1 /* 2 Defines the vector component of PETSc. Vectors generally represent 3 degrees of freedom for finite element/finite difference functions 4 on a grid. They have more mathematical structure then simple arrays. 5 */ 6 7 #ifndef __PETSCVEC_H 8 #define __PETSCVEC_H 9 #include <petscis.h> 10 #include <petscviewer.h> 11 12 /*S 13 Vec - Abstract PETSc vector object 14 15 Level: beginner 16 17 Concepts: field variables, unknowns, arrays 18 19 .seealso: VecCreate(), VecType, VecSetType() 20 S*/ 21 typedef struct _p_Vec* Vec; 22 23 /*S 24 VecScatter - Object used to manage communication of data 25 between vectors in parallel. Manages both scatters and gathers 26 27 Level: beginner 28 29 Concepts: scatter 30 31 .seealso: VecScatterCreateWithData(), VecScatterBegin(), VecScatterEnd() 32 S*/ 33 typedef struct _p_VecScatter* VecScatter; 34 35 /*E 36 ScatterMode - Determines the direction of a scatter 37 38 Level: beginner 39 40 .seealso: VecScatter, VecScatterBegin(), VecScatterEnd() 41 E*/ 42 typedef enum {SCATTER_FORWARD=0, SCATTER_REVERSE=1, SCATTER_FORWARD_LOCAL=2, SCATTER_REVERSE_LOCAL=3, SCATTER_LOCAL=2} ScatterMode; 43 44 /*MC 45 SCATTER_FORWARD - Scatters the values as dictated by the VecScatterCreateWithData() call 46 47 Level: beginner 48 49 .seealso: VecScatter, ScatterMode, VecScatterCreateWithData(), VecScatterBegin(), VecScatterEnd(), SCATTER_REVERSE, SCATTER_FORWARD_LOCAL, 50 SCATTER_REVERSE_LOCAL 51 52 M*/ 53 54 /*MC 55 SCATTER_REVERSE - Moves the values in the opposite direction then the directions indicated in 56 in the VecScatterCreateWithData() 57 58 Level: beginner 59 60 .seealso: VecScatter, ScatterMode, VecScatterCreateWithData(), VecScatterBegin(), VecScatterEnd(), SCATTER_FORWARD, SCATTER_FORWARD_LOCAL, 61 SCATTER_REVERSE_LOCAL 62 63 M*/ 64 65 /*MC 66 SCATTER_FORWARD_LOCAL - Scatters the values as dictated by the VecScatterCreateWithData() call except NO parallel communication 67 is done. Any variables that have be moved between processes are ignored 68 69 Level: developer 70 71 .seealso: VecScatter, ScatterMode, VecScatterCreateWithData(), VecScatterBegin(), VecScatterEnd(), SCATTER_REVERSE, SCATTER_FORWARD, 72 SCATTER_REVERSE_LOCAL 73 74 M*/ 75 76 /*MC 77 SCATTER_REVERSE_LOCAL - Moves the values in the opposite direction then the directions indicated in 78 in the VecScatterCreateWithData() except NO parallel communication 79 is done. Any variables that have be moved between processes are ignored 80 81 Level: developer 82 83 .seealso: VecScatter, ScatterMode, VecScatterCreateWithData(), VecScatterBegin(), VecScatterEnd(), SCATTER_FORWARD, SCATTER_FORWARD_LOCAL, 84 SCATTER_REVERSE 85 86 M*/ 87 88 /*J 89 VecType - String with the name of a PETSc vector 90 91 Level: beginner 92 93 .seealso: VecSetType(), Vec, VecCreate(), VecDestroy() 94 J*/ 95 typedef const char* VecType; 96 #define VECSEQ "seq" 97 #define VECMPI "mpi" 98 #define VECSTANDARD "standard" /* seq on one process and mpi on several */ 99 #define VECSHARED "shared" 100 #define VECSEQVIENNACL "seqviennacl" 101 #define VECMPIVIENNACL "mpiviennacl" 102 #define VECVIENNACL "viennacl" /* seqviennacl on one process and mpiviennacl on several */ 103 #define VECSEQCUDA "seqcuda" 104 #define VECMPICUDA "mpicuda" 105 #define VECCUDA "cuda" /* seqcuda on one process and mpicuda on several */ 106 #define VECNEST "nest" 107 #define VECNODE "node" /* use on-node shared memory */ 108 109 /*J 110 VecScatterType - String with the name of a PETSc vector scatter type 111 112 Level: beginner 113 114 .seealso: VecScatterSetType(), VecScatter, VecScatterCreateWithData(), VecScatterDestroy() 115 J*/ 116 typedef const char* VecScatterType; 117 #define VECSCATTERSEQ "seq" 118 #define VECSCATTERMPI1 "mpi1" 119 #define VECSCATTERMPI3 "mpi3" /* use MPI3 on-node shared memory */ 120 #define VECSCATTERMPI3NODE "mpi3node" /* use MPI3 on-node shared memory for vector type VECNODE */ 121 122 /* Dynamic creation and loading functions */ 123 PETSC_EXTERN PetscFunctionList VecScatterList; 124 PETSC_EXTERN PetscErrorCode VecScatterSetType(VecScatter, VecScatterType); 125 PETSC_EXTERN PetscErrorCode VecScatterGetType(VecScatter, VecScatterType *); 126 PETSC_EXTERN PetscErrorCode VecScatterSetFromOptions(VecScatter); 127 PETSC_EXTERN PetscErrorCode VecScatterRegister(const char[],PetscErrorCode (*)(VecScatter)); 128 PETSC_EXTERN PetscErrorCode VecScatterCreateWithData(Vec,IS,Vec,IS,VecScatter*); 129 PETSC_EXTERN PetscErrorCode VecScatterInitializePackage(void); 130 PETSC_EXTERN PetscErrorCode VecScatterFinalizePackage(void); 131 132 /* Logging support */ 133 #define REAL_FILE_CLASSID 1211213 134 #define VEC_FILE_CLASSID 1211214 135 PETSC_EXTERN PetscClassId VEC_CLASSID; 136 PETSC_EXTERN PetscClassId VEC_SCATTER_CLASSID; 137 138 139 PETSC_EXTERN PetscErrorCode VecInitializePackage(void); 140 PETSC_EXTERN PetscErrorCode VecFinalizePackage(void); 141 142 PETSC_EXTERN PetscErrorCode VecCreate(MPI_Comm,Vec*); 143 PETSC_EXTERN PetscErrorCode VecCreateSeq(MPI_Comm,PetscInt,Vec*); 144 PETSC_EXTERN PetscErrorCode VecCreateMPI(MPI_Comm,PetscInt,PetscInt,Vec*); 145 PETSC_EXTERN PetscErrorCode VecCreateSeqWithArray(MPI_Comm,PetscInt,PetscInt,const PetscScalar[],Vec*); 146 PETSC_EXTERN PetscErrorCode VecCreateMPIWithArray(MPI_Comm,PetscInt,PetscInt,PetscInt,const PetscScalar[],Vec*); 147 PETSC_EXTERN PetscErrorCode VecCreateShared(MPI_Comm,PetscInt,PetscInt,Vec*); 148 PETSC_EXTERN PetscErrorCode VecCreateNode(MPI_Comm,PetscInt,PetscInt,Vec*); 149 150 PETSC_EXTERN PetscErrorCode VecSetFromOptions(Vec); 151 PETSC_STATIC_INLINE PetscErrorCode VecViewFromOptions(Vec A,PetscObject B,const char name[]) {return PetscObjectViewFromOptions((PetscObject)A,B,name);} 152 153 PETSC_EXTERN PetscErrorCode VecSetUp(Vec); 154 PETSC_EXTERN PetscErrorCode VecDestroy(Vec*); 155 PETSC_EXTERN PetscErrorCode VecZeroEntries(Vec); 156 PETSC_EXTERN PetscErrorCode VecSetOptionsPrefix(Vec,const char[]); 157 PETSC_EXTERN PetscErrorCode VecAppendOptionsPrefix(Vec,const char[]); 158 PETSC_EXTERN PetscErrorCode VecGetOptionsPrefix(Vec,const char*[]); 159 160 PETSC_EXTERN PetscErrorCode VecSetSizes(Vec,PetscInt,PetscInt); 161 162 PETSC_EXTERN PetscErrorCode VecDotNorm2(Vec,Vec,PetscScalar*,PetscReal*); 163 PETSC_EXTERN PetscErrorCode VecDot(Vec,Vec,PetscScalar*); 164 PETSC_EXTERN PetscErrorCode VecDotRealPart(Vec,Vec,PetscReal*); 165 PETSC_EXTERN PetscErrorCode VecTDot(Vec,Vec,PetscScalar*); 166 PETSC_EXTERN PetscErrorCode VecMDot(Vec,PetscInt,const Vec[],PetscScalar[]); 167 PETSC_EXTERN PetscErrorCode VecMTDot(Vec,PetscInt,const Vec[],PetscScalar[]); 168 PETSC_EXTERN PetscErrorCode VecGetSubVector(Vec,IS,Vec*); 169 PETSC_EXTERN PetscErrorCode VecRestoreSubVector(Vec,IS,Vec*); 170 171 /*E 172 NormType - determines what type of norm to compute 173 174 Level: beginner 175 176 .seealso: VecNorm(), VecNormBegin(), VecNormEnd(), MatNorm() 177 E*/ 178 typedef enum {NORM_1=0,NORM_2=1,NORM_FROBENIUS=2,NORM_INFINITY=3,NORM_1_AND_2=4} NormType; 179 PETSC_EXTERN const char *const NormTypes[]; 180 #define NORM_MAX NORM_INFINITY 181 182 /*MC 183 NORM_1 - the one norm, ||v|| = sum_i | v_i |. ||A|| = max_j || v_*j ||, maximum column sum 184 185 Level: beginner 186 187 .seealso: NormType, MatNorm(), VecNorm(), VecNormBegin(), VecNormEnd(), NORM_2, NORM_FROBENIUS, 188 NORM_INFINITY, NORM_1_AND_2 189 190 M*/ 191 192 /*MC 193 NORM_2 - the two norm, ||v|| = sqrt(sum_i |v_i|^2) (vectors only) 194 195 Level: beginner 196 197 .seealso: NormType, MatNorm(), VecNorm(), VecNormBegin(), VecNormEnd(), NORM_1, NORM_FROBENIUS, 198 NORM_INFINITY, NORM_1_AND_2 199 200 M*/ 201 202 /*MC 203 NORM_FROBENIUS - ||A|| = sqrt(sum_ij |A_ij|^2), same as NORM_2 for vectors 204 205 Level: beginner 206 207 .seealso: NormType, MatNorm(), VecNorm(), VecNormBegin(), VecNormEnd(), NORM_1, NORM_2, 208 NORM_INFINITY, NORM_1_AND_2 209 210 M*/ 211 212 /*MC 213 NORM_INFINITY - ||v|| = max_i |v_i|. ||A|| = max_i || v_i* ||, maximum row sum 214 215 Level: beginner 216 217 .seealso: NormType, MatNorm(), VecNorm(), VecNormBegin(), VecNormEnd(), NORM_1, NORM_2, 218 NORM_FROBINIUS, NORM_1_AND_2 219 220 M*/ 221 222 /*MC 223 NORM_1_AND_2 - computes both the 1 and 2 norm of a vector 224 225 Level: beginner 226 227 .seealso: NormType, MatNorm(), VecNorm(), VecNormBegin(), VecNormEnd(), NORM_1, NORM_2, 228 NORM_FROBINIUS, NORM_INFINITY 229 230 M*/ 231 232 /*MC 233 NORM_MAX - see NORM_INFINITY 234 235 Level: beginner 236 237 M*/ 238 239 PETSC_EXTERN PetscErrorCode VecNorm(Vec,NormType,PetscReal *); 240 PETSC_EXTERN PetscErrorCode VecNormAvailable(Vec,NormType,PetscBool *,PetscReal *); 241 PETSC_EXTERN PetscErrorCode VecNormalize(Vec,PetscReal *); 242 PETSC_EXTERN PetscErrorCode VecSum(Vec,PetscScalar*); 243 PETSC_EXTERN PetscErrorCode VecMax(Vec,PetscInt*,PetscReal *); 244 PETSC_EXTERN PetscErrorCode VecMin(Vec,PetscInt*,PetscReal *); 245 PETSC_EXTERN PetscErrorCode VecScale(Vec,PetscScalar); 246 PETSC_EXTERN PetscErrorCode VecCopy(Vec,Vec); 247 PETSC_EXTERN PetscErrorCode VecSetRandom(Vec,PetscRandom); 248 PETSC_EXTERN PetscErrorCode VecSet(Vec,PetscScalar); 249 PETSC_EXTERN PetscErrorCode VecSetInf(Vec); 250 PETSC_EXTERN PetscErrorCode VecSwap(Vec,Vec); 251 PETSC_EXTERN PetscErrorCode VecAXPY(Vec,PetscScalar,Vec); 252 PETSC_EXTERN PetscErrorCode VecAXPBY(Vec,PetscScalar,PetscScalar,Vec); 253 PETSC_EXTERN PetscErrorCode VecMAXPY(Vec,PetscInt,const PetscScalar[],Vec[]); 254 PETSC_EXTERN PetscErrorCode VecAYPX(Vec,PetscScalar,Vec); 255 PETSC_EXTERN PetscErrorCode VecWAXPY(Vec,PetscScalar,Vec,Vec); 256 PETSC_EXTERN PetscErrorCode VecAXPBYPCZ(Vec,PetscScalar,PetscScalar,PetscScalar,Vec,Vec); 257 PETSC_EXTERN PetscErrorCode VecPointwiseMax(Vec,Vec,Vec); 258 PETSC_EXTERN PetscErrorCode VecPointwiseMaxAbs(Vec,Vec,Vec); 259 PETSC_EXTERN PetscErrorCode VecPointwiseMin(Vec,Vec,Vec); 260 PETSC_EXTERN PetscErrorCode VecPointwiseMult(Vec,Vec,Vec); 261 PETSC_EXTERN PetscErrorCode VecPointwiseDivide(Vec,Vec,Vec); 262 PETSC_EXTERN PetscErrorCode VecMaxPointwiseDivide(Vec,Vec,PetscReal*); 263 PETSC_EXTERN PetscErrorCode VecShift(Vec,PetscScalar); 264 PETSC_EXTERN PetscErrorCode VecReciprocal(Vec); 265 PETSC_EXTERN PetscErrorCode VecPermute(Vec, IS, PetscBool ); 266 PETSC_EXTERN PetscErrorCode VecSqrtAbs(Vec); 267 PETSC_EXTERN PetscErrorCode VecLog(Vec); 268 PETSC_EXTERN PetscErrorCode VecExp(Vec); 269 PETSC_EXTERN PetscErrorCode VecAbs(Vec); 270 PETSC_EXTERN PetscErrorCode VecDuplicate(Vec,Vec*); 271 PETSC_EXTERN PetscErrorCode VecDuplicateVecs(Vec,PetscInt,Vec*[]); 272 PETSC_EXTERN PetscErrorCode VecDestroyVecs(PetscInt, Vec*[]); 273 PETSC_EXTERN PetscErrorCode VecStrideNormAll(Vec,NormType,PetscReal[]); 274 PETSC_EXTERN PetscErrorCode VecStrideMaxAll(Vec,PetscInt [],PetscReal []); 275 PETSC_EXTERN PetscErrorCode VecStrideMinAll(Vec,PetscInt [],PetscReal []); 276 PETSC_EXTERN PetscErrorCode VecStrideScaleAll(Vec,const PetscScalar[]); 277 PETSC_EXTERN PetscErrorCode VecUniqueEntries(Vec,PetscInt*,PetscScalar**); 278 279 PETSC_EXTERN PetscErrorCode VecStrideNorm(Vec,PetscInt,NormType,PetscReal*); 280 PETSC_EXTERN PetscErrorCode VecStrideMax(Vec,PetscInt,PetscInt *,PetscReal *); 281 PETSC_EXTERN PetscErrorCode VecStrideMin(Vec,PetscInt,PetscInt *,PetscReal *); 282 PETSC_EXTERN PetscErrorCode VecStrideScale(Vec,PetscInt,PetscScalar); 283 PETSC_EXTERN PetscErrorCode VecStrideSet(Vec,PetscInt,PetscScalar); 284 285 286 PETSC_EXTERN PetscErrorCode VecStrideGather(Vec,PetscInt,Vec,InsertMode); 287 PETSC_EXTERN PetscErrorCode VecStrideScatter(Vec,PetscInt,Vec,InsertMode); 288 PETSC_EXTERN PetscErrorCode VecStrideGatherAll(Vec,Vec[],InsertMode); 289 PETSC_EXTERN PetscErrorCode VecStrideScatterAll(Vec[],Vec,InsertMode); 290 291 PETSC_EXTERN PetscErrorCode VecStrideSubSetScatter(Vec,PetscInt,const PetscInt[],const PetscInt[],Vec,InsertMode); 292 PETSC_EXTERN PetscErrorCode VecStrideSubSetGather(Vec,PetscInt,const PetscInt[],const PetscInt[],Vec,InsertMode); 293 294 PETSC_EXTERN PetscErrorCode VecSetValues(Vec,PetscInt,const PetscInt[],const PetscScalar[],InsertMode); 295 PETSC_EXTERN PetscErrorCode VecGetValues(Vec,PetscInt,const PetscInt[],PetscScalar[]); 296 PETSC_EXTERN PetscErrorCode VecAssemblyBegin(Vec); 297 PETSC_EXTERN PetscErrorCode VecAssemblyEnd(Vec); 298 PETSC_EXTERN PetscErrorCode VecStashSetInitialSize(Vec,PetscInt,PetscInt); 299 PETSC_EXTERN PetscErrorCode VecStashView(Vec,PetscViewer); 300 PETSC_EXTERN PetscErrorCode VecStashViewFromOptions(Vec,PetscObject,const char[]); 301 PETSC_EXTERN PetscErrorCode VecStashGetInfo(Vec,PetscInt*,PetscInt*,PetscInt*,PetscInt*); 302 303 /*MC 304 VecSetValue - Set a single entry into a vector. 305 306 Synopsis: 307 #include <petscvec.h> 308 PetscErrorCode VecSetValue(Vec v,PetscInt row,PetscScalar value, InsertMode mode); 309 310 Not Collective 311 312 Input Parameters: 313 + v - the vector 314 . row - the row location of the entry 315 . value - the value to insert 316 - mode - either INSERT_VALUES or ADD_VALUES 317 318 Notes: 319 For efficiency one should use VecSetValues() and set several or 320 many values simultaneously if possible. 321 322 These values may be cached, so VecAssemblyBegin() and VecAssemblyEnd() 323 MUST be called after all calls to VecSetValue() have been completed. 324 325 VecSetValue() uses 0-based indices in Fortran as well as in C. 326 327 Level: beginner 328 329 .seealso: VecSetValues(), VecAssemblyBegin(), VecAssemblyEnd(), VecSetValuesBlockedLocal(), VecSetValueLocal() 330 M*/ 331 PETSC_STATIC_INLINE PetscErrorCode VecSetValue(Vec v,PetscInt i,PetscScalar va,InsertMode mode) {return VecSetValues(v,1,&i,&va,mode);} 332 333 334 PETSC_EXTERN PetscErrorCode VecSetBlockSize(Vec,PetscInt); 335 PETSC_EXTERN PetscErrorCode VecGetBlockSize(Vec,PetscInt*); 336 PETSC_EXTERN PetscErrorCode VecSetValuesBlocked(Vec,PetscInt,const PetscInt[],const PetscScalar[],InsertMode); 337 338 /* Dynamic creation and loading functions */ 339 PETSC_EXTERN PetscFunctionList VecList; 340 PETSC_EXTERN PetscErrorCode VecSetType(Vec, VecType); 341 PETSC_EXTERN PetscErrorCode VecGetType(Vec, VecType *); 342 PETSC_EXTERN PetscErrorCode VecRegister(const char[],PetscErrorCode (*)(Vec)); 343 344 PETSC_EXTERN PetscErrorCode VecScatterCreateWithData(Vec,IS,Vec,IS,VecScatter *); 345 PETSC_EXTERN PetscErrorCode VecScatterSetData(VecScatter,Vec,IS,Vec,IS); 346 PETSC_EXTERN PetscErrorCode VecScatterCreate(MPI_Comm,VecScatter *); 347 PETSC_EXTERN PetscErrorCode VecScatterBegin(VecScatter,Vec,Vec,InsertMode,ScatterMode); 348 PETSC_EXTERN PetscErrorCode VecScatterEnd(VecScatter,Vec,Vec,InsertMode,ScatterMode); 349 PETSC_EXTERN PetscErrorCode VecScatterDestroy(VecScatter*); 350 PETSC_EXTERN PetscErrorCode VecScatterSetUp(VecScatter); 351 PETSC_EXTERN PetscErrorCode VecScatterCopy(VecScatter,VecScatter *); 352 PETSC_EXTERN PetscErrorCode VecScatterView(VecScatter,PetscViewer); 353 PETSC_STATIC_INLINE PetscErrorCode VecScatterViewFromOptions(VecScatter A,PetscObject obj,const char name[]) {return PetscObjectViewFromOptions((PetscObject)A,obj,name);} 354 PETSC_EXTERN PetscErrorCode VecScatterRemap(VecScatter,PetscInt *,PetscInt*); 355 PETSC_EXTERN PetscErrorCode VecScatterGetMerged(VecScatter,PetscBool *); 356 357 PETSC_EXTERN PetscErrorCode VecGetArray4d(Vec,PetscInt,PetscInt,PetscInt,PetscInt,PetscInt,PetscInt,PetscInt,PetscInt,PetscScalar****[]); 358 PETSC_EXTERN PetscErrorCode VecRestoreArray4d(Vec,PetscInt,PetscInt,PetscInt,PetscInt,PetscInt,PetscInt,PetscInt,PetscInt,PetscScalar****[]); 359 PETSC_EXTERN PetscErrorCode VecGetArray3d(Vec,PetscInt,PetscInt,PetscInt,PetscInt,PetscInt,PetscInt,PetscScalar***[]); 360 PETSC_EXTERN PetscErrorCode VecRestoreArray3d(Vec,PetscInt,PetscInt,PetscInt,PetscInt,PetscInt,PetscInt,PetscScalar***[]); 361 PETSC_EXTERN PetscErrorCode VecGetArray2d(Vec,PetscInt,PetscInt,PetscInt,PetscInt,PetscScalar**[]); 362 PETSC_EXTERN PetscErrorCode VecRestoreArray2d(Vec,PetscInt,PetscInt,PetscInt,PetscInt,PetscScalar**[]); 363 PETSC_EXTERN PetscErrorCode VecGetArray1d(Vec,PetscInt,PetscInt,PetscScalar *[]); 364 PETSC_EXTERN PetscErrorCode VecRestoreArray1d(Vec,PetscInt,PetscInt,PetscScalar *[]); 365 366 PETSC_EXTERN PetscErrorCode VecGetArray4dRead(Vec,PetscInt,PetscInt,PetscInt,PetscInt,PetscInt,PetscInt,PetscInt,PetscInt,PetscScalar****[]); 367 PETSC_EXTERN PetscErrorCode VecRestoreArray4dRead(Vec,PetscInt,PetscInt,PetscInt,PetscInt,PetscInt,PetscInt,PetscInt,PetscInt,PetscScalar****[]); 368 PETSC_EXTERN PetscErrorCode VecGetArray3dRead(Vec,PetscInt,PetscInt,PetscInt,PetscInt,PetscInt,PetscInt,PetscScalar***[]); 369 PETSC_EXTERN PetscErrorCode VecRestoreArray3dRead(Vec,PetscInt,PetscInt,PetscInt,PetscInt,PetscInt,PetscInt,PetscScalar***[]); 370 PETSC_EXTERN PetscErrorCode VecGetArray2dRead(Vec,PetscInt,PetscInt,PetscInt,PetscInt,PetscScalar**[]); 371 PETSC_EXTERN PetscErrorCode VecRestoreArray2dRead(Vec,PetscInt,PetscInt,PetscInt,PetscInt,PetscScalar**[]); 372 PETSC_EXTERN PetscErrorCode VecGetArray1dRead(Vec,PetscInt,PetscInt,PetscScalar *[]); 373 PETSC_EXTERN PetscErrorCode VecRestoreArray1dRead(Vec,PetscInt,PetscInt,PetscScalar *[]); 374 375 PETSC_EXTERN PetscErrorCode VecPlaceArray(Vec,const PetscScalar[]); 376 PETSC_EXTERN PetscErrorCode VecResetArray(Vec); 377 PETSC_EXTERN PetscErrorCode VecReplaceArray(Vec,const PetscScalar[]); 378 PETSC_EXTERN PetscErrorCode VecGetArrays(const Vec[],PetscInt,PetscScalar**[]); 379 PETSC_EXTERN PetscErrorCode VecRestoreArrays(const Vec[],PetscInt,PetscScalar**[]); 380 381 PETSC_EXTERN PetscErrorCode VecView(Vec,PetscViewer); 382 PETSC_EXTERN PetscErrorCode VecEqual(Vec,Vec,PetscBool *); 383 PETSC_EXTERN PetscErrorCode VecLoad(Vec, PetscViewer); 384 385 PETSC_EXTERN PetscErrorCode VecGetSize(Vec,PetscInt*); 386 PETSC_EXTERN PetscErrorCode VecGetLocalSize(Vec,PetscInt*); 387 PETSC_EXTERN PetscErrorCode VecGetOwnershipRange(Vec,PetscInt*,PetscInt*); 388 PETSC_EXTERN PetscErrorCode VecGetOwnershipRanges(Vec,const PetscInt *[]); 389 390 PETSC_EXTERN PetscErrorCode VecSetLocalToGlobalMapping(Vec,ISLocalToGlobalMapping); 391 PETSC_EXTERN PetscErrorCode VecSetValuesLocal(Vec,PetscInt,const PetscInt[],const PetscScalar[],InsertMode); 392 393 /*MC 394 VecSetValueLocal - Set a single entry into a vector using the local numbering 395 396 Synopsis: 397 #include <petscvec.h> 398 PetscErrorCode VecSetValueLocal(Vec v,PetscInt row,PetscScalar value, InsertMode mode); 399 400 Not Collective 401 402 Input Parameters: 403 + v - the vector 404 . row - the row location of the entry 405 . value - the value to insert 406 - mode - either INSERT_VALUES or ADD_VALUES 407 408 Notes: 409 For efficiency one should use VecSetValues() and set several or 410 many values simultaneously if possible. 411 412 These values may be cached, so VecAssemblyBegin() and VecAssemblyEnd() 413 MUST be called after all calls to VecSetValues() have been completed. 414 415 VecSetValues() uses 0-based indices in Fortran as well as in C. 416 417 Level: beginner 418 419 .seealso: VecSetValues(), VecAssemblyBegin(), VecAssemblyEnd(), VecSetValuesBlockedLocal(), VecSetValue() 420 M*/ 421 PETSC_STATIC_INLINE PetscErrorCode VecSetValueLocal(Vec v,PetscInt i,PetscScalar va,InsertMode mode) {return VecSetValuesLocal(v,1,&i,&va,mode);} 422 423 PETSC_EXTERN PetscErrorCode VecSetValuesBlockedLocal(Vec,PetscInt,const PetscInt[],const PetscScalar[],InsertMode); 424 PETSC_EXTERN PetscErrorCode VecGetLocalToGlobalMapping(Vec,ISLocalToGlobalMapping*); 425 426 PETSC_EXTERN PetscErrorCode VecDotBegin(Vec,Vec,PetscScalar *); 427 PETSC_EXTERN PetscErrorCode VecDotEnd(Vec,Vec,PetscScalar *); 428 PETSC_EXTERN PetscErrorCode VecTDotBegin(Vec,Vec,PetscScalar *); 429 PETSC_EXTERN PetscErrorCode VecTDotEnd(Vec,Vec,PetscScalar *); 430 PETSC_EXTERN PetscErrorCode VecNormBegin(Vec,NormType,PetscReal *); 431 PETSC_EXTERN PetscErrorCode VecNormEnd(Vec,NormType,PetscReal *); 432 433 PETSC_EXTERN PetscErrorCode VecMDotBegin(Vec,PetscInt,const Vec[],PetscScalar[]); 434 PETSC_EXTERN PetscErrorCode VecMDotEnd(Vec,PetscInt,const Vec[],PetscScalar[]); 435 PETSC_EXTERN PetscErrorCode VecMTDotBegin(Vec,PetscInt,const Vec[],PetscScalar[]); 436 PETSC_EXTERN PetscErrorCode VecMTDotEnd(Vec,PetscInt,const Vec[],PetscScalar[]); 437 PETSC_EXTERN PetscErrorCode PetscCommSplitReductionBegin(MPI_Comm); 438 439 440 typedef enum {VEC_IGNORE_OFF_PROC_ENTRIES,VEC_IGNORE_NEGATIVE_INDICES,VEC_SUBSET_OFF_PROC_ENTRIES} VecOption; 441 PETSC_EXTERN PetscErrorCode VecSetOption(Vec,VecOption,PetscBool ); 442 443 PETSC_EXTERN PetscErrorCode VecGetArray(Vec,PetscScalar**); 444 PETSC_EXTERN PetscErrorCode VecGetArrayRead(Vec,const PetscScalar**); 445 PETSC_EXTERN PetscErrorCode VecRestoreArray(Vec,PetscScalar**); 446 PETSC_EXTERN PetscErrorCode VecRestoreArrayRead(Vec,const PetscScalar**); 447 PETSC_EXTERN PetscErrorCode VecGetLocalVector(Vec,Vec); 448 PETSC_EXTERN PetscErrorCode VecRestoreLocalVector(Vec,Vec); 449 PETSC_EXTERN PetscErrorCode VecGetLocalVectorRead(Vec,Vec); 450 PETSC_EXTERN PetscErrorCode VecRestoreLocalVectorRead(Vec,Vec); 451 452 /*@C 453 VecGetArrayPair - Accesses a pair of pointers for two vectors that may be common. When not common the first is read only 454 455 Logically Collective on Vec 456 457 Input Parameters: 458 + x - the vector 459 - y - the second vector 460 461 Output Parameters: 462 + xv - location to put pointer to the first array 463 - yv - location to put pointer to the second array 464 465 Level: developer 466 467 Not available from Fortran 468 469 .seealso: VecGetArray(), VecGetArrayRead(), VecRestoreArrayPair() 470 471 @*/ 472 PETSC_STATIC_INLINE PetscErrorCode VecGetArrayPair(Vec x,Vec y,PetscScalar **xv,PetscScalar **yv) 473 { 474 PetscErrorCode ierr; 475 476 PetscFunctionBegin; 477 ierr = VecGetArray(y,yv);CHKERRQ(ierr); 478 if (x != y) { 479 ierr = VecGetArrayRead(x,(const PetscScalar **)xv);CHKERRQ(ierr); 480 } else { 481 *xv = *yv; 482 } 483 PetscFunctionReturn(0); 484 } 485 486 /*@C 487 VecRestoreArrayPair - Returns a pair of pointers for two vectors that may be common. When not common the first is read only 488 489 Logically Collective on Vec 490 491 Input Parameters: 492 + x - the vector 493 - y - the second vector 494 495 Output Parameters: 496 + xv - location to put pointer to the first array 497 - yv - location to put pointer to the second array 498 499 Level: developer 500 501 Not available from Fortran 502 503 .seealso: VecGetArray(), VecGetArrayRead(), VecGetArrayPair() 504 505 @*/ 506 PETSC_STATIC_INLINE PetscErrorCode VecRestoreArrayPair(Vec x,Vec y,PetscScalar **xv,PetscScalar **yv) 507 { 508 PetscErrorCode ierr; 509 510 PetscFunctionBegin; 511 ierr = VecRestoreArray(y,yv);CHKERRQ(ierr); 512 if (x != y) { 513 ierr = VecRestoreArrayRead(x,(const PetscScalar **)xv);CHKERRQ(ierr); 514 } 515 PetscFunctionReturn(0); 516 } 517 518 #if defined(PETSC_USE_DEBUG) 519 PETSC_EXTERN PetscErrorCode VecLockGet(Vec,PetscInt*); 520 PETSC_EXTERN PetscErrorCode VecLockPush(Vec); 521 PETSC_EXTERN PetscErrorCode VecLockPop(Vec); 522 #define VecLocked(x,arg) do {PetscInt _st; PetscErrorCode __ierr = VecLockGet(x,&_st); CHKERRQ(__ierr); if (_st > 0) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE," Vec is locked read only, argument # %d",arg);} while (0) 523 #else 524 #define VecLockGet(x,arg) *(arg) = 0 525 #define VecLockPush(x) 0 526 #define VecLockPop(x) 0 527 #define VecLocked(x,arg) 528 #endif 529 530 PETSC_EXTERN PetscErrorCode VecValidValues(Vec,PetscInt,PetscBool); 531 532 /* 533 These numbers need to match the entries in 534 the function table in vecimpl.h 535 */ 536 typedef enum { VECOP_DUPLICATE = 0, VECOP_VIEW = 33, VECOP_LOAD = 41, VECOP_VIEWNATIVE = 68, VECOP_LOADNATIVE = 69 } VecOperation; 537 PETSC_EXTERN PetscErrorCode VecSetOperation(Vec,VecOperation,void(*)(void)); 538 539 /* 540 Routines for dealing with ghosted vectors: 541 vectors with ghost elements at the end of the array. 542 */ 543 PETSC_EXTERN PetscErrorCode VecMPISetGhost(Vec,PetscInt,const PetscInt[]); 544 PETSC_EXTERN PetscErrorCode VecCreateGhost(MPI_Comm,PetscInt,PetscInt,PetscInt,const PetscInt[],Vec*); 545 PETSC_EXTERN PetscErrorCode VecCreateGhostWithArray(MPI_Comm,PetscInt,PetscInt,PetscInt,const PetscInt[],const PetscScalar[],Vec*); 546 PETSC_EXTERN PetscErrorCode VecCreateGhostBlock(MPI_Comm,PetscInt,PetscInt,PetscInt,PetscInt,const PetscInt[],Vec*); 547 PETSC_EXTERN PetscErrorCode VecCreateGhostBlockWithArray(MPI_Comm,PetscInt,PetscInt,PetscInt,PetscInt,const PetscInt[],const PetscScalar[],Vec*); 548 PETSC_EXTERN PetscErrorCode VecGhostGetLocalForm(Vec,Vec*); 549 PETSC_EXTERN PetscErrorCode VecGhostRestoreLocalForm(Vec,Vec*); 550 PETSC_EXTERN PetscErrorCode VecGhostIsLocalForm(Vec,Vec,PetscBool*); 551 PETSC_EXTERN PetscErrorCode VecGhostUpdateBegin(Vec,InsertMode,ScatterMode); 552 PETSC_EXTERN PetscErrorCode VecGhostUpdateEnd(Vec,InsertMode,ScatterMode); 553 554 PETSC_EXTERN PetscErrorCode VecConjugate(Vec); 555 556 PETSC_EXTERN PetscErrorCode VecScatterCreateToAll(Vec,VecScatter*,Vec*); 557 PETSC_EXTERN PetscErrorCode VecScatterCreateToZero(Vec,VecScatter*,Vec*); 558 559 PETSC_EXTERN PetscErrorCode ISComplementVec(IS,Vec,IS*); 560 PETSC_EXTERN PetscErrorCode VecPow(Vec, PetscScalar); 561 PETSC_EXTERN PetscErrorCode VecMedian(Vec, Vec, Vec, Vec); 562 PETSC_EXTERN PetscErrorCode VecWhichInactive(Vec, Vec, Vec, Vec, PetscBool, IS *); 563 PETSC_EXTERN PetscErrorCode VecWhichBetween(Vec, Vec, Vec, IS *); 564 PETSC_EXTERN PetscErrorCode VecWhichBetweenOrEqual(Vec, Vec, Vec, IS *); 565 PETSC_EXTERN PetscErrorCode VecWhichGreaterThan(Vec, Vec, IS * ); 566 PETSC_EXTERN PetscErrorCode VecWhichLessThan(Vec, Vec, IS *); 567 PETSC_EXTERN PetscErrorCode VecWhichEqual(Vec, Vec, IS *); 568 PETSC_EXTERN PetscErrorCode VecISAXPY(Vec, IS, PetscScalar,Vec); 569 PETSC_EXTERN PetscErrorCode VecISCopy(Vec, IS, ScatterMode, Vec); 570 PETSC_EXTERN PetscErrorCode VecISSet(Vec,IS, PetscScalar); 571 PETSC_EXTERN PetscErrorCode VecBoundGradientProjection(Vec, Vec, Vec, Vec, Vec); 572 PETSC_EXTERN PetscErrorCode VecStepBoundInfo(Vec,Vec,Vec,Vec,PetscReal*, PetscReal*,PetscReal*); 573 PETSC_EXTERN PetscErrorCode VecStepMax(Vec, Vec, PetscReal *); 574 PETSC_EXTERN PetscErrorCode VecStepMaxBounded(Vec,Vec,Vec,Vec,PetscReal*); 575 576 PETSC_EXTERN PetscErrorCode PetscViewerMathematicaGetVector(PetscViewer, Vec); 577 PETSC_EXTERN PetscErrorCode PetscViewerMathematicaPutVector(PetscViewer, Vec); 578 579 /*S 580 Vecs - Collection of vectors where the data for the vectors is stored in 581 one contiguous memory 582 583 Level: advanced 584 585 Notes: 586 Temporary construct for handling multiply right hand side solves 587 588 This is faked by storing a single vector that has enough array space for 589 n vectors 590 591 Concepts: parallel decomposition 592 593 S*/ 594 struct _n_Vecs {PetscInt n; Vec v;}; 595 typedef struct _n_Vecs* Vecs; 596 PETSC_EXTERN PetscErrorCode VecsDestroy(Vecs); 597 PETSC_EXTERN PetscErrorCode VecsCreateSeq(MPI_Comm,PetscInt,PetscInt,Vecs*); 598 PETSC_EXTERN PetscErrorCode VecsCreateSeqWithArray(MPI_Comm,PetscInt,PetscInt,PetscScalar*,Vecs*); 599 PETSC_EXTERN PetscErrorCode VecsDuplicate(Vecs,Vecs*); 600 601 #if defined(PETSC_HAVE_VIENNACL) 602 typedef struct _p_PetscViennaCLIndices* PetscViennaCLIndices; 603 PETSC_EXTERN PetscErrorCode PetscViennaCLIndicesCreate(PetscInt, PetscInt*,PetscInt, PetscInt*,PetscViennaCLIndices*); 604 PETSC_EXTERN PetscErrorCode PetscViennaCLIndicesDestroy(PetscViennaCLIndices*); 605 PETSC_EXTERN PetscErrorCode VecViennaCLCopyToGPUSome_Public(Vec,PetscViennaCLIndices); 606 PETSC_EXTERN PetscErrorCode VecViennaCLCopyFromGPUSome_Public(Vec,PetscViennaCLIndices); 607 PETSC_EXTERN PetscErrorCode VecCreateSeqViennaCL(MPI_Comm,PetscInt,Vec*); 608 PETSC_EXTERN PetscErrorCode VecCreateMPIViennaCL(MPI_Comm,PetscInt,PetscInt,Vec*); 609 #endif 610 #if defined(PETSC_HAVE_VECCUDA) 611 typedef struct _p_PetscCUDAIndices* PetscCUDAIndices; 612 typedef struct _p_VecScatterCUDAIndices_StoS* VecScatterCUDAIndices_StoS; 613 typedef struct _p_VecScatterCUDAIndices_PtoP* VecScatterCUDAIndices_PtoP; 614 PETSC_EXTERN PetscErrorCode VecCUDACopyToGPUSome_Public(Vec,PetscCUDAIndices); 615 PETSC_EXTERN PetscErrorCode VecCUDACopyFromGPUSome_Public(Vec,PetscCUDAIndices); 616 PETSC_EXTERN PetscErrorCode VecScatterInitializeForGPU(VecScatter,Vec,ScatterMode); 617 PETSC_EXTERN PetscErrorCode VecScatterFinalizeForGPU(VecScatter); 618 PETSC_EXTERN PetscErrorCode VecCreateSeqCUDA(MPI_Comm,PetscInt,Vec*); 619 PETSC_EXTERN PetscErrorCode VecCreateSeqCUDAWithArray(MPI_Comm,PetscInt,PetscInt,const PetscScalar*,Vec*); 620 PETSC_EXTERN PetscErrorCode VecCreateMPICUDA(MPI_Comm,PetscInt,PetscInt,Vec*); 621 PETSC_EXTERN PetscErrorCode VecCreateMPICUDAWithArray(MPI_Comm,PetscInt,PetscInt,PetscInt,const PetscScalar*,Vec*); 622 #endif 623 624 PETSC_EXTERN PetscErrorCode VecNestGetSubVecs(Vec,PetscInt*,Vec**); 625 PETSC_EXTERN PetscErrorCode VecNestGetSubVec(Vec,PetscInt,Vec*); 626 PETSC_EXTERN PetscErrorCode VecNestSetSubVecs(Vec,PetscInt,PetscInt*,Vec*); 627 PETSC_EXTERN PetscErrorCode VecNestSetSubVec(Vec,PetscInt,Vec); 628 PETSC_EXTERN PetscErrorCode VecCreateNest(MPI_Comm,PetscInt,IS*,Vec*,Vec*); 629 PETSC_EXTERN PetscErrorCode VecNestGetSize(Vec,PetscInt*); 630 631 PETSC_EXTERN PetscErrorCode PetscOptionsGetVec(PetscOptions,const char[],const char[],Vec,PetscBool*); 632 PETSC_EXTERN PetscErrorCode VecChop(Vec,PetscReal); 633 634 PETSC_EXTERN PetscErrorCode VecGetLayout(Vec,PetscLayout*); 635 PETSC_EXTERN PetscErrorCode VecSetLayout(Vec,PetscLayout); 636 637 PETSC_EXTERN PetscErrorCode PetscSectionVecView(PetscSection, Vec, PetscViewer); 638 PETSC_EXTERN PetscErrorCode VecGetValuesSection(Vec, PetscSection, PetscInt, PetscScalar **); 639 PETSC_EXTERN PetscErrorCode VecSetValuesSection(Vec, PetscSection, PetscInt, PetscScalar [], InsertMode); 640 PETSC_EXTERN PetscErrorCode PetscSectionVecNorm(PetscSection, PetscSection, Vec, NormType, PetscReal []); 641 642 PETSC_EXTERN PetscErrorCode PetscSFCreateFromZero(MPI_Comm,Vec,PetscSF*); 643 644 /*S 645 VecTagger - Object used to manage the tagging of a subset of indices based on the values of a vector. The 646 motivating application is the selection of cells for refinement or coarsening based on vector containing 647 the values in an error indicator metric. 648 649 Level: advanced 650 S*/ 651 typedef struct _p_VecTagger *VecTagger; 652 653 /*J 654 VecTaggerType - String with the name of a VecTagger type 655 656 Level: advanced 657 J*/ 658 typedef const char* VecTaggerType; 659 /* tag where the vector values are in a box of explicitly defined values */ 660 #define VECTAGGERABSOLUTE "absolute" 661 /* tag where the vector values are in a box of values relative to the set of all values in the vector */ 662 #define VECTAGGERRELATIVE "relative" 663 /* tag where the vector values are in a relative range of the *cumulative distribution* of values in the vector */ 664 #define VECTAGGERCDF "cdf" 665 /* tag a vector as the union of other tags */ 666 #define VECTAGGEROR "or" 667 /* tag a vector as the intersection of other tags */ 668 #define VECTAGGERAND "and" 669 670 PETSC_EXTERN PetscClassId VEC_TAGGER_CLASSID; 671 PETSC_EXTERN PetscFunctionList VecTaggerList; 672 PETSC_EXTERN PetscErrorCode VecTaggerRegister(const char[],PetscErrorCode (*) (VecTagger)); 673 674 PETSC_EXTERN PetscErrorCode VecTaggerCreate(MPI_Comm,VecTagger *); 675 PETSC_EXTERN PetscErrorCode VecTaggerSetBlockSize(VecTagger,PetscInt); 676 PETSC_EXTERN PetscErrorCode VecTaggerGetBlockSize(VecTagger,PetscInt*); 677 PETSC_EXTERN PetscErrorCode VecTaggerSetType(VecTagger,VecTaggerType); 678 PETSC_EXTERN PetscErrorCode VecTaggerGetType(VecTagger,VecTaggerType *); 679 PETSC_EXTERN PetscErrorCode VecTaggerSetInvert(VecTagger,PetscBool); 680 PETSC_EXTERN PetscErrorCode VecTaggerGetInvert(VecTagger,PetscBool*); 681 PETSC_EXTERN PetscErrorCode VecTaggerSetFromOptions(VecTagger); 682 PETSC_EXTERN PetscErrorCode VecTaggerSetUp(VecTagger); 683 PETSC_EXTERN PetscErrorCode VecTaggerView(VecTagger,PetscViewer); 684 PETSC_EXTERN PetscErrorCode VecTaggerComputeIS(VecTagger,Vec,IS *); 685 PETSC_EXTERN PetscErrorCode VecTaggerDestroy(VecTagger *); 686 687 /*S 688 VecTaggerBox - A box range used to tag values. For real scalars, this is just a closed interval; for complex scalars, the box is the closed region in the complex plane 689 such that real(min) <= real(z) <= real(max) and imag(min) <= imag(z) <= imag(max). INF is an acceptable endpoint. 690 691 Level: beginner 692 693 .seealso: VecTaggerComputeIntervals() 694 S*/ 695 typedef struct { 696 PetscScalar min; 697 PetscScalar max; 698 } VecTaggerBox; 699 PETSC_EXTERN PetscErrorCode VecTaggerComputeBoxes(VecTagger,Vec,PetscInt *,VecTaggerBox **); 700 701 702 PETSC_EXTERN PetscErrorCode VecTaggerAbsoluteSetBox(VecTagger,VecTaggerBox *); 703 PETSC_EXTERN PetscErrorCode VecTaggerAbsoluteGetBox(VecTagger,const VecTaggerBox **); 704 705 PETSC_EXTERN PetscErrorCode VecTaggerRelativeSetBox(VecTagger,VecTaggerBox *); 706 PETSC_EXTERN PetscErrorCode VecTaggerRelativeGetBox(VecTagger,const VecTaggerBox **); 707 708 PETSC_EXTERN PetscErrorCode VecTaggerCDFSetBox(VecTagger,VecTaggerBox *); 709 PETSC_EXTERN PetscErrorCode VecTaggerCDFGetBox(VecTagger,const VecTaggerBox **); 710 711 /*E 712 VecTaggerCDFMethod - Determines what method is used to compute absolute values from cumulative distribution values (e.g., what value is the preimage of .95 in the cdf). Relevant only in parallel: in serial it is directly computed. 713 714 Level: advanced 715 .seealso: VecTaggerCDFSetMethod(), VecTaggerCDFMethods 716 E*/ 717 typedef enum {VECTAGGER_CDF_GATHER,VECTAGGER_CDF_ITERATIVE,VECTAGGER_CDF_NUM_METHODS} VecTaggerCDFMethod; 718 PETSC_EXTERN const char *const VecTaggerCDFMethods[]; 719 720 PETSC_EXTERN PetscErrorCode VecTaggerCDFSetMethod(VecTagger,VecTaggerCDFMethod); 721 PETSC_EXTERN PetscErrorCode VecTaggerCDFGetMethod(VecTagger,VecTaggerCDFMethod*); 722 PETSC_EXTERN PetscErrorCode VecTaggerCDFIterativeSetTolerances(VecTagger,PetscInt,PetscReal,PetscReal); 723 PETSC_EXTERN PetscErrorCode VecTaggerCDFIterativeGetTolerances(VecTagger,PetscInt*,PetscReal*,PetscReal*); 724 725 PETSC_EXTERN PetscErrorCode VecTaggerOrSetSubs(VecTagger,PetscInt,VecTagger*,PetscCopyMode); 726 PETSC_EXTERN PetscErrorCode VecTaggerOrGetSubs(VecTagger,PetscInt*,VecTagger**); 727 728 PETSC_EXTERN PetscErrorCode VecTaggerAndSetSubs(VecTagger,PetscInt,VecTagger*,PetscCopyMode); 729 PETSC_EXTERN PetscErrorCode VecTaggerAndGetSubs(VecTagger,PetscInt*,VecTagger**); 730 731 PETSC_EXTERN PetscErrorCode VecTaggerInitializePackage(void); 732 PETSC_EXTERN PetscErrorCode VecTaggerFinalizePackage(void); 733 734 #endif 735