1# 2# See https://petsc.org/release/install/ for instructions on installing PETSc 3# 4# This is the top level makefile for compiling PETSc. 5# * make help - useful messages on functionality 6# * make all - compile the PETSc libraries and utilities 7# * make check - runs a quick test that the libraries are built correctly and PETSc applications can run 8# 9# * make install - for use with ./configure is run with the --prefix=directory option 10# * make test - runs a comprehensive test suite (requires gnumake) 11# * make docs - build the entire PETSc website of documentation (locally) 12# * a variety of rules that print library properties useful for building applications (use make help) 13# * a variety of rules for PETSc developers 14# 15# gmakefile - manages the compiling PETSc in parallel 16# gmakefile.test - manages running the comprehensive test suite 17# 18# This makefile does not require GNUmake 19ALL: all 20DIRS = src include interfaces share/petsc/matlab 21 22# next line defines PETSC_DIR and PETSC_ARCH if they are not set 23include ././${PETSC_ARCH}/lib/petsc/conf/petscvariables 24include ${PETSC_DIR}/${PETSC_ARCH}/lib/petsc/conf/petscrules 25include ${PETSC_DIR}/lib/petsc/conf/variables 26include ${PETSC_DIR}/lib/petsc/conf/rules.doc 27include ${PETSC_DIR}/lib/petsc/conf/rules.utils 28 29# This makefile contains a lot of PHONY targets with improperly specified prerequisites 30# where correct execution instead depends on the targets being processed in the correct 31# order. 32.NOTPARALLEL: 33 34OMAKE_SELF = $(OMAKE) -f makefile 35OMAKE_SELF_PRINTDIR = $(OMAKE_PRINTDIR) -f makefile 36 37#********* Rules for make all ********************************************************************************************************************************** 38 39all: 40 +@${OMAKE_SELF} PETSC_ARCH=${PETSC_ARCH} PETSC_DIR=${PETSC_DIR} chk_upgrade | tee ${PETSC_ARCH}/lib/petsc/conf/make.log 41 @ln -sf ${PETSC_ARCH}/lib/petsc/conf/make.log make.log 42 +@(${OMAKE_SELF_PRINTDIR} PETSC_ARCH=${PETSC_ARCH} PETSC_DIR=${PETSC_DIR} all-local; echo "$$?" > ${PETSC_ARCH}/lib/petsc/conf/error.log) 2>&1 | tee -a ${PETSC_ARCH}/lib/petsc/conf/make.log 43 +@if [ "`cat ${PETSC_ARCH}/lib/petsc/conf/error.log 2> /dev/null`" != "0" ]; then \ 44 grep -E '(out of memory allocating.*after a total of|gfortran: fatal error: Killed signal terminated program f951|f95: fatal error: Killed signal terminated program f951)' ${PETSC_ARCH}/lib/petsc/conf/make.log | tee ${PETSC_ARCH}/lib/petsc/conf/memoryerror.log > /dev/null; \ 45 if test -s ${PETSC_ARCH}/lib/petsc/conf/memoryerror.log; then \ 46 printf ${PETSC_TEXT_HILIGHT}"**************************ERROR*************************************\n" 2>&1 | tee -a ${PETSC_ARCH}/lib/petsc/conf/make.log; \ 47 echo " Error during compile, you need to increase the memory allocated to the VM and rerun " 2>&1 | tee -a ${PETSC_ARCH}/lib/petsc/conf/make.log; \ 48 printf "********************************************************************"${PETSC_TEXT_NORMAL}"\n" 2>&1 | tee -a ${PETSC_ARCH}/lib/petsc/conf/make.log;\ 49 else \ 50 printf ${PETSC_TEXT_HILIGHT}"**************************ERROR*************************************\n" 2>&1 | tee -a ${PETSC_ARCH}/lib/petsc/conf/make.log; \ 51 echo " Error during compile, check ${PETSC_ARCH}/lib/petsc/conf/make.log" 2>&1 | tee -a ${PETSC_ARCH}/lib/petsc/conf/make.log; \ 52 echo " Send it and ${PETSC_ARCH}/lib/petsc/conf/configure.log to petsc-maint@mcs.anl.gov" 2>&1 | tee -a ${PETSC_ARCH}/lib/petsc/conf/make.log;\ 53 printf "********************************************************************"${PETSC_TEXT_NORMAL}"\n" 2>&1 | tee -a ${PETSC_ARCH}/lib/petsc/conf/make.log;\ 54 fi \ 55 else \ 56 ${OMAKE_SELF} print_mesg_after_build PETSC_ARCH=${PETSC_ARCH} PETSC_DIR=${PETSC_DIR} 2>&1 | tee -a ${PETSC_ARCH}/lib/petsc/conf/make.log ;\ 57 fi #solaris make likes to print the whole command that gave error. So split this up into the smallest chunk below 58 @echo "Finishing make run at `date +'%a, %d %b %Y %H:%M:%S %z'`" >> ${PETSC_ARCH}/lib/petsc/conf/make.log 59 @if [ "`cat ${PETSC_ARCH}/lib/petsc/conf/error.log 2> /dev/null`" != "0" ]; then exit 1; fi 60 61all-local: info libs matlabbin petsc4py-build libmesh-build mfem-build slepc-build hpddm-build amrex-build bamg-build 62 63${PETSC_DIR}/${PETSC_ARCH}/lib/petsc/conf/files: 64 @touch -t 197102020000 ${PETSC_DIR}/${PETSC_ARCH}/lib/petsc/conf/files 65 66${PETSC_DIR}/${PETSC_ARCH}/tests/testfiles: 67 @${MKDIR} -p ${PETSC_DIR}/${PETSC_ARCH}/tests && touch -t 197102020000 ${PETSC_DIR}/${PETSC_ARCH}/tests/testfiles 68 69libs: ${PETSC_DIR}/${PETSC_ARCH}/lib/petsc/conf/files ${PETSC_DIR}/${PETSC_ARCH}/tests/testfiles 70 +@r=`echo "${MAKEFLAGS}" | grep ' -j'`; \ 71 if [ "$$?" = 0 ]; then make_j=""; else make_j="-j${MAKE_NP}"; fi; \ 72 r=`echo "${MAKEFLAGS}" | grep ' -l'`; \ 73 if [ "$$?" = 0 ]; then make_l=""; else make_l="-l${MAKE_LOAD}"; fi; \ 74 cmd="${OMAKE_PRINTDIR} -f gmakefile $${make_j} $${make_l} ${MAKE_PAR_OUT_FLG} V=${V} libs"; \ 75 cd ${PETSC_DIR} && echo $${cmd} && exec $${cmd} 76 77chk_upgrade: 78 -@PETSC_DIR=${PETSC_DIR} ${PYTHON} ${PETSC_DIR}/lib/petsc/bin/petscnagupgrade.py 79 80matlabbin: 81 -@if [ "${MATLAB_MEX}" != "" -a "${MATLAB_SOCKET}" != "" -a "${PETSC_SCALAR}" = "real" -a "${PETSC_PRECISION}" = "double" ]; then \ 82 echo "BEGINNING TO COMPILE MATLAB INTERFACE"; \ 83 if [ ! -d "${PETSC_DIR}/${PETSC_ARCH}/lib/petsc" ] ; then ${MKDIR} ${PETSC_DIR}/${PETSC_ARCH}/lib/petsc; fi; \ 84 if [ ! -d "${PETSC_DIR}/${PETSC_ARCH}/lib/petsc/matlab" ] ; then ${MKDIR} ${PETSC_DIR}/${PETSC_ARCH}/lib/petsc/matlab; fi; \ 85 cd src/sys/classes/viewer/impls/socket/mex-scripts && ${OMAKE_SELF} mex-scripts PETSC_ARCH=${PETSC_ARCH} PETSC_DIR=${PETSC_DIR}; \ 86 echo "========================================="; \ 87 fi 88 89allfortranstubs: 90 -@${RM} -rf ${PETSC_ARCH}/include/petsc/finclude/ftn-auto/*-tmpdir 91 @${PYTHON} lib/petsc/bin/maint/generatefortranstubs.py ${BFORT} ${VERBOSE} 92 -@${PYTHON} lib/petsc/bin/maint/generatefortranstubs.py -merge ${VERBOSE} 93 -@${RM} -rf ${PETSC_ARCH}/include/petsc/finclude/ftn-auto/*-tmpdir 94 95deleteshared: 96 @for LIBNAME in ${SHLIBS}; \ 97 do \ 98 if [ -d ${INSTALL_LIB_DIR}/$${LIBNAME}.dylib.dSYM ]; then \ 99 echo ${RM} -rf ${INSTALL_LIB_DIR}/$${LIBNAME}.dylib.dSYM; \ 100 ${RM} -rf ${INSTALL_LIB_DIR}/$${LIBNAME}.dylib.dSYM; \ 101 fi; \ 102 echo ${RM} ${INSTALL_LIB_DIR}/$${LIBNAME}.${SL_LINKER_SUFFIX}; \ 103 ${RM} ${INSTALL_LIB_DIR}/$${LIBNAME}.${SL_LINKER_SUFFIX}; \ 104 done 105 @if [ -f ${INSTALL_LIB_DIR}/so_locations ]; then \ 106 echo ${RM} ${INSTALL_LIB_DIR}/so_locations; \ 107 ${RM} ${INSTALL_LIB_DIR}/so_locations; \ 108 fi 109 110deletefortranstubs: 111 -@find . -type d -name ftn-auto | xargs rm -rf 112 113reconfigure: allclean 114 @unset MAKEFLAGS && ${PYTHON} ${PETSC_ARCH}/lib/petsc/conf/reconfigure-${PETSC_ARCH}.py 115 116chkopts: 117 -@echo "Warning: chkopts target is deprecated and can be removed from user makefiles" 118 119gnumake: 120 +@echo "make gnumake is deprecated, use make libs" 121 +@make libs 122 123# ******** Rules for make check **************************************************************************************************************************** 124 125RUN_TEST = ${OMAKE_SELF} PETSC_ARCH=${PETSC_ARCH} PETSC_DIR=${PETSC_DIR} DIFF=${PETSC_DIR}/lib/petsc/bin/petscdiff 126 127check_install: check 128check: 129 -@echo "Running check examples to verify correct installation" 130 -@echo "Using PETSC_DIR=${PETSC_DIR} and PETSC_ARCH=${PETSC_ARCH}" 131 @if [ "${PETSC_WITH_BATCH}" != "" ]; then \ 132 echo "Running with batch filesystem, cannot run make check"; \ 133 elif [ "${MPIEXEC}" = "/bin/false" ]; then \ 134 echo "*mpiexec not found*. cannot run make check"; \ 135 else \ 136 ${RM} -f check_error;\ 137 ${RUN_TEST} PETSC_OPTIONS="${PETSC_OPTIONS} ${PETSC_TEST_OPTIONS}" PATH="${PETSC_DIR}/${PETSC_ARCH}/lib:${PATH}" check_build 2>&1 | tee ./${PETSC_ARCH}/lib/petsc/conf/check.log; \ 138 if [ -f check_error ]; then \ 139 echo "Error while running make check"; \ 140 ${RM} -f check_error;\ 141 exit 1; \ 142 fi; \ 143 ${RM} -f check_error;\ 144 fi; 145 146check_build: 147 +@cd src/snes/tutorials >/dev/null; ${RUN_TEST} clean-legacy 148 +@cd src/snes/tutorials >/dev/null; ${RUN_TEST} testex19 149 +@if [ ! "${MPI_IS_MPIUNI}" ]; then cd src/snes/tutorials >/dev/null; ${RUN_TEST} testex19_mpi; fi 150 +@if [ "${HYPRE_LIB}" != "" ] && [ "${PETSC_SCALAR}" = "real" ]; then \ 151 if [ "${CUDA_LIB}" != "" ]; then HYPRE_TEST=runex19_hypre_cuda; \ 152 elif [ "${HIP_LIB}" != "" ]; then HYPRE_TEST=runex19_hypre_hip; \ 153 else HYPRE_TEST=runex19_hypre; fi; \ 154 cd src/snes/tutorials >/dev/null; ${RUN_TEST} $${HYPRE_TEST}; \ 155 fi; 156 +@if [ "${CUDA_LIB}" != "" ]; then \ 157 cd src/snes/tutorials >/dev/null; ${RUN_TEST} runex19_cuda; \ 158 fi; 159 +@if [ "${MPI_IS_MPIUNI}" = "" ]; then \ 160 cd src/snes/tutorials >/dev/null; \ 161 if [ "${KOKKOS_KERNELS_LIB}" != "" ] && [ "${PETSC_SCALAR}" = "real" ] && [ "${PETSC_PRECISION}" = "double" ]; then \ 162 ${RUN_TEST} runex3k_kokkos; \ 163 fi;\ 164 if [ "${MUMPS_LIB}" != "" ]; then \ 165 ${RUN_TEST} runex19_fieldsplit_mumps; \ 166 fi;\ 167 if [ "${SUITESPARSE_LIB}" != "" ]; then \ 168 ${RUN_TEST} runex19_suitesparse; \ 169 fi;\ 170 if [ "${SUPERLU_DIST_LIB}" != "" ]; then \ 171 ${RUN_TEST} runex19_superlu_dist; \ 172 fi;\ 173 if ( [ "${ML_LIB}" != "" ] || [ "${TRILINOS_LIB}" != "" ] ); then \ 174 ${RUN_TEST} runex19_ml; \ 175 fi; \ 176 ${RUN_TEST} clean-legacy; \ 177 cd - > /dev/null; \ 178 if ( [ "${AMREX_LIB}" != "" ] && [ "${CUDA_LIB}" = "" ] ); then \ 179 echo "Running amrex test example to verify correct installation";\ 180 echo "Using PETSC_DIR=${PETSC_DIR} and PETSC_ARCH=${PETSC_ARCH}";\ 181 cd src/ksp/ksp/tutorials/amrex >/dev/null;\ 182 ${RUN_TEST} clean-legacy; \ 183 ${RUN_TEST} testamrex; \ 184 ${RUN_TEST} clean-legacy; \ 185 cd - > /dev/null; \ 186 fi;\ 187 fi; 188 +@if [ "${HDF5_LIB}" != "" ]; then \ 189 cd src/vec/vec/tests >/dev/null;\ 190 ${RUN_TEST} clean-legacy; \ 191 ${RUN_TEST} runex47; \ 192 ${RUN_TEST} clean-legacy; \ 193 fi; 194 +@if [ "${MPI4PY}" = "yes" ]; then \ 195 cd src/sys/tests >/dev/null; \ 196 ${RUN_TEST} clean-legacy; \ 197 ${RUN_TEST} testex55; \ 198 ${RUN_TEST} clean-legacy; \ 199 fi; 200 +@if [ "${PETSC4PY}" = "yes" ]; then \ 201 cd src/ksp/ksp/tutorials >/dev/null; \ 202 ${RUN_TEST} clean-legacy; \ 203 ${RUN_TEST} testex100; \ 204 ${RUN_TEST} clean-legacy; \ 205 fi; 206 +@grep -E "^#define PETSC_HAVE_FORTRAN 1" ${PETSCCONF_H} | tee .ftn.log > /dev/null; \ 207 if test -s .ftn.log; then \ 208 cd src/snes/tutorials >/dev/null; \ 209 ${RUN_TEST} clean-legacy; \ 210 ${RUN_TEST} testex5f; \ 211 ${RUN_TEST} clean-legacy; \ 212 fi; ${RM} .ftn.log; 213 +@grep -E "^#define PETSC_HAVE_MATLAB 1" ${PETSCCONF_H} | tee .ftn.log > /dev/null; \ 214 if test -s .ftn.log; then \ 215 cd src/vec/vec/tutorials >/dev/null; \ 216 ${RUN_TEST} clean-legacy; \ 217 ${RUN_TEST} testex31; \ 218 ${RUN_TEST} clean-legacy; \ 219 fi; ${RM} .ftn.log; 220 -@echo "Completed test examples" 221 222# ********* Rules for make install ******************************************************************************************************************* 223 224install: 225 @${PYTHON} ./config/install.py -destDir=${DESTDIR} 226 +${OMAKE_SELF} PETSC_ARCH=${PETSC_ARCH} PETSC_DIR=${PETSC_DIR} PETSC_INSTALL=$@ install-builtafterpetsc 227 228# A smaller install with fewer extras 229install-lib: 230 @${PYTHON} ./config/install.py -destDir=${DESTDIR} -no-examples 231 +${OMAKE_SELF} PETSC_ARCH=${PETSC_ARCH} PETSC_DIR=${PETSC_DIR} PETSC_INSTALL=$@ install-builtafterpetsc 232 233install-builtafterpetsc: 234 +${OMAKE_SELF} PETSC_ARCH=${PETSC_ARCH} PETSC_DIR=${PETSC_DIR} PETSC_INSTALL=${PETSC_INSTALL} petsc4py-install libmesh-install mfem-install slepc-install hpddm-install amrex-install bamg-install 235 236# Creates ${HOME}/petsc.tar.gz [and petsc-with-docs.tar.gz] 237dist: 238 ${PETSC_DIR}/lib/petsc/bin/maint/builddist ${PETSC_DIR} main 239 240# ******** Rules for running the full test suite ******************************************************************************************************** 241 242TESTMODE = testexamples 243ALLTESTS_CHECK_FAILURES = no 244ALLTESTS_MAKEFILE = ${PETSC_DIR}/gmakefile.test 245VALGRIND=0 246alltests: chk_in_petscdir ${PETSC_DIR}/${PETSC_ARCH}/tests/testfiles 247 -@${RM} -rf ${PETSC_ARCH}/lib/petsc/conf/alltests.log alltests.log 248 +@if [ -f ${PETSC_DIR}/share/petsc/examples/gmakefile.test ] ; then \ 249 ALLTESTS_MAKEFILE=${PETSC_DIR}/share/petsc/examples/gmakefile.test ; \ 250 ALLTESTSLOG=alltests.log ;\ 251 else \ 252 ALLTESTS_MAKEFILE=${PETSC_DIR}/gmakefile.test; \ 253 ALLTESTSLOG=${PETSC_ARCH}/lib/petsc/conf/alltests.log ;\ 254 ln -s $${ALLTESTSLOG} alltests.log ;\ 255 fi; \ 256 ${OMAKE} allgtest ALLTESTS_MAKEFILE=$${ALLTESTS_MAKEFILE} PETSC_ARCH=${PETSC_ARCH} PETSC_DIR=${PETSC_DIR} MPIEXEC="${MPIEXEC}" DATAFILESPATH=${DATAFILESPATH} VALGRIND=${VALGRIND} 2>&1 | tee $${ALLTESTSLOG};\ 257 if [ x${ALLTESTS_CHECK_FAILURES} = xyes -a ${PETSC_PRECISION} != single ]; then \ 258 cat $${ALLTESTSLOG} | grep -E '(^not ok|not remade because of errors|^# No tests run)' | wc -l | grep '^[ ]*0$$' > /dev/null; \ 259 fi; 260 261allgtests-tap: allgtest-tap 262 +@${OMAKE} -f ${ALLTESTS_MAKEFILE} PETSC_ARCH=${PETSC_ARCH} PETSC_DIR=${PETSC_DIR} check-test-errors 263 264allgtest-tap: ${PETSC_DIR}/${PETSC_ARCH}/tests/testfiles 265 +@MAKEFLAGS="-j$(MAKE_TEST_NP) -l$(MAKE_LOAD) $(MAKEFLAGS)" ${OMAKE} -f ${ALLTESTS_MAKEFILE} PETSC_ARCH=${PETSC_ARCH} PETSC_DIR=${PETSC_DIR} test OUTPUT=1 266 267allgtest: ${PETSC_DIR}/${PETSC_ARCH}/tests/testfiles 268 +@MAKEFLAGS="-j$(MAKE_TEST_NP) -l$(MAKE_LOAD) $(MAKEFLAGS)" ${OMAKE} -k -f ${ALLTESTS_MAKEFILE} PETSC_ARCH=${PETSC_ARCH} PETSC_DIR=${PETSC_DIR} test V=0 2>&1 | grep -E -v '^(ok [^#]*(# SKIP|# TODO|$$)|[A-Za-z][A-Za-z0-9_]*\.(c|F|cxx|F90).$$)' 269 270test: 271 +${OMAKE} -f ${ALLTESTS_MAKEFILE} PETSC_ARCH=${PETSC_ARCH} PETSC_DIR=${PETSC_DIR} test 272cleantest: 273 +${OMAKE} -f ${ALLTESTS_MAKEFILE} PETSC_ARCH=${PETSC_ARCH} PETSC_DIR=${PETSC_DIR} cleantest 274 275#********* Rules for cleaning *************************************************************************************************************************** 276 277deletelibs: 278 -${RM} -rf ${PETSC_LIB_DIR}/libpetsc*.* 279deletemods: 280 -${RM} -f ${PETSC_DIR}/${PETSC_ARCH}/include/petsc*.mod 281 282allclean: 283 -@${OMAKE} -f gmakefile clean 284 285clean:: allclean 286 287distclean: 288 @if [ -f ${PETSC_DIR}/${PETSC_ARCH}/lib/petsc/conf/reconfigure-${PETSC_ARCH}.py ]; then \ 289 echo "*** Preserving ${PETSC_DIR}/${PETSC_ARCH}/lib/petsc/conf/reconfigure-${PETSC_ARCH}.py in ${PETSC_DIR} ***"; \ 290 mv -f ${PETSC_DIR}/${PETSC_ARCH}/lib/petsc/conf/reconfigure-${PETSC_ARCH}.py ${PETSC_DIR}/; fi 291 @echo "*** Deleting all build files in ${PETSC_DIR}/${PETSC_ARCH} ***" 292 -${RM} -rf ${PETSC_DIR}/${PETSC_ARCH}/ 293 294info: 295 -@echo "==========================================" 296 -@echo " " 297 -@echo "See documentation/faq.html and documentation/bugreporting.html" 298 -@echo "for help with installation problems. Please send EVERYTHING" 299 -@echo "printed out below when reporting problems. Please check the" 300 -@echo "mailing list archives and consider subscribing." 301 -@echo " " 302 -@echo " https://petsc.org/release/community/mailing/" 303 -@echo " " 304 -@echo "==========================================" 305 -@echo Starting make run on `hostname` at `date +'%a, %d %b %Y %H:%M:%S %z'` 306 -@echo Machine characteristics: `uname -a` 307 -@echo "-----------------------------------------" 308 -@echo "Using PETSc directory: ${PETSC_DIR}" 309 -@echo "Using PETSc arch: ${PETSC_ARCH}" 310 -@echo "-----------------------------------------" 311 -@grep "define PETSC_VERSION" ${PETSC_DIR}/include/petscversion.h | ${SED} "s/........//" | head -n 7 312 -@echo "-----------------------------------------" 313 -@echo "Using configure Options: ${CONFIGURE_OPTIONS}" 314 -@echo "Using configuration flags:" 315 -@grep "\#define " ${PETSCCONF_H} | tail -n +2 316 -@echo "-----------------------------------------" 317 -@echo "Using C compile: ${PETSC_CCOMPILE_SINGLE}" 318 -@if [ "${MPICC_SHOW}" != "" ]; then \ 319 printf "mpicc -show: %b\n" "${MPICC_SHOW}";\ 320 fi; \ 321 printf "C compiler version: %b\n" "${C_VERSION}"; \ 322 if [ "${CXX}" != "" ]; then \ 323 echo "Using C++ compile: ${PETSC_CXXCOMPILE_SINGLE}";\ 324 if [ "${MPICXX_SHOW}" != "" ]; then \ 325 printf "mpicxx -show: %b\n" "${MPICXX_SHOW}"; \ 326 fi;\ 327 printf "C++ compiler version: %b\n" "${Cxx_VERSION}"; \ 328 fi 329 -@if [ "${FC}" != "" ]; then \ 330 echo "Using Fortran compile: ${PETSC_FCOMPILE_SINGLE}";\ 331 if [ "${MPIFC_SHOW}" != "" ]; then \ 332 printf "mpif90 -show: %b\n" "${MPIFC_SHOW}"; \ 333 fi; \ 334 printf "Fortran compiler version: %b\n" "${FC_VERSION}"; \ 335 fi 336 -@if [ "${CUDAC}" != "" ]; then \ 337 echo "Using CUDA compile: ${PETSC_CUCOMPILE_SINGLE}";\ 338 fi 339 -@if [ "${CLANGUAGE}" = "CXX" ]; then \ 340 echo "Using C++ compiler to compile PETSc";\ 341 fi 342 -@echo "-----------------------------------------" 343 -@echo "Using C/C++ linker: ${PCC_LINKER}" 344 -@echo "Using C/C++ flags: ${PCC_LINKER_FLAGS}" 345 -@if [ "${FC}" != "" ]; then \ 346 echo "Using Fortran linker: ${FC_LINKER}";\ 347 echo "Using Fortran flags: ${FC_LINKER_FLAGS}";\ 348 fi 349 -@echo "-----------------------------------------" 350 -@echo "Using system modules: ${LOADEDMODULES}" 351 -@if [ "${MPI_IS_MPIUNI}" = "1" ]; then \ 352 echo Using mpi.h: mpiuni; \ 353 else \ 354 TESTDIR=`mktemp -q -d -t petscmpi-XXXXXXXX` && \ 355 echo '#include <mpi.h>' > $${TESTDIR}/mpitest.c && \ 356 BUF=`${CPP} ${PETSC_CPPFLAGS} ${PETSC_CC_INCLUDES} $${TESTDIR}/mpitest.c |grep 'mpi\.h' | ( head -1 ; cat > /dev/null )` && \ 357 echo Using mpi.h: $${BUF}; ${RM} -rf $${TESTDIR}; \ 358 fi 359 -@echo "-----------------------------------------" 360 -@echo "Using libraries: ${PETSC_LIB}" 361 -@echo "------------------------------------------" 362 -@echo "Using mpiexec: ${MPIEXEC}" 363 -@echo "------------------------------------------" 364 -@echo "Using MAKE: ${MAKE}" 365 -@echo "Default MAKEFLAGS: MAKE_NP:${MAKE_NP} MAKE_LOAD:${MAKE_LOAD} MAKEFLAGS:${MAKEFLAGS}" 366 -@echo "==========================================" 367 368 369check_usermakefile: 370 -@echo "Testing compile with user makefile" 371 -@echo "Using PETSC_DIR=${PETSC_DIR} and PETSC_ARCH=${PETSC_ARCH}" 372 @cd src/snes/tutorials; ${RUN_TEST} clean-legacy 373 @cd src/snes/tutorials; ${OMAKE} PETSC_ARCH=${PETSC_ARCH} PETSC_DIR=${PETSC_DIR} -f ${PETSC_DIR}/share/petsc/Makefile.user ex19 374 @grep -E "^#define PETSC_HAVE_FORTRAN 1" ${PETSCCONF_H} | tee .ftn.log > /dev/null; \ 375 if test -s .ftn.log; then \ 376 cd src/snes/tutorials; ${OMAKE} PETSC_ARCH=${PETSC_ARCH} PETSC_DIR=${PETSC_DIR} -f ${PETSC_DIR}/share/petsc/Makefile.user ex5f; \ 377 fi; ${RM} .ftn.log; 378 @cd src/snes/tutorials; ${RUN_TEST} clean-legacy 379 -@echo "Completed compile with user makefile" 380 381#********* Rules for running clangformat ************************************************************************************************************ 382 383checkgitclean: 384 @if ! git diff --quiet; then \ 385 echo "The repository has uncommitted files, cannot run checkclangformat" ;\ 386 git status -s --untracked-files=no ;\ 387 false;\ 388 fi; 389 390checkclangformatversion: 391 @version=`clang-format --version | cut -d" " -f3 | cut -d"." -f 1` ;\ 392 if [ "$$version" == "version" ]; then version=`clang-format --version | cut -d" " -f4 | cut -d"." -f 1`; fi;\ 393 if [ $$version != 16 ]; then echo "Require clang-format version 16! Currently used clang-format version is $$version" ;false ; fi 394 395# Check that all the source code in the repository satisfies the .clang_format 396checkclangformat: checkclangformatversion checkgitclean clangformat 397 @if ! git diff --quiet; then \ 398 printf "The current commit has source code formatting problems\n" ;\ 399 if [ -z "${CI_PIPELINE_ID}" ]; then \ 400 printf "Please run 'git diff' to check\n"; \ 401 git diff --stat; \ 402 else \ 403 git diff --patch-with-stat > ${PETSC_ARCH}/lib/petsc/conf/checkclangformat.patch; \ 404 git diff --patch-with-stat --color=always | head -1000; \ 405 if [ `wc -l < ${PETSC_ARCH}/lib/petsc/conf/checkclangformat.patch` -gt 1000 ]; then \ 406 printf "The diff has been trimmed, check ${PETSC_ARCH}/lib/petsc/conf/checkclangformat.patch (in CI artifacts) for all changes\n"; \ 407 fi;\ 408 fi;\ 409 false;\ 410 fi; 411 412# Compare ABI/API of two versions of PETSc library with the old one defined by PETSC_{DIR,ARCH}_ABI_OLD 413abitest: 414 @if [ "${PETSC_DIR_ABI_OLD}" = "" ] || [ "${PETSC_ARCH_ABI_OLD}" = "" ]; \ 415 then printf "You must set environment variables PETSC_DIR_ABI_OLD and PETSC_ARCH_ABI_OLD to run abitest\n"; \ 416 exit 1; \ 417 fi; 418 -@echo "Comparing ABI/API of the following two PETSc versions (you must have already configured and built them using GCC and with -g):" 419 -@echo "=========================================================================================" 420 -@echo " Old: PETSC_DIR_ABI_OLD = ${PETSC_DIR_ABI_OLD}" 421 -@echo " PETSC_ARCH_ABI_OLD = ${PETSC_ARCH_ABI_OLD}" 422 -@pushd ${PETSC_DIR_ABI_OLD} >> /dev/null ; echo " Branch = "`git rev-parse --abbrev-ref HEAD` 423 -@echo " New: PETSC_DIR = ${PETSC_DIR}" 424 -@echo " PETSC_ARCH = ${PETSC_ARCH}" 425 -@echo " Branch = "`git rev-parse --abbrev-ref HEAD` 426 -@echo "=========================================================================================" 427 -@$(PYTHON) ${PETSC_DIR}/lib/petsc/bin/maint/abicheck.py -old_dir ${PETSC_DIR_ABI_OLD} -old_arch ${PETSC_ARCH_ABI_OLD} -new_dir ${PETSC_DIR} -new_arch ${PETSC_ARCH} -report_format html 428 429# Compare ABI/API of current PETSC_ARCH/PETSC_DIR with a previous branch 430abitestcomplete: 431 -@if [[ -f "${PETSC_DIR}/${PETSC_ARCH}/lib/petsc/conf/configure.log" ]]; then \ 432 OPTIONS=`grep -h -m 1 "Configure Options: " ${PETSC_DIR}/${PETSC_ARCH}/lib/petsc/conf/configure.log | sed "s!Configure Options: --configModules=PETSc.Configure --optionsModule=config.compilerOptions!!g"` ;\ 433echo $${OPTIONS} ;\ 434 fi ; \ 435 if [[ "${PETSC_DIR_ABI_OLD}" != "" ]]; then \ 436 PETSC_DIR_OLD=${PETSC_DIR_ABI_OLD}; \ 437 else \ 438 PETSC_DIR_OLD=${PETSC_DIR}/../petsc-abi; \ 439 fi ; \ 440 echo "=================================================================================================" ;\ 441 echo "Doing ABI/API comparison between" ${branch} " and " `git rev-parse --abbrev-ref HEAD` "using " $${OPTIONS} ;\ 442 echo "=================================================================================================" ;\ 443 if [[ ! -d $${PETSC_DIR_OLD} ]]; then \ 444 git clone ${PETSC_DIR} $${PETSC_DIR_OLD} ; \ 445 else \ 446 cd $${PETSC_DIR_OLD} ; \ 447 git pull ; \ 448 fi ; \ 449 cd $${PETSC_DIR_OLD} ; \ 450 git checkout ${branch} ; \ 451 PETSC_DIR=`pwd` PETSC_ARCH=arch-branch-`git rev-parse ${branch}` ./configure $${OPTIONS} ; \ 452 PETSC_DIR=`pwd` PETSC_ARCH=arch-branch-`git rev-parse ${branch}` make all test ; \ 453 cd ${PETSC_DIR} ; \ 454 ./configure $${OPTIONS}; \ 455 make all test ; \ 456 PETSC_DIR_ABI_OLD=$${PETSC_DIR_OLD} PETSC_ARCH_ABI_OLD=arch-branch-`git rev-parse ${branch}` make abitest 457 458# ******** Rules for running Streams benchmark **************************************************************************************************** 459 460mpistreams: 461 +@cd src/benchmarks/streams; ${OMAKE_SELF} PATH="${PETSC_DIR}/${PETSC_ARCH}/lib:${PATH}" PETSC_DIR=${PETSC_DIR} PETSC_ARCH=${PETSC_ARCH} mpistreams 462 463mpistream: 464 +@cd src/benchmarks/streams; ${OMAKE_SELF} PATH="${PETSC_DIR}/${PETSC_ARCH}/lib:${PATH}" PETSC_DIR=${PETSC_DIR} PETSC_ARCH=${PETSC_ARCH} mpistream 465 466openmpstreams: 467 +@cd src/benchmarks/streams; ${OMAKE_SELF} PATH="${PETSC_DIR}/${PETSC_ARCH}/lib:${PATH}" PETSC_DIR=${PETSC_DIR} PETSC_ARCH=${PETSC_ARCH} openmpstreams 468 469openmpstream: 470 +@cd src/benchmarks/streams; ${OMAKE_SELF} PATH="${PETSC_DIR}/${PETSC_ARCH}/lib:${PATH}" PETSC_DIR=${PETSC_DIR} PETSC_ARCH=${PETSC_ARCH} openmpstream 471 472stream: mpistream 473 474streams: mpistreams 475 476# ******** Rules for generating tag files for Emacs/VIM ******************************************************************************************* 477 478alletags: 479 -@${PYTHON} lib/petsc/bin/maint/generateetags.py 480 -@find config -type f -name "*.py" |grep -v SCCS | xargs etags -o TAGS_PYTHON 481 482# obtain gtags from https://www.gnu.org/software/global/ 483allgtags: 484 -@find ${PETSC_DIR}/include ${PETSC_DIR}/src -regex '\(.*makefile\|.*\.\(cc\|hh\|cpp\|cxx\|C\|hpp\|c\|h\|cu\|m\)$$\)' | grep -v ftn-auto | gtags -f - 485 486# ********* Rules for building "classic" documentation; uses rules also in lib/petsc/conf/rules.doc ************************************************** 487 488docs: 489 cd doc; ${OMAKE_SELF} sphinxhtml 490 491chk_in_petscdir: 492 @if [ ! -f include/petscversion.h ]; then \ 493 printf ${PETSC_TEXT_HILIGHT}"*********************** ERROR **********************************************\n" ; \ 494 echo " This target should be invoked in top level PETSc source dir!"; \ 495 printf "****************************************************************************"${PETSC_TEXT_NORMAL}"\n" ; false; fi 496 497chk_loc: 498 @if [ ${LOC}foo = foo ] ; then \ 499 printf ${PETSC_TEXT_HILIGHT}"*********************** ERROR **********************************************\n" ; \ 500 echo " Please specify LOC variable for eg: make allmanpages LOC=/sandbox/petsc "; \ 501 printf "****************************************************************************"${PETSC_TEXT_NORMAL}"\n" ; false; fi 502 @${MKDIR} ${LOC}/manualpages 503 504chk_c2html: 505 @if [ ${C2HTML}foo = foo ] ; then \ 506 printf ${PETSC_TEXT_HILIGHT}"*********************** ERROR ************************\n" ; \ 507 echo "Require c2html for html docs. Please reconfigure with --download-c2html=1"; \ 508 printf "******************************************************"${PETSC_TEXT_NORMAL}"\n" ;false; fi 509 510 511# the ACTION=manualpages cannot run in parallel because they all write to the same manualpages.cit file 512hloc=include/petsc/private 513allmanpages: chk_loc deletemanualpages 514 -echo " /* SUBMANSEC = PetscH */ " > ${hloc}/generated_khash.h 515 -sed -e 's?<T>?I?g' -e 's?<t>?i?g' -e 's?<KeyType>?PetscInt?g' ${hloc}/hashset.txt >> ${hloc}/generated_khash.h 516 -sed -e 's?<T>?IJ?g' -e 's?<t>?ij?g' -e 's?<KeyType>?struct {PetscInt i, j;}?g' ${hloc}/hashset.txt >> ${hloc}/generated_khash.h 517 -sed -e 's?<T>?I?g' -e 's?<t>?i?g' -e 's?<KeyType>?PetscInt?g' -e 's?<ValType>?PetscInt?g' ${hloc}/hashmap.txt >> ${hloc}/generated_khash.h 518 -sed -e 's?<T>?IJ?g' -e 's?<t>?ij?g' -e 's?<KeyType>?struct {PetscInt i, j;}?g' -e 's?<ValType>?PetscInt?g' ${hloc}/hashmap.txt >> ${hloc}/generated_khash.h 519 -sed -e 's?<T>?IJ?g' -e 's?<t>?ij?g' -e 's?<KeyType>?struct {PetscInt i, j;}?g' -e 's?<ValType>?PetscScalar?g' ${hloc}/hashmap.txt >> ${hloc}/generated_khash.h 520 -sed -e 's?<T>?IV?g' -e 's?<t>?iv?g' -e 's?<KeyType>?PetscInt?g' -e 's?<ValType>?PetscScalar?g' ${hloc}/hashmap.txt >> ${hloc}/generated_khash.h 521 -sed -e 's?<T>?Obj?g' -e 's?<t>?obj?g' -e 's?<KeyType>?PetscInt64?g' -e 's?<ValType>?PetscObject?g' ${hloc}/hashmap.txt >> ${hloc}/generated_khash.h 522 -${RM} ${PETSC_DIR}/${PETSC_ARCH}/manualpages.err 523 -${OMAKE_SELF} ACTION=manualpages tree_src LOC=${LOC} 524 -@sed -e s%man+../%man+manualpages/% ${LOC}/manualpages/manualpages.cit > ${LOC}/manualpages/htmlmap 525 -@cat ${PETSC_DIR}/doc/classic/mpi.www.index >> ${LOC}/manualpages/htmlmap 526 cat ${PETSC_DIR}/${PETSC_ARCH}/manualpages.err 527 a=`cat ${PETSC_DIR}/${PETSC_ARCH}/manualpages.err | wc -l`; test ! $$a -gt 0 528 529allmanexamples: chk_loc allmanpages 530 -${OMAKE_SELF} ACTION=manexamples tree LOC=${LOC} 531 532# 533# Goes through all manual pages adding links to implementations of the method 534# or class, at the end of the file. 535# 536# To find functions implementing methods, we use git grep to look for 537# well-formed PETSc functions 538# - with names containing a single underscore 539# - in files of appropriate types (.cu .c .cxx .h), 540# - in paths including "/impls/", 541# - excluding any line with a semicolon (to avoid matching prototypes), and 542# - excluding any line including "_Private", 543# storing potential matches in implsFuncAll.txt. 544# 545# For each man page we then grep in this file for the item's name followed by 546# a single underscore and process the resulting implsFunc.txt to generate HTML. 547# 548# To find class implementations, we populate implsClassAll.txt with candidates 549# - of the form "struct _p_itemName {", and 550# - not containing a semicolon 551# and then grep for particular values of itemName, generating implsClass.txt, 552# which is processed to generate HTML. 553# 554# Note: PETSC_DOC_OUT_ROOT_PLACEHOLDER must match the term used elsewhere in doc/ 555manimplementations: 556 -@git grep "struct\s\+_[pn]_[^\s]\+.*{" -- *.cpp *.cu *.c *.h *.cxx | grep -v -e ";" -e "/tests/" -e "/tutorials/" > implsClassAll.txt ; \ 557 git grep -n "^\(static \)\?\(PETSC_EXTERN \)\?\(PETSC_INTERN \)\?\(extern \)\?PetscErrorCode \+[^_ ]\+_[^_ ]\+(" -- '*/impls/*.c' '*/impls/*.cpp' '*/impls/*.cu' '*/impls/*.cxx' '*/impls/*.h' | grep -v -e ";" -e "_[Pp]rivate" > implsFuncAll.txt ; \ 558 for i in ${LOC}/manualpages/*/*.md foo; do \ 559 if [ "$$i" != "foo" ] ; then \ 560 itemName=`basename $$i .md`;\ 561 grep "\s$${itemName}_" implsFuncAll.txt > implsFunc.txt ; \ 562 grep "_p_$${itemName}\b" implsClassAll.txt > implsClass.txt ; \ 563 if [ -s implsFunc.txt ] || [ -s implsClass.txt ] ; then \ 564 printf "\n## Implementations\n\n" >> $$i; \ 565 fi ; \ 566 if [ -s implsFunc.txt ] ; then \ 567 sed "s?\(.*\.[ch]x*u*\).*\($${itemName}.*\)(.*)?<A HREF=\"PETSC_DOC_OUT_ROOT_PLACEHOLDER/\1.html#\2\">\2 in \1</A><BR>?" implsFunc.txt >> $$i ; \ 568 fi ; \ 569 if [ -s implsClass.txt ] ; then \ 570 sed "s?\(.*\.[ch]x*u*\):.*\(_p_$${itemName}\)\b.*{?<A HREF=\"PETSC_DOC_OUT_ROOT_PLACEHOLDER/\1.html#\2\">\2 in \1</A><BR>?" implsClass.txt >> $$i ; \ 571 fi ; \ 572 ${RM} implsFunc.txt implsClass.txt; \ 573 fi ; \ 574 done ; \ 575 ${RM} implsClassAll.txt implsFuncAll.txt 576 577# Build all classic docs except html sources 578alldoc_pre: chk_loc allmanpages allmanexamples 579 -${OMAKE_SELF} LOC=${LOC} manimplementations 580 -${PYTHON} lib/petsc/bin/maint/wwwindex.py ${PETSC_DIR} ${LOC} 581 582# Run after alldoc_pre to build html sources 583alldoc_post: chk_loc chk_c2html 584 -@if command -v parallel &> /dev/null; then \ 585 ls include/makefile src/*/makefile | xargs dirname | parallel -j ${MAKE_TEST_NP} --load ${MAKE_LOAD} 'cd {}; ${OMAKE_SELF} HTMLMAP=${HTMLMAP} LOC=${LOC} PETSC_DIR=${PETSC_DIR} ACTION=html tree' ; \ 586 else \ 587 ${OMAKE_SELF} HTMLMAP=${HTMLMAP} LOC=${LOC} PETSC_DIR=${PETSC_DIR} ACTION=html tree; \ 588 fi 589 590alldocclean: deletemanualpages allcleanhtml 591 592# Deletes man pages (.md version) 593deletemanualpages: chk_loc 594 -@if [ -d ${LOC} -a -d ${LOC}/manualpages ]; then \ 595 find ${LOC}/manualpages -type f -name "*.md" -exec ${RM} {} \; ;\ 596 ${RM} ${LOC}/manualpages/manualpages.cit ;\ 597 fi 598 599allcleanhtml: 600 -${OMAKE_SELF} ACTION=cleanhtml PETSC_DIR=${PETSC_DIR} tree 601 602# ********* Rules for checking code coverage ********************************************************************************************* 603 604gcov: 605 output_file_base_name=${PETSC_ARCH}-gcovr-report.json; \ 606 petsc_arch_dir=${PETSC_DIR}/${PETSC_ARCH}; \ 607 tar_file=$${petsc_arch_dir}/$${output_file_base_name}.tar.bz2; \ 608 cd $${petsc_arch_dir}/obj && \ 609 gcovr --json --output $${petsc_arch_dir}/$${output_file_base_name} --exclude '.*/ftn-auto/.*' --exclude-lines-by-pattern '^\s*SETERR.*' --exclude-throw-branches --exclude-unreachable-branches -j 4 --gcov-executable "${PETSC_COVERAGE_EXEC}" --root ${PETSC_DIR} . ${PETSC_GCOV_OPTIONS} && \ 610 ${RM} -f $${tar_file} && \ 611 tar --bzip2 -cf $${tar_file} -C $${petsc_arch_dir} ./$${output_file_base_name} && \ 612 ${RM} $${petsc_arch_dir}/$${output_file_base_name} 613 614mergegcov: 615 $(PYTHON) ${PETSC_DIR}/lib/petsc/bin/maint/gcov.py --merge-branch `lib/petsc/bin/maint/check-merge-branch.sh` --html --xml ${PETSC_GCOV_OPTIONS} 616 617countfortranfunctions: 618 -@cd ${PETSC_DIR}/src/fortran; grep -E '^void' custom/*.c auto/*.c | \ 619 cut -d'(' -f1 | tr -s ' ' | cut -d' ' -f2 | uniq | grep -E -v "(^$$|Petsc)" | \ 620 sed "s/_$$//" | sort > /tmp/countfortranfunctions 621 622countcfunctions: 623 -@grep PETSC_EXTERN ${PETSC_DIR}/include/*.h | grep "(" | tr -s ' ' | \ 624 cut -d'(' -f1 | cut -d' ' -f3 | grep -v "\*" | tr -s '\012' | \ 625 tr 'A-Z' 'a-z' | sort | uniq > /tmp/countcfunctions 626 627difffortranfunctions: countfortranfunctions countcfunctions 628 -@echo -------------- Functions missing in the fortran interface --------------------- 629 -@${DIFF} /tmp/countcfunctions /tmp/countfortranfunctions | grep "^<" | cut -d' ' -f2 630 -@echo ----------------- Functions missing in the C interface ------------------------ 631 -@${DIFF} /tmp/countcfunctions /tmp/countfortranfunctions | grep "^>" | cut -d' ' -f2 632 -@${RM} /tmp/countcfunctions /tmp/countfortranfunctions 633 634checkbadfortranstubs: 635 -@echo "=========================================" 636 -@echo "Functions with MPI_Comm as an Argument" 637 -@echo "=========================================" 638 -@cd ${PETSC_DIR}/src/fortran/auto; grep '^void' *.c | grep 'MPI_Comm' | \ 639 tr -s ' ' | tr -s ':' ' ' |cut -d'(' -f1 | cut -d' ' -f1,3 640 -@echo "=========================================" 641 -@echo "Functions with a String as an Argument" 642 -@echo "=========================================" 643 -@cd ${PETSC_DIR}/src/fortran/auto; grep '^void' *.c | grep 'char \*' | \ 644 tr -s ' ' | tr -s ':' ' ' |cut -d'(' -f1 | cut -d' ' -f1,3 645 -@echo "=========================================" 646 -@echo "Functions with Pointers to PETSc Objects as Argument" 647 -@echo "=========================================" 648 -@cd ${PETSC_DIR}/src/fortran/auto; \ 649 _p_OBJ=`grep _p_ ${PETSC_DIR}/include/*.h | tr -s ' ' | \ 650 cut -d' ' -f 3 | tr -s '\012' | grep -v '{' | cut -d'*' -f1 | \ 651 sed "s/_p_//g" | tr -s '\012 ' ' *|' ` ; \ 652 for OBJ in $$_p_OBJ; do \ 653 grep "$$OBJ \*" *.c | tr -s ' ' | tr -s ':' ' ' | \ 654 cut -d'(' -f1 | cut -d' ' -f1,3; \ 655 done 656 657checkpackagetests: 658 -@echo "Missing package tests" 659 -@cat config/examples/*.py > configexamples; pushd config/BuildSystem/config/packages/; packages=`ls *.py | sed "s/\\.py//g"`;popd; for i in $${packages}; do j=`echo $${i} | tr '[:upper:]' '[:lower:]'`; printf $${j} ; grep -E "(with-$${j}|download-$${j})" configexamples | grep -v "=0" | wc -l ; done 660 -@echo "Missing download package tests" 661 -@cat config/examples/*.py > configexamples; pushd config/BuildSystem/config/packages/; packages=`grep -l "download " *.py | sed "s/\\.py//g"`;popd; for i in $${packages}; do j=`echo $${i} | tr '[:upper:]' '[:lower:]'`; printf $${j} ; grep -E "(download-$${j})" configexamples | grep -v "=0" | wc -l ; done 662 663check_petsc4py_rst: 664 @${RM} -f petsc4py_rst.log 665 @echo "Checking src/binding/petsc4py/DESCRIPTION.rst" 666 @rst2html src/binding/petsc4py/DESCRIPTION.rst > /dev/null 2> petsc4py_rst.log 667 @if test -s petsc4py_rst.log; then cat petsc4py_rst.log; exit 1; fi 668 669# TODO: checkTestCoverage: that makes sure every tutorial test has at least one test listed in the file, perhaps handled by gmakegentest.py 670# TODO: check for PetscBeginFunctionUser in non-example source 671# TODO: check for __ at start of #define or symbol 672# TODO: checking for missing manual pages 673# TODO: check for incorrect %d 674# TODO: check for double blank lines 675# TODO: check for ill-formed manual pages 676# TODO: check for { on line after for 677# TODO: check for } then else on following line 678# TODO: check for } else { with SETERRQ on following line or if () { with SETERRQ on following line 679 680checkbadSpelling: 681 -@x=`python3 ../bin/extract.py | aspell list | sort -u` ; 682 683updatedatafiles: 684 -@if [ -d "${HOME}/datafiles" ]; then \ 685 echo " ** Updating datafiles at ${HOME}/datafiles **"; \ 686 cd "${HOME}/datafiles" && git pull -q; fi 687 688.PHONY: info info_h all deletelibs allclean update \ 689 alletags etags etags_complete etags_noexamples etags_makefiles etags_examples etags_fexamples alldoc allmanpages \ 690 allcleanhtml countfortranfunctions \ 691 start_configure configure_petsc configure_clean matlabbin install 692