12eac72dbSBarry Smith /* 237f753daSBarry Smith Defines the vector component of PETSc. Vectors generally represent 337f753daSBarry Smith degrees of freedom for finite element/finite difference functions 484cb2905SBarry Smith on a grid. They have more mathematical structure then simple arrays. 52eac72dbSBarry Smith */ 62eac72dbSBarry Smith 70a835dfdSSatish Balay #ifndef __PETSCVEC_H 80a835dfdSSatish Balay #define __PETSCVEC_H 92c8e378dSBarry Smith #include <petscis.h> 10665c2dedSJed Brown #include <petscviewer.h> 112eac72dbSBarry Smith 1209321671SBarry Smith /*S 1309321671SBarry Smith Vec - Abstract PETSc vector object 1409321671SBarry Smith 1509321671SBarry Smith Level: beginner 1609321671SBarry Smith 1709321671SBarry Smith Concepts: field variables, unknowns, arrays 1809321671SBarry Smith 1909321671SBarry Smith .seealso: VecCreate(), VecType, VecSetType() 2009321671SBarry Smith S*/ 21f09e8eb9SSatish Balay typedef struct _p_Vec* Vec; 2209321671SBarry Smith 2309321671SBarry Smith /*S 2409321671SBarry Smith VecScatter - Object used to manage communication of data 2509321671SBarry Smith between vectors in parallel. Manages both scatters and gathers 2609321671SBarry Smith 2709321671SBarry Smith Level: beginner 2809321671SBarry Smith 2909321671SBarry Smith Concepts: scatter 3009321671SBarry Smith 3109321671SBarry Smith .seealso: VecScatterCreate(), VecScatterBegin(), VecScatterEnd() 3209321671SBarry Smith S*/ 33f09e8eb9SSatish Balay typedef struct _p_VecScatter* VecScatter; 3409321671SBarry Smith 3509321671SBarry Smith /*E 36398c84b2SBarry Smith ScatterMode - Determines the direction of a scatter 37398c84b2SBarry Smith 38398c84b2SBarry Smith Level: beginner 39398c84b2SBarry Smith 40398c84b2SBarry Smith .seealso: VecScatter, VecScatterBegin(), VecScatterEnd() 41398c84b2SBarry Smith E*/ 42398c84b2SBarry Smith typedef enum {SCATTER_FORWARD=0, SCATTER_REVERSE=1, SCATTER_FORWARD_LOCAL=2, SCATTER_REVERSE_LOCAL=3, SCATTER_LOCAL=2} ScatterMode; 43398c84b2SBarry Smith 44398c84b2SBarry Smith /*MC 45398c84b2SBarry Smith SCATTER_FORWARD - Scatters the values as dictated by the VecScatterCreate() call 46398c84b2SBarry Smith 47398c84b2SBarry Smith Level: beginner 48398c84b2SBarry Smith 49398c84b2SBarry Smith .seealso: VecScatter, ScatterMode, VecScatterCreate(), VecScatterBegin(), VecScatterEnd(), SCATTER_REVERSE, SCATTER_FORWARD_LOCAL, 50398c84b2SBarry Smith SCATTER_REVERSE_LOCAL 51398c84b2SBarry Smith 52398c84b2SBarry Smith M*/ 53398c84b2SBarry Smith 54398c84b2SBarry Smith /*MC 55398c84b2SBarry Smith SCATTER_REVERSE - Moves the values in the opposite direction then the directions indicated in 56398c84b2SBarry Smith in the VecScatterCreate() 57398c84b2SBarry Smith 58398c84b2SBarry Smith Level: beginner 59398c84b2SBarry Smith 60398c84b2SBarry Smith .seealso: VecScatter, ScatterMode, VecScatterCreate(), VecScatterBegin(), VecScatterEnd(), SCATTER_FORWARD, SCATTER_FORWARD_LOCAL, 61398c84b2SBarry Smith SCATTER_REVERSE_LOCAL 62398c84b2SBarry Smith 63398c84b2SBarry Smith M*/ 64398c84b2SBarry Smith 65398c84b2SBarry Smith /*MC 66398c84b2SBarry Smith SCATTER_FORWARD_LOCAL - Scatters the values as dictated by the VecScatterCreate() call except NO parallel communication 67398c84b2SBarry Smith is done. Any variables that have be moved between processes are ignored 68398c84b2SBarry Smith 69398c84b2SBarry Smith Level: developer 70398c84b2SBarry Smith 71398c84b2SBarry Smith .seealso: VecScatter, ScatterMode, VecScatterCreate(), VecScatterBegin(), VecScatterEnd(), SCATTER_REVERSE, SCATTER_FORWARD, 72398c84b2SBarry Smith SCATTER_REVERSE_LOCAL 73398c84b2SBarry Smith 74398c84b2SBarry Smith M*/ 75398c84b2SBarry Smith 76398c84b2SBarry Smith /*MC 77398c84b2SBarry Smith SCATTER_REVERSE_LOCAL - Moves the values in the opposite direction then the directions indicated in 78398c84b2SBarry Smith in the VecScatterCreate() except NO parallel communication 79398c84b2SBarry Smith is done. Any variables that have be moved between processes are ignored 80398c84b2SBarry Smith 81398c84b2SBarry Smith Level: developer 82398c84b2SBarry Smith 83398c84b2SBarry Smith .seealso: VecScatter, ScatterMode, VecScatterCreate(), VecScatterBegin(), VecScatterEnd(), SCATTER_FORWARD, SCATTER_FORWARD_LOCAL, 84398c84b2SBarry Smith SCATTER_REVERSE 85398c84b2SBarry Smith 86398c84b2SBarry Smith M*/ 87398c84b2SBarry Smith 8876bdecfbSBarry Smith /*J 898f6c3df8SBarry Smith VecType - String with the name of a PETSc vector 9009321671SBarry Smith 9109321671SBarry Smith Level: beginner 9209321671SBarry Smith 938f6c3df8SBarry Smith .seealso: VecSetType(), Vec, VecCreate(), VecDestroy() 9476bdecfbSBarry Smith J*/ 9519fd82e9SBarry Smith typedef const char* VecType; 960676abe4SMatthew Knepley #define VECSEQ "seq" 970676abe4SMatthew Knepley #define VECMPI "mpi" 98f48c50deSBarry Smith #define VECSTANDARD "standard" /* seq on one process and mpi on several */ 990676abe4SMatthew Knepley #define VECSHARED "shared" 1008154be41SBarry Smith #define VECSEQCUSP "seqcusp" 1018154be41SBarry Smith #define VECMPICUSP "mpicusp" 1028154be41SBarry Smith #define VECCUSP "cusp" /* seqcusp on one process and mpicusp on several */ 103b17c682bSKarl Rupp #define VECSEQVIENNACL "seqviennacl" 104b17c682bSKarl Rupp #define VECMPIVIENNACL "mpiviennacl" 105b17c682bSKarl Rupp #define VECVIENNACL "viennacl" /* seqviennacl on one process and mpiviennacl on several */ 1061aae2881SJed Brown #define VECNEST "nest" 1071bf2b38bSKerry Stevens #define VECSEQPTHREAD "seqpthread" 1084b71561bSShri Abhyankar #define VECMPIPTHREAD "mpipthread" 109bf2c1783SBarry Smith #define VECPTHREAD "pthread" /* seqpthread on one process and mpipthread on several */ 1102eac72dbSBarry Smith 1114b71561bSShri Abhyankar 112fd487807SMatthew Knepley /* Logging support */ 1130700a824SBarry Smith #define VEC_FILE_CLASSID 1211214 114014dd563SJed Brown PETSC_EXTERN PetscClassId VEC_CLASSID; 115014dd563SJed Brown PETSC_EXTERN PetscClassId VEC_SCATTER_CLASSID; 1168ba1e511SMatthew Knepley 11745b63f25SDmitry Karpeev 118607a6623SBarry Smith PETSC_EXTERN PetscErrorCode VecInitializePackage(void); 119014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecFinalizePackage(void); 120fd487807SMatthew Knepley 121014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecCreate(MPI_Comm,Vec*); 122014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecCreateSeq(MPI_Comm,PetscInt,Vec*); 123014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecCreateMPI(MPI_Comm,PetscInt,PetscInt,Vec*); 124014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecCreateSeqWithArray(MPI_Comm,PetscInt,PetscInt,const PetscScalar[],Vec*); 125014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecCreateMPIWithArray(MPI_Comm,PetscInt,PetscInt,PetscInt,const PetscScalar[],Vec*); 126014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecCreateShared(MPI_Comm,PetscInt,PetscInt,Vec*); 127014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecSetFromOptions(Vec); 128ce1779c8SBarry Smith PETSC_STATIC_INLINE PetscErrorCode VecViewFromOptions(Vec A,const char prefix[],const char name[]) {return PetscObjectViewFromOptions((PetscObject)A,prefix,name);} 1290d2bece7SBarry Smith 130014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecSetUp(Vec); 131014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecDestroy(Vec*); 132014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecZeroEntries(Vec); 133014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecSetOptionsPrefix(Vec,const char[]); 134014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecAppendOptionsPrefix(Vec,const char[]); 135014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecGetOptionsPrefix(Vec,const char*[]); 136f69a0ea3SMatthew Knepley 137014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecSetSizes(Vec,PetscInt,PetscInt); 138fd487807SMatthew Knepley 13952b6e47cSBarry Smith PETSC_EXTERN PetscErrorCode VecDotNorm2(Vec,Vec,PetscScalar*,PetscReal*); 140014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecDot(Vec,Vec,PetscScalar*); 14167392de3SBarry Smith PETSC_EXTERN PetscErrorCode VecDotRealPart(Vec,Vec,PetscReal*); 142014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecTDot(Vec,Vec,PetscScalar*); 143014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecMDot(Vec,PetscInt,const Vec[],PetscScalar[]); 144014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecMTDot(Vec,PetscInt,const Vec[],PetscScalar[]); 145014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecGetSubVector(Vec,IS,Vec*); 146014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecRestoreSubVector(Vec,IS,Vec*); 147cddf8d76SBarry Smith 14809321671SBarry Smith /*E 14909321671SBarry Smith NormType - determines what type of norm to compute 15009321671SBarry Smith 15109321671SBarry Smith Level: beginner 15209321671SBarry Smith 15309321671SBarry Smith .seealso: VecNorm(), VecNormBegin(), VecNormEnd(), MatNorm() 15409321671SBarry Smith E*/ 1559dcbbd2bSBarry Smith typedef enum {NORM_1=0,NORM_2=1,NORM_FROBENIUS=2,NORM_INFINITY=3,NORM_1_AND_2=4} NormType; 1566a6fc655SJed Brown PETSC_EXTERN const char *const NormTypes[]; 157cddf8d76SBarry Smith #define NORM_MAX NORM_INFINITY 15809321671SBarry Smith 1599b250c83SBarry Smith /*MC 1609b250c83SBarry Smith NORM_1 - the one norm, ||v|| = sum_i | v_i |. ||A|| = max_j || v_*j ||, maximum column sum 1619b250c83SBarry Smith 1629b250c83SBarry Smith Level: beginner 1639b250c83SBarry Smith 1649b250c83SBarry Smith .seealso: NormType, MatNorm(), VecNorm(), VecNormBegin(), VecNormEnd(), NORM_2, NORM_FROBENIUS, 1659b250c83SBarry Smith NORM_INFINITY, NORM_1_AND_2 1669b250c83SBarry Smith 1679b250c83SBarry Smith M*/ 1689b250c83SBarry Smith 1699b250c83SBarry Smith /*MC 1709b250c83SBarry Smith NORM_2 - the two norm, ||v|| = sqrt(sum_i (v_i)^2) (vectors only) 1719b250c83SBarry Smith 1729b250c83SBarry Smith Level: beginner 1739b250c83SBarry Smith 1749b250c83SBarry Smith .seealso: NormType, MatNorm(), VecNorm(), VecNormBegin(), VecNormEnd(), NORM_1, NORM_FROBENIUS, 1759b250c83SBarry Smith NORM_INFINITY, NORM_1_AND_2 1769b250c83SBarry Smith 1779b250c83SBarry Smith M*/ 1789b250c83SBarry Smith 1799b250c83SBarry Smith /*MC 1809b250c83SBarry Smith NORM_FROBENIUS - ||A|| = sqrt(sum_ij (A_ij)^2), same as NORM_2 for vectors 1819b250c83SBarry Smith 1829b250c83SBarry Smith Level: beginner 1839b250c83SBarry Smith 1849b250c83SBarry Smith .seealso: NormType, MatNorm(), VecNorm(), VecNormBegin(), VecNormEnd(), NORM_1, NORM_2, 1859b250c83SBarry Smith NORM_INFINITY, NORM_1_AND_2 1869b250c83SBarry Smith 1879b250c83SBarry Smith M*/ 1889b250c83SBarry Smith 1899b250c83SBarry Smith /*MC 1909b250c83SBarry Smith NORM_INFINITY - ||v|| = max_i |v_i|. ||A|| = max_i || v_i* ||, maximum row sum 1919b250c83SBarry Smith 1929b250c83SBarry Smith Level: beginner 1939b250c83SBarry Smith 1949b250c83SBarry Smith .seealso: NormType, MatNorm(), VecNorm(), VecNormBegin(), VecNormEnd(), NORM_1, NORM_2, 1959b250c83SBarry Smith NORM_FROBINIUS, NORM_1_AND_2 1969b250c83SBarry Smith 1979b250c83SBarry Smith M*/ 1989b250c83SBarry Smith 1999b250c83SBarry Smith /*MC 2009b250c83SBarry Smith NORM_1_AND_2 - computes both the 1 and 2 norm of a vector 2019b250c83SBarry Smith 2029b250c83SBarry Smith Level: beginner 2039b250c83SBarry Smith 2049b250c83SBarry Smith .seealso: NormType, MatNorm(), VecNorm(), VecNormBegin(), VecNormEnd(), NORM_1, NORM_2, 2059b250c83SBarry Smith NORM_FROBINIUS, NORM_INFINITY 2069b250c83SBarry Smith 2079b250c83SBarry Smith M*/ 2089b250c83SBarry Smith 2099b250c83SBarry Smith /*MC 2109b250c83SBarry Smith NORM_MAX - see NORM_INFINITY 2119b250c83SBarry Smith 212d41222bbSBarry Smith Level: beginner 213d41222bbSBarry Smith 2149b250c83SBarry Smith M*/ 2159b250c83SBarry Smith 216014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecNorm(Vec,NormType,PetscReal *); 217014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecNormAvailable(Vec,NormType,PetscBool *,PetscReal *); 218014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecNormalize(Vec,PetscReal *); 219014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecSum(Vec,PetscScalar*); 220014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecMax(Vec,PetscInt*,PetscReal *); 221014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecMin(Vec,PetscInt*,PetscReal *); 222014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecScale(Vec,PetscScalar); 223014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecCopy(Vec,Vec); 224014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecSetRandom(Vec,PetscRandom); 225014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecSet(Vec,PetscScalar); 226014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecSwap(Vec,Vec); 227014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecAXPY(Vec,PetscScalar,Vec); 228014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecAXPBY(Vec,PetscScalar,PetscScalar,Vec); 229014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecMAXPY(Vec,PetscInt,const PetscScalar[],Vec[]); 230014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecAYPX(Vec,PetscScalar,Vec); 231014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecWAXPY(Vec,PetscScalar,Vec,Vec); 232014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecAXPBYPCZ(Vec,PetscScalar,PetscScalar,PetscScalar,Vec,Vec); 233014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecPointwiseMax(Vec,Vec,Vec); 234014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecPointwiseMaxAbs(Vec,Vec,Vec); 235014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecPointwiseMin(Vec,Vec,Vec); 236014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecPointwiseMult(Vec,Vec,Vec); 237014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecPointwiseDivide(Vec,Vec,Vec); 238014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecMaxPointwiseDivide(Vec,Vec,PetscReal*); 239014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecShift(Vec,PetscScalar); 240014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecReciprocal(Vec); 241014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecPermute(Vec, IS, PetscBool ); 242014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecSqrtAbs(Vec); 243014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecLog(Vec); 244014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecExp(Vec); 245014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecAbs(Vec); 246014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecDuplicate(Vec,Vec*); 247014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecDuplicateVecs(Vec,PetscInt,Vec*[]); 248014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecDestroyVecs(PetscInt, Vec*[]); 249014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecStrideNormAll(Vec,NormType,PetscReal[]); 250014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecStrideMaxAll(Vec,PetscInt [],PetscReal []); 251014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecStrideMinAll(Vec,PetscInt [],PetscReal []); 252014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecStrideScaleAll(Vec,const PetscScalar[]); 253849b11cfSMatthew G. Knepley PETSC_EXTERN PetscErrorCode VecUniqueEntries(Vec,PetscInt*,PetscScalar**); 2544a560884SBarry Smith 255014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecStrideNorm(Vec,PetscInt,NormType,PetscReal*); 256014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecStrideMax(Vec,PetscInt,PetscInt *,PetscReal *); 257014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecStrideMin(Vec,PetscInt,PetscInt *,PetscReal *); 258014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecStrideScale(Vec,PetscInt,PetscScalar); 259014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecStrideSet(Vec,PetscInt,PetscScalar); 260954b3ec6SBarry Smith 261954b3ec6SBarry Smith 262014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecStrideGather(Vec,PetscInt,Vec,InsertMode); 263014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecStrideScatter(Vec,PetscInt,Vec,InsertMode); 264014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecStrideGatherAll(Vec,Vec[],InsertMode); 265014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecStrideScatterAll(Vec[],Vec,InsertMode); 266d2655a18SBarry Smith 267014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecSetValues(Vec,PetscInt,const PetscInt[],const PetscScalar[],InsertMode); 268014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecGetValues(Vec,PetscInt,const PetscInt[],PetscScalar[]); 269014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecAssemblyBegin(Vec); 270014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecAssemblyEnd(Vec); 271014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecStashSetInitialSize(Vec,PetscInt,PetscInt); 272014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecStashView(Vec,PetscViewer); 273ce1779c8SBarry Smith PETSC_EXTERN PetscErrorCode VecStashViewFromOptions(Vec,const char[],const char[]); 274014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecStashGetInfo(Vec,PetscInt*,PetscInt*,PetscInt*,PetscInt*); 27562dc5420SSatish Balay 27630de9b25SBarry Smith /*MC 27730de9b25SBarry Smith VecSetValue - Set a single entry into a vector. 27830de9b25SBarry Smith 27930de9b25SBarry Smith Synopsis: 280*aaa7dc30SBarry Smith #include <petscvec.h> 2818122439eSJed Brown PetscErrorCode VecSetValue(Vec v,PetscInt row,PetscScalar value, InsertMode mode); 28230de9b25SBarry Smith 28330de9b25SBarry Smith Not Collective 28430de9b25SBarry Smith 28530de9b25SBarry Smith Input Parameters: 28630de9b25SBarry Smith + v - the vector 28730de9b25SBarry Smith . row - the row location of the entry 28830de9b25SBarry Smith . value - the value to insert 28930de9b25SBarry Smith - mode - either INSERT_VALUES or ADD_VALUES 29030de9b25SBarry Smith 29130de9b25SBarry Smith Notes: 29230de9b25SBarry Smith For efficiency one should use VecSetValues() and set several or 29330de9b25SBarry Smith many values simultaneously if possible. 29430de9b25SBarry Smith 2951d73ed98SBarry Smith These values may be cached, so VecAssemblyBegin() and VecAssemblyEnd() 2961d73ed98SBarry Smith MUST be called after all calls to VecSetValues() have been completed. 2971d73ed98SBarry Smith 2981d73ed98SBarry Smith VecSetValues() uses 0-based indices in Fortran as well as in C. 2991d73ed98SBarry Smith 3001d73ed98SBarry Smith Level: beginner 3011d73ed98SBarry Smith 3021d73ed98SBarry Smith .seealso: VecSetValues(), VecAssemblyBegin(), VecAssemblyEnd(), VecSetValuesBlockedLocal(), VecSetValueLocal() 3031d73ed98SBarry Smith M*/ 30450755921SBarry Smith PETSC_STATIC_INLINE PetscErrorCode VecSetValue(Vec v,PetscInt i,PetscScalar va,InsertMode mode) {return VecSetValues(v,1,&i,&va,mode);} 3051d73ed98SBarry Smith 30630de9b25SBarry Smith 307014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecSetBlockSize(Vec,PetscInt); 308014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecGetBlockSize(Vec,PetscInt*); 309014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecSetValuesBlocked(Vec,PetscInt,const PetscInt[],const PetscScalar[],InsertMode); 3108ed539a5SBarry Smith 311fd487807SMatthew Knepley /* Dynamic creation and loading functions */ 312140e18c1SBarry Smith PETSC_EXTERN PetscFunctionList VecList; 313014dd563SJed Brown PETSC_EXTERN PetscBool VecRegisterAllCalled; 31419fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode VecSetType(Vec, VecType); 31519fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode VecGetType(Vec, VecType *); 316bdf89e91SBarry Smith PETSC_EXTERN PetscErrorCode VecRegister(const char[],PetscErrorCode (*)(Vec)); 317607a6623SBarry Smith PETSC_EXTERN PetscErrorCode VecRegisterAll(void); 31830de9b25SBarry Smith 319014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecScatterCreate(Vec,IS,Vec,IS,VecScatter *); 320014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecScatterCreateEmpty(MPI_Comm,VecScatter *); 321014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecScatterCreateLocal(VecScatter,PetscInt,const PetscInt[],const PetscInt[],const PetscInt[],PetscInt,const PetscInt[],const PetscInt[],const PetscInt[],PetscInt); 322014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecScatterBegin(VecScatter,Vec,Vec,InsertMode,ScatterMode); 323014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecScatterEnd(VecScatter,Vec,Vec,InsertMode,ScatterMode); 324014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecScatterDestroy(VecScatter*); 325014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecScatterCopy(VecScatter,VecScatter *); 326014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecScatterView(VecScatter,PetscViewer); 327ce1779c8SBarry Smith PETSC_STATIC_INLINE PetscErrorCode VecScatterViewFromOptions(VecScatter A,const char prefix[],const char name[]) {return PetscObjectViewFromOptions((PetscObject)A,prefix,name);} 328014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecScatterRemap(VecScatter,PetscInt *,PetscInt*); 329014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecScatterGetMerged(VecScatter,PetscBool *); 3302195c698SBarry Smith 331014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecGetArray4d(Vec,PetscInt,PetscInt,PetscInt,PetscInt,PetscInt,PetscInt,PetscInt,PetscInt,PetscScalar****[]); 332014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecRestoreArray4d(Vec,PetscInt,PetscInt,PetscInt,PetscInt,PetscInt,PetscInt,PetscInt,PetscInt,PetscScalar****[]); 333014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecGetArray3d(Vec,PetscInt,PetscInt,PetscInt,PetscInt,PetscInt,PetscInt,PetscScalar***[]); 334014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecRestoreArray3d(Vec,PetscInt,PetscInt,PetscInt,PetscInt,PetscInt,PetscInt,PetscScalar***[]); 335014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecGetArray2d(Vec,PetscInt,PetscInt,PetscInt,PetscInt,PetscScalar**[]); 336014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecRestoreArray2d(Vec,PetscInt,PetscInt,PetscInt,PetscInt,PetscScalar**[]); 337014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecGetArray1d(Vec,PetscInt,PetscInt,PetscScalar *[]); 338014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecRestoreArray1d(Vec,PetscInt,PetscInt,PetscScalar *[]); 339ab360428SBarry Smith 340014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecPlaceArray(Vec,const PetscScalar[]); 341014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecResetArray(Vec); 342014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecReplaceArray(Vec,const PetscScalar[]); 343014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecGetArrays(const Vec[],PetscInt,PetscScalar**[]); 344014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecRestoreArrays(const Vec[],PetscInt,PetscScalar**[]); 34584cb2905SBarry Smith 346014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecView(Vec,PetscViewer); 347014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecEqual(Vec,Vec,PetscBool *); 348014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecLoad(Vec, PetscViewer); 3498ed539a5SBarry Smith 350014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecGetSize(Vec,PetscInt*); 351014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecGetLocalSize(Vec,PetscInt*); 352014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecGetOwnershipRange(Vec,PetscInt*,PetscInt*); 353014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecGetOwnershipRanges(Vec,const PetscInt *[]); 3548ed539a5SBarry Smith 355014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecSetLocalToGlobalMapping(Vec,ISLocalToGlobalMapping); 356014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecSetValuesLocal(Vec,PetscInt,const PetscInt[],const PetscScalar[],InsertMode); 35788b03592SBarry Smith 35888b03592SBarry Smith /*MC 35988b03592SBarry Smith VecSetValueLocal - Set a single entry into a vector using the local numbering 36088b03592SBarry Smith 36188b03592SBarry Smith Synopsis: 362*aaa7dc30SBarry Smith #include <petscvec.h> 3638122439eSJed Brown PetscErrorCode VecSetValueLocal(Vec v,PetscInt row,PetscScalar value, InsertMode mode); 36488b03592SBarry Smith 36588b03592SBarry Smith Not Collective 36688b03592SBarry Smith 36788b03592SBarry Smith Input Parameters: 36888b03592SBarry Smith + v - the vector 36988b03592SBarry Smith . row - the row location of the entry 37088b03592SBarry Smith . value - the value to insert 37188b03592SBarry Smith - mode - either INSERT_VALUES or ADD_VALUES 37288b03592SBarry Smith 37388b03592SBarry Smith Notes: 37488b03592SBarry Smith For efficiency one should use VecSetValues() and set several or 37588b03592SBarry Smith many values simultaneously if possible. 37688b03592SBarry Smith 37788b03592SBarry Smith These values may be cached, so VecAssemblyBegin() and VecAssemblyEnd() 37888b03592SBarry Smith MUST be called after all calls to VecSetValues() have been completed. 37988b03592SBarry Smith 38088b03592SBarry Smith VecSetValues() uses 0-based indices in Fortran as well as in C. 38188b03592SBarry Smith 38288b03592SBarry Smith Level: beginner 38388b03592SBarry Smith 38488b03592SBarry Smith .seealso: VecSetValues(), VecAssemblyBegin(), VecAssemblyEnd(), VecSetValuesBlockedLocal(), VecSetValue() 38588b03592SBarry Smith M*/ 38688b03592SBarry Smith PETSC_STATIC_INLINE PetscErrorCode VecSetValueLocal(Vec v,PetscInt i,PetscScalar va,InsertMode mode) {return VecSetValuesLocal(v,1,&i,&va,mode);} 38788b03592SBarry Smith 388014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecSetLocalToGlobalMappingBlock(Vec,ISLocalToGlobalMapping); 389014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecSetValuesBlockedLocal(Vec,PetscInt,const PetscInt[],const PetscScalar[],InsertMode); 390014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecGetLocalToGlobalMappingBlock(Vec,ISLocalToGlobalMapping*); 391014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecGetLocalToGlobalMapping(Vec,ISLocalToGlobalMapping*); 39290f02eecSBarry Smith 393014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecDotBegin(Vec,Vec,PetscScalar *); 394014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecDotEnd(Vec,Vec,PetscScalar *); 395014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecTDotBegin(Vec,Vec,PetscScalar *); 396014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecTDotEnd(Vec,Vec,PetscScalar *); 397014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecNormBegin(Vec,NormType,PetscReal *); 398014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecNormEnd(Vec,NormType,PetscReal *); 399d3c178dbSBarry Smith 400014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecMDotBegin(Vec,PetscInt,const Vec[],PetscScalar[]); 401014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecMDotEnd(Vec,PetscInt,const Vec[],PetscScalar[]); 402014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecMTDotBegin(Vec,PetscInt,const Vec[],PetscScalar[]); 403014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecMTDotEnd(Vec,PetscInt,const Vec[],PetscScalar[]); 404014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscCommSplitReductionBegin(MPI_Comm); 405a751f32aSSatish Balay 406a751f32aSSatish Balay 4079533e83fSBarry Smith typedef enum {VEC_IGNORE_OFF_PROC_ENTRIES,VEC_IGNORE_NEGATIVE_INDICES} VecOption; 408014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecSetOption(Vec,VecOption,PetscBool ); 40990f02eecSBarry Smith 4105c0c2446SJed Brown PETSC_EXTERN PetscErrorCode VecGetArray(Vec,PetscScalar**); 4115c0c2446SJed Brown PETSC_EXTERN PetscErrorCode VecGetArrayRead(Vec,const PetscScalar**); 4125c0c2446SJed Brown PETSC_EXTERN PetscErrorCode VecRestoreArray(Vec,PetscScalar**); 4135c0c2446SJed Brown PETSC_EXTERN PetscErrorCode VecRestoreArrayRead(Vec,const PetscScalar**); 414e1fa1e0fSSatish Balay 41562796dfbSBarry Smith PETSC_EXTERN PetscErrorCode VecValidValues(Vec,PetscInt,PetscBool); 416f7ecc322SBarry Smith 417014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecContourScale(Vec,PetscReal,PetscReal); 418522c5e43SBarry Smith 41915091d37SBarry Smith /* 42015091d37SBarry Smith These numbers need to match the entries in 4213c94ec11SBarry Smith the function table in vecimpl.h 42215091d37SBarry Smith */ 4232dcb2ebcSBarry Smith typedef enum { VECOP_VIEW = 33, VECOP_LOAD = 41, VECOP_DUPLICATE = 0} VecOperation; 424014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecSetOperation(Vec,VecOperation,void(*)(void)); 425b19c1e4cSBarry Smith 426e182c471SBarry Smith /* 427e182c471SBarry Smith Routines for dealing with ghosted vectors: 428e182c471SBarry Smith vectors with ghost elements at the end of the array. 429e182c471SBarry Smith */ 430014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecMPISetGhost(Vec,PetscInt,const PetscInt[]); 431014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecCreateGhost(MPI_Comm,PetscInt,PetscInt,PetscInt,const PetscInt[],Vec*); 432014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecCreateGhostWithArray(MPI_Comm,PetscInt,PetscInt,PetscInt,const PetscInt[],const PetscScalar[],Vec*); 433014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecCreateGhostBlock(MPI_Comm,PetscInt,PetscInt,PetscInt,PetscInt,const PetscInt[],Vec*); 434014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecCreateGhostBlockWithArray(MPI_Comm,PetscInt,PetscInt,PetscInt,PetscInt,const PetscInt[],const PetscScalar[],Vec*); 435014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecGhostGetLocalForm(Vec,Vec*); 436014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecGhostRestoreLocalForm(Vec,Vec*); 4373efe6655SBarry Smith PETSC_EXTERN PetscErrorCode VecGhostIsLocalForm(Vec,Vec,PetscBool*); 438014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecGhostUpdateBegin(Vec,InsertMode,ScatterMode); 439014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecGhostUpdateEnd(Vec,InsertMode,ScatterMode); 440e182c471SBarry Smith 441014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecConjugate(Vec); 44234233285SBarry Smith 443014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecScatterCreateToAll(Vec,VecScatter*,Vec*); 444014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecScatterCreateToZero(Vec,VecScatter*,Vec*); 445bba1ac68SSatish Balay 446014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscViewerMathematicaGetVector(PetscViewer, Vec); 447014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscViewerMathematicaPutVector(PetscViewer, Vec); 4487dbadf16SMatthew Knepley 449d59c15a7SBarry Smith /*S 450d59c15a7SBarry Smith Vecs - Collection of vectors where the data for the vectors is stored in 451759e7b9cSHong Zhang one contiguous memory 452d59c15a7SBarry Smith 453d59c15a7SBarry Smith Level: advanced 454d59c15a7SBarry Smith 455d59c15a7SBarry Smith Notes: 456d59c15a7SBarry Smith Temporary construct for handling multiply right hand side solves 457d59c15a7SBarry Smith 458d59c15a7SBarry Smith This is faked by storing a single vector that has enough array space for 459d59c15a7SBarry Smith n vectors 460d59c15a7SBarry Smith 461d59c15a7SBarry Smith Concepts: parallel decomposition 462d59c15a7SBarry Smith 463d59c15a7SBarry Smith S*/ 46495fbd943SSatish Balay struct _n_Vecs {PetscInt n; Vec v;}; 46595fbd943SSatish Balay typedef struct _n_Vecs* Vecs; 466e1317eeeSBarry Smith PETSC_EXTERN PetscErrorCode VecsDestroy(Vecs); 467e1317eeeSBarry Smith PETSC_EXTERN PetscErrorCode VecsCreateSeq(MPI_Comm,PetscInt,PetscInt,Vecs*); 468e1317eeeSBarry Smith PETSC_EXTERN PetscErrorCode VecsCreateSeqWithArray(MPI_Comm,PetscInt,PetscInt,PetscScalar*,Vecs*); 469e1317eeeSBarry Smith PETSC_EXTERN PetscErrorCode VecsDuplicate(Vecs,Vecs*); 470e9fa29b7SSatish Balay 4718154be41SBarry Smith #if defined(PETSC_HAVE_CUSP) 472a5891931SBarry Smith typedef struct _p_PetscCUSPIndices* PetscCUSPIndices; 47325ec7418SKarl Rupp typedef struct _p_VecScatterCUSPIndices_StoS* VecScatterCUSPIndices_StoS; 47425ec7418SKarl Rupp typedef struct _p_VecScatterCUSPIndices_PtoP* VecScatterCUSPIndices_PtoP; 475014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecCUSPCopyToGPUSome_Public(Vec,PetscCUSPIndices); 476014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecCUSPCopyFromGPUSome_Public(Vec,PetscCUSPIndices); 477014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecScatterInitializeForGPU(VecScatter,Vec,ScatterMode); 478014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecScatterFinalizeForGPU(VecScatter); 479014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecCreateSeqCUSP(MPI_Comm,PetscInt,Vec*); 480014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecCreateMPICUSP(MPI_Comm,PetscInt,PetscInt,Vec*); 481a5891931SBarry Smith #endif 482e9fa29b7SSatish Balay 483b17c682bSKarl Rupp #if defined(PETSC_HAVE_VIENNACL) 484b17c682bSKarl Rupp typedef struct _p_PetscViennaCLIndices* PetscViennaCLIndices; 485b17c682bSKarl Rupp PETSC_EXTERN PetscErrorCode PetscViennaCLIndicesCreate(PetscInt, PetscInt*,PetscInt, PetscInt*,PetscViennaCLIndices*); 486b17c682bSKarl Rupp PETSC_EXTERN PetscErrorCode PetscViennaCLIndicesDestroy(PetscViennaCLIndices*); 487b17c682bSKarl Rupp PETSC_EXTERN PetscErrorCode VecViennaCLCopyToGPUSome_Public(Vec,PetscViennaCLIndices); 488b17c682bSKarl Rupp PETSC_EXTERN PetscErrorCode VecViennaCLCopyFromGPUSome_Public(Vec,PetscViennaCLIndices); 489b17c682bSKarl Rupp PETSC_EXTERN PetscErrorCode VecCreateSeqViennaCL(MPI_Comm,PetscInt,Vec*); 490b17c682bSKarl Rupp PETSC_EXTERN PetscErrorCode VecCreateMPIViennaCL(MPI_Comm,PetscInt,PetscInt,Vec*); 491b17c682bSKarl Rupp #endif 492b17c682bSKarl Rupp 493014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecNestGetSubVecs(Vec,PetscInt*,Vec**); 494014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecNestGetSubVec(Vec,PetscInt,Vec*); 495014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecNestSetSubVecs(Vec,PetscInt,PetscInt*,Vec*); 496014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecNestSetSubVec(Vec,PetscInt,Vec); 497014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecCreateNest(MPI_Comm,PetscInt,IS*,Vec*,Vec*); 498014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecNestGetSize(Vec,PetscInt*); 49945b63f25SDmitry Karpeev 500ab352700SBarry Smith PETSC_EXTERN PetscErrorCode PetscOptionsVec(const char[],const char[],const char[],Vec,PetscBool*); 5014325cce7SMatthew G Knepley PETSC_EXTERN PetscErrorCode VecChop(Vec,PetscReal); 502ab352700SBarry Smith 503077aedafSJed Brown PETSC_EXTERN PetscErrorCode VecGetLayout(Vec,PetscLayout*); 504077aedafSJed Brown PETSC_EXTERN PetscErrorCode VecSetLayout(Vec,PetscLayout); 5059a6d0b0bSJed Brown 5069a6d0b0bSJed Brown PETSC_EXTERN PetscErrorCode PetscSectionVecView(PetscSection, Vec, PetscViewer); 5079a6d0b0bSJed Brown PETSC_EXTERN PetscErrorCode VecGetValuesSection(Vec, PetscSection, PetscInt, PetscScalar **); 5089a6d0b0bSJed Brown PETSC_EXTERN PetscErrorCode VecSetValuesSection(Vec, PetscSection, PetscInt, PetscScalar [], InsertMode); 5099a6d0b0bSJed Brown 5102eac72dbSBarry Smith #endif 5112b82984cSSatish Balay 512