INTERLACED - each new communictor contains a set of processes equally far apart in rank from the others in that new communicator 2845 2846 Example: Consider a communicator with six processes split into 3 subcommunicators. 2847 $ PETSC_SUBCOMM_CONTIGUOUS - the first communicator contains rank 0,1 the second rank 2,3 and the third rank 4,5 in the original ordering of the original communicator 2848 $ PETSC_SUBCOMM_INTERLACED - the first communicator contains rank 0,3, the second 1,4 and the third 2,5 2849 2850 Developer Notes: 2851 This is used in objects such as PCREDUNDANT to manage the subcommunicators on which the redundant computations 2852 are performed. 2853 2854 2855 .seealso: PetscSubcommCreate(), PetscSubcommSetNumber(), PetscSubcommSetType(), PetscSubcommView(), PetscSubcommSetFromOptions() 2856 2857 S*/ 2858 typedef struct _n_PetscSubcomm* PetscSubcomm; 2859 2860 struct _n_PetscSubcomm { 2861 MPI_Comm parent; /* parent communicator */ 2862 MPI_Comm dupparent; /* duplicate parent communicator, under which the processors of this subcomm have contiguous rank */ 2863 MPI_Comm child; /* the sub-communicator */ 2864 PetscMPIInt n; /* num of subcommunicators under the parent communicator */ 2865 PetscMPIInt color; /* color of processors belong to this communicator */ 2866 PetscMPIInt *subsize; /* size of subcommunicator[color] */ 2867 PetscSubcommType type; 2868 char *subcommprefix; 2869 }; 2870 2871 PETSC_STATIC_INLINE MPI_Comm PetscSubcommParent(PetscSubcomm scomm) {return scomm->parent;} 2872 PETSC_STATIC_INLINE MPI_Comm PetscSubcommChild(PetscSubcomm scomm) {return scomm->child;} 2873 PETSC_STATIC_INLINE MPI_Comm PetscSubcommContiguousParent(PetscSubcomm scomm) {return scomm->dupparent;} 2874 PETSC_EXTERN PetscErrorCode PetscSubcommCreate(MPI_Comm,PetscSubcomm*); 2875 PETSC_EXTERN PetscErrorCode PetscSubcommDestroy(PetscSubcomm*); 2876 PETSC_EXTERN PetscErrorCode PetscSubcommSetNumber(PetscSubcomm,PetscInt); 2877 PETSC_EXTERN PetscErrorCode PetscSubcommSetType(PetscSubcomm,PetscSubcommType); 2878 PETSC_EXTERN PetscErrorCode PetscSubcommSetTypeGeneral(PetscSubcomm,PetscMPIInt,PetscMPIInt); 2879 PETSC_EXTERN PetscErrorCode PetscSubcommView(PetscSubcomm,PetscViewer); 2880 PETSC_EXTERN PetscErrorCode PetscSubcommSetFromOptions(PetscSubcomm); 2881 PETSC_EXTERN PetscErrorCode PetscSubcommSetOptionsPrefix(PetscSubcomm,const char[]); 2882 2883 /*S 2884 PetscHeap - A simple class for managing heaps 2885 2886 Level: intermediate 2887 2888 Concepts: random numbers 2889 2890 .seealso: PetscHeapCreate(), PetscHeapAdd(), PetscHeapPop(), PetscHeapPeek(), PetscHeapStash(), PetscHeapUnstash(), PetscHeapView(), PetscHeapDestroy() 2891 S*/ 2892 typedef struct _PetscHeap *PetscHeap; 2893 2894 PETSC_EXTERN PetscErrorCode PetscHeapCreate(PetscInt,PetscHeap*); 2895 PETSC_EXTERN PetscErrorCode PetscHeapAdd(PetscHeap,PetscInt,PetscInt); 2896 PETSC_EXTERN PetscErrorCode PetscHeapPop(PetscHeap,PetscInt*,PetscInt*); 2897 PETSC_EXTERN PetscErrorCode PetscHeapPeek(PetscHeap,PetscInt*,PetscInt*); 2898 PETSC_EXTERN PetscErrorCode PetscHeapStash(PetscHeap,PetscInt,PetscInt); 2899 PETSC_EXTERN PetscErrorCode PetscHeapUnstash(PetscHeap); 2900 PETSC_EXTERN PetscErrorCode PetscHeapDestroy(PetscHeap*); 2901 PETSC_EXTERN PetscErrorCode PetscHeapView(PetscHeap,PetscViewer); 2902 2903 PETSC_EXTERN PetscErrorCode PetscProcessPlacementView(PetscViewer); 2904 typedef struct _n_PetscCommShared* PetscCommShared; 2905 PETSC_EXTERN PetscErrorCode PetscCommSharedGet(MPI_Comm,PetscCommShared*); 2906 PETSC_EXTERN PetscErrorCode PetscCommSharedGlobalToLocal(PetscCommShared,PetscMPIInt,PetscMPIInt*); 2907 PETSC_EXTERN PetscErrorCode PetscCommSharedGetComm(PetscCommShared,MPI_Comm*); 2908 2909 /*S 2910 PetscSegBuffer - a segmented extendable buffer 2911 2912 Level: developer 2913 2914 .seealso: PetscSegBufferCreate(), PetscSegBufferGet(), PetscSegBufferExtract(), PetscSegBufferDestroy() 2915 S*/ 2916 typedef struct _n_PetscSegBuffer *PetscSegBuffer; 2917 PETSC_EXTERN PetscErrorCode PetscSegBufferCreate(size_t,size_t,PetscSegBuffer*); 2918 PETSC_EXTERN PetscErrorCode PetscSegBufferDestroy(PetscSegBuffer*); 2919 PETSC_EXTERN PetscErrorCode PetscSegBufferGet(PetscSegBuffer,size_t,void*); 2920 PETSC_EXTERN PetscErrorCode PetscSegBufferExtractAlloc(PetscSegBuffer,void*); 2921 PETSC_EXTERN PetscErrorCode PetscSegBufferExtractTo(PetscSegBuffer,void*); 2922 PETSC_EXTERN PetscErrorCode PetscSegBufferExtractInPlace(PetscSegBuffer,void*); 2923 PETSC_EXTERN PetscErrorCode PetscSegBufferGetSize(PetscSegBuffer,size_t*); 2924 PETSC_EXTERN PetscErrorCode PetscSegBufferUnuse(PetscSegBuffer,size_t); 2925 2926 2927 /* Type-safe wrapper to encourage use of PETSC_RESTRICT. Does not use PetscFunctionBegin because the error handling 2928 * prevents the compiler from completely erasing the stub. This is called in inner loops so it has to be as fast as 2929 * possible. */ 2930 PETSC_STATIC_INLINE PetscErrorCode PetscSegBufferGetInts(PetscSegBuffer seg,PetscInt count,PetscInt *PETSC_RESTRICT *slot) {return PetscSegBufferGet(seg,(size_t)count,(void**)slot);} 2931 2932 typedef struct _n_PetscOptionsHelpPrinted *PetscOptionsHelpPrinted; 2933 extern PetscOptionsHelpPrinted PetscOptionsHelpPrintedSingleton; 2934 PETSC_EXTERN PetscErrorCode PetscOptionsHelpPrintedDestroy(PetscOptionsHelpPrinted*); 2935 PETSC_EXTERN PetscErrorCode PetscOptionsHelpPrintedCreate(PetscOptionsHelpPrinted*); 2936 PETSC_EXTERN PetscErrorCode PetscOptionsHelpPrintedCheck(PetscOptionsHelpPrinted,const char*,const char*,PetscBool*); 2937 2938 #include <stdarg.h> 2939 PETSC_EXTERN PetscErrorCode PetscVSNPrintf(char*,size_t,const char[],size_t*,va_list); 2940 PETSC_EXTERN PetscErrorCode (*PetscVFPrintf)(FILE*,const char[],va_list); 2941 2942 PETSC_EXTERN PetscSegBuffer PetscCitationsList; 2943 2944 /*@C 2945 PetscCitationsRegister - Register a bibtex item to obtain credit for an implemented algorithm used in the code. 2946 2947 Not Collective - only what is registered on rank 0 of PETSC_COMM_WORLD will be printed 2948 2949 Input Parameters: 2950 + cite - the bibtex item, formated to displayed on multiple lines nicely 2951 - set - a boolean variable initially set to PETSC_FALSE; this is used to insure only a single registration of the citation 2952 2953 Level: intermediate 2954 2955 Not available from Fortran 2956 2957 Options Database: 2958 . -citations [filename] - print out the bibtex entries for the given computation 2959 @*/ 2960 PETSC_STATIC_INLINE PetscErrorCode PetscCitationsRegister(const char cit[],PetscBool *set) 2961 { 2962 size_t len; 2963 char *vstring; 2964 PetscErrorCode ierr; 2965 2966 PetscFunctionBegin; 2967 if (set && *set) PetscFunctionReturn(0); 2968 ierr = PetscStrlen(cit,&len);CHKERRQ(ierr); 2969 ierr = PetscSegBufferGet(PetscCitationsList,len,&vstring);CHKERRQ(ierr); 2970 ierr = PetscMemcpy(vstring,cit,len);CHKERRQ(ierr); 2971 if (set) *set = PETSC_TRUE; 2972 PetscFunctionReturn(0); 2973 } 2974 2975 PETSC_EXTERN PetscErrorCode PetscURLShorten(const char[],char[],size_t); 2976 PETSC_EXTERN PetscErrorCode PetscGoogleDriveAuthorize(MPI_Comm,char[],char[],size_t); 2977 PETSC_EXTERN PetscErrorCode PetscGoogleDriveRefresh(MPI_Comm,const char[],char[],size_t); 2978 PETSC_EXTERN PetscErrorCode PetscGoogleDriveUpload(MPI_Comm,const char[],const char []); 2979 2980 PETSC_EXTERN PetscErrorCode PetscBoxAuthorize(MPI_Comm,char[],char[],size_t); 2981 PETSC_EXTERN PetscErrorCode PetscBoxRefresh(MPI_Comm,const char[],char[],char[],size_t); 2982 2983 PETSC_EXTERN PetscErrorCode PetscGlobusGetTransfers(MPI_Comm,const char[],char[],size_t); 2984 2985 PETSC_EXTERN PetscErrorCode PetscTextBelt(MPI_Comm,const char[],const char[],PetscBool*); 2986 PETSC_EXTERN PetscErrorCode PetscTellMyCell(MPI_Comm,const char[],const char[],PetscBool*); 2987 2988 PETSC_EXTERN PetscErrorCode PetscPullJSONValue(const char[],const char[],char[],size_t,PetscBool*); 2989 PETSC_EXTERN PetscErrorCode PetscPushJSONValue(char[],const char[],const char[],size_t); 2990 2991 2992 #if defined(PETSC_USE_DEBUG) 2993 /* 2994 Verify that all processes in the communicator have called this from the same line of code 2995 */ 2996 PETSC_EXTERN PetscErrorCode PetscAllreduceBarrierCheck(MPI_Comm,PetscMPIInt,int,const char*,const char *); 2997 2998 /*MC 2999 MPIU_Allreduce - a PETSc replacement for MPI_Allreduce() that tries to determine if the call from all the MPI processes occur from the 3000 same place in the PETSc code. This helps to detect bugs where different MPI processes follow different code paths 3001 resulting in inconsistent and incorrect calls to MPI_Allreduce(). 3002 3003 Collective on MPI_Comm 3004 3005 Synopsis: 3006 #include <petscsys.h> 3007 PetscErrorCode MPIU_Allreduce(void *indata,void *outdata,PetscMPIInt count,MPI_Datatype datatype, MPI_Op op, MPI_Comm comm); 3008 3009 Input Parameters: 3010 + indata - pointer to the input data to be reduced 3011 . count - the number of MPI data items in indata and outdata 3012 . datatype - the MPI datatype, for example MPI_INT 3013 . op - the MPI operation, for example MPI_SUM 3014 - comm - the MPI communicator on which the operation occurs 3015 3016 Output Parameter: 3017 . outdata - the reduced values 3018 3019 Notes: 3020 In optimized mode this directly calls MPI_Allreduce() 3021 3022 Level: developer 3023 3024 .seealso: MPI_Allreduce() 3025 M*/ 3026 #define MPIU_Allreduce(a,b,c,d,e,fcomm) (PetscAllreduceBarrierCheck(fcomm,c,__LINE__,PETSC_FUNCTION_NAME,__FILE__) || MPI_Allreduce(a,b,c,d,e,fcomm)) 3027 #else 3028 #define MPIU_Allreduce(a,b,c,d,e,fcomm) MPI_Allreduce(a,b,c,d,e,fcomm) 3029 #endif 3030 3031 #if defined(PETSC_HAVE_MPI_WIN_CREATE_FEATURE) 3032 PETSC_EXTERN PetscErrorCode MPIU_Win_allocate_shared(MPI_Aint,PetscMPIInt,MPI_Info,MPI_Comm,void*,MPI_Win*); 3033 PETSC_EXTERN PetscErrorCode MPIU_Win_shared_query(MPI_Win,PetscMPIInt,MPI_Aint*,PetscMPIInt*,void*); 3034 #endif 3035 3036 /* 3037 Returned from PETSc functions that are called from MPI, such as related to attributes 3038 */ 3039 PETSC_EXTERN PetscMPIInt PETSC_MPI_ERROR_CLASS,PETSC_MPI_ERROR_CODE; 3040 3041 #endif 3042