1 /* Basis Jet Tabulation 2 3 We would like to tabulate the nodal basis functions and derivatives at a set of points, usually quadrature points. We 4 follow here the derviation in http://www.math.ttu.edu/~kirby/papers/fiat-toms-2004.pdf. The nodal basis $\psi_i$ can 5 be expressed in terms of a prime basis $\phi_i$ which can be stably evaluated. In PETSc, we will use the Legendre basis 6 as a prime basis. 7 8 \psi_i = \sum_k \alpha_{ki} \phi_k 9 10 Our nodal basis is defined in terms of the dual basis $n_j$ 11 12 n_j \cdot \psi_i = \delta_{ji} 13 14 and we may act on the first equation to obtain 15 16 n_j \cdot \psi_i = \sum_k \alpha_{ki} n_j \cdot \phi_k 17 \delta_{ji} = \sum_k \alpha_{ki} V_{jk} 18 I = V \alpha 19 20 so the coefficients of the nodal basis in the prime basis are 21 22 \alpha = V^{-1} 23 24 We will define the dual basis vectors $n_j$ using a quadrature rule. 25 26 Right now, we will just use the polynomial spaces P^k. I know some elements use the space of symmetric polynomials 27 (I think Nedelec), but we will neglect this for now. Constraints in the space, e.g. Arnold-Winther elements, can 28 be implemented exactly as in FIAT using functionals $L_j$. 29 30 I will have to count the degrees correctly for the Legendre product when we are on simplices. 31 32 We will have three objects: 33 - Space, P: this just need point evaluation I think 34 - Dual Space, P'+K: This looks like a set of functionals that can act on members of P, each n is defined by a Q 35 - FEM: This keeps {P, P', Q} 36 */ 37 #include <petsc/private/petscfeimpl.h> /*I "petscfe.h" I*/ 38 #include <petscdmplex.h> 39 40 PetscBool FEcite = PETSC_FALSE; 41 const char FECitation[] = "@article{kirby2004,\n" 42 " title = {Algorithm 839: FIAT, a New Paradigm for Computing Finite Element Basis Functions},\n" 43 " journal = {ACM Transactions on Mathematical Software},\n" 44 " author = {Robert C. Kirby},\n" 45 " volume = {30},\n" 46 " number = {4},\n" 47 " pages = {502--516},\n" 48 " doi = {10.1145/1039813.1039820},\n" 49 " year = {2004}\n}\n"; 50 51 PetscClassId PETSCFE_CLASSID = 0; 52 53 PetscLogEvent PETSCFE_SetUp; 54 55 PetscFunctionList PetscFEList = NULL; 56 PetscBool PetscFERegisterAllCalled = PETSC_FALSE; 57 58 /*@C 59 PetscFERegister - Adds a new `PetscFEType` 60 61 Not Collective 62 63 Input Parameters: 64 + sname - The name of a new user-defined creation routine 65 - function - The creation routine 66 67 Example Usage: 68 .vb 69 PetscFERegister("my_fe", MyPetscFECreate); 70 .ve 71 72 Then, your PetscFE type can be chosen with the procedural interface via 73 .vb 74 PetscFECreate(MPI_Comm, PetscFE *); 75 PetscFESetType(PetscFE, "my_fe"); 76 .ve 77 or at runtime via the option 78 .vb 79 -petscfe_type my_fe 80 .ve 81 82 Level: advanced 83 84 Note: 85 `PetscFERegister()` may be called multiple times to add several user-defined `PetscFE`s 86 87 .seealso: `PetscFE`, `PetscFEType`, `PetscFERegisterAll()`, `PetscFERegisterDestroy()` 88 @*/ 89 PetscErrorCode PetscFERegister(const char sname[], PetscErrorCode (*function)(PetscFE)) 90 { 91 PetscFunctionBegin; 92 PetscCall(PetscFunctionListAdd(&PetscFEList, sname, function)); 93 PetscFunctionReturn(PETSC_SUCCESS); 94 } 95 96 /*@C 97 PetscFESetType - Builds a particular `PetscFE` 98 99 Collective 100 101 Input Parameters: 102 + fem - The `PetscFE` object 103 - name - The kind of FEM space 104 105 Options Database Key: 106 . -petscfe_type <type> - Sets the `PetscFE` type; use -help for a list of available types 107 108 Level: intermediate 109 110 .seealso: `PetscFEType`, `PetscFE`, `PetscFEGetType()`, `PetscFECreate()` 111 @*/ 112 PetscErrorCode PetscFESetType(PetscFE fem, PetscFEType name) 113 { 114 PetscErrorCode (*r)(PetscFE); 115 PetscBool match; 116 117 PetscFunctionBegin; 118 PetscValidHeaderSpecific(fem, PETSCFE_CLASSID, 1); 119 PetscCall(PetscObjectTypeCompare((PetscObject)fem, name, &match)); 120 if (match) PetscFunctionReturn(PETSC_SUCCESS); 121 122 if (!PetscFERegisterAllCalled) PetscCall(PetscFERegisterAll()); 123 PetscCall(PetscFunctionListFind(PetscFEList, name, &r)); 124 PetscCheck(r, PetscObjectComm((PetscObject)fem), PETSC_ERR_ARG_UNKNOWN_TYPE, "Unknown PetscFE type: %s", name); 125 126 PetscTryTypeMethod(fem, destroy); 127 fem->ops->destroy = NULL; 128 129 PetscCall((*r)(fem)); 130 PetscCall(PetscObjectChangeTypeName((PetscObject)fem, name)); 131 PetscFunctionReturn(PETSC_SUCCESS); 132 } 133 134 /*@C 135 PetscFEGetType - Gets the `PetscFEType` (as a string) from the `PetscFE` object. 136 137 Not Collective 138 139 Input Parameter: 140 . fem - The `PetscFE` 141 142 Output Parameter: 143 . name - The `PetscFEType` name 144 145 Level: intermediate 146 147 .seealso: `PetscFEType`, `PetscFE`, `PetscFESetType()`, `PetscFECreate()` 148 @*/ 149 PetscErrorCode PetscFEGetType(PetscFE fem, PetscFEType *name) 150 { 151 PetscFunctionBegin; 152 PetscValidHeaderSpecific(fem, PETSCFE_CLASSID, 1); 153 PetscValidPointer(name, 2); 154 if (!PetscFERegisterAllCalled) PetscCall(PetscFERegisterAll()); 155 *name = ((PetscObject)fem)->type_name; 156 PetscFunctionReturn(PETSC_SUCCESS); 157 } 158 159 /*@C 160 PetscFEViewFromOptions - View from a `PetscFE` based on values in the options database 161 162 Collective 163 164 Input Parameters: 165 + A - the `PetscFE` object 166 . obj - Optional object that provides the options prefix 167 - name - command line option name 168 169 Level: intermediate 170 171 .seealso: `PetscFE`, `PetscFEView()`, `PetscObjectViewFromOptions()`, `PetscFECreate()` 172 @*/ 173 PetscErrorCode PetscFEViewFromOptions(PetscFE A, PetscObject obj, const char name[]) 174 { 175 PetscFunctionBegin; 176 PetscValidHeaderSpecific(A, PETSCFE_CLASSID, 1); 177 PetscCall(PetscObjectViewFromOptions((PetscObject)A, obj, name)); 178 PetscFunctionReturn(PETSC_SUCCESS); 179 } 180 181 /*@C 182 PetscFEView - Views a `PetscFE` 183 184 Collective 185 186 Input Parameters: 187 + fem - the `PetscFE` object to view 188 - viewer - the viewer 189 190 Level: beginner 191 192 .seealso: `PetscFE`, `PetscViewer`, `PetscFEDestroy()`, `PetscFEViewFromOptions()` 193 @*/ 194 PetscErrorCode PetscFEView(PetscFE fem, PetscViewer viewer) 195 { 196 PetscBool iascii; 197 198 PetscFunctionBegin; 199 PetscValidHeaderSpecific(fem, PETSCFE_CLASSID, 1); 200 if (viewer) PetscValidHeaderSpecific(viewer, PETSC_VIEWER_CLASSID, 2); 201 if (!viewer) PetscCall(PetscViewerASCIIGetStdout(PetscObjectComm((PetscObject)fem), &viewer)); 202 PetscCall(PetscObjectPrintClassNamePrefixType((PetscObject)fem, viewer)); 203 PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERASCII, &iascii)); 204 PetscTryTypeMethod(fem, view, viewer); 205 PetscFunctionReturn(PETSC_SUCCESS); 206 } 207 208 /*@ 209 PetscFESetFromOptions - sets parameters in a `PetscFE` from the options database 210 211 Collective 212 213 Input Parameter: 214 . fem - the `PetscFE` object to set options for 215 216 Options Database Keys: 217 + -petscfe_num_blocks - the number of cell blocks to integrate concurrently 218 - -petscfe_num_batches - the number of cell batches to integrate serially 219 220 Level: intermediate 221 222 .seealso: `PetscFEV`, `PetscFEView()` 223 @*/ 224 PetscErrorCode PetscFESetFromOptions(PetscFE fem) 225 { 226 const char *defaultType; 227 char name[256]; 228 PetscBool flg; 229 230 PetscFunctionBegin; 231 PetscValidHeaderSpecific(fem, PETSCFE_CLASSID, 1); 232 if (!((PetscObject)fem)->type_name) { 233 defaultType = PETSCFEBASIC; 234 } else { 235 defaultType = ((PetscObject)fem)->type_name; 236 } 237 if (!PetscFERegisterAllCalled) PetscCall(PetscFERegisterAll()); 238 239 PetscObjectOptionsBegin((PetscObject)fem); 240 PetscCall(PetscOptionsFList("-petscfe_type", "Finite element space", "PetscFESetType", PetscFEList, defaultType, name, 256, &flg)); 241 if (flg) { 242 PetscCall(PetscFESetType(fem, name)); 243 } else if (!((PetscObject)fem)->type_name) { 244 PetscCall(PetscFESetType(fem, defaultType)); 245 } 246 PetscCall(PetscOptionsBoundedInt("-petscfe_num_blocks", "The number of cell blocks to integrate concurrently", "PetscSpaceSetTileSizes", fem->numBlocks, &fem->numBlocks, NULL, 1)); 247 PetscCall(PetscOptionsBoundedInt("-petscfe_num_batches", "The number of cell batches to integrate serially", "PetscSpaceSetTileSizes", fem->numBatches, &fem->numBatches, NULL, 1)); 248 PetscTryTypeMethod(fem, setfromoptions, PetscOptionsObject); 249 /* process any options handlers added with PetscObjectAddOptionsHandler() */ 250 PetscCall(PetscObjectProcessOptionsHandlers((PetscObject)fem, PetscOptionsObject)); 251 PetscOptionsEnd(); 252 PetscCall(PetscFEViewFromOptions(fem, NULL, "-petscfe_view")); 253 PetscFunctionReturn(PETSC_SUCCESS); 254 } 255 256 /*@C 257 PetscFESetUp - Construct data structures for the `PetscFE` after the `PetscFEType` has been set 258 259 Collective 260 261 Input Parameter: 262 . fem - the `PetscFE` object to setup 263 264 Level: intermediate 265 266 .seealso: `PetscFE`, `PetscFEView()`, `PetscFEDestroy()` 267 @*/ 268 PetscErrorCode PetscFESetUp(PetscFE fem) 269 { 270 PetscFunctionBegin; 271 PetscValidHeaderSpecific(fem, PETSCFE_CLASSID, 1); 272 if (fem->setupcalled) PetscFunctionReturn(PETSC_SUCCESS); 273 PetscCall(PetscLogEventBegin(PETSCFE_SetUp, fem, 0, 0, 0)); 274 fem->setupcalled = PETSC_TRUE; 275 PetscTryTypeMethod(fem, setup); 276 PetscCall(PetscLogEventEnd(PETSCFE_SetUp, fem, 0, 0, 0)); 277 PetscFunctionReturn(PETSC_SUCCESS); 278 } 279 280 /*@ 281 PetscFEDestroy - Destroys a `PetscFE` object 282 283 Collective 284 285 Input Parameter: 286 . fem - the `PetscFE` object to destroy 287 288 Level: beginner 289 290 .seealso: `PetscFE`, `PetscFEView()` 291 @*/ 292 PetscErrorCode PetscFEDestroy(PetscFE *fem) 293 { 294 PetscFunctionBegin; 295 if (!*fem) PetscFunctionReturn(PETSC_SUCCESS); 296 PetscValidHeaderSpecific((*fem), PETSCFE_CLASSID, 1); 297 298 if (--((PetscObject)(*fem))->refct > 0) { 299 *fem = NULL; 300 PetscFunctionReturn(PETSC_SUCCESS); 301 } 302 ((PetscObject)(*fem))->refct = 0; 303 304 if ((*fem)->subspaces) { 305 PetscInt dim, d; 306 307 PetscCall(PetscDualSpaceGetDimension((*fem)->dualSpace, &dim)); 308 for (d = 0; d < dim; ++d) PetscCall(PetscFEDestroy(&(*fem)->subspaces[d])); 309 } 310 PetscCall(PetscFree((*fem)->subspaces)); 311 PetscCall(PetscFree((*fem)->invV)); 312 PetscCall(PetscTabulationDestroy(&(*fem)->T)); 313 PetscCall(PetscTabulationDestroy(&(*fem)->Tf)); 314 PetscCall(PetscTabulationDestroy(&(*fem)->Tc)); 315 PetscCall(PetscSpaceDestroy(&(*fem)->basisSpace)); 316 PetscCall(PetscDualSpaceDestroy(&(*fem)->dualSpace)); 317 PetscCall(PetscQuadratureDestroy(&(*fem)->quadrature)); 318 PetscCall(PetscQuadratureDestroy(&(*fem)->faceQuadrature)); 319 #ifdef PETSC_HAVE_LIBCEED 320 PetscCallCEED(CeedBasisDestroy(&(*fem)->ceedBasis)); 321 PetscCallCEED(CeedDestroy(&(*fem)->ceed)); 322 #endif 323 324 PetscTryTypeMethod((*fem), destroy); 325 PetscCall(PetscHeaderDestroy(fem)); 326 PetscFunctionReturn(PETSC_SUCCESS); 327 } 328 329 /*@ 330 PetscFECreate - Creates an empty `PetscFE` object. The type can then be set with `PetscFESetType()`. 331 332 Collective 333 334 Input Parameter: 335 . comm - The communicator for the `PetscFE` object 336 337 Output Parameter: 338 . fem - The `PetscFE` object 339 340 Level: beginner 341 342 .seealso: `PetscFE`, `PetscFEType`, `PetscFESetType()`, `PetscFECreateDefault()`, `PETSCFEGALERKIN` 343 @*/ 344 PetscErrorCode PetscFECreate(MPI_Comm comm, PetscFE *fem) 345 { 346 PetscFE f; 347 348 PetscFunctionBegin; 349 PetscValidPointer(fem, 2); 350 PetscCall(PetscCitationsRegister(FECitation, &FEcite)); 351 *fem = NULL; 352 PetscCall(PetscFEInitializePackage()); 353 354 PetscCall(PetscHeaderCreate(f, PETSCFE_CLASSID, "PetscFE", "Finite Element", "PetscFE", comm, PetscFEDestroy, PetscFEView)); 355 356 f->basisSpace = NULL; 357 f->dualSpace = NULL; 358 f->numComponents = 1; 359 f->subspaces = NULL; 360 f->invV = NULL; 361 f->T = NULL; 362 f->Tf = NULL; 363 f->Tc = NULL; 364 PetscCall(PetscArrayzero(&f->quadrature, 1)); 365 PetscCall(PetscArrayzero(&f->faceQuadrature, 1)); 366 f->blockSize = 0; 367 f->numBlocks = 1; 368 f->batchSize = 0; 369 f->numBatches = 1; 370 371 *fem = f; 372 PetscFunctionReturn(PETSC_SUCCESS); 373 } 374 375 /*@ 376 PetscFEGetSpatialDimension - Returns the spatial dimension of the element 377 378 Not Collective 379 380 Input Parameter: 381 . fem - The `PetscFE` object 382 383 Output Parameter: 384 . dim - The spatial dimension 385 386 Level: intermediate 387 388 .seealso: `PetscFE`, `PetscFECreate()` 389 @*/ 390 PetscErrorCode PetscFEGetSpatialDimension(PetscFE fem, PetscInt *dim) 391 { 392 DM dm; 393 394 PetscFunctionBegin; 395 PetscValidHeaderSpecific(fem, PETSCFE_CLASSID, 1); 396 PetscValidIntPointer(dim, 2); 397 PetscCall(PetscDualSpaceGetDM(fem->dualSpace, &dm)); 398 PetscCall(DMGetDimension(dm, dim)); 399 PetscFunctionReturn(PETSC_SUCCESS); 400 } 401 402 /*@ 403 PetscFESetNumComponents - Sets the number of field components in the element 404 405 Not Collective 406 407 Input Parameters: 408 + fem - The `PetscFE` object 409 - comp - The number of field components 410 411 Level: intermediate 412 413 .seealso: `PetscFE`, `PetscFECreate()`, `PetscFEGetSpatialDimension()`, `PetscFEGetNumComponents()` 414 @*/ 415 PetscErrorCode PetscFESetNumComponents(PetscFE fem, PetscInt comp) 416 { 417 PetscFunctionBegin; 418 PetscValidHeaderSpecific(fem, PETSCFE_CLASSID, 1); 419 fem->numComponents = comp; 420 PetscFunctionReturn(PETSC_SUCCESS); 421 } 422 423 /*@ 424 PetscFEGetNumComponents - Returns the number of components in the element 425 426 Not Collective 427 428 Input Parameter: 429 . fem - The `PetscFE` object 430 431 Output Parameter: 432 . comp - The number of field components 433 434 Level: intermediate 435 436 .seealso: `PetscFE`, `PetscFECreate()`, `PetscFEGetSpatialDimension()`, `PetscFEGetNumComponents()` 437 @*/ 438 PetscErrorCode PetscFEGetNumComponents(PetscFE fem, PetscInt *comp) 439 { 440 PetscFunctionBegin; 441 PetscValidHeaderSpecific(fem, PETSCFE_CLASSID, 1); 442 PetscValidIntPointer(comp, 2); 443 *comp = fem->numComponents; 444 PetscFunctionReturn(PETSC_SUCCESS); 445 } 446 447 /*@ 448 PetscFESetTileSizes - Sets the tile sizes for evaluation 449 450 Not Collective 451 452 Input Parameters: 453 + fem - The `PetscFE` object 454 . blockSize - The number of elements in a block 455 . numBlocks - The number of blocks in a batch 456 . batchSize - The number of elements in a batch 457 - numBatches - The number of batches in a chunk 458 459 Level: intermediate 460 461 .seealso: `PetscFE`, `PetscFECreate()`, `PetscFEGetTileSizes()` 462 @*/ 463 PetscErrorCode PetscFESetTileSizes(PetscFE fem, PetscInt blockSize, PetscInt numBlocks, PetscInt batchSize, PetscInt numBatches) 464 { 465 PetscFunctionBegin; 466 PetscValidHeaderSpecific(fem, PETSCFE_CLASSID, 1); 467 fem->blockSize = blockSize; 468 fem->numBlocks = numBlocks; 469 fem->batchSize = batchSize; 470 fem->numBatches = numBatches; 471 PetscFunctionReturn(PETSC_SUCCESS); 472 } 473 474 /*@ 475 PetscFEGetTileSizes - Returns the tile sizes for evaluation 476 477 Not Collective 478 479 Input Parameter: 480 . fem - The `PetscFE` object 481 482 Output Parameters: 483 + blockSize - The number of elements in a block 484 . numBlocks - The number of blocks in a batch 485 . batchSize - The number of elements in a batch 486 - numBatches - The number of batches in a chunk 487 488 Level: intermediate 489 490 .seealso: `PetscFE`, `PetscFECreate()`, `PetscFESetTileSizes()` 491 @*/ 492 PetscErrorCode PetscFEGetTileSizes(PetscFE fem, PetscInt *blockSize, PetscInt *numBlocks, PetscInt *batchSize, PetscInt *numBatches) 493 { 494 PetscFunctionBegin; 495 PetscValidHeaderSpecific(fem, PETSCFE_CLASSID, 1); 496 if (blockSize) PetscValidIntPointer(blockSize, 2); 497 if (numBlocks) PetscValidIntPointer(numBlocks, 3); 498 if (batchSize) PetscValidIntPointer(batchSize, 4); 499 if (numBatches) PetscValidIntPointer(numBatches, 5); 500 if (blockSize) *blockSize = fem->blockSize; 501 if (numBlocks) *numBlocks = fem->numBlocks; 502 if (batchSize) *batchSize = fem->batchSize; 503 if (numBatches) *numBatches = fem->numBatches; 504 PetscFunctionReturn(PETSC_SUCCESS); 505 } 506 507 /*@ 508 PetscFEGetBasisSpace - Returns the `PetscSpace` used for the approximation of the solution for the `PetscFE` 509 510 Not Collective 511 512 Input Parameter: 513 . fem - The `PetscFE` object 514 515 Output Parameter: 516 . sp - The `PetscSpace` object 517 518 Level: intermediate 519 520 .seealso: `PetscFE`, `PetscSpace`, `PetscFECreate()` 521 @*/ 522 PetscErrorCode PetscFEGetBasisSpace(PetscFE fem, PetscSpace *sp) 523 { 524 PetscFunctionBegin; 525 PetscValidHeaderSpecific(fem, PETSCFE_CLASSID, 1); 526 PetscValidPointer(sp, 2); 527 *sp = fem->basisSpace; 528 PetscFunctionReturn(PETSC_SUCCESS); 529 } 530 531 /*@ 532 PetscFESetBasisSpace - Sets the `PetscSpace` used for the approximation of the solution 533 534 Not Collective 535 536 Input Parameters: 537 + fem - The `PetscFE` object 538 - sp - The `PetscSpace` object 539 540 Level: intermediate 541 542 Developer Notes: 543 There is `PetscFESetBasisSpace()` but the `PetscFESetDualSpace()`, likely the Basis is unneeded in the function name 544 545 .seealso: `PetscFE`, `PetscSpace`, `PetscDualSpace`, `PetscFECreate()`, `PetscFESetDualSpace()` 546 @*/ 547 PetscErrorCode PetscFESetBasisSpace(PetscFE fem, PetscSpace sp) 548 { 549 PetscFunctionBegin; 550 PetscValidHeaderSpecific(fem, PETSCFE_CLASSID, 1); 551 PetscValidHeaderSpecific(sp, PETSCSPACE_CLASSID, 2); 552 PetscCall(PetscSpaceDestroy(&fem->basisSpace)); 553 fem->basisSpace = sp; 554 PetscCall(PetscObjectReference((PetscObject)fem->basisSpace)); 555 PetscFunctionReturn(PETSC_SUCCESS); 556 } 557 558 /*@ 559 PetscFEGetDualSpace - Returns the `PetscDualSpace` used to define the inner product for a `PetscFE` 560 561 Not Collective 562 563 Input Parameter: 564 . fem - The `PetscFE` object 565 566 Output Parameter: 567 . sp - The `PetscDualSpace` object 568 569 Level: intermediate 570 571 .seealso: `PetscFE`, `PetscSpace`, `PetscDualSpace`, `PetscFECreate()` 572 @*/ 573 PetscErrorCode PetscFEGetDualSpace(PetscFE fem, PetscDualSpace *sp) 574 { 575 PetscFunctionBegin; 576 PetscValidHeaderSpecific(fem, PETSCFE_CLASSID, 1); 577 PetscValidPointer(sp, 2); 578 *sp = fem->dualSpace; 579 PetscFunctionReturn(PETSC_SUCCESS); 580 } 581 582 /*@ 583 PetscFESetDualSpace - Sets the `PetscDualSpace` used to define the inner product 584 585 Not Collective 586 587 Input Parameters: 588 + fem - The `PetscFE` object 589 - sp - The `PetscDualSpace` object 590 591 Level: intermediate 592 593 .seealso: `PetscFE`, `PetscSpace`, `PetscDualSpace`, `PetscFECreate()`, `PetscFESetBasisSpace()` 594 @*/ 595 PetscErrorCode PetscFESetDualSpace(PetscFE fem, PetscDualSpace sp) 596 { 597 PetscFunctionBegin; 598 PetscValidHeaderSpecific(fem, PETSCFE_CLASSID, 1); 599 PetscValidHeaderSpecific(sp, PETSCDUALSPACE_CLASSID, 2); 600 PetscCall(PetscDualSpaceDestroy(&fem->dualSpace)); 601 fem->dualSpace = sp; 602 PetscCall(PetscObjectReference((PetscObject)fem->dualSpace)); 603 PetscFunctionReturn(PETSC_SUCCESS); 604 } 605 606 /*@ 607 PetscFEGetQuadrature - Returns the `PetscQuadrature` used to calculate inner products 608 609 Not Collective 610 611 Input Parameter: 612 . fem - The `PetscFE` object 613 614 Output Parameter: 615 . q - The `PetscQuadrature` object 616 617 Level: intermediate 618 619 .seealso: `PetscFE`, `PetscSpace`, `PetscDualSpace`, `PetscQuadrature`, `PetscFECreate()` 620 @*/ 621 PetscErrorCode PetscFEGetQuadrature(PetscFE fem, PetscQuadrature *q) 622 { 623 PetscFunctionBegin; 624 PetscValidHeaderSpecific(fem, PETSCFE_CLASSID, 1); 625 PetscValidPointer(q, 2); 626 *q = fem->quadrature; 627 PetscFunctionReturn(PETSC_SUCCESS); 628 } 629 630 /*@ 631 PetscFESetQuadrature - Sets the `PetscQuadrature` used to calculate inner products 632 633 Not Collective 634 635 Input Parameters: 636 + fem - The `PetscFE` object 637 - q - The `PetscQuadrature` object 638 639 Level: intermediate 640 641 .seealso: `PetscFE`, `PetscSpace`, `PetscDualSpace`, `PetscQuadrature`, `PetscFECreate()`, `PetscFEGetFaceQuadrature()` 642 @*/ 643 PetscErrorCode PetscFESetQuadrature(PetscFE fem, PetscQuadrature q) 644 { 645 PetscInt Nc, qNc; 646 647 PetscFunctionBegin; 648 PetscValidHeaderSpecific(fem, PETSCFE_CLASSID, 1); 649 if (q == fem->quadrature) PetscFunctionReturn(PETSC_SUCCESS); 650 PetscCall(PetscFEGetNumComponents(fem, &Nc)); 651 PetscCall(PetscQuadratureGetNumComponents(q, &qNc)); 652 PetscCheck(!(qNc != 1) || !(Nc != qNc), PetscObjectComm((PetscObject)fem), PETSC_ERR_ARG_SIZ, "FE components %" PetscInt_FMT " != Quadrature components %" PetscInt_FMT " and non-scalar quadrature", Nc, qNc); 653 PetscCall(PetscTabulationDestroy(&fem->T)); 654 PetscCall(PetscTabulationDestroy(&fem->Tc)); 655 PetscCall(PetscObjectReference((PetscObject)q)); 656 PetscCall(PetscQuadratureDestroy(&fem->quadrature)); 657 fem->quadrature = q; 658 PetscFunctionReturn(PETSC_SUCCESS); 659 } 660 661 /*@ 662 PetscFEGetFaceQuadrature - Returns the `PetscQuadrature` used to calculate inner products on faces 663 664 Not Collective 665 666 Input Parameter: 667 . fem - The `PetscFE` object 668 669 Output Parameter: 670 . q - The `PetscQuadrature` object 671 672 Level: intermediate 673 674 Developer Notes: 675 There is a special face quadrature but not edge, likely this API would benefit from a refactorization 676 677 .seealso: `PetscFE`, `PetscSpace`, `PetscDualSpace`, `PetscQuadrature`, `PetscFECreate()`, `PetscFESetQuadrature()`, `PetscFESetFaceQuadrature()` 678 @*/ 679 PetscErrorCode PetscFEGetFaceQuadrature(PetscFE fem, PetscQuadrature *q) 680 { 681 PetscFunctionBegin; 682 PetscValidHeaderSpecific(fem, PETSCFE_CLASSID, 1); 683 PetscValidPointer(q, 2); 684 *q = fem->faceQuadrature; 685 PetscFunctionReturn(PETSC_SUCCESS); 686 } 687 688 /*@ 689 PetscFESetFaceQuadrature - Sets the `PetscQuadrature` used to calculate inner products on faces 690 691 Not Collective 692 693 Input Parameters: 694 + fem - The `PetscFE` object 695 - q - The `PetscQuadrature` object 696 697 Level: intermediate 698 699 .seealso: `PetscFE`, `PetscSpace`, `PetscDualSpace`, `PetscQuadrature`, `PetscFECreate()`, `PetscFESetQuadrature()`, `PetscFESetFaceQuadrature()` 700 @*/ 701 PetscErrorCode PetscFESetFaceQuadrature(PetscFE fem, PetscQuadrature q) 702 { 703 PetscInt Nc, qNc; 704 705 PetscFunctionBegin; 706 PetscValidHeaderSpecific(fem, PETSCFE_CLASSID, 1); 707 if (q == fem->faceQuadrature) PetscFunctionReturn(PETSC_SUCCESS); 708 PetscCall(PetscFEGetNumComponents(fem, &Nc)); 709 PetscCall(PetscQuadratureGetNumComponents(q, &qNc)); 710 PetscCheck(!(qNc != 1) || !(Nc != qNc), PetscObjectComm((PetscObject)fem), PETSC_ERR_ARG_SIZ, "FE components %" PetscInt_FMT " != Quadrature components %" PetscInt_FMT " and non-scalar quadrature", Nc, qNc); 711 PetscCall(PetscTabulationDestroy(&fem->Tf)); 712 PetscCall(PetscObjectReference((PetscObject)q)); 713 PetscCall(PetscQuadratureDestroy(&fem->faceQuadrature)); 714 fem->faceQuadrature = q; 715 PetscFunctionReturn(PETSC_SUCCESS); 716 } 717 718 /*@ 719 PetscFECopyQuadrature - Copy both volumetric and surface quadrature to a new `PetscFE` 720 721 Not Collective 722 723 Input Parameters: 724 + sfe - The `PetscFE` source for the quadratures 725 - tfe - The `PetscFE` target for the quadratures 726 727 Level: intermediate 728 729 .seealso: `PetscFE`, `PetscSpace`, `PetscDualSpace`, `PetscQuadrature`, `PetscFECreate()`, `PetscFESetQuadrature()`, `PetscFESetFaceQuadrature()` 730 @*/ 731 PetscErrorCode PetscFECopyQuadrature(PetscFE sfe, PetscFE tfe) 732 { 733 PetscQuadrature q; 734 735 PetscFunctionBegin; 736 PetscValidHeaderSpecific(sfe, PETSCFE_CLASSID, 1); 737 PetscValidHeaderSpecific(tfe, PETSCFE_CLASSID, 2); 738 PetscCall(PetscFEGetQuadrature(sfe, &q)); 739 PetscCall(PetscFESetQuadrature(tfe, q)); 740 PetscCall(PetscFEGetFaceQuadrature(sfe, &q)); 741 PetscCall(PetscFESetFaceQuadrature(tfe, q)); 742 PetscFunctionReturn(PETSC_SUCCESS); 743 } 744 745 /*@C 746 PetscFEGetNumDof - Returns the number of dofs (dual basis vectors) associated to mesh points on the reference cell of a given dimension 747 748 Not Collective 749 750 Input Parameter: 751 . fem - The `PetscFE` object 752 753 Output Parameter: 754 . numDof - Array with the number of dofs per dimension 755 756 Level: intermediate 757 758 .seealso: `PetscFE`, `PetscSpace`, `PetscDualSpace`, `PetscFECreate()` 759 @*/ 760 PetscErrorCode PetscFEGetNumDof(PetscFE fem, const PetscInt **numDof) 761 { 762 PetscFunctionBegin; 763 PetscValidHeaderSpecific(fem, PETSCFE_CLASSID, 1); 764 PetscValidPointer(numDof, 2); 765 PetscCall(PetscDualSpaceGetNumDof(fem->dualSpace, numDof)); 766 PetscFunctionReturn(PETSC_SUCCESS); 767 } 768 769 /*@C 770 PetscFEGetCellTabulation - Returns the tabulation of the basis functions at the quadrature points on the reference cell 771 772 Not Collective 773 774 Input Parameters: 775 + fem - The `PetscFE` object 776 - k - The highest derivative we need to tabulate, very often 1 777 778 Output Parameter: 779 . T - The basis function values and derivatives at quadrature points 780 781 Level: intermediate 782 783 Note: 784 .vb 785 T->T[0] = B[(p*pdim + i)*Nc + c] is the value at point p for basis function i and component c 786 T->T[1] = D[((p*pdim + i)*Nc + c)*dim + d] is the derivative value at point p for basis function i, component c, in direction d 787 T->T[2] = H[(((p*pdim + i)*Nc + c)*dim + d)*dim + e] is the value at point p for basis function i, component c, in directions d and e 788 .ve 789 790 .seealso: `PetscFE`, `PetscSpace`, `PetscDualSpace`, `PetscTabulation`, `PetscFECreateTabulation()`, `PetscTabulationDestroy()` 791 @*/ 792 PetscErrorCode PetscFEGetCellTabulation(PetscFE fem, PetscInt k, PetscTabulation *T) 793 { 794 PetscInt npoints; 795 const PetscReal *points; 796 797 PetscFunctionBegin; 798 PetscValidHeaderSpecific(fem, PETSCFE_CLASSID, 1); 799 PetscValidPointer(T, 3); 800 PetscCall(PetscQuadratureGetData(fem->quadrature, NULL, NULL, &npoints, &points, NULL)); 801 if (!fem->T) PetscCall(PetscFECreateTabulation(fem, 1, npoints, points, k, &fem->T)); 802 PetscCheck(!fem->T || k <= fem->T->K || (!fem->T->cdim && !fem->T->K), PetscObjectComm((PetscObject)fem), PETSC_ERR_ARG_OUTOFRANGE, "Requested %" PetscInt_FMT " derivatives, but only tabulated %" PetscInt_FMT, k, fem->T->K); 803 *T = fem->T; 804 PetscFunctionReturn(PETSC_SUCCESS); 805 } 806 807 /*@C 808 PetscFEGetFaceTabulation - Returns the tabulation of the basis functions at the face quadrature points for each face of the reference cell 809 810 Not Collective 811 812 Input Parameters: 813 + fem - The `PetscFE` object 814 - k - The highest derivative we need to tabulate, very often 1 815 816 Output Parameter: 817 . Tf - The basis function values and derivatives at face quadrature points 818 819 Level: intermediate 820 821 Note: 822 .vb 823 T->T[0] = Bf[((f*Nq + q)*pdim + i)*Nc + c] is the value at point f,q for basis function i and component c 824 T->T[1] = Df[(((f*Nq + q)*pdim + i)*Nc + c)*dim + d] is the derivative value at point f,q for basis function i, component c, in direction d 825 T->T[2] = Hf[((((f*Nq + q)*pdim + i)*Nc + c)*dim + d)*dim + e] is the value at point f,q for basis function i, component c, in directions d and e 826 .ve 827 828 .seealso: `PetscFE`, `PetscSpace`, `PetscDualSpace`, `PetscTabulation`, `PetscFEGetCellTabulation()`, `PetscFECreateTabulation()`, `PetscTabulationDestroy()` 829 @*/ 830 PetscErrorCode PetscFEGetFaceTabulation(PetscFE fem, PetscInt k, PetscTabulation *Tf) 831 { 832 PetscFunctionBegin; 833 PetscValidHeaderSpecific(fem, PETSCFE_CLASSID, 1); 834 PetscValidPointer(Tf, 3); 835 if (!fem->Tf) { 836 const PetscReal xi0[3] = {-1., -1., -1.}; 837 PetscReal v0[3], J[9], detJ; 838 PetscQuadrature fq; 839 PetscDualSpace sp; 840 DM dm; 841 const PetscInt *faces; 842 PetscInt dim, numFaces, f, npoints, q; 843 const PetscReal *points; 844 PetscReal *facePoints; 845 846 PetscCall(PetscFEGetDualSpace(fem, &sp)); 847 PetscCall(PetscDualSpaceGetDM(sp, &dm)); 848 PetscCall(DMGetDimension(dm, &dim)); 849 PetscCall(DMPlexGetConeSize(dm, 0, &numFaces)); 850 PetscCall(DMPlexGetCone(dm, 0, &faces)); 851 PetscCall(PetscFEGetFaceQuadrature(fem, &fq)); 852 if (fq) { 853 PetscCall(PetscQuadratureGetData(fq, NULL, NULL, &npoints, &points, NULL)); 854 PetscCall(PetscMalloc1(numFaces * npoints * dim, &facePoints)); 855 for (f = 0; f < numFaces; ++f) { 856 PetscCall(DMPlexComputeCellGeometryFEM(dm, faces[f], NULL, v0, J, NULL, &detJ)); 857 for (q = 0; q < npoints; ++q) CoordinatesRefToReal(dim, dim - 1, xi0, v0, J, &points[q * (dim - 1)], &facePoints[(f * npoints + q) * dim]); 858 } 859 PetscCall(PetscFECreateTabulation(fem, numFaces, npoints, facePoints, k, &fem->Tf)); 860 PetscCall(PetscFree(facePoints)); 861 } 862 } 863 PetscCheck(!fem->Tf || k <= fem->Tf->K, PetscObjectComm((PetscObject)fem), PETSC_ERR_ARG_OUTOFRANGE, "Requested %" PetscInt_FMT " derivatives, but only tabulated %" PetscInt_FMT, k, fem->Tf->K); 864 *Tf = fem->Tf; 865 PetscFunctionReturn(PETSC_SUCCESS); 866 } 867 868 /*@C 869 PetscFEGetFaceCentroidTabulation - Returns the tabulation of the basis functions at the face centroid points 870 871 Not Collective 872 873 Input Parameter: 874 . fem - The `PetscFE` object 875 876 Output Parameter: 877 . Tc - The basis function values at face centroid points 878 879 Level: intermediate 880 881 Note: 882 .vb 883 T->T[0] = Bf[(f*pdim + i)*Nc + c] is the value at point f for basis function i and component c 884 .ve 885 886 .seealso: `PetscFE`, `PetscSpace`, `PetscDualSpace`, `PetscTabulation`, `PetscFEGetFaceTabulation()`, `PetscFEGetCellTabulation()`, `PetscFECreateTabulation()`, `PetscTabulationDestroy()` 887 @*/ 888 PetscErrorCode PetscFEGetFaceCentroidTabulation(PetscFE fem, PetscTabulation *Tc) 889 { 890 PetscFunctionBegin; 891 PetscValidHeaderSpecific(fem, PETSCFE_CLASSID, 1); 892 PetscValidPointer(Tc, 2); 893 if (!fem->Tc) { 894 PetscDualSpace sp; 895 DM dm; 896 const PetscInt *cone; 897 PetscReal *centroids; 898 PetscInt dim, numFaces, f; 899 900 PetscCall(PetscFEGetDualSpace(fem, &sp)); 901 PetscCall(PetscDualSpaceGetDM(sp, &dm)); 902 PetscCall(DMGetDimension(dm, &dim)); 903 PetscCall(DMPlexGetConeSize(dm, 0, &numFaces)); 904 PetscCall(DMPlexGetCone(dm, 0, &cone)); 905 PetscCall(PetscMalloc1(numFaces * dim, ¢roids)); 906 for (f = 0; f < numFaces; ++f) PetscCall(DMPlexComputeCellGeometryFVM(dm, cone[f], NULL, ¢roids[f * dim], NULL)); 907 PetscCall(PetscFECreateTabulation(fem, 1, numFaces, centroids, 0, &fem->Tc)); 908 PetscCall(PetscFree(centroids)); 909 } 910 *Tc = fem->Tc; 911 PetscFunctionReturn(PETSC_SUCCESS); 912 } 913 914 /*@C 915 PetscFECreateTabulation - Tabulates the basis functions, and perhaps derivatives, at the points provided. 916 917 Not Collective 918 919 Input Parameters: 920 + fem - The `PetscFE` object 921 . nrepl - The number of replicas 922 . npoints - The number of tabulation points in a replica 923 . points - The tabulation point coordinates 924 - K - The number of derivatives calculated 925 926 Output Parameter: 927 . T - The basis function values and derivatives at tabulation points 928 929 Level: intermediate 930 931 Note: 932 .vb 933 T->T[0] = B[(p*pdim + i)*Nc + c] is the value at point p for basis function i and component c 934 T->T[1] = D[((p*pdim + i)*Nc + c)*dim + d] is the derivative value at point p for basis function i, component c, in direction d 935 T->T[2] = H[(((p*pdim + i)*Nc + c)*dim + d)*dim + e] is the value at point p for basis function i, component c, in directions d and e 936 937 .seealso: `PetscTabulation`, `PetscFEGetCellTabulation()`, `PetscTabulationDestroy()` 938 @*/ 939 PetscErrorCode PetscFECreateTabulation(PetscFE fem, PetscInt nrepl, PetscInt npoints, const PetscReal points[], PetscInt K, PetscTabulation *T) 940 { 941 DM dm; 942 PetscDualSpace Q; 943 PetscInt Nb; /* Dimension of FE space P */ 944 PetscInt Nc; /* Field components */ 945 PetscInt cdim; /* Reference coordinate dimension */ 946 PetscInt k; 947 948 PetscFunctionBegin; 949 if (!npoints || !fem->dualSpace || K < 0) { 950 *T = NULL; 951 PetscFunctionReturn(PETSC_SUCCESS); 952 } 953 PetscValidHeaderSpecific(fem, PETSCFE_CLASSID, 1); 954 PetscValidRealPointer(points, 4); 955 PetscValidPointer(T, 6); 956 PetscCall(PetscFEGetDualSpace(fem, &Q)); 957 PetscCall(PetscDualSpaceGetDM(Q, &dm)); 958 PetscCall(DMGetDimension(dm, &cdim)); 959 PetscCall(PetscDualSpaceGetDimension(Q, &Nb)); 960 PetscCall(PetscFEGetNumComponents(fem, &Nc)); 961 PetscCall(PetscMalloc1(1, T)); 962 (*T)->K = !cdim ? 0 : K; 963 (*T)->Nr = nrepl; 964 (*T)->Np = npoints; 965 (*T)->Nb = Nb; 966 (*T)->Nc = Nc; 967 (*T)->cdim = cdim; 968 PetscCall(PetscMalloc1((*T)->K + 1, &(*T)->T)); 969 for (k = 0; k <= (*T)->K; ++k) PetscCall(PetscMalloc1(nrepl * npoints * Nb * Nc * PetscPowInt(cdim, k), &(*T)->T[k])); 970 PetscUseTypeMethod(fem, createtabulation, nrepl * npoints, points, K, *T); 971 PetscFunctionReturn(PETSC_SUCCESS); 972 } 973 974 /*@C 975 PetscFEComputeTabulation - Tabulates the basis functions, and perhaps derivatives, at the points provided. 976 977 Not Collective 978 979 Input Parameters: 980 + fem - The `PetscFE` object 981 . npoints - The number of tabulation points 982 . points - The tabulation point coordinates 983 . K - The number of derivatives calculated 984 - T - An existing tabulation object with enough allocated space 985 986 Output Parameter: 987 . T - The basis function values and derivatives at tabulation points 988 989 Level: intermediate 990 991 Note: 992 .vb 993 T->T[0] = B[(p*pdim + i)*Nc + c] is the value at point p for basis function i and component c 994 T->T[1] = D[((p*pdim + i)*Nc + c)*dim + d] is the derivative value at point p for basis function i, component c, in direction d 995 T->T[2] = H[(((p*pdim + i)*Nc + c)*dim + d)*dim + e] is the value at point p for basis function i, component c, in directions d and e 996 .ve 997 998 .seealso: `PetscTabulation`, `PetscFEGetCellTabulation()`, `PetscTabulationDestroy()` 999 @*/ 1000 PetscErrorCode PetscFEComputeTabulation(PetscFE fem, PetscInt npoints, const PetscReal points[], PetscInt K, PetscTabulation T) 1001 { 1002 PetscFunctionBeginHot; 1003 if (!npoints || !fem->dualSpace || K < 0) PetscFunctionReturn(PETSC_SUCCESS); 1004 PetscValidHeaderSpecific(fem, PETSCFE_CLASSID, 1); 1005 PetscValidRealPointer(points, 3); 1006 PetscValidPointer(T, 5); 1007 if (PetscDefined(USE_DEBUG)) { 1008 DM dm; 1009 PetscDualSpace Q; 1010 PetscInt Nb; /* Dimension of FE space P */ 1011 PetscInt Nc; /* Field components */ 1012 PetscInt cdim; /* Reference coordinate dimension */ 1013 1014 PetscCall(PetscFEGetDualSpace(fem, &Q)); 1015 PetscCall(PetscDualSpaceGetDM(Q, &dm)); 1016 PetscCall(DMGetDimension(dm, &cdim)); 1017 PetscCall(PetscDualSpaceGetDimension(Q, &Nb)); 1018 PetscCall(PetscFEGetNumComponents(fem, &Nc)); 1019 PetscCheck(T->K == (!cdim ? 0 : K), PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Tabulation K %" PetscInt_FMT " must match requested K %" PetscInt_FMT, T->K, !cdim ? 0 : K); 1020 PetscCheck(T->Nb == Nb, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Tabulation Nb %" PetscInt_FMT " must match requested Nb %" PetscInt_FMT, T->Nb, Nb); 1021 PetscCheck(T->Nc == Nc, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Tabulation Nc %" PetscInt_FMT " must match requested Nc %" PetscInt_FMT, T->Nc, Nc); 1022 PetscCheck(T->cdim == cdim, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Tabulation cdim %" PetscInt_FMT " must match requested cdim %" PetscInt_FMT, T->cdim, cdim); 1023 } 1024 T->Nr = 1; 1025 T->Np = npoints; 1026 PetscUseTypeMethod(fem, createtabulation, npoints, points, K, T); 1027 PetscFunctionReturn(PETSC_SUCCESS); 1028 } 1029 1030 /*@C 1031 PetscTabulationDestroy - Frees memory from the associated tabulation. 1032 1033 Not Collective 1034 1035 Input Parameter: 1036 . T - The tabulation 1037 1038 Level: intermediate 1039 1040 .seealso: `PetscTabulation`, `PetscFECreateTabulation()`, `PetscFEGetCellTabulation()` 1041 @*/ 1042 PetscErrorCode PetscTabulationDestroy(PetscTabulation *T) 1043 { 1044 PetscInt k; 1045 1046 PetscFunctionBegin; 1047 PetscValidPointer(T, 1); 1048 if (!T || !(*T)) PetscFunctionReturn(PETSC_SUCCESS); 1049 for (k = 0; k <= (*T)->K; ++k) PetscCall(PetscFree((*T)->T[k])); 1050 PetscCall(PetscFree((*T)->T)); 1051 PetscCall(PetscFree(*T)); 1052 *T = NULL; 1053 PetscFunctionReturn(PETSC_SUCCESS); 1054 } 1055 1056 PETSC_EXTERN PetscErrorCode PetscFECreatePointTrace(PetscFE fe, PetscInt refPoint, PetscFE *trFE) 1057 { 1058 PetscSpace bsp, bsubsp; 1059 PetscDualSpace dsp, dsubsp; 1060 PetscInt dim, depth, numComp, i, j, coneSize, order; 1061 PetscFEType type; 1062 DM dm; 1063 DMLabel label; 1064 PetscReal *xi, *v, *J, detJ; 1065 const char *name; 1066 PetscQuadrature origin, fullQuad, subQuad; 1067 1068 PetscFunctionBegin; 1069 PetscValidHeaderSpecific(fe, PETSCFE_CLASSID, 1); 1070 PetscValidPointer(trFE, 3); 1071 PetscCall(PetscFEGetBasisSpace(fe, &bsp)); 1072 PetscCall(PetscFEGetDualSpace(fe, &dsp)); 1073 PetscCall(PetscDualSpaceGetDM(dsp, &dm)); 1074 PetscCall(DMGetDimension(dm, &dim)); 1075 PetscCall(DMPlexGetDepthLabel(dm, &label)); 1076 PetscCall(DMLabelGetValue(label, refPoint, &depth)); 1077 PetscCall(PetscCalloc1(depth, &xi)); 1078 PetscCall(PetscMalloc1(dim, &v)); 1079 PetscCall(PetscMalloc1(dim * dim, &J)); 1080 for (i = 0; i < depth; i++) xi[i] = 0.; 1081 PetscCall(PetscQuadratureCreate(PETSC_COMM_SELF, &origin)); 1082 PetscCall(PetscQuadratureSetData(origin, depth, 0, 1, xi, NULL)); 1083 PetscCall(DMPlexComputeCellGeometryFEM(dm, refPoint, origin, v, J, NULL, &detJ)); 1084 /* CellGeometryFEM computes the expanded Jacobian, we want the true jacobian */ 1085 for (i = 1; i < dim; i++) { 1086 for (j = 0; j < depth; j++) J[i * depth + j] = J[i * dim + j]; 1087 } 1088 PetscCall(PetscQuadratureDestroy(&origin)); 1089 PetscCall(PetscDualSpaceGetPointSubspace(dsp, refPoint, &dsubsp)); 1090 PetscCall(PetscSpaceCreateSubspace(bsp, dsubsp, v, J, NULL, NULL, PETSC_OWN_POINTER, &bsubsp)); 1091 PetscCall(PetscSpaceSetUp(bsubsp)); 1092 PetscCall(PetscFECreate(PetscObjectComm((PetscObject)fe), trFE)); 1093 PetscCall(PetscFEGetType(fe, &type)); 1094 PetscCall(PetscFESetType(*trFE, type)); 1095 PetscCall(PetscFEGetNumComponents(fe, &numComp)); 1096 PetscCall(PetscFESetNumComponents(*trFE, numComp)); 1097 PetscCall(PetscFESetBasisSpace(*trFE, bsubsp)); 1098 PetscCall(PetscFESetDualSpace(*trFE, dsubsp)); 1099 PetscCall(PetscObjectGetName((PetscObject)fe, &name)); 1100 if (name) PetscCall(PetscFESetName(*trFE, name)); 1101 PetscCall(PetscFEGetQuadrature(fe, &fullQuad)); 1102 PetscCall(PetscQuadratureGetOrder(fullQuad, &order)); 1103 PetscCall(DMPlexGetConeSize(dm, refPoint, &coneSize)); 1104 if (coneSize == 2 * depth) PetscCall(PetscDTGaussTensorQuadrature(depth, 1, (order + 2) / 2, -1., 1., &subQuad)); 1105 else PetscCall(PetscDTSimplexQuadrature(depth, order, PETSCDTSIMPLEXQUAD_DEFAULT, &subQuad)); 1106 PetscCall(PetscFESetQuadrature(*trFE, subQuad)); 1107 PetscCall(PetscFESetUp(*trFE)); 1108 PetscCall(PetscQuadratureDestroy(&subQuad)); 1109 PetscCall(PetscSpaceDestroy(&bsubsp)); 1110 PetscFunctionReturn(PETSC_SUCCESS); 1111 } 1112 1113 PetscErrorCode PetscFECreateHeightTrace(PetscFE fe, PetscInt height, PetscFE *trFE) 1114 { 1115 PetscInt hStart, hEnd; 1116 PetscDualSpace dsp; 1117 DM dm; 1118 1119 PetscFunctionBegin; 1120 PetscValidHeaderSpecific(fe, PETSCFE_CLASSID, 1); 1121 PetscValidPointer(trFE, 3); 1122 *trFE = NULL; 1123 PetscCall(PetscFEGetDualSpace(fe, &dsp)); 1124 PetscCall(PetscDualSpaceGetDM(dsp, &dm)); 1125 PetscCall(DMPlexGetHeightStratum(dm, height, &hStart, &hEnd)); 1126 if (hEnd <= hStart) PetscFunctionReturn(PETSC_SUCCESS); 1127 PetscCall(PetscFECreatePointTrace(fe, hStart, trFE)); 1128 PetscFunctionReturn(PETSC_SUCCESS); 1129 } 1130 1131 /*@ 1132 PetscFEGetDimension - Get the dimension of the finite element space on a cell 1133 1134 Not Collective 1135 1136 Input Parameter: 1137 . fem - The `PetscFE` 1138 1139 Output Parameter: 1140 . dim - The dimension 1141 1142 Level: intermediate 1143 1144 .seealso: `PetscFE`, `PetscFECreate()`, `PetscSpaceGetDimension()`, `PetscDualSpaceGetDimension()` 1145 @*/ 1146 PetscErrorCode PetscFEGetDimension(PetscFE fem, PetscInt *dim) 1147 { 1148 PetscFunctionBegin; 1149 PetscValidHeaderSpecific(fem, PETSCFE_CLASSID, 1); 1150 PetscValidIntPointer(dim, 2); 1151 PetscTryTypeMethod(fem, getdimension, dim); 1152 PetscFunctionReturn(PETSC_SUCCESS); 1153 } 1154 1155 /*@C 1156 PetscFEPushforward - Map the reference element function to real space 1157 1158 Input Parameters: 1159 + fe - The `PetscFE` 1160 . fegeom - The cell geometry 1161 . Nv - The number of function values 1162 - vals - The function values 1163 1164 Output Parameter: 1165 . vals - The transformed function values 1166 1167 Level: advanced 1168 1169 Notes: 1170 This just forwards the call onto `PetscDualSpacePushforward()`. 1171 1172 It only handles transformations when the embedding dimension of the geometry in fegeom is the same as the reference dimension. 1173 1174 .seealso: `PetscFE`, `PetscFEGeom`, `PetscDualSpace`, `PetscDualSpacePushforward()` 1175 @*/ 1176 PetscErrorCode PetscFEPushforward(PetscFE fe, PetscFEGeom *fegeom, PetscInt Nv, PetscScalar vals[]) 1177 { 1178 PetscFunctionBeginHot; 1179 PetscCall(PetscDualSpacePushforward(fe->dualSpace, fegeom, Nv, fe->numComponents, vals)); 1180 PetscFunctionReturn(PETSC_SUCCESS); 1181 } 1182 1183 /*@C 1184 PetscFEPushforwardGradient - Map the reference element function gradient to real space 1185 1186 Input Parameters: 1187 + fe - The `PetscFE` 1188 . fegeom - The cell geometry 1189 . Nv - The number of function gradient values 1190 - vals - The function gradient values 1191 1192 Output Parameter: 1193 . vals - The transformed function gradient values 1194 1195 Level: advanced 1196 1197 Notes: 1198 This just forwards the call onto `PetscDualSpacePushforwardGradient()`. 1199 1200 It only handles transformations when the embedding dimension of the geometry in fegeom is the same as the reference dimension. 1201 1202 .seealso: `PetscFE`, `PetscFEGeom`, `PetscDualSpace`, `PetscFEPushforward()`, `PetscDualSpacePushforwardGradient()`, `PetscDualSpacePushforward()` 1203 @*/ 1204 PetscErrorCode PetscFEPushforwardGradient(PetscFE fe, PetscFEGeom *fegeom, PetscInt Nv, PetscScalar vals[]) 1205 { 1206 PetscFunctionBeginHot; 1207 PetscCall(PetscDualSpacePushforwardGradient(fe->dualSpace, fegeom, Nv, fe->numComponents, vals)); 1208 PetscFunctionReturn(PETSC_SUCCESS); 1209 } 1210 1211 /*@C 1212 PetscFEPushforwardHessian - Map the reference element function Hessian to real space 1213 1214 Input Parameters: 1215 + fe - The `PetscFE` 1216 . fegeom - The cell geometry 1217 . Nv - The number of function Hessian values 1218 - vals - The function Hessian values 1219 1220 Output Parameter: 1221 . vals - The transformed function Hessian values 1222 1223 Level: advanced 1224 1225 Notes: 1226 This just forwards the call onto `PetscDualSpacePushforwardHessian()`. 1227 1228 It only handles transformations when the embedding dimension of the geometry in fegeom is the same as the reference dimension. 1229 1230 Developer Notes: 1231 It is unclear why all these one line convenience routines are desirable 1232 1233 .seealso: `PetscFE`, `PetscFEGeom`, `PetscDualSpace`, `PetscFEPushforward()`, `PetscDualSpacePushforwardHessian()`, `PetscDualSpacePushforward()` 1234 @*/ 1235 PetscErrorCode PetscFEPushforwardHessian(PetscFE fe, PetscFEGeom *fegeom, PetscInt Nv, PetscScalar vals[]) 1236 { 1237 PetscFunctionBeginHot; 1238 PetscCall(PetscDualSpacePushforwardHessian(fe->dualSpace, fegeom, Nv, fe->numComponents, vals)); 1239 PetscFunctionReturn(PETSC_SUCCESS); 1240 } 1241 1242 /* 1243 Purpose: Compute element vector for chunk of elements 1244 1245 Input: 1246 Sizes: 1247 Ne: number of elements 1248 Nf: number of fields 1249 PetscFE 1250 dim: spatial dimension 1251 Nb: number of basis functions 1252 Nc: number of field components 1253 PetscQuadrature 1254 Nq: number of quadrature points 1255 1256 Geometry: 1257 PetscFEGeom[Ne] possibly *Nq 1258 PetscReal v0s[dim] 1259 PetscReal n[dim] 1260 PetscReal jacobians[dim*dim] 1261 PetscReal jacobianInverses[dim*dim] 1262 PetscReal jacobianDeterminants 1263 FEM: 1264 PetscFE 1265 PetscQuadrature 1266 PetscReal quadPoints[Nq*dim] 1267 PetscReal quadWeights[Nq] 1268 PetscReal basis[Nq*Nb*Nc] 1269 PetscReal basisDer[Nq*Nb*Nc*dim] 1270 PetscScalar coefficients[Ne*Nb*Nc] 1271 PetscScalar elemVec[Ne*Nb*Nc] 1272 1273 Problem: 1274 PetscInt f: the active field 1275 f0, f1 1276 1277 Work Space: 1278 PetscFE 1279 PetscScalar f0[Nq*dim]; 1280 PetscScalar f1[Nq*dim*dim]; 1281 PetscScalar u[Nc]; 1282 PetscScalar gradU[Nc*dim]; 1283 PetscReal x[dim]; 1284 PetscScalar realSpaceDer[dim]; 1285 1286 Purpose: Compute element vector for N_cb batches of elements 1287 1288 Input: 1289 Sizes: 1290 N_cb: Number of serial cell batches 1291 1292 Geometry: 1293 PetscReal v0s[Ne*dim] 1294 PetscReal jacobians[Ne*dim*dim] possibly *Nq 1295 PetscReal jacobianInverses[Ne*dim*dim] possibly *Nq 1296 PetscReal jacobianDeterminants[Ne] possibly *Nq 1297 FEM: 1298 static PetscReal quadPoints[Nq*dim] 1299 static PetscReal quadWeights[Nq] 1300 static PetscReal basis[Nq*Nb*Nc] 1301 static PetscReal basisDer[Nq*Nb*Nc*dim] 1302 PetscScalar coefficients[Ne*Nb*Nc] 1303 PetscScalar elemVec[Ne*Nb*Nc] 1304 1305 ex62.c: 1306 PetscErrorCode PetscFEIntegrateResidualBatch(PetscInt Ne, PetscInt numFields, PetscInt field, PetscQuadrature quad[], const PetscScalar coefficients[], 1307 const PetscReal v0s[], const PetscReal jacobians[], const PetscReal jacobianInverses[], const PetscReal jacobianDeterminants[], 1308 void (*f0_func)(const PetscScalar u[], const PetscScalar gradU[], const PetscReal x[], PetscScalar f0[]), 1309 void (*f1_func)(const PetscScalar u[], const PetscScalar gradU[], const PetscReal x[], PetscScalar f1[]), PetscScalar elemVec[]) 1310 1311 ex52.c: 1312 PetscErrorCode IntegrateLaplacianBatchCPU(PetscInt Ne, PetscInt Nb, const PetscScalar coefficients[], const PetscReal jacobianInverses[], const PetscReal jacobianDeterminants[], PetscInt Nq, const PetscReal quadPoints[], const PetscReal quadWeights[], const PetscReal basisTabulation[], const PetscReal basisDerTabulation[], PetscScalar elemVec[], AppCtx *user) 1313 PetscErrorCode IntegrateElasticityBatchCPU(PetscInt Ne, PetscInt Nb, PetscInt Ncomp, const PetscScalar coefficients[], const PetscReal jacobianInverses[], const PetscReal jacobianDeterminants[], PetscInt Nq, const PetscReal quadPoints[], const PetscReal quadWeights[], const PetscReal basisTabulation[], const PetscReal basisDerTabulation[], PetscScalar elemVec[], AppCtx *user) 1314 1315 ex52_integrateElement.cu 1316 __global__ void integrateElementQuadrature(int N_cb, realType *coefficients, realType *jacobianInverses, realType *jacobianDeterminants, realType *elemVec) 1317 1318 PETSC_EXTERN PetscErrorCode IntegrateElementBatchGPU(PetscInt spatial_dim, PetscInt Ne, PetscInt Ncb, PetscInt Nbc, PetscInt Nbl, const PetscScalar coefficients[], 1319 const PetscReal jacobianInverses[], const PetscReal jacobianDeterminants[], PetscScalar elemVec[], 1320 PetscLogEvent event, PetscInt debug, PetscInt pde_op) 1321 1322 ex52_integrateElementOpenCL.c: 1323 PETSC_EXTERN PetscErrorCode IntegrateElementBatchGPU(PetscInt spatial_dim, PetscInt Ne, PetscInt Ncb, PetscInt Nbc, PetscInt N_bl, const PetscScalar coefficients[], 1324 const PetscReal jacobianInverses[], const PetscReal jacobianDeterminants[], PetscScalar elemVec[], 1325 PetscLogEvent event, PetscInt debug, PetscInt pde_op) 1326 1327 __kernel void integrateElementQuadrature(int N_cb, __global float *coefficients, __global float *jacobianInverses, __global float *jacobianDeterminants, __global float *elemVec) 1328 */ 1329 1330 /*@C 1331 PetscFEIntegrate - Produce the integral for the given field for a chunk of elements by quadrature integration 1332 1333 Not Collective 1334 1335 Input Parameters: 1336 + prob - The `PetscDS` specifying the discretizations and continuum functions 1337 . field - The field being integrated 1338 . Ne - The number of elements in the chunk 1339 . cgeom - The cell geometry for each cell in the chunk 1340 . coefficients - The array of FEM basis coefficients for the elements 1341 . probAux - The `PetscDS` specifying the auxiliary discretizations 1342 - coefficientsAux - The array of FEM auxiliary basis coefficients for the elements 1343 1344 Output Parameter: 1345 . integral - the integral for this field 1346 1347 Level: intermediate 1348 1349 Developer Notes: 1350 The function name begins with `PetscFE` and yet the first argument is `PetscDS` and it has no `PetscFE` arguments. 1351 1352 .seealso: `PetscFE`, `PetscDS`, `PetscFEIntegrateResidual()`, `PetscFEIntegrateBd()` 1353 @*/ 1354 PetscErrorCode PetscFEIntegrate(PetscDS prob, PetscInt field, PetscInt Ne, PetscFEGeom *cgeom, const PetscScalar coefficients[], PetscDS probAux, const PetscScalar coefficientsAux[], PetscScalar integral[]) 1355 { 1356 PetscFE fe; 1357 1358 PetscFunctionBegin; 1359 PetscValidHeaderSpecific(prob, PETSCDS_CLASSID, 1); 1360 PetscCall(PetscDSGetDiscretization(prob, field, (PetscObject *)&fe)); 1361 if (fe->ops->integrate) PetscCall((*fe->ops->integrate)(prob, field, Ne, cgeom, coefficients, probAux, coefficientsAux, integral)); 1362 PetscFunctionReturn(PETSC_SUCCESS); 1363 } 1364 1365 /*@C 1366 PetscFEIntegrateBd - Produce the integral for the given field for a chunk of elements by quadrature integration 1367 1368 Not Collective 1369 1370 Input Parameters: 1371 + prob - The `PetscDS` specifying the discretizations and continuum functions 1372 . field - The field being integrated 1373 . obj_func - The function to be integrated 1374 . Ne - The number of elements in the chunk 1375 . geom - The face geometry for each face in the chunk 1376 . coefficients - The array of FEM basis coefficients for the elements 1377 . probAux - The `PetscDS` specifying the auxiliary discretizations 1378 - coefficientsAux - The array of FEM auxiliary basis coefficients for the elements 1379 1380 Output Parameter: 1381 . integral - the integral for this field 1382 1383 Level: intermediate 1384 1385 Developer Notes: 1386 The function name begins with `PetscFE` and yet the first argument is `PetscDS` and it has no `PetscFE` arguments. 1387 1388 .seealso: `PetscFE`, `PetscDS`, `PetscFEIntegrateResidual()`, `PetscFEIntegrate()` 1389 @*/ 1390 PetscErrorCode PetscFEIntegrateBd(PetscDS prob, PetscInt field, void (*obj_func)(PetscInt, PetscInt, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], PetscReal, const PetscReal[], const PetscReal[], PetscInt, const PetscScalar[], PetscScalar[]), PetscInt Ne, PetscFEGeom *geom, const PetscScalar coefficients[], PetscDS probAux, const PetscScalar coefficientsAux[], PetscScalar integral[]) 1391 { 1392 PetscFE fe; 1393 1394 PetscFunctionBegin; 1395 PetscValidHeaderSpecific(prob, PETSCDS_CLASSID, 1); 1396 PetscCall(PetscDSGetDiscretization(prob, field, (PetscObject *)&fe)); 1397 if (fe->ops->integratebd) PetscCall((*fe->ops->integratebd)(prob, field, obj_func, Ne, geom, coefficients, probAux, coefficientsAux, integral)); 1398 PetscFunctionReturn(PETSC_SUCCESS); 1399 } 1400 1401 /*@C 1402 PetscFEIntegrateResidual - Produce the element residual vector for a chunk of elements by quadrature integration 1403 1404 Not Collective 1405 1406 Input Parameters: 1407 + ds - The `PetscDS` specifying the discretizations and continuum functions 1408 . key - The (label+value, field) being integrated 1409 . Ne - The number of elements in the chunk 1410 . cgeom - The cell geometry for each cell in the chunk 1411 . coefficients - The array of FEM basis coefficients for the elements 1412 . coefficients_t - The array of FEM basis time derivative coefficients for the elements 1413 . probAux - The `PetscDS` specifying the auxiliary discretizations 1414 . coefficientsAux - The array of FEM auxiliary basis coefficients for the elements 1415 - t - The time 1416 1417 Output Parameter: 1418 . elemVec - the element residual vectors from each element 1419 1420 Level: intermediate 1421 1422 Note: 1423 .vb 1424 Loop over batch of elements (e): 1425 Loop over quadrature points (q): 1426 Make u_q and gradU_q (loops over fields,Nb,Ncomp) and x_q 1427 Call f_0 and f_1 1428 Loop over element vector entries (f,fc --> i): 1429 elemVec[i] += \psi^{fc}_f(q) f0_{fc}(u, \nabla u) + \nabla\psi^{fc}_f(q) \cdot f1_{fc,df}(u, \nabla u) 1430 .ve 1431 1432 .seealso: `PetscFEIntegrateResidual()` 1433 @*/ 1434 PetscErrorCode PetscFEIntegrateResidual(PetscDS ds, PetscFormKey key, PetscInt Ne, PetscFEGeom *cgeom, const PetscScalar coefficients[], const PetscScalar coefficients_t[], PetscDS probAux, const PetscScalar coefficientsAux[], PetscReal t, PetscScalar elemVec[]) 1435 { 1436 PetscFE fe; 1437 1438 PetscFunctionBeginHot; 1439 PetscValidHeaderSpecific(ds, PETSCDS_CLASSID, 1); 1440 PetscCall(PetscDSGetDiscretization(ds, key.field, (PetscObject *)&fe)); 1441 if (fe->ops->integrateresidual) PetscCall((*fe->ops->integrateresidual)(ds, key, Ne, cgeom, coefficients, coefficients_t, probAux, coefficientsAux, t, elemVec)); 1442 PetscFunctionReturn(PETSC_SUCCESS); 1443 } 1444 1445 /*@C 1446 PetscFEIntegrateBdResidual - Produce the element residual vector for a chunk of elements by quadrature integration over a boundary 1447 1448 Not Collective 1449 1450 Input Parameters: 1451 + ds - The `PetscDS` specifying the discretizations and continuum functions 1452 . wf - The PetscWeakForm object holding the pointwise functions 1453 . key - The (label+value, field) being integrated 1454 . Ne - The number of elements in the chunk 1455 . fgeom - The face geometry for each cell in the chunk 1456 . coefficients - The array of FEM basis coefficients for the elements 1457 . coefficients_t - The array of FEM basis time derivative coefficients for the elements 1458 . probAux - The `PetscDS` specifying the auxiliary discretizations 1459 . coefficientsAux - The array of FEM auxiliary basis coefficients for the elements 1460 - t - The time 1461 1462 Output Parameter: 1463 . elemVec - the element residual vectors from each element 1464 1465 Level: intermediate 1466 1467 .seealso: `PetscFEIntegrateResidual()` 1468 @*/ 1469 PetscErrorCode PetscFEIntegrateBdResidual(PetscDS ds, PetscWeakForm wf, PetscFormKey key, PetscInt Ne, PetscFEGeom *fgeom, const PetscScalar coefficients[], const PetscScalar coefficients_t[], PetscDS probAux, const PetscScalar coefficientsAux[], PetscReal t, PetscScalar elemVec[]) 1470 { 1471 PetscFE fe; 1472 1473 PetscFunctionBegin; 1474 PetscValidHeaderSpecific(ds, PETSCDS_CLASSID, 1); 1475 PetscCall(PetscDSGetDiscretization(ds, key.field, (PetscObject *)&fe)); 1476 if (fe->ops->integratebdresidual) PetscCall((*fe->ops->integratebdresidual)(ds, wf, key, Ne, fgeom, coefficients, coefficients_t, probAux, coefficientsAux, t, elemVec)); 1477 PetscFunctionReturn(PETSC_SUCCESS); 1478 } 1479 1480 /*@C 1481 PetscFEIntegrateHybridResidual - Produce the element residual vector for a chunk of hybrid element faces by quadrature integration 1482 1483 Not Collective 1484 1485 Input Parameters: 1486 + ds - The `PetscDS` specifying the discretizations and continuum functions 1487 . dsIn - The `PetscDS` specifying the discretizations and continuum functions for input 1488 . key - The (label+value, field) being integrated 1489 . s - The side of the cell being integrated, 0 for negative and 1 for positive 1490 . Ne - The number of elements in the chunk 1491 . fgeom - The face geometry for each cell in the chunk 1492 . coefficients - The array of FEM basis coefficients for the elements 1493 . coefficients_t - The array of FEM basis time derivative coefficients for the elements 1494 . probAux - The `PetscDS` specifying the auxiliary discretizations 1495 . coefficientsAux - The array of FEM auxiliary basis coefficients for the elements 1496 - t - The time 1497 1498 Output Parameter 1499 . elemVec - the element residual vectors from each element 1500 1501 Level: developer 1502 1503 .seealso: `PetscFEIntegrateResidual()` 1504 @*/ 1505 PetscErrorCode PetscFEIntegrateHybridResidual(PetscDS ds, PetscDS dsIn, PetscFormKey key, PetscInt s, PetscInt Ne, PetscFEGeom *fgeom, const PetscScalar coefficients[], const PetscScalar coefficients_t[], PetscDS probAux, const PetscScalar coefficientsAux[], PetscReal t, PetscScalar elemVec[]) 1506 { 1507 PetscFE fe; 1508 1509 PetscFunctionBegin; 1510 PetscValidHeaderSpecific(ds, PETSCDS_CLASSID, 1); 1511 PetscValidHeaderSpecific(dsIn, PETSCDS_CLASSID, 2); 1512 PetscCall(PetscDSGetDiscretization(ds, key.field, (PetscObject *)&fe)); 1513 if (fe->ops->integratehybridresidual) PetscCall((*fe->ops->integratehybridresidual)(ds, dsIn, key, s, Ne, fgeom, coefficients, coefficients_t, probAux, coefficientsAux, t, elemVec)); 1514 PetscFunctionReturn(PETSC_SUCCESS); 1515 } 1516 1517 /*@C 1518 PetscFEIntegrateJacobian - Produce the element Jacobian for a chunk of elements by quadrature integration 1519 1520 Not Collective 1521 1522 Input Parameters: 1523 + ds - The `PetscDS` specifying the discretizations and continuum functions 1524 . jtype - The type of matrix pointwise functions that should be used 1525 . key - The (label+value, fieldI*Nf + fieldJ) being integrated 1526 . s - The side of the cell being integrated, 0 for negative and 1 for positive 1527 . Ne - The number of elements in the chunk 1528 . cgeom - The cell geometry for each cell in the chunk 1529 . coefficients - The array of FEM basis coefficients for the elements for the Jacobian evaluation point 1530 . coefficients_t - The array of FEM basis time derivative coefficients for the elements 1531 . probAux - The `PetscDS` specifying the auxiliary discretizations 1532 . coefficientsAux - The array of FEM auxiliary basis coefficients for the elements 1533 . t - The time 1534 - u_tshift - A multiplier for the dF/du_t term (as opposed to the dF/du term) 1535 1536 Output Parameter: 1537 . elemMat - the element matrices for the Jacobian from each element 1538 1539 Level: intermediate 1540 1541 Note: 1542 .vb 1543 Loop over batch of elements (e): 1544 Loop over element matrix entries (f,fc,g,gc --> i,j): 1545 Loop over quadrature points (q): 1546 Make u_q and gradU_q (loops over fields,Nb,Ncomp) 1547 elemMat[i,j] += \psi^{fc}_f(q) g0_{fc,gc}(u, \nabla u) \phi^{gc}_g(q) 1548 + \psi^{fc}_f(q) \cdot g1_{fc,gc,dg}(u, \nabla u) \nabla\phi^{gc}_g(q) 1549 + \nabla\psi^{fc}_f(q) \cdot g2_{fc,gc,df}(u, \nabla u) \phi^{gc}_g(q) 1550 + \nabla\psi^{fc}_f(q) \cdot g3_{fc,gc,df,dg}(u, \nabla u) \nabla\phi^{gc}_g(q) 1551 .ve 1552 1553 .seealso: `PetscFEIntegrateResidual()` 1554 @*/ 1555 PetscErrorCode PetscFEIntegrateJacobian(PetscDS ds, PetscFEJacobianType jtype, PetscFormKey key, PetscInt Ne, PetscFEGeom *cgeom, const PetscScalar coefficients[], const PetscScalar coefficients_t[], PetscDS probAux, const PetscScalar coefficientsAux[], PetscReal t, PetscReal u_tshift, PetscScalar elemMat[]) 1556 { 1557 PetscFE fe; 1558 PetscInt Nf; 1559 1560 PetscFunctionBegin; 1561 PetscValidHeaderSpecific(ds, PETSCDS_CLASSID, 1); 1562 PetscCall(PetscDSGetNumFields(ds, &Nf)); 1563 PetscCall(PetscDSGetDiscretization(ds, key.field / Nf, (PetscObject *)&fe)); 1564 if (fe->ops->integratejacobian) PetscCall((*fe->ops->integratejacobian)(ds, jtype, key, Ne, cgeom, coefficients, coefficients_t, probAux, coefficientsAux, t, u_tshift, elemMat)); 1565 PetscFunctionReturn(PETSC_SUCCESS); 1566 } 1567 1568 /*@C 1569 PetscFEIntegrateBdJacobian - Produce the boundary element Jacobian for a chunk of elements by quadrature integration 1570 1571 Not Collective 1572 1573 Input Parameters: 1574 + ds - The `PetscDS` specifying the discretizations and continuum functions 1575 . wf - The PetscWeakForm holding the pointwise functions 1576 . key - The (label+value, fieldI*Nf + fieldJ) being integrated 1577 . Ne - The number of elements in the chunk 1578 . fgeom - The face geometry for each cell in the chunk 1579 . coefficients - The array of FEM basis coefficients for the elements for the Jacobian evaluation point 1580 . coefficients_t - The array of FEM basis time derivative coefficients for the elements 1581 . probAux - The `PetscDS` specifying the auxiliary discretizations 1582 . coefficientsAux - The array of FEM auxiliary basis coefficients for the elements 1583 . t - The time 1584 - u_tshift - A multiplier for the dF/du_t term (as opposed to the dF/du term) 1585 1586 Output Parameter: 1587 . elemMat - the element matrices for the Jacobian from each element 1588 1589 Level: intermediate 1590 1591 Note: 1592 .vb 1593 Loop over batch of elements (e): 1594 Loop over element matrix entries (f,fc,g,gc --> i,j): 1595 Loop over quadrature points (q): 1596 Make u_q and gradU_q (loops over fields,Nb,Ncomp) 1597 elemMat[i,j] += \psi^{fc}_f(q) g0_{fc,gc}(u, \nabla u) \phi^{gc}_g(q) 1598 + \psi^{fc}_f(q) \cdot g1_{fc,gc,dg}(u, \nabla u) \nabla\phi^{gc}_g(q) 1599 + \nabla\psi^{fc}_f(q) \cdot g2_{fc,gc,df}(u, \nabla u) \phi^{gc}_g(q) 1600 + \nabla\psi^{fc}_f(q) \cdot g3_{fc,gc,df,dg}(u, \nabla u) \nabla\phi^{gc}_g(q) 1601 .ve 1602 1603 .seealso: `PetscFEIntegrateJacobian()`, `PetscFEIntegrateResidual()` 1604 @*/ 1605 PetscErrorCode PetscFEIntegrateBdJacobian(PetscDS ds, PetscWeakForm wf, PetscFormKey key, PetscInt Ne, PetscFEGeom *fgeom, const PetscScalar coefficients[], const PetscScalar coefficients_t[], PetscDS probAux, const PetscScalar coefficientsAux[], PetscReal t, PetscReal u_tshift, PetscScalar elemMat[]) 1606 { 1607 PetscFE fe; 1608 PetscInt Nf; 1609 1610 PetscFunctionBegin; 1611 PetscValidHeaderSpecific(ds, PETSCDS_CLASSID, 1); 1612 PetscCall(PetscDSGetNumFields(ds, &Nf)); 1613 PetscCall(PetscDSGetDiscretization(ds, key.field / Nf, (PetscObject *)&fe)); 1614 if (fe->ops->integratebdjacobian) PetscCall((*fe->ops->integratebdjacobian)(ds, wf, key, Ne, fgeom, coefficients, coefficients_t, probAux, coefficientsAux, t, u_tshift, elemMat)); 1615 PetscFunctionReturn(PETSC_SUCCESS); 1616 } 1617 1618 /*@C 1619 PetscFEIntegrateHybridJacobian - Produce the boundary element Jacobian for a chunk of hybrid elements by quadrature integration 1620 1621 Not Collective 1622 1623 Input Parameters: 1624 + ds - The `PetscDS` specifying the discretizations and continuum functions for the output 1625 . dsIn - The `PetscDS` specifying the discretizations and continuum functions for the input 1626 . jtype - The type of matrix pointwise functions that should be used 1627 . key - The (label+value, fieldI*Nf + fieldJ) being integrated 1628 . s - The side of the cell being integrated, 0 for negative and 1 for positive 1629 . Ne - The number of elements in the chunk 1630 . fgeom - The face geometry for each cell in the chunk 1631 . coefficients - The array of FEM basis coefficients for the elements for the Jacobian evaluation point 1632 . coefficients_t - The array of FEM basis time derivative coefficients for the elements 1633 . probAux - The `PetscDS` specifying the auxiliary discretizations 1634 . coefficientsAux - The array of FEM auxiliary basis coefficients for the elements 1635 . t - The time 1636 - u_tshift - A multiplier for the dF/du_t term (as opposed to the dF/du term) 1637 1638 Output Parameter 1639 . elemMat - the element matrices for the Jacobian from each element 1640 1641 Level: developer 1642 1643 Note: 1644 .vb 1645 Loop over batch of elements (e): 1646 Loop over element matrix entries (f,fc,g,gc --> i,j): 1647 Loop over quadrature points (q): 1648 Make u_q and gradU_q (loops over fields,Nb,Ncomp) 1649 elemMat[i,j] += \psi^{fc}_f(q) g0_{fc,gc}(u, \nabla u) \phi^{gc}_g(q) 1650 + \psi^{fc}_f(q) \cdot g1_{fc,gc,dg}(u, \nabla u) \nabla\phi^{gc}_g(q) 1651 + \nabla\psi^{fc}_f(q) \cdot g2_{fc,gc,df}(u, \nabla u) \phi^{gc}_g(q) 1652 + \nabla\psi^{fc}_f(q) \cdot g3_{fc,gc,df,dg}(u, \nabla u) \nabla\phi^{gc}_g(q) 1653 .ve 1654 1655 .seealso: `PetscFEIntegrateJacobian()`, `PetscFEIntegrateResidual()` 1656 @*/ 1657 PetscErrorCode PetscFEIntegrateHybridJacobian(PetscDS ds, PetscDS dsIn, PetscFEJacobianType jtype, PetscFormKey key, PetscInt s, PetscInt Ne, PetscFEGeom *fgeom, const PetscScalar coefficients[], const PetscScalar coefficients_t[], PetscDS probAux, const PetscScalar coefficientsAux[], PetscReal t, PetscReal u_tshift, PetscScalar elemMat[]) 1658 { 1659 PetscFE fe; 1660 PetscInt Nf; 1661 1662 PetscFunctionBegin; 1663 PetscValidHeaderSpecific(ds, PETSCDS_CLASSID, 1); 1664 PetscCall(PetscDSGetNumFields(ds, &Nf)); 1665 PetscCall(PetscDSGetDiscretization(ds, key.field / Nf, (PetscObject *)&fe)); 1666 if (fe->ops->integratehybridjacobian) PetscCall((*fe->ops->integratehybridjacobian)(ds, dsIn, jtype, key, s, Ne, fgeom, coefficients, coefficients_t, probAux, coefficientsAux, t, u_tshift, elemMat)); 1667 PetscFunctionReturn(PETSC_SUCCESS); 1668 } 1669 1670 /*@ 1671 PetscFEGetHeightSubspace - Get the subspace of this space for a mesh point of a given height 1672 1673 Input Parameters: 1674 + fe - The finite element space 1675 - height - The height of the `DMPLEX` point 1676 1677 Output Parameter: 1678 . subfe - The subspace of this `PetscFE` space 1679 1680 Level: advanced 1681 1682 Note: 1683 For example, if we want the subspace of this space for a face, we would choose height = 1. 1684 1685 .seealso: `PetscFECreateDefault()` 1686 @*/ 1687 PetscErrorCode PetscFEGetHeightSubspace(PetscFE fe, PetscInt height, PetscFE *subfe) 1688 { 1689 PetscSpace P, subP; 1690 PetscDualSpace Q, subQ; 1691 PetscQuadrature subq; 1692 PetscFEType fetype; 1693 PetscInt dim, Nc; 1694 1695 PetscFunctionBegin; 1696 PetscValidHeaderSpecific(fe, PETSCFE_CLASSID, 1); 1697 PetscValidPointer(subfe, 3); 1698 if (height == 0) { 1699 *subfe = fe; 1700 PetscFunctionReturn(PETSC_SUCCESS); 1701 } 1702 PetscCall(PetscFEGetBasisSpace(fe, &P)); 1703 PetscCall(PetscFEGetDualSpace(fe, &Q)); 1704 PetscCall(PetscFEGetNumComponents(fe, &Nc)); 1705 PetscCall(PetscFEGetFaceQuadrature(fe, &subq)); 1706 PetscCall(PetscDualSpaceGetDimension(Q, &dim)); 1707 PetscCheck(height <= dim && height >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Asked for space at height %" PetscInt_FMT " for dimension %" PetscInt_FMT " space", height, dim); 1708 if (!fe->subspaces) PetscCall(PetscCalloc1(dim, &fe->subspaces)); 1709 if (height <= dim) { 1710 if (!fe->subspaces[height - 1]) { 1711 PetscFE sub = NULL; 1712 const char *name; 1713 1714 PetscCall(PetscSpaceGetHeightSubspace(P, height, &subP)); 1715 PetscCall(PetscDualSpaceGetHeightSubspace(Q, height, &subQ)); 1716 if (subQ) { 1717 PetscCall(PetscFECreate(PetscObjectComm((PetscObject)fe), &sub)); 1718 PetscCall(PetscObjectGetName((PetscObject)fe, &name)); 1719 PetscCall(PetscObjectSetName((PetscObject)sub, name)); 1720 PetscCall(PetscFEGetType(fe, &fetype)); 1721 PetscCall(PetscFESetType(sub, fetype)); 1722 PetscCall(PetscFESetBasisSpace(sub, subP)); 1723 PetscCall(PetscFESetDualSpace(sub, subQ)); 1724 PetscCall(PetscFESetNumComponents(sub, Nc)); 1725 PetscCall(PetscFESetUp(sub)); 1726 PetscCall(PetscFESetQuadrature(sub, subq)); 1727 } 1728 fe->subspaces[height - 1] = sub; 1729 } 1730 *subfe = fe->subspaces[height - 1]; 1731 } else { 1732 *subfe = NULL; 1733 } 1734 PetscFunctionReturn(PETSC_SUCCESS); 1735 } 1736 1737 /*@ 1738 PetscFERefine - Create a "refined" `PetscFE` object that refines the reference cell into smaller copies. This is typically used 1739 to precondition a higher order method with a lower order method on a refined mesh having the same number of dofs (but more 1740 sparsity). It is also used to create an interpolation between regularly refined meshes. 1741 1742 Collective 1743 1744 Input Parameter: 1745 . fe - The initial `PetscFE` 1746 1747 Output Parameter: 1748 . feRef - The refined `PetscFE` 1749 1750 Level: advanced 1751 1752 .seealso: `PetscFEType`, `PetscFECreate()`, `PetscFESetType()` 1753 @*/ 1754 PetscErrorCode PetscFERefine(PetscFE fe, PetscFE *feRef) 1755 { 1756 PetscSpace P, Pref; 1757 PetscDualSpace Q, Qref; 1758 DM K, Kref; 1759 PetscQuadrature q, qref; 1760 const PetscReal *v0, *jac; 1761 PetscInt numComp, numSubelements; 1762 PetscInt cStart, cEnd, c; 1763 PetscDualSpace *cellSpaces; 1764 1765 PetscFunctionBegin; 1766 PetscCall(PetscFEGetBasisSpace(fe, &P)); 1767 PetscCall(PetscFEGetDualSpace(fe, &Q)); 1768 PetscCall(PetscFEGetQuadrature(fe, &q)); 1769 PetscCall(PetscDualSpaceGetDM(Q, &K)); 1770 /* Create space */ 1771 PetscCall(PetscObjectReference((PetscObject)P)); 1772 Pref = P; 1773 /* Create dual space */ 1774 PetscCall(PetscDualSpaceDuplicate(Q, &Qref)); 1775 PetscCall(PetscDualSpaceSetType(Qref, PETSCDUALSPACEREFINED)); 1776 PetscCall(DMRefine(K, PetscObjectComm((PetscObject)fe), &Kref)); 1777 PetscCall(PetscDualSpaceSetDM(Qref, Kref)); 1778 PetscCall(DMPlexGetHeightStratum(Kref, 0, &cStart, &cEnd)); 1779 PetscCall(PetscMalloc1(cEnd - cStart, &cellSpaces)); 1780 /* TODO: fix for non-uniform refinement */ 1781 for (c = 0; c < cEnd - cStart; c++) cellSpaces[c] = Q; 1782 PetscCall(PetscDualSpaceRefinedSetCellSpaces(Qref, cellSpaces)); 1783 PetscCall(PetscFree(cellSpaces)); 1784 PetscCall(DMDestroy(&Kref)); 1785 PetscCall(PetscDualSpaceSetUp(Qref)); 1786 /* Create element */ 1787 PetscCall(PetscFECreate(PetscObjectComm((PetscObject)fe), feRef)); 1788 PetscCall(PetscFESetType(*feRef, PETSCFECOMPOSITE)); 1789 PetscCall(PetscFESetBasisSpace(*feRef, Pref)); 1790 PetscCall(PetscFESetDualSpace(*feRef, Qref)); 1791 PetscCall(PetscFEGetNumComponents(fe, &numComp)); 1792 PetscCall(PetscFESetNumComponents(*feRef, numComp)); 1793 PetscCall(PetscFESetUp(*feRef)); 1794 PetscCall(PetscSpaceDestroy(&Pref)); 1795 PetscCall(PetscDualSpaceDestroy(&Qref)); 1796 /* Create quadrature */ 1797 PetscCall(PetscFECompositeGetMapping(*feRef, &numSubelements, &v0, &jac, NULL)); 1798 PetscCall(PetscQuadratureExpandComposite(q, numSubelements, v0, jac, &qref)); 1799 PetscCall(PetscFESetQuadrature(*feRef, qref)); 1800 PetscCall(PetscQuadratureDestroy(&qref)); 1801 PetscFunctionReturn(PETSC_SUCCESS); 1802 } 1803 1804 static PetscErrorCode PetscFESetDefaultName_Private(PetscFE fe) 1805 { 1806 PetscSpace P; 1807 PetscDualSpace Q; 1808 DM K; 1809 DMPolytopeType ct; 1810 PetscInt degree; 1811 char name[64]; 1812 1813 PetscFunctionBegin; 1814 PetscCall(PetscFEGetBasisSpace(fe, &P)); 1815 PetscCall(PetscSpaceGetDegree(P, °ree, NULL)); 1816 PetscCall(PetscFEGetDualSpace(fe, &Q)); 1817 PetscCall(PetscDualSpaceGetDM(Q, &K)); 1818 PetscCall(DMPlexGetCellType(K, 0, &ct)); 1819 switch (ct) { 1820 case DM_POLYTOPE_SEGMENT: 1821 case DM_POLYTOPE_POINT_PRISM_TENSOR: 1822 case DM_POLYTOPE_QUADRILATERAL: 1823 case DM_POLYTOPE_SEG_PRISM_TENSOR: 1824 case DM_POLYTOPE_HEXAHEDRON: 1825 case DM_POLYTOPE_QUAD_PRISM_TENSOR: 1826 PetscCall(PetscSNPrintf(name, sizeof(name), "Q%" PetscInt_FMT, degree)); 1827 break; 1828 case DM_POLYTOPE_TRIANGLE: 1829 case DM_POLYTOPE_TETRAHEDRON: 1830 PetscCall(PetscSNPrintf(name, sizeof(name), "P%" PetscInt_FMT, degree)); 1831 break; 1832 case DM_POLYTOPE_TRI_PRISM: 1833 case DM_POLYTOPE_TRI_PRISM_TENSOR: 1834 PetscCall(PetscSNPrintf(name, sizeof(name), "P%" PetscInt_FMT "xQ%" PetscInt_FMT, degree, degree)); 1835 break; 1836 default: 1837 PetscCall(PetscSNPrintf(name, sizeof(name), "FE")); 1838 } 1839 PetscCall(PetscFESetName(fe, name)); 1840 PetscFunctionReturn(PETSC_SUCCESS); 1841 } 1842 1843 /*@ 1844 PetscFECreateFromSpaces - Create a `PetscFE` from the basis and dual spaces 1845 1846 Collective 1847 1848 Input Parameters: 1849 + P - The basis space 1850 . Q - The dual space 1851 . q - The cell quadrature 1852 - fq - The face quadrature 1853 1854 Output Parameter: 1855 . fem - The `PetscFE` object 1856 1857 Level: beginner 1858 1859 Note: 1860 The `PetscFE` takes ownership of these spaces by calling destroy on each. They should not be used after this call, and for borrowed references from `PetscFEGetSpace()` and the like, the caller must use `PetscObjectReference` before this call. 1861 1862 .seealso: `PetscFE`, `PetscSpace`, `PetscDualSpace`, `PetscQuadrature`, 1863 `PetscFECreateLagrangeByCell()`, `PetscFECreateDefault()`, `PetscFECreateByCell()`, `PetscFECreate()`, `PetscSpaceCreate()`, `PetscDualSpaceCreate()` 1864 @*/ 1865 PetscErrorCode PetscFECreateFromSpaces(PetscSpace P, PetscDualSpace Q, PetscQuadrature q, PetscQuadrature fq, PetscFE *fem) 1866 { 1867 PetscInt Nc; 1868 const char *prefix; 1869 1870 PetscFunctionBegin; 1871 PetscCall(PetscFECreate(PetscObjectComm((PetscObject)P), fem)); 1872 PetscCall(PetscObjectGetOptionsPrefix((PetscObject)P, &prefix)); 1873 PetscCall(PetscObjectSetOptionsPrefix((PetscObject)*fem, prefix)); 1874 PetscCall(PetscFESetType(*fem, PETSCFEBASIC)); 1875 PetscCall(PetscFESetBasisSpace(*fem, P)); 1876 PetscCall(PetscFESetDualSpace(*fem, Q)); 1877 PetscCall(PetscSpaceGetNumComponents(P, &Nc)); 1878 PetscCall(PetscFESetNumComponents(*fem, Nc)); 1879 PetscCall(PetscFESetUp(*fem)); 1880 PetscCall(PetscSpaceDestroy(&P)); 1881 PetscCall(PetscDualSpaceDestroy(&Q)); 1882 PetscCall(PetscFESetQuadrature(*fem, q)); 1883 PetscCall(PetscFESetFaceQuadrature(*fem, fq)); 1884 PetscCall(PetscQuadratureDestroy(&q)); 1885 PetscCall(PetscQuadratureDestroy(&fq)); 1886 PetscCall(PetscFESetDefaultName_Private(*fem)); 1887 PetscFunctionReturn(PETSC_SUCCESS); 1888 } 1889 1890 static PetscErrorCode PetscFECreate_Internal(MPI_Comm comm, PetscInt dim, PetscInt Nc, DMPolytopeType ct, const char prefix[], PetscInt degree, PetscInt qorder, PetscBool setFromOptions, PetscFE *fem) 1891 { 1892 DM K; 1893 PetscSpace P; 1894 PetscDualSpace Q; 1895 PetscQuadrature q, fq; 1896 PetscBool tensor; 1897 1898 PetscFunctionBegin; 1899 if (prefix) PetscValidCharPointer(prefix, 5); 1900 PetscValidPointer(fem, 9); 1901 switch (ct) { 1902 case DM_POLYTOPE_SEGMENT: 1903 case DM_POLYTOPE_POINT_PRISM_TENSOR: 1904 case DM_POLYTOPE_QUADRILATERAL: 1905 case DM_POLYTOPE_SEG_PRISM_TENSOR: 1906 case DM_POLYTOPE_HEXAHEDRON: 1907 case DM_POLYTOPE_QUAD_PRISM_TENSOR: 1908 tensor = PETSC_TRUE; 1909 break; 1910 default: 1911 tensor = PETSC_FALSE; 1912 } 1913 /* Create space */ 1914 PetscCall(PetscSpaceCreate(comm, &P)); 1915 PetscCall(PetscSpaceSetType(P, PETSCSPACEPOLYNOMIAL)); 1916 PetscCall(PetscObjectSetOptionsPrefix((PetscObject)P, prefix)); 1917 PetscCall(PetscSpacePolynomialSetTensor(P, tensor)); 1918 PetscCall(PetscSpaceSetNumComponents(P, Nc)); 1919 PetscCall(PetscSpaceSetNumVariables(P, dim)); 1920 if (degree >= 0) { 1921 PetscCall(PetscSpaceSetDegree(P, degree, PETSC_DETERMINE)); 1922 if (ct == DM_POLYTOPE_TRI_PRISM || ct == DM_POLYTOPE_TRI_PRISM_TENSOR) { 1923 PetscSpace Pend, Pside; 1924 1925 PetscCall(PetscSpaceCreate(comm, &Pend)); 1926 PetscCall(PetscSpaceSetType(Pend, PETSCSPACEPOLYNOMIAL)); 1927 PetscCall(PetscSpacePolynomialSetTensor(Pend, PETSC_FALSE)); 1928 PetscCall(PetscSpaceSetNumComponents(Pend, Nc)); 1929 PetscCall(PetscSpaceSetNumVariables(Pend, dim - 1)); 1930 PetscCall(PetscSpaceSetDegree(Pend, degree, PETSC_DETERMINE)); 1931 PetscCall(PetscSpaceCreate(comm, &Pside)); 1932 PetscCall(PetscSpaceSetType(Pside, PETSCSPACEPOLYNOMIAL)); 1933 PetscCall(PetscSpacePolynomialSetTensor(Pside, PETSC_FALSE)); 1934 PetscCall(PetscSpaceSetNumComponents(Pside, 1)); 1935 PetscCall(PetscSpaceSetNumVariables(Pside, 1)); 1936 PetscCall(PetscSpaceSetDegree(Pside, degree, PETSC_DETERMINE)); 1937 PetscCall(PetscSpaceSetType(P, PETSCSPACETENSOR)); 1938 PetscCall(PetscSpaceTensorSetNumSubspaces(P, 2)); 1939 PetscCall(PetscSpaceTensorSetSubspace(P, 0, Pend)); 1940 PetscCall(PetscSpaceTensorSetSubspace(P, 1, Pside)); 1941 PetscCall(PetscSpaceDestroy(&Pend)); 1942 PetscCall(PetscSpaceDestroy(&Pside)); 1943 } 1944 } 1945 if (setFromOptions) PetscCall(PetscSpaceSetFromOptions(P)); 1946 PetscCall(PetscSpaceSetUp(P)); 1947 PetscCall(PetscSpaceGetDegree(P, °ree, NULL)); 1948 PetscCall(PetscSpacePolynomialGetTensor(P, &tensor)); 1949 PetscCall(PetscSpaceGetNumComponents(P, &Nc)); 1950 /* Create dual space */ 1951 PetscCall(PetscDualSpaceCreate(comm, &Q)); 1952 PetscCall(PetscDualSpaceSetType(Q, PETSCDUALSPACELAGRANGE)); 1953 PetscCall(PetscObjectSetOptionsPrefix((PetscObject)Q, prefix)); 1954 PetscCall(DMPlexCreateReferenceCell(PETSC_COMM_SELF, ct, &K)); 1955 PetscCall(PetscDualSpaceSetDM(Q, K)); 1956 PetscCall(DMDestroy(&K)); 1957 PetscCall(PetscDualSpaceSetNumComponents(Q, Nc)); 1958 PetscCall(PetscDualSpaceSetOrder(Q, degree)); 1959 /* TODO For some reason, we need a tensor dualspace with wedges */ 1960 PetscCall(PetscDualSpaceLagrangeSetTensor(Q, (tensor || (ct == DM_POLYTOPE_TRI_PRISM)) ? PETSC_TRUE : PETSC_FALSE)); 1961 if (setFromOptions) PetscCall(PetscDualSpaceSetFromOptions(Q)); 1962 PetscCall(PetscDualSpaceSetUp(Q)); 1963 /* Create quadrature */ 1964 qorder = qorder >= 0 ? qorder : degree; 1965 if (setFromOptions) { 1966 PetscObjectOptionsBegin((PetscObject)P); 1967 PetscCall(PetscOptionsBoundedInt("-petscfe_default_quadrature_order", "Quadrature order is one less than quadrature points per edge", "PetscFECreateDefault", qorder, &qorder, NULL, 0)); 1968 PetscOptionsEnd(); 1969 } 1970 PetscCall(PetscDTCreateDefaultQuadrature(ct, qorder, &q, &fq)); 1971 /* Create finite element */ 1972 PetscCall(PetscFECreateFromSpaces(P, Q, q, fq, fem)); 1973 if (setFromOptions) PetscCall(PetscFESetFromOptions(*fem)); 1974 PetscFunctionReturn(PETSC_SUCCESS); 1975 } 1976 1977 /*@C 1978 PetscFECreateDefault - Create a `PetscFE` for basic FEM computation 1979 1980 Collective 1981 1982 Input Parameters: 1983 + comm - The MPI comm 1984 . dim - The spatial dimension 1985 . Nc - The number of components 1986 . isSimplex - Flag for simplex reference cell, otherwise its a tensor product 1987 . prefix - The options prefix, or `NULL` 1988 - qorder - The quadrature order or `PETSC_DETERMINE` to use `PetscSpace` polynomial degree 1989 1990 Output Parameter: 1991 . fem - The `PetscFE` object 1992 1993 Level: beginner 1994 1995 Note: 1996 Each subobject is SetFromOption() during creation, so that the object may be customized from the command line, using the prefix specified above. See the links below for the particular options available. 1997 1998 .seealso: `PetscFECreateLagrange()`, `PetscFECreateByCell()`, `PetscSpaceSetFromOptions()`, `PetscDualSpaceSetFromOptions()`, `PetscFESetFromOptions()`, `PetscFECreate()`, `PetscSpaceCreate()`, `PetscDualSpaceCreate()` 1999 @*/ 2000 PetscErrorCode PetscFECreateDefault(MPI_Comm comm, PetscInt dim, PetscInt Nc, PetscBool isSimplex, const char prefix[], PetscInt qorder, PetscFE *fem) 2001 { 2002 PetscFunctionBegin; 2003 PetscCall(PetscFECreate_Internal(comm, dim, Nc, DMPolytopeTypeSimpleShape(dim, isSimplex), prefix, PETSC_DECIDE, qorder, PETSC_TRUE, fem)); 2004 PetscFunctionReturn(PETSC_SUCCESS); 2005 } 2006 2007 /*@C 2008 PetscFECreateByCell - Create a `PetscFE` for basic FEM computation 2009 2010 Collective 2011 2012 Input Parameters: 2013 + comm - The MPI comm 2014 . dim - The spatial dimension 2015 . Nc - The number of components 2016 . ct - The celltype of the reference cell 2017 . prefix - The options prefix, or `NULL` 2018 - qorder - The quadrature order or `PETSC_DETERMINE` to use `PetscSpace` polynomial degree 2019 2020 Output Parameter: 2021 . fem - The `PetscFE` object 2022 2023 Level: beginner 2024 2025 Note: 2026 Each subobject is SetFromOption() during creation, so that the object may be customized from the command line, using the prefix specified above. See the links below for the particular options available. 2027 2028 .seealso: `PetscFECreateDefault()`, `PetscFECreateLagrange()`, `PetscSpaceSetFromOptions()`, `PetscDualSpaceSetFromOptions()`, `PetscFESetFromOptions()`, `PetscFECreate()`, `PetscSpaceCreate()`, `PetscDualSpaceCreate()` 2029 @*/ 2030 PetscErrorCode PetscFECreateByCell(MPI_Comm comm, PetscInt dim, PetscInt Nc, DMPolytopeType ct, const char prefix[], PetscInt qorder, PetscFE *fem) 2031 { 2032 PetscFunctionBegin; 2033 PetscCall(PetscFECreate_Internal(comm, dim, Nc, ct, prefix, PETSC_DECIDE, qorder, PETSC_TRUE, fem)); 2034 PetscFunctionReturn(PETSC_SUCCESS); 2035 } 2036 2037 /*@ 2038 PetscFECreateLagrange - Create a `PetscFE` for the basic Lagrange space of degree k 2039 2040 Collective 2041 2042 Input Parameters: 2043 + comm - The MPI comm 2044 . dim - The spatial dimension 2045 . Nc - The number of components 2046 . isSimplex - Flag for simplex reference cell, otherwise its a tensor product 2047 . k - The degree k of the space 2048 - qorder - The quadrature order or `PETSC_DETERMINE` to use `PetscSpace` polynomial degree 2049 2050 Output Parameter: 2051 . fem - The `PetscFE` object 2052 2053 Level: beginner 2054 2055 Note: 2056 For simplices, this element is the space of maximum polynomial degree k, otherwise it is a tensor product of 1D polynomials, each with maximal degree k. 2057 2058 .seealso: `PetscFECreateLagrangeByCell()`, `PetscFECreateDefault()`, `PetscFECreateByCell()`, `PetscFECreate()`, `PetscSpaceCreate()`, `PetscDualSpaceCreate()` 2059 @*/ 2060 PetscErrorCode PetscFECreateLagrange(MPI_Comm comm, PetscInt dim, PetscInt Nc, PetscBool isSimplex, PetscInt k, PetscInt qorder, PetscFE *fem) 2061 { 2062 PetscFunctionBegin; 2063 PetscCall(PetscFECreate_Internal(comm, dim, Nc, DMPolytopeTypeSimpleShape(dim, isSimplex), NULL, k, qorder, PETSC_FALSE, fem)); 2064 PetscFunctionReturn(PETSC_SUCCESS); 2065 } 2066 2067 /*@ 2068 PetscFECreateLagrangeByCell - Create a `PetscFE` for the basic Lagrange space of degree k 2069 2070 Collective 2071 2072 Input Parameters: 2073 + comm - The MPI comm 2074 . dim - The spatial dimension 2075 . Nc - The number of components 2076 . ct - The celltype of the reference cell 2077 . k - The degree k of the space 2078 - qorder - The quadrature order or `PETSC_DETERMINE` to use `PetscSpace` polynomial degree 2079 2080 Output Parameter: 2081 . fem - The `PetscFE` object 2082 2083 Level: beginner 2084 2085 Note: 2086 For simplices, this element is the space of maximum polynomial degree k, otherwise it is a tensor product of 1D polynomials, each with maximal degree k. 2087 2088 .seealso: `PetscFECreateLagrange()`, `PetscFECreateDefault()`, `PetscFECreateByCell()`, `PetscFECreate()`, `PetscSpaceCreate()`, `PetscDualSpaceCreate()` 2089 @*/ 2090 PetscErrorCode PetscFECreateLagrangeByCell(MPI_Comm comm, PetscInt dim, PetscInt Nc, DMPolytopeType ct, PetscInt k, PetscInt qorder, PetscFE *fem) 2091 { 2092 PetscFunctionBegin; 2093 PetscCall(PetscFECreate_Internal(comm, dim, Nc, ct, NULL, k, qorder, PETSC_FALSE, fem)); 2094 PetscFunctionReturn(PETSC_SUCCESS); 2095 } 2096 2097 /*@C 2098 PetscFESetName - Names the `PetscFE` and its subobjects 2099 2100 Not Collective 2101 2102 Input Parameters: 2103 + fe - The `PetscFE` 2104 - name - The name 2105 2106 Level: intermediate 2107 2108 .seealso: `PetscFECreate()`, `PetscSpaceCreate()`, `PetscDualSpaceCreate()` 2109 @*/ 2110 PetscErrorCode PetscFESetName(PetscFE fe, const char name[]) 2111 { 2112 PetscSpace P; 2113 PetscDualSpace Q; 2114 2115 PetscFunctionBegin; 2116 PetscCall(PetscFEGetBasisSpace(fe, &P)); 2117 PetscCall(PetscFEGetDualSpace(fe, &Q)); 2118 PetscCall(PetscObjectSetName((PetscObject)fe, name)); 2119 PetscCall(PetscObjectSetName((PetscObject)P, name)); 2120 PetscCall(PetscObjectSetName((PetscObject)Q, name)); 2121 PetscFunctionReturn(PETSC_SUCCESS); 2122 } 2123 2124 PetscErrorCode PetscFEEvaluateFieldJets_Internal(PetscDS ds, PetscInt Nf, PetscInt r, PetscInt q, PetscTabulation T[], PetscFEGeom *fegeom, const PetscScalar coefficients[], const PetscScalar coefficients_t[], PetscScalar u[], PetscScalar u_x[], PetscScalar u_t[]) 2125 { 2126 PetscInt dOffset = 0, fOffset = 0, f, g; 2127 2128 for (f = 0; f < Nf; ++f) { 2129 PetscCheck(r < T[f]->Nr, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Replica number %" PetscInt_FMT " should be in [0, %" PetscInt_FMT ")", r, T[f]->Nr); 2130 PetscCheck(q < T[f]->Np, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Point number %" PetscInt_FMT " should be in [0, %" PetscInt_FMT ")", q, T[f]->Np); 2131 PetscFE fe; 2132 const PetscInt k = ds->jetDegree[f]; 2133 const PetscInt cdim = T[f]->cdim; 2134 const PetscInt dE = fegeom->dimEmbed; 2135 const PetscInt Nq = T[f]->Np; 2136 const PetscInt Nbf = T[f]->Nb; 2137 const PetscInt Ncf = T[f]->Nc; 2138 const PetscReal *Bq = &T[f]->T[0][(r * Nq + q) * Nbf * Ncf]; 2139 const PetscReal *Dq = &T[f]->T[1][(r * Nq + q) * Nbf * Ncf * cdim]; 2140 const PetscReal *Hq = k > 1 ? &T[f]->T[2][(r * Nq + q) * Nbf * Ncf * cdim * cdim] : NULL; 2141 PetscInt hOffset = 0, b, c, d; 2142 2143 PetscCall(PetscDSGetDiscretization(ds, f, (PetscObject *)&fe)); 2144 for (c = 0; c < Ncf; ++c) u[fOffset + c] = 0.0; 2145 for (d = 0; d < dE * Ncf; ++d) u_x[fOffset * dE + d] = 0.0; 2146 for (b = 0; b < Nbf; ++b) { 2147 for (c = 0; c < Ncf; ++c) { 2148 const PetscInt cidx = b * Ncf + c; 2149 2150 u[fOffset + c] += Bq[cidx] * coefficients[dOffset + b]; 2151 for (d = 0; d < cdim; ++d) u_x[(fOffset + c) * dE + d] += Dq[cidx * cdim + d] * coefficients[dOffset + b]; 2152 } 2153 } 2154 if (k > 1) { 2155 for (g = 0; g < Nf; ++g) hOffset += T[g]->Nc * dE; 2156 for (d = 0; d < dE * dE * Ncf; ++d) u_x[hOffset + fOffset * dE * dE + d] = 0.0; 2157 for (b = 0; b < Nbf; ++b) { 2158 for (c = 0; c < Ncf; ++c) { 2159 const PetscInt cidx = b * Ncf + c; 2160 2161 for (d = 0; d < cdim * cdim; ++d) u_x[hOffset + (fOffset + c) * dE * dE + d] += Hq[cidx * cdim * cdim + d] * coefficients[dOffset + b]; 2162 } 2163 } 2164 PetscCall(PetscFEPushforwardHessian(fe, fegeom, 1, &u_x[hOffset + fOffset * dE * dE])); 2165 } 2166 PetscCall(PetscFEPushforward(fe, fegeom, 1, &u[fOffset])); 2167 PetscCall(PetscFEPushforwardGradient(fe, fegeom, 1, &u_x[fOffset * dE])); 2168 if (u_t) { 2169 for (c = 0; c < Ncf; ++c) u_t[fOffset + c] = 0.0; 2170 for (b = 0; b < Nbf; ++b) { 2171 for (c = 0; c < Ncf; ++c) { 2172 const PetscInt cidx = b * Ncf + c; 2173 2174 u_t[fOffset + c] += Bq[cidx] * coefficients_t[dOffset + b]; 2175 } 2176 } 2177 PetscCall(PetscFEPushforward(fe, fegeom, 1, &u_t[fOffset])); 2178 } 2179 fOffset += Ncf; 2180 dOffset += Nbf; 2181 } 2182 return PETSC_SUCCESS; 2183 } 2184 2185 PetscErrorCode PetscFEEvaluateFieldJets_Hybrid_Internal(PetscDS ds, PetscInt Nf, PetscInt rc, PetscInt qc, PetscTabulation Tab[], const PetscInt rf[], const PetscInt qf[], PetscTabulation Tabf[], PetscFEGeom *fegeom, const PetscScalar coefficients[], const PetscScalar coefficients_t[], PetscScalar u[], PetscScalar u_x[], PetscScalar u_t[]) 2186 { 2187 PetscInt dOffset = 0, fOffset = 0, f, g; 2188 2189 /* f is the field number in the DS, g is the field number in u[] */ 2190 for (f = 0, g = 0; f < Nf; ++f) { 2191 PetscBool isCohesive; 2192 PetscInt Ns, s; 2193 2194 if (!Tab[f]) continue; 2195 PetscCall(PetscDSGetCohesive(ds, f, &isCohesive)); 2196 Ns = isCohesive ? 1 : 2; 2197 { 2198 PetscTabulation T = isCohesive ? Tab[f] : Tabf[f]; 2199 PetscFE fe = (PetscFE)ds->disc[f]; 2200 const PetscInt dEt = T->cdim; 2201 const PetscInt dE = fegeom->dimEmbed; 2202 const PetscInt Nq = T->Np; 2203 const PetscInt Nbf = T->Nb; 2204 const PetscInt Ncf = T->Nc; 2205 2206 for (s = 0; s < Ns; ++s, ++g) { 2207 const PetscInt r = isCohesive ? rc : rf[s]; 2208 const PetscInt q = isCohesive ? qc : qf[s]; 2209 const PetscReal *Bq = &T->T[0][(r * Nq + q) * Nbf * Ncf]; 2210 const PetscReal *Dq = &T->T[1][(r * Nq + q) * Nbf * Ncf * dEt]; 2211 PetscInt b, c, d; 2212 2213 PetscCheck(r < T->Nr, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Field %" PetscInt_FMT " Side %" PetscInt_FMT " Replica number %" PetscInt_FMT " should be in [0, %" PetscInt_FMT ")", f, s, r, T->Nr); 2214 PetscCheck(q < T->Np, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Field %" PetscInt_FMT " Side %" PetscInt_FMT " Point number %" PetscInt_FMT " should be in [0, %" PetscInt_FMT ")", f, s, q, T->Np); 2215 for (c = 0; c < Ncf; ++c) u[fOffset + c] = 0.0; 2216 for (d = 0; d < dE * Ncf; ++d) u_x[fOffset * dE + d] = 0.0; 2217 for (b = 0; b < Nbf; ++b) { 2218 for (c = 0; c < Ncf; ++c) { 2219 const PetscInt cidx = b * Ncf + c; 2220 2221 u[fOffset + c] += Bq[cidx] * coefficients[dOffset + b]; 2222 for (d = 0; d < dEt; ++d) u_x[(fOffset + c) * dE + d] += Dq[cidx * dEt + d] * coefficients[dOffset + b]; 2223 } 2224 } 2225 PetscCall(PetscFEPushforward(fe, fegeom, 1, &u[fOffset])); 2226 PetscCall(PetscFEPushforwardGradient(fe, fegeom, 1, &u_x[fOffset * dE])); 2227 if (u_t) { 2228 for (c = 0; c < Ncf; ++c) u_t[fOffset + c] = 0.0; 2229 for (b = 0; b < Nbf; ++b) { 2230 for (c = 0; c < Ncf; ++c) { 2231 const PetscInt cidx = b * Ncf + c; 2232 2233 u_t[fOffset + c] += Bq[cidx] * coefficients_t[dOffset + b]; 2234 } 2235 } 2236 PetscCall(PetscFEPushforward(fe, fegeom, 1, &u_t[fOffset])); 2237 } 2238 fOffset += Ncf; 2239 dOffset += Nbf; 2240 } 2241 } 2242 } 2243 return PETSC_SUCCESS; 2244 } 2245 2246 PetscErrorCode PetscFEEvaluateFaceFields_Internal(PetscDS prob, PetscInt field, PetscInt faceLoc, const PetscScalar coefficients[], PetscScalar u[]) 2247 { 2248 PetscFE fe; 2249 PetscTabulation Tc; 2250 PetscInt b, c; 2251 2252 if (!prob) return PETSC_SUCCESS; 2253 PetscCall(PetscDSGetDiscretization(prob, field, (PetscObject *)&fe)); 2254 PetscCall(PetscFEGetFaceCentroidTabulation(fe, &Tc)); 2255 { 2256 const PetscReal *faceBasis = Tc->T[0]; 2257 const PetscInt Nb = Tc->Nb; 2258 const PetscInt Nc = Tc->Nc; 2259 2260 for (c = 0; c < Nc; ++c) u[c] = 0.0; 2261 for (b = 0; b < Nb; ++b) { 2262 for (c = 0; c < Nc; ++c) u[c] += coefficients[b] * faceBasis[(faceLoc * Nb + b) * Nc + c]; 2263 } 2264 } 2265 return PETSC_SUCCESS; 2266 } 2267 2268 PetscErrorCode PetscFEUpdateElementVec_Internal(PetscFE fe, PetscTabulation T, PetscInt r, PetscScalar tmpBasis[], PetscScalar tmpBasisDer[], PetscInt e, PetscFEGeom *fegeom, PetscScalar f0[], PetscScalar f1[], PetscScalar elemVec[]) 2269 { 2270 PetscFEGeom pgeom; 2271 const PetscInt dEt = T->cdim; 2272 const PetscInt dE = fegeom->dimEmbed; 2273 const PetscInt Nq = T->Np; 2274 const PetscInt Nb = T->Nb; 2275 const PetscInt Nc = T->Nc; 2276 const PetscReal *basis = &T->T[0][r * Nq * Nb * Nc]; 2277 const PetscReal *basisDer = &T->T[1][r * Nq * Nb * Nc * dEt]; 2278 PetscInt q, b, c, d; 2279 2280 for (q = 0; q < Nq; ++q) { 2281 for (b = 0; b < Nb; ++b) { 2282 for (c = 0; c < Nc; ++c) { 2283 const PetscInt bcidx = b * Nc + c; 2284 2285 tmpBasis[bcidx] = basis[q * Nb * Nc + bcidx]; 2286 for (d = 0; d < dEt; ++d) tmpBasisDer[bcidx * dE + d] = basisDer[q * Nb * Nc * dEt + bcidx * dEt + d]; 2287 for (d = dEt; d < dE; ++d) tmpBasisDer[bcidx * dE + d] = 0.0; 2288 } 2289 } 2290 PetscCall(PetscFEGeomGetCellPoint(fegeom, e, q, &pgeom)); 2291 PetscCall(PetscFEPushforward(fe, &pgeom, Nb, tmpBasis)); 2292 PetscCall(PetscFEPushforwardGradient(fe, &pgeom, Nb, tmpBasisDer)); 2293 for (b = 0; b < Nb; ++b) { 2294 for (c = 0; c < Nc; ++c) { 2295 const PetscInt bcidx = b * Nc + c; 2296 const PetscInt qcidx = q * Nc + c; 2297 2298 elemVec[b] += tmpBasis[bcidx] * f0[qcidx]; 2299 for (d = 0; d < dE; ++d) elemVec[b] += tmpBasisDer[bcidx * dE + d] * f1[qcidx * dE + d]; 2300 } 2301 } 2302 } 2303 return PETSC_SUCCESS; 2304 } 2305 2306 PetscErrorCode PetscFEUpdateElementVec_Hybrid_Internal(PetscFE fe, PetscTabulation T, PetscInt r, PetscInt s, PetscScalar tmpBasis[], PetscScalar tmpBasisDer[], PetscFEGeom *fegeom, PetscScalar f0[], PetscScalar f1[], PetscScalar elemVec[]) 2307 { 2308 const PetscInt dE = T->cdim; 2309 const PetscInt Nq = T->Np; 2310 const PetscInt Nb = T->Nb; 2311 const PetscInt Nc = T->Nc; 2312 const PetscReal *basis = &T->T[0][r * Nq * Nb * Nc]; 2313 const PetscReal *basisDer = &T->T[1][r * Nq * Nb * Nc * dE]; 2314 PetscInt q, b, c, d; 2315 2316 for (q = 0; q < Nq; ++q) { 2317 for (b = 0; b < Nb; ++b) { 2318 for (c = 0; c < Nc; ++c) { 2319 const PetscInt bcidx = b * Nc + c; 2320 2321 tmpBasis[bcidx] = basis[q * Nb * Nc + bcidx]; 2322 for (d = 0; d < dE; ++d) tmpBasisDer[bcidx * dE + d] = basisDer[q * Nb * Nc * dE + bcidx * dE + d]; 2323 } 2324 } 2325 PetscCall(PetscFEPushforward(fe, fegeom, Nb, tmpBasis)); 2326 // TODO This is currently broken since we do not pull the geometry down to the lower dimension 2327 // PetscCall(PetscFEPushforwardGradient(fe, fegeom, Nb, tmpBasisDer)); 2328 for (b = 0; b < Nb; ++b) { 2329 for (c = 0; c < Nc; ++c) { 2330 const PetscInt bcidx = b * Nc + c; 2331 const PetscInt qcidx = q * Nc + c; 2332 2333 elemVec[Nb * s + b] += tmpBasis[bcidx] * f0[qcidx]; 2334 for (d = 0; d < dE; ++d) elemVec[Nb * s + b] += tmpBasisDer[bcidx * dE + d] * f1[qcidx * dE + d]; 2335 } 2336 } 2337 } 2338 return PETSC_SUCCESS; 2339 } 2340 2341 PetscErrorCode PetscFEUpdateElementMat_Internal(PetscFE feI, PetscFE feJ, PetscInt r, PetscInt q, PetscTabulation TI, PetscScalar tmpBasisI[], PetscScalar tmpBasisDerI[], PetscTabulation TJ, PetscScalar tmpBasisJ[], PetscScalar tmpBasisDerJ[], PetscFEGeom *fegeom, const PetscScalar g0[], const PetscScalar g1[], const PetscScalar g2[], const PetscScalar g3[], PetscInt eOffset, PetscInt totDim, PetscInt offsetI, PetscInt offsetJ, PetscScalar elemMat[]) 2342 { 2343 const PetscInt cdim = TI->cdim; 2344 const PetscInt dE = fegeom->dimEmbed; 2345 const PetscInt NqI = TI->Np; 2346 const PetscInt NbI = TI->Nb; 2347 const PetscInt NcI = TI->Nc; 2348 const PetscReal *basisI = &TI->T[0][(r * NqI + q) * NbI * NcI]; 2349 const PetscReal *basisDerI = &TI->T[1][(r * NqI + q) * NbI * NcI * cdim]; 2350 const PetscInt NqJ = TJ->Np; 2351 const PetscInt NbJ = TJ->Nb; 2352 const PetscInt NcJ = TJ->Nc; 2353 const PetscReal *basisJ = &TJ->T[0][(r * NqJ + q) * NbJ * NcJ]; 2354 const PetscReal *basisDerJ = &TJ->T[1][(r * NqJ + q) * NbJ * NcJ * cdim]; 2355 PetscInt f, fc, g, gc, df, dg; 2356 2357 for (f = 0; f < NbI; ++f) { 2358 for (fc = 0; fc < NcI; ++fc) { 2359 const PetscInt fidx = f * NcI + fc; /* Test function basis index */ 2360 2361 tmpBasisI[fidx] = basisI[fidx]; 2362 for (df = 0; df < cdim; ++df) tmpBasisDerI[fidx * dE + df] = basisDerI[fidx * cdim + df]; 2363 } 2364 } 2365 PetscCall(PetscFEPushforward(feI, fegeom, NbI, tmpBasisI)); 2366 PetscCall(PetscFEPushforwardGradient(feI, fegeom, NbI, tmpBasisDerI)); 2367 for (g = 0; g < NbJ; ++g) { 2368 for (gc = 0; gc < NcJ; ++gc) { 2369 const PetscInt gidx = g * NcJ + gc; /* Trial function basis index */ 2370 2371 tmpBasisJ[gidx] = basisJ[gidx]; 2372 for (dg = 0; dg < cdim; ++dg) tmpBasisDerJ[gidx * dE + dg] = basisDerJ[gidx * cdim + dg]; 2373 } 2374 } 2375 PetscCall(PetscFEPushforward(feJ, fegeom, NbJ, tmpBasisJ)); 2376 PetscCall(PetscFEPushforwardGradient(feJ, fegeom, NbJ, tmpBasisDerJ)); 2377 for (f = 0; f < NbI; ++f) { 2378 for (fc = 0; fc < NcI; ++fc) { 2379 const PetscInt fidx = f * NcI + fc; /* Test function basis index */ 2380 const PetscInt i = offsetI + f; /* Element matrix row */ 2381 for (g = 0; g < NbJ; ++g) { 2382 for (gc = 0; gc < NcJ; ++gc) { 2383 const PetscInt gidx = g * NcJ + gc; /* Trial function basis index */ 2384 const PetscInt j = offsetJ + g; /* Element matrix column */ 2385 const PetscInt fOff = eOffset + i * totDim + j; 2386 2387 elemMat[fOff] += tmpBasisI[fidx] * g0[fc * NcJ + gc] * tmpBasisJ[gidx]; 2388 for (df = 0; df < dE; ++df) { 2389 elemMat[fOff] += tmpBasisI[fidx] * g1[(fc * NcJ + gc) * dE + df] * tmpBasisDerJ[gidx * dE + df]; 2390 elemMat[fOff] += tmpBasisDerI[fidx * dE + df] * g2[(fc * NcJ + gc) * dE + df] * tmpBasisJ[gidx]; 2391 for (dg = 0; dg < dE; ++dg) elemMat[fOff] += tmpBasisDerI[fidx * dE + df] * g3[((fc * NcJ + gc) * dE + df) * dE + dg] * tmpBasisDerJ[gidx * dE + dg]; 2392 } 2393 } 2394 } 2395 } 2396 } 2397 return PETSC_SUCCESS; 2398 } 2399 2400 PetscErrorCode PetscFEUpdateElementMat_Hybrid_Internal(PetscFE feI, PetscBool isHybridI, PetscFE feJ, PetscBool isHybridJ, PetscInt r, PetscInt s, PetscInt q, PetscTabulation TI, PetscScalar tmpBasisI[], PetscScalar tmpBasisDerI[], PetscTabulation TJ, PetscScalar tmpBasisJ[], PetscScalar tmpBasisDerJ[], PetscFEGeom *fegeom, const PetscScalar g0[], const PetscScalar g1[], const PetscScalar g2[], const PetscScalar g3[], PetscInt eOffset, PetscInt totDim, PetscInt offsetI, PetscInt offsetJ, PetscScalar elemMat[]) 2401 { 2402 const PetscInt dE = TI->cdim; 2403 const PetscInt NqI = TI->Np; 2404 const PetscInt NbI = TI->Nb; 2405 const PetscInt NcI = TI->Nc; 2406 const PetscReal *basisI = &TI->T[0][(r * NqI + q) * NbI * NcI]; 2407 const PetscReal *basisDerI = &TI->T[1][(r * NqI + q) * NbI * NcI * dE]; 2408 const PetscInt NqJ = TJ->Np; 2409 const PetscInt NbJ = TJ->Nb; 2410 const PetscInt NcJ = TJ->Nc; 2411 const PetscReal *basisJ = &TJ->T[0][(r * NqJ + q) * NbJ * NcJ]; 2412 const PetscReal *basisDerJ = &TJ->T[1][(r * NqJ + q) * NbJ * NcJ * dE]; 2413 const PetscInt so = isHybridI ? 0 : s; 2414 const PetscInt to = isHybridJ ? 0 : s; 2415 PetscInt f, fc, g, gc, df, dg; 2416 2417 for (f = 0; f < NbI; ++f) { 2418 for (fc = 0; fc < NcI; ++fc) { 2419 const PetscInt fidx = f * NcI + fc; /* Test function basis index */ 2420 2421 tmpBasisI[fidx] = basisI[fidx]; 2422 for (df = 0; df < dE; ++df) tmpBasisDerI[fidx * dE + df] = basisDerI[fidx * dE + df]; 2423 } 2424 } 2425 PetscCall(PetscFEPushforward(feI, fegeom, NbI, tmpBasisI)); 2426 PetscCall(PetscFEPushforwardGradient(feI, fegeom, NbI, tmpBasisDerI)); 2427 for (g = 0; g < NbJ; ++g) { 2428 for (gc = 0; gc < NcJ; ++gc) { 2429 const PetscInt gidx = g * NcJ + gc; /* Trial function basis index */ 2430 2431 tmpBasisJ[gidx] = basisJ[gidx]; 2432 for (dg = 0; dg < dE; ++dg) tmpBasisDerJ[gidx * dE + dg] = basisDerJ[gidx * dE + dg]; 2433 } 2434 } 2435 PetscCall(PetscFEPushforward(feJ, fegeom, NbJ, tmpBasisJ)); 2436 // TODO This is currently broken since we do not pull the geometry down to the lower dimension 2437 // PetscCall(PetscFEPushforwardGradient(feJ, fegeom, NbJ, tmpBasisDerJ)); 2438 for (f = 0; f < NbI; ++f) { 2439 for (fc = 0; fc < NcI; ++fc) { 2440 const PetscInt fidx = f * NcI + fc; /* Test function basis index */ 2441 const PetscInt i = offsetI + NbI * so + f; /* Element matrix row */ 2442 for (g = 0; g < NbJ; ++g) { 2443 for (gc = 0; gc < NcJ; ++gc) { 2444 const PetscInt gidx = g * NcJ + gc; /* Trial function basis index */ 2445 const PetscInt j = offsetJ + NbJ * to + g; /* Element matrix column */ 2446 const PetscInt fOff = eOffset + i * totDim + j; 2447 2448 elemMat[fOff] += tmpBasisI[fidx] * g0[fc * NcJ + gc] * tmpBasisJ[gidx]; 2449 for (df = 0; df < dE; ++df) { 2450 elemMat[fOff] += tmpBasisI[fidx] * g1[(fc * NcJ + gc) * dE + df] * tmpBasisDerJ[gidx * dE + df]; 2451 elemMat[fOff] += tmpBasisDerI[fidx * dE + df] * g2[(fc * NcJ + gc) * dE + df] * tmpBasisJ[gidx]; 2452 for (dg = 0; dg < dE; ++dg) elemMat[fOff] += tmpBasisDerI[fidx * dE + df] * g3[((fc * NcJ + gc) * dE + df) * dE + dg] * tmpBasisDerJ[gidx * dE + dg]; 2453 } 2454 } 2455 } 2456 } 2457 } 2458 return PETSC_SUCCESS; 2459 } 2460 2461 PetscErrorCode PetscFECreateCellGeometry(PetscFE fe, PetscQuadrature quad, PetscFEGeom *cgeom) 2462 { 2463 PetscDualSpace dsp; 2464 DM dm; 2465 PetscQuadrature quadDef; 2466 PetscInt dim, cdim, Nq; 2467 2468 PetscFunctionBegin; 2469 PetscCall(PetscFEGetDualSpace(fe, &dsp)); 2470 PetscCall(PetscDualSpaceGetDM(dsp, &dm)); 2471 PetscCall(DMGetDimension(dm, &dim)); 2472 PetscCall(DMGetCoordinateDim(dm, &cdim)); 2473 PetscCall(PetscFEGetQuadrature(fe, &quadDef)); 2474 quad = quad ? quad : quadDef; 2475 PetscCall(PetscQuadratureGetData(quad, NULL, NULL, &Nq, NULL, NULL)); 2476 PetscCall(PetscMalloc1(Nq * cdim, &cgeom->v)); 2477 PetscCall(PetscMalloc1(Nq * cdim * cdim, &cgeom->J)); 2478 PetscCall(PetscMalloc1(Nq * cdim * cdim, &cgeom->invJ)); 2479 PetscCall(PetscMalloc1(Nq, &cgeom->detJ)); 2480 cgeom->dim = dim; 2481 cgeom->dimEmbed = cdim; 2482 cgeom->numCells = 1; 2483 cgeom->numPoints = Nq; 2484 PetscCall(DMPlexComputeCellGeometryFEM(dm, 0, quad, cgeom->v, cgeom->J, cgeom->invJ, cgeom->detJ)); 2485 PetscFunctionReturn(PETSC_SUCCESS); 2486 } 2487 2488 PetscErrorCode PetscFEDestroyCellGeometry(PetscFE fe, PetscFEGeom *cgeom) 2489 { 2490 PetscFunctionBegin; 2491 PetscCall(PetscFree(cgeom->v)); 2492 PetscCall(PetscFree(cgeom->J)); 2493 PetscCall(PetscFree(cgeom->invJ)); 2494 PetscCall(PetscFree(cgeom->detJ)); 2495 PetscFunctionReturn(PETSC_SUCCESS); 2496 } 2497