12eac72dbSBarry Smith /* 237f753daSBarry Smith Defines the vector component of PETSc. Vectors generally represent 337f753daSBarry Smith degrees of freedom for finite element/finite difference functions 484cb2905SBarry Smith on a grid. They have more mathematical structure then simple arrays. 52eac72dbSBarry Smith */ 62eac72dbSBarry Smith 70a835dfdSSatish Balay #ifndef __PETSCVEC_H 80a835dfdSSatish Balay #define __PETSCVEC_H 92c8e378dSBarry Smith #include <petscis.h> 10665c2dedSJed Brown #include <petscviewer.h> 112eac72dbSBarry Smith 1209321671SBarry Smith /*S 1309321671SBarry Smith Vec - Abstract PETSc vector object 1409321671SBarry Smith 1509321671SBarry Smith Level: beginner 1609321671SBarry Smith 1709321671SBarry Smith Concepts: field variables, unknowns, arrays 1809321671SBarry Smith 1909321671SBarry Smith .seealso: VecCreate(), VecType, VecSetType() 2009321671SBarry Smith S*/ 21f09e8eb9SSatish Balay typedef struct _p_Vec* Vec; 2209321671SBarry Smith 2309321671SBarry Smith /*S 2409321671SBarry Smith VecScatter - Object used to manage communication of data 2509321671SBarry Smith between vectors in parallel. Manages both scatters and gathers 2609321671SBarry Smith 2709321671SBarry Smith Level: beginner 2809321671SBarry Smith 2909321671SBarry Smith Concepts: scatter 3009321671SBarry Smith 3109321671SBarry Smith .seealso: VecScatterCreate(), VecScatterBegin(), VecScatterEnd() 3209321671SBarry Smith S*/ 33f09e8eb9SSatish Balay typedef struct _p_VecScatter* VecScatter; 3409321671SBarry Smith 3509321671SBarry Smith /*E 36398c84b2SBarry Smith ScatterMode - Determines the direction of a scatter 37398c84b2SBarry Smith 38398c84b2SBarry Smith Level: beginner 39398c84b2SBarry Smith 40398c84b2SBarry Smith .seealso: VecScatter, VecScatterBegin(), VecScatterEnd() 41398c84b2SBarry Smith E*/ 42398c84b2SBarry Smith typedef enum {SCATTER_FORWARD=0, SCATTER_REVERSE=1, SCATTER_FORWARD_LOCAL=2, SCATTER_REVERSE_LOCAL=3, SCATTER_LOCAL=2} ScatterMode; 43398c84b2SBarry Smith 44398c84b2SBarry Smith /*MC 45398c84b2SBarry Smith SCATTER_FORWARD - Scatters the values as dictated by the VecScatterCreate() call 46398c84b2SBarry Smith 47398c84b2SBarry Smith Level: beginner 48398c84b2SBarry Smith 49398c84b2SBarry Smith .seealso: VecScatter, ScatterMode, VecScatterCreate(), VecScatterBegin(), VecScatterEnd(), SCATTER_REVERSE, SCATTER_FORWARD_LOCAL, 50398c84b2SBarry Smith SCATTER_REVERSE_LOCAL 51398c84b2SBarry Smith 52398c84b2SBarry Smith M*/ 53398c84b2SBarry Smith 54398c84b2SBarry Smith /*MC 55398c84b2SBarry Smith SCATTER_REVERSE - Moves the values in the opposite direction then the directions indicated in 56398c84b2SBarry Smith in the VecScatterCreate() 57398c84b2SBarry Smith 58398c84b2SBarry Smith Level: beginner 59398c84b2SBarry Smith 60398c84b2SBarry Smith .seealso: VecScatter, ScatterMode, VecScatterCreate(), VecScatterBegin(), VecScatterEnd(), SCATTER_FORWARD, SCATTER_FORWARD_LOCAL, 61398c84b2SBarry Smith SCATTER_REVERSE_LOCAL 62398c84b2SBarry Smith 63398c84b2SBarry Smith M*/ 64398c84b2SBarry Smith 65398c84b2SBarry Smith /*MC 66398c84b2SBarry Smith SCATTER_FORWARD_LOCAL - Scatters the values as dictated by the VecScatterCreate() call except NO parallel communication 67398c84b2SBarry Smith is done. Any variables that have be moved between processes are ignored 68398c84b2SBarry Smith 69398c84b2SBarry Smith Level: developer 70398c84b2SBarry Smith 71398c84b2SBarry Smith .seealso: VecScatter, ScatterMode, VecScatterCreate(), VecScatterBegin(), VecScatterEnd(), SCATTER_REVERSE, SCATTER_FORWARD, 72398c84b2SBarry Smith SCATTER_REVERSE_LOCAL 73398c84b2SBarry Smith 74398c84b2SBarry Smith M*/ 75398c84b2SBarry Smith 76398c84b2SBarry Smith /*MC 77398c84b2SBarry Smith SCATTER_REVERSE_LOCAL - Moves the values in the opposite direction then the directions indicated in 78398c84b2SBarry Smith in the VecScatterCreate() except NO parallel communication 79398c84b2SBarry Smith is done. Any variables that have be moved between processes are ignored 80398c84b2SBarry Smith 81398c84b2SBarry Smith Level: developer 82398c84b2SBarry Smith 83398c84b2SBarry Smith .seealso: VecScatter, ScatterMode, VecScatterCreate(), VecScatterBegin(), VecScatterEnd(), SCATTER_FORWARD, SCATTER_FORWARD_LOCAL, 84398c84b2SBarry Smith SCATTER_REVERSE 85398c84b2SBarry Smith 86398c84b2SBarry Smith M*/ 87398c84b2SBarry Smith 8876bdecfbSBarry Smith /*J 898f6c3df8SBarry Smith VecType - String with the name of a PETSc vector 9009321671SBarry Smith 9109321671SBarry Smith Level: beginner 9209321671SBarry Smith 938f6c3df8SBarry Smith .seealso: VecSetType(), Vec, VecCreate(), VecDestroy() 9476bdecfbSBarry Smith J*/ 9519fd82e9SBarry Smith typedef const char* VecType; 960676abe4SMatthew Knepley #define VECSEQ "seq" 970676abe4SMatthew Knepley #define VECMPI "mpi" 98f48c50deSBarry Smith #define VECSTANDARD "standard" /* seq on one process and mpi on several */ 990676abe4SMatthew Knepley #define VECSHARED "shared" 100765467adSMatthew Knepley #define VECSIEVE "sieve" 1018154be41SBarry Smith #define VECSEQCUSP "seqcusp" 1028154be41SBarry Smith #define VECMPICUSP "mpicusp" 1038154be41SBarry Smith #define VECCUSP "cusp" /* seqcusp on one process and mpicusp on several */ 104b17c682bSKarl Rupp #define VECSEQVIENNACL "seqviennacl" 105b17c682bSKarl Rupp #define VECMPIVIENNACL "mpiviennacl" 106b17c682bSKarl Rupp #define VECVIENNACL "viennacl" /* seqviennacl on one process and mpiviennacl on several */ 1071aae2881SJed Brown #define VECNEST "nest" 1081bf2b38bSKerry Stevens #define VECSEQPTHREAD "seqpthread" 1094b71561bSShri Abhyankar #define VECMPIPTHREAD "mpipthread" 110bf2c1783SBarry Smith #define VECPTHREAD "pthread" /* seqpthread on one process and mpipthread on several */ 1112eac72dbSBarry Smith 1124b71561bSShri Abhyankar 113fd487807SMatthew Knepley /* Logging support */ 1140700a824SBarry Smith #define VEC_FILE_CLASSID 1211214 115014dd563SJed Brown PETSC_EXTERN PetscClassId VEC_CLASSID; 116014dd563SJed Brown PETSC_EXTERN PetscClassId VEC_SCATTER_CLASSID; 1178ba1e511SMatthew Knepley 11845b63f25SDmitry Karpeev 119607a6623SBarry Smith PETSC_EXTERN PetscErrorCode VecInitializePackage(void); 120014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecFinalizePackage(void); 121fd487807SMatthew Knepley 122014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecCreate(MPI_Comm,Vec*); 123014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecCreateSeq(MPI_Comm,PetscInt,Vec*); 124014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecCreateMPI(MPI_Comm,PetscInt,PetscInt,Vec*); 125014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecCreateSeqWithArray(MPI_Comm,PetscInt,PetscInt,const PetscScalar[],Vec*); 126014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecCreateMPIWithArray(MPI_Comm,PetscInt,PetscInt,PetscInt,const PetscScalar[],Vec*); 127014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecCreateShared(MPI_Comm,PetscInt,PetscInt,Vec*); 128014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecSetFromOptions(Vec); 129146574abSBarry Smith PETSC_EXTERN PetscErrorCode VecViewFromOptions(Vec,const char[],const char[]); 1300d2bece7SBarry Smith 131014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecSetUp(Vec); 132014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecDestroy(Vec*); 133014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecZeroEntries(Vec); 134014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecSetOptionsPrefix(Vec,const char[]); 135014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecAppendOptionsPrefix(Vec,const char[]); 136014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecGetOptionsPrefix(Vec,const char*[]); 137f69a0ea3SMatthew Knepley 138014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecSetSizes(Vec,PetscInt,PetscInt); 139fd487807SMatthew Knepley 14052b6e47cSBarry Smith PETSC_EXTERN PetscErrorCode VecDotNorm2(Vec,Vec,PetscScalar*,PetscReal*); 141014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecDot(Vec,Vec,PetscScalar*); 14267392de3SBarry Smith PETSC_EXTERN PetscErrorCode VecDotRealPart(Vec,Vec,PetscReal*); 143014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecTDot(Vec,Vec,PetscScalar*); 144014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecMDot(Vec,PetscInt,const Vec[],PetscScalar[]); 145014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecMTDot(Vec,PetscInt,const Vec[],PetscScalar[]); 146014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecGetSubVector(Vec,IS,Vec*); 147014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecRestoreSubVector(Vec,IS,Vec*); 148cddf8d76SBarry Smith 14909321671SBarry Smith /*E 15009321671SBarry Smith NormType - determines what type of norm to compute 15109321671SBarry Smith 15209321671SBarry Smith Level: beginner 15309321671SBarry Smith 15409321671SBarry Smith .seealso: VecNorm(), VecNormBegin(), VecNormEnd(), MatNorm() 15509321671SBarry Smith E*/ 1569dcbbd2bSBarry Smith typedef enum {NORM_1=0,NORM_2=1,NORM_FROBENIUS=2,NORM_INFINITY=3,NORM_1_AND_2=4} NormType; 1576a6fc655SJed Brown PETSC_EXTERN const char *const NormTypes[]; 158cddf8d76SBarry Smith #define NORM_MAX NORM_INFINITY 15909321671SBarry Smith 1609b250c83SBarry Smith /*MC 1619b250c83SBarry Smith NORM_1 - the one norm, ||v|| = sum_i | v_i |. ||A|| = max_j || v_*j ||, maximum column sum 1629b250c83SBarry Smith 1639b250c83SBarry Smith Level: beginner 1649b250c83SBarry Smith 1659b250c83SBarry Smith .seealso: NormType, MatNorm(), VecNorm(), VecNormBegin(), VecNormEnd(), NORM_2, NORM_FROBENIUS, 1669b250c83SBarry Smith NORM_INFINITY, NORM_1_AND_2 1679b250c83SBarry Smith 1689b250c83SBarry Smith M*/ 1699b250c83SBarry Smith 1709b250c83SBarry Smith /*MC 1719b250c83SBarry Smith NORM_2 - the two norm, ||v|| = sqrt(sum_i (v_i)^2) (vectors only) 1729b250c83SBarry Smith 1739b250c83SBarry Smith Level: beginner 1749b250c83SBarry Smith 1759b250c83SBarry Smith .seealso: NormType, MatNorm(), VecNorm(), VecNormBegin(), VecNormEnd(), NORM_1, NORM_FROBENIUS, 1769b250c83SBarry Smith NORM_INFINITY, NORM_1_AND_2 1779b250c83SBarry Smith 1789b250c83SBarry Smith M*/ 1799b250c83SBarry Smith 1809b250c83SBarry Smith /*MC 1819b250c83SBarry Smith NORM_FROBENIUS - ||A|| = sqrt(sum_ij (A_ij)^2), same as NORM_2 for vectors 1829b250c83SBarry Smith 1839b250c83SBarry Smith Level: beginner 1849b250c83SBarry Smith 1859b250c83SBarry Smith .seealso: NormType, MatNorm(), VecNorm(), VecNormBegin(), VecNormEnd(), NORM_1, NORM_2, 1869b250c83SBarry Smith NORM_INFINITY, NORM_1_AND_2 1879b250c83SBarry Smith 1889b250c83SBarry Smith M*/ 1899b250c83SBarry Smith 1909b250c83SBarry Smith /*MC 1919b250c83SBarry Smith NORM_INFINITY - ||v|| = max_i |v_i|. ||A|| = max_i || v_i* ||, maximum row sum 1929b250c83SBarry Smith 1939b250c83SBarry Smith Level: beginner 1949b250c83SBarry Smith 1959b250c83SBarry Smith .seealso: NormType, MatNorm(), VecNorm(), VecNormBegin(), VecNormEnd(), NORM_1, NORM_2, 1969b250c83SBarry Smith NORM_FROBINIUS, NORM_1_AND_2 1979b250c83SBarry Smith 1989b250c83SBarry Smith M*/ 1999b250c83SBarry Smith 2009b250c83SBarry Smith /*MC 2019b250c83SBarry Smith NORM_1_AND_2 - computes both the 1 and 2 norm of a vector 2029b250c83SBarry Smith 2039b250c83SBarry Smith Level: beginner 2049b250c83SBarry Smith 2059b250c83SBarry Smith .seealso: NormType, MatNorm(), VecNorm(), VecNormBegin(), VecNormEnd(), NORM_1, NORM_2, 2069b250c83SBarry Smith NORM_FROBINIUS, NORM_INFINITY 2079b250c83SBarry Smith 2089b250c83SBarry Smith M*/ 2099b250c83SBarry Smith 2109b250c83SBarry Smith /*MC 2119b250c83SBarry Smith NORM_MAX - see NORM_INFINITY 2129b250c83SBarry Smith 213d41222bbSBarry Smith Level: beginner 214d41222bbSBarry Smith 2159b250c83SBarry Smith M*/ 2169b250c83SBarry Smith 217014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecNorm(Vec,NormType,PetscReal *); 218014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecNormAvailable(Vec,NormType,PetscBool *,PetscReal *); 219014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecNormalize(Vec,PetscReal *); 220014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecSum(Vec,PetscScalar*); 221014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecMax(Vec,PetscInt*,PetscReal *); 222014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecMin(Vec,PetscInt*,PetscReal *); 223014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecScale(Vec,PetscScalar); 224014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecCopy(Vec,Vec); 225014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecSetRandom(Vec,PetscRandom); 226014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecSet(Vec,PetscScalar); 227014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecSwap(Vec,Vec); 228014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecAXPY(Vec,PetscScalar,Vec); 229014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecAXPBY(Vec,PetscScalar,PetscScalar,Vec); 230014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecMAXPY(Vec,PetscInt,const PetscScalar[],Vec[]); 231014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecAYPX(Vec,PetscScalar,Vec); 232014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecWAXPY(Vec,PetscScalar,Vec,Vec); 233014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecAXPBYPCZ(Vec,PetscScalar,PetscScalar,PetscScalar,Vec,Vec); 234014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecPointwiseMax(Vec,Vec,Vec); 235014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecPointwiseMaxAbs(Vec,Vec,Vec); 236014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecPointwiseMin(Vec,Vec,Vec); 237014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecPointwiseMult(Vec,Vec,Vec); 238014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecPointwiseDivide(Vec,Vec,Vec); 239014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecMaxPointwiseDivide(Vec,Vec,PetscReal*); 240014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecShift(Vec,PetscScalar); 241014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecReciprocal(Vec); 242014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecPermute(Vec, IS, PetscBool ); 243014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecSqrtAbs(Vec); 244014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecLog(Vec); 245014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecExp(Vec); 246014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecAbs(Vec); 247014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecDuplicate(Vec,Vec*); 248014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecDuplicateVecs(Vec,PetscInt,Vec*[]); 249014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecDestroyVecs(PetscInt, Vec*[]); 250014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecStrideNormAll(Vec,NormType,PetscReal[]); 251014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecStrideMaxAll(Vec,PetscInt [],PetscReal []); 252014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecStrideMinAll(Vec,PetscInt [],PetscReal []); 253014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecStrideScaleAll(Vec,const PetscScalar[]); 254849b11cfSMatthew G. Knepley PETSC_EXTERN PetscErrorCode VecUniqueEntries(Vec,PetscInt*,PetscScalar**); 2554a560884SBarry Smith 256014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecStrideNorm(Vec,PetscInt,NormType,PetscReal*); 257014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecStrideMax(Vec,PetscInt,PetscInt *,PetscReal *); 258014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecStrideMin(Vec,PetscInt,PetscInt *,PetscReal *); 259014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecStrideScale(Vec,PetscInt,PetscScalar); 260014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecStrideSet(Vec,PetscInt,PetscScalar); 261954b3ec6SBarry Smith 262954b3ec6SBarry Smith 263014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecStrideGather(Vec,PetscInt,Vec,InsertMode); 264014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecStrideScatter(Vec,PetscInt,Vec,InsertMode); 265014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecStrideGatherAll(Vec,Vec[],InsertMode); 266014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecStrideScatterAll(Vec[],Vec,InsertMode); 267d2655a18SBarry Smith 268014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecSetValues(Vec,PetscInt,const PetscInt[],const PetscScalar[],InsertMode); 269014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecGetValues(Vec,PetscInt,const PetscInt[],PetscScalar[]); 270014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecAssemblyBegin(Vec); 271014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecAssemblyEnd(Vec); 272014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecStashSetInitialSize(Vec,PetscInt,PetscInt); 273014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecStashView(Vec,PetscViewer); 274014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecStashGetInfo(Vec,PetscInt*,PetscInt*,PetscInt*,PetscInt*); 27562dc5420SSatish Balay 27630de9b25SBarry Smith /*MC 27730de9b25SBarry Smith VecSetValue - Set a single entry into a vector. 27830de9b25SBarry Smith 27930de9b25SBarry Smith Synopsis: 280f2ba6396SBarry Smith #include "petscvec.h" 2818122439eSJed Brown PetscErrorCode VecSetValue(Vec v,PetscInt row,PetscScalar value, InsertMode mode); 28230de9b25SBarry Smith 28330de9b25SBarry Smith Not Collective 28430de9b25SBarry Smith 28530de9b25SBarry Smith Input Parameters: 28630de9b25SBarry Smith + v - the vector 28730de9b25SBarry Smith . row - the row location of the entry 28830de9b25SBarry Smith . value - the value to insert 28930de9b25SBarry Smith - mode - either INSERT_VALUES or ADD_VALUES 29030de9b25SBarry Smith 29130de9b25SBarry Smith Notes: 29230de9b25SBarry Smith For efficiency one should use VecSetValues() and set several or 29330de9b25SBarry Smith many values simultaneously if possible. 29430de9b25SBarry Smith 2951d73ed98SBarry Smith These values may be cached, so VecAssemblyBegin() and VecAssemblyEnd() 2961d73ed98SBarry Smith MUST be called after all calls to VecSetValues() have been completed. 2971d73ed98SBarry Smith 2981d73ed98SBarry Smith VecSetValues() uses 0-based indices in Fortran as well as in C. 2991d73ed98SBarry Smith 3001d73ed98SBarry Smith Level: beginner 3011d73ed98SBarry Smith 3021d73ed98SBarry Smith .seealso: VecSetValues(), VecAssemblyBegin(), VecAssemblyEnd(), VecSetValuesBlockedLocal(), VecSetValueLocal() 3031d73ed98SBarry Smith M*/ 30450755921SBarry Smith PETSC_STATIC_INLINE PetscErrorCode VecSetValue(Vec v,PetscInt i,PetscScalar va,InsertMode mode) {return VecSetValues(v,1,&i,&va,mode);} 3051d73ed98SBarry Smith 30630de9b25SBarry Smith 307014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecSetBlockSize(Vec,PetscInt); 308014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecGetBlockSize(Vec,PetscInt*); 309014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecSetValuesBlocked(Vec,PetscInt,const PetscInt[],const PetscScalar[],InsertMode); 3108ed539a5SBarry Smith 311fd487807SMatthew Knepley /* Dynamic creation and loading functions */ 312140e18c1SBarry Smith PETSC_EXTERN PetscFunctionList VecList; 313014dd563SJed Brown PETSC_EXTERN PetscBool VecRegisterAllCalled; 31419fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode VecSetType(Vec, VecType); 31519fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode VecGetType(Vec, VecType *); 316bdf89e91SBarry Smith PETSC_EXTERN PetscErrorCode VecRegister(const char[],PetscErrorCode (*)(Vec)); 317607a6623SBarry Smith PETSC_EXTERN PetscErrorCode VecRegisterAll(void); 31830de9b25SBarry Smith 319014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecScatterCreate(Vec,IS,Vec,IS,VecScatter *); 320014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecScatterCreateEmpty(MPI_Comm,VecScatter *); 321014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecScatterCreateLocal(VecScatter,PetscInt,const PetscInt[],const PetscInt[],const PetscInt[],PetscInt,const PetscInt[],const PetscInt[],const PetscInt[],PetscInt); 322014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecScatterBegin(VecScatter,Vec,Vec,InsertMode,ScatterMode); 323014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecScatterEnd(VecScatter,Vec,Vec,InsertMode,ScatterMode); 324014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecScatterDestroy(VecScatter*); 325014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecScatterCopy(VecScatter,VecScatter *); 326014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecScatterView(VecScatter,PetscViewer); 327014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecScatterRemap(VecScatter,PetscInt *,PetscInt*); 328014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecScatterGetMerged(VecScatter,PetscBool *); 3292195c698SBarry Smith 330014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecGetArray4d(Vec,PetscInt,PetscInt,PetscInt,PetscInt,PetscInt,PetscInt,PetscInt,PetscInt,PetscScalar****[]); 331014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecRestoreArray4d(Vec,PetscInt,PetscInt,PetscInt,PetscInt,PetscInt,PetscInt,PetscInt,PetscInt,PetscScalar****[]); 332014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecGetArray3d(Vec,PetscInt,PetscInt,PetscInt,PetscInt,PetscInt,PetscInt,PetscScalar***[]); 333014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecRestoreArray3d(Vec,PetscInt,PetscInt,PetscInt,PetscInt,PetscInt,PetscInt,PetscScalar***[]); 334014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecGetArray2d(Vec,PetscInt,PetscInt,PetscInt,PetscInt,PetscScalar**[]); 335014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecRestoreArray2d(Vec,PetscInt,PetscInt,PetscInt,PetscInt,PetscScalar**[]); 336014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecGetArray1d(Vec,PetscInt,PetscInt,PetscScalar *[]); 337014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecRestoreArray1d(Vec,PetscInt,PetscInt,PetscScalar *[]); 338ab360428SBarry Smith 339014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecPlaceArray(Vec,const PetscScalar[]); 340014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecResetArray(Vec); 341014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecReplaceArray(Vec,const PetscScalar[]); 342014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecGetArrays(const Vec[],PetscInt,PetscScalar**[]); 343014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecRestoreArrays(const Vec[],PetscInt,PetscScalar**[]); 34484cb2905SBarry Smith 345014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecView(Vec,PetscViewer); 346014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecEqual(Vec,Vec,PetscBool *); 347014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecLoad(Vec, PetscViewer); 3488ed539a5SBarry Smith 349014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecGetSize(Vec,PetscInt*); 350014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecGetLocalSize(Vec,PetscInt*); 351014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecGetOwnershipRange(Vec,PetscInt*,PetscInt*); 352014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecGetOwnershipRanges(Vec,const PetscInt *[]); 3538ed539a5SBarry Smith 354014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecSetLocalToGlobalMapping(Vec,ISLocalToGlobalMapping); 355014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecSetValuesLocal(Vec,PetscInt,const PetscInt[],const PetscScalar[],InsertMode); 35688b03592SBarry Smith 35788b03592SBarry Smith /*MC 35888b03592SBarry Smith VecSetValueLocal - Set a single entry into a vector using the local numbering 35988b03592SBarry Smith 36088b03592SBarry Smith Synopsis: 361f2ba6396SBarry Smith #include "petscvec.h" 3628122439eSJed Brown PetscErrorCode VecSetValueLocal(Vec v,PetscInt row,PetscScalar value, InsertMode mode); 36388b03592SBarry Smith 36488b03592SBarry Smith Not Collective 36588b03592SBarry Smith 36688b03592SBarry Smith Input Parameters: 36788b03592SBarry Smith + v - the vector 36888b03592SBarry Smith . row - the row location of the entry 36988b03592SBarry Smith . value - the value to insert 37088b03592SBarry Smith - mode - either INSERT_VALUES or ADD_VALUES 37188b03592SBarry Smith 37288b03592SBarry Smith Notes: 37388b03592SBarry Smith For efficiency one should use VecSetValues() and set several or 37488b03592SBarry Smith many values simultaneously if possible. 37588b03592SBarry Smith 37688b03592SBarry Smith These values may be cached, so VecAssemblyBegin() and VecAssemblyEnd() 37788b03592SBarry Smith MUST be called after all calls to VecSetValues() have been completed. 37888b03592SBarry Smith 37988b03592SBarry Smith VecSetValues() uses 0-based indices in Fortran as well as in C. 38088b03592SBarry Smith 38188b03592SBarry Smith Level: beginner 38288b03592SBarry Smith 38388b03592SBarry Smith .seealso: VecSetValues(), VecAssemblyBegin(), VecAssemblyEnd(), VecSetValuesBlockedLocal(), VecSetValue() 38488b03592SBarry Smith M*/ 38588b03592SBarry Smith PETSC_STATIC_INLINE PetscErrorCode VecSetValueLocal(Vec v,PetscInt i,PetscScalar va,InsertMode mode) {return VecSetValuesLocal(v,1,&i,&va,mode);} 38688b03592SBarry Smith 387014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecSetLocalToGlobalMappingBlock(Vec,ISLocalToGlobalMapping); 388014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecSetValuesBlockedLocal(Vec,PetscInt,const PetscInt[],const PetscScalar[],InsertMode); 389014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecGetLocalToGlobalMappingBlock(Vec,ISLocalToGlobalMapping*); 390014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecGetLocalToGlobalMapping(Vec,ISLocalToGlobalMapping*); 39190f02eecSBarry Smith 392014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecDotBegin(Vec,Vec,PetscScalar *); 393014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecDotEnd(Vec,Vec,PetscScalar *); 394014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecTDotBegin(Vec,Vec,PetscScalar *); 395014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecTDotEnd(Vec,Vec,PetscScalar *); 396014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecNormBegin(Vec,NormType,PetscReal *); 397014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecNormEnd(Vec,NormType,PetscReal *); 398d3c178dbSBarry Smith 399014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecMDotBegin(Vec,PetscInt,const Vec[],PetscScalar[]); 400014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecMDotEnd(Vec,PetscInt,const Vec[],PetscScalar[]); 401014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecMTDotBegin(Vec,PetscInt,const Vec[],PetscScalar[]); 402014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecMTDotEnd(Vec,PetscInt,const Vec[],PetscScalar[]); 403014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscCommSplitReductionBegin(MPI_Comm); 404a751f32aSSatish Balay 405a751f32aSSatish Balay 406*bda0d2a0SJed Brown typedef enum {VEC_IGNORE_OFF_PROC_ENTRIES,VEC_IGNORE_NEGATIVE_INDICES,VEC_SUBSET_OFF_PROC_ENTRIES} VecOption; 407014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecSetOption(Vec,VecOption,PetscBool ); 40890f02eecSBarry Smith 4095c0c2446SJed Brown PETSC_EXTERN PetscErrorCode VecGetArray(Vec,PetscScalar**); 4105c0c2446SJed Brown PETSC_EXTERN PetscErrorCode VecGetArrayRead(Vec,const PetscScalar**); 4115c0c2446SJed Brown PETSC_EXTERN PetscErrorCode VecRestoreArray(Vec,PetscScalar**); 4125c0c2446SJed Brown PETSC_EXTERN PetscErrorCode VecRestoreArrayRead(Vec,const PetscScalar**); 413e1fa1e0fSSatish Balay 41462796dfbSBarry Smith PETSC_EXTERN PetscErrorCode VecValidValues(Vec,PetscInt,PetscBool); 415f7ecc322SBarry Smith 416014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecContourScale(Vec,PetscReal,PetscReal); 417522c5e43SBarry Smith 41815091d37SBarry Smith /* 41915091d37SBarry Smith These numbers need to match the entries in 4203c94ec11SBarry Smith the function table in vecimpl.h 42115091d37SBarry Smith */ 4222dcb2ebcSBarry Smith typedef enum { VECOP_VIEW = 33, VECOP_LOAD = 41, VECOP_DUPLICATE = 0} VecOperation; 423014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecSetOperation(Vec,VecOperation,void(*)(void)); 424b19c1e4cSBarry Smith 425e182c471SBarry Smith /* 426e182c471SBarry Smith Routines for dealing with ghosted vectors: 427e182c471SBarry Smith vectors with ghost elements at the end of the array. 428e182c471SBarry Smith */ 429014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecMPISetGhost(Vec,PetscInt,const PetscInt[]); 430014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecCreateGhost(MPI_Comm,PetscInt,PetscInt,PetscInt,const PetscInt[],Vec*); 431014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecCreateGhostWithArray(MPI_Comm,PetscInt,PetscInt,PetscInt,const PetscInt[],const PetscScalar[],Vec*); 432014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecCreateGhostBlock(MPI_Comm,PetscInt,PetscInt,PetscInt,PetscInt,const PetscInt[],Vec*); 433014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecCreateGhostBlockWithArray(MPI_Comm,PetscInt,PetscInt,PetscInt,PetscInt,const PetscInt[],const PetscScalar[],Vec*); 434014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecGhostGetLocalForm(Vec,Vec*); 435014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecGhostRestoreLocalForm(Vec,Vec*); 4363efe6655SBarry Smith PETSC_EXTERN PetscErrorCode VecGhostIsLocalForm(Vec,Vec,PetscBool*); 437014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecGhostUpdateBegin(Vec,InsertMode,ScatterMode); 438014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecGhostUpdateEnd(Vec,InsertMode,ScatterMode); 439e182c471SBarry Smith 440014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecConjugate(Vec); 44134233285SBarry Smith 442014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecScatterCreateToAll(Vec,VecScatter*,Vec*); 443014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecScatterCreateToZero(Vec,VecScatter*,Vec*); 444bba1ac68SSatish Balay 445014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscViewerMathematicaGetVector(PetscViewer, Vec); 446014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscViewerMathematicaPutVector(PetscViewer, Vec); 4477dbadf16SMatthew Knepley 448d59c15a7SBarry Smith /*S 449d59c15a7SBarry Smith Vecs - Collection of vectors where the data for the vectors is stored in 450759e7b9cSHong Zhang one contiguous memory 451d59c15a7SBarry Smith 452d59c15a7SBarry Smith Level: advanced 453d59c15a7SBarry Smith 454d59c15a7SBarry Smith Notes: 455d59c15a7SBarry Smith Temporary construct for handling multiply right hand side solves 456d59c15a7SBarry Smith 457d59c15a7SBarry Smith This is faked by storing a single vector that has enough array space for 458d59c15a7SBarry Smith n vectors 459d59c15a7SBarry Smith 460d59c15a7SBarry Smith Concepts: parallel decomposition 461d59c15a7SBarry Smith 462d59c15a7SBarry Smith S*/ 46395fbd943SSatish Balay struct _n_Vecs {PetscInt n; Vec v;}; 46495fbd943SSatish Balay typedef struct _n_Vecs* Vecs; 465e1317eeeSBarry Smith PETSC_EXTERN PetscErrorCode VecsDestroy(Vecs); 466e1317eeeSBarry Smith PETSC_EXTERN PetscErrorCode VecsCreateSeq(MPI_Comm,PetscInt,PetscInt,Vecs*); 467e1317eeeSBarry Smith PETSC_EXTERN PetscErrorCode VecsCreateSeqWithArray(MPI_Comm,PetscInt,PetscInt,PetscScalar*,Vecs*); 468e1317eeeSBarry Smith PETSC_EXTERN PetscErrorCode VecsDuplicate(Vecs,Vecs*); 469e9fa29b7SSatish Balay 4708154be41SBarry Smith #if defined(PETSC_HAVE_CUSP) 471a5891931SBarry Smith typedef struct _p_PetscCUSPIndices* PetscCUSPIndices; 47225ec7418SKarl Rupp typedef struct _p_VecScatterCUSPIndices_StoS* VecScatterCUSPIndices_StoS; 47325ec7418SKarl Rupp typedef struct _p_VecScatterCUSPIndices_PtoP* VecScatterCUSPIndices_PtoP; 474014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecCUSPCopyToGPUSome_Public(Vec,PetscCUSPIndices); 475014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecCUSPCopyFromGPUSome_Public(Vec,PetscCUSPIndices); 476014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecScatterInitializeForGPU(VecScatter,Vec,ScatterMode); 477014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecScatterFinalizeForGPU(VecScatter); 478014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecCreateSeqCUSP(MPI_Comm,PetscInt,Vec*); 479014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecCreateMPICUSP(MPI_Comm,PetscInt,PetscInt,Vec*); 480a5891931SBarry Smith #endif 481e9fa29b7SSatish Balay 482b17c682bSKarl Rupp #if defined(PETSC_HAVE_VIENNACL) 483b17c682bSKarl Rupp typedef struct _p_PetscViennaCLIndices* PetscViennaCLIndices; 484b17c682bSKarl Rupp PETSC_EXTERN PetscErrorCode PetscViennaCLIndicesCreate(PetscInt, PetscInt*,PetscInt, PetscInt*,PetscViennaCLIndices*); 485b17c682bSKarl Rupp PETSC_EXTERN PetscErrorCode PetscViennaCLIndicesDestroy(PetscViennaCLIndices*); 486b17c682bSKarl Rupp PETSC_EXTERN PetscErrorCode VecViennaCLCopyToGPUSome_Public(Vec,PetscViennaCLIndices); 487b17c682bSKarl Rupp PETSC_EXTERN PetscErrorCode VecViennaCLCopyFromGPUSome_Public(Vec,PetscViennaCLIndices); 488b17c682bSKarl Rupp PETSC_EXTERN PetscErrorCode VecCreateSeqViennaCL(MPI_Comm,PetscInt,Vec*); 489b17c682bSKarl Rupp PETSC_EXTERN PetscErrorCode VecCreateMPIViennaCL(MPI_Comm,PetscInt,PetscInt,Vec*); 490b17c682bSKarl Rupp #endif 491b17c682bSKarl Rupp 492014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecNestGetSubVecs(Vec,PetscInt*,Vec**); 493014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecNestGetSubVec(Vec,PetscInt,Vec*); 494014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecNestSetSubVecs(Vec,PetscInt,PetscInt*,Vec*); 495014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecNestSetSubVec(Vec,PetscInt,Vec); 496014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecCreateNest(MPI_Comm,PetscInt,IS*,Vec*,Vec*); 497014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecNestGetSize(Vec,PetscInt*); 49845b63f25SDmitry Karpeev 499ab352700SBarry Smith PETSC_EXTERN PetscErrorCode PetscOptionsVec(const char[],const char[],const char[],Vec,PetscBool*); 5004325cce7SMatthew G Knepley PETSC_EXTERN PetscErrorCode VecChop(Vec,PetscReal); 501ab352700SBarry Smith 502077aedafSJed Brown PETSC_EXTERN PetscErrorCode VecGetLayout(Vec,PetscLayout*); 503077aedafSJed Brown PETSC_EXTERN PetscErrorCode VecSetLayout(Vec,PetscLayout); 5049a6d0b0bSJed Brown 5059a6d0b0bSJed Brown PETSC_EXTERN PetscErrorCode PetscSectionVecView(PetscSection, Vec, PetscViewer); 5069a6d0b0bSJed Brown PETSC_EXTERN PetscErrorCode VecGetValuesSection(Vec, PetscSection, PetscInt, PetscScalar **); 5079a6d0b0bSJed Brown PETSC_EXTERN PetscErrorCode VecSetValuesSection(Vec, PetscSection, PetscInt, PetscScalar [], InsertMode); 5089a6d0b0bSJed Brown 5092eac72dbSBarry Smith #endif 5102b82984cSSatish Balay 511