1 /* 2 This is the main PETSc include file (for C and C++). It is included by all 3 other PETSc include files, so it almost never has to be specifically included. 4 */ 5 #if !defined(__PETSCSYS_H) 6 #define __PETSCSYS_H 7 /* ========================================================================== */ 8 /* 9 petscconf.h is contained in ${PETSC_ARCH}/include/petscconf.h it is 10 found automatically by the compiler due to the -I${PETSC_DIR}/${PETSC_ARCH}/include 11 in the conf/variables definition of PETSC_INCLUDE 12 */ 13 #include "petscconf.h" 14 #include "petscfix.h" 15 16 #if defined(PETSC_DESIRE_FEATURE_TEST_MACROS) 17 /* 18 Feature test macros must be included before headers defined by IEEE Std 1003.1-2001 19 We only turn these in PETSc source files that require them by setting PETSC_DESIRE_FEATURE_TEST_MACROS 20 */ 21 #if defined(PETSC__POSIX_C_SOURCE_200112L) 22 #define _POSIX_C_SOURCE 200112L 23 #endif 24 #if defined(PETSC__BSD_SOURCE) 25 #define _BSD_SOURCE 26 #endif 27 #endif 28 29 /* ========================================================================== */ 30 /* 31 This facilitates using C version of PETSc from C++ and 32 C++ version from C. Use --with-c-support --with-clanguage=c++ with ./configure for the latter) 33 */ 34 #if defined(PETSC_CLANGUAGE_CXX) && !defined(PETSC_USE_EXTERN_CXX) && !defined(__cplusplus) 35 #error "PETSc configured with --with-clanguage=c++ and NOT --with-c-support - it can be used only with a C++ compiler" 36 #endif 37 38 #if defined(__cplusplus) 39 # define PETSC_FUNCTION_NAME PETSC_FUNCTION_NAME_CXX 40 #else 41 # define PETSC_FUNCTION_NAME PETSC_FUNCTION_NAME_C 42 #endif 43 44 #if defined(PETSC_USE_EXTERN_CXX) && defined(__cplusplus) 45 #define PETSC_EXTERN_CXX_BEGIN extern "C" { 46 #define PETSC_EXTERN_CXX_END } 47 #else 48 #define PETSC_EXTERN_CXX_BEGIN 49 #define PETSC_EXTERN_CXX_END 50 #endif 51 /* ========================================================================== */ 52 /* 53 Current PETSc version number and release date. Also listed in 54 Web page 55 src/docs/tex/manual/intro.tex, 56 src/docs/tex/manual/manual.tex. 57 src/docs/website/index.html. 58 */ 59 #include "petscversion.h" 60 #define PETSC_AUTHOR_INFO " The PETSc Team\n petsc-maint@mcs.anl.gov\n http://www.mcs.anl.gov/petsc/\n" 61 #if (PETSC_VERSION_RELEASE == 1) 62 #define PetscGetVersion(version,len) PetscSNPrintf(version,len,"Petsc Release Version %d.%d.%d, Patch %d, %s ", \ 63 PETSC_VERSION_MAJOR,PETSC_VERSION_MINOR, PETSC_VERSION_SUBMINOR, \ 64 PETSC_VERSION_PATCH,PETSC_VERSION_PATCH_DATE) 65 #else 66 #define PetscGetVersion(version,len) PetscSNPrintf(version,len,"Petsc Development HG revision: %s HG Date: %s", \ 67 PETSC_VERSION_HG, PETSC_VERSION_DATE_HG) 68 #endif 69 70 /*MC 71 PetscGetVersion - Gets the PETSc version information in a string. 72 73 Input Parameter: 74 . len - length of the string 75 76 Output Parameter: 77 . version - version string 78 79 Level: developer 80 81 Usage: 82 char version[256]; 83 ierr = PetscGetVersion(version,256);CHKERRQ(ierr) 84 85 Fortran Note: 86 This routine is not supported in Fortran. 87 88 .seealso: PetscGetProgramName() 89 90 M*/ 91 92 /* ========================================================================== */ 93 94 /* 95 Defines the interface to MPI allowing the use of all MPI functions. 96 97 PETSc does not use the C++ binding of MPI at ALL. The following flag 98 makes sure the C++ bindings are not included. The C++ bindings REQUIRE 99 putting mpi.h before ANY C++ include files, we cannot control this 100 with all PETSc users. Users who want to use the MPI C++ bindings can include 101 mpicxx.h directly in their code 102 */ 103 #define MPICH_SKIP_MPICXX 1 104 #define OMPI_SKIP_MPICXX 1 105 #include "mpi.h" 106 107 /* 108 Yuck, we need to put stdio.h AFTER mpi.h for MPICH2 with C++ compiler 109 see the top of mpicxx.h in the MPICH2 distribution. 110 111 The MPI STANDARD HAS TO BE CHANGED to prevent this nonsense. 112 */ 113 #include <stdio.h> 114 115 /* MSMPI on 32bit windows requires this yukky hack - that breaks MPI standard compliance */ 116 #if !defined(MPIAPI) 117 #define MPIAPI 118 #endif 119 120 121 /*MC 122 PetscErrorCode - datatype used for return error code from all PETSc functions 123 124 Level: beginner 125 126 .seealso: CHKERRQ, SETERRQ 127 M*/ 128 typedef int PetscErrorCode; 129 130 /*MC 131 132 PetscClassId - A unique id used to identify each PETSc class. 133 (internal integer in the data structure used for error 134 checking). These are all defined by an offset from the lowest 135 one, PETSC_SMALLEST_CLASSID. 136 137 Level: advanced 138 139 .seealso: PetscClassIdRegister(), PetscLogEventRegister(), PetscHeaderCreate() 140 M*/ 141 typedef int PetscClassId; 142 143 144 /*MC 145 PetscBLASInt - datatype used to represent 'int' parameters to BLAS/LAPACK functions. 146 147 Level: intermediate 148 149 Notes: usually this is the same as PetscInt, but if PETSc was built with --with-64-bit-indices but 150 standard C/Fortran integers are 32 bit then this is NOT the same as PetscInt it remains 32 bit 151 (except on very rare BLAS/LAPACK implementations that support 64 bit integers see the note below). 152 153 PetscBLASIntCheck(a) checks if the given PetscInt a will fit in a PetscBLASInt, if not it generates a 154 PETSC_ERR_ARG_OUTOFRANGE. 155 156 PetscBLASInt b = PetscBLASIntCast(a) checks if the given PetscInt a will fit in a PetscBLASInt, if not it 157 generates a PETSC_ERR_ARG_OUTOFRANGE 158 159 Developer Notes: The 64bit versions of MATLAB ship with BLAS and LAPACK that use 64 bit integers for sizes etc, 160 if you run ./configure with the option 161 --with-blas-lapack-lib=[/Applications/MATLAB_R2010b.app/bin/maci64/libmwblas.dylib,/Applications/MATLAB_R2010b.app/bin/maci64/libmwlapack.dylib] 162 for example, you can change the int below to long int. Since MATLAB uses the MKL (Intel Math Libraries) it is likely one can 163 purchase a 64 bit integer version of the MKL and use that with a PetscBLASInt of long int. 164 165 External packages such as hypre, ML, SuperLU etc do not provide any support for passing 64 bit integers to BLAS/LAPACK so cannot 166 be used with PETSc if you have set PetscBLASInt to long int. 167 168 .seealso: PetscMPIInt, PetscInt 169 170 M*/ 171 typedef int PetscBLASInt; 172 173 /*MC 174 PetscMPIInt - datatype used to represent 'int' parameters to MPI functions. 175 176 Level: intermediate 177 178 Notes: usually this is the same as PetscInt, but if PETSc was built with --with-64-bit-indices but 179 standard C/Fortran integers are 32 bit then this is NOT the same as PetscInt it remains 32 bit 180 181 PetscMPIIntCheck(a) checks if the given PetscInt a will fit in a PetscMPIInt, if not it generates a 182 PETSC_ERR_ARG_OUTOFRANGE. 183 184 PetscMPIInt b = PetscMPIIntCast(a) checks if the given PetscInt a will fit in a PetscMPIInt, if not it 185 generates a PETSC_ERR_ARG_OUTOFRANGE 186 187 .seealso: PetscBLASInt, PetscInt 188 189 M*/ 190 typedef int PetscMPIInt; 191 192 /*MC 193 PetscEnum - datatype used to pass enum types within PETSc functions. 194 195 Level: intermediate 196 197 PetscMPIIntCheck(a) checks if the given PetscInt a will fit in a PetscMPIInt, if not it generates a 198 PETSC_ERR_ARG_OUTOFRANGE. 199 200 PetscMPIInt b = PetscMPIIntCast(a) checks if the given PetscInt a will fit in a PetscMPIInt, if not it 201 generates a PETSC_ERR_ARG_OUTOFRANGE 202 203 .seealso: PetscOptionsGetEnum(), PetscOptionsEnum(), PetscBagRegisterEnum() 204 M*/ 205 typedef enum { ENUM_DUMMY } PetscEnum; 206 207 /*MC 208 PetscInt - PETSc type that represents integer - used primarily to 209 represent size of arrays and indexing into arrays. Its size can be configured with the option 210 --with-64-bit-indices - to be either 32bit or 64bit [default 32 bit ints] 211 212 Level: intermediate 213 214 .seealso: PetscScalar, PetscBLASInt, PetscMPIInt 215 M*/ 216 #if defined(PETSC_USE_64BIT_INDICES) 217 typedef long long PetscInt; 218 #define MPIU_INT MPI_LONG_LONG_INT 219 #else 220 typedef int PetscInt; 221 #define MPIU_INT MPI_INT 222 #endif 223 typedef long long Petsc64bitInt; 224 225 /*EC 226 227 PetscPrecision - indicates what precision the object is using 228 229 Level: advanced 230 231 .seealso: PetscObjectSetPrecision() 232 E*/ 233 typedef enum { PETSC_PRECISION_SINGLE=4,PETSC_PRECISION_DOUBLE=8 } PetscPrecision; 234 extern const char *PetscPrecisions[]; 235 236 237 /* 238 For the rare cases when one needs to send a size_t object with MPI 239 */ 240 #if (PETSC_SIZEOF_SIZE_T) == (PETSC_SIZEOF_INT) 241 #define MPIU_SIZE_T MPI_INT 242 #elif (PETSC_SIZEOF_SIZE_T) == (PETSC_SIZEOF_LONG) 243 #define MPIU_SIZE_T MPI_LONG 244 #elif (PETSC_SIZEOF_SIZE_T) == (PETSC_SIZEOF_LONG_LONG) 245 #define MPIU_SIZE_T MPI_LONG_LONG_INT 246 #else 247 #error "Unknown size for size_t! Send us a bugreport at petsc-maint@mcs.anl.gov" 248 #endif 249 250 251 /* 252 You can use PETSC_STDOUT as a replacement of stdout. You can also change 253 the value of PETSC_STDOUT to redirect all standard output elsewhere 254 */ 255 256 extern FILE* PETSC_STDOUT; 257 258 /* 259 You can use PETSC_STDERR as a replacement of stderr. You can also change 260 the value of PETSC_STDERR to redirect all standard error elsewhere 261 */ 262 extern FILE* PETSC_STDERR; 263 264 /* 265 PETSC_ZOPEFD is used to send data to the PETSc webpage. It can be used 266 in conjunction with PETSC_STDOUT, or by itself. 267 */ 268 extern FILE* PETSC_ZOPEFD; 269 270 #if !defined(PETSC_USE_EXTERN_CXX) && defined(__cplusplus) 271 /*MC 272 PetscPolymorphicSubroutine - allows defining a C++ polymorphic version of 273 a PETSc function that remove certain optional arguments for a simplier user interface 274 275 Synopsis: 276 PetscPolymorphicSubroutine(Functionname,(arguments of C++ function),(arguments of C function)) 277 278 Not collective 279 280 Level: developer 281 282 Example: 283 PetscPolymorphicSubroutine(VecNorm,(Vec x,PetscReal *r),(x,NORM_2,r)) generates the new routine 284 PetscErrorCode VecNorm(Vec x,PetscReal *r) = VecNorm(x,NORM_2,r) 285 286 .seealso: PetscPolymorphicFunction() 287 288 M*/ 289 #define PetscPolymorphicSubroutine(A,B,C) PETSC_STATIC_INLINE PetscErrorCode A B {return A C;} 290 291 /*MC 292 PetscPolymorphicScalar - allows defining a C++ polymorphic version of 293 a PETSc function that replaces a PetscScalar * argument with a PetscScalar argument 294 295 Synopsis: 296 PetscPolymorphicScalar(Functionname,(arguments of C++ function),(arguments of C function)) 297 298 Not collective 299 300 Level: developer 301 302 Example: 303 PetscPolymorphicScalar(VecAXPY,(PetscScalar _val,Vec x,Vec y),(&_Val,x,y)) generates the new routine 304 PetscErrorCode VecAXPY(PetscScalar _val,Vec x,Vec y) = {PetscScalar _Val = _val; return VecAXPY(&_Val,x,y);} 305 306 .seealso: PetscPolymorphicFunction(),PetscPolymorphicSubroutine() 307 308 M*/ 309 #define PetscPolymorphicScalar(A,B,C) PETSC_STATIC_INLINE PetscErrorCode A B {PetscScalar _Val = _val; return A C;} 310 311 /*MC 312 PetscPolymorphicFunction - allows defining a C++ polymorphic version of 313 a PETSc function that remove certain optional arguments for a simplier user interface 314 and returns the computed value (istead of an error code) 315 316 Synopsis: 317 PetscPolymorphicFunction(Functionname,(arguments of C++ function),(arguments of C function),return type,return variable name) 318 319 Not collective 320 321 Level: developer 322 323 Example: 324 PetscPolymorphicFunction(VecNorm,(Vec x,NormType t),(x,t,&r),PetscReal,r) generates the new routine 325 PetscReal VecNorm(Vec x,NormType t) = {PetscReal r; VecNorm(x,t,&r); return r;} 326 327 .seealso: PetscPolymorphicSubroutine() 328 329 M*/ 330 #define PetscPolymorphicFunction(A,B,C,D,E) PETSC_STATIC_INLINE D A B {D E; A C;return E;} 331 332 #else 333 #define PetscPolymorphicSubroutine(A,B,C) 334 #define PetscPolymorphicScalar(A,B,C) 335 #define PetscPolymorphicFunction(A,B,C,D,E) 336 #endif 337 338 /*MC 339 PetscUnlikely - hints the compiler that the given condition is usually FALSE 340 341 Synopsis: 342 PetscBool PetscUnlikely(PetscBool cond) 343 344 Not Collective 345 346 Input Parameters: 347 . cond - condition or expression 348 349 Note: This returns the same truth value, it is only a hint to compilers that the resulting 350 branch is unlikely. 351 352 Level: advanced 353 354 .seealso: PetscLikely(), CHKERRQ 355 M*/ 356 357 /*MC 358 PetscLikely - hints the compiler that the given condition is usually TRUE 359 360 Synopsis: 361 PetscBool PetscUnlikely(PetscBool cond) 362 363 Not Collective 364 365 Input Parameters: 366 . cond - condition or expression 367 368 Note: This returns the same truth value, it is only a hint to compilers that the resulting 369 branch is likely. 370 371 Level: advanced 372 373 .seealso: PetscUnlikely() 374 M*/ 375 #if defined(PETSC_HAVE_BUILTIN_EXPECT) 376 # define PetscUnlikely(cond) __builtin_expect(!!(cond),0) 377 # define PetscLikely(cond) __builtin_expect(!!(cond),1) 378 #else 379 # define PetscUnlikely(cond) (cond) 380 # define PetscLikely(cond) (cond) 381 #endif 382 383 /* 384 Defines some elementary mathematics functions and constants. 385 */ 386 #include "petscmath.h" 387 388 /* 389 Declare extern C stuff after including external header files 390 */ 391 392 PETSC_EXTERN_CXX_BEGIN 393 394 /* 395 Basic PETSc constants 396 */ 397 398 /*E 399 PetscBool - Logical variable. Actually an int in C and a logical in Fortran. 400 401 Level: beginner 402 403 Developer Note: Why have PetscBool , why not use bool in C? The problem is that K and R C, C99 and C++ all have different mechanisms for 404 boolean values. It is not easy to have a simple macro that that will work properly in all circumstances with all three mechanisms. 405 406 E*/ 407 typedef enum { PETSC_FALSE,PETSC_TRUE } PetscBool; 408 extern const char *PetscBools[]; 409 410 /*E 411 PetscCopyMode - Determines how an array passed to certain functions is copied or retained 412 413 Level: beginner 414 415 $ PETSC_COPY_VALUES - the array values are copied into new space, the user is free to reuse or delete the passed in array 416 $ PETSC_OWN_POINTER - the array values are NOT copied, the object takes ownership of the array and will free it later, the user cannot change or 417 $ delete the array. The array MUST have been obtained with PetscMalloc(). Hence this mode cannot be used in Fortran. 418 $ PETSC_USE_POINTER - the array values are NOT copied, the object uses the array but does NOT take ownership of the array. The user cannot use 419 the array but the user must delete the array after the object is destroyed. 420 421 E*/ 422 typedef enum { PETSC_COPY_VALUES, PETSC_OWN_POINTER, PETSC_USE_POINTER} PetscCopyMode; 423 extern const char *PetscCopyModes[]; 424 425 /*MC 426 PETSC_FALSE - False value of PetscBool 427 428 Level: beginner 429 430 Note: Zero integer 431 432 .seealso: PetscBool , PETSC_TRUE 433 M*/ 434 435 /*MC 436 PETSC_TRUE - True value of PetscBool 437 438 Level: beginner 439 440 Note: Nonzero integer 441 442 .seealso: PetscBool , PETSC_FALSE 443 M*/ 444 445 /*MC 446 PETSC_NULL - standard way of passing in a null or array or pointer 447 448 Level: beginner 449 450 Notes: accepted by many PETSc functions to not set a parameter and instead use 451 some default 452 453 This macro does not exist in Fortran; you must use PETSC_NULL_INTEGER, 454 PETSC_NULL_DOUBLE_PRECISION, PETSC_NULL_FUNCTION, PETSC_NULL_OBJECT etc 455 456 Developer Note: Why have PETSC_NULL, why not just use NULL? The problem is that NULL is defined in different include files under 457 different versions of Unix. It is tricky to insure the correct include file is always included. 458 459 .seealso: PETSC_DECIDE, PETSC_DEFAULT, PETSC_IGNORE, PETSC_DETERMINE 460 461 M*/ 462 #define PETSC_NULL 0 463 464 /*MC 465 PETSC_IGNORE - same as PETSC_NULL, means PETSc will ignore this argument 466 467 Level: beginner 468 469 Note: accepted by many PETSc functions to not set a parameter and instead use 470 some default 471 472 Fortran Notes: This macro does not exist in Fortran; you must use PETSC_NULL_INTEGER, 473 PETSC_NULL_DOUBLE_PRECISION etc 474 475 .seealso: PETSC_DECIDE, PETSC_DEFAULT, PETSC_NULL, PETSC_DETERMINE 476 477 M*/ 478 #define PETSC_IGNORE PETSC_NULL 479 480 /*MC 481 PETSC_DECIDE - standard way of passing in integer or floating point parameter 482 where you wish PETSc to use the default. 483 484 Level: beginner 485 486 .seealso: PETSC_NULL, PETSC_DEFAULT, PETSC_IGNORE, PETSC_DETERMINE 487 488 M*/ 489 #define PETSC_DECIDE -1 490 491 /*MC 492 PETSC_DETERMINE - standard way of passing in integer or floating point parameter 493 where you wish PETSc to compute the required value. 494 495 Level: beginner 496 497 498 Developer Note: I would like to use const PetscInt PETSC_DETERMINE = PETSC_DECIDE; but for 499 some reason this is not allowed by the standard even though PETSC_DECIDE is a constant value. 500 501 .seealso: PETSC_DECIDE, PETSC_DEFAULT, PETSC_IGNORE, PETSC_NULL, VecSetSizes() 502 503 M*/ 504 #define PETSC_DETERMINE PETSC_DECIDE 505 506 /*MC 507 PETSC_DEFAULT - standard way of passing in integer or floating point parameter 508 where you wish PETSc to use the default. 509 510 Level: beginner 511 512 Fortran Notes: You need to use PETSC_DEFAULT_INTEGER or PETSC_DEFAULT_DOUBLE_PRECISION. 513 514 .seealso: PETSC_DECIDE, PETSC_NULL, PETSC_IGNORE, PETSC_DETERMINE 515 516 M*/ 517 #define PETSC_DEFAULT -2 518 519 /*MC 520 PETSC_COMM_WORLD - the equivalent of the MPI_COMM_WORLD communicator which represents 521 all the processs that PETSc knows about. 522 523 Level: beginner 524 525 Notes: By default PETSC_COMM_WORLD and MPI_COMM_WORLD are identical unless you wish to 526 run PETSc on ONLY a subset of MPI_COMM_WORLD. In that case create your new (smaller) 527 communicator, call it, say comm, and set PETSC_COMM_WORLD = comm BEFORE calling 528 PetscInitialize() 529 530 .seealso: PETSC_COMM_SELF 531 532 M*/ 533 extern MPI_Comm PETSC_COMM_WORLD; 534 535 /*MC 536 PETSC_COMM_SELF - This is always MPI_COMM_SELF 537 538 Level: beginner 539 540 .seealso: PETSC_COMM_WORLD 541 542 M*/ 543 #define PETSC_COMM_SELF MPI_COMM_SELF 544 545 extern PetscBool PetscInitializeCalled; 546 extern PetscBool PetscFinalizeCalled; 547 548 extern PetscErrorCode PetscSetHelpVersionFunctions(PetscErrorCode (*)(MPI_Comm),PetscErrorCode (*)(MPI_Comm)); 549 extern PetscErrorCode PetscCommDuplicate(MPI_Comm,MPI_Comm*,int*); 550 extern PetscErrorCode PetscCommDestroy(MPI_Comm*); 551 552 /*MC 553 PetscMalloc - Allocates memory 554 555 Synopsis: 556 PetscErrorCode PetscMalloc(size_t m,void **result) 557 558 Not Collective 559 560 Input Parameter: 561 . m - number of bytes to allocate 562 563 Output Parameter: 564 . result - memory allocated 565 566 Level: beginner 567 568 Notes: Memory is always allocated at least double aligned 569 570 If you request memory of zero size it will allocate no space and assign the pointer to 0; PetscFree() will 571 properly handle not freeing the null pointer. 572 573 .seealso: PetscFree(), PetscNew() 574 575 Concepts: memory allocation 576 577 M*/ 578 #define PetscMalloc(a,b) ((a != 0) ? (*PetscTrMalloc)((a),__LINE__,PETSC_FUNCTION_NAME,__FILE__,__SDIR__,(void**)(b)) : (*(b) = 0,0) ) 579 580 /*MC 581 PetscAddrAlign - Rounds up an address to PETSC_MEMALIGN alignment 582 583 Synopsis: 584 void *PetscAddrAlign(void *addr) 585 586 Not Collective 587 588 Input Parameters: 589 . addr - address to align (any pointer type) 590 591 Level: developer 592 593 .seealso: PetscMallocAlign() 594 595 Concepts: memory allocation 596 M*/ 597 #define PetscAddrAlign(a) (void*)((((PETSC_UINTPTR_T)(a))+(PETSC_MEMALIGN-1)) & ~(PETSC_MEMALIGN-1)) 598 599 /*MC 600 PetscMalloc2 - Allocates 2 chunks of memory both aligned to PETSC_MEMALIGN 601 602 Synopsis: 603 PetscErrorCode PetscMalloc2(size_t m1,type, t1,void **r1,size_t m2,type t2,void **r2) 604 605 Not Collective 606 607 Input Parameter: 608 + m1 - number of elements to allocate in 1st chunk (may be zero) 609 . t1 - type of first memory elements 610 . m2 - number of elements to allocate in 2nd chunk (may be zero) 611 - t2 - type of second memory elements 612 613 Output Parameter: 614 + r1 - memory allocated in first chunk 615 - r2 - memory allocated in second chunk 616 617 Level: developer 618 619 .seealso: PetscFree(), PetscNew(), PetscMalloc() 620 621 Concepts: memory allocation 622 623 M*/ 624 #if defined(PETSC_USE_DEBUG) 625 #define PetscMalloc2(m1,t1,r1,m2,t2,r2) (PetscMalloc((m1)*sizeof(t1),r1) || PetscMalloc((m2)*sizeof(t2),r2)) 626 #else 627 #define PetscMalloc2(m1,t1,r1,m2,t2,r2) ((*(r2) = 0,PetscMalloc((m1)*sizeof(t1)+(m2)*sizeof(t2)+(PETSC_MEMALIGN-1),r1)) \ 628 || (*(r2) = (t2*)PetscAddrAlign(*(r1)+m1),0)) 629 #endif 630 631 /*MC 632 PetscMalloc3 - Allocates 3 chunks of memory all aligned to PETSC_MEMALIGN 633 634 Synopsis: 635 PetscErrorCode PetscMalloc3(size_t m1,type, t1,void **r1,size_t m2,type t2,void **r2,size_t m3,type t3,void **r3) 636 637 Not Collective 638 639 Input Parameter: 640 + m1 - number of elements to allocate in 1st chunk (may be zero) 641 . t1 - type of first memory elements 642 . m2 - number of elements to allocate in 2nd chunk (may be zero) 643 . t2 - type of second memory elements 644 . m3 - number of elements to allocate in 3rd chunk (may be zero) 645 - t3 - type of third memory elements 646 647 Output Parameter: 648 + r1 - memory allocated in first chunk 649 . r2 - memory allocated in second chunk 650 - r3 - memory allocated in third chunk 651 652 Level: developer 653 654 .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree3() 655 656 Concepts: memory allocation 657 658 M*/ 659 #if defined(PETSC_USE_DEBUG) 660 #define PetscMalloc3(m1,t1,r1,m2,t2,r2,m3,t3,r3) (PetscMalloc((m1)*sizeof(t1),r1) || PetscMalloc((m2)*sizeof(t2),r2) || PetscMalloc((m3)*sizeof(t3),r3)) 661 #else 662 #define PetscMalloc3(m1,t1,r1,m2,t2,r2,m3,t3,r3) ((*(r2) = 0,*(r3) = 0,PetscMalloc((m1)*sizeof(t1)+(m2)*sizeof(t2)+(m3)*sizeof(t3)+2*(PETSC_MEMALIGN-1),r1)) \ 663 || (*(r2) = (t2*)PetscAddrAlign(*(r1)+m1),*(r3) = (t3*)PetscAddrAlign(*(r2)+m2),0)) 664 #endif 665 666 /*MC 667 PetscMalloc4 - Allocates 4 chunks of memory all aligned to PETSC_MEMALIGN 668 669 Synopsis: 670 PetscErrorCode PetscMalloc4(size_t m1,type, t1,void **r1,size_t m2,type t2,void **r2,size_t m3,type t3,void **r3,size_t m4,type t4,void **r4) 671 672 Not Collective 673 674 Input Parameter: 675 + m1 - number of elements to allocate in 1st chunk (may be zero) 676 . t1 - type of first memory elements 677 . m2 - number of elements to allocate in 2nd chunk (may be zero) 678 . t2 - type of second memory elements 679 . m3 - number of elements to allocate in 3rd chunk (may be zero) 680 . t3 - type of third memory elements 681 . m4 - number of elements to allocate in 4th chunk (may be zero) 682 - t4 - type of fourth memory elements 683 684 Output Parameter: 685 + r1 - memory allocated in first chunk 686 . r2 - memory allocated in second chunk 687 . r3 - memory allocated in third chunk 688 - r4 - memory allocated in fourth chunk 689 690 Level: developer 691 692 .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree3(), PetscFree4() 693 694 Concepts: memory allocation 695 696 M*/ 697 #if defined(PETSC_USE_DEBUG) 698 #define PetscMalloc4(m1,t1,r1,m2,t2,r2,m3,t3,r3,m4,t4,r4) (PetscMalloc((m1)*sizeof(t1),r1) || PetscMalloc((m2)*sizeof(t2),r2) || PetscMalloc((m3)*sizeof(t3),r3) || PetscMalloc((m4)*sizeof(t4),r4)) 699 #else 700 #define PetscMalloc4(m1,t1,r1,m2,t2,r2,m3,t3,r3,m4,t4,r4) \ 701 ((*(r2) = 0, *(r3) = 0, *(r4) = 0,PetscMalloc((m1)*sizeof(t1)+(m2)*sizeof(t2)+(m3)*sizeof(t3)+(m4)*sizeof(t4)+3*(PETSC_MEMALIGN-1),r1)) \ 702 || (*(r2) = (t2*)PetscAddrAlign(*(r1)+m1),*(r3) = (t3*)PetscAddrAlign(*(r2)+m2),*(r4) = (t4*)PetscAddrAlign(*(r3)+m3),0)) 703 #endif 704 705 /*MC 706 PetscMalloc5 - Allocates 5 chunks of memory all aligned to PETSC_MEMALIGN 707 708 Synopsis: 709 PetscErrorCode PetscMalloc5(size_t m1,type, t1,void **r1,size_t m2,type t2,void **r2,size_t m3,type t3,void **r3,size_t m4,type t4,void **r4,size_t m5,type t5,void **r5) 710 711 Not Collective 712 713 Input Parameter: 714 + m1 - number of elements to allocate in 1st chunk (may be zero) 715 . t1 - type of first memory elements 716 . m2 - number of elements to allocate in 2nd chunk (may be zero) 717 . t2 - type of second memory elements 718 . m3 - number of elements to allocate in 3rd chunk (may be zero) 719 . t3 - type of third memory elements 720 . m4 - number of elements to allocate in 4th chunk (may be zero) 721 . t4 - type of fourth memory elements 722 . m5 - number of elements to allocate in 5th chunk (may be zero) 723 - t5 - type of fifth memory elements 724 725 Output Parameter: 726 + r1 - memory allocated in first chunk 727 . r2 - memory allocated in second chunk 728 . r3 - memory allocated in third chunk 729 . r4 - memory allocated in fourth chunk 730 - r5 - memory allocated in fifth chunk 731 732 Level: developer 733 734 .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree3(), PetscFree4(), PetscFree5() 735 736 Concepts: memory allocation 737 738 M*/ 739 #if defined(PETSC_USE_DEBUG) 740 #define PetscMalloc5(m1,t1,r1,m2,t2,r2,m3,t3,r3,m4,t4,r4,m5,t5,r5) (PetscMalloc((m1)*sizeof(t1),r1) || PetscMalloc((m2)*sizeof(t2),r2) || PetscMalloc((m3)*sizeof(t3),r3) || PetscMalloc((m4)*sizeof(t4),r4) || PetscMalloc((m5)*sizeof(t5),r5)) 741 #else 742 #define PetscMalloc5(m1,t1,r1,m2,t2,r2,m3,t3,r3,m4,t4,r4,m5,t5,r5) \ 743 ((*(r2) = 0, *(r3) = 0, *(r4) = 0,*(r5) = 0,PetscMalloc((m1)*sizeof(t1)+(m2)*sizeof(t2)+(m3)*sizeof(t3)+(m4)*sizeof(t4)+(m5)*sizeof(t5)+4*(PETSC_MEMALIGN-1),r1)) \ 744 || (*(r2) = (t2*)PetscAddrAlign(*(r1)+m1),*(r3) = (t3*)PetscAddrAlign(*(r2)+m2),*(r4) = (t4*)PetscAddrAlign(*(r3)+m3),*(r5) = (t5*)PetscAddrAlign(*(r4)+m4),0)) 745 #endif 746 747 748 /*MC 749 PetscMalloc6 - Allocates 6 chunks of memory all aligned to PETSC_MEMALIGN 750 751 Synopsis: 752 PetscErrorCode PetscMalloc6(size_t m1,type, t1,void **r1,size_t m2,type t2,void **r2,size_t m3,type t3,void **r3,size_t m4,type t4,void **r4,size_t m5,type t5,void **r5,size_t m6,type t6,void **r6) 753 754 Not Collective 755 756 Input Parameter: 757 + m1 - number of elements to allocate in 1st chunk (may be zero) 758 . t1 - type of first memory elements 759 . m2 - number of elements to allocate in 2nd chunk (may be zero) 760 . t2 - type of second memory elements 761 . m3 - number of elements to allocate in 3rd chunk (may be zero) 762 . t3 - type of third memory elements 763 . m4 - number of elements to allocate in 4th chunk (may be zero) 764 . t4 - type of fourth memory elements 765 . m5 - number of elements to allocate in 5th chunk (may be zero) 766 . t5 - type of fifth memory elements 767 . m6 - number of elements to allocate in 6th chunk (may be zero) 768 - t6 - type of sixth memory elements 769 770 Output Parameter: 771 + r1 - memory allocated in first chunk 772 . r2 - memory allocated in second chunk 773 . r3 - memory allocated in third chunk 774 . r4 - memory allocated in fourth chunk 775 . r5 - memory allocated in fifth chunk 776 - r6 - memory allocated in sixth chunk 777 778 Level: developer 779 780 .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree3(), PetscFree4(), PetscFree5(), PetscFree6() 781 782 Concepts: memory allocation 783 784 M*/ 785 #if defined(PETSC_USE_DEBUG) 786 #define PetscMalloc6(m1,t1,r1,m2,t2,r2,m3,t3,r3,m4,t4,r4,m5,t5,r5,m6,t6,r6) (PetscMalloc((m1)*sizeof(t1),r1) || PetscMalloc((m2)*sizeof(t2),r2) || PetscMalloc((m3)*sizeof(t3),r3) || PetscMalloc((m4)*sizeof(t4),r4) || PetscMalloc((m5)*sizeof(t5),r5) || PetscMalloc((m6)*sizeof(t6),r6)) 787 #else 788 #define PetscMalloc6(m1,t1,r1,m2,t2,r2,m3,t3,r3,m4,t4,r4,m5,t5,r5,m6,t6,r6) \ 789 ((*(r2) = 0, *(r3) = 0, *(r4) = 0,*(r5) = 0,*(r6) = 0,PetscMalloc((m1)*sizeof(t1)+(m2)*sizeof(t2)+(m3)*sizeof(t3)+(m4)*sizeof(t4)+(m5)*sizeof(t5)+(m6)*sizeof(t6)+5*(PETSC_MEMALIGN-1),r1)) \ 790 || (*(r2) = (t2*)PetscAddrAlign(*(r1)+m1),*(r3) = (t3*)PetscAddrAlign(*(r2)+m2),*(r4) = (t4*)PetscAddrAlign(*(r3)+m3),*(r5) = (t5*)PetscAddrAlign(*(r4)+m4),*(r6) = (t6*)PetscAddrAlign(*(r5)+m5),0)) 791 #endif 792 793 /*MC 794 PetscMalloc7 - Allocates 7 chunks of memory all aligned to PETSC_MEMALIGN 795 796 Synopsis: 797 PetscErrorCode PetscMalloc7(size_t m1,type, t1,void **r1,size_t m2,type t2,void **r2,size_t m3,type t3,void **r3,size_t m4,type t4,void **r4,size_t m5,type t5,void **r5,size_t m6,type t6,void **r6,size_t m7,type t7,void **r7) 798 799 Not Collective 800 801 Input Parameter: 802 + m1 - number of elements to allocate in 1st chunk (may be zero) 803 . t1 - type of first memory elements 804 . m2 - number of elements to allocate in 2nd chunk (may be zero) 805 . t2 - type of second memory elements 806 . m3 - number of elements to allocate in 3rd chunk (may be zero) 807 . t3 - type of third memory elements 808 . m4 - number of elements to allocate in 4th chunk (may be zero) 809 . t4 - type of fourth memory elements 810 . m5 - number of elements to allocate in 5th chunk (may be zero) 811 . t5 - type of fifth memory elements 812 . m6 - number of elements to allocate in 6th chunk (may be zero) 813 . t6 - type of sixth memory elements 814 . m7 - number of elements to allocate in 7th chunk (may be zero) 815 - t7 - type of sixth memory elements 816 817 Output Parameter: 818 + r1 - memory allocated in first chunk 819 . r2 - memory allocated in second chunk 820 . r3 - memory allocated in third chunk 821 . r4 - memory allocated in fourth chunk 822 . r5 - memory allocated in fifth chunk 823 . r6 - memory allocated in sixth chunk 824 - r7 - memory allocated in seventh chunk 825 826 Level: developer 827 828 .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree3(), PetscFree4(), PetscFree5(), PetscFree6(), PetscFree7() 829 830 Concepts: memory allocation 831 832 M*/ 833 #if defined(PETSC_USE_DEBUG) 834 #define PetscMalloc7(m1,t1,r1,m2,t2,r2,m3,t3,r3,m4,t4,r4,m5,t5,r5,m6,t6,r6,m7,t7,r7) (PetscMalloc((m1)*sizeof(t1),r1) || PetscMalloc((m2)*sizeof(t2),r2) || PetscMalloc((m3)*sizeof(t3),r3) || PetscMalloc((m4)*sizeof(t4),r4) || PetscMalloc((m5)*sizeof(t5),r5) || PetscMalloc((m6)*sizeof(t6),r6) || PetscMalloc((m7)*sizeof(t7),r7)) 835 #else 836 #define PetscMalloc7(m1,t1,r1,m2,t2,r2,m3,t3,r3,m4,t4,r4,m5,t5,r5,m6,t6,r6,m7,t7,r7) \ 837 ((*(r2) = 0, *(r3) = 0, *(r4) = 0,*(r5) = 0,*(r6) = 0,*(r7) = 0,PetscMalloc((m1)*sizeof(t1)+(m2)*sizeof(t2)+(m3)*sizeof(t3)+(m4)*sizeof(t4)+(m5)*sizeof(t5)+(m6)*sizeof(t6)+(m7)*sizeof(t7)+6*(PETSC_MEMALIGN-1),r1)) \ 838 || (*(r2) = (t2*)PetscAddrAlign(*(r1)+m1),*(r3) = (t3*)PetscAddrAlign(*(r2)+m2),*(r4) = (t4*)PetscAddrAlign(*(r3)+m3),*(r5) = (t5*)PetscAddrAlign(*(r4)+m4),*(r6) = (t6*)PetscAddrAlign(*(r5)+m5),*(r7) = (t7*)PetscAddrAlign(*(r6)+m6),0)) 839 #endif 840 841 /*MC 842 PetscNew - Allocates memory of a particular type, zeros the memory! Aligned to PETSC_MEMALIGN 843 844 Synopsis: 845 PetscErrorCode PetscNew(struct type,((type *))result) 846 847 Not Collective 848 849 Input Parameter: 850 . type - structure name of space to be allocated. Memory of size sizeof(type) is allocated 851 852 Output Parameter: 853 . result - memory allocated 854 855 Level: beginner 856 857 .seealso: PetscFree(), PetscMalloc(), PetscNewLog() 858 859 Concepts: memory allocation 860 861 M*/ 862 #define PetscNew(A,b) (PetscMalloc(sizeof(A),(b)) || PetscMemzero(*(b),sizeof(A))) 863 864 /*MC 865 PetscNewLog - Allocates memory of a particular type, zeros the memory! Aligned to PETSC_MEMALIGN. Associates the memory allocated 866 with the given object using PetscLogObjectMemory(). 867 868 Synopsis: 869 PetscErrorCode PetscNewLog(PetscObject obj,struct type,((type *))result) 870 871 Not Collective 872 873 Input Parameter: 874 + obj - object memory is logged to 875 - type - structure name of space to be allocated. Memory of size sizeof(type) is allocated 876 877 Output Parameter: 878 . result - memory allocated 879 880 Level: developer 881 882 .seealso: PetscFree(), PetscMalloc(), PetscNew(), PetscLogObjectMemory() 883 884 Concepts: memory allocation 885 886 M*/ 887 #define PetscNewLog(o,A,b) (PetscNew(A,b) || ((o) ? PetscLogObjectMemory(o,sizeof(A)) : 0)) 888 889 /*MC 890 PetscFree - Frees memory 891 892 Synopsis: 893 PetscErrorCode PetscFree(void *memory) 894 895 Not Collective 896 897 Input Parameter: 898 . memory - memory to free (the pointer is ALWAYS set to 0 upon sucess) 899 900 Level: beginner 901 902 Notes: Memory must have been obtained with PetscNew() or PetscMalloc() 903 904 .seealso: PetscNew(), PetscMalloc(), PetscFreeVoid() 905 906 Concepts: memory allocation 907 908 M*/ 909 #define PetscFree(a) ((a) && ((*PetscTrFree)((void*)(a),__LINE__,PETSC_FUNCTION_NAME,__FILE__,__SDIR__) || ((a) = 0,0))) 910 911 /*MC 912 PetscFreeVoid - Frees memory 913 914 Synopsis: 915 void PetscFreeVoid(void *memory) 916 917 Not Collective 918 919 Input Parameter: 920 . memory - memory to free 921 922 Level: beginner 923 924 Notes: This is different from PetscFree() in that no error code is returned 925 926 .seealso: PetscFree(), PetscNew(), PetscMalloc() 927 928 Concepts: memory allocation 929 930 M*/ 931 #define PetscFreeVoid(a) ((*PetscTrFree)((a),__LINE__,PETSC_FUNCTION_NAME,__FILE__,__SDIR__),(a) = 0) 932 933 934 /*MC 935 PetscFree2 - Frees 2 chunks of memory obtained with PetscMalloc2() 936 937 Synopsis: 938 PetscErrorCode PetscFree2(void *memory1,void *memory2) 939 940 Not Collective 941 942 Input Parameter: 943 + memory1 - memory to free 944 - memory2 - 2nd memory to free 945 946 Level: developer 947 948 Notes: Memory must have been obtained with PetscMalloc2() 949 950 .seealso: PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree() 951 952 Concepts: memory allocation 953 954 M*/ 955 #if defined(PETSC_USE_DEBUG) 956 #define PetscFree2(m1,m2) (PetscFree(m2) || PetscFree(m1)) 957 #else 958 #define PetscFree2(m1,m2) ((m2)=0, PetscFree(m1)) 959 #endif 960 961 /*MC 962 PetscFree3 - Frees 3 chunks of memory obtained with PetscMalloc3() 963 964 Synopsis: 965 PetscErrorCode PetscFree3(void *memory1,void *memory2,void *memory3) 966 967 Not Collective 968 969 Input Parameter: 970 + memory1 - memory to free 971 . memory2 - 2nd memory to free 972 - memory3 - 3rd memory to free 973 974 Level: developer 975 976 Notes: Memory must have been obtained with PetscMalloc3() 977 978 .seealso: PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree(), PetscMalloc3() 979 980 Concepts: memory allocation 981 982 M*/ 983 #if defined(PETSC_USE_DEBUG) 984 #define PetscFree3(m1,m2,m3) (PetscFree(m3) || PetscFree(m2) || PetscFree(m1)) 985 #else 986 #define PetscFree3(m1,m2,m3) ((m3)=0,(m2)=0,PetscFree(m1)) 987 #endif 988 989 /*MC 990 PetscFree4 - Frees 4 chunks of memory obtained with PetscMalloc4() 991 992 Synopsis: 993 PetscErrorCode PetscFree4(void *m1,void *m2,void *m3,void *m4) 994 995 Not Collective 996 997 Input Parameter: 998 + m1 - memory to free 999 . m2 - 2nd memory to free 1000 . m3 - 3rd memory to free 1001 - m4 - 4th memory to free 1002 1003 Level: developer 1004 1005 Notes: Memory must have been obtained with PetscMalloc4() 1006 1007 .seealso: PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree(), PetscMalloc3(), PetscMalloc4() 1008 1009 Concepts: memory allocation 1010 1011 M*/ 1012 #if defined(PETSC_USE_DEBUG) 1013 #define PetscFree4(m1,m2,m3,m4) (PetscFree(m4) || PetscFree(m3) || PetscFree(m2) || PetscFree(m1)) 1014 #else 1015 #define PetscFree4(m1,m2,m3,m4) ((m4)=0,(m3)=0,(m2)=0,PetscFree(m1)) 1016 #endif 1017 1018 /*MC 1019 PetscFree5 - Frees 5 chunks of memory obtained with PetscMalloc5() 1020 1021 Synopsis: 1022 PetscErrorCode PetscFree5(void *m1,void *m2,void *m3,void *m4,void *m5) 1023 1024 Not Collective 1025 1026 Input Parameter: 1027 + m1 - memory to free 1028 . m2 - 2nd memory to free 1029 . m3 - 3rd memory to free 1030 . m4 - 4th memory to free 1031 - m5 - 5th memory to free 1032 1033 Level: developer 1034 1035 Notes: Memory must have been obtained with PetscMalloc5() 1036 1037 .seealso: PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree(), PetscMalloc3(), PetscMalloc4(), PetscMalloc5() 1038 1039 Concepts: memory allocation 1040 1041 M*/ 1042 #if defined(PETSC_USE_DEBUG) 1043 #define PetscFree5(m1,m2,m3,m4,m5) (PetscFree(m5) || PetscFree(m4) || PetscFree(m3) || PetscFree(m2) || PetscFree(m1)) 1044 #else 1045 #define PetscFree5(m1,m2,m3,m4,m5) ((m5)=0,(m4)=0,(m3)=0,(m2)=0,PetscFree(m1)) 1046 #endif 1047 1048 1049 /*MC 1050 PetscFree6 - Frees 6 chunks of memory obtained with PetscMalloc6() 1051 1052 Synopsis: 1053 PetscErrorCode PetscFree6(void *m1,void *m2,void *m3,void *m4,void *m5,void *m6) 1054 1055 Not Collective 1056 1057 Input Parameter: 1058 + m1 - memory to free 1059 . m2 - 2nd memory to free 1060 . m3 - 3rd memory to free 1061 . m4 - 4th memory to free 1062 . m5 - 5th memory to free 1063 - m6 - 6th memory to free 1064 1065 1066 Level: developer 1067 1068 Notes: Memory must have been obtained with PetscMalloc6() 1069 1070 .seealso: PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree(), PetscMalloc3(), PetscMalloc4(), PetscMalloc5(), PetscMalloc6() 1071 1072 Concepts: memory allocation 1073 1074 M*/ 1075 #if defined(PETSC_USE_DEBUG) 1076 #define PetscFree6(m1,m2,m3,m4,m5,m6) (PetscFree(m6) || PetscFree(m5) || PetscFree(m4) || PetscFree(m3) || PetscFree(m2) || PetscFree(m1)) 1077 #else 1078 #define PetscFree6(m1,m2,m3,m4,m5,m6) ((m6)=0,(m5)=0,(m4)=0,(m3)=0,(m2)=0,PetscFree(m1)) 1079 #endif 1080 1081 /*MC 1082 PetscFree7 - Frees 7 chunks of memory obtained with PetscMalloc7() 1083 1084 Synopsis: 1085 PetscErrorCode PetscFree7(void *m1,void *m2,void *m3,void *m4,void *m5,void *m6,void *m7) 1086 1087 Not Collective 1088 1089 Input Parameter: 1090 + m1 - memory to free 1091 . m2 - 2nd memory to free 1092 . m3 - 3rd memory to free 1093 . m4 - 4th memory to free 1094 . m5 - 5th memory to free 1095 . m6 - 6th memory to free 1096 - m7 - 7th memory to free 1097 1098 1099 Level: developer 1100 1101 Notes: Memory must have been obtained with PetscMalloc7() 1102 1103 .seealso: PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree(), PetscMalloc3(), PetscMalloc4(), PetscMalloc5(), PetscMalloc6(), 1104 PetscMalloc7() 1105 1106 Concepts: memory allocation 1107 1108 M*/ 1109 #if defined(PETSC_USE_DEBUG) 1110 #define PetscFree7(m1,m2,m3,m4,m5,m6,m7) (PetscFree(m7) || PetscFree(m6) || PetscFree(m5) || PetscFree(m4) || PetscFree(m3) || PetscFree(m2) || PetscFree(m1)) 1111 #else 1112 #define PetscFree7(m1,m2,m3,m4,m5,m6,m7) ((m7)=0,(m6)=0,(m5)=0,(m4)=0,(m3)=0,(m2)=0,PetscFree(m1)) 1113 #endif 1114 1115 extern PetscErrorCode (*PetscTrMalloc)(size_t,int,const char[],const char[],const char[],void**); 1116 extern PetscErrorCode (*PetscTrFree)(void*,int,const char[],const char[],const char[]); 1117 extern PetscErrorCode PetscMallocSet(PetscErrorCode (*)(size_t,int,const char[],const char[],const char[],void**),PetscErrorCode (*)(void*,int,const char[],const char[],const char[])); 1118 extern PetscErrorCode PetscMallocClear(void); 1119 1120 /* 1121 Routines for tracing memory corruption/bleeding with default PETSc memory allocation 1122 */ 1123 extern PetscErrorCode PetscMallocDump(FILE *); 1124 extern PetscErrorCode PetscMallocDumpLog(FILE *); 1125 extern PetscErrorCode PetscMallocGetCurrentUsage(PetscLogDouble *); 1126 extern PetscErrorCode PetscMallocGetMaximumUsage(PetscLogDouble *); 1127 extern PetscErrorCode PetscMallocDebug(PetscBool); 1128 extern PetscErrorCode PetscMallocValidate(int,const char[],const char[],const char[]); 1129 extern PetscErrorCode PetscMallocSetDumpLog(void); 1130 1131 1132 /*E 1133 PetscDataType - Used for handling different basic data types. 1134 1135 Level: beginner 1136 1137 Developer comment: It would be nice if we could always just use MPI Datatypes, why can we not? 1138 1139 .seealso: PetscBinaryRead(), PetscBinaryWrite(), PetscDataTypeToMPIDataType(), 1140 PetscDataTypeGetSize() 1141 1142 E*/ 1143 typedef enum {PETSC_INT = 0,PETSC_DOUBLE = 1,PETSC_COMPLEX = 2, PETSC_LONG = 3 ,PETSC_SHORT = 4,PETSC_FLOAT = 5, 1144 PETSC_CHAR = 6,PETSC_BIT_LOGICAL = 7,PETSC_ENUM = 8,PETSC_BOOL=9, PETSC_LONG_DOUBLE = 10} PetscDataType; 1145 extern const char *PetscDataTypes[]; 1146 1147 #if defined(PETSC_USE_COMPLEX) 1148 #define PETSC_SCALAR PETSC_COMPLEX 1149 #else 1150 #if defined(PETSC_USE_REAL_SINGLE) 1151 #define PETSC_SCALAR PETSC_FLOAT 1152 #else 1153 #define PETSC_SCALAR PETSC_DOUBLE 1154 #endif 1155 #endif 1156 #if defined(PETSC_USE_REAL_SINGLE) 1157 #define PETSC_REAL PETSC_FLOAT 1158 #else 1159 #define PETSC_REAL PETSC_DOUBLE 1160 #endif 1161 #define PETSC_FORTRANADDR PETSC_LONG 1162 1163 extern PetscErrorCode PetscDataTypeToMPIDataType(PetscDataType,MPI_Datatype*); 1164 extern PetscErrorCode PetscMPIDataTypeToPetscDataType(MPI_Datatype,PetscDataType*); 1165 extern PetscErrorCode PetscDataTypeGetSize(PetscDataType,size_t*); 1166 1167 /* 1168 Basic memory and string operations. These are usually simple wrappers 1169 around the basic Unix system calls, but a few of them have additional 1170 functionality and/or error checking. 1171 */ 1172 extern PetscErrorCode PetscBitMemcpy(void*,PetscInt,const void*,PetscInt,PetscInt,PetscDataType); 1173 extern PetscErrorCode PetscMemmove(void*,void *,size_t); 1174 extern PetscErrorCode PetscMemcmp(const void*,const void*,size_t,PetscBool *); 1175 extern PetscErrorCode PetscStrlen(const char[],size_t*); 1176 extern PetscErrorCode PetscStrToArray(const char[],int*,char ***); 1177 extern PetscErrorCode PetscStrToArrayDestroy(int,char **); 1178 extern PetscErrorCode PetscStrcmp(const char[],const char[],PetscBool *); 1179 extern PetscErrorCode PetscStrgrt(const char[],const char[],PetscBool *); 1180 extern PetscErrorCode PetscStrcasecmp(const char[],const char[],PetscBool *); 1181 extern PetscErrorCode PetscStrncmp(const char[],const char[],size_t,PetscBool *); 1182 extern PetscErrorCode PetscStrcpy(char[],const char[]); 1183 extern PetscErrorCode PetscStrcat(char[],const char[]); 1184 extern PetscErrorCode PetscStrncat(char[],const char[],size_t); 1185 extern PetscErrorCode PetscStrncpy(char[],const char[],size_t); 1186 extern PetscErrorCode PetscStrchr(const char[],char,char *[]); 1187 extern PetscErrorCode PetscStrtolower(char[]); 1188 extern PetscErrorCode PetscStrrchr(const char[],char,char *[]); 1189 extern PetscErrorCode PetscStrstr(const char[],const char[],char *[]); 1190 extern PetscErrorCode PetscStrrstr(const char[],const char[],char *[]); 1191 extern PetscErrorCode PetscStrendswith(const char[],const char[],PetscBool*); 1192 extern PetscErrorCode PetscStrendswithwhich(const char[],const char *const*,PetscInt*); 1193 extern PetscErrorCode PetscStrallocpy(const char[],char *[]); 1194 extern PetscErrorCode PetscStrreplace(MPI_Comm,const char[],char[],size_t); 1195 1196 /*S 1197 PetscToken - 'Token' used for managing tokenizing strings 1198 1199 Level: intermediate 1200 1201 .seealso: PetscTokenCreate(), PetscTokenFind(), PetscTokenDestroy() 1202 S*/ 1203 typedef struct _p_PetscToken* PetscToken; 1204 1205 extern PetscErrorCode PetscTokenCreate(const char[],const char,PetscToken*); 1206 extern PetscErrorCode PetscTokenFind(PetscToken,char *[]); 1207 extern PetscErrorCode PetscTokenDestroy(PetscToken*); 1208 1209 /* 1210 These are MPI operations for MPI_Allreduce() etc 1211 */ 1212 extern MPI_Op PetscMaxSum_Op; 1213 #if (defined(PETSC_USE_COMPLEX) && !defined(PETSC_HAVE_MPI_C_DOUBLE_COMPLEX)) || defined(PETSC_USE_REAL___FLOAT128) 1214 extern MPI_Op MPIU_SUM; 1215 #else 1216 #define MPIU_SUM MPI_SUM 1217 #endif 1218 #if defined(PETSC_USE_REAL___FLOAT128) 1219 extern MPI_Op MPIU_MAX; 1220 extern MPI_Op MPIU_MIN; 1221 #else 1222 #define MPIU_MAX MPI_MAX 1223 #define MPIU_MIN MPI_MIN 1224 #endif 1225 extern PetscErrorCode PetscMaxSum(MPI_Comm,const PetscInt[],PetscInt*,PetscInt*); 1226 1227 extern PetscErrorCode MPILong_Send(void*,PetscInt,MPI_Datatype,PetscMPIInt,PetscMPIInt,MPI_Comm); 1228 extern PetscErrorCode MPILong_Recv(void*,PetscInt,MPI_Datatype,PetscMPIInt,PetscMPIInt,MPI_Comm); 1229 1230 /*S 1231 PetscObject - any PETSc object, PetscViewer, Mat, Vec, KSP etc 1232 1233 Level: beginner 1234 1235 Note: This is the base class from which all objects appear. 1236 1237 .seealso: PetscObjectDestroy(), PetscObjectView(), PetscObjectGetName(), PetscObjectSetName(), PetscObjectReference(), PetscObjectDereferenc() 1238 S*/ 1239 typedef struct _p_PetscObject* PetscObject; 1240 1241 /*S 1242 PetscFList - Linked list of functions, possibly stored in dynamic libraries, accessed 1243 by string name 1244 1245 Level: advanced 1246 1247 .seealso: PetscFListAdd(), PetscFListDestroy() 1248 S*/ 1249 typedef struct _n_PetscFList *PetscFList; 1250 1251 /*E 1252 PetscFileMode - Access mode for a file. 1253 1254 Level: beginner 1255 1256 FILE_MODE_READ - open a file at its beginning for reading 1257 1258 FILE_MODE_WRITE - open a file at its beginning for writing (will create if the file does not exist) 1259 1260 FILE_MODE_APPEND - open a file at end for writing 1261 1262 FILE_MODE_UPDATE - open a file for updating, meaning for reading and writing 1263 1264 FILE_MODE_APPEND_UPDATE - open a file for updating, meaning for reading and writing, at the end 1265 1266 .seealso: PetscViewerFileSetMode() 1267 E*/ 1268 typedef enum {FILE_MODE_READ, FILE_MODE_WRITE, FILE_MODE_APPEND, FILE_MODE_UPDATE, FILE_MODE_APPEND_UPDATE} PetscFileMode; 1269 1270 #include "petscviewer.h" 1271 #include "petscoptions.h" 1272 1273 #define PETSC_SMALLEST_CLASSID 1211211 1274 extern PetscClassId PETSC_LARGEST_CLASSID; 1275 extern PetscClassId PETSC_OBJECT_CLASSID; 1276 extern PetscErrorCode PetscClassIdRegister(const char[],PetscClassId *); 1277 1278 /* 1279 Routines that get memory usage information from the OS 1280 */ 1281 extern PetscErrorCode PetscMemoryGetCurrentUsage(PetscLogDouble *); 1282 extern PetscErrorCode PetscMemoryGetMaximumUsage(PetscLogDouble *); 1283 extern PetscErrorCode PetscMemorySetGetMaximumUsage(void); 1284 extern PetscErrorCode PetscMemoryShowUsage(PetscViewer,const char[]); 1285 1286 extern PetscErrorCode PetscInfoAllow(PetscBool ,const char []); 1287 extern PetscErrorCode PetscGetTime(PetscLogDouble*); 1288 extern PetscErrorCode PetscGetCPUTime(PetscLogDouble*); 1289 extern PetscErrorCode PetscSleep(PetscReal); 1290 1291 /* 1292 Initialization of PETSc 1293 */ 1294 extern PetscErrorCode PetscInitialize(int*,char***,const char[],const char[]); 1295 PetscPolymorphicSubroutine(PetscInitialize,(int *argc,char ***args),(argc,args,PETSC_NULL,PETSC_NULL)) 1296 extern PetscErrorCode PetscInitializeNoArguments(void); 1297 extern PetscErrorCode PetscInitialized(PetscBool *); 1298 extern PetscErrorCode PetscFinalized(PetscBool *); 1299 extern PetscErrorCode PetscFinalize(void); 1300 extern PetscErrorCode PetscInitializeFortran(void); 1301 extern PetscErrorCode PetscGetArgs(int*,char ***); 1302 extern PetscErrorCode PetscGetArguments(char ***); 1303 extern PetscErrorCode PetscFreeArguments(char **); 1304 1305 extern PetscErrorCode PetscEnd(void); 1306 extern PetscErrorCode PetscSysInitializePackage(const char[]); 1307 1308 extern MPI_Comm PETSC_COMM_LOCAL_WORLD; 1309 extern PetscErrorCode PetscHMPIMerge(PetscMPIInt,PetscErrorCode (*)(void*),void*); 1310 extern PetscErrorCode PetscHMPISpawn(PetscMPIInt); 1311 extern PetscErrorCode PetscHMPIFinalize(void); 1312 extern PetscErrorCode PetscHMPIRun(MPI_Comm,PetscErrorCode (*)(MPI_Comm,void *),void*); 1313 extern PetscErrorCode PetscHMPIRunCtx(MPI_Comm,PetscErrorCode (*)(MPI_Comm,void*,void *),void*); 1314 extern PetscErrorCode PetscHMPIFree(MPI_Comm,void*); 1315 extern PetscErrorCode PetscHMPIMalloc(MPI_Comm,size_t,void**); 1316 1317 extern PetscErrorCode PetscPythonInitialize(const char[],const char[]); 1318 extern PetscErrorCode PetscPythonFinalize(void); 1319 extern PetscErrorCode PetscPythonPrintError(void); 1320 extern PetscErrorCode PetscPythonMonitorSet(PetscObject,const char[]); 1321 1322 /* 1323 These are so that in extern C code we can caste function pointers to non-extern C 1324 function pointers. Since the regular C++ code expects its function pointers to be 1325 C++. 1326 */ 1327 typedef void (**PetscVoidStarFunction)(void); 1328 typedef void (*PetscVoidFunction)(void); 1329 typedef PetscErrorCode (*PetscErrorCodeFunction)(void); 1330 1331 /* 1332 PetscTryMethod - Queries an object for a method, if it exists then calls it. 1333 These are intended to be used only inside PETSc functions. 1334 1335 Level: developer 1336 1337 .seealso: PetscUseMethod() 1338 */ 1339 #define PetscTryMethod(obj,A,B,C) \ 1340 0;{ PetscErrorCode (*f)B, __ierr; \ 1341 __ierr = PetscObjectQueryFunction((PetscObject)obj,A,(PetscVoidStarFunction)&f);CHKERRQ(__ierr); \ 1342 if (f) {__ierr = (*f)C;CHKERRQ(__ierr);}\ 1343 } 1344 1345 /* 1346 PetscUseMethod - Queries an object for a method, if it exists then calls it, otherwise generates an error. 1347 These are intended to be used only inside PETSc functions. 1348 1349 Level: developer 1350 1351 .seealso: PetscTryMethod() 1352 */ 1353 #define PetscUseMethod(obj,A,B,C) \ 1354 0;{ PetscErrorCode (*f)B, __ierr; \ 1355 __ierr = PetscObjectQueryFunction((PetscObject)obj,A,(PetscVoidStarFunction)&f);CHKERRQ(__ierr); \ 1356 if (f) {__ierr = (*f)C;CHKERRQ(__ierr);}\ 1357 else SETERRQ1(((PetscObject)obj)->comm,PETSC_ERR_SUP,"Cannot locate function %s in object",A); \ 1358 } 1359 1360 /* 1361 Functions that can act on any PETSc object. 1362 */ 1363 extern PetscErrorCode PetscObjectDestroy(PetscObject*); 1364 extern PetscErrorCode PetscObjectGetComm(PetscObject,MPI_Comm *); 1365 extern PetscErrorCode PetscObjectGetClassId(PetscObject,PetscClassId *); 1366 extern PetscErrorCode PetscObjectGetClassName(PetscObject,const char *[]); 1367 extern PetscErrorCode PetscObjectSetType(PetscObject,const char []); 1368 extern PetscErrorCode PetscObjectSetPrecision(PetscObject,PetscPrecision); 1369 extern PetscErrorCode PetscObjectGetType(PetscObject,const char *[]); 1370 extern PetscErrorCode PetscObjectSetName(PetscObject,const char[]); 1371 extern PetscErrorCode PetscObjectGetName(PetscObject,const char*[]); 1372 extern PetscErrorCode PetscObjectPrintClassNamePrefixType(PetscObject,PetscViewer,const char[]); 1373 extern PetscErrorCode PetscObjectSetTabLevel(PetscObject,PetscInt); 1374 extern PetscErrorCode PetscObjectGetTabLevel(PetscObject,PetscInt*); 1375 extern PetscErrorCode PetscObjectIncrementTabLevel(PetscObject,PetscObject,PetscInt); 1376 extern PetscErrorCode PetscObjectReference(PetscObject); 1377 extern PetscErrorCode PetscObjectGetReference(PetscObject,PetscInt*); 1378 extern PetscErrorCode PetscObjectDereference(PetscObject); 1379 extern PetscErrorCode PetscObjectGetNewTag(PetscObject,PetscMPIInt *); 1380 extern PetscErrorCode PetscObjectView(PetscObject,PetscViewer); 1381 extern PetscErrorCode PetscObjectCompose(PetscObject,const char[],PetscObject); 1382 extern PetscErrorCode PetscObjectRemoveReference(PetscObject,const char[]); 1383 extern PetscErrorCode PetscObjectQuery(PetscObject,const char[],PetscObject *); 1384 extern PetscErrorCode PetscObjectComposeFunction(PetscObject,const char[],const char[],void (*)(void)); 1385 extern PetscErrorCode PetscObjectSetFromOptions(PetscObject); 1386 extern PetscErrorCode PetscObjectSetUp(PetscObject); 1387 extern PetscErrorCode PetscCommGetNewTag(MPI_Comm,PetscMPIInt *); 1388 extern PetscErrorCode PetscObjectAddOptionsHandler(PetscObject,PetscErrorCode (*)(PetscObject,void*),PetscErrorCode (*)(PetscObject,void*),void*); 1389 extern PetscErrorCode PetscObjectProcessOptionsHandlers(PetscObject); 1390 extern PetscErrorCode PetscObjectDestroyOptionsHandlers(PetscObject); 1391 1392 /*MC 1393 PetscObjectComposeFunctionDynamic - Associates a function with a given PETSc object. 1394 1395 Synopsis: 1396 PetscErrorCode PetscObjectComposeFunctionDynamic(PetscObject obj,const char name[],const char fname[],void *ptr) 1397 1398 Logically Collective on PetscObject 1399 1400 Input Parameters: 1401 + obj - the PETSc object; this must be cast with a (PetscObject), for example, 1402 PetscObjectCompose((PetscObject)mat,...); 1403 . name - name associated with the child function 1404 . fname - name of the function 1405 - ptr - function pointer (or PETSC_NULL if using dynamic libraries) 1406 1407 Level: advanced 1408 1409 1410 Notes: 1411 To remove a registered routine, pass in a PETSC_NULL rname and fnc(). 1412 1413 PetscObjectComposeFunctionDynamic() can be used with any PETSc object (such as 1414 Mat, Vec, KSP, SNES, etc.) or any user-provided object. 1415 1416 The composed function must be wrapped in a EXTERN_C_BEGIN/END for this to 1417 work in C++/complex with dynamic link libraries (./configure options --with-shared-libraries --with-dynamic-loading) 1418 enabled. 1419 1420 Concepts: objects^composing functions 1421 Concepts: composing functions 1422 Concepts: functions^querying 1423 Concepts: objects^querying 1424 Concepts: querying objects 1425 1426 .seealso: PetscObjectQueryFunction() 1427 M*/ 1428 #if defined(PETSC_USE_DYNAMIC_LIBRARIES) 1429 #define PetscObjectComposeFunctionDynamic(a,b,c,d) PetscObjectComposeFunction(a,b,c,0) 1430 #else 1431 #define PetscObjectComposeFunctionDynamic(a,b,c,d) PetscObjectComposeFunction(a,b,c,(PetscVoidFunction)(d)) 1432 #endif 1433 1434 extern PetscErrorCode PetscObjectQueryFunction(PetscObject,const char[],void (**)(void)); 1435 extern PetscErrorCode PetscObjectSetOptionsPrefix(PetscObject,const char[]); 1436 extern PetscErrorCode PetscObjectAppendOptionsPrefix(PetscObject,const char[]); 1437 extern PetscErrorCode PetscObjectPrependOptionsPrefix(PetscObject,const char[]); 1438 extern PetscErrorCode PetscObjectGetOptionsPrefix(PetscObject,const char*[]); 1439 extern PetscErrorCode PetscObjectAMSPublish(PetscObject); 1440 extern PetscErrorCode PetscObjectUnPublish(PetscObject); 1441 extern PetscErrorCode PetscObjectChangeTypeName(PetscObject,const char[]); 1442 extern PetscErrorCode PetscObjectRegisterDestroy(PetscObject); 1443 extern PetscErrorCode PetscObjectRegisterDestroyAll(void); 1444 extern PetscErrorCode PetscObjectName(PetscObject); 1445 extern PetscErrorCode PetscTypeCompare(PetscObject,const char[],PetscBool *); 1446 extern PetscErrorCode PetscTypeCompareAny(PetscObject,PetscBool*,const char[],...); 1447 extern PetscErrorCode PetscRegisterFinalize(PetscErrorCode (*)(void)); 1448 extern PetscErrorCode PetscRegisterFinalizeAll(void); 1449 1450 /* 1451 Defines PETSc error handling. 1452 */ 1453 #include "petscerror.h" 1454 1455 /*S 1456 PetscOList - Linked list of PETSc objects, each accessable by string name 1457 1458 Level: developer 1459 1460 Notes: Used by PetscObjectCompose() and PetscObjectQuery() 1461 1462 .seealso: PetscOListAdd(), PetscOListDestroy(), PetscOListFind(), PetscObjectCompose(), PetscObjectQuery() 1463 S*/ 1464 typedef struct _n_PetscOList *PetscOList; 1465 1466 extern PetscErrorCode PetscOListDestroy(PetscOList*); 1467 extern PetscErrorCode PetscOListFind(PetscOList,const char[],PetscObject*); 1468 extern PetscErrorCode PetscOListReverseFind(PetscOList,PetscObject,char**,PetscBool*); 1469 extern PetscErrorCode PetscOListAdd(PetscOList *,const char[],PetscObject); 1470 extern PetscErrorCode PetscOListRemoveReference(PetscOList *,const char[]); 1471 extern PetscErrorCode PetscOListDuplicate(PetscOList,PetscOList *); 1472 1473 /* 1474 Dynamic library lists. Lists of names of routines in objects or in dynamic 1475 link libraries that will be loaded as needed. 1476 */ 1477 extern PetscErrorCode PetscFListAdd(PetscFList*,const char[],const char[],void (*)(void)); 1478 extern PetscErrorCode PetscFListDestroy(PetscFList*); 1479 extern PetscErrorCode PetscFListFind(PetscFList,MPI_Comm,const char[],PetscBool,void (**)(void)); 1480 extern PetscErrorCode PetscFListPrintTypes(MPI_Comm,FILE*,const char[],const char[],const char[],const char[],PetscFList,const char[]); 1481 #if defined(PETSC_USE_DYNAMIC_LIBRARIES) 1482 #define PetscFListAddDynamic(a,b,p,c) PetscFListAdd(a,b,p,0) 1483 #else 1484 #define PetscFListAddDynamic(a,b,p,c) PetscFListAdd(a,b,p,(void (*)(void))c) 1485 #endif 1486 extern PetscErrorCode PetscFListDuplicate(PetscFList,PetscFList *); 1487 extern PetscErrorCode PetscFListView(PetscFList,PetscViewer); 1488 extern PetscErrorCode PetscFListConcat(const char [],const char [],char []); 1489 extern PetscErrorCode PetscFListGet(PetscFList,char ***,int*); 1490 1491 /*S 1492 PetscDLLibrary - Linked list of dynamics libraries to search for functions 1493 1494 Level: advanced 1495 1496 --with-shared-libraries --with-dynamic-loading must be used with ./configure to use dynamic libraries 1497 1498 .seealso: PetscDLLibraryOpen() 1499 S*/ 1500 typedef struct _n_PetscDLLibrary *PetscDLLibrary; 1501 extern PetscDLLibrary DLLibrariesLoaded; 1502 extern PetscErrorCode PetscDLLibraryAppend(MPI_Comm,PetscDLLibrary *,const char[]); 1503 extern PetscErrorCode PetscDLLibraryPrepend(MPI_Comm,PetscDLLibrary *,const char[]); 1504 extern PetscErrorCode PetscDLLibrarySym(MPI_Comm,PetscDLLibrary *,const char[],const char[],void **); 1505 extern PetscErrorCode PetscDLLibraryPrintPath(PetscDLLibrary); 1506 extern PetscErrorCode PetscDLLibraryRetrieve(MPI_Comm,const char[],char *,size_t,PetscBool *); 1507 extern PetscErrorCode PetscDLLibraryOpen(MPI_Comm,const char[],PetscDLLibrary *); 1508 extern PetscErrorCode PetscDLLibraryClose(PetscDLLibrary); 1509 extern PetscErrorCode PetscDLLibraryCCAAppend(MPI_Comm,PetscDLLibrary *,const char[]); 1510 1511 /* 1512 PetscFwk support. Needs to be documented. 1513 Logically it is an extension of PetscDLLXXX, PetscObjectCompose, etc. 1514 */ 1515 #include "petscfwk.h" 1516 1517 /* 1518 Useful utility routines 1519 */ 1520 extern PetscErrorCode PetscSplitOwnership(MPI_Comm,PetscInt*,PetscInt*); 1521 extern PetscErrorCode PetscSplitOwnershipBlock(MPI_Comm,PetscInt,PetscInt*,PetscInt*); 1522 extern PetscErrorCode PetscSequentialPhaseBegin(MPI_Comm,PetscMPIInt); 1523 PetscPolymorphicSubroutine(PetscSequentialPhaseBegin,(MPI_Comm comm),(comm,1)) 1524 PetscPolymorphicSubroutine(PetscSequentialPhaseBegin,(void),(PETSC_COMM_WORLD,1)) 1525 extern PetscErrorCode PetscSequentialPhaseEnd(MPI_Comm,PetscMPIInt); 1526 PetscPolymorphicSubroutine(PetscSequentialPhaseEnd,(MPI_Comm comm),(comm,1)) 1527 PetscPolymorphicSubroutine(PetscSequentialPhaseEnd,(void),(PETSC_COMM_WORLD,1)) 1528 extern PetscErrorCode PetscBarrier(PetscObject); 1529 extern PetscErrorCode PetscMPIDump(FILE*); 1530 1531 /* 1532 PetscNot - negates a logical type value and returns result as a PetscBool 1533 1534 Notes: This is useful in cases like 1535 $ int *a; 1536 $ PetscBool flag = PetscNot(a) 1537 where !a does not return a PetscBool because we cannot provide a cast from int to PetscBool in C. 1538 */ 1539 #define PetscNot(a) ((a) ? PETSC_FALSE : PETSC_TRUE) 1540 1541 /* 1542 Defines basic graphics available from PETSc. 1543 */ 1544 #include "petscdraw.h" 1545 1546 /* 1547 Defines the base data structures for all PETSc objects 1548 */ 1549 #include "private/petscimpl.h" 1550 1551 1552 /*MC 1553 PetscErrorPrintf - Prints error messages. 1554 1555 Synopsis: 1556 PetscErrorCode (*PetscErrorPrintf)(const char format[],...); 1557 1558 Not Collective 1559 1560 Input Parameters: 1561 . format - the usual printf() format string 1562 1563 Options Database Keys: 1564 + -error_output_stdout - cause error messages to be printed to stdout instead of the 1565 (default) stderr 1566 - -error_output_none to turn off all printing of error messages (does not change the way the 1567 error is handled.) 1568 1569 Notes: Use 1570 $ PetscErrorPrintf = PetscErrorPrintfNone; to turn off all printing of error messages (does not change the way the 1571 $ error is handled.) and 1572 $ PetscErrorPrintf = PetscErrorPrintfDefault; to turn it back on 1573 $ of you can use your own function 1574 1575 Use 1576 PETSC_STDERR = FILE* obtained from a file open etc. to have stderr printed to the file. 1577 PETSC_STDOUT = FILE* obtained from a file open etc. to have stdout printed to the file. 1578 1579 Use 1580 PetscPushErrorHandler() to provide your own error handler that determines what kind of messages to print 1581 1582 Level: developer 1583 1584 Fortran Note: 1585 This routine is not supported in Fortran. 1586 1587 Concepts: error messages^printing 1588 Concepts: printing^error messages 1589 1590 .seealso: PetscFPrintf(), PetscSynchronizedPrintf(), PetscHelpPrintf(), PetscPrintf(), PetscErrorHandlerPush(), PetscVFPrintf(), PetscHelpPrintf() 1591 M*/ 1592 extern PetscErrorCode (*PetscErrorPrintf)(const char[],...); 1593 1594 /*MC 1595 PetscHelpPrintf - Prints help messages. 1596 1597 Synopsis: 1598 PetscErrorCode (*PetscHelpPrintf)(const char format[],...); 1599 1600 Not Collective 1601 1602 Input Parameters: 1603 . format - the usual printf() format string 1604 1605 Level: developer 1606 1607 Fortran Note: 1608 This routine is not supported in Fortran. 1609 1610 Concepts: help messages^printing 1611 Concepts: printing^help messages 1612 1613 .seealso: PetscFPrintf(), PetscSynchronizedPrintf(), PetscErrorPrintf() 1614 M*/ 1615 extern PetscErrorCode (*PetscHelpPrintf)(MPI_Comm,const char[],...); 1616 1617 /* 1618 Defines PETSc profiling. 1619 */ 1620 #include "petsclog.h" 1621 1622 /* 1623 For locking, unlocking and destroying AMS memories associated with PETSc objects. ams.h is included in petscviewer.h 1624 */ 1625 #if defined(PETSC_HAVE_AMS) 1626 extern PetscBool PetscAMSPublishAll; 1627 #define PetscObjectTakeAccess(obj) ((((PetscObject)(obj))->amem == -1) ? 0 : AMS_Memory_take_access(((PetscObject)(obj))->amem)) 1628 #define PetscObjectGrantAccess(obj) ((((PetscObject)(obj))->amem == -1) ? 0 : AMS_Memory_grant_access(((PetscObject)(obj))->amem)) 1629 #define PetscObjectDepublish(obj) ((((PetscObject)(obj))->amem == -1) ? 0 : AMS_Memory_destroy(((PetscObject)(obj))->amem));((PetscObject)(obj))->amem = -1; 1630 #else 1631 #define PetscObjectTakeAccess(obj) 0 1632 #define PetscObjectGrantAccess(obj) 0 1633 #define PetscObjectDepublish(obj) 0 1634 #endif 1635 1636 /* 1637 Simple PETSc parallel IO for ASCII printing 1638 */ 1639 extern PetscErrorCode PetscFixFilename(const char[],char[]); 1640 extern PetscErrorCode PetscFOpen(MPI_Comm,const char[],const char[],FILE**); 1641 extern PetscErrorCode PetscFClose(MPI_Comm,FILE*); 1642 extern PetscErrorCode PetscFPrintf(MPI_Comm,FILE*,const char[],...); 1643 extern PetscErrorCode PetscPrintf(MPI_Comm,const char[],...); 1644 extern PetscErrorCode PetscSNPrintf(char*,size_t,const char [],...); 1645 extern PetscErrorCode PetscSNPrintfCount(char*,size_t,const char [],size_t*,...); 1646 1647 1648 1649 /* These are used internally by PETSc ASCII IO routines*/ 1650 #include <stdarg.h> 1651 extern PetscErrorCode PetscVSNPrintf(char*,size_t,const char[],size_t*,va_list); 1652 extern PetscErrorCode (*PetscVFPrintf)(FILE*,const char[],va_list); 1653 extern PetscErrorCode PetscVFPrintfDefault(FILE*,const char[],va_list); 1654 extern PetscErrorCode PetscVFPrintfRegress(FILE*,const char *,va_list); 1655 extern PetscErrorCode PetscVFPrintfRegressSetUp(MPI_Comm,const char *); 1656 1657 #if defined(PETSC_HAVE_MATLAB_ENGINE) 1658 extern PetscErrorCode PetscVFPrintf_Matlab(FILE*,const char[],va_list); 1659 #endif 1660 1661 extern PetscErrorCode PetscErrorPrintfDefault(const char [],...); 1662 extern PetscErrorCode PetscErrorPrintfNone(const char [],...); 1663 extern PetscErrorCode PetscHelpPrintfDefault(MPI_Comm,const char [],...); 1664 1665 #if defined(PETSC_HAVE_POPEN) 1666 extern PetscErrorCode PetscPOpen(MPI_Comm,const char[],const char[],const char[],FILE **); 1667 extern PetscErrorCode PetscPClose(MPI_Comm,FILE*); 1668 #endif 1669 1670 extern PetscErrorCode PetscSynchronizedPrintf(MPI_Comm,const char[],...); 1671 extern PetscErrorCode PetscSynchronizedFPrintf(MPI_Comm,FILE*,const char[],...); 1672 extern PetscErrorCode PetscSynchronizedFlush(MPI_Comm); 1673 extern PetscErrorCode PetscSynchronizedFGets(MPI_Comm,FILE*,size_t,char[]); 1674 extern PetscErrorCode PetscStartMatlab(MPI_Comm,const char[],const char[],FILE**); 1675 extern PetscErrorCode PetscStartJava(MPI_Comm,const char[],const char[],FILE**); 1676 extern PetscErrorCode PetscGetPetscDir(const char*[]); 1677 1678 extern PetscErrorCode PetscPopUpSelect(MPI_Comm,const char*,const char*,int,const char**,int*); 1679 1680 /*S 1681 PetscContainer - Simple PETSc object that contains a pointer to any required data 1682 1683 Level: advanced 1684 1685 .seealso: PetscObject, PetscContainerCreate() 1686 S*/ 1687 extern PetscClassId PETSC_CONTAINER_CLASSID; 1688 typedef struct _p_PetscContainer* PetscContainer; 1689 extern PetscErrorCode PetscContainerGetPointer(PetscContainer,void **); 1690 extern PetscErrorCode PetscContainerSetPointer(PetscContainer,void *); 1691 extern PetscErrorCode PetscContainerDestroy(PetscContainer*); 1692 extern PetscErrorCode PetscContainerCreate(MPI_Comm,PetscContainer *); 1693 extern PetscErrorCode PetscContainerSetUserDestroy(PetscContainer, PetscErrorCode (*)(void*)); 1694 1695 /* 1696 For use in debuggers 1697 */ 1698 extern PetscMPIInt PetscGlobalRank; 1699 extern PetscMPIInt PetscGlobalSize; 1700 extern PetscErrorCode PetscIntView(PetscInt,const PetscInt[],PetscViewer); 1701 extern PetscErrorCode PetscRealView(PetscInt,const PetscReal[],PetscViewer); 1702 extern PetscErrorCode PetscScalarView(PetscInt,const PetscScalar[],PetscViewer); 1703 1704 #if defined(PETSC_HAVE_MEMORY_H) 1705 #include <memory.h> 1706 #endif 1707 #if defined(PETSC_HAVE_STDLIB_H) 1708 #include <stdlib.h> 1709 #endif 1710 #if defined(PETSC_HAVE_STRINGS_H) 1711 #include <strings.h> 1712 #endif 1713 #if defined(PETSC_HAVE_STRING_H) 1714 #include <string.h> 1715 #endif 1716 1717 1718 #if defined(PETSC_HAVE_XMMINTRIN_H) 1719 #include <xmmintrin.h> 1720 #endif 1721 #if defined(PETSC_HAVE_STDINT_H) 1722 #include <stdint.h> 1723 #endif 1724 1725 #undef __FUNCT__ 1726 #define __FUNCT__ "PetscMemcpy" 1727 /*@C 1728 PetscMemcpy - Copies n bytes, beginning at location b, to the space 1729 beginning at location a. The two memory regions CANNOT overlap, use 1730 PetscMemmove() in that case. 1731 1732 Not Collective 1733 1734 Input Parameters: 1735 + b - pointer to initial memory space 1736 - n - length (in bytes) of space to copy 1737 1738 Output Parameter: 1739 . a - pointer to copy space 1740 1741 Level: intermediate 1742 1743 Compile Option: 1744 PETSC_PREFER_DCOPY_FOR_MEMCPY will cause the BLAS dcopy() routine to be used 1745 for memory copies on double precision values. 1746 PETSC_PREFER_COPY_FOR_MEMCPY will cause C code to be used 1747 for memory copies on double precision values. 1748 PETSC_PREFER_FORTRAN_FORMEMCPY will cause Fortran code to be used 1749 for memory copies on double precision values. 1750 1751 Note: 1752 This routine is analogous to memcpy(). 1753 1754 Developer Note: this is inlined for fastest performance 1755 1756 Concepts: memory^copying 1757 Concepts: copying^memory 1758 1759 .seealso: PetscMemmove() 1760 1761 @*/ 1762 PETSC_STATIC_INLINE PetscErrorCode PetscMemcpy(void *a,const void *b,size_t n) 1763 { 1764 #if defined(PETSC_USE_DEBUG) 1765 unsigned long al = (unsigned long) a,bl = (unsigned long) b; 1766 unsigned long nl = (unsigned long) n; 1767 PetscFunctionBegin; 1768 if (n > 0 && !b) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_NULL,"Trying to copy from a null pointer"); 1769 if (n > 0 && !a) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_NULL,"Trying to copy to a null pointer"); 1770 #else 1771 PetscFunctionBegin; 1772 #endif 1773 if (a != b) { 1774 #if defined(PETSC_USE_DEBUG) 1775 if ((al > bl && (al - bl) < nl) || (bl - al) < nl) { 1776 SETERRQ3(PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"Memory regions overlap: either use PetscMemmov()\n\ 1777 or make sure your copy regions and lengths are correct. \n\ 1778 Length (bytes) %ld first address %ld second address %ld",nl,al,bl); 1779 } 1780 #endif 1781 #if (defined(PETSC_PREFER_DCOPY_FOR_MEMCPY) || defined(PETSC_PREFER_COPY_FOR_MEMCPY) || defined(PETSC_PREFER_FORTRAN_FORMEMCPY)) 1782 if (!(((long) a) % sizeof(PetscScalar)) && !(n % sizeof(PetscScalar))) { 1783 size_t len = n/sizeof(PetscScalar); 1784 #if defined(PETSC_PREFER_DCOPY_FOR_MEMCPY) 1785 PetscBLASInt one = 1,blen = PetscBLASIntCast(len); 1786 BLAScopy_(&blen,(PetscScalar *)b,&one,(PetscScalar *)a,&one); 1787 #elif defined(PETSC_PREFER_FORTRAN_FORMEMCPY) 1788 fortrancopy_(&len,(PetscScalar*)b,(PetscScalar*)a); 1789 #else 1790 size_t i; 1791 PetscScalar *x = (PetscScalar*)b, *y = (PetscScalar*)a; 1792 for (i=0; i<len; i++) y[i] = x[i]; 1793 #endif 1794 } else { 1795 memcpy((char*)(a),(char*)(b),n); 1796 } 1797 #else 1798 memcpy((char*)(a),(char*)(b),n); 1799 #endif 1800 } 1801 PetscFunctionReturn(0); 1802 } 1803 1804 /*@C 1805 PetscMemzero - Zeros the specified memory. 1806 1807 Not Collective 1808 1809 Input Parameters: 1810 + a - pointer to beginning memory location 1811 - n - length (in bytes) of memory to initialize 1812 1813 Level: intermediate 1814 1815 Compile Option: 1816 PETSC_PREFER_BZERO - on certain machines (the IBM RS6000) the bzero() routine happens 1817 to be faster than the memset() routine. This flag causes the bzero() routine to be used. 1818 1819 Developer Note: this is inlined for fastest performance 1820 1821 Concepts: memory^zeroing 1822 Concepts: zeroing^memory 1823 1824 .seealso: PetscMemcpy() 1825 @*/ 1826 PETSC_STATIC_INLINE PetscErrorCode PetscMemzero(void *a,size_t n) 1827 { 1828 if (n > 0) { 1829 #if defined(PETSC_USE_DEBUG) 1830 if (!a) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_NULL,"Trying to zero at a null pointer"); 1831 #endif 1832 #if defined(PETSC_PREFER_ZERO_FOR_MEMZERO) 1833 if (!(((long) a) % sizeof(PetscScalar)) && !(n % sizeof(PetscScalar))) { 1834 size_t i,len = n/sizeof(PetscScalar); 1835 PetscScalar *x = (PetscScalar*)a; 1836 for (i=0; i<len; i++) x[i] = 0.0; 1837 } else { 1838 #elif defined(PETSC_PREFER_FORTRAN_FOR_MEMZERO) 1839 if (!(((long) a) % sizeof(PetscScalar)) && !(n % sizeof(PetscScalar))) { 1840 PetscInt len = n/sizeof(PetscScalar); 1841 fortranzero_(&len,(PetscScalar*)a); 1842 } else { 1843 #endif 1844 #if defined(PETSC_PREFER_BZERO) 1845 bzero((char *)a,n); 1846 #else 1847 memset((char*)a,0,n); 1848 #endif 1849 #if defined(PETSC_PREFER_ZERO_FOR_MEMZERO) || defined(PETSC_PREFER_FORTRAN_FOR_MEMZERO) 1850 } 1851 #endif 1852 } 1853 return 0; 1854 } 1855 1856 /*MC 1857 PetscPrefetchBlock - Prefetches a block of memory 1858 1859 Synopsis: 1860 void PetscPrefetchBlock(const anytype *a,size_t n,int rw,int t) 1861 1862 Not Collective 1863 1864 Input Parameters: 1865 + a - pointer to first element to fetch (any type but usually PetscInt or PetscScalar) 1866 . n - number of elements to fetch 1867 . rw - 1 if the memory will be written to, otherwise 0 (ignored by many processors) 1868 - t - temporal locality (PETSC_PREFETCH_HINT_{NTA,T0,T1,T2}), see note 1869 1870 Level: developer 1871 1872 Notes: 1873 The last two arguments (rw and t) must be compile-time constants. 1874 1875 Adopting Intel's x86/x86-64 conventions, there are four levels of temporal locality. Not all architectures offer 1876 equivalent locality hints, but the following macros are always defined to their closest analogue. 1877 + PETSC_PREFETCH_HINT_NTA - Non-temporal. Prefetches directly to L1, evicts to memory (skips higher level cache unless it was already there when prefetched). 1878 . PETSC_PREFETCH_HINT_T0 - Fetch to all levels of cache and evict to the closest level. Use this when the memory will be reused regularly despite necessary eviction from L1. 1879 . PETSC_PREFETCH_HINT_T1 - Fetch to level 2 and higher (not L1). 1880 - PETSC_PREFETCH_HINT_T2 - Fetch to high-level cache only. (On many systems, T0 and T1 are equivalent.) 1881 1882 This function does nothing on architectures that do not support prefetch and never errors (even if passed an invalid 1883 address). 1884 1885 Concepts: memory 1886 M*/ 1887 #define PetscPrefetchBlock(a,n,rw,t) do { \ 1888 const char *_p = (const char*)(a),*_end = (const char*)((a)+(n)); \ 1889 for ( ; _p < _end; _p += PETSC_LEVEL1_DCACHE_LINESIZE) PETSC_Prefetch(_p,(rw),(t)); \ 1890 } while (0) 1891 1892 /* 1893 Allows accessing MATLAB Engine 1894 */ 1895 #include "petscmatlab.h" 1896 1897 /* 1898 Determine if some of the kernel computation routines use 1899 Fortran (rather than C) for the numerical calculations. On some machines 1900 and compilers (like complex numbers) the Fortran version of the routines 1901 is faster than the C/C++ versions. The flag --with-fortran-kernels 1902 should be used with ./configure to turn these on. 1903 */ 1904 #if defined(PETSC_USE_FORTRAN_KERNELS) 1905 1906 #if !defined(PETSC_USE_FORTRAN_KERNEL_MULTCRL) 1907 #define PETSC_USE_FORTRAN_KERNEL_MULTCRL 1908 #endif 1909 1910 #if !defined(PETSC_USE_FORTRAN_KERNEL_MULTAIJPERM) 1911 #define PETSC_USE_FORTRAN_KERNEL_MULTAIJPERM 1912 #endif 1913 1914 #if !defined(PETSC_USE_FORTRAN_KERNEL_MULTAIJ) 1915 #define PETSC_USE_FORTRAN_KERNEL_MULTAIJ 1916 #endif 1917 1918 #if !defined(PETSC_USE_FORTRAN_KERNEL_MULTTRANSPOSEAIJ) 1919 #define PETSC_USE_FORTRAN_KERNEL_MULTTRANSPOSEAIJ 1920 #endif 1921 1922 #if !defined(PETSC_USE_FORTRAN_KERNEL_NORM) 1923 #define PETSC_USE_FORTRAN_KERNEL_NORM 1924 #endif 1925 1926 #if !defined(PETSC_USE_FORTRAN_KERNEL_MAXPY) 1927 #define PETSC_USE_FORTRAN_KERNEL_MAXPY 1928 #endif 1929 1930 #if !defined(PETSC_USE_FORTRAN_KERNEL_SOLVEAIJ) 1931 #define PETSC_USE_FORTRAN_KERNEL_SOLVEAIJ 1932 #endif 1933 1934 #if !defined(PETSC_USE_FORTRAN_KERNEL_RELAXAIJ) 1935 #define PETSC_USE_FORTRAN_KERNEL_RELAXAIJ 1936 #endif 1937 1938 #if !defined(PETSC_USE_FORTRAN_KERNEL_SOLVEBAIJ) 1939 #define PETSC_USE_FORTRAN_KERNEL_SOLVEBAIJ 1940 #endif 1941 1942 #if !defined(PETSC_USE_FORTRAN_KERNEL_MULTADDAIJ) 1943 #define PETSC_USE_FORTRAN_KERNEL_MULTADDAIJ 1944 #endif 1945 1946 #if !defined(PETSC_USE_FORTRAN_KERNEL_MDOT) 1947 #define PETSC_USE_FORTRAN_KERNEL_MDOT 1948 #endif 1949 1950 #if !defined(PETSC_USE_FORTRAN_KERNEL_XTIMESY) 1951 #define PETSC_USE_FORTRAN_KERNEL_XTIMESY 1952 #endif 1953 1954 #if !defined(PETSC_USE_FORTRAN_KERNEL_AYPX) 1955 #define PETSC_USE_FORTRAN_KERNEL_AYPX 1956 #endif 1957 1958 #if !defined(PETSC_USE_FORTRAN_KERNEL_WAXPY) 1959 #define PETSC_USE_FORTRAN_KERNEL_WAXPY 1960 #endif 1961 1962 #endif 1963 1964 /* 1965 Macros for indicating code that should be compiled with a C interface, 1966 rather than a C++ interface. Any routines that are dynamically loaded 1967 (such as the PCCreate_XXX() routines) must be wrapped so that the name 1968 mangler does not change the functions symbol name. This just hides the 1969 ugly extern "C" {} wrappers. 1970 */ 1971 #if defined(__cplusplus) 1972 #define EXTERN_C_BEGIN extern "C" { 1973 #define EXTERN_C_END } 1974 #else 1975 #define EXTERN_C_BEGIN 1976 #define EXTERN_C_END 1977 #endif 1978 1979 /* --------------------------------------------------------------------*/ 1980 1981 /*MC 1982 MPI_Comm - the basic object used by MPI to determine which processes are involved in a 1983 communication 1984 1985 Level: beginner 1986 1987 Note: This manual page is a place-holder because MPICH does not have a manual page for MPI_Comm 1988 1989 .seealso: PETSC_COMM_WORLD, PETSC_COMM_SELF 1990 M*/ 1991 1992 /*MC 1993 PetscScalar - PETSc type that represents either a double precision real number, a double precision 1994 complex number, a single precision real number, a long double or an int - if the code is configured 1995 with --with-scalar-type=real,complex --with-precision=single,double,longdouble,int,matsingle 1996 1997 1998 Level: beginner 1999 2000 .seealso: PetscReal, PassiveReal, PassiveScalar, MPIU_SCALAR, PetscInt 2001 M*/ 2002 2003 /*MC 2004 PetscReal - PETSc type that represents a real number version of PetscScalar 2005 2006 Level: beginner 2007 2008 .seealso: PetscScalar, PassiveReal, PassiveScalar 2009 M*/ 2010 2011 /*MC 2012 PassiveScalar - PETSc type that represents a PetscScalar 2013 Level: beginner 2014 2015 This is the same as a PetscScalar except in code that is automatically differentiated it is 2016 treated as a constant (not an indendent or dependent variable) 2017 2018 .seealso: PetscReal, PassiveReal, PetscScalar 2019 M*/ 2020 2021 /*MC 2022 PassiveReal - PETSc type that represents a PetscReal 2023 2024 Level: beginner 2025 2026 This is the same as a PetscReal except in code that is automatically differentiated it is 2027 treated as a constant (not an indendent or dependent variable) 2028 2029 .seealso: PetscScalar, PetscReal, PassiveScalar 2030 M*/ 2031 2032 /*MC 2033 MPIU_SCALAR - MPI datatype corresponding to PetscScalar 2034 2035 Level: beginner 2036 2037 Note: In MPI calls that require an MPI datatype that matches a PetscScalar or array of PetscScalars 2038 pass this value 2039 2040 .seealso: PetscReal, PassiveReal, PassiveScalar, PetscScalar, MPIU_INT 2041 M*/ 2042 2043 #if defined(PETSC_HAVE_MPIIO) 2044 #if !defined(PETSC_WORDS_BIGENDIAN) 2045 extern PetscErrorCode MPIU_File_write_all(MPI_File,void*,PetscMPIInt,MPI_Datatype,MPI_Status*); 2046 extern PetscErrorCode MPIU_File_read_all(MPI_File,void*,PetscMPIInt,MPI_Datatype,MPI_Status*); 2047 #else 2048 #define MPIU_File_write_all(a,b,c,d,e) MPI_File_write_all(a,b,c,d,e) 2049 #define MPIU_File_read_all(a,b,c,d,e) MPI_File_read_all(a,b,c,d,e) 2050 #endif 2051 #endif 2052 2053 /* the following petsc_static_inline require petscerror.h */ 2054 2055 /* Limit MPI to 32-bits */ 2056 #define PETSC_MPI_INT_MAX 2147483647 2057 #define PETSC_MPI_INT_MIN -2147483647 2058 /* Limit BLAS to 32-bits */ 2059 #define PETSC_BLAS_INT_MAX 2147483647 2060 #define PETSC_BLAS_INT_MIN -2147483647 2061 /* On 32 bit systems HDF5 is limited by size of integer, because hsize_t is defined as size_t */ 2062 #define PETSC_HDF5_INT_MAX 2147483647 2063 #define PETSC_HDF5_INT_MIN -2147483647 2064 2065 #if defined(PETSC_USE_64BIT_INDICES) 2066 #define PetscMPIIntCheck(a) if ((a) > PETSC_MPI_INT_MAX) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Message too long for MPI") 2067 #define PetscBLASIntCheck(a) if ((a) > PETSC_BLAS_INT_MAX) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Array too long for BLAS/LAPACK") 2068 #define PetscMPIIntCast(a) (PetscMPIInt)(a);PetscMPIIntCheck(a) 2069 #define PetscBLASIntCast(a) (PetscBLASInt)(a);PetscBLASIntCheck(a) 2070 2071 #if (PETSC_SIZEOF_SIZE_T == 4) 2072 #define PetscHDF5IntCheck(a) if ((a) > PETSC_HDF5_INT_MAX) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Array too long for HDF5") 2073 #define PetscHDF5IntCast(a) (hsize_t)(a);PetscHDF5IntCheck(a) 2074 #else 2075 #define PetscHDF5IntCheck(a) 2076 #define PetscHDF5IntCast(a) a 2077 #endif 2078 2079 #else 2080 #define PetscMPIIntCheck(a) 2081 #define PetscBLASIntCheck(a) 2082 #define PetscHDF5IntCheck(a) 2083 #define PetscMPIIntCast(a) a 2084 #define PetscBLASIntCast(a) a 2085 #define PetscHDF5IntCast(a) a 2086 #endif 2087 2088 2089 /* 2090 The IBM include files define hz, here we hide it so that it may be used 2091 as a regular user variable. 2092 */ 2093 #if defined(hz) 2094 #undef hz 2095 #endif 2096 2097 /* For arrays that contain filenames or paths */ 2098 2099 2100 #if defined(PETSC_HAVE_LIMITS_H) 2101 #include <limits.h> 2102 #endif 2103 #if defined(PETSC_HAVE_SYS_PARAM_H) 2104 #include <sys/param.h> 2105 #endif 2106 #if defined(PETSC_HAVE_SYS_TYPES_H) 2107 #include <sys/types.h> 2108 #endif 2109 #if defined(MAXPATHLEN) 2110 # define PETSC_MAX_PATH_LEN MAXPATHLEN 2111 #elif defined(MAX_PATH) 2112 # define PETSC_MAX_PATH_LEN MAX_PATH 2113 #elif defined(_MAX_PATH) 2114 # define PETSC_MAX_PATH_LEN _MAX_PATH 2115 #else 2116 # define PETSC_MAX_PATH_LEN 4096 2117 #endif 2118 2119 /* Special support for C++ */ 2120 #include "petscsys.hh" 2121 2122 2123 /*MC 2124 2125 UsingFortran - Fortran can be used with PETSc in four distinct approaches 2126 2127 $ 1) classic Fortran 77 style 2128 $#include "finclude/petscXXX.h" to work with material from the XXX component of PETSc 2129 $ XXX variablename 2130 $ You cannot use this approach if you wish to use the Fortran 90 specific PETSc routines 2131 $ which end in F90; such as VecGetArrayF90() 2132 $ 2133 $ 2) classic Fortran 90 style 2134 $#include "finclude/petscXXX.h" 2135 $#include "finclude/petscXXX.h90" to work with material from the XXX component of PETSc 2136 $ XXX variablename 2137 $ 2138 $ 3) Using Fortran modules 2139 $#include "finclude/petscXXXdef.h" 2140 $ use petscXXXX 2141 $ XXX variablename 2142 $ 2143 $ 4) Use Fortran modules and Fortran data types for PETSc types 2144 $#include "finclude/petscXXXdef.h" 2145 $ use petscXXXX 2146 $ type(XXX) variablename 2147 $ To use this approach you must ./configure PETSc with the additional 2148 $ option --with-fortran-datatypes You cannot use the type(XXX) declaration approach without using Fortran modules 2149 2150 Finally if you absolutely do not want to use any #include you can use either 2151 2152 $ 3a) skip the #include BUT you cannot use any PETSc data type names like Vec, Mat, PetscInt, PetscErrorCode etc 2153 $ and you must declare the variables as integer, for example 2154 $ integer variablename 2155 $ 2156 $ 4a) skip the #include, you use the object types like type(Vec) type(Mat) but cannot use the data type 2157 $ names like PetscErrorCode, PetscInt etc. again for those you must use integer 2158 2159 We recommend either 2 or 3. Approaches 2 and 3 provide type checking for most PETSc function calls; 4 has type checking 2160 for only a few PETSc functions. 2161 2162 Fortran type checking with interfaces is strick, this means you cannot pass a scalar value when an array value 2163 is expected (even though it is legal Fortran). For example when setting a single value in a matrix with MatSetValues() 2164 you cannot have something like 2165 $ PetscInt row,col 2166 $ PetscScalar val 2167 $ ... 2168 $ call MatSetValues(mat,1,row,1,col,val,INSERT_VALUES,ierr) 2169 You must instead have 2170 $ PetscInt row(1),col(1) 2171 $ PetscScalar val(1) 2172 $ ... 2173 $ call MatSetValues(mat,1,row,1,col,val,INSERT_VALUES,ierr) 2174 2175 2176 See the example src/vec/vec/examples/tutorials/ex20f90.F90 for an example that can use all four approaches 2177 2178 Developer Notes: The finclude/petscXXXdef.h contain all the #defines (would be typedefs in C code) these 2179 automatically include their predecessors; for example finclude/petscvecdef.h includes finclude/petscisdef.h 2180 2181 The finclude/petscXXXX.h contain all the parameter statements for that package. These automatically include 2182 their finclude/petscXXXdef.h file but DO NOT automatically include their predecessors; for example 2183 finclude/petscvec.h does NOT automatically include finclude/petscis.h 2184 2185 The finclude/ftn-custom/petscXXXdef.h90 are not intended to be used directly in code, they define the 2186 Fortran data type type(XXX) (for example type(Vec)) when PETSc is ./configure with the --with-fortran-datatypes option. 2187 2188 The finclude/ftn-custom/petscXXX.h90 (not included directly by code) contain interface definitions for 2189 the PETSc Fortran stubs that have different bindings then their C version (for example VecGetArrayF90). 2190 2191 The finclude/ftn-auto/petscXXX.h90 (not included directly by code) contain interface definitions generated 2192 automatically by "make allfortranstubs". 2193 2194 The finclude/petscXXX.h90 includes the custom finclude/ftn-custom/petscXXX.h90 and if ./configure 2195 was run with --with-fortran-interfaces it also includes the finclude/ftn-auto/petscXXX.h90 These DO NOT automatically 2196 include their predecessors 2197 2198 Level: beginner 2199 2200 M*/ 2201 2202 extern PetscErrorCode PetscGetArchType(char[],size_t); 2203 extern PetscErrorCode PetscGetHostName(char[],size_t); 2204 extern PetscErrorCode PetscGetUserName(char[],size_t); 2205 extern PetscErrorCode PetscGetProgramName(char[],size_t); 2206 extern PetscErrorCode PetscSetProgramName(const char[]); 2207 extern PetscErrorCode PetscGetDate(char[],size_t); 2208 2209 extern PetscErrorCode PetscSortInt(PetscInt,PetscInt[]); 2210 extern PetscErrorCode PetscSortRemoveDupsInt(PetscInt*,PetscInt[]); 2211 extern PetscErrorCode PetscSortIntWithPermutation(PetscInt,const PetscInt[],PetscInt[]); 2212 extern PetscErrorCode PetscSortStrWithPermutation(PetscInt,const char*[],PetscInt[]); 2213 extern PetscErrorCode PetscSortIntWithArray(PetscInt,PetscInt[],PetscInt[]); 2214 extern PetscErrorCode PetscSortIntWithArrayPair(PetscInt,PetscInt*,PetscInt*,PetscInt*); 2215 extern PetscErrorCode PetscSortMPIIntWithArray(PetscMPIInt,PetscMPIInt[],PetscMPIInt[]); 2216 extern PetscErrorCode PetscSortIntWithScalarArray(PetscInt,PetscInt[],PetscScalar[]); 2217 extern PetscErrorCode PetscSortReal(PetscInt,PetscReal[]); 2218 extern PetscErrorCode PetscSortRealWithPermutation(PetscInt,const PetscReal[],PetscInt[]); 2219 extern PetscErrorCode PetscSortSplit(PetscInt,PetscInt,PetscScalar[],PetscInt[]); 2220 extern PetscErrorCode PetscSortSplitReal(PetscInt,PetscInt,PetscReal[],PetscInt[]); 2221 extern PetscErrorCode PetscProcessTree(PetscInt,const PetscBool [],const PetscInt[],PetscInt*,PetscInt**,PetscInt**,PetscInt**,PetscInt**); 2222 extern PetscErrorCode PetscMergeIntArrayPair(PetscInt,const PetscInt*,const PetscInt*,PetscInt,const PetscInt*,const PetscInt*,PetscInt*,PetscInt**,PetscInt**); 2223 2224 extern PetscErrorCode PetscSetDisplay(void); 2225 extern PetscErrorCode PetscGetDisplay(char[],size_t); 2226 2227 /*J 2228 PetscRandomType - String with the name of a PETSc randomizer 2229 with an optional dynamic library name, for example 2230 http://www.mcs.anl.gov/petsc/lib.a:myrandcreate() 2231 2232 Level: beginner 2233 2234 Notes: to use the SPRNG you must have ./configure PETSc 2235 with the option --download-sprng 2236 2237 .seealso: PetscRandomSetType(), PetscRandom 2238 J*/ 2239 #define PetscRandomType char* 2240 #define PETSCRAND "rand" 2241 #define PETSCRAND48 "rand48" 2242 #define PETSCSPRNG "sprng" 2243 2244 /* Logging support */ 2245 extern PetscClassId PETSC_RANDOM_CLASSID; 2246 2247 extern PetscErrorCode PetscRandomInitializePackage(const char[]); 2248 2249 /*S 2250 PetscRandom - Abstract PETSc object that manages generating random numbers 2251 2252 Level: intermediate 2253 2254 Concepts: random numbers 2255 2256 .seealso: PetscRandomCreate(), PetscRandomGetValue(), PetscRandomType 2257 S*/ 2258 typedef struct _p_PetscRandom* PetscRandom; 2259 2260 /* Dynamic creation and loading functions */ 2261 extern PetscFList PetscRandomList; 2262 extern PetscBool PetscRandomRegisterAllCalled; 2263 2264 extern PetscErrorCode PetscRandomRegisterAll(const char []); 2265 extern PetscErrorCode PetscRandomRegister(const char[],const char[],const char[],PetscErrorCode (*)(PetscRandom)); 2266 extern PetscErrorCode PetscRandomRegisterDestroy(void); 2267 extern PetscErrorCode PetscRandomSetType(PetscRandom, const PetscRandomType); 2268 extern PetscErrorCode PetscRandomSetFromOptions(PetscRandom); 2269 extern PetscErrorCode PetscRandomGetType(PetscRandom, const PetscRandomType*); 2270 extern PetscErrorCode PetscRandomViewFromOptions(PetscRandom,char*); 2271 extern PetscErrorCode PetscRandomView(PetscRandom,PetscViewer); 2272 2273 /*MC 2274 PetscRandomRegisterDynamic - Adds a new PetscRandom component implementation 2275 2276 Synopsis: 2277 PetscErrorCode PetscRandomRegisterDynamic(const char *name, const char *path, const char *func_name, PetscErrorCode (*create_func)(PetscRandom)) 2278 2279 Not Collective 2280 2281 Input Parameters: 2282 + name - The name of a new user-defined creation routine 2283 . path - The path (either absolute or relative) of the library containing this routine 2284 . func_name - The name of routine to create method context 2285 - create_func - The creation routine itself 2286 2287 Notes: 2288 PetscRandomRegisterDynamic() may be called multiple times to add several user-defined randome number generators 2289 2290 If dynamic libraries are used, then the fourth input argument (routine_create) is ignored. 2291 2292 Sample usage: 2293 .vb 2294 PetscRandomRegisterDynamic("my_rand","/home/username/my_lib/lib/libO/solaris/libmy.a", "MyPetscRandomtorCreate", MyPetscRandomtorCreate); 2295 .ve 2296 2297 Then, your random type can be chosen with the procedural interface via 2298 .vb 2299 PetscRandomCreate(MPI_Comm, PetscRandom *); 2300 PetscRandomSetType(PetscRandom,"my_random_name"); 2301 .ve 2302 or at runtime via the option 2303 .vb 2304 -random_type my_random_name 2305 .ve 2306 2307 Notes: $PETSC_ARCH occuring in pathname will be replaced with appropriate values. 2308 2309 For an example of the code needed to interface your own random number generator see 2310 src/sys/random/impls/rand/rand.c 2311 2312 Level: advanced 2313 2314 .keywords: PetscRandom, register 2315 .seealso: PetscRandomRegisterAll(), PetscRandomRegisterDestroy(), PetscRandomRegister() 2316 M*/ 2317 #if defined(PETSC_USE_DYNAMIC_LIBRARIES) 2318 #define PetscRandomRegisterDynamic(a,b,c,d) PetscRandomRegister(a,b,c,0) 2319 #else 2320 #define PetscRandomRegisterDynamic(a,b,c,d) PetscRandomRegister(a,b,c,d) 2321 #endif 2322 2323 extern PetscErrorCode PetscRandomCreate(MPI_Comm,PetscRandom*); 2324 extern PetscErrorCode PetscRandomGetValue(PetscRandom,PetscScalar*); 2325 extern PetscErrorCode PetscRandomGetValueReal(PetscRandom,PetscReal*); 2326 extern PetscErrorCode PetscRandomGetInterval(PetscRandom,PetscScalar*,PetscScalar*); 2327 extern PetscErrorCode PetscRandomSetInterval(PetscRandom,PetscScalar,PetscScalar); 2328 extern PetscErrorCode PetscRandomSetSeed(PetscRandom,unsigned long); 2329 extern PetscErrorCode PetscRandomGetSeed(PetscRandom,unsigned long *); 2330 extern PetscErrorCode PetscRandomSeed(PetscRandom); 2331 extern PetscErrorCode PetscRandomDestroy(PetscRandom*); 2332 2333 extern PetscErrorCode PetscGetFullPath(const char[],char[],size_t); 2334 extern PetscErrorCode PetscGetRelativePath(const char[],char[],size_t); 2335 extern PetscErrorCode PetscGetWorkingDirectory(char[],size_t); 2336 extern PetscErrorCode PetscGetRealPath(const char[],char[]); 2337 extern PetscErrorCode PetscGetHomeDirectory(char[],size_t); 2338 extern PetscErrorCode PetscTestFile(const char[],char,PetscBool *); 2339 extern PetscErrorCode PetscTestDirectory(const char[],char,PetscBool *); 2340 2341 extern PetscErrorCode PetscBinaryRead(int,void*,PetscInt,PetscDataType); 2342 extern PetscErrorCode PetscBinarySynchronizedRead(MPI_Comm,int,void*,PetscInt,PetscDataType); 2343 extern PetscErrorCode PetscBinarySynchronizedWrite(MPI_Comm,int,void*,PetscInt,PetscDataType,PetscBool ); 2344 extern PetscErrorCode PetscBinaryWrite(int,void*,PetscInt,PetscDataType,PetscBool ); 2345 extern PetscErrorCode PetscBinaryOpen(const char[],PetscFileMode,int *); 2346 extern PetscErrorCode PetscBinaryClose(int); 2347 extern PetscErrorCode PetscSharedTmp(MPI_Comm,PetscBool *); 2348 extern PetscErrorCode PetscSharedWorkingDirectory(MPI_Comm,PetscBool *); 2349 extern PetscErrorCode PetscGetTmp(MPI_Comm,char[],size_t); 2350 extern PetscErrorCode PetscFileRetrieve(MPI_Comm,const char[],char[],size_t,PetscBool *); 2351 extern PetscErrorCode PetscLs(MPI_Comm,const char[],char[],size_t,PetscBool *); 2352 extern PetscErrorCode PetscOpenSocket(char*,int,int*); 2353 extern PetscErrorCode PetscWebServe(MPI_Comm,int); 2354 2355 /* 2356 In binary files variables are stored using the following lengths, 2357 regardless of how they are stored in memory on any one particular 2358 machine. Use these rather then sizeof() in computing sizes for 2359 PetscBinarySeek(). 2360 */ 2361 #define PETSC_BINARY_INT_SIZE (32/8) 2362 #define PETSC_BINARY_FLOAT_SIZE (32/8) 2363 #define PETSC_BINARY_CHAR_SIZE (8/8) 2364 #define PETSC_BINARY_SHORT_SIZE (16/8) 2365 #define PETSC_BINARY_DOUBLE_SIZE (64/8) 2366 #define PETSC_BINARY_SCALAR_SIZE sizeof(PetscScalar) 2367 2368 /*E 2369 PetscBinarySeekType - argument to PetscBinarySeek() 2370 2371 Level: advanced 2372 2373 .seealso: PetscBinarySeek(), PetscBinarySynchronizedSeek() 2374 E*/ 2375 typedef enum {PETSC_BINARY_SEEK_SET = 0,PETSC_BINARY_SEEK_CUR = 1,PETSC_BINARY_SEEK_END = 2} PetscBinarySeekType; 2376 extern PetscErrorCode PetscBinarySeek(int,off_t,PetscBinarySeekType,off_t*); 2377 extern PetscErrorCode PetscBinarySynchronizedSeek(MPI_Comm,int,off_t,PetscBinarySeekType,off_t*); 2378 extern PetscErrorCode PetscByteSwap(void *,PetscDataType,PetscInt); 2379 2380 extern PetscErrorCode PetscSetDebugTerminal(const char[]); 2381 extern PetscErrorCode PetscSetDebugger(const char[],PetscBool ); 2382 extern PetscErrorCode PetscSetDefaultDebugger(void); 2383 extern PetscErrorCode PetscSetDebuggerFromString(char*); 2384 extern PetscErrorCode PetscAttachDebugger(void); 2385 extern PetscErrorCode PetscStopForDebugger(void); 2386 2387 extern PetscErrorCode PetscGatherNumberOfMessages(MPI_Comm,const PetscMPIInt[],const PetscMPIInt[],PetscMPIInt*); 2388 extern PetscErrorCode PetscGatherMessageLengths(MPI_Comm,PetscMPIInt,PetscMPIInt,const PetscMPIInt[],PetscMPIInt**,PetscMPIInt**); 2389 extern PetscErrorCode PetscGatherMessageLengths2(MPI_Comm,PetscMPIInt,PetscMPIInt,const PetscMPIInt[],const PetscMPIInt[],PetscMPIInt**,PetscMPIInt**,PetscMPIInt**); 2390 extern PetscErrorCode PetscPostIrecvInt(MPI_Comm,PetscMPIInt,PetscMPIInt,const PetscMPIInt[],const PetscMPIInt[],PetscInt***,MPI_Request**); 2391 extern PetscErrorCode PetscPostIrecvScalar(MPI_Comm,PetscMPIInt,PetscMPIInt,const PetscMPIInt[],const PetscMPIInt[],PetscScalar***,MPI_Request**); 2392 2393 extern PetscErrorCode PetscSSEIsEnabled(MPI_Comm,PetscBool *,PetscBool *); 2394 2395 /*E 2396 InsertMode - Whether entries are inserted or added into vectors or matrices 2397 2398 Level: beginner 2399 2400 .seealso: VecSetValues(), MatSetValues(), VecSetValue(), VecSetValuesBlocked(), 2401 VecSetValuesLocal(), VecSetValuesBlockedLocal(), MatSetValuesBlocked(), 2402 MatSetValuesBlockedLocal(), MatSetValuesLocal(), VecScatterBegin(), VecScatterEnd() 2403 E*/ 2404 typedef enum {NOT_SET_VALUES, INSERT_VALUES, ADD_VALUES, MAX_VALUES, INSERT_ALL_VALUES, ADD_ALL_VALUES} InsertMode; 2405 2406 /*MC 2407 INSERT_VALUES - Put a value into a vector or matrix, overwrites any previous value 2408 2409 Level: beginner 2410 2411 .seealso: InsertMode, VecSetValues(), MatSetValues(), VecSetValue(), VecSetValuesBlocked(), 2412 VecSetValuesLocal(), VecSetValuesBlockedLocal(), MatSetValuesBlocked(), ADD_VALUES, 2413 MatSetValuesBlockedLocal(), MatSetValuesLocal(), VecScatterBegin(), VecScatterEnd(), MAX_VALUES 2414 2415 M*/ 2416 2417 /*MC 2418 ADD_VALUES - Adds a value into a vector or matrix, if there previously was no value, just puts the 2419 value into that location 2420 2421 Level: beginner 2422 2423 .seealso: InsertMode, VecSetValues(), MatSetValues(), VecSetValue(), VecSetValuesBlocked(), 2424 VecSetValuesLocal(), VecSetValuesBlockedLocal(), MatSetValuesBlocked(), INSERT_VALUES, 2425 MatSetValuesBlockedLocal(), MatSetValuesLocal(), VecScatterBegin(), VecScatterEnd(), MAX_VALUES 2426 2427 M*/ 2428 2429 /*MC 2430 MAX_VALUES - Puts the maximum of the scattered/gathered value and the current value into each location 2431 2432 Level: beginner 2433 2434 .seealso: InsertMode, VecScatterBegin(), VecScatterEnd(), ADD_VALUES, INSERT_VALUES 2435 2436 M*/ 2437 2438 /*S 2439 PetscSubcomm - Context of MPI subcommunicators, used by PCREDUNDANT 2440 2441 Level: advanced 2442 2443 Concepts: communicator, create 2444 S*/ 2445 typedef struct _n_PetscSubcomm* PetscSubcomm; 2446 2447 struct _n_PetscSubcomm { 2448 MPI_Comm parent; /* parent communicator */ 2449 MPI_Comm dupparent; /* duplicate parent communicator, under which the processors of this subcomm have contiguous rank */ 2450 MPI_Comm comm; /* this communicator */ 2451 PetscInt n; /* num of subcommunicators under the parent communicator */ 2452 PetscInt color; /* color of processors belong to this communicator */ 2453 }; 2454 2455 typedef enum {PETSC_SUBCOMM_GENERAL=0,PETSC_SUBCOMM_CONTIGUOUS=1,PETSC_SUBCOMM_INTERLACED=2} PetscSubcommType; 2456 extern const char *PetscSubcommTypes[]; 2457 2458 extern PetscErrorCode PetscSubcommCreate(MPI_Comm,PetscSubcomm*); 2459 extern PetscErrorCode PetscSubcommDestroy(PetscSubcomm*); 2460 extern PetscErrorCode PetscSubcommSetNumber(PetscSubcomm,PetscInt); 2461 extern PetscErrorCode PetscSubcommSetType(PetscSubcomm,const PetscSubcommType); 2462 extern PetscErrorCode PetscSubcommSetTypeGeneral(PetscSubcomm,PetscMPIInt,PetscMPIInt,PetscMPIInt); 2463 2464 #include <petscctable.h> 2465 2466 PETSC_EXTERN_CXX_END 2467 2468 /* Reset __FUNCT__ in case the user does not define it themselves */ 2469 #undef __FUNCT__ 2470 #define __FUNCT__ "User provided function" 2471 2472 #endif 2473