1 /* Basis Jet Tabulation 2 3 We would like to tabulate the nodal basis functions and derivatives at a set of points, usually quadrature points. We 4 follow here the derviation in http://www.math.ttu.edu/~kirby/papers/fiat-toms-2004.pdf. The nodal basis $\psi_i$ can 5 be expressed in terms of a prime basis $\phi_i$ which can be stably evaluated. In PETSc, we will use the Legendre basis 6 as a prime basis. 7 8 \psi_i = \sum_k \alpha_{ki} \phi_k 9 10 Our nodal basis is defined in terms of the dual basis $n_j$ 11 12 n_j \cdot \psi_i = \delta_{ji} 13 14 and we may act on the first equation to obtain 15 16 n_j \cdot \psi_i = \sum_k \alpha_{ki} n_j \cdot \phi_k 17 \delta_{ji} = \sum_k \alpha_{ki} V_{jk} 18 I = V \alpha 19 20 so the coefficients of the nodal basis in the prime basis are 21 22 \alpha = V^{-1} 23 24 We will define the dual basis vectors $n_j$ using a quadrature rule. 25 26 Right now, we will just use the polynomial spaces P^k. I know some elements use the space of symmetric polynomials 27 (I think Nedelec), but we will neglect this for now. Constraints in the space, e.g. Arnold-Winther elements, can 28 be implemented exactly as in FIAT using functionals $L_j$. 29 30 I will have to count the degrees correctly for the Legendre product when we are on simplices. 31 32 We will have three objects: 33 - Space, P: this just need point evaluation I think 34 - Dual Space, P'+K: This looks like a set of functionals that can act on members of P, each n is defined by a Q 35 - FEM: This keeps {P, P', Q} 36 */ 37 #include <petsc/private/petscfeimpl.h> /*I "petscfe.h" I*/ 38 #include <petscdmplex.h> 39 40 PetscBool FEcite = PETSC_FALSE; 41 const char FECitation[] = "@article{kirby2004,\n" 42 " title = {Algorithm 839: FIAT, a New Paradigm for Computing Finite Element Basis Functions},\n" 43 " journal = {ACM Transactions on Mathematical Software},\n" 44 " author = {Robert C. Kirby},\n" 45 " volume = {30},\n" 46 " number = {4},\n" 47 " pages = {502--516},\n" 48 " doi = {10.1145/1039813.1039820},\n" 49 " year = {2004}\n}\n"; 50 51 PetscClassId PETSCFE_CLASSID = 0; 52 53 PetscLogEvent PETSCFE_SetUp; 54 55 PetscFunctionList PetscFEList = NULL; 56 PetscBool PetscFERegisterAllCalled = PETSC_FALSE; 57 58 /*@C 59 PetscFERegister - Adds a new `PetscFEType` 60 61 Not Collective, No Fortran Support 62 63 Input Parameters: 64 + sname - The name of a new user-defined creation routine 65 - function - The creation routine 66 67 Example Usage: 68 .vb 69 PetscFERegister("my_fe", MyPetscFECreate); 70 .ve 71 72 Then, your PetscFE type can be chosen with the procedural interface via 73 .vb 74 PetscFECreate(MPI_Comm, PetscFE *); 75 PetscFESetType(PetscFE, "my_fe"); 76 .ve 77 or at runtime via the option 78 .vb 79 -petscfe_type my_fe 80 .ve 81 82 Level: advanced 83 84 Note: 85 `PetscFERegister()` may be called multiple times to add several user-defined `PetscFE`s 86 87 .seealso: `PetscFE`, `PetscFEType`, `PetscFERegisterAll()`, `PetscFERegisterDestroy()` 88 @*/ 89 PetscErrorCode PetscFERegister(const char sname[], PetscErrorCode (*function)(PetscFE)) 90 { 91 PetscFunctionBegin; 92 PetscCall(PetscFunctionListAdd(&PetscFEList, sname, function)); 93 PetscFunctionReturn(PETSC_SUCCESS); 94 } 95 96 /*@ 97 PetscFESetType - Builds a particular `PetscFE` 98 99 Collective 100 101 Input Parameters: 102 + fem - The `PetscFE` object 103 - name - The kind of FEM space 104 105 Options Database Key: 106 . -petscfe_type <type> - Sets the `PetscFE` type; use -help for a list of available types 107 108 Level: intermediate 109 110 .seealso: `PetscFEType`, `PetscFE`, `PetscFEGetType()`, `PetscFECreate()` 111 @*/ 112 PetscErrorCode PetscFESetType(PetscFE fem, PetscFEType name) 113 { 114 PetscErrorCode (*r)(PetscFE); 115 PetscBool match; 116 117 PetscFunctionBegin; 118 PetscValidHeaderSpecific(fem, PETSCFE_CLASSID, 1); 119 PetscCall(PetscObjectTypeCompare((PetscObject)fem, name, &match)); 120 if (match) PetscFunctionReturn(PETSC_SUCCESS); 121 122 if (!PetscFERegisterAllCalled) PetscCall(PetscFERegisterAll()); 123 PetscCall(PetscFunctionListFind(PetscFEList, name, &r)); 124 PetscCheck(r, PetscObjectComm((PetscObject)fem), PETSC_ERR_ARG_UNKNOWN_TYPE, "Unknown PetscFE type: %s", name); 125 126 PetscTryTypeMethod(fem, destroy); 127 fem->ops->destroy = NULL; 128 129 PetscCall((*r)(fem)); 130 PetscCall(PetscObjectChangeTypeName((PetscObject)fem, name)); 131 PetscFunctionReturn(PETSC_SUCCESS); 132 } 133 134 /*@ 135 PetscFEGetType - Gets the `PetscFEType` (as a string) from the `PetscFE` object. 136 137 Not Collective 138 139 Input Parameter: 140 . fem - The `PetscFE` 141 142 Output Parameter: 143 . name - The `PetscFEType` name 144 145 Level: intermediate 146 147 .seealso: `PetscFEType`, `PetscFE`, `PetscFESetType()`, `PetscFECreate()` 148 @*/ 149 PetscErrorCode PetscFEGetType(PetscFE fem, PetscFEType *name) 150 { 151 PetscFunctionBegin; 152 PetscValidHeaderSpecific(fem, PETSCFE_CLASSID, 1); 153 PetscAssertPointer(name, 2); 154 if (!PetscFERegisterAllCalled) PetscCall(PetscFERegisterAll()); 155 *name = ((PetscObject)fem)->type_name; 156 PetscFunctionReturn(PETSC_SUCCESS); 157 } 158 159 /*@ 160 PetscFEViewFromOptions - View from a `PetscFE` based on values in the options database 161 162 Collective 163 164 Input Parameters: 165 + A - the `PetscFE` object 166 . obj - Optional object that provides the options prefix, pass `NULL` to use the options prefix of `A` 167 - name - command line option name 168 169 Level: intermediate 170 171 .seealso: `PetscFE`, `PetscFEView()`, `PetscObjectViewFromOptions()`, `PetscFECreate()` 172 @*/ 173 PetscErrorCode PetscFEViewFromOptions(PetscFE A, PeOp PetscObject obj, const char name[]) 174 { 175 PetscFunctionBegin; 176 PetscValidHeaderSpecific(A, PETSCFE_CLASSID, 1); 177 PetscCall(PetscObjectViewFromOptions((PetscObject)A, obj, name)); 178 PetscFunctionReturn(PETSC_SUCCESS); 179 } 180 181 /*@ 182 PetscFEView - Views a `PetscFE` 183 184 Collective 185 186 Input Parameters: 187 + fem - the `PetscFE` object to view 188 - viewer - the viewer 189 190 Level: beginner 191 192 .seealso: `PetscFE`, `PetscViewer`, `PetscFEDestroy()`, `PetscFEViewFromOptions()` 193 @*/ 194 PetscErrorCode PetscFEView(PetscFE fem, PetscViewer viewer) 195 { 196 PetscBool iascii; 197 198 PetscFunctionBegin; 199 PetscValidHeaderSpecific(fem, PETSCFE_CLASSID, 1); 200 if (viewer) PetscValidHeaderSpecific(viewer, PETSC_VIEWER_CLASSID, 2); 201 if (!viewer) PetscCall(PetscViewerASCIIGetStdout(PetscObjectComm((PetscObject)fem), &viewer)); 202 PetscCall(PetscObjectPrintClassNamePrefixType((PetscObject)fem, viewer)); 203 PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERASCII, &iascii)); 204 PetscTryTypeMethod(fem, view, viewer); 205 PetscFunctionReturn(PETSC_SUCCESS); 206 } 207 208 /*@ 209 PetscFESetFromOptions - sets parameters in a `PetscFE` from the options database 210 211 Collective 212 213 Input Parameter: 214 . fem - the `PetscFE` object to set options for 215 216 Options Database Keys: 217 + -petscfe_num_blocks - the number of cell blocks to integrate concurrently 218 - -petscfe_num_batches - the number of cell batches to integrate serially 219 220 Level: intermediate 221 222 .seealso: `PetscFE`, `PetscFEView()` 223 @*/ 224 PetscErrorCode PetscFESetFromOptions(PetscFE fem) 225 { 226 const char *defaultType; 227 char name[256]; 228 PetscBool flg; 229 230 PetscFunctionBegin; 231 PetscValidHeaderSpecific(fem, PETSCFE_CLASSID, 1); 232 if (!((PetscObject)fem)->type_name) { 233 defaultType = PETSCFEBASIC; 234 } else { 235 defaultType = ((PetscObject)fem)->type_name; 236 } 237 if (!PetscFERegisterAllCalled) PetscCall(PetscFERegisterAll()); 238 239 PetscObjectOptionsBegin((PetscObject)fem); 240 PetscCall(PetscOptionsFList("-petscfe_type", "Finite element space", "PetscFESetType", PetscFEList, defaultType, name, 256, &flg)); 241 if (flg) { 242 PetscCall(PetscFESetType(fem, name)); 243 } else if (!((PetscObject)fem)->type_name) { 244 PetscCall(PetscFESetType(fem, defaultType)); 245 } 246 PetscCall(PetscOptionsBoundedInt("-petscfe_num_blocks", "The number of cell blocks to integrate concurrently", "PetscSpaceSetTileSizes", fem->numBlocks, &fem->numBlocks, NULL, 1)); 247 PetscCall(PetscOptionsBoundedInt("-petscfe_num_batches", "The number of cell batches to integrate serially", "PetscSpaceSetTileSizes", fem->numBatches, &fem->numBatches, NULL, 1)); 248 PetscTryTypeMethod(fem, setfromoptions, PetscOptionsObject); 249 /* process any options handlers added with PetscObjectAddOptionsHandler() */ 250 PetscCall(PetscObjectProcessOptionsHandlers((PetscObject)fem, PetscOptionsObject)); 251 PetscOptionsEnd(); 252 PetscCall(PetscFEViewFromOptions(fem, NULL, "-petscfe_view")); 253 PetscFunctionReturn(PETSC_SUCCESS); 254 } 255 256 /*@ 257 PetscFESetUp - Construct data structures for the `PetscFE` after the `PetscFEType` has been set 258 259 Collective 260 261 Input Parameter: 262 . fem - the `PetscFE` object to setup 263 264 Level: intermediate 265 266 .seealso: `PetscFE`, `PetscFEView()`, `PetscFEDestroy()` 267 @*/ 268 PetscErrorCode PetscFESetUp(PetscFE fem) 269 { 270 PetscFunctionBegin; 271 PetscValidHeaderSpecific(fem, PETSCFE_CLASSID, 1); 272 if (fem->setupcalled) PetscFunctionReturn(PETSC_SUCCESS); 273 PetscCall(PetscLogEventBegin(PETSCFE_SetUp, fem, 0, 0, 0)); 274 fem->setupcalled = PETSC_TRUE; 275 PetscTryTypeMethod(fem, setup); 276 PetscCall(PetscLogEventEnd(PETSCFE_SetUp, fem, 0, 0, 0)); 277 PetscFunctionReturn(PETSC_SUCCESS); 278 } 279 280 /*@ 281 PetscFEDestroy - Destroys a `PetscFE` object 282 283 Collective 284 285 Input Parameter: 286 . fem - the `PetscFE` object to destroy 287 288 Level: beginner 289 290 .seealso: `PetscFE`, `PetscFEView()` 291 @*/ 292 PetscErrorCode PetscFEDestroy(PetscFE *fem) 293 { 294 PetscFunctionBegin; 295 if (!*fem) PetscFunctionReturn(PETSC_SUCCESS); 296 PetscValidHeaderSpecific(*fem, PETSCFE_CLASSID, 1); 297 298 if (--((PetscObject)*fem)->refct > 0) { 299 *fem = NULL; 300 PetscFunctionReturn(PETSC_SUCCESS); 301 } 302 ((PetscObject)*fem)->refct = 0; 303 304 if ((*fem)->subspaces) { 305 PetscInt dim, d; 306 307 PetscCall(PetscDualSpaceGetDimension((*fem)->dualSpace, &dim)); 308 for (d = 0; d < dim; ++d) PetscCall(PetscFEDestroy(&(*fem)->subspaces[d])); 309 } 310 PetscCall(PetscFree((*fem)->subspaces)); 311 PetscCall(PetscFree((*fem)->invV)); 312 PetscCall(PetscTabulationDestroy(&(*fem)->T)); 313 PetscCall(PetscTabulationDestroy(&(*fem)->Tf)); 314 PetscCall(PetscTabulationDestroy(&(*fem)->Tc)); 315 PetscCall(PetscSpaceDestroy(&(*fem)->basisSpace)); 316 PetscCall(PetscDualSpaceDestroy(&(*fem)->dualSpace)); 317 PetscCall(PetscQuadratureDestroy(&(*fem)->quadrature)); 318 PetscCall(PetscQuadratureDestroy(&(*fem)->faceQuadrature)); 319 #ifdef PETSC_HAVE_LIBCEED 320 PetscCallCEED(CeedBasisDestroy(&(*fem)->ceedBasis)); 321 PetscCallCEED(CeedDestroy(&(*fem)->ceed)); 322 #endif 323 324 PetscTryTypeMethod(*fem, destroy); 325 PetscCall(PetscHeaderDestroy(fem)); 326 PetscFunctionReturn(PETSC_SUCCESS); 327 } 328 329 /*@ 330 PetscFECreate - Creates an empty `PetscFE` object. The type can then be set with `PetscFESetType()`. 331 332 Collective 333 334 Input Parameter: 335 . comm - The communicator for the `PetscFE` object 336 337 Output Parameter: 338 . fem - The `PetscFE` object 339 340 Level: beginner 341 342 .seealso: `PetscFE`, `PetscFEType`, `PetscFESetType()`, `PetscFECreateDefault()`, `PETSCFEGALERKIN` 343 @*/ 344 PetscErrorCode PetscFECreate(MPI_Comm comm, PetscFE *fem) 345 { 346 PetscFE f; 347 348 PetscFunctionBegin; 349 PetscAssertPointer(fem, 2); 350 PetscCall(PetscCitationsRegister(FECitation, &FEcite)); 351 PetscCall(PetscFEInitializePackage()); 352 353 PetscCall(PetscHeaderCreate(f, PETSCFE_CLASSID, "PetscFE", "Finite Element", "PetscFE", comm, PetscFEDestroy, PetscFEView)); 354 355 f->basisSpace = NULL; 356 f->dualSpace = NULL; 357 f->numComponents = 1; 358 f->subspaces = NULL; 359 f->invV = NULL; 360 f->T = NULL; 361 f->Tf = NULL; 362 f->Tc = NULL; 363 PetscCall(PetscArrayzero(&f->quadrature, 1)); 364 PetscCall(PetscArrayzero(&f->faceQuadrature, 1)); 365 f->blockSize = 0; 366 f->numBlocks = 1; 367 f->batchSize = 0; 368 f->numBatches = 1; 369 370 *fem = f; 371 PetscFunctionReturn(PETSC_SUCCESS); 372 } 373 374 /*@ 375 PetscFEGetSpatialDimension - Returns the spatial dimension of the element 376 377 Not Collective 378 379 Input Parameter: 380 . fem - The `PetscFE` object 381 382 Output Parameter: 383 . dim - The spatial dimension 384 385 Level: intermediate 386 387 .seealso: `PetscFE`, `PetscFECreate()` 388 @*/ 389 PetscErrorCode PetscFEGetSpatialDimension(PetscFE fem, PetscInt *dim) 390 { 391 DM dm; 392 393 PetscFunctionBegin; 394 PetscValidHeaderSpecific(fem, PETSCFE_CLASSID, 1); 395 PetscAssertPointer(dim, 2); 396 PetscCall(PetscDualSpaceGetDM(fem->dualSpace, &dm)); 397 PetscCall(DMGetDimension(dm, dim)); 398 PetscFunctionReturn(PETSC_SUCCESS); 399 } 400 401 /*@ 402 PetscFESetNumComponents - Sets the number of field components in the element 403 404 Not Collective 405 406 Input Parameters: 407 + fem - The `PetscFE` object 408 - comp - The number of field components 409 410 Level: intermediate 411 412 .seealso: `PetscFE`, `PetscFECreate()`, `PetscFEGetSpatialDimension()`, `PetscFEGetNumComponents()` 413 @*/ 414 PetscErrorCode PetscFESetNumComponents(PetscFE fem, PetscInt comp) 415 { 416 PetscFunctionBegin; 417 PetscValidHeaderSpecific(fem, PETSCFE_CLASSID, 1); 418 fem->numComponents = comp; 419 PetscFunctionReturn(PETSC_SUCCESS); 420 } 421 422 /*@ 423 PetscFEGetNumComponents - Returns the number of components in the element 424 425 Not Collective 426 427 Input Parameter: 428 . fem - The `PetscFE` object 429 430 Output Parameter: 431 . comp - The number of field components 432 433 Level: intermediate 434 435 .seealso: `PetscFE`, `PetscFECreate()`, `PetscFEGetSpatialDimension()` 436 @*/ 437 PetscErrorCode PetscFEGetNumComponents(PetscFE fem, PetscInt *comp) 438 { 439 PetscFunctionBegin; 440 PetscValidHeaderSpecific(fem, PETSCFE_CLASSID, 1); 441 PetscAssertPointer(comp, 2); 442 *comp = fem->numComponents; 443 PetscFunctionReturn(PETSC_SUCCESS); 444 } 445 446 /*@ 447 PetscFESetTileSizes - Sets the tile sizes for evaluation 448 449 Not Collective 450 451 Input Parameters: 452 + fem - The `PetscFE` object 453 . blockSize - The number of elements in a block 454 . numBlocks - The number of blocks in a batch 455 . batchSize - The number of elements in a batch 456 - numBatches - The number of batches in a chunk 457 458 Level: intermediate 459 460 .seealso: `PetscFE`, `PetscFECreate()`, `PetscFEGetTileSizes()` 461 @*/ 462 PetscErrorCode PetscFESetTileSizes(PetscFE fem, PetscInt blockSize, PetscInt numBlocks, PetscInt batchSize, PetscInt numBatches) 463 { 464 PetscFunctionBegin; 465 PetscValidHeaderSpecific(fem, PETSCFE_CLASSID, 1); 466 fem->blockSize = blockSize; 467 fem->numBlocks = numBlocks; 468 fem->batchSize = batchSize; 469 fem->numBatches = numBatches; 470 PetscFunctionReturn(PETSC_SUCCESS); 471 } 472 473 /*@ 474 PetscFEGetTileSizes - Returns the tile sizes for evaluation 475 476 Not Collective 477 478 Input Parameter: 479 . fem - The `PetscFE` object 480 481 Output Parameters: 482 + blockSize - The number of elements in a block, pass `NULL` if not needed 483 . numBlocks - The number of blocks in a batch, pass `NULL` if not needed 484 . batchSize - The number of elements in a batch, pass `NULL` if not needed 485 - numBatches - The number of batches in a chunk, pass `NULL` if not needed 486 487 Level: intermediate 488 489 .seealso: `PetscFE`, `PetscFECreate()`, `PetscFESetTileSizes()` 490 @*/ 491 PetscErrorCode PetscFEGetTileSizes(PetscFE fem, PeOp PetscInt *blockSize, PeOp PetscInt *numBlocks, PeOp PetscInt *batchSize, PeOp PetscInt *numBatches) 492 { 493 PetscFunctionBegin; 494 PetscValidHeaderSpecific(fem, PETSCFE_CLASSID, 1); 495 if (blockSize) PetscAssertPointer(blockSize, 2); 496 if (numBlocks) PetscAssertPointer(numBlocks, 3); 497 if (batchSize) PetscAssertPointer(batchSize, 4); 498 if (numBatches) PetscAssertPointer(numBatches, 5); 499 if (blockSize) *blockSize = fem->blockSize; 500 if (numBlocks) *numBlocks = fem->numBlocks; 501 if (batchSize) *batchSize = fem->batchSize; 502 if (numBatches) *numBatches = fem->numBatches; 503 PetscFunctionReturn(PETSC_SUCCESS); 504 } 505 506 /*@ 507 PetscFEGetBasisSpace - Returns the `PetscSpace` used for the approximation of the solution for the `PetscFE` 508 509 Not Collective 510 511 Input Parameter: 512 . fem - The `PetscFE` object 513 514 Output Parameter: 515 . sp - The `PetscSpace` object 516 517 Level: intermediate 518 519 .seealso: `PetscFE`, `PetscSpace`, `PetscFECreate()` 520 @*/ 521 PetscErrorCode PetscFEGetBasisSpace(PetscFE fem, PetscSpace *sp) 522 { 523 PetscFunctionBegin; 524 PetscValidHeaderSpecific(fem, PETSCFE_CLASSID, 1); 525 PetscAssertPointer(sp, 2); 526 *sp = fem->basisSpace; 527 PetscFunctionReturn(PETSC_SUCCESS); 528 } 529 530 /*@ 531 PetscFESetBasisSpace - Sets the `PetscSpace` used for the approximation of the solution 532 533 Not Collective 534 535 Input Parameters: 536 + fem - The `PetscFE` object 537 - sp - The `PetscSpace` object 538 539 Level: intermediate 540 541 Developer Notes: 542 There is `PetscFESetBasisSpace()` but the `PetscFESetDualSpace()`, likely the Basis is unneeded in the function name 543 544 .seealso: `PetscFE`, `PetscSpace`, `PetscDualSpace`, `PetscFECreate()`, `PetscFESetDualSpace()` 545 @*/ 546 PetscErrorCode PetscFESetBasisSpace(PetscFE fem, PetscSpace sp) 547 { 548 PetscFunctionBegin; 549 PetscValidHeaderSpecific(fem, PETSCFE_CLASSID, 1); 550 PetscValidHeaderSpecific(sp, PETSCSPACE_CLASSID, 2); 551 PetscCall(PetscSpaceDestroy(&fem->basisSpace)); 552 fem->basisSpace = sp; 553 PetscCall(PetscObjectReference((PetscObject)fem->basisSpace)); 554 PetscFunctionReturn(PETSC_SUCCESS); 555 } 556 557 /*@ 558 PetscFEGetDualSpace - Returns the `PetscDualSpace` used to define the inner product for a `PetscFE` 559 560 Not Collective 561 562 Input Parameter: 563 . fem - The `PetscFE` object 564 565 Output Parameter: 566 . sp - The `PetscDualSpace` object 567 568 Level: intermediate 569 570 .seealso: `PetscFE`, `PetscSpace`, `PetscDualSpace`, `PetscFECreate()` 571 @*/ 572 PetscErrorCode PetscFEGetDualSpace(PetscFE fem, PetscDualSpace *sp) 573 { 574 PetscFunctionBegin; 575 PetscValidHeaderSpecific(fem, PETSCFE_CLASSID, 1); 576 PetscAssertPointer(sp, 2); 577 *sp = fem->dualSpace; 578 PetscFunctionReturn(PETSC_SUCCESS); 579 } 580 581 /*@ 582 PetscFESetDualSpace - Sets the `PetscDualSpace` used to define the inner product 583 584 Not Collective 585 586 Input Parameters: 587 + fem - The `PetscFE` object 588 - sp - The `PetscDualSpace` object 589 590 Level: intermediate 591 592 .seealso: `PetscFE`, `PetscSpace`, `PetscDualSpace`, `PetscFECreate()`, `PetscFESetBasisSpace()` 593 @*/ 594 PetscErrorCode PetscFESetDualSpace(PetscFE fem, PetscDualSpace sp) 595 { 596 PetscFunctionBegin; 597 PetscValidHeaderSpecific(fem, PETSCFE_CLASSID, 1); 598 PetscValidHeaderSpecific(sp, PETSCDUALSPACE_CLASSID, 2); 599 PetscCall(PetscDualSpaceDestroy(&fem->dualSpace)); 600 fem->dualSpace = sp; 601 PetscCall(PetscObjectReference((PetscObject)fem->dualSpace)); 602 PetscFunctionReturn(PETSC_SUCCESS); 603 } 604 605 /*@ 606 PetscFEGetQuadrature - Returns the `PetscQuadrature` used to calculate inner products 607 608 Not Collective 609 610 Input Parameter: 611 . fem - The `PetscFE` object 612 613 Output Parameter: 614 . q - The `PetscQuadrature` object 615 616 Level: intermediate 617 618 .seealso: `PetscFE`, `PetscSpace`, `PetscDualSpace`, `PetscQuadrature`, `PetscFECreate()` 619 @*/ 620 PetscErrorCode PetscFEGetQuadrature(PetscFE fem, PetscQuadrature *q) 621 { 622 PetscFunctionBegin; 623 PetscValidHeaderSpecific(fem, PETSCFE_CLASSID, 1); 624 PetscAssertPointer(q, 2); 625 *q = fem->quadrature; 626 PetscFunctionReturn(PETSC_SUCCESS); 627 } 628 629 /*@ 630 PetscFESetQuadrature - Sets the `PetscQuadrature` used to calculate inner products 631 632 Not Collective 633 634 Input Parameters: 635 + fem - The `PetscFE` object 636 - q - The `PetscQuadrature` object 637 638 Level: intermediate 639 640 .seealso: `PetscFE`, `PetscSpace`, `PetscDualSpace`, `PetscQuadrature`, `PetscFECreate()`, `PetscFEGetFaceQuadrature()` 641 @*/ 642 PetscErrorCode PetscFESetQuadrature(PetscFE fem, PetscQuadrature q) 643 { 644 PetscInt Nc, qNc; 645 646 PetscFunctionBegin; 647 PetscValidHeaderSpecific(fem, PETSCFE_CLASSID, 1); 648 if (q == fem->quadrature) PetscFunctionReturn(PETSC_SUCCESS); 649 PetscCall(PetscFEGetNumComponents(fem, &Nc)); 650 PetscCall(PetscQuadratureGetNumComponents(q, &qNc)); 651 PetscCheck(!(qNc != 1) || !(Nc != qNc), PetscObjectComm((PetscObject)fem), PETSC_ERR_ARG_SIZ, "FE components %" PetscInt_FMT " != Quadrature components %" PetscInt_FMT " and non-scalar quadrature", Nc, qNc); 652 PetscCall(PetscTabulationDestroy(&fem->T)); 653 PetscCall(PetscTabulationDestroy(&fem->Tc)); 654 PetscCall(PetscObjectReference((PetscObject)q)); 655 PetscCall(PetscQuadratureDestroy(&fem->quadrature)); 656 fem->quadrature = q; 657 PetscFunctionReturn(PETSC_SUCCESS); 658 } 659 660 /*@ 661 PetscFEGetFaceQuadrature - Returns the `PetscQuadrature` used to calculate inner products on faces 662 663 Not Collective 664 665 Input Parameter: 666 . fem - The `PetscFE` object 667 668 Output Parameter: 669 . q - The `PetscQuadrature` object 670 671 Level: intermediate 672 673 Developer Notes: 674 There is a special face quadrature but not edge, likely this API would benefit from a refactorization 675 676 .seealso: `PetscFE`, `PetscSpace`, `PetscDualSpace`, `PetscQuadrature`, `PetscFECreate()`, `PetscFESetQuadrature()`, `PetscFESetFaceQuadrature()` 677 @*/ 678 PetscErrorCode PetscFEGetFaceQuadrature(PetscFE fem, PetscQuadrature *q) 679 { 680 PetscFunctionBegin; 681 PetscValidHeaderSpecific(fem, PETSCFE_CLASSID, 1); 682 PetscAssertPointer(q, 2); 683 *q = fem->faceQuadrature; 684 PetscFunctionReturn(PETSC_SUCCESS); 685 } 686 687 /*@ 688 PetscFESetFaceQuadrature - Sets the `PetscQuadrature` used to calculate inner products on faces 689 690 Not Collective 691 692 Input Parameters: 693 + fem - The `PetscFE` object 694 - q - The `PetscQuadrature` object 695 696 Level: intermediate 697 698 .seealso: `PetscFE`, `PetscSpace`, `PetscDualSpace`, `PetscQuadrature`, `PetscFECreate()`, `PetscFESetQuadrature()` 699 @*/ 700 PetscErrorCode PetscFESetFaceQuadrature(PetscFE fem, PetscQuadrature q) 701 { 702 PetscInt Nc, qNc; 703 704 PetscFunctionBegin; 705 PetscValidHeaderSpecific(fem, PETSCFE_CLASSID, 1); 706 if (q == fem->faceQuadrature) PetscFunctionReturn(PETSC_SUCCESS); 707 PetscCall(PetscFEGetNumComponents(fem, &Nc)); 708 PetscCall(PetscQuadratureGetNumComponents(q, &qNc)); 709 PetscCheck(!(qNc != 1) || !(Nc != qNc), PetscObjectComm((PetscObject)fem), PETSC_ERR_ARG_SIZ, "FE components %" PetscInt_FMT " != Quadrature components %" PetscInt_FMT " and non-scalar quadrature", Nc, qNc); 710 PetscCall(PetscTabulationDestroy(&fem->Tf)); 711 PetscCall(PetscObjectReference((PetscObject)q)); 712 PetscCall(PetscQuadratureDestroy(&fem->faceQuadrature)); 713 fem->faceQuadrature = q; 714 PetscFunctionReturn(PETSC_SUCCESS); 715 } 716 717 /*@ 718 PetscFECopyQuadrature - Copy both volumetric and surface quadrature to a new `PetscFE` 719 720 Not Collective 721 722 Input Parameters: 723 + sfe - The `PetscFE` source for the quadratures 724 - tfe - The `PetscFE` target for the quadratures 725 726 Level: intermediate 727 728 .seealso: `PetscFE`, `PetscSpace`, `PetscDualSpace`, `PetscQuadrature`, `PetscFECreate()`, `PetscFESetQuadrature()`, `PetscFESetFaceQuadrature()` 729 @*/ 730 PetscErrorCode PetscFECopyQuadrature(PetscFE sfe, PetscFE tfe) 731 { 732 PetscQuadrature q; 733 734 PetscFunctionBegin; 735 PetscValidHeaderSpecific(sfe, PETSCFE_CLASSID, 1); 736 PetscValidHeaderSpecific(tfe, PETSCFE_CLASSID, 2); 737 PetscCall(PetscFEGetQuadrature(sfe, &q)); 738 PetscCall(PetscFESetQuadrature(tfe, q)); 739 PetscCall(PetscFEGetFaceQuadrature(sfe, &q)); 740 PetscCall(PetscFESetFaceQuadrature(tfe, q)); 741 PetscFunctionReturn(PETSC_SUCCESS); 742 } 743 744 /*@C 745 PetscFEGetNumDof - Returns the number of dofs (dual basis vectors) associated to mesh points on the reference cell of a given dimension 746 747 Not Collective 748 749 Input Parameter: 750 . fem - The `PetscFE` object 751 752 Output Parameter: 753 . numDof - Array of length `dim` with the number of dofs in each dimension 754 755 Level: intermediate 756 757 .seealso: `PetscFE`, `PetscSpace`, `PetscDualSpace`, `PetscFECreate()` 758 @*/ 759 PetscErrorCode PetscFEGetNumDof(PetscFE fem, const PetscInt *numDof[]) 760 { 761 PetscFunctionBegin; 762 PetscValidHeaderSpecific(fem, PETSCFE_CLASSID, 1); 763 PetscAssertPointer(numDof, 2); 764 PetscCall(PetscDualSpaceGetNumDof(fem->dualSpace, numDof)); 765 PetscFunctionReturn(PETSC_SUCCESS); 766 } 767 768 /*@C 769 PetscFEGetCellTabulation - Returns the tabulation of the basis functions at the quadrature points on the reference cell 770 771 Not Collective 772 773 Input Parameters: 774 + fem - The `PetscFE` object 775 - k - The highest derivative we need to tabulate, very often 1 776 777 Output Parameter: 778 . T - The basis function values and derivatives at quadrature points 779 780 Level: intermediate 781 782 Note: 783 .vb 784 T->T[0] = B[(p*pdim + i)*Nc + c] is the value at point p for basis function i and component c 785 T->T[1] = D[((p*pdim + i)*Nc + c)*dim + d] is the derivative value at point p for basis function i, component c, in direction d 786 T->T[2] = H[(((p*pdim + i)*Nc + c)*dim + d)*dim + e] is the value at point p for basis function i, component c, in directions d and e 787 .ve 788 789 .seealso: `PetscFE`, `PetscSpace`, `PetscDualSpace`, `PetscTabulation`, `PetscFECreateTabulation()`, `PetscTabulationDestroy()` 790 @*/ 791 PetscErrorCode PetscFEGetCellTabulation(PetscFE fem, PetscInt k, PetscTabulation *T) 792 { 793 PetscInt npoints; 794 const PetscReal *points; 795 796 PetscFunctionBegin; 797 PetscValidHeaderSpecific(fem, PETSCFE_CLASSID, 1); 798 PetscAssertPointer(T, 3); 799 PetscCall(PetscQuadratureGetData(fem->quadrature, NULL, NULL, &npoints, &points, NULL)); 800 if (!fem->T) PetscCall(PetscFECreateTabulation(fem, 1, npoints, points, k, &fem->T)); 801 PetscCheck(!fem->T || k <= fem->T->K || (!fem->T->cdim && !fem->T->K), PetscObjectComm((PetscObject)fem), PETSC_ERR_ARG_OUTOFRANGE, "Requested %" PetscInt_FMT " derivatives, but only tabulated %" PetscInt_FMT, k, fem->T->K); 802 *T = fem->T; 803 PetscFunctionReturn(PETSC_SUCCESS); 804 } 805 806 PetscErrorCode PetscFEExpandFaceQuadrature(PetscFE fe, PetscQuadrature fq, PetscQuadrature *efq) 807 { 808 DM dm; 809 PetscDualSpace sp; 810 const PetscInt *faces; 811 const PetscReal *points, *weights; 812 DMPolytopeType ct; 813 PetscReal *facePoints, *faceWeights; 814 PetscInt dim, cStart, Nf, Nc, Np, order; 815 816 PetscFunctionBegin; 817 PetscCall(PetscFEGetDualSpace(fe, &sp)); 818 PetscCall(PetscDualSpaceGetDM(sp, &dm)); 819 PetscCall(DMGetDimension(dm, &dim)); 820 PetscCall(DMPlexGetHeightStratum(dm, 0, &cStart, NULL)); 821 PetscCall(DMPlexGetConeSize(dm, cStart, &Nf)); 822 PetscCall(DMPlexGetCone(dm, cStart, &faces)); 823 PetscCall(PetscQuadratureGetData(fq, NULL, &Nc, &Np, &points, &weights)); 824 PetscCall(PetscMalloc1(Nf * Np * dim, &facePoints)); 825 PetscCall(PetscMalloc1(Nf * Np * Nc, &faceWeights)); 826 for (PetscInt f = 0; f < Nf; ++f) { 827 const PetscReal xi0[3] = {-1., -1., -1.}; 828 PetscReal v0[3], J[9], detJ; 829 830 PetscCall(DMPlexComputeCellGeometryFEM(dm, faces[f], NULL, v0, J, NULL, &detJ)); 831 for (PetscInt q = 0; q < Np; ++q) { 832 CoordinatesRefToReal(dim, dim - 1, xi0, v0, J, &points[q * (dim - 1)], &facePoints[(f * Np + q) * dim]); 833 for (PetscInt c = 0; c < Nc; ++c) faceWeights[(f * Np + q) * Nc + c] = weights[q * Nc + c]; 834 } 835 } 836 PetscCall(PetscQuadratureCreate(PetscObjectComm((PetscObject)fq), efq)); 837 PetscCall(PetscQuadratureGetCellType(fq, &ct)); 838 PetscCall(PetscQuadratureSetCellType(*efq, ct)); 839 PetscCall(PetscQuadratureGetOrder(fq, &order)); 840 PetscCall(PetscQuadratureSetOrder(*efq, order)); 841 PetscCall(PetscQuadratureSetData(*efq, dim, Nc, Nf * Np, facePoints, faceWeights)); 842 PetscFunctionReturn(PETSC_SUCCESS); 843 } 844 845 /*@C 846 PetscFEGetFaceTabulation - Returns the tabulation of the basis functions at the face quadrature points for each face of the reference cell 847 848 Not Collective 849 850 Input Parameters: 851 + fem - The `PetscFE` object 852 - k - The highest derivative we need to tabulate, very often 1 853 854 Output Parameter: 855 . Tf - The basis function values and derivatives at face quadrature points 856 857 Level: intermediate 858 859 Note: 860 .vb 861 T->T[0] = Bf[((f*Nq + q)*pdim + i)*Nc + c] is the value at point f,q for basis function i and component c 862 T->T[1] = Df[(((f*Nq + q)*pdim + i)*Nc + c)*dim + d] is the derivative value at point f,q for basis function i, component c, in direction d 863 T->T[2] = Hf[((((f*Nq + q)*pdim + i)*Nc + c)*dim + d)*dim + e] is the value at point f,q for basis function i, component c, in directions d and e 864 .ve 865 866 .seealso: `PetscFE`, `PetscSpace`, `PetscDualSpace`, `PetscTabulation`, `PetscFEGetCellTabulation()`, `PetscFECreateTabulation()`, `PetscTabulationDestroy()` 867 @*/ 868 PetscErrorCode PetscFEGetFaceTabulation(PetscFE fem, PetscInt k, PetscTabulation *Tf) 869 { 870 PetscFunctionBegin; 871 PetscValidHeaderSpecific(fem, PETSCFE_CLASSID, 1); 872 PetscAssertPointer(Tf, 3); 873 if (!fem->Tf) { 874 PetscQuadrature fq; 875 876 PetscCall(PetscFEGetFaceQuadrature(fem, &fq)); 877 if (fq) { 878 PetscQuadrature efq; 879 const PetscReal *facePoints; 880 PetscInt Np, eNp; 881 882 PetscCall(PetscFEExpandFaceQuadrature(fem, fq, &efq)); 883 PetscCall(PetscQuadratureGetData(fq, NULL, NULL, &Np, NULL, NULL)); 884 PetscCall(PetscQuadratureGetData(efq, NULL, NULL, &eNp, &facePoints, NULL)); 885 if (PetscDefined(USE_DEBUG)) { 886 PetscDualSpace sp; 887 DM dm; 888 PetscInt cStart, Nf; 889 890 PetscCall(PetscFEGetDualSpace(fem, &sp)); 891 PetscCall(PetscDualSpaceGetDM(sp, &dm)); 892 PetscCall(DMPlexGetHeightStratum(dm, 0, &cStart, NULL)); 893 PetscCall(DMPlexGetConeSize(dm, cStart, &Nf)); 894 PetscCheck(Nf == eNp / Np, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Number of faces %" PetscInt_FMT " != %" PetscInt_FMT " number of quadrature replicas", Nf, eNp / Np); 895 } 896 PetscCall(PetscFECreateTabulation(fem, eNp / Np, Np, facePoints, k, &fem->Tf)); 897 PetscCall(PetscQuadratureDestroy(&efq)); 898 } 899 } 900 PetscCheck(!fem->Tf || k <= fem->Tf->K, PetscObjectComm((PetscObject)fem), PETSC_ERR_ARG_OUTOFRANGE, "Requested %" PetscInt_FMT " derivatives, but only tabulated %" PetscInt_FMT, k, fem->Tf->K); 901 *Tf = fem->Tf; 902 PetscFunctionReturn(PETSC_SUCCESS); 903 } 904 905 /*@C 906 PetscFEGetFaceCentroidTabulation - Returns the tabulation of the basis functions at the face centroid points 907 908 Not Collective 909 910 Input Parameter: 911 . fem - The `PetscFE` object 912 913 Output Parameter: 914 . Tc - The basis function values at face centroid points 915 916 Level: intermediate 917 918 Note: 919 .vb 920 T->T[0] = Bf[(f*pdim + i)*Nc + c] is the value at point f for basis function i and component c 921 .ve 922 923 .seealso: `PetscFE`, `PetscSpace`, `PetscDualSpace`, `PetscTabulation`, `PetscFEGetFaceTabulation()`, `PetscFEGetCellTabulation()`, `PetscFECreateTabulation()`, `PetscTabulationDestroy()` 924 @*/ 925 PetscErrorCode PetscFEGetFaceCentroidTabulation(PetscFE fem, PetscTabulation *Tc) 926 { 927 PetscFunctionBegin; 928 PetscValidHeaderSpecific(fem, PETSCFE_CLASSID, 1); 929 PetscAssertPointer(Tc, 2); 930 if (!fem->Tc) { 931 PetscDualSpace sp; 932 DM dm; 933 const PetscInt *cone; 934 PetscReal *centroids; 935 PetscInt dim, numFaces, f; 936 937 PetscCall(PetscFEGetDualSpace(fem, &sp)); 938 PetscCall(PetscDualSpaceGetDM(sp, &dm)); 939 PetscCall(DMGetDimension(dm, &dim)); 940 PetscCall(DMPlexGetConeSize(dm, 0, &numFaces)); 941 PetscCall(DMPlexGetCone(dm, 0, &cone)); 942 PetscCall(PetscMalloc1(numFaces * dim, ¢roids)); 943 for (f = 0; f < numFaces; ++f) PetscCall(DMPlexComputeCellGeometryFVM(dm, cone[f], NULL, ¢roids[f * dim], NULL)); 944 PetscCall(PetscFECreateTabulation(fem, 1, numFaces, centroids, 0, &fem->Tc)); 945 PetscCall(PetscFree(centroids)); 946 } 947 *Tc = fem->Tc; 948 PetscFunctionReturn(PETSC_SUCCESS); 949 } 950 951 /*@C 952 PetscFECreateTabulation - Tabulates the basis functions, and perhaps derivatives, at the points provided. 953 954 Not Collective 955 956 Input Parameters: 957 + fem - The `PetscFE` object 958 . nrepl - The number of replicas 959 . npoints - The number of tabulation points in a replica 960 . points - The tabulation point coordinates 961 - K - The number of derivatives calculated 962 963 Output Parameter: 964 . T - The basis function values and derivatives at tabulation points 965 966 Level: intermediate 967 968 Note: 969 .vb 970 T->T[0] = B[(p*pdim + i)*Nc + c] is the value at point p for basis function i and component c 971 T->T[1] = D[((p*pdim + i)*Nc + c)*dim + d] is the derivative value at point p for basis function i, component c, in direction d 972 T->T[2] = H[(((p*pdim + i)*Nc + c)*dim + d)*dim + e] is the value at point p for basis 973 T->function i, component c, in directions d and e 974 .ve 975 976 .seealso: `PetscTabulation`, `PetscFEGetCellTabulation()`, `PetscTabulationDestroy()` 977 @*/ 978 PetscErrorCode PetscFECreateTabulation(PetscFE fem, PetscInt nrepl, PetscInt npoints, const PetscReal points[], PetscInt K, PetscTabulation *T) 979 { 980 DM dm; 981 PetscDualSpace Q; 982 PetscInt Nb; /* Dimension of FE space P */ 983 PetscInt Nc; /* Field components */ 984 PetscInt cdim; /* Reference coordinate dimension */ 985 PetscInt k; 986 987 PetscFunctionBegin; 988 if (!npoints || !fem->dualSpace || K < 0) { 989 *T = NULL; 990 PetscFunctionReturn(PETSC_SUCCESS); 991 } 992 PetscValidHeaderSpecific(fem, PETSCFE_CLASSID, 1); 993 PetscAssertPointer(points, 4); 994 PetscAssertPointer(T, 6); 995 PetscCall(PetscFEGetDualSpace(fem, &Q)); 996 PetscCall(PetscDualSpaceGetDM(Q, &dm)); 997 PetscCall(DMGetDimension(dm, &cdim)); 998 PetscCall(PetscDualSpaceGetDimension(Q, &Nb)); 999 PetscCall(PetscFEGetNumComponents(fem, &Nc)); 1000 PetscCall(PetscMalloc1(1, T)); 1001 (*T)->K = !cdim ? 0 : K; 1002 (*T)->Nr = nrepl; 1003 (*T)->Np = npoints; 1004 (*T)->Nb = Nb; 1005 (*T)->Nc = Nc; 1006 (*T)->cdim = cdim; 1007 PetscCall(PetscMalloc1((*T)->K + 1, &(*T)->T)); 1008 for (k = 0; k <= (*T)->K; ++k) PetscCall(PetscCalloc1(nrepl * npoints * Nb * Nc * PetscPowInt(cdim, k), &(*T)->T[k])); 1009 PetscUseTypeMethod(fem, computetabulation, nrepl * npoints, points, K, *T); 1010 PetscFunctionReturn(PETSC_SUCCESS); 1011 } 1012 1013 /*@C 1014 PetscFEComputeTabulation - Tabulates the basis functions, and perhaps derivatives, at the points provided. 1015 1016 Not Collective 1017 1018 Input Parameters: 1019 + fem - The `PetscFE` object 1020 . npoints - The number of tabulation points 1021 . points - The tabulation point coordinates 1022 . K - The number of derivatives calculated 1023 - T - An existing tabulation object with enough allocated space 1024 1025 Output Parameter: 1026 . T - The basis function values and derivatives at tabulation points 1027 1028 Level: intermediate 1029 1030 Note: 1031 .vb 1032 T->T[0] = B[(p*pdim + i)*Nc + c] is the value at point p for basis function i and component c 1033 T->T[1] = D[((p*pdim + i)*Nc + c)*dim + d] is the derivative value at point p for basis function i, component c, in direction d 1034 T->T[2] = H[(((p*pdim + i)*Nc + c)*dim + d)*dim + e] is the value at point p for basis function i, component c, in directions d and e 1035 .ve 1036 1037 .seealso: `PetscTabulation`, `PetscFEGetCellTabulation()`, `PetscTabulationDestroy()` 1038 @*/ 1039 PetscErrorCode PetscFEComputeTabulation(PetscFE fem, PetscInt npoints, const PetscReal points[], PetscInt K, PetscTabulation T) 1040 { 1041 PetscFunctionBeginHot; 1042 if (!npoints || !fem->dualSpace || K < 0) PetscFunctionReturn(PETSC_SUCCESS); 1043 PetscValidHeaderSpecific(fem, PETSCFE_CLASSID, 1); 1044 PetscAssertPointer(points, 3); 1045 PetscAssertPointer(T, 5); 1046 if (PetscDefined(USE_DEBUG)) { 1047 DM dm; 1048 PetscDualSpace Q; 1049 PetscInt Nb; /* Dimension of FE space P */ 1050 PetscInt Nc; /* Field components */ 1051 PetscInt cdim; /* Reference coordinate dimension */ 1052 1053 PetscCall(PetscFEGetDualSpace(fem, &Q)); 1054 PetscCall(PetscDualSpaceGetDM(Q, &dm)); 1055 PetscCall(DMGetDimension(dm, &cdim)); 1056 PetscCall(PetscDualSpaceGetDimension(Q, &Nb)); 1057 PetscCall(PetscFEGetNumComponents(fem, &Nc)); 1058 PetscCheck(T->K == (!cdim ? 0 : K), PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Tabulation K %" PetscInt_FMT " must match requested K %" PetscInt_FMT, T->K, !cdim ? 0 : K); 1059 PetscCheck(T->Nb == Nb, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Tabulation Nb %" PetscInt_FMT " must match requested Nb %" PetscInt_FMT, T->Nb, Nb); 1060 PetscCheck(T->Nc == Nc, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Tabulation Nc %" PetscInt_FMT " must match requested Nc %" PetscInt_FMT, T->Nc, Nc); 1061 PetscCheck(T->cdim == cdim, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Tabulation cdim %" PetscInt_FMT " must match requested cdim %" PetscInt_FMT, T->cdim, cdim); 1062 } 1063 T->Nr = 1; 1064 T->Np = npoints; 1065 PetscUseTypeMethod(fem, computetabulation, npoints, points, K, T); 1066 PetscFunctionReturn(PETSC_SUCCESS); 1067 } 1068 1069 /*@ 1070 PetscTabulationDestroy - Frees memory from the associated tabulation. 1071 1072 Not Collective 1073 1074 Input Parameter: 1075 . T - The tabulation 1076 1077 Level: intermediate 1078 1079 .seealso: `PetscTabulation`, `PetscFECreateTabulation()`, `PetscFEGetCellTabulation()` 1080 @*/ 1081 PetscErrorCode PetscTabulationDestroy(PetscTabulation *T) 1082 { 1083 PetscInt k; 1084 1085 PetscFunctionBegin; 1086 PetscAssertPointer(T, 1); 1087 if (!T || !*T) PetscFunctionReturn(PETSC_SUCCESS); 1088 for (k = 0; k <= (*T)->K; ++k) PetscCall(PetscFree((*T)->T[k])); 1089 PetscCall(PetscFree((*T)->T)); 1090 PetscCall(PetscFree(*T)); 1091 *T = NULL; 1092 PetscFunctionReturn(PETSC_SUCCESS); 1093 } 1094 1095 static PetscErrorCode PetscFECreatePointTraceDefault_Internal(PetscFE fe, PetscInt refPoint, PetscFE *trFE) 1096 { 1097 PetscSpace bsp, bsubsp; 1098 PetscDualSpace dsp, dsubsp; 1099 PetscInt dim, depth, numComp, i, j, coneSize, order; 1100 DM dm; 1101 DMLabel label; 1102 PetscReal *xi, *v, *J, detJ; 1103 const char *name; 1104 PetscQuadrature origin, fullQuad, subQuad; 1105 1106 PetscFunctionBegin; 1107 PetscCall(PetscFEGetBasisSpace(fe, &bsp)); 1108 PetscCall(PetscFEGetDualSpace(fe, &dsp)); 1109 PetscCall(PetscDualSpaceGetDM(dsp, &dm)); 1110 PetscCall(DMGetDimension(dm, &dim)); 1111 PetscCall(DMPlexGetDepthLabel(dm, &label)); 1112 PetscCall(DMLabelGetValue(label, refPoint, &depth)); 1113 PetscCall(PetscCalloc1(depth, &xi)); 1114 PetscCall(PetscMalloc1(dim, &v)); 1115 PetscCall(PetscMalloc1(dim * dim, &J)); 1116 for (i = 0; i < depth; i++) xi[i] = 0.; 1117 PetscCall(PetscQuadratureCreate(PETSC_COMM_SELF, &origin)); 1118 PetscCall(PetscQuadratureSetData(origin, depth, 0, 1, xi, NULL)); 1119 PetscCall(DMPlexComputeCellGeometryFEM(dm, refPoint, origin, v, J, NULL, &detJ)); 1120 /* CellGeometryFEM computes the expanded Jacobian, we want the true jacobian */ 1121 for (i = 1; i < dim; i++) { 1122 for (j = 0; j < depth; j++) J[i * depth + j] = J[i * dim + j]; 1123 } 1124 PetscCall(PetscQuadratureDestroy(&origin)); 1125 PetscCall(PetscDualSpaceGetPointSubspace(dsp, refPoint, &dsubsp)); 1126 PetscCall(PetscSpaceCreateSubspace(bsp, dsubsp, v, J, NULL, NULL, PETSC_OWN_POINTER, &bsubsp)); 1127 PetscCall(PetscSpaceSetUp(bsubsp)); 1128 PetscCall(PetscFECreate(PetscObjectComm((PetscObject)fe), trFE)); 1129 PetscCall(PetscFESetType(*trFE, PETSCFEBASIC)); 1130 PetscCall(PetscFEGetNumComponents(fe, &numComp)); 1131 PetscCall(PetscFESetNumComponents(*trFE, numComp)); 1132 PetscCall(PetscFESetBasisSpace(*trFE, bsubsp)); 1133 PetscCall(PetscFESetDualSpace(*trFE, dsubsp)); 1134 PetscCall(PetscObjectGetName((PetscObject)fe, &name)); 1135 if (name) PetscCall(PetscFESetName(*trFE, name)); 1136 PetscCall(PetscFEGetQuadrature(fe, &fullQuad)); 1137 PetscCall(PetscQuadratureGetOrder(fullQuad, &order)); 1138 PetscCall(DMPlexGetConeSize(dm, refPoint, &coneSize)); 1139 if (coneSize == 2 * depth) PetscCall(PetscDTGaussTensorQuadrature(depth, 1, (order + 2) / 2, -1., 1., &subQuad)); 1140 else PetscCall(PetscDTSimplexQuadrature(depth, order, PETSCDTSIMPLEXQUAD_DEFAULT, &subQuad)); 1141 PetscCall(PetscFESetQuadrature(*trFE, subQuad)); 1142 PetscCall(PetscFESetUp(*trFE)); 1143 PetscCall(PetscQuadratureDestroy(&subQuad)); 1144 PetscCall(PetscSpaceDestroy(&bsubsp)); 1145 PetscFunctionReturn(PETSC_SUCCESS); 1146 } 1147 1148 PETSC_EXTERN PetscErrorCode PetscFECreatePointTrace(PetscFE fe, PetscInt refPoint, PetscFE *trFE) 1149 { 1150 PetscFunctionBegin; 1151 PetscValidHeaderSpecific(fe, PETSCFE_CLASSID, 1); 1152 PetscAssertPointer(trFE, 3); 1153 if (fe->ops->createpointtrace) PetscUseTypeMethod(fe, createpointtrace, refPoint, trFE); 1154 else PetscCall(PetscFECreatePointTraceDefault_Internal(fe, refPoint, trFE)); 1155 PetscFunctionReturn(PETSC_SUCCESS); 1156 } 1157 1158 PetscErrorCode PetscFECreateHeightTrace(PetscFE fe, PetscInt height, PetscFE *trFE) 1159 { 1160 PetscInt hStart, hEnd; 1161 PetscDualSpace dsp; 1162 DM dm; 1163 1164 PetscFunctionBegin; 1165 PetscValidHeaderSpecific(fe, PETSCFE_CLASSID, 1); 1166 PetscAssertPointer(trFE, 3); 1167 *trFE = NULL; 1168 PetscCall(PetscFEGetDualSpace(fe, &dsp)); 1169 PetscCall(PetscDualSpaceGetDM(dsp, &dm)); 1170 PetscCall(DMPlexGetHeightStratum(dm, height, &hStart, &hEnd)); 1171 if (hEnd <= hStart) PetscFunctionReturn(PETSC_SUCCESS); 1172 PetscCall(PetscFECreatePointTrace(fe, hStart, trFE)); 1173 PetscFunctionReturn(PETSC_SUCCESS); 1174 } 1175 1176 /*@ 1177 PetscFEGetDimension - Get the dimension of the finite element space on a cell 1178 1179 Not Collective 1180 1181 Input Parameter: 1182 . fem - The `PetscFE` 1183 1184 Output Parameter: 1185 . dim - The dimension 1186 1187 Level: intermediate 1188 1189 .seealso: `PetscFE`, `PetscFECreate()`, `PetscSpaceGetDimension()`, `PetscDualSpaceGetDimension()` 1190 @*/ 1191 PetscErrorCode PetscFEGetDimension(PetscFE fem, PetscInt *dim) 1192 { 1193 PetscFunctionBegin; 1194 PetscValidHeaderSpecific(fem, PETSCFE_CLASSID, 1); 1195 PetscAssertPointer(dim, 2); 1196 PetscTryTypeMethod(fem, getdimension, dim); 1197 PetscFunctionReturn(PETSC_SUCCESS); 1198 } 1199 1200 /*@ 1201 PetscFEPushforward - Map the reference element function to real space 1202 1203 Input Parameters: 1204 + fe - The `PetscFE` 1205 . fegeom - The cell geometry 1206 . Nv - The number of function values 1207 - vals - The function values 1208 1209 Output Parameter: 1210 . vals - The transformed function values 1211 1212 Level: advanced 1213 1214 Notes: 1215 This just forwards the call onto `PetscDualSpacePushforward()`. 1216 1217 It only handles transformations when the embedding dimension of the geometry in fegeom is the same as the reference dimension. 1218 1219 .seealso: `PetscFE`, `PetscFEGeom`, `PetscDualSpace`, `PetscDualSpacePushforward()` 1220 @*/ 1221 PetscErrorCode PetscFEPushforward(PetscFE fe, PetscFEGeom *fegeom, PetscInt Nv, PetscScalar vals[]) 1222 { 1223 PetscFunctionBeginHot; 1224 PetscCall(PetscDualSpacePushforward(fe->dualSpace, fegeom, Nv, fe->numComponents, vals)); 1225 PetscFunctionReturn(PETSC_SUCCESS); 1226 } 1227 1228 /*@ 1229 PetscFEPushforwardGradient - Map the reference element function gradient to real space 1230 1231 Input Parameters: 1232 + fe - The `PetscFE` 1233 . fegeom - The cell geometry 1234 . Nv - The number of function gradient values 1235 - vals - The function gradient values 1236 1237 Output Parameter: 1238 . vals - The transformed function gradient values 1239 1240 Level: advanced 1241 1242 Notes: 1243 This just forwards the call onto `PetscDualSpacePushforwardGradient()`. 1244 1245 It only handles transformations when the embedding dimension of the geometry in fegeom is the same as the reference dimension. 1246 1247 .seealso: `PetscFE`, `PetscFEGeom`, `PetscDualSpace`, `PetscFEPushforward()`, `PetscDualSpacePushforwardGradient()`, `PetscDualSpacePushforward()` 1248 @*/ 1249 PetscErrorCode PetscFEPushforwardGradient(PetscFE fe, PetscFEGeom *fegeom, PetscInt Nv, PetscScalar vals[]) 1250 { 1251 PetscFunctionBeginHot; 1252 PetscCall(PetscDualSpacePushforwardGradient(fe->dualSpace, fegeom, Nv, fe->numComponents, vals)); 1253 PetscFunctionReturn(PETSC_SUCCESS); 1254 } 1255 1256 /*@ 1257 PetscFEPushforwardHessian - Map the reference element function Hessian to real space 1258 1259 Input Parameters: 1260 + fe - The `PetscFE` 1261 . fegeom - The cell geometry 1262 . Nv - The number of function Hessian values 1263 - vals - The function Hessian values 1264 1265 Output Parameter: 1266 . vals - The transformed function Hessian values 1267 1268 Level: advanced 1269 1270 Notes: 1271 This just forwards the call onto `PetscDualSpacePushforwardHessian()`. 1272 1273 It only handles transformations when the embedding dimension of the geometry in fegeom is the same as the reference dimension. 1274 1275 Developer Notes: 1276 It is unclear why all these one line convenience routines are desirable 1277 1278 .seealso: `PetscFE`, `PetscFEGeom`, `PetscDualSpace`, `PetscFEPushforward()`, `PetscDualSpacePushforwardHessian()`, `PetscDualSpacePushforward()` 1279 @*/ 1280 PetscErrorCode PetscFEPushforwardHessian(PetscFE fe, PetscFEGeom *fegeom, PetscInt Nv, PetscScalar vals[]) 1281 { 1282 PetscFunctionBeginHot; 1283 PetscCall(PetscDualSpacePushforwardHessian(fe->dualSpace, fegeom, Nv, fe->numComponents, vals)); 1284 PetscFunctionReturn(PETSC_SUCCESS); 1285 } 1286 1287 /* 1288 Purpose: Compute element vector for chunk of elements 1289 1290 Input: 1291 Sizes: 1292 Ne: number of elements 1293 Nf: number of fields 1294 PetscFE 1295 dim: spatial dimension 1296 Nb: number of basis functions 1297 Nc: number of field components 1298 PetscQuadrature 1299 Nq: number of quadrature points 1300 1301 Geometry: 1302 PetscFEGeom[Ne] possibly *Nq 1303 PetscReal v0s[dim] 1304 PetscReal n[dim] 1305 PetscReal jacobians[dim*dim] 1306 PetscReal jacobianInverses[dim*dim] 1307 PetscReal jacobianDeterminants 1308 FEM: 1309 PetscFE 1310 PetscQuadrature 1311 PetscReal quadPoints[Nq*dim] 1312 PetscReal quadWeights[Nq] 1313 PetscReal basis[Nq*Nb*Nc] 1314 PetscReal basisDer[Nq*Nb*Nc*dim] 1315 PetscScalar coefficients[Ne*Nb*Nc] 1316 PetscScalar elemVec[Ne*Nb*Nc] 1317 1318 Problem: 1319 PetscInt f: the active field 1320 f0, f1 1321 1322 Work Space: 1323 PetscFE 1324 PetscScalar f0[Nq*dim]; 1325 PetscScalar f1[Nq*dim*dim]; 1326 PetscScalar u[Nc]; 1327 PetscScalar gradU[Nc*dim]; 1328 PetscReal x[dim]; 1329 PetscScalar realSpaceDer[dim]; 1330 1331 Purpose: Compute element vector for N_cb batches of elements 1332 1333 Input: 1334 Sizes: 1335 N_cb: Number of serial cell batches 1336 1337 Geometry: 1338 PetscReal v0s[Ne*dim] 1339 PetscReal jacobians[Ne*dim*dim] possibly *Nq 1340 PetscReal jacobianInverses[Ne*dim*dim] possibly *Nq 1341 PetscReal jacobianDeterminants[Ne] possibly *Nq 1342 FEM: 1343 static PetscReal quadPoints[Nq*dim] 1344 static PetscReal quadWeights[Nq] 1345 static PetscReal basis[Nq*Nb*Nc] 1346 static PetscReal basisDer[Nq*Nb*Nc*dim] 1347 PetscScalar coefficients[Ne*Nb*Nc] 1348 PetscScalar elemVec[Ne*Nb*Nc] 1349 1350 ex62.c: 1351 PetscErrorCode PetscFEIntegrateResidualBatch(PetscInt Ne, PetscInt numFields, PetscInt field, PetscQuadrature quad[], const PetscScalar coefficients[], 1352 const PetscReal v0s[], const PetscReal jacobians[], const PetscReal jacobianInverses[], const PetscReal jacobianDeterminants[], 1353 void (*f0_func)(const PetscScalar u[], const PetscScalar gradU[], const PetscReal x[], PetscScalar f0[]), 1354 void (*f1_func)(const PetscScalar u[], const PetscScalar gradU[], const PetscReal x[], PetscScalar f1[]), PetscScalar elemVec[]) 1355 1356 ex52.c: 1357 PetscErrorCode IntegrateLaplacianBatchCPU(PetscInt Ne, PetscInt Nb, const PetscScalar coefficients[], const PetscReal jacobianInverses[], const PetscReal jacobianDeterminants[], PetscInt Nq, const PetscReal quadPoints[], const PetscReal quadWeights[], const PetscReal basisTabulation[], const PetscReal basisDerTabulation[], PetscScalar elemVec[], AppCtx *user) 1358 PetscErrorCode IntegrateElasticityBatchCPU(PetscInt Ne, PetscInt Nb, PetscInt Ncomp, const PetscScalar coefficients[], const PetscReal jacobianInverses[], const PetscReal jacobianDeterminants[], PetscInt Nq, const PetscReal quadPoints[], const PetscReal quadWeights[], const PetscReal basisTabulation[], const PetscReal basisDerTabulation[], PetscScalar elemVec[], AppCtx *user) 1359 1360 ex52_integrateElement.cu 1361 __global__ void integrateElementQuadrature(int N_cb, realType *coefficients, realType *jacobianInverses, realType *jacobianDeterminants, realType *elemVec) 1362 1363 PETSC_EXTERN PetscErrorCode IntegrateElementBatchGPU(PetscInt spatial_dim, PetscInt Ne, PetscInt Ncb, PetscInt Nbc, PetscInt Nbl, const PetscScalar coefficients[], 1364 const PetscReal jacobianInverses[], const PetscReal jacobianDeterminants[], PetscScalar elemVec[], 1365 PetscLogEvent event, PetscInt debug, PetscInt pde_op) 1366 1367 ex52_integrateElementOpenCL.c: 1368 PETSC_EXTERN PetscErrorCode IntegrateElementBatchGPU(PetscInt spatial_dim, PetscInt Ne, PetscInt Ncb, PetscInt Nbc, PetscInt N_bl, const PetscScalar coefficients[], 1369 const PetscReal jacobianInverses[], const PetscReal jacobianDeterminants[], PetscScalar elemVec[], 1370 PetscLogEvent event, PetscInt debug, PetscInt pde_op) 1371 1372 __kernel void integrateElementQuadrature(int N_cb, __global float *coefficients, __global float *jacobianInverses, __global float *jacobianDeterminants, __global float *elemVec) 1373 */ 1374 1375 /*@ 1376 PetscFEIntegrate - Produce the integral for the given field for a chunk of elements by quadrature integration 1377 1378 Not Collective 1379 1380 Input Parameters: 1381 + prob - The `PetscDS` specifying the discretizations and continuum functions 1382 . field - The field being integrated 1383 . Ne - The number of elements in the chunk 1384 . cgeom - The cell geometry for each cell in the chunk 1385 . coefficients - The array of FEM basis coefficients for the elements 1386 . probAux - The `PetscDS` specifying the auxiliary discretizations 1387 - coefficientsAux - The array of FEM auxiliary basis coefficients for the elements 1388 1389 Output Parameter: 1390 . integral - the integral for this field 1391 1392 Level: intermediate 1393 1394 Developer Notes: 1395 The function name begins with `PetscFE` and yet the first argument is `PetscDS` and it has no `PetscFE` arguments. 1396 1397 .seealso: `PetscFE`, `PetscDS`, `PetscFEIntegrateResidual()`, `PetscFEIntegrateBd()` 1398 @*/ 1399 PetscErrorCode PetscFEIntegrate(PetscDS prob, PetscInt field, PetscInt Ne, PetscFEGeom *cgeom, const PetscScalar coefficients[], PetscDS probAux, const PetscScalar coefficientsAux[], PetscScalar integral[]) 1400 { 1401 PetscFE fe; 1402 1403 PetscFunctionBegin; 1404 PetscValidHeaderSpecific(prob, PETSCDS_CLASSID, 1); 1405 PetscCall(PetscDSGetDiscretization(prob, field, (PetscObject *)&fe)); 1406 if (fe->ops->integrate) PetscCall((*fe->ops->integrate)(prob, field, Ne, cgeom, coefficients, probAux, coefficientsAux, integral)); 1407 PetscFunctionReturn(PETSC_SUCCESS); 1408 } 1409 1410 /*@C 1411 PetscFEIntegrateBd - Produce the integral for the given field for a chunk of elements by quadrature integration 1412 1413 Not Collective 1414 1415 Input Parameters: 1416 + prob - The `PetscDS` specifying the discretizations and continuum functions 1417 . field - The field being integrated 1418 . obj_func - The function to be integrated 1419 . Ne - The number of elements in the chunk 1420 . geom - The face geometry for each face in the chunk 1421 . coefficients - The array of FEM basis coefficients for the elements 1422 . probAux - The `PetscDS` specifying the auxiliary discretizations 1423 - coefficientsAux - The array of FEM auxiliary basis coefficients for the elements 1424 1425 Output Parameter: 1426 . integral - the integral for this field 1427 1428 Level: intermediate 1429 1430 Developer Notes: 1431 The function name begins with `PetscFE` and yet the first argument is `PetscDS` and it has no `PetscFE` arguments. 1432 1433 .seealso: `PetscFE`, `PetscDS`, `PetscFEIntegrateResidual()`, `PetscFEIntegrate()` 1434 @*/ 1435 PetscErrorCode PetscFEIntegrateBd(PetscDS prob, PetscInt field, void (*obj_func)(PetscInt, PetscInt, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], PetscReal, const PetscReal[], const PetscReal[], PetscInt, const PetscScalar[], PetscScalar[]), PetscInt Ne, PetscFEGeom *geom, const PetscScalar coefficients[], PetscDS probAux, const PetscScalar coefficientsAux[], PetscScalar integral[]) 1436 { 1437 PetscFE fe; 1438 1439 PetscFunctionBegin; 1440 PetscValidHeaderSpecific(prob, PETSCDS_CLASSID, 1); 1441 PetscCall(PetscDSGetDiscretization(prob, field, (PetscObject *)&fe)); 1442 if (fe->ops->integratebd) PetscCall((*fe->ops->integratebd)(prob, field, obj_func, Ne, geom, coefficients, probAux, coefficientsAux, integral)); 1443 PetscFunctionReturn(PETSC_SUCCESS); 1444 } 1445 1446 /*@ 1447 PetscFEIntegrateResidual - Produce the element residual vector for a chunk of elements by quadrature integration 1448 1449 Not Collective 1450 1451 Input Parameters: 1452 + ds - The `PetscDS` specifying the discretizations and continuum functions 1453 . key - The (label+value, field) being integrated 1454 . Ne - The number of elements in the chunk 1455 . cgeom - The cell geometry for each cell in the chunk 1456 . coefficients - The array of FEM basis coefficients for the elements 1457 . coefficients_t - The array of FEM basis time derivative coefficients for the elements 1458 . probAux - The `PetscDS` specifying the auxiliary discretizations 1459 . coefficientsAux - The array of FEM auxiliary basis coefficients for the elements 1460 - t - The time 1461 1462 Output Parameter: 1463 . elemVec - the element residual vectors from each element 1464 1465 Level: intermediate 1466 1467 Note: 1468 .vb 1469 Loop over batch of elements (e): 1470 Loop over quadrature points (q): 1471 Make u_q and gradU_q (loops over fields,Nb,Ncomp) and x_q 1472 Call f_0 and f_1 1473 Loop over element vector entries (f,fc --> i): 1474 elemVec[i] += \psi^{fc}_f(q) f0_{fc}(u, \nabla u) + \nabla\psi^{fc}_f(q) \cdot f1_{fc,df}(u, \nabla u) 1475 .ve 1476 1477 .seealso: `PetscFEIntegrateBdResidual()` 1478 @*/ 1479 PetscErrorCode PetscFEIntegrateResidual(PetscDS ds, PetscFormKey key, PetscInt Ne, PetscFEGeom *cgeom, const PetscScalar coefficients[], const PetscScalar coefficients_t[], PetscDS probAux, const PetscScalar coefficientsAux[], PetscReal t, PetscScalar elemVec[]) 1480 { 1481 PetscFE fe; 1482 1483 PetscFunctionBeginHot; 1484 PetscValidHeaderSpecific(ds, PETSCDS_CLASSID, 1); 1485 PetscCall(PetscDSGetDiscretization(ds, key.field, (PetscObject *)&fe)); 1486 if (fe->ops->integrateresidual) PetscCall((*fe->ops->integrateresidual)(ds, key, Ne, cgeom, coefficients, coefficients_t, probAux, coefficientsAux, t, elemVec)); 1487 PetscFunctionReturn(PETSC_SUCCESS); 1488 } 1489 1490 /*@ 1491 PetscFEIntegrateBdResidual - Produce the element residual vector for a chunk of elements by quadrature integration over a boundary 1492 1493 Not Collective 1494 1495 Input Parameters: 1496 + ds - The `PetscDS` specifying the discretizations and continuum functions 1497 . wf - The PetscWeakForm object holding the pointwise functions 1498 . key - The (label+value, field) being integrated 1499 . Ne - The number of elements in the chunk 1500 . fgeom - The face geometry for each cell in the chunk 1501 . coefficients - The array of FEM basis coefficients for the elements 1502 . coefficients_t - The array of FEM basis time derivative coefficients for the elements 1503 . probAux - The `PetscDS` specifying the auxiliary discretizations 1504 . coefficientsAux - The array of FEM auxiliary basis coefficients for the elements 1505 - t - The time 1506 1507 Output Parameter: 1508 . elemVec - the element residual vectors from each element 1509 1510 Level: intermediate 1511 1512 .seealso: `PetscFEIntegrateResidual()` 1513 @*/ 1514 PetscErrorCode PetscFEIntegrateBdResidual(PetscDS ds, PetscWeakForm wf, PetscFormKey key, PetscInt Ne, PetscFEGeom *fgeom, const PetscScalar coefficients[], const PetscScalar coefficients_t[], PetscDS probAux, const PetscScalar coefficientsAux[], PetscReal t, PetscScalar elemVec[]) 1515 { 1516 PetscFE fe; 1517 1518 PetscFunctionBegin; 1519 PetscValidHeaderSpecific(ds, PETSCDS_CLASSID, 1); 1520 PetscCall(PetscDSGetDiscretization(ds, key.field, (PetscObject *)&fe)); 1521 if (fe->ops->integratebdresidual) PetscCall((*fe->ops->integratebdresidual)(ds, wf, key, Ne, fgeom, coefficients, coefficients_t, probAux, coefficientsAux, t, elemVec)); 1522 PetscFunctionReturn(PETSC_SUCCESS); 1523 } 1524 1525 /*@ 1526 PetscFEIntegrateHybridResidual - Produce the element residual vector for a chunk of hybrid element faces by quadrature integration 1527 1528 Not Collective 1529 1530 Input Parameters: 1531 + ds - The `PetscDS` specifying the discretizations and continuum functions 1532 . dsIn - The `PetscDS` specifying the discretizations and continuum functions for input 1533 . key - The (label+value, field) being integrated 1534 . s - The side of the cell being integrated, 0 for negative and 1 for positive 1535 . Ne - The number of elements in the chunk 1536 . fgeom - The face geometry for each cell in the chunk 1537 . cgeom - The cell geometry for each neighbor cell in the chunk 1538 . coefficients - The array of FEM basis coefficients for the elements 1539 . coefficients_t - The array of FEM basis time derivative coefficients for the elements 1540 . probAux - The `PetscDS` specifying the auxiliary discretizations 1541 . coefficientsAux - The array of FEM auxiliary basis coefficients for the elements 1542 - t - The time 1543 1544 Output Parameter: 1545 . elemVec - the element residual vectors from each element 1546 1547 Level: developer 1548 1549 .seealso: `PetscFEIntegrateResidual()` 1550 @*/ 1551 PetscErrorCode PetscFEIntegrateHybridResidual(PetscDS ds, PetscDS dsIn, PetscFormKey key, PetscInt s, PetscInt Ne, PetscFEGeom *fgeom, PetscFEGeom *cgeom, const PetscScalar coefficients[], const PetscScalar coefficients_t[], PetscDS probAux, const PetscScalar coefficientsAux[], PetscReal t, PetscScalar elemVec[]) 1552 { 1553 PetscFE fe; 1554 1555 PetscFunctionBegin; 1556 PetscValidHeaderSpecific(ds, PETSCDS_CLASSID, 1); 1557 PetscValidHeaderSpecific(dsIn, PETSCDS_CLASSID, 2); 1558 PetscCall(PetscDSGetDiscretization(ds, key.field, (PetscObject *)&fe)); 1559 if (fe->ops->integratehybridresidual) PetscCall((*fe->ops->integratehybridresidual)(ds, dsIn, key, s, Ne, fgeom, cgeom, coefficients, coefficients_t, probAux, coefficientsAux, t, elemVec)); 1560 PetscFunctionReturn(PETSC_SUCCESS); 1561 } 1562 1563 /*@ 1564 PetscFEIntegrateJacobian - Produce the element Jacobian for a chunk of elements by quadrature integration 1565 1566 Not Collective 1567 1568 Input Parameters: 1569 + ds - The `PetscDS` specifying the discretizations and continuum functions 1570 . jtype - The type of matrix pointwise functions that should be used 1571 . key - The (label+value, fieldI*Nf + fieldJ) being integrated 1572 . Ne - The number of elements in the chunk 1573 . cgeom - The cell geometry for each cell in the chunk 1574 . coefficients - The array of FEM basis coefficients for the elements for the Jacobian evaluation point 1575 . coefficients_t - The array of FEM basis time derivative coefficients for the elements 1576 . probAux - The `PetscDS` specifying the auxiliary discretizations 1577 . coefficientsAux - The array of FEM auxiliary basis coefficients for the elements 1578 . t - The time 1579 - u_tshift - A multiplier for the dF/du_t term (as opposed to the dF/du term) 1580 1581 Output Parameter: 1582 . elemMat - the element matrices for the Jacobian from each element 1583 1584 Level: intermediate 1585 1586 Note: 1587 .vb 1588 Loop over batch of elements (e): 1589 Loop over element matrix entries (f,fc,g,gc --> i,j): 1590 Loop over quadrature points (q): 1591 Make u_q and gradU_q (loops over fields,Nb,Ncomp) 1592 elemMat[i,j] += \psi^{fc}_f(q) g0_{fc,gc}(u, \nabla u) \phi^{gc}_g(q) 1593 + \psi^{fc}_f(q) \cdot g1_{fc,gc,dg}(u, \nabla u) \nabla\phi^{gc}_g(q) 1594 + \nabla\psi^{fc}_f(q) \cdot g2_{fc,gc,df}(u, \nabla u) \phi^{gc}_g(q) 1595 + \nabla\psi^{fc}_f(q) \cdot g3_{fc,gc,df,dg}(u, \nabla u) \nabla\phi^{gc}_g(q) 1596 .ve 1597 1598 .seealso: `PetscFEIntegrateResidual()` 1599 @*/ 1600 PetscErrorCode PetscFEIntegrateJacobian(PetscDS ds, PetscFEJacobianType jtype, PetscFormKey key, PetscInt Ne, PetscFEGeom *cgeom, const PetscScalar coefficients[], const PetscScalar coefficients_t[], PetscDS probAux, const PetscScalar coefficientsAux[], PetscReal t, PetscReal u_tshift, PetscScalar elemMat[]) 1601 { 1602 PetscFE fe; 1603 PetscInt Nf; 1604 1605 PetscFunctionBegin; 1606 PetscValidHeaderSpecific(ds, PETSCDS_CLASSID, 1); 1607 PetscCall(PetscDSGetNumFields(ds, &Nf)); 1608 PetscCall(PetscDSGetDiscretization(ds, key.field / Nf, (PetscObject *)&fe)); 1609 if (fe->ops->integratejacobian) PetscCall((*fe->ops->integratejacobian)(ds, jtype, key, Ne, cgeom, coefficients, coefficients_t, probAux, coefficientsAux, t, u_tshift, elemMat)); 1610 PetscFunctionReturn(PETSC_SUCCESS); 1611 } 1612 1613 /*@ 1614 PetscFEIntegrateBdJacobian - Produce the boundary element Jacobian for a chunk of elements by quadrature integration 1615 1616 Not Collective 1617 1618 Input Parameters: 1619 + ds - The `PetscDS` specifying the discretizations and continuum functions 1620 . wf - The PetscWeakForm holding the pointwise functions 1621 . jtype - The type of matrix pointwise functions that should be used 1622 . key - The (label+value, fieldI*Nf + fieldJ) being integrated 1623 . Ne - The number of elements in the chunk 1624 . fgeom - The face geometry for each cell in the chunk 1625 . coefficients - The array of FEM basis coefficients for the elements for the Jacobian evaluation point 1626 . coefficients_t - The array of FEM basis time derivative coefficients for the elements 1627 . probAux - The `PetscDS` specifying the auxiliary discretizations 1628 . coefficientsAux - The array of FEM auxiliary basis coefficients for the elements 1629 . t - The time 1630 - u_tshift - A multiplier for the dF/du_t term (as opposed to the dF/du term) 1631 1632 Output Parameter: 1633 . elemMat - the element matrices for the Jacobian from each element 1634 1635 Level: intermediate 1636 1637 Note: 1638 .vb 1639 Loop over batch of elements (e): 1640 Loop over element matrix entries (f,fc,g,gc --> i,j): 1641 Loop over quadrature points (q): 1642 Make u_q and gradU_q (loops over fields,Nb,Ncomp) 1643 elemMat[i,j] += \psi^{fc}_f(q) g0_{fc,gc}(u, \nabla u) \phi^{gc}_g(q) 1644 + \psi^{fc}_f(q) \cdot g1_{fc,gc,dg}(u, \nabla u) \nabla\phi^{gc}_g(q) 1645 + \nabla\psi^{fc}_f(q) \cdot g2_{fc,gc,df}(u, \nabla u) \phi^{gc}_g(q) 1646 + \nabla\psi^{fc}_f(q) \cdot g3_{fc,gc,df,dg}(u, \nabla u) \nabla\phi^{gc}_g(q) 1647 .ve 1648 1649 .seealso: `PetscFEIntegrateJacobian()`, `PetscFEIntegrateResidual()` 1650 @*/ 1651 PetscErrorCode PetscFEIntegrateBdJacobian(PetscDS ds, PetscWeakForm wf, PetscFEJacobianType jtype, PetscFormKey key, PetscInt Ne, PetscFEGeom *fgeom, const PetscScalar coefficients[], const PetscScalar coefficients_t[], PetscDS probAux, const PetscScalar coefficientsAux[], PetscReal t, PetscReal u_tshift, PetscScalar elemMat[]) 1652 { 1653 PetscFE fe; 1654 PetscInt Nf; 1655 1656 PetscFunctionBegin; 1657 PetscValidHeaderSpecific(ds, PETSCDS_CLASSID, 1); 1658 PetscCall(PetscDSGetNumFields(ds, &Nf)); 1659 PetscCall(PetscDSGetDiscretization(ds, key.field / Nf, (PetscObject *)&fe)); 1660 if (fe->ops->integratebdjacobian) PetscCall((*fe->ops->integratebdjacobian)(ds, wf, jtype, key, Ne, fgeom, coefficients, coefficients_t, probAux, coefficientsAux, t, u_tshift, elemMat)); 1661 PetscFunctionReturn(PETSC_SUCCESS); 1662 } 1663 1664 /*@ 1665 PetscFEIntegrateHybridJacobian - Produce the boundary element Jacobian for a chunk of hybrid elements by quadrature integration 1666 1667 Not Collective 1668 1669 Input Parameters: 1670 + ds - The `PetscDS` specifying the discretizations and continuum functions for the output 1671 . dsIn - The `PetscDS` specifying the discretizations and continuum functions for the input 1672 . jtype - The type of matrix pointwise functions that should be used 1673 . key - The (label+value, fieldI*Nf + fieldJ) being integrated 1674 . s - The side of the cell being integrated, 0 for negative and 1 for positive 1675 . Ne - The number of elements in the chunk 1676 . fgeom - The face geometry for each cell in the chunk 1677 . cgeom - The cell geometry for each neighbor cell in the chunk 1678 . coefficients - The array of FEM basis coefficients for the elements for the Jacobian evaluation point 1679 . coefficients_t - The array of FEM basis time derivative coefficients for the elements 1680 . probAux - The `PetscDS` specifying the auxiliary discretizations 1681 . coefficientsAux - The array of FEM auxiliary basis coefficients for the elements 1682 . t - The time 1683 - u_tshift - A multiplier for the dF/du_t term (as opposed to the dF/du term) 1684 1685 Output Parameter: 1686 . elemMat - the element matrices for the Jacobian from each element 1687 1688 Level: developer 1689 1690 Note: 1691 .vb 1692 Loop over batch of elements (e): 1693 Loop over element matrix entries (f,fc,g,gc --> i,j): 1694 Loop over quadrature points (q): 1695 Make u_q and gradU_q (loops over fields,Nb,Ncomp) 1696 elemMat[i,j] += \psi^{fc}_f(q) g0_{fc,gc}(u, \nabla u) \phi^{gc}_g(q) 1697 + \psi^{fc}_f(q) \cdot g1_{fc,gc,dg}(u, \nabla u) \nabla\phi^{gc}_g(q) 1698 + \nabla\psi^{fc}_f(q) \cdot g2_{fc,gc,df}(u, \nabla u) \phi^{gc}_g(q) 1699 + \nabla\psi^{fc}_f(q) \cdot g3_{fc,gc,df,dg}(u, \nabla u) \nabla\phi^{gc}_g(q) 1700 .ve 1701 1702 .seealso: `PetscFEIntegrateJacobian()`, `PetscFEIntegrateResidual()` 1703 @*/ 1704 PetscErrorCode PetscFEIntegrateHybridJacobian(PetscDS ds, PetscDS dsIn, PetscFEJacobianType jtype, PetscFormKey key, PetscInt s, PetscInt Ne, PetscFEGeom *fgeom, PetscFEGeom *cgeom, const PetscScalar coefficients[], const PetscScalar coefficients_t[], PetscDS probAux, const PetscScalar coefficientsAux[], PetscReal t, PetscReal u_tshift, PetscScalar elemMat[]) 1705 { 1706 PetscFE fe; 1707 PetscInt Nf; 1708 1709 PetscFunctionBegin; 1710 PetscValidHeaderSpecific(ds, PETSCDS_CLASSID, 1); 1711 PetscCall(PetscDSGetNumFields(ds, &Nf)); 1712 PetscCall(PetscDSGetDiscretization(ds, key.field / Nf, (PetscObject *)&fe)); 1713 if (fe->ops->integratehybridjacobian) PetscCall((*fe->ops->integratehybridjacobian)(ds, dsIn, jtype, key, s, Ne, fgeom, cgeom, coefficients, coefficients_t, probAux, coefficientsAux, t, u_tshift, elemMat)); 1714 PetscFunctionReturn(PETSC_SUCCESS); 1715 } 1716 1717 /*@ 1718 PetscFEGetHeightSubspace - Get the subspace of this space for a mesh point of a given height 1719 1720 Input Parameters: 1721 + fe - The finite element space 1722 - height - The height of the `DMPLEX` point 1723 1724 Output Parameter: 1725 . subfe - The subspace of this `PetscFE` space 1726 1727 Level: advanced 1728 1729 Note: 1730 For example, if we want the subspace of this space for a face, we would choose height = 1. 1731 1732 .seealso: `PetscFECreateDefault()` 1733 @*/ 1734 PetscErrorCode PetscFEGetHeightSubspace(PetscFE fe, PetscInt height, PetscFE *subfe) 1735 { 1736 PetscSpace P, subP; 1737 PetscDualSpace Q, subQ; 1738 PetscQuadrature subq; 1739 PetscInt dim, Nc; 1740 1741 PetscFunctionBegin; 1742 PetscValidHeaderSpecific(fe, PETSCFE_CLASSID, 1); 1743 PetscAssertPointer(subfe, 3); 1744 if (height == 0) { 1745 *subfe = fe; 1746 PetscFunctionReturn(PETSC_SUCCESS); 1747 } 1748 PetscCall(PetscFEGetBasisSpace(fe, &P)); 1749 PetscCall(PetscFEGetDualSpace(fe, &Q)); 1750 PetscCall(PetscFEGetNumComponents(fe, &Nc)); 1751 PetscCall(PetscFEGetFaceQuadrature(fe, &subq)); 1752 PetscCall(PetscDualSpaceGetDimension(Q, &dim)); 1753 PetscCheck(height <= dim && height >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Asked for space at height %" PetscInt_FMT " for dimension %" PetscInt_FMT " space", height, dim); 1754 if (!fe->subspaces) PetscCall(PetscCalloc1(dim, &fe->subspaces)); 1755 if (height <= dim) { 1756 if (!fe->subspaces[height - 1]) { 1757 PetscFE sub = NULL; 1758 const char *name; 1759 1760 PetscCall(PetscSpaceGetHeightSubspace(P, height, &subP)); 1761 PetscCall(PetscDualSpaceGetHeightSubspace(Q, height, &subQ)); 1762 if (subQ) { 1763 PetscCall(PetscObjectReference((PetscObject)subP)); 1764 PetscCall(PetscObjectReference((PetscObject)subQ)); 1765 PetscCall(PetscObjectReference((PetscObject)subq)); 1766 PetscCall(PetscFECreateFromSpaces(subP, subQ, subq, NULL, &sub)); 1767 } 1768 if (sub) { 1769 PetscCall(PetscObjectGetName((PetscObject)fe, &name)); 1770 if (name) PetscCall(PetscFESetName(sub, name)); 1771 } 1772 fe->subspaces[height - 1] = sub; 1773 } 1774 *subfe = fe->subspaces[height - 1]; 1775 } else { 1776 *subfe = NULL; 1777 } 1778 PetscFunctionReturn(PETSC_SUCCESS); 1779 } 1780 1781 /*@ 1782 PetscFERefine - Create a "refined" `PetscFE` object that refines the reference cell into 1783 smaller copies. 1784 1785 Collective 1786 1787 Input Parameter: 1788 . fe - The initial `PetscFE` 1789 1790 Output Parameter: 1791 . feRef - The refined `PetscFE` 1792 1793 Level: advanced 1794 1795 Notes: 1796 This is typically used to generate a preconditioner for a higher order method from a lower order method on a 1797 refined mesh having the same number of dofs (but more sparsity). It is also used to create an 1798 interpolation between regularly refined meshes. 1799 1800 .seealso: `PetscFEType`, `PetscFECreate()`, `PetscFESetType()` 1801 @*/ 1802 PetscErrorCode PetscFERefine(PetscFE fe, PetscFE *feRef) 1803 { 1804 PetscSpace P, Pref; 1805 PetscDualSpace Q, Qref; 1806 DM K, Kref; 1807 PetscQuadrature q, qref; 1808 const PetscReal *v0, *jac; 1809 PetscInt numComp, numSubelements; 1810 PetscInt cStart, cEnd, c; 1811 PetscDualSpace *cellSpaces; 1812 1813 PetscFunctionBegin; 1814 PetscCall(PetscFEGetBasisSpace(fe, &P)); 1815 PetscCall(PetscFEGetDualSpace(fe, &Q)); 1816 PetscCall(PetscFEGetQuadrature(fe, &q)); 1817 PetscCall(PetscDualSpaceGetDM(Q, &K)); 1818 /* Create space */ 1819 PetscCall(PetscObjectReference((PetscObject)P)); 1820 Pref = P; 1821 /* Create dual space */ 1822 PetscCall(PetscDualSpaceDuplicate(Q, &Qref)); 1823 PetscCall(PetscDualSpaceSetType(Qref, PETSCDUALSPACEREFINED)); 1824 PetscCall(DMRefine(K, PetscObjectComm((PetscObject)fe), &Kref)); 1825 PetscCall(DMGetCoordinatesLocalSetUp(Kref)); 1826 PetscCall(PetscDualSpaceSetDM(Qref, Kref)); 1827 PetscCall(DMPlexGetHeightStratum(Kref, 0, &cStart, &cEnd)); 1828 PetscCall(PetscMalloc1(cEnd - cStart, &cellSpaces)); 1829 /* TODO: fix for non-uniform refinement */ 1830 for (c = 0; c < cEnd - cStart; c++) cellSpaces[c] = Q; 1831 PetscCall(PetscDualSpaceRefinedSetCellSpaces(Qref, cellSpaces)); 1832 PetscCall(PetscFree(cellSpaces)); 1833 PetscCall(DMDestroy(&Kref)); 1834 PetscCall(PetscDualSpaceSetUp(Qref)); 1835 /* Create element */ 1836 PetscCall(PetscFECreate(PetscObjectComm((PetscObject)fe), feRef)); 1837 PetscCall(PetscFESetType(*feRef, PETSCFECOMPOSITE)); 1838 PetscCall(PetscFESetBasisSpace(*feRef, Pref)); 1839 PetscCall(PetscFESetDualSpace(*feRef, Qref)); 1840 PetscCall(PetscFEGetNumComponents(fe, &numComp)); 1841 PetscCall(PetscFESetNumComponents(*feRef, numComp)); 1842 PetscCall(PetscFESetUp(*feRef)); 1843 PetscCall(PetscSpaceDestroy(&Pref)); 1844 PetscCall(PetscDualSpaceDestroy(&Qref)); 1845 /* Create quadrature */ 1846 PetscCall(PetscFECompositeGetMapping(*feRef, &numSubelements, &v0, &jac, NULL)); 1847 PetscCall(PetscQuadratureExpandComposite(q, numSubelements, v0, jac, &qref)); 1848 PetscCall(PetscFESetQuadrature(*feRef, qref)); 1849 PetscCall(PetscQuadratureDestroy(&qref)); 1850 PetscFunctionReturn(PETSC_SUCCESS); 1851 } 1852 1853 static PetscErrorCode PetscFESetDefaultName_Private(PetscFE fe) 1854 { 1855 PetscSpace P; 1856 PetscDualSpace Q; 1857 DM K; 1858 DMPolytopeType ct; 1859 PetscInt degree; 1860 char name[64]; 1861 1862 PetscFunctionBegin; 1863 PetscCall(PetscFEGetBasisSpace(fe, &P)); 1864 PetscCall(PetscSpaceGetDegree(P, °ree, NULL)); 1865 PetscCall(PetscFEGetDualSpace(fe, &Q)); 1866 PetscCall(PetscDualSpaceGetDM(Q, &K)); 1867 PetscCall(DMPlexGetCellType(K, 0, &ct)); 1868 switch (ct) { 1869 case DM_POLYTOPE_SEGMENT: 1870 case DM_POLYTOPE_POINT_PRISM_TENSOR: 1871 case DM_POLYTOPE_QUADRILATERAL: 1872 case DM_POLYTOPE_SEG_PRISM_TENSOR: 1873 case DM_POLYTOPE_HEXAHEDRON: 1874 case DM_POLYTOPE_QUAD_PRISM_TENSOR: 1875 PetscCall(PetscSNPrintf(name, sizeof(name), "Q%" PetscInt_FMT, degree)); 1876 break; 1877 case DM_POLYTOPE_TRIANGLE: 1878 case DM_POLYTOPE_TETRAHEDRON: 1879 PetscCall(PetscSNPrintf(name, sizeof(name), "P%" PetscInt_FMT, degree)); 1880 break; 1881 case DM_POLYTOPE_TRI_PRISM: 1882 case DM_POLYTOPE_TRI_PRISM_TENSOR: 1883 PetscCall(PetscSNPrintf(name, sizeof(name), "P%" PetscInt_FMT "xQ%" PetscInt_FMT, degree, degree)); 1884 break; 1885 default: 1886 PetscCall(PetscSNPrintf(name, sizeof(name), "FE")); 1887 } 1888 PetscCall(PetscFESetName(fe, name)); 1889 PetscFunctionReturn(PETSC_SUCCESS); 1890 } 1891 1892 /*@ 1893 PetscFECreateFromSpaces - Create a `PetscFE` from the basis and dual spaces 1894 1895 Collective 1896 1897 Input Parameters: 1898 + P - The basis space 1899 . Q - The dual space 1900 . q - The cell quadrature 1901 - fq - The face quadrature 1902 1903 Output Parameter: 1904 . fem - The `PetscFE` object 1905 1906 Level: beginner 1907 1908 Note: 1909 The `PetscFE` takes ownership of these spaces by calling destroy on each. They should not be used after this call, and for borrowed references from `PetscFEGetSpace()` and the like, the caller must use `PetscObjectReference` before this call. 1910 1911 .seealso: `PetscFE`, `PetscSpace`, `PetscDualSpace`, `PetscQuadrature`, 1912 `PetscFECreateLagrangeByCell()`, `PetscFECreateDefault()`, `PetscFECreateByCell()`, `PetscFECreate()`, `PetscSpaceCreate()`, `PetscDualSpaceCreate()` 1913 @*/ 1914 PetscErrorCode PetscFECreateFromSpaces(PetscSpace P, PetscDualSpace Q, PetscQuadrature q, PetscQuadrature fq, PetscFE *fem) 1915 { 1916 PetscInt Nc; 1917 PetscInt p_Ns = -1, p_Nc = -1, q_Ns = -1, q_Nc = -1; 1918 PetscBool p_is_uniform_sum = PETSC_FALSE, p_interleave_basis = PETSC_FALSE, p_interleave_components = PETSC_FALSE; 1919 PetscBool q_is_uniform_sum = PETSC_FALSE, q_interleave_basis = PETSC_FALSE, q_interleave_components = PETSC_FALSE; 1920 const char *prefix; 1921 1922 PetscFunctionBegin; 1923 PetscCall(PetscObjectTypeCompare((PetscObject)P, PETSCSPACESUM, &p_is_uniform_sum)); 1924 if (p_is_uniform_sum) { 1925 PetscSpace subsp_0 = NULL; 1926 PetscCall(PetscSpaceSumGetNumSubspaces(P, &p_Ns)); 1927 PetscCall(PetscSpaceGetNumComponents(P, &p_Nc)); 1928 PetscCall(PetscSpaceSumGetConcatenate(P, &p_is_uniform_sum)); 1929 PetscCall(PetscSpaceSumGetInterleave(P, &p_interleave_basis, &p_interleave_components)); 1930 for (PetscInt s = 0; s < p_Ns; s++) { 1931 PetscSpace subsp; 1932 1933 PetscCall(PetscSpaceSumGetSubspace(P, s, &subsp)); 1934 if (!s) { 1935 subsp_0 = subsp; 1936 } else if (subsp != subsp_0) { 1937 p_is_uniform_sum = PETSC_FALSE; 1938 } 1939 } 1940 } 1941 PetscCall(PetscObjectTypeCompare((PetscObject)Q, PETSCDUALSPACESUM, &q_is_uniform_sum)); 1942 if (q_is_uniform_sum) { 1943 PetscDualSpace subsp_0 = NULL; 1944 PetscCall(PetscDualSpaceSumGetNumSubspaces(Q, &q_Ns)); 1945 PetscCall(PetscDualSpaceGetNumComponents(Q, &q_Nc)); 1946 PetscCall(PetscDualSpaceSumGetConcatenate(Q, &q_is_uniform_sum)); 1947 PetscCall(PetscDualSpaceSumGetInterleave(Q, &q_interleave_basis, &q_interleave_components)); 1948 for (PetscInt s = 0; s < q_Ns; s++) { 1949 PetscDualSpace subsp; 1950 1951 PetscCall(PetscDualSpaceSumGetSubspace(Q, s, &subsp)); 1952 if (!s) { 1953 subsp_0 = subsp; 1954 } else if (subsp != subsp_0) { 1955 q_is_uniform_sum = PETSC_FALSE; 1956 } 1957 } 1958 } 1959 if (p_is_uniform_sum && q_is_uniform_sum && (p_interleave_basis == q_interleave_basis) && (p_interleave_components == q_interleave_components) && (p_Ns == q_Ns) && (p_Nc == q_Nc)) { 1960 PetscSpace scalar_space; 1961 PetscDualSpace scalar_dspace; 1962 PetscFE scalar_fe; 1963 1964 PetscCall(PetscSpaceSumGetSubspace(P, 0, &scalar_space)); 1965 PetscCall(PetscDualSpaceSumGetSubspace(Q, 0, &scalar_dspace)); 1966 PetscCall(PetscObjectReference((PetscObject)scalar_space)); 1967 PetscCall(PetscObjectReference((PetscObject)scalar_dspace)); 1968 PetscCall(PetscObjectReference((PetscObject)q)); 1969 PetscCall(PetscObjectReference((PetscObject)fq)); 1970 PetscCall(PetscFECreateFromSpaces(scalar_space, scalar_dspace, q, fq, &scalar_fe)); 1971 PetscCall(PetscFECreateVector(scalar_fe, p_Ns, p_interleave_basis, p_interleave_components, fem)); 1972 PetscCall(PetscFEDestroy(&scalar_fe)); 1973 } else { 1974 PetscCall(PetscFECreate(PetscObjectComm((PetscObject)P), fem)); 1975 PetscCall(PetscFESetType(*fem, PETSCFEBASIC)); 1976 } 1977 PetscCall(PetscSpaceGetNumComponents(P, &Nc)); 1978 PetscCall(PetscFESetNumComponents(*fem, Nc)); 1979 PetscCall(PetscFESetBasisSpace(*fem, P)); 1980 PetscCall(PetscFESetDualSpace(*fem, Q)); 1981 PetscCall(PetscObjectGetOptionsPrefix((PetscObject)P, &prefix)); 1982 PetscCall(PetscObjectSetOptionsPrefix((PetscObject)*fem, prefix)); 1983 PetscCall(PetscFESetUp(*fem)); 1984 PetscCall(PetscSpaceDestroy(&P)); 1985 PetscCall(PetscDualSpaceDestroy(&Q)); 1986 PetscCall(PetscFESetQuadrature(*fem, q)); 1987 PetscCall(PetscFESetFaceQuadrature(*fem, fq)); 1988 PetscCall(PetscQuadratureDestroy(&q)); 1989 PetscCall(PetscQuadratureDestroy(&fq)); 1990 PetscCall(PetscFESetDefaultName_Private(*fem)); 1991 PetscFunctionReturn(PETSC_SUCCESS); 1992 } 1993 1994 static PetscErrorCode PetscFECreate_Internal(MPI_Comm comm, PetscInt dim, PetscInt Nc, DMPolytopeType ct, const char prefix[], PetscInt degree, PetscInt qorder, PetscBool setFromOptions, PetscFE *fem) 1995 { 1996 DM K; 1997 PetscSpace P; 1998 PetscDualSpace Q; 1999 PetscQuadrature q, fq; 2000 PetscBool tensor; 2001 2002 PetscFunctionBegin; 2003 if (prefix) PetscAssertPointer(prefix, 5); 2004 PetscAssertPointer(fem, 9); 2005 switch (ct) { 2006 case DM_POLYTOPE_SEGMENT: 2007 case DM_POLYTOPE_POINT_PRISM_TENSOR: 2008 case DM_POLYTOPE_QUADRILATERAL: 2009 case DM_POLYTOPE_SEG_PRISM_TENSOR: 2010 case DM_POLYTOPE_HEXAHEDRON: 2011 case DM_POLYTOPE_QUAD_PRISM_TENSOR: 2012 tensor = PETSC_TRUE; 2013 break; 2014 default: 2015 tensor = PETSC_FALSE; 2016 } 2017 /* Create space */ 2018 PetscCall(PetscSpaceCreate(comm, &P)); 2019 PetscCall(PetscSpaceSetType(P, PETSCSPACEPOLYNOMIAL)); 2020 PetscCall(PetscObjectSetOptionsPrefix((PetscObject)P, prefix)); 2021 PetscCall(PetscSpacePolynomialSetTensor(P, tensor)); 2022 PetscCall(PetscSpaceSetNumComponents(P, Nc)); 2023 PetscCall(PetscSpaceSetNumVariables(P, dim)); 2024 if (degree >= 0) { 2025 PetscCall(PetscSpaceSetDegree(P, degree, PETSC_DETERMINE)); 2026 if (ct == DM_POLYTOPE_TRI_PRISM || ct == DM_POLYTOPE_TRI_PRISM_TENSOR) { 2027 PetscSpace Pend, Pside; 2028 2029 PetscCall(PetscSpaceSetNumComponents(P, 1)); 2030 PetscCall(PetscSpaceCreate(comm, &Pend)); 2031 PetscCall(PetscSpaceSetType(Pend, PETSCSPACEPOLYNOMIAL)); 2032 PetscCall(PetscSpacePolynomialSetTensor(Pend, PETSC_FALSE)); 2033 PetscCall(PetscSpaceSetNumComponents(Pend, 1)); 2034 PetscCall(PetscSpaceSetNumVariables(Pend, dim - 1)); 2035 PetscCall(PetscSpaceSetDegree(Pend, degree, PETSC_DETERMINE)); 2036 PetscCall(PetscSpaceCreate(comm, &Pside)); 2037 PetscCall(PetscSpaceSetType(Pside, PETSCSPACEPOLYNOMIAL)); 2038 PetscCall(PetscSpacePolynomialSetTensor(Pside, PETSC_FALSE)); 2039 PetscCall(PetscSpaceSetNumComponents(Pside, 1)); 2040 PetscCall(PetscSpaceSetNumVariables(Pside, 1)); 2041 PetscCall(PetscSpaceSetDegree(Pside, degree, PETSC_DETERMINE)); 2042 PetscCall(PetscSpaceSetType(P, PETSCSPACETENSOR)); 2043 PetscCall(PetscSpaceTensorSetNumSubspaces(P, 2)); 2044 PetscCall(PetscSpaceTensorSetSubspace(P, 0, Pend)); 2045 PetscCall(PetscSpaceTensorSetSubspace(P, 1, Pside)); 2046 PetscCall(PetscSpaceDestroy(&Pend)); 2047 PetscCall(PetscSpaceDestroy(&Pside)); 2048 2049 if (Nc > 1) { 2050 PetscSpace scalar_P = P; 2051 2052 PetscCall(PetscSpaceCreate(comm, &P)); 2053 PetscCall(PetscSpaceSetNumVariables(P, dim)); 2054 PetscCall(PetscSpaceSetNumComponents(P, Nc)); 2055 PetscCall(PetscSpaceSetType(P, PETSCSPACESUM)); 2056 PetscCall(PetscSpaceSumSetNumSubspaces(P, Nc)); 2057 PetscCall(PetscSpaceSumSetConcatenate(P, PETSC_TRUE)); 2058 PetscCall(PetscSpaceSumSetInterleave(P, PETSC_TRUE, PETSC_FALSE)); 2059 for (PetscInt i = 0; i < Nc; i++) PetscCall(PetscSpaceSumSetSubspace(P, i, scalar_P)); 2060 PetscCall(PetscSpaceDestroy(&scalar_P)); 2061 } 2062 } 2063 } 2064 if (setFromOptions) PetscCall(PetscSpaceSetFromOptions(P)); 2065 PetscCall(PetscSpaceSetUp(P)); 2066 PetscCall(PetscSpaceGetDegree(P, °ree, NULL)); 2067 PetscCall(PetscSpacePolynomialGetTensor(P, &tensor)); 2068 PetscCall(PetscSpaceGetNumComponents(P, &Nc)); 2069 /* Create dual space */ 2070 PetscCall(PetscDualSpaceCreate(comm, &Q)); 2071 PetscCall(PetscDualSpaceSetType(Q, PETSCDUALSPACELAGRANGE)); 2072 PetscCall(PetscObjectSetOptionsPrefix((PetscObject)Q, prefix)); 2073 PetscCall(DMPlexCreateReferenceCell(PETSC_COMM_SELF, ct, &K)); 2074 PetscCall(PetscDualSpaceSetDM(Q, K)); 2075 PetscCall(DMDestroy(&K)); 2076 PetscCall(PetscDualSpaceSetNumComponents(Q, Nc)); 2077 PetscCall(PetscDualSpaceSetOrder(Q, degree)); 2078 PetscCall(PetscDualSpaceLagrangeSetTensor(Q, (tensor || (ct == DM_POLYTOPE_TRI_PRISM)) ? PETSC_TRUE : PETSC_FALSE)); 2079 if (setFromOptions) PetscCall(PetscDualSpaceSetFromOptions(Q)); 2080 PetscCall(PetscDualSpaceSetUp(Q)); 2081 /* Create quadrature */ 2082 qorder = qorder >= 0 ? qorder : degree; 2083 if (setFromOptions) { 2084 PetscObjectOptionsBegin((PetscObject)P); 2085 PetscCall(PetscOptionsBoundedInt("-petscfe_default_quadrature_order", "Quadrature order is one less than quadrature points per edge", "PetscFECreateDefault", qorder, &qorder, NULL, 0)); 2086 PetscOptionsEnd(); 2087 } 2088 PetscCall(PetscDTCreateDefaultQuadrature(ct, qorder, &q, &fq)); 2089 /* Create finite element */ 2090 PetscCall(PetscFECreateFromSpaces(P, Q, q, fq, fem)); 2091 if (setFromOptions) PetscCall(PetscFESetFromOptions(*fem)); 2092 PetscFunctionReturn(PETSC_SUCCESS); 2093 } 2094 2095 /*@ 2096 PetscFECreateDefault - Create a `PetscFE` for basic FEM computation 2097 2098 Collective 2099 2100 Input Parameters: 2101 + comm - The MPI comm 2102 . dim - The spatial dimension 2103 . Nc - The number of components 2104 . isSimplex - Flag for simplex reference cell, otherwise its a tensor product 2105 . prefix - The options prefix, or `NULL` 2106 - qorder - The quadrature order or `PETSC_DETERMINE` to use `PetscSpace` polynomial degree 2107 2108 Output Parameter: 2109 . fem - The `PetscFE` object 2110 2111 Level: beginner 2112 2113 Note: 2114 Each subobject is SetFromOption() during creation, so that the object may be customized from the command line, using the prefix specified above. See the links below for the particular options available. 2115 2116 .seealso: `PetscFECreateLagrange()`, `PetscFECreateByCell()`, `PetscSpaceSetFromOptions()`, `PetscDualSpaceSetFromOptions()`, `PetscFESetFromOptions()`, `PetscFECreate()`, `PetscSpaceCreate()`, `PetscDualSpaceCreate()` 2117 @*/ 2118 PetscErrorCode PetscFECreateDefault(MPI_Comm comm, PetscInt dim, PetscInt Nc, PetscBool isSimplex, const char prefix[], PetscInt qorder, PetscFE *fem) 2119 { 2120 PetscFunctionBegin; 2121 PetscCall(PetscFECreate_Internal(comm, dim, Nc, DMPolytopeTypeSimpleShape(dim, isSimplex), prefix, PETSC_DECIDE, qorder, PETSC_TRUE, fem)); 2122 PetscFunctionReturn(PETSC_SUCCESS); 2123 } 2124 2125 /*@ 2126 PetscFECreateByCell - Create a `PetscFE` for basic FEM computation 2127 2128 Collective 2129 2130 Input Parameters: 2131 + comm - The MPI comm 2132 . dim - The spatial dimension 2133 . Nc - The number of components 2134 . ct - The celltype of the reference cell 2135 . prefix - The options prefix, or `NULL` 2136 - qorder - The quadrature order or `PETSC_DETERMINE` to use `PetscSpace` polynomial degree 2137 2138 Output Parameter: 2139 . fem - The `PetscFE` object 2140 2141 Level: beginner 2142 2143 Note: 2144 Each subobject is SetFromOption() during creation, so that the object may be customized from the command line, using the prefix specified above. See the links below for the particular options available. 2145 2146 .seealso: `PetscFECreateDefault()`, `PetscFECreateLagrange()`, `PetscSpaceSetFromOptions()`, `PetscDualSpaceSetFromOptions()`, `PetscFESetFromOptions()`, `PetscFECreate()`, `PetscSpaceCreate()`, `PetscDualSpaceCreate()` 2147 @*/ 2148 PetscErrorCode PetscFECreateByCell(MPI_Comm comm, PetscInt dim, PetscInt Nc, DMPolytopeType ct, const char prefix[], PetscInt qorder, PetscFE *fem) 2149 { 2150 PetscFunctionBegin; 2151 PetscCall(PetscFECreate_Internal(comm, dim, Nc, ct, prefix, PETSC_DECIDE, qorder, PETSC_TRUE, fem)); 2152 PetscFunctionReturn(PETSC_SUCCESS); 2153 } 2154 2155 /*@ 2156 PetscFECreateLagrange - Create a `PetscFE` for the basic Lagrange space of degree k 2157 2158 Collective 2159 2160 Input Parameters: 2161 + comm - The MPI comm 2162 . dim - The spatial dimension 2163 . Nc - The number of components 2164 . isSimplex - Flag for simplex reference cell, otherwise its a tensor product 2165 . k - The degree k of the space 2166 - qorder - The quadrature order or `PETSC_DETERMINE` to use `PetscSpace` polynomial degree 2167 2168 Output Parameter: 2169 . fem - The `PetscFE` object 2170 2171 Level: beginner 2172 2173 Note: 2174 For simplices, this element is the space of maximum polynomial degree k, otherwise it is a tensor product of 1D polynomials, each with maximal degree k. 2175 2176 .seealso: `PetscFECreateLagrangeByCell()`, `PetscFECreateDefault()`, `PetscFECreateByCell()`, `PetscFECreate()`, `PetscSpaceCreate()`, `PetscDualSpaceCreate()` 2177 @*/ 2178 PetscErrorCode PetscFECreateLagrange(MPI_Comm comm, PetscInt dim, PetscInt Nc, PetscBool isSimplex, PetscInt k, PetscInt qorder, PetscFE *fem) 2179 { 2180 PetscFunctionBegin; 2181 PetscCall(PetscFECreate_Internal(comm, dim, Nc, DMPolytopeTypeSimpleShape(dim, isSimplex), NULL, k, qorder, PETSC_FALSE, fem)); 2182 PetscFunctionReturn(PETSC_SUCCESS); 2183 } 2184 2185 /*@ 2186 PetscFECreateLagrangeByCell - Create a `PetscFE` for the basic Lagrange space of degree k 2187 2188 Collective 2189 2190 Input Parameters: 2191 + comm - The MPI comm 2192 . dim - The spatial dimension 2193 . Nc - The number of components 2194 . ct - The celltype of the reference cell 2195 . k - The degree k of the space 2196 - qorder - The quadrature order or `PETSC_DETERMINE` to use `PetscSpace` polynomial degree 2197 2198 Output Parameter: 2199 . fem - The `PetscFE` object 2200 2201 Level: beginner 2202 2203 Note: 2204 For simplices, this element is the space of maximum polynomial degree k, otherwise it is a tensor product of 1D polynomials, each with maximal degree k. 2205 2206 .seealso: `PetscFECreateLagrange()`, `PetscFECreateDefault()`, `PetscFECreateByCell()`, `PetscFECreate()`, `PetscSpaceCreate()`, `PetscDualSpaceCreate()` 2207 @*/ 2208 PetscErrorCode PetscFECreateLagrangeByCell(MPI_Comm comm, PetscInt dim, PetscInt Nc, DMPolytopeType ct, PetscInt k, PetscInt qorder, PetscFE *fem) 2209 { 2210 PetscFunctionBegin; 2211 PetscCall(PetscFECreate_Internal(comm, dim, Nc, ct, NULL, k, qorder, PETSC_FALSE, fem)); 2212 PetscFunctionReturn(PETSC_SUCCESS); 2213 } 2214 2215 /*@ 2216 PetscFELimitDegree - Copy a `PetscFE` but limit the degree to be in the given range 2217 2218 Collective 2219 2220 Input Parameters: 2221 + fe - The `PetscFE` 2222 . minDegree - The minimum degree, or `PETSC_DETERMINE` for no limit 2223 - maxDegree - The maximum degree, or `PETSC_DETERMINE` for no limit 2224 2225 Output Parameter: 2226 . newfe - The `PetscFE` object 2227 2228 Level: advanced 2229 2230 Note: 2231 This currently only works for Lagrange elements. 2232 2233 .seealso: `PetscFECreateLagrange()`, `PetscFECreateDefault()`, `PetscFECreateByCell()`, `PetscFECreate()`, `PetscSpaceCreate()`, `PetscDualSpaceCreate()` 2234 @*/ 2235 PetscErrorCode PetscFELimitDegree(PetscFE fe, PetscInt minDegree, PetscInt maxDegree, PetscFE *newfe) 2236 { 2237 PetscDualSpace Q; 2238 PetscBool islag, issum; 2239 PetscInt oldk = 0, k; 2240 2241 PetscFunctionBegin; 2242 PetscCall(PetscFEGetDualSpace(fe, &Q)); 2243 PetscCall(PetscObjectTypeCompare((PetscObject)Q, PETSCDUALSPACELAGRANGE, &islag)); 2244 PetscCall(PetscObjectTypeCompare((PetscObject)Q, PETSCDUALSPACESUM, &issum)); 2245 if (islag) { 2246 PetscCall(PetscDualSpaceGetOrder(Q, &oldk)); 2247 } else if (issum) { 2248 PetscDualSpace subQ; 2249 2250 PetscCall(PetscDualSpaceSumGetSubspace(Q, 0, &subQ)); 2251 PetscCall(PetscDualSpaceGetOrder(subQ, &oldk)); 2252 } else { 2253 PetscCall(PetscObjectReference((PetscObject)fe)); 2254 *newfe = fe; 2255 PetscFunctionReturn(PETSC_SUCCESS); 2256 } 2257 k = oldk; 2258 if (minDegree >= 0) k = PetscMax(k, minDegree); 2259 if (maxDegree >= 0) k = PetscMin(k, maxDegree); 2260 if (k != oldk) { 2261 DM K; 2262 PetscSpace P; 2263 PetscQuadrature q; 2264 DMPolytopeType ct; 2265 PetscInt dim, Nc; 2266 2267 PetscCall(PetscFEGetBasisSpace(fe, &P)); 2268 PetscCall(PetscSpaceGetNumVariables(P, &dim)); 2269 PetscCall(PetscSpaceGetNumComponents(P, &Nc)); 2270 PetscCall(PetscDualSpaceGetDM(Q, &K)); 2271 PetscCall(DMPlexGetCellType(K, 0, &ct)); 2272 PetscCall(PetscFECreateLagrangeByCell(PetscObjectComm((PetscObject)fe), dim, Nc, ct, k, PETSC_DETERMINE, newfe)); 2273 PetscCall(PetscFEGetQuadrature(fe, &q)); 2274 PetscCall(PetscFESetQuadrature(*newfe, q)); 2275 } else { 2276 PetscCall(PetscObjectReference((PetscObject)fe)); 2277 *newfe = fe; 2278 } 2279 PetscFunctionReturn(PETSC_SUCCESS); 2280 } 2281 2282 /*@ 2283 PetscFESetName - Names the `PetscFE` and its subobjects 2284 2285 Not Collective 2286 2287 Input Parameters: 2288 + fe - The `PetscFE` 2289 - name - The name 2290 2291 Level: intermediate 2292 2293 .seealso: `PetscFECreate()`, `PetscSpaceCreate()`, `PetscDualSpaceCreate()` 2294 @*/ 2295 PetscErrorCode PetscFESetName(PetscFE fe, const char name[]) 2296 { 2297 PetscSpace P; 2298 PetscDualSpace Q; 2299 2300 PetscFunctionBegin; 2301 PetscCall(PetscFEGetBasisSpace(fe, &P)); 2302 PetscCall(PetscFEGetDualSpace(fe, &Q)); 2303 PetscCall(PetscObjectSetName((PetscObject)fe, name)); 2304 PetscCall(PetscObjectSetName((PetscObject)P, name)); 2305 PetscCall(PetscObjectSetName((PetscObject)Q, name)); 2306 PetscFunctionReturn(PETSC_SUCCESS); 2307 } 2308 2309 PetscErrorCode PetscFEEvaluateFieldJets_Internal(PetscDS ds, PetscInt Nf, PetscInt r, PetscInt q, PetscTabulation T[], PetscFEGeom *fegeom, const PetscScalar coefficients[], const PetscScalar coefficients_t[], PetscScalar u[], PetscScalar u_x[], PetscScalar u_t[]) 2310 { 2311 PetscInt dOffset = 0, fOffset = 0, f, g; 2312 2313 for (f = 0; f < Nf; ++f) { 2314 PetscCheck(r < T[f]->Nr, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Replica number %" PetscInt_FMT " should be in [0, %" PetscInt_FMT ")", r, T[f]->Nr); 2315 PetscCheck(q < T[f]->Np, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Point number %" PetscInt_FMT " should be in [0, %" PetscInt_FMT ")", q, T[f]->Np); 2316 PetscFE fe; 2317 const PetscInt k = ds->jetDegree[f]; 2318 const PetscInt cdim = T[f]->cdim; 2319 const PetscInt dE = fegeom->dimEmbed; 2320 const PetscInt Nq = T[f]->Np; 2321 const PetscInt Nbf = T[f]->Nb; 2322 const PetscInt Ncf = T[f]->Nc; 2323 const PetscReal *Bq = &T[f]->T[0][(r * Nq + q) * Nbf * Ncf]; 2324 const PetscReal *Dq = &T[f]->T[1][(r * Nq + q) * Nbf * Ncf * cdim]; 2325 const PetscReal *Hq = k > 1 ? &T[f]->T[2][(r * Nq + q) * Nbf * Ncf * cdim * cdim] : NULL; 2326 PetscInt hOffset = 0, b, c, d; 2327 2328 PetscCall(PetscDSGetDiscretization(ds, f, (PetscObject *)&fe)); 2329 for (c = 0; c < Ncf; ++c) u[fOffset + c] = 0.0; 2330 for (d = 0; d < dE * Ncf; ++d) u_x[fOffset * dE + d] = 0.0; 2331 for (b = 0; b < Nbf; ++b) { 2332 for (c = 0; c < Ncf; ++c) { 2333 const PetscInt cidx = b * Ncf + c; 2334 2335 u[fOffset + c] += Bq[cidx] * coefficients[dOffset + b]; 2336 for (d = 0; d < cdim; ++d) u_x[(fOffset + c) * dE + d] += Dq[cidx * cdim + d] * coefficients[dOffset + b]; 2337 } 2338 } 2339 if (k > 1) { 2340 for (g = 0; g < Nf; ++g) hOffset += T[g]->Nc * dE; 2341 for (d = 0; d < dE * dE * Ncf; ++d) u_x[hOffset + fOffset * dE * dE + d] = 0.0; 2342 for (b = 0; b < Nbf; ++b) { 2343 for (c = 0; c < Ncf; ++c) { 2344 const PetscInt cidx = b * Ncf + c; 2345 2346 for (d = 0; d < cdim * cdim; ++d) u_x[hOffset + (fOffset + c) * dE * dE + d] += Hq[cidx * cdim * cdim + d] * coefficients[dOffset + b]; 2347 } 2348 } 2349 PetscCall(PetscFEPushforwardHessian(fe, fegeom, 1, &u_x[hOffset + fOffset * dE * dE])); 2350 } 2351 PetscCall(PetscFEPushforward(fe, fegeom, 1, &u[fOffset])); 2352 PetscCall(PetscFEPushforwardGradient(fe, fegeom, 1, &u_x[fOffset * dE])); 2353 if (u_t) { 2354 for (c = 0; c < Ncf; ++c) u_t[fOffset + c] = 0.0; 2355 for (b = 0; b < Nbf; ++b) { 2356 for (c = 0; c < Ncf; ++c) { 2357 const PetscInt cidx = b * Ncf + c; 2358 2359 u_t[fOffset + c] += Bq[cidx] * coefficients_t[dOffset + b]; 2360 } 2361 } 2362 PetscCall(PetscFEPushforward(fe, fegeom, 1, &u_t[fOffset])); 2363 } 2364 fOffset += Ncf; 2365 dOffset += Nbf; 2366 } 2367 return PETSC_SUCCESS; 2368 } 2369 2370 PetscErrorCode PetscFEEvaluateFieldJets_Hybrid_Internal(PetscDS ds, PetscInt Nf, PetscInt rc, PetscInt qc, PetscTabulation Tab[], const PetscInt rf[], const PetscInt qf[], PetscTabulation Tabf[], PetscFEGeom *fegeom, PetscFEGeom *fegeomNbr, const PetscScalar coefficients[], const PetscScalar coefficients_t[], PetscScalar u[], PetscScalar u_x[], PetscScalar u_t[]) 2371 { 2372 PetscInt dOffset = 0, fOffset = 0, f, g; 2373 2374 /* f is the field number in the DS, g is the field number in u[] */ 2375 for (f = 0, g = 0; f < Nf; ++f) { 2376 PetscBool isCohesive; 2377 PetscInt Ns, s; 2378 2379 if (!Tab[f]) continue; 2380 PetscCall(PetscDSGetCohesive(ds, f, &isCohesive)); 2381 Ns = isCohesive ? 1 : 2; 2382 { 2383 PetscTabulation T = isCohesive ? Tab[f] : Tabf[f]; 2384 PetscFE fe = (PetscFE)ds->disc[f]; 2385 const PetscInt dEt = T->cdim; 2386 const PetscInt dE = fegeom->dimEmbed; 2387 const PetscInt Nq = T->Np; 2388 const PetscInt Nbf = T->Nb; 2389 const PetscInt Ncf = T->Nc; 2390 2391 for (s = 0; s < Ns; ++s, ++g) { 2392 const PetscInt r = isCohesive ? rc : rf[s]; 2393 const PetscInt q = isCohesive ? qc : qf[s]; 2394 const PetscReal *Bq = &T->T[0][(r * Nq + q) * Nbf * Ncf]; 2395 const PetscReal *Dq = &T->T[1][(r * Nq + q) * Nbf * Ncf * dEt]; 2396 PetscInt b, c, d; 2397 2398 PetscCheck(r < T->Nr, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Field %" PetscInt_FMT " Side %" PetscInt_FMT " Replica number %" PetscInt_FMT " should be in [0, %" PetscInt_FMT ")", f, s, r, T->Nr); 2399 PetscCheck(q < T->Np, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Field %" PetscInt_FMT " Side %" PetscInt_FMT " Point number %" PetscInt_FMT " should be in [0, %" PetscInt_FMT ")", f, s, q, T->Np); 2400 for (c = 0; c < Ncf; ++c) u[fOffset + c] = 0.0; 2401 for (d = 0; d < dE * Ncf; ++d) u_x[fOffset * dE + d] = 0.0; 2402 for (b = 0; b < Nbf; ++b) { 2403 for (c = 0; c < Ncf; ++c) { 2404 const PetscInt cidx = b * Ncf + c; 2405 2406 u[fOffset + c] += Bq[cidx] * coefficients[dOffset + b]; 2407 for (d = 0; d < dEt; ++d) u_x[(fOffset + c) * dE + d] += Dq[cidx * dEt + d] * coefficients[dOffset + b]; 2408 } 2409 } 2410 PetscCall(PetscFEPushforward(fe, isCohesive ? fegeom : &fegeomNbr[s], 1, &u[fOffset])); 2411 PetscCall(PetscFEPushforwardGradient(fe, isCohesive ? fegeom : &fegeomNbr[s], 1, &u_x[fOffset * dE])); 2412 if (u_t) { 2413 for (c = 0; c < Ncf; ++c) u_t[fOffset + c] = 0.0; 2414 for (b = 0; b < Nbf; ++b) { 2415 for (c = 0; c < Ncf; ++c) { 2416 const PetscInt cidx = b * Ncf + c; 2417 2418 u_t[fOffset + c] += Bq[cidx] * coefficients_t[dOffset + b]; 2419 } 2420 } 2421 PetscCall(PetscFEPushforward(fe, fegeom, 1, &u_t[fOffset])); 2422 } 2423 fOffset += Ncf; 2424 dOffset += Nbf; 2425 } 2426 } 2427 } 2428 return PETSC_SUCCESS; 2429 } 2430 2431 PetscErrorCode PetscFEEvaluateFaceFields_Internal(PetscDS prob, PetscInt field, PetscInt faceLoc, const PetscScalar coefficients[], PetscScalar u[]) 2432 { 2433 PetscFE fe; 2434 PetscTabulation Tc; 2435 PetscInt b, c; 2436 2437 if (!prob) return PETSC_SUCCESS; 2438 PetscCall(PetscDSGetDiscretization(prob, field, (PetscObject *)&fe)); 2439 PetscCall(PetscFEGetFaceCentroidTabulation(fe, &Tc)); 2440 { 2441 const PetscReal *faceBasis = Tc->T[0]; 2442 const PetscInt Nb = Tc->Nb; 2443 const PetscInt Nc = Tc->Nc; 2444 2445 for (c = 0; c < Nc; ++c) u[c] = 0.0; 2446 for (b = 0; b < Nb; ++b) { 2447 for (c = 0; c < Nc; ++c) u[c] += coefficients[b] * faceBasis[(faceLoc * Nb + b) * Nc + c]; 2448 } 2449 } 2450 return PETSC_SUCCESS; 2451 } 2452 2453 PetscErrorCode PetscFEUpdateElementVec_Internal(PetscFE fe, PetscTabulation T, PetscInt r, PetscScalar tmpBasis[], PetscScalar tmpBasisDer[], PetscInt e, PetscFEGeom *fegeom, PetscScalar f0[], PetscScalar f1[], PetscScalar elemVec[]) 2454 { 2455 PetscFEGeom pgeom; 2456 const PetscInt dEt = T->cdim; 2457 const PetscInt dE = fegeom->dimEmbed; 2458 const PetscInt Nq = T->Np; 2459 const PetscInt Nb = T->Nb; 2460 const PetscInt Nc = T->Nc; 2461 const PetscReal *basis = &T->T[0][r * Nq * Nb * Nc]; 2462 const PetscReal *basisDer = &T->T[1][r * Nq * Nb * Nc * dEt]; 2463 PetscInt q, b, c, d; 2464 2465 for (q = 0; q < Nq; ++q) { 2466 for (b = 0; b < Nb; ++b) { 2467 for (c = 0; c < Nc; ++c) { 2468 const PetscInt bcidx = b * Nc + c; 2469 2470 tmpBasis[bcidx] = basis[q * Nb * Nc + bcidx]; 2471 for (d = 0; d < dEt; ++d) tmpBasisDer[bcidx * dE + d] = basisDer[q * Nb * Nc * dEt + bcidx * dEt + d]; 2472 for (d = dEt; d < dE; ++d) tmpBasisDer[bcidx * dE + d] = 0.0; 2473 } 2474 } 2475 PetscCall(PetscFEGeomGetCellPoint(fegeom, e, q, &pgeom)); 2476 PetscCall(PetscFEPushforward(fe, &pgeom, Nb, tmpBasis)); 2477 PetscCall(PetscFEPushforwardGradient(fe, &pgeom, Nb, tmpBasisDer)); 2478 for (b = 0; b < Nb; ++b) { 2479 for (c = 0; c < Nc; ++c) { 2480 const PetscInt bcidx = b * Nc + c; 2481 const PetscInt qcidx = q * Nc + c; 2482 2483 elemVec[b] += tmpBasis[bcidx] * f0[qcidx]; 2484 for (d = 0; d < dE; ++d) elemVec[b] += tmpBasisDer[bcidx * dE + d] * f1[qcidx * dE + d]; 2485 } 2486 } 2487 } 2488 return PETSC_SUCCESS; 2489 } 2490 2491 PetscErrorCode PetscFEUpdateElementVec_Hybrid_Internal(PetscFE fe, PetscTabulation T, PetscInt r, PetscInt side, PetscScalar tmpBasis[], PetscScalar tmpBasisDer[], PetscFEGeom *fegeom, PetscScalar f0[], PetscScalar f1[], PetscScalar elemVec[]) 2492 { 2493 const PetscInt dE = T->cdim; 2494 const PetscInt Nq = T->Np; 2495 const PetscInt Nb = T->Nb; 2496 const PetscInt Nc = T->Nc; 2497 const PetscReal *basis = &T->T[0][r * Nq * Nb * Nc]; 2498 const PetscReal *basisDer = &T->T[1][r * Nq * Nb * Nc * dE]; 2499 2500 for (PetscInt q = 0; q < Nq; ++q) { 2501 for (PetscInt b = 0; b < Nb; ++b) { 2502 for (PetscInt c = 0; c < Nc; ++c) { 2503 const PetscInt bcidx = b * Nc + c; 2504 2505 tmpBasis[bcidx] = basis[q * Nb * Nc + bcidx]; 2506 for (PetscInt d = 0; d < dE; ++d) tmpBasisDer[bcidx * dE + d] = basisDer[q * Nb * Nc * dE + bcidx * dE + d]; 2507 } 2508 } 2509 PetscCall(PetscFEPushforward(fe, fegeom, Nb, tmpBasis)); 2510 // TODO This is currently broken since we do not pull the geometry down to the lower dimension 2511 // PetscCall(PetscFEPushforwardGradient(fe, fegeom, Nb, tmpBasisDer)); 2512 if (side == 2) { 2513 // Integrating over whole cohesive cell, so insert for both sides 2514 for (PetscInt s = 0; s < 2; ++s) { 2515 for (PetscInt b = 0; b < Nb; ++b) { 2516 for (PetscInt c = 0; c < Nc; ++c) { 2517 const PetscInt bcidx = b * Nc + c; 2518 const PetscInt qcidx = (q * 2 + s) * Nc + c; 2519 2520 elemVec[Nb * s + b] += tmpBasis[bcidx] * f0[qcidx]; 2521 for (PetscInt d = 0; d < dE; ++d) elemVec[Nb * s + b] += tmpBasisDer[bcidx * dE + d] * f1[qcidx * dE + d]; 2522 } 2523 } 2524 } 2525 } else { 2526 // Integrating over endcaps of cohesive cell, so insert for correct side 2527 for (PetscInt b = 0; b < Nb; ++b) { 2528 for (PetscInt c = 0; c < Nc; ++c) { 2529 const PetscInt bcidx = b * Nc + c; 2530 const PetscInt qcidx = q * Nc + c; 2531 2532 elemVec[Nb * side + b] += tmpBasis[bcidx] * f0[qcidx]; 2533 for (PetscInt d = 0; d < dE; ++d) elemVec[Nb * side + b] += tmpBasisDer[bcidx * dE + d] * f1[qcidx * dE + d]; 2534 } 2535 } 2536 } 2537 } 2538 return PETSC_SUCCESS; 2539 } 2540 2541 #define petsc_elemmat_kernel_g1(_NbI, _NcI, _NbJ, _NcJ, _dE) \ 2542 do { \ 2543 for (PetscInt fc = 0; fc < (_NcI); ++fc) { \ 2544 for (PetscInt gc = 0; gc < (_NcJ); ++gc) { \ 2545 const PetscScalar *G = g1 + (fc * (_NcJ) + gc) * _dE; \ 2546 for (PetscInt f = 0; f < (_NbI); ++f) { \ 2547 const PetscScalar tBIv = tmpBasisI[f * (_NcI) + fc]; \ 2548 for (PetscInt g = 0; g < (_NbJ); ++g) { \ 2549 const PetscScalar *tBDJ = tmpBasisDerJ + (g * (_NcJ) + gc) * (_dE); \ 2550 PetscScalar s = 0.0; \ 2551 for (PetscInt df = 0; df < _dE; ++df) { s += G[df] * tBDJ[df]; } \ 2552 elemMat[(offsetI + f) * totDim + (offsetJ + g)] += s * tBIv; \ 2553 } \ 2554 } \ 2555 } \ 2556 } \ 2557 } while (0) 2558 2559 #define petsc_elemmat_kernel_g2(_NbI, _NcI, _NbJ, _NcJ, _dE) \ 2560 do { \ 2561 for (PetscInt gc = 0; gc < (_NcJ); ++gc) { \ 2562 for (PetscInt fc = 0; fc < (_NcI); ++fc) { \ 2563 const PetscScalar *G = g2 + (fc * (_NcJ) + gc) * _dE; \ 2564 for (PetscInt g = 0; g < (_NbJ); ++g) { \ 2565 const PetscScalar tBJv = tmpBasisJ[g * (_NcJ) + gc]; \ 2566 for (PetscInt f = 0; f < (_NbI); ++f) { \ 2567 const PetscScalar *tBDI = tmpBasisDerI + (f * (_NcI) + fc) * (_dE); \ 2568 PetscScalar s = 0.0; \ 2569 for (PetscInt df = 0; df < _dE; ++df) { s += tBDI[df] * G[df]; } \ 2570 elemMat[(offsetI + f) * totDim + (offsetJ + g)] += s * tBJv; \ 2571 } \ 2572 } \ 2573 } \ 2574 } \ 2575 } while (0) 2576 2577 #define petsc_elemmat_kernel_g3(_NbI, _NcI, _NbJ, _NcJ, _dE) \ 2578 do { \ 2579 for (PetscInt fc = 0; fc < (_NcI); ++fc) { \ 2580 for (PetscInt gc = 0; gc < (_NcJ); ++gc) { \ 2581 const PetscScalar *G = g3 + (fc * (_NcJ) + gc) * (_dE) * (_dE); \ 2582 for (PetscInt f = 0; f < (_NbI); ++f) { \ 2583 const PetscScalar *tBDI = tmpBasisDerI + (f * (_NcI) + fc) * (_dE); \ 2584 for (PetscInt g = 0; g < (_NbJ); ++g) { \ 2585 PetscScalar s = 0.0; \ 2586 const PetscScalar *tBDJ = tmpBasisDerJ + (g * (_NcJ) + gc) * (_dE); \ 2587 for (PetscInt df = 0; df < (_dE); ++df) { \ 2588 for (PetscInt dg = 0; dg < (_dE); ++dg) { s += tBDI[df] * G[df * (_dE) + dg] * tBDJ[dg]; } \ 2589 } \ 2590 elemMat[(offsetI + f) * totDim + (offsetJ + g)] += s; \ 2591 } \ 2592 } \ 2593 } \ 2594 } \ 2595 } while (0) 2596 2597 PetscErrorCode PetscFEUpdateElementMat_Internal(PetscFE feI, PetscFE feJ, PetscInt r, PetscInt q, PetscTabulation TI, PetscScalar tmpBasisI[], PetscScalar tmpBasisDerI[], PetscTabulation TJ, PetscScalar tmpBasisJ[], PetscScalar tmpBasisDerJ[], PetscFEGeom *fegeom, const PetscScalar g0[], const PetscScalar g1[], const PetscScalar g2[], const PetscScalar g3[], PetscInt totDim, PetscInt offsetI, PetscInt offsetJ, PetscScalar elemMat[]) 2598 { 2599 const PetscInt cdim = TI->cdim; 2600 const PetscInt dE = fegeom->dimEmbed; 2601 const PetscInt NqI = TI->Np; 2602 const PetscInt NbI = TI->Nb; 2603 const PetscInt NcI = TI->Nc; 2604 const PetscReal *basisI = &TI->T[0][(r * NqI + q) * NbI * NcI]; 2605 const PetscReal *basisDerI = &TI->T[1][(r * NqI + q) * NbI * NcI * cdim]; 2606 const PetscInt NqJ = TJ->Np; 2607 const PetscInt NbJ = TJ->Nb; 2608 const PetscInt NcJ = TJ->Nc; 2609 const PetscReal *basisJ = &TJ->T[0][(r * NqJ + q) * NbJ * NcJ]; 2610 const PetscReal *basisDerJ = &TJ->T[1][(r * NqJ + q) * NbJ * NcJ * cdim]; 2611 2612 for (PetscInt f = 0; f < NbI; ++f) { 2613 for (PetscInt fc = 0; fc < NcI; ++fc) { 2614 const PetscInt fidx = f * NcI + fc; /* Test function basis index */ 2615 2616 tmpBasisI[fidx] = basisI[fidx]; 2617 for (PetscInt df = 0; df < cdim; ++df) tmpBasisDerI[fidx * dE + df] = basisDerI[fidx * cdim + df]; 2618 } 2619 } 2620 PetscCall(PetscFEPushforward(feI, fegeom, NbI, tmpBasisI)); 2621 PetscCall(PetscFEPushforwardGradient(feI, fegeom, NbI, tmpBasisDerI)); 2622 if (feI != feJ) { 2623 for (PetscInt g = 0; g < NbJ; ++g) { 2624 for (PetscInt gc = 0; gc < NcJ; ++gc) { 2625 const PetscInt gidx = g * NcJ + gc; /* Trial function basis index */ 2626 2627 tmpBasisJ[gidx] = basisJ[gidx]; 2628 for (PetscInt dg = 0; dg < cdim; ++dg) tmpBasisDerJ[gidx * dE + dg] = basisDerJ[gidx * cdim + dg]; 2629 } 2630 } 2631 PetscCall(PetscFEPushforward(feJ, fegeom, NbJ, tmpBasisJ)); 2632 PetscCall(PetscFEPushforwardGradient(feJ, fegeom, NbJ, tmpBasisDerJ)); 2633 } else { 2634 tmpBasisJ = tmpBasisI; 2635 tmpBasisDerJ = tmpBasisDerI; 2636 } 2637 if (PetscUnlikely(g0)) { 2638 for (PetscInt f = 0; f < NbI; ++f) { 2639 const PetscInt i = offsetI + f; /* Element matrix row */ 2640 2641 for (PetscInt fc = 0; fc < NcI; ++fc) { 2642 const PetscScalar bI = tmpBasisI[f * NcI + fc]; /* Test function basis value */ 2643 2644 for (PetscInt g = 0; g < NbJ; ++g) { 2645 const PetscInt j = offsetJ + g; /* Element matrix column */ 2646 const PetscInt fOff = i * totDim + j; 2647 2648 for (PetscInt gc = 0; gc < NcJ; ++gc) { elemMat[fOff] += bI * g0[fc * NcJ + gc] * tmpBasisJ[g * NcJ + gc]; } 2649 } 2650 } 2651 } 2652 } 2653 if (PetscUnlikely(g1)) { 2654 #if 1 2655 if (dE == 2) { 2656 petsc_elemmat_kernel_g1(NbI, NcI, NbJ, NcJ, 2); 2657 } else if (dE == 3) { 2658 petsc_elemmat_kernel_g1(NbI, NcI, NbJ, NcJ, 3); 2659 } else { 2660 petsc_elemmat_kernel_g1(NbI, NcI, NbJ, NcJ, dE); 2661 } 2662 #else 2663 for (PetscInt f = 0; f < NbI; ++f) { 2664 const PetscInt i = offsetI + f; /* Element matrix row */ 2665 2666 for (PetscInt fc = 0; fc < NcI; ++fc) { 2667 const PetscScalar bI = tmpBasisI[f * NcI + fc]; /* Test function basis value */ 2668 2669 for (PetscInt g = 0; g < NbJ; ++g) { 2670 const PetscInt j = offsetJ + g; /* Element matrix column */ 2671 const PetscInt fOff = i * totDim + j; 2672 2673 for (PetscInt gc = 0; gc < NcJ; ++gc) { 2674 const PetscInt gidx = g * NcJ + gc; /* Trial function basis index */ 2675 2676 for (PetscInt df = 0; df < dE; ++df) { elemMat[fOff] += bI * g1[(fc * NcJ + gc) * dE + df] * tmpBasisDerJ[gidx * dE + df]; } 2677 } 2678 } 2679 } 2680 } 2681 #endif 2682 } 2683 if (PetscUnlikely(g2)) { 2684 #if 1 2685 if (dE == 2) { 2686 petsc_elemmat_kernel_g2(NbI, NcI, NbJ, NcJ, 2); 2687 } else if (dE == 3) { 2688 petsc_elemmat_kernel_g2(NbI, NcI, NbJ, NcJ, 3); 2689 } else { 2690 petsc_elemmat_kernel_g2(NbI, NcI, NbJ, NcJ, dE); 2691 } 2692 #else 2693 for (PetscInt g = 0; g < NbJ; ++g) { 2694 const PetscInt j = offsetJ + g; /* Element matrix column */ 2695 2696 for (PetscInt gc = 0; gc < NcJ; ++gc) { 2697 const PetscScalar bJ = tmpBasisJ[g * NcJ + gc]; /* Trial function basis value */ 2698 2699 for (PetscInt f = 0; f < NbI; ++f) { 2700 const PetscInt i = offsetI + f; /* Element matrix row */ 2701 const PetscInt fOff = i * totDim + j; 2702 2703 for (PetscInt fc = 0; fc < NcI; ++fc) { 2704 const PetscInt fidx = f * NcI + fc; /* Test function basis index */ 2705 2706 for (PetscInt df = 0; df < dE; ++df) { elemMat[fOff] += tmpBasisDerI[fidx * dE + df] * g2[(fc * NcJ + gc) * dE + df] * bJ; } 2707 } 2708 } 2709 } 2710 } 2711 #endif 2712 } 2713 if (PetscUnlikely(g3)) { 2714 #if 1 2715 if (dE == 2) { 2716 petsc_elemmat_kernel_g3(NbI, NcI, NbJ, NcJ, 2); 2717 } else if (dE == 3) { 2718 petsc_elemmat_kernel_g3(NbI, NcI, NbJ, NcJ, 3); 2719 } else { 2720 petsc_elemmat_kernel_g3(NbI, NcI, NbJ, NcJ, dE); 2721 } 2722 #else 2723 for (PetscInt f = 0; f < NbI; ++f) { 2724 const PetscInt i = offsetI + f; /* Element matrix row */ 2725 2726 for (PetscInt fc = 0; fc < NcI; ++fc) { 2727 const PetscInt fidx = f * NcI + fc; /* Test function basis index */ 2728 2729 for (PetscInt g = 0; g < NbJ; ++g) { 2730 const PetscInt j = offsetJ + g; /* Element matrix column */ 2731 const PetscInt fOff = i * totDim + j; 2732 2733 for (PetscInt gc = 0; gc < NcJ; ++gc) { 2734 const PetscInt gidx = g * NcJ + gc; /* Trial function basis index */ 2735 2736 for (PetscInt df = 0; df < dE; ++df) { 2737 for (PetscInt dg = 0; dg < dE; ++dg) { elemMat[fOff] += tmpBasisDerI[fidx * dE + df] * g3[((fc * NcJ + gc) * dE + df) * dE + dg] * tmpBasisDerJ[gidx * dE + dg]; } 2738 } 2739 } 2740 } 2741 } 2742 } 2743 #endif 2744 } 2745 return PETSC_SUCCESS; 2746 } 2747 2748 #undef petsc_elemmat_kernel_g1 2749 #undef petsc_elemmat_kernel_g2 2750 #undef petsc_elemmat_kernel_g3 2751 2752 PetscErrorCode PetscFEUpdateElementMat_Hybrid_Internal(PetscFE feI, PetscBool isHybridI, PetscFE feJ, PetscBool isHybridJ, PetscInt r, PetscInt s, PetscInt t, PetscInt q, PetscTabulation TI, PetscScalar tmpBasisI[], PetscScalar tmpBasisDerI[], PetscTabulation TJ, PetscScalar tmpBasisJ[], PetscScalar tmpBasisDerJ[], PetscFEGeom *fegeom, const PetscScalar g0[], const PetscScalar g1[], const PetscScalar g2[], const PetscScalar g3[], PetscInt eOffset, PetscInt totDim, PetscInt offsetI, PetscInt offsetJ, PetscScalar elemMat[]) 2753 { 2754 const PetscInt dE = TI->cdim; 2755 const PetscInt NqI = TI->Np; 2756 const PetscInt NbI = TI->Nb; 2757 const PetscInt NcI = TI->Nc; 2758 const PetscReal *basisI = &TI->T[0][(r * NqI + q) * NbI * NcI]; 2759 const PetscReal *basisDerI = &TI->T[1][(r * NqI + q) * NbI * NcI * dE]; 2760 const PetscInt NqJ = TJ->Np; 2761 const PetscInt NbJ = TJ->Nb; 2762 const PetscInt NcJ = TJ->Nc; 2763 const PetscReal *basisJ = &TJ->T[0][(r * NqJ + q) * NbJ * NcJ]; 2764 const PetscReal *basisDerJ = &TJ->T[1][(r * NqJ + q) * NbJ * NcJ * dE]; 2765 const PetscInt so = isHybridI ? 0 : s; 2766 const PetscInt to = isHybridJ ? 0 : t; 2767 PetscInt f, fc, g, gc, df, dg; 2768 2769 for (f = 0; f < NbI; ++f) { 2770 for (fc = 0; fc < NcI; ++fc) { 2771 const PetscInt fidx = f * NcI + fc; /* Test function basis index */ 2772 2773 tmpBasisI[fidx] = basisI[fidx]; 2774 for (df = 0; df < dE; ++df) tmpBasisDerI[fidx * dE + df] = basisDerI[fidx * dE + df]; 2775 } 2776 } 2777 PetscCall(PetscFEPushforward(feI, fegeom, NbI, tmpBasisI)); 2778 PetscCall(PetscFEPushforwardGradient(feI, fegeom, NbI, tmpBasisDerI)); 2779 for (g = 0; g < NbJ; ++g) { 2780 for (gc = 0; gc < NcJ; ++gc) { 2781 const PetscInt gidx = g * NcJ + gc; /* Trial function basis index */ 2782 2783 tmpBasisJ[gidx] = basisJ[gidx]; 2784 for (dg = 0; dg < dE; ++dg) tmpBasisDerJ[gidx * dE + dg] = basisDerJ[gidx * dE + dg]; 2785 } 2786 } 2787 PetscCall(PetscFEPushforward(feJ, fegeom, NbJ, tmpBasisJ)); 2788 // TODO This is currently broken since we do not pull the geometry down to the lower dimension 2789 // PetscCall(PetscFEPushforwardGradient(feJ, fegeom, NbJ, tmpBasisDerJ)); 2790 for (f = 0; f < NbI; ++f) { 2791 for (fc = 0; fc < NcI; ++fc) { 2792 const PetscInt fidx = f * NcI + fc; /* Test function basis index */ 2793 const PetscInt i = offsetI + NbI * so + f; /* Element matrix row */ 2794 for (g = 0; g < NbJ; ++g) { 2795 for (gc = 0; gc < NcJ; ++gc) { 2796 const PetscInt gidx = g * NcJ + gc; /* Trial function basis index */ 2797 const PetscInt j = offsetJ + NbJ * to + g; /* Element matrix column */ 2798 const PetscInt fOff = eOffset + i * totDim + j; 2799 2800 elemMat[fOff] += tmpBasisI[fidx] * g0[fc * NcJ + gc] * tmpBasisJ[gidx]; 2801 for (df = 0; df < dE; ++df) { 2802 elemMat[fOff] += tmpBasisI[fidx] * g1[(fc * NcJ + gc) * dE + df] * tmpBasisDerJ[gidx * dE + df]; 2803 elemMat[fOff] += tmpBasisDerI[fidx * dE + df] * g2[(fc * NcJ + gc) * dE + df] * tmpBasisJ[gidx]; 2804 for (dg = 0; dg < dE; ++dg) elemMat[fOff] += tmpBasisDerI[fidx * dE + df] * g3[((fc * NcJ + gc) * dE + df) * dE + dg] * tmpBasisDerJ[gidx * dE + dg]; 2805 } 2806 } 2807 } 2808 } 2809 } 2810 return PETSC_SUCCESS; 2811 } 2812 2813 PetscErrorCode PetscFECreateCellGeometry(PetscFE fe, PetscQuadrature quad, PetscFEGeom *cgeom) 2814 { 2815 PetscDualSpace dsp; 2816 DM dm; 2817 PetscQuadrature quadDef; 2818 PetscInt dim, cdim, Nq; 2819 2820 PetscFunctionBegin; 2821 PetscCall(PetscFEGetDualSpace(fe, &dsp)); 2822 PetscCall(PetscDualSpaceGetDM(dsp, &dm)); 2823 PetscCall(DMGetDimension(dm, &dim)); 2824 PetscCall(DMGetCoordinateDim(dm, &cdim)); 2825 PetscCall(PetscFEGetQuadrature(fe, &quadDef)); 2826 quad = quad ? quad : quadDef; 2827 PetscCall(PetscQuadratureGetData(quad, NULL, NULL, &Nq, NULL, NULL)); 2828 PetscCall(PetscMalloc1(Nq * cdim, &cgeom->v)); 2829 PetscCall(PetscMalloc1(Nq * cdim * cdim, &cgeom->J)); 2830 PetscCall(PetscMalloc1(Nq * cdim * cdim, &cgeom->invJ)); 2831 PetscCall(PetscMalloc1(Nq, &cgeom->detJ)); 2832 cgeom->dim = dim; 2833 cgeom->dimEmbed = cdim; 2834 cgeom->numCells = 1; 2835 cgeom->numPoints = Nq; 2836 PetscCall(DMPlexComputeCellGeometryFEM(dm, 0, quad, cgeom->v, cgeom->J, cgeom->invJ, cgeom->detJ)); 2837 PetscFunctionReturn(PETSC_SUCCESS); 2838 } 2839 2840 PetscErrorCode PetscFEDestroyCellGeometry(PetscFE fe, PetscFEGeom *cgeom) 2841 { 2842 PetscFunctionBegin; 2843 PetscCall(PetscFree(cgeom->v)); 2844 PetscCall(PetscFree(cgeom->J)); 2845 PetscCall(PetscFree(cgeom->invJ)); 2846 PetscCall(PetscFree(cgeom->detJ)); 2847 PetscFunctionReturn(PETSC_SUCCESS); 2848 } 2849 2850 #if 0 2851 PetscErrorCode PetscFEUpdateElementMat_Internal_SparseIndices(PetscTabulation TI, PetscTabulation TJ, PetscInt dimEmbed, const PetscInt g0[], const PetscInt g1[], const PetscInt g2[], const PetscInt g3[], PetscInt totDim, PetscInt offsetI, PetscInt offsetJ, PetscInt *n_g0, PetscInt **g0_idxs_out, PetscInt *n_g1, PetscInt **g1_idxs_out, PetscInt *n_g2, PetscInt **g2_idxs_out, PetscInt *n_g3, PetscInt **g3_idxs_out) 2852 { 2853 const PetscInt dE = dimEmbed; 2854 const PetscInt NbI = TI->Nb; 2855 const PetscInt NcI = TI->Nc; 2856 const PetscInt NbJ = TJ->Nb; 2857 const PetscInt NcJ = TJ->Nc; 2858 PetscBool has_g0 = g0 ? PETSC_TRUE : PETSC_FALSE; 2859 PetscBool has_g1 = g1 ? PETSC_TRUE : PETSC_FALSE; 2860 PetscBool has_g2 = g2 ? PETSC_TRUE : PETSC_FALSE; 2861 PetscBool has_g3 = g3 ? PETSC_TRUE : PETSC_FALSE; 2862 PetscInt *g0_idxs = NULL, *g1_idxs = NULL, *g2_idxs = NULL, *g3_idxs = NULL; 2863 PetscInt g0_i, g1_i, g2_i, g3_i; 2864 2865 PetscFunctionBegin; 2866 g0_i = g1_i = g2_i = g3_i = 0; 2867 if (has_g0) 2868 for (PetscInt i = 0; i < NcI * NcJ; i++) 2869 if (g0[i]) g0_i += NbI * NbJ; 2870 if (has_g1) 2871 for (PetscInt i = 0; i < NcI * NcJ * dE; i++) 2872 if (g1[i]) g1_i += NbI * NbJ; 2873 if (has_g2) 2874 for (PetscInt i = 0; i < NcI * NcJ * dE; i++) 2875 if (g2[i]) g2_i += NbI * NbJ; 2876 if (has_g3) 2877 for (PetscInt i = 0; i < NcI * NcJ * dE * dE; i++) 2878 if (g3[i]) g3_i += NbI * NbJ; 2879 if (g0_i == NbI * NbJ * NcI * NcJ) g0_i = 0; 2880 if (g1_i == NbI * NbJ * NcI * NcJ * dE) g1_i = 0; 2881 if (g2_i == NbI * NbJ * NcI * NcJ * dE) g2_i = 0; 2882 if (g3_i == NbI * NbJ * NcI * NcJ * dE * dE) g3_i = 0; 2883 has_g0 = g0_i ? PETSC_TRUE : PETSC_FALSE; 2884 has_g1 = g1_i ? PETSC_TRUE : PETSC_FALSE; 2885 has_g2 = g2_i ? PETSC_TRUE : PETSC_FALSE; 2886 has_g3 = g3_i ? PETSC_TRUE : PETSC_FALSE; 2887 if (has_g0) PetscCall(PetscMalloc1(4 * g0_i, &g0_idxs)); 2888 if (has_g1) PetscCall(PetscMalloc1(4 * g1_i, &g1_idxs)); 2889 if (has_g2) PetscCall(PetscMalloc1(4 * g2_i, &g2_idxs)); 2890 if (has_g3) PetscCall(PetscMalloc1(4 * g3_i, &g3_idxs)); 2891 g0_i = g1_i = g2_i = g3_i = 0; 2892 2893 for (PetscInt f = 0; f < NbI; ++f) { 2894 const PetscInt i = offsetI + f; /* Element matrix row */ 2895 for (PetscInt fc = 0; fc < NcI; ++fc) { 2896 const PetscInt fidx = f * NcI + fc; /* Test function basis index */ 2897 2898 for (PetscInt g = 0; g < NbJ; ++g) { 2899 const PetscInt j = offsetJ + g; /* Element matrix column */ 2900 const PetscInt fOff = i * totDim + j; 2901 for (PetscInt gc = 0; gc < NcJ; ++gc) { 2902 const PetscInt gidx = g * NcJ + gc; /* Trial function basis index */ 2903 2904 if (has_g0) { 2905 if (g0[fc * NcJ + gc]) { 2906 g0_idxs[4 * g0_i + 0] = fidx; 2907 g0_idxs[4 * g0_i + 1] = fc * NcJ + gc; 2908 g0_idxs[4 * g0_i + 2] = gidx; 2909 g0_idxs[4 * g0_i + 3] = fOff; 2910 g0_i++; 2911 } 2912 } 2913 2914 for (PetscInt df = 0; df < dE; ++df) { 2915 if (has_g1) { 2916 if (g1[(fc * NcJ + gc) * dE + df]) { 2917 g1_idxs[4 * g1_i + 0] = fidx; 2918 g1_idxs[4 * g1_i + 1] = (fc * NcJ + gc) * dE + df; 2919 g1_idxs[4 * g1_i + 2] = gidx * dE + df; 2920 g1_idxs[4 * g1_i + 3] = fOff; 2921 g1_i++; 2922 } 2923 } 2924 if (has_g2) { 2925 if (g2[(fc * NcJ + gc) * dE + df]) { 2926 g2_idxs[4 * g2_i + 0] = fidx * dE + df; 2927 g2_idxs[4 * g2_i + 1] = (fc * NcJ + gc) * dE + df; 2928 g2_idxs[4 * g2_i + 2] = gidx; 2929 g2_idxs[4 * g2_i + 3] = fOff; 2930 g2_i++; 2931 } 2932 } 2933 if (has_g3) { 2934 for (PetscInt dg = 0; dg < dE; ++dg) { 2935 if (g3[((fc * NcJ + gc) * dE + df) * dE + dg]) { 2936 g3_idxs[4 * g3_i + 0] = fidx * dE + df; 2937 g3_idxs[4 * g3_i + 1] = ((fc * NcJ + gc) * dE + df) * dE + dg; 2938 g3_idxs[4 * g3_i + 2] = gidx * dE + dg; 2939 g3_idxs[4 * g3_i + 3] = fOff; 2940 g3_i++; 2941 } 2942 } 2943 } 2944 } 2945 } 2946 } 2947 } 2948 } 2949 *n_g0 = g0_i; 2950 *n_g1 = g1_i; 2951 *n_g2 = g2_i; 2952 *n_g3 = g3_i; 2953 2954 *g0_idxs_out = g0_idxs; 2955 *g1_idxs_out = g1_idxs; 2956 *g2_idxs_out = g2_idxs; 2957 *g3_idxs_out = g3_idxs; 2958 PetscFunctionReturn(PETSC_SUCCESS); 2959 } 2960 2961 //example HOW TO USE 2962 for (PetscInt i = 0; i < g0_sparse_n; i++) { 2963 PetscInt bM = g0_sparse_idxs[4 * i + 0]; 2964 PetscInt bN = g0_sparse_idxs[4 * i + 1]; 2965 PetscInt bK = g0_sparse_idxs[4 * i + 2]; 2966 PetscInt bO = g0_sparse_idxs[4 * i + 3]; 2967 elemMat[bO] += tmpBasisI[bM] * g0[bN] * tmpBasisJ[bK]; 2968 } 2969 #endif 2970