137045ce4SJed Brown /* Discretization tools */ 237045ce4SJed Brown 30c35b76eSJed Brown #include <petscdt.h> /*I "petscdt.h" I*/ 437045ce4SJed Brown #include <petscblaslapack.h> 5af0996ceSBarry Smith #include <petsc/private/petscimpl.h> 6af0996ceSBarry Smith #include <petsc/private/dtimpl.h> 7665c2dedSJed Brown #include <petscviewer.h> 859804f93SMatthew G. Knepley #include <petscdmplex.h> 959804f93SMatthew G. Knepley #include <petscdmshell.h> 1037045ce4SJed Brown 1198c04793SMatthew G. Knepley #if defined(PETSC_HAVE_MPFR) 1298c04793SMatthew G. Knepley #include <mpfr.h> 1398c04793SMatthew G. Knepley #endif 1498c04793SMatthew G. Knepley 15ea78f98cSLisandro Dalcin const char *const PetscDTNodeTypes[] = {"gaussjacobi", "equispaced", "tanhsinh", "PETSCDTNODES_", NULL}; 16d4afb720SToby Isaac 17e6a796c3SToby Isaac static PetscBool GolubWelschCite = PETSC_FALSE; 18e6a796c3SToby Isaac const char GolubWelschCitation[] = "@article{GolubWelsch1969,\n" 190bfcf5a5SMatthew G. Knepley " author = {Golub and Welsch},\n" 200bfcf5a5SMatthew G. Knepley " title = {Calculation of Quadrature Rules},\n" 210bfcf5a5SMatthew G. Knepley " journal = {Math. Comp.},\n" 220bfcf5a5SMatthew G. Knepley " volume = {23},\n" 230bfcf5a5SMatthew G. Knepley " number = {106},\n" 240bfcf5a5SMatthew G. Knepley " pages = {221--230},\n" 250bfcf5a5SMatthew G. Knepley " year = {1969}\n}\n"; 260bfcf5a5SMatthew G. Knepley 27c4762a1bSJed Brown /* Numerical tests in src/dm/dt/tests/ex1.c show that when computing the nodes and weights of Gauss-Jacobi 2894e21283SToby Isaac quadrature rules: 29e6a796c3SToby Isaac 3094e21283SToby Isaac - in double precision, Newton's method and Golub & Welsch both work for moderate degrees (< 100), 3194e21283SToby Isaac - in single precision, Newton's method starts producing incorrect roots around n = 15, but 3294e21283SToby Isaac the weights from Golub & Welsch become a problem before then: they produces errors 3394e21283SToby Isaac in computing the Jacobi-polynomial Gram matrix around n = 6. 3494e21283SToby Isaac 3594e21283SToby Isaac So we default to Newton's method (required fewer dependencies) */ 3694e21283SToby Isaac PetscBool PetscDTGaussQuadratureNewton_Internal = PETSC_TRUE; 372cd22861SMatthew G. Knepley 382cd22861SMatthew G. Knepley PetscClassId PETSCQUADRATURE_CLASSID = 0; 392cd22861SMatthew G. Knepley 4040d8ff71SMatthew G. Knepley /*@ 4140d8ff71SMatthew G. Knepley PetscQuadratureCreate - Create a PetscQuadrature object 4240d8ff71SMatthew G. Knepley 43d083f849SBarry Smith Collective 4440d8ff71SMatthew G. Knepley 4540d8ff71SMatthew G. Knepley Input Parameter: 4640d8ff71SMatthew G. Knepley . comm - The communicator for the PetscQuadrature object 4740d8ff71SMatthew G. Knepley 4840d8ff71SMatthew G. Knepley Output Parameter: 4940d8ff71SMatthew G. Knepley . q - The PetscQuadrature object 5040d8ff71SMatthew G. Knepley 5140d8ff71SMatthew G. Knepley Level: beginner 5240d8ff71SMatthew G. Knepley 5340d8ff71SMatthew G. Knepley .seealso: PetscQuadratureDestroy(), PetscQuadratureGetData() 5440d8ff71SMatthew G. Knepley @*/ 5521454ff5SMatthew G. Knepley PetscErrorCode PetscQuadratureCreate(MPI_Comm comm, PetscQuadrature *q) 5621454ff5SMatthew G. Knepley { 5721454ff5SMatthew G. Knepley PetscErrorCode ierr; 5821454ff5SMatthew G. Knepley 5921454ff5SMatthew G. Knepley PetscFunctionBegin; 6021454ff5SMatthew G. Knepley PetscValidPointer(q, 2); 612cd22861SMatthew G. Knepley ierr = DMInitializePackage();CHKERRQ(ierr); 622cd22861SMatthew G. Knepley ierr = PetscHeaderCreate(*q,PETSCQUADRATURE_CLASSID,"PetscQuadrature","Quadrature","DT",comm,PetscQuadratureDestroy,PetscQuadratureView);CHKERRQ(ierr); 6321454ff5SMatthew G. Knepley (*q)->dim = -1; 64a6b92713SMatthew G. Knepley (*q)->Nc = 1; 65bcede257SMatthew G. Knepley (*q)->order = -1; 6621454ff5SMatthew G. Knepley (*q)->numPoints = 0; 6721454ff5SMatthew G. Knepley (*q)->points = NULL; 6821454ff5SMatthew G. Knepley (*q)->weights = NULL; 6921454ff5SMatthew G. Knepley PetscFunctionReturn(0); 7021454ff5SMatthew G. Knepley } 7121454ff5SMatthew G. Knepley 72c9638911SMatthew G. Knepley /*@ 73c9638911SMatthew G. Knepley PetscQuadratureDuplicate - Create a deep copy of the PetscQuadrature object 74c9638911SMatthew G. Knepley 75d083f849SBarry Smith Collective on q 76c9638911SMatthew G. Knepley 77c9638911SMatthew G. Knepley Input Parameter: 78c9638911SMatthew G. Knepley . q - The PetscQuadrature object 79c9638911SMatthew G. Knepley 80c9638911SMatthew G. Knepley Output Parameter: 81c9638911SMatthew G. Knepley . r - The new PetscQuadrature object 82c9638911SMatthew G. Knepley 83c9638911SMatthew G. Knepley Level: beginner 84c9638911SMatthew G. Knepley 85c9638911SMatthew G. Knepley .seealso: PetscQuadratureCreate(), PetscQuadratureDestroy(), PetscQuadratureGetData() 86c9638911SMatthew G. Knepley @*/ 87c9638911SMatthew G. Knepley PetscErrorCode PetscQuadratureDuplicate(PetscQuadrature q, PetscQuadrature *r) 88c9638911SMatthew G. Knepley { 89a6b92713SMatthew G. Knepley PetscInt order, dim, Nc, Nq; 90c9638911SMatthew G. Knepley const PetscReal *points, *weights; 91c9638911SMatthew G. Knepley PetscReal *p, *w; 92c9638911SMatthew G. Knepley PetscErrorCode ierr; 93c9638911SMatthew G. Knepley 94c9638911SMatthew G. Knepley PetscFunctionBegin; 95064a246eSJacob Faibussowitsch PetscValidPointer(q, 1); 96c9638911SMatthew G. Knepley ierr = PetscQuadratureCreate(PetscObjectComm((PetscObject) q), r);CHKERRQ(ierr); 97c9638911SMatthew G. Knepley ierr = PetscQuadratureGetOrder(q, &order);CHKERRQ(ierr); 98c9638911SMatthew G. Knepley ierr = PetscQuadratureSetOrder(*r, order);CHKERRQ(ierr); 99a6b92713SMatthew G. Knepley ierr = PetscQuadratureGetData(q, &dim, &Nc, &Nq, &points, &weights);CHKERRQ(ierr); 100c9638911SMatthew G. Knepley ierr = PetscMalloc1(Nq*dim, &p);CHKERRQ(ierr); 101f0a0bfafSMatthew G. Knepley ierr = PetscMalloc1(Nq*Nc, &w);CHKERRQ(ierr); 102580bdb30SBarry Smith ierr = PetscArraycpy(p, points, Nq*dim);CHKERRQ(ierr); 103580bdb30SBarry Smith ierr = PetscArraycpy(w, weights, Nc * Nq);CHKERRQ(ierr); 104a6b92713SMatthew G. Knepley ierr = PetscQuadratureSetData(*r, dim, Nc, Nq, p, w);CHKERRQ(ierr); 105c9638911SMatthew G. Knepley PetscFunctionReturn(0); 106c9638911SMatthew G. Knepley } 107c9638911SMatthew G. Knepley 10840d8ff71SMatthew G. Knepley /*@ 10940d8ff71SMatthew G. Knepley PetscQuadratureDestroy - Destroys a PetscQuadrature object 11040d8ff71SMatthew G. Knepley 111d083f849SBarry Smith Collective on q 11240d8ff71SMatthew G. Knepley 11340d8ff71SMatthew G. Knepley Input Parameter: 11440d8ff71SMatthew G. Knepley . q - The PetscQuadrature object 11540d8ff71SMatthew G. Knepley 11640d8ff71SMatthew G. Knepley Level: beginner 11740d8ff71SMatthew G. Knepley 11840d8ff71SMatthew G. Knepley .seealso: PetscQuadratureCreate(), PetscQuadratureGetData() 11940d8ff71SMatthew G. Knepley @*/ 120bfa639d9SMatthew G. Knepley PetscErrorCode PetscQuadratureDestroy(PetscQuadrature *q) 121bfa639d9SMatthew G. Knepley { 122bfa639d9SMatthew G. Knepley PetscErrorCode ierr; 123bfa639d9SMatthew G. Knepley 124bfa639d9SMatthew G. Knepley PetscFunctionBegin; 12521454ff5SMatthew G. Knepley if (!*q) PetscFunctionReturn(0); 1262cd22861SMatthew G. Knepley PetscValidHeaderSpecific((*q),PETSCQUADRATURE_CLASSID,1); 12721454ff5SMatthew G. Knepley if (--((PetscObject)(*q))->refct > 0) { 12821454ff5SMatthew G. Knepley *q = NULL; 12921454ff5SMatthew G. Knepley PetscFunctionReturn(0); 13021454ff5SMatthew G. Knepley } 13121454ff5SMatthew G. Knepley ierr = PetscFree((*q)->points);CHKERRQ(ierr); 13221454ff5SMatthew G. Knepley ierr = PetscFree((*q)->weights);CHKERRQ(ierr); 13321454ff5SMatthew G. Knepley ierr = PetscHeaderDestroy(q);CHKERRQ(ierr); 13421454ff5SMatthew G. Knepley PetscFunctionReturn(0); 13521454ff5SMatthew G. Knepley } 13621454ff5SMatthew G. Knepley 137bcede257SMatthew G. Knepley /*@ 138a6b92713SMatthew G. Knepley PetscQuadratureGetOrder - Return the order of the method 139bcede257SMatthew G. Knepley 140bcede257SMatthew G. Knepley Not collective 141bcede257SMatthew G. Knepley 142bcede257SMatthew G. Knepley Input Parameter: 143bcede257SMatthew G. Knepley . q - The PetscQuadrature object 144bcede257SMatthew G. Knepley 145bcede257SMatthew G. Knepley Output Parameter: 146bcede257SMatthew G. Knepley . order - The order of the quadrature, i.e. the highest degree polynomial that is exactly integrated 147bcede257SMatthew G. Knepley 148bcede257SMatthew G. Knepley Level: intermediate 149bcede257SMatthew G. Knepley 150bcede257SMatthew G. Knepley .seealso: PetscQuadratureSetOrder(), PetscQuadratureGetData(), PetscQuadratureSetData() 151bcede257SMatthew G. Knepley @*/ 152bcede257SMatthew G. Knepley PetscErrorCode PetscQuadratureGetOrder(PetscQuadrature q, PetscInt *order) 153bcede257SMatthew G. Knepley { 154bcede257SMatthew G. Knepley PetscFunctionBegin; 1552cd22861SMatthew G. Knepley PetscValidHeaderSpecific(q, PETSCQUADRATURE_CLASSID, 1); 156bcede257SMatthew G. Knepley PetscValidPointer(order, 2); 157bcede257SMatthew G. Knepley *order = q->order; 158bcede257SMatthew G. Knepley PetscFunctionReturn(0); 159bcede257SMatthew G. Knepley } 160bcede257SMatthew G. Knepley 161bcede257SMatthew G. Knepley /*@ 162a6b92713SMatthew G. Knepley PetscQuadratureSetOrder - Return the order of the method 163bcede257SMatthew G. Knepley 164bcede257SMatthew G. Knepley Not collective 165bcede257SMatthew G. Knepley 166bcede257SMatthew G. Knepley Input Parameters: 167bcede257SMatthew G. Knepley + q - The PetscQuadrature object 168bcede257SMatthew G. Knepley - order - The order of the quadrature, i.e. the highest degree polynomial that is exactly integrated 169bcede257SMatthew G. Knepley 170bcede257SMatthew G. Knepley Level: intermediate 171bcede257SMatthew G. Knepley 172bcede257SMatthew G. Knepley .seealso: PetscQuadratureGetOrder(), PetscQuadratureGetData(), PetscQuadratureSetData() 173bcede257SMatthew G. Knepley @*/ 174bcede257SMatthew G. Knepley PetscErrorCode PetscQuadratureSetOrder(PetscQuadrature q, PetscInt order) 175bcede257SMatthew G. Knepley { 176bcede257SMatthew G. Knepley PetscFunctionBegin; 1772cd22861SMatthew G. Knepley PetscValidHeaderSpecific(q, PETSCQUADRATURE_CLASSID, 1); 178bcede257SMatthew G. Knepley q->order = order; 179bcede257SMatthew G. Knepley PetscFunctionReturn(0); 180bcede257SMatthew G. Knepley } 181bcede257SMatthew G. Knepley 182a6b92713SMatthew G. Knepley /*@ 183a6b92713SMatthew G. Knepley PetscQuadratureGetNumComponents - Return the number of components for functions to be integrated 184a6b92713SMatthew G. Knepley 185a6b92713SMatthew G. Knepley Not collective 186a6b92713SMatthew G. Knepley 187a6b92713SMatthew G. Knepley Input Parameter: 188a6b92713SMatthew G. Knepley . q - The PetscQuadrature object 189a6b92713SMatthew G. Knepley 190a6b92713SMatthew G. Knepley Output Parameter: 191a6b92713SMatthew G. Knepley . Nc - The number of components 192a6b92713SMatthew G. Knepley 193a6b92713SMatthew G. Knepley Note: We are performing an integral int f(x) . w(x) dx, where both f and w (the weight) have Nc components. 194a6b92713SMatthew G. Knepley 195a6b92713SMatthew G. Knepley Level: intermediate 196a6b92713SMatthew G. Knepley 197a6b92713SMatthew G. Knepley .seealso: PetscQuadratureSetNumComponents(), PetscQuadratureGetData(), PetscQuadratureSetData() 198a6b92713SMatthew G. Knepley @*/ 199a6b92713SMatthew G. Knepley PetscErrorCode PetscQuadratureGetNumComponents(PetscQuadrature q, PetscInt *Nc) 200a6b92713SMatthew G. Knepley { 201a6b92713SMatthew G. Knepley PetscFunctionBegin; 2022cd22861SMatthew G. Knepley PetscValidHeaderSpecific(q, PETSCQUADRATURE_CLASSID, 1); 203a6b92713SMatthew G. Knepley PetscValidPointer(Nc, 2); 204a6b92713SMatthew G. Knepley *Nc = q->Nc; 205a6b92713SMatthew G. Knepley PetscFunctionReturn(0); 206a6b92713SMatthew G. Knepley } 207a6b92713SMatthew G. Knepley 208a6b92713SMatthew G. Knepley /*@ 209a6b92713SMatthew G. Knepley PetscQuadratureSetNumComponents - Return the number of components for functions to be integrated 210a6b92713SMatthew G. Knepley 211a6b92713SMatthew G. Knepley Not collective 212a6b92713SMatthew G. Knepley 213a6b92713SMatthew G. Knepley Input Parameters: 214a6b92713SMatthew G. Knepley + q - The PetscQuadrature object 215a6b92713SMatthew G. Knepley - Nc - The number of components 216a6b92713SMatthew G. Knepley 217a6b92713SMatthew G. Knepley Note: We are performing an integral int f(x) . w(x) dx, where both f and w (the weight) have Nc components. 218a6b92713SMatthew G. Knepley 219a6b92713SMatthew G. Knepley Level: intermediate 220a6b92713SMatthew G. Knepley 221a6b92713SMatthew G. Knepley .seealso: PetscQuadratureGetNumComponents(), PetscQuadratureGetData(), PetscQuadratureSetData() 222a6b92713SMatthew G. Knepley @*/ 223a6b92713SMatthew G. Knepley PetscErrorCode PetscQuadratureSetNumComponents(PetscQuadrature q, PetscInt Nc) 224a6b92713SMatthew G. Knepley { 225a6b92713SMatthew G. Knepley PetscFunctionBegin; 2262cd22861SMatthew G. Knepley PetscValidHeaderSpecific(q, PETSCQUADRATURE_CLASSID, 1); 227a6b92713SMatthew G. Knepley q->Nc = Nc; 228a6b92713SMatthew G. Knepley PetscFunctionReturn(0); 229a6b92713SMatthew G. Knepley } 230a6b92713SMatthew G. Knepley 23140d8ff71SMatthew G. Knepley /*@C 23240d8ff71SMatthew G. Knepley PetscQuadratureGetData - Returns the data defining the quadrature 23340d8ff71SMatthew G. Knepley 23440d8ff71SMatthew G. Knepley Not collective 23540d8ff71SMatthew G. Knepley 23640d8ff71SMatthew G. Knepley Input Parameter: 23740d8ff71SMatthew G. Knepley . q - The PetscQuadrature object 23840d8ff71SMatthew G. Knepley 23940d8ff71SMatthew G. Knepley Output Parameters: 24040d8ff71SMatthew G. Knepley + dim - The spatial dimension 241805e7170SToby Isaac . Nc - The number of components 24240d8ff71SMatthew G. Knepley . npoints - The number of quadrature points 24340d8ff71SMatthew G. Knepley . points - The coordinates of each quadrature point 24440d8ff71SMatthew G. Knepley - weights - The weight of each quadrature point 24540d8ff71SMatthew G. Knepley 24640d8ff71SMatthew G. Knepley Level: intermediate 24740d8ff71SMatthew G. Knepley 24895452b02SPatrick Sanan Fortran Notes: 24995452b02SPatrick Sanan From Fortran you must call PetscQuadratureRestoreData() when you are done with the data 2501fd49c25SBarry Smith 25140d8ff71SMatthew G. Knepley .seealso: PetscQuadratureCreate(), PetscQuadratureSetData() 25240d8ff71SMatthew G. Knepley @*/ 253a6b92713SMatthew G. Knepley PetscErrorCode PetscQuadratureGetData(PetscQuadrature q, PetscInt *dim, PetscInt *Nc, PetscInt *npoints, const PetscReal *points[], const PetscReal *weights[]) 25421454ff5SMatthew G. Knepley { 25521454ff5SMatthew G. Knepley PetscFunctionBegin; 2562cd22861SMatthew G. Knepley PetscValidHeaderSpecific(q, PETSCQUADRATURE_CLASSID, 1); 25721454ff5SMatthew G. Knepley if (dim) { 25821454ff5SMatthew G. Knepley PetscValidPointer(dim, 2); 25921454ff5SMatthew G. Knepley *dim = q->dim; 26021454ff5SMatthew G. Knepley } 261a6b92713SMatthew G. Knepley if (Nc) { 262a6b92713SMatthew G. Knepley PetscValidPointer(Nc, 3); 263a6b92713SMatthew G. Knepley *Nc = q->Nc; 264a6b92713SMatthew G. Knepley } 26521454ff5SMatthew G. Knepley if (npoints) { 266a6b92713SMatthew G. Knepley PetscValidPointer(npoints, 4); 26721454ff5SMatthew G. Knepley *npoints = q->numPoints; 26821454ff5SMatthew G. Knepley } 26921454ff5SMatthew G. Knepley if (points) { 270a6b92713SMatthew G. Knepley PetscValidPointer(points, 5); 27121454ff5SMatthew G. Knepley *points = q->points; 27221454ff5SMatthew G. Knepley } 27321454ff5SMatthew G. Knepley if (weights) { 274a6b92713SMatthew G. Knepley PetscValidPointer(weights, 6); 27521454ff5SMatthew G. Knepley *weights = q->weights; 27621454ff5SMatthew G. Knepley } 27721454ff5SMatthew G. Knepley PetscFunctionReturn(0); 27821454ff5SMatthew G. Knepley } 27921454ff5SMatthew G. Knepley 280907761f8SToby Isaac static PetscErrorCode PetscDTJacobianInverse_Internal(PetscInt m, PetscInt n, const PetscReal J[], PetscReal Jinv[]) 281907761f8SToby Isaac { 282907761f8SToby Isaac PetscScalar *Js, *Jinvs; 283907761f8SToby Isaac PetscInt i, j, k; 284907761f8SToby Isaac PetscBLASInt bm, bn, info; 285907761f8SToby Isaac PetscErrorCode ierr; 286907761f8SToby Isaac 287907761f8SToby Isaac PetscFunctionBegin; 288d4afb720SToby Isaac if (!m || !n) PetscFunctionReturn(0); 289907761f8SToby Isaac ierr = PetscBLASIntCast(m, &bm);CHKERRQ(ierr); 290907761f8SToby Isaac ierr = PetscBLASIntCast(n, &bn);CHKERRQ(ierr); 291907761f8SToby Isaac #if defined(PETSC_USE_COMPLEX) 292907761f8SToby Isaac ierr = PetscMalloc2(m*n, &Js, m*n, &Jinvs);CHKERRQ(ierr); 29328222859SToby Isaac for (i = 0; i < m*n; i++) Js[i] = J[i]; 294907761f8SToby Isaac #else 295907761f8SToby Isaac Js = (PetscReal *) J; 296907761f8SToby Isaac Jinvs = Jinv; 297907761f8SToby Isaac #endif 298907761f8SToby Isaac if (m == n) { 299907761f8SToby Isaac PetscBLASInt *pivots; 300907761f8SToby Isaac PetscScalar *W; 301907761f8SToby Isaac 302907761f8SToby Isaac ierr = PetscMalloc2(m, &pivots, m, &W);CHKERRQ(ierr); 303907761f8SToby Isaac 304907761f8SToby Isaac ierr = PetscArraycpy(Jinvs, Js, m * m);CHKERRQ(ierr); 305907761f8SToby Isaac PetscStackCallBLAS("LAPACKgetrf", LAPACKgetrf_(&bm, &bm, Jinvs, &bm, pivots, &info)); 306907761f8SToby Isaac if (info) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_LIB,"Error returned from LAPACKgetrf %D",(PetscInt)info); 307907761f8SToby Isaac PetscStackCallBLAS("LAPACKgetri", LAPACKgetri_(&bm, Jinvs, &bm, pivots, W, &bm, &info)); 308907761f8SToby Isaac if (info) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_LIB,"Error returned from LAPACKgetri %D",(PetscInt)info); 309907761f8SToby Isaac ierr = PetscFree2(pivots, W);CHKERRQ(ierr); 310907761f8SToby Isaac } else if (m < n) { 311907761f8SToby Isaac PetscScalar *JJT; 312907761f8SToby Isaac PetscBLASInt *pivots; 313907761f8SToby Isaac PetscScalar *W; 314907761f8SToby Isaac 315907761f8SToby Isaac ierr = PetscMalloc1(m*m, &JJT);CHKERRQ(ierr); 316907761f8SToby Isaac ierr = PetscMalloc2(m, &pivots, m, &W);CHKERRQ(ierr); 317907761f8SToby Isaac for (i = 0; i < m; i++) { 318907761f8SToby Isaac for (j = 0; j < m; j++) { 319907761f8SToby Isaac PetscScalar val = 0.; 320907761f8SToby Isaac 321907761f8SToby Isaac for (k = 0; k < n; k++) val += Js[i * n + k] * Js[j * n + k]; 322907761f8SToby Isaac JJT[i * m + j] = val; 323907761f8SToby Isaac } 324907761f8SToby Isaac } 325907761f8SToby Isaac 326907761f8SToby Isaac PetscStackCallBLAS("LAPACKgetrf", LAPACKgetrf_(&bm, &bm, JJT, &bm, pivots, &info)); 327907761f8SToby Isaac if (info) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_LIB,"Error returned from LAPACKgetrf %D",(PetscInt)info); 328907761f8SToby Isaac PetscStackCallBLAS("LAPACKgetri", LAPACKgetri_(&bm, JJT, &bm, pivots, W, &bm, &info)); 329907761f8SToby Isaac if (info) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_LIB,"Error returned from LAPACKgetri %D",(PetscInt)info); 330907761f8SToby Isaac for (i = 0; i < n; i++) { 331907761f8SToby Isaac for (j = 0; j < m; j++) { 332907761f8SToby Isaac PetscScalar val = 0.; 333907761f8SToby Isaac 334907761f8SToby Isaac for (k = 0; k < m; k++) val += Js[k * n + i] * JJT[k * m + j]; 335907761f8SToby Isaac Jinvs[i * m + j] = val; 336907761f8SToby Isaac } 337907761f8SToby Isaac } 338907761f8SToby Isaac ierr = PetscFree2(pivots, W);CHKERRQ(ierr); 339907761f8SToby Isaac ierr = PetscFree(JJT);CHKERRQ(ierr); 340907761f8SToby Isaac } else { 341907761f8SToby Isaac PetscScalar *JTJ; 342907761f8SToby Isaac PetscBLASInt *pivots; 343907761f8SToby Isaac PetscScalar *W; 344907761f8SToby Isaac 345907761f8SToby Isaac ierr = PetscMalloc1(n*n, &JTJ);CHKERRQ(ierr); 346907761f8SToby Isaac ierr = PetscMalloc2(n, &pivots, n, &W);CHKERRQ(ierr); 347907761f8SToby Isaac for (i = 0; i < n; i++) { 348907761f8SToby Isaac for (j = 0; j < n; j++) { 349907761f8SToby Isaac PetscScalar val = 0.; 350907761f8SToby Isaac 351907761f8SToby Isaac for (k = 0; k < m; k++) val += Js[k * n + i] * Js[k * n + j]; 352907761f8SToby Isaac JTJ[i * n + j] = val; 353907761f8SToby Isaac } 354907761f8SToby Isaac } 355907761f8SToby Isaac 356d4afb720SToby Isaac PetscStackCallBLAS("LAPACKgetrf", LAPACKgetrf_(&bn, &bn, JTJ, &bn, pivots, &info)); 357907761f8SToby Isaac if (info) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_LIB,"Error returned from LAPACKgetrf %D",(PetscInt)info); 358907761f8SToby Isaac PetscStackCallBLAS("LAPACKgetri", LAPACKgetri_(&bn, JTJ, &bn, pivots, W, &bn, &info)); 359907761f8SToby Isaac if (info) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_LIB,"Error returned from LAPACKgetri %D",(PetscInt)info); 360907761f8SToby Isaac for (i = 0; i < n; i++) { 361907761f8SToby Isaac for (j = 0; j < m; j++) { 362907761f8SToby Isaac PetscScalar val = 0.; 363907761f8SToby Isaac 364907761f8SToby Isaac for (k = 0; k < n; k++) val += JTJ[i * n + k] * Js[j * n + k]; 365907761f8SToby Isaac Jinvs[i * m + j] = val; 366907761f8SToby Isaac } 367907761f8SToby Isaac } 368907761f8SToby Isaac ierr = PetscFree2(pivots, W);CHKERRQ(ierr); 369907761f8SToby Isaac ierr = PetscFree(JTJ);CHKERRQ(ierr); 370907761f8SToby Isaac } 371907761f8SToby Isaac #if defined(PETSC_USE_COMPLEX) 37228222859SToby Isaac for (i = 0; i < m*n; i++) Jinv[i] = PetscRealPart(Jinvs[i]); 373907761f8SToby Isaac ierr = PetscFree2(Js, Jinvs);CHKERRQ(ierr); 374907761f8SToby Isaac #endif 375907761f8SToby Isaac PetscFunctionReturn(0); 376907761f8SToby Isaac } 377907761f8SToby Isaac 378907761f8SToby Isaac /*@ 379907761f8SToby Isaac PetscQuadraturePushForward - Push forward a quadrature functional under an affine transformation. 380907761f8SToby Isaac 381907761f8SToby Isaac Collecive on PetscQuadrature 382907761f8SToby Isaac 3834165533cSJose E. Roman Input Parameters: 384907761f8SToby Isaac + q - the quadrature functional 385907761f8SToby Isaac . imageDim - the dimension of the image of the transformation 386907761f8SToby Isaac . origin - a point in the original space 387907761f8SToby Isaac . originImage - the image of the origin under the transformation 388907761f8SToby Isaac . J - the Jacobian of the image: an [imageDim x dim] matrix in row major order 38928222859SToby Isaac - formDegree - transform the quadrature weights as k-forms of this form degree (if the number of components is a multiple of (dim choose formDegree), it is assumed that they represent multiple k-forms) [see PetscDTAltVPullback() for interpretation of formDegree] 390907761f8SToby Isaac 3914165533cSJose E. Roman Output Parameters: 392907761f8SToby Isaac . Jinvstarq - a quadrature rule where each point is the image of a point in the original quadrature rule, and where the k-form weights have been pulled-back by the pseudoinverse of J to the k-form weights in the image space. 393907761f8SToby Isaac 394907761f8SToby Isaac Note: the new quadrature rule will have a different number of components if spaces have different dimensions. For example, pushing a 2-form forward from a two dimensional space to a three dimensional space changes the number of components from 1 to 3. 395907761f8SToby Isaac 3966c877ef6SSatish Balay Level: intermediate 3976c877ef6SSatish Balay 398907761f8SToby Isaac .seealso: PetscDTAltVPullback(), PetscDTAltVPullbackMatrix() 399907761f8SToby Isaac @*/ 40028222859SToby Isaac PetscErrorCode PetscQuadraturePushForward(PetscQuadrature q, PetscInt imageDim, const PetscReal origin[], const PetscReal originImage[], const PetscReal J[], PetscInt formDegree, PetscQuadrature *Jinvstarq) 401907761f8SToby Isaac { 402907761f8SToby Isaac PetscInt dim, Nc, imageNc, formSize, Ncopies, imageFormSize, Npoints, pt, i, j, c; 403907761f8SToby Isaac const PetscReal *points; 404907761f8SToby Isaac const PetscReal *weights; 405907761f8SToby Isaac PetscReal *imagePoints, *imageWeights; 406907761f8SToby Isaac PetscReal *Jinv; 407907761f8SToby Isaac PetscReal *Jinvstar; 408907761f8SToby Isaac PetscErrorCode ierr; 409907761f8SToby Isaac 410907761f8SToby Isaac PetscFunctionBegin; 411d4afb720SToby Isaac PetscValidHeaderSpecific(q, PETSCQUADRATURE_CLASSID, 1); 41228222859SToby Isaac if (imageDim < PetscAbsInt(formDegree)) SETERRQ2(PetscObjectComm((PetscObject)q), PETSC_ERR_ARG_INCOMP, "Cannot represent a %D-form in %D dimensions", PetscAbsInt(formDegree), imageDim); 413907761f8SToby Isaac ierr = PetscQuadratureGetData(q, &dim, &Nc, &Npoints, &points, &weights);CHKERRQ(ierr); 41428222859SToby Isaac ierr = PetscDTBinomialInt(dim, PetscAbsInt(formDegree), &formSize);CHKERRQ(ierr); 415907761f8SToby Isaac if (Nc % formSize) SETERRQ2(PetscObjectComm((PetscObject)q), PETSC_ERR_ARG_INCOMP, "Number of components %D is not a multiple of formSize %D\n", Nc, formSize); 416907761f8SToby Isaac Ncopies = Nc / formSize; 41728222859SToby Isaac ierr = PetscDTBinomialInt(imageDim, PetscAbsInt(formDegree), &imageFormSize);CHKERRQ(ierr); 418907761f8SToby Isaac imageNc = Ncopies * imageFormSize; 419907761f8SToby Isaac ierr = PetscMalloc1(Npoints * imageDim, &imagePoints);CHKERRQ(ierr); 420907761f8SToby Isaac ierr = PetscMalloc1(Npoints * imageNc, &imageWeights);CHKERRQ(ierr); 421907761f8SToby Isaac ierr = PetscMalloc2(imageDim * dim, &Jinv, formSize * imageFormSize, &Jinvstar);CHKERRQ(ierr); 422d4afb720SToby Isaac ierr = PetscDTJacobianInverse_Internal(imageDim, dim, J, Jinv);CHKERRQ(ierr); 42328222859SToby Isaac ierr = PetscDTAltVPullbackMatrix(imageDim, dim, Jinv, formDegree, Jinvstar);CHKERRQ(ierr); 424907761f8SToby Isaac for (pt = 0; pt < Npoints; pt++) { 425907761f8SToby Isaac const PetscReal *point = &points[pt * dim]; 426907761f8SToby Isaac PetscReal *imagePoint = &imagePoints[pt * imageDim]; 427907761f8SToby Isaac 428907761f8SToby Isaac for (i = 0; i < imageDim; i++) { 429907761f8SToby Isaac PetscReal val = originImage[i]; 430907761f8SToby Isaac 431907761f8SToby Isaac for (j = 0; j < dim; j++) val += J[i * dim + j] * (point[j] - origin[j]); 432907761f8SToby Isaac imagePoint[i] = val; 433907761f8SToby Isaac } 434907761f8SToby Isaac for (c = 0; c < Ncopies; c++) { 435907761f8SToby Isaac const PetscReal *form = &weights[pt * Nc + c * formSize]; 436907761f8SToby Isaac PetscReal *imageForm = &imageWeights[pt * imageNc + c * imageFormSize]; 437907761f8SToby Isaac 438907761f8SToby Isaac for (i = 0; i < imageFormSize; i++) { 439907761f8SToby Isaac PetscReal val = 0.; 440907761f8SToby Isaac 441907761f8SToby Isaac for (j = 0; j < formSize; j++) val += Jinvstar[i * formSize + j] * form[j]; 442907761f8SToby Isaac imageForm[i] = val; 443907761f8SToby Isaac } 444907761f8SToby Isaac } 445907761f8SToby Isaac } 446907761f8SToby Isaac ierr = PetscQuadratureCreate(PetscObjectComm((PetscObject)q), Jinvstarq);CHKERRQ(ierr); 447907761f8SToby Isaac ierr = PetscQuadratureSetData(*Jinvstarq, imageDim, imageNc, Npoints, imagePoints, imageWeights);CHKERRQ(ierr); 448907761f8SToby Isaac ierr = PetscFree2(Jinv, Jinvstar);CHKERRQ(ierr); 449907761f8SToby Isaac PetscFunctionReturn(0); 450907761f8SToby Isaac } 451907761f8SToby Isaac 45240d8ff71SMatthew G. Knepley /*@C 45340d8ff71SMatthew G. Knepley PetscQuadratureSetData - Sets the data defining the quadrature 45440d8ff71SMatthew G. Knepley 45540d8ff71SMatthew G. Knepley Not collective 45640d8ff71SMatthew G. Knepley 45740d8ff71SMatthew G. Knepley Input Parameters: 45840d8ff71SMatthew G. Knepley + q - The PetscQuadrature object 45940d8ff71SMatthew G. Knepley . dim - The spatial dimension 460e2b35d93SBarry Smith . Nc - The number of components 46140d8ff71SMatthew G. Knepley . npoints - The number of quadrature points 46240d8ff71SMatthew G. Knepley . points - The coordinates of each quadrature point 46340d8ff71SMatthew G. Knepley - weights - The weight of each quadrature point 46440d8ff71SMatthew G. Knepley 465c99e0549SMatthew G. Knepley Note: This routine owns the references to points and weights, so they must be allocated using PetscMalloc() and the user should not free them. 466f2fd9e53SMatthew G. Knepley 46740d8ff71SMatthew G. Knepley Level: intermediate 46840d8ff71SMatthew G. Knepley 46940d8ff71SMatthew G. Knepley .seealso: PetscQuadratureCreate(), PetscQuadratureGetData() 47040d8ff71SMatthew G. Knepley @*/ 471a6b92713SMatthew G. Knepley PetscErrorCode PetscQuadratureSetData(PetscQuadrature q, PetscInt dim, PetscInt Nc, PetscInt npoints, const PetscReal points[], const PetscReal weights[]) 47221454ff5SMatthew G. Knepley { 47321454ff5SMatthew G. Knepley PetscFunctionBegin; 4742cd22861SMatthew G. Knepley PetscValidHeaderSpecific(q, PETSCQUADRATURE_CLASSID, 1); 47521454ff5SMatthew G. Knepley if (dim >= 0) q->dim = dim; 476a6b92713SMatthew G. Knepley if (Nc >= 0) q->Nc = Nc; 47721454ff5SMatthew G. Knepley if (npoints >= 0) q->numPoints = npoints; 47821454ff5SMatthew G. Knepley if (points) { 479064a246eSJacob Faibussowitsch PetscValidPointer(points, 5); 48021454ff5SMatthew G. Knepley q->points = points; 48121454ff5SMatthew G. Knepley } 48221454ff5SMatthew G. Knepley if (weights) { 483064a246eSJacob Faibussowitsch PetscValidPointer(weights, 6); 48421454ff5SMatthew G. Knepley q->weights = weights; 48521454ff5SMatthew G. Knepley } 486f9fd7fdbSMatthew G. Knepley PetscFunctionReturn(0); 487f9fd7fdbSMatthew G. Knepley } 488f9fd7fdbSMatthew G. Knepley 489d9bac1caSLisandro Dalcin static PetscErrorCode PetscQuadratureView_Ascii(PetscQuadrature quad, PetscViewer v) 490d9bac1caSLisandro Dalcin { 491d9bac1caSLisandro Dalcin PetscInt q, d, c; 492d9bac1caSLisandro Dalcin PetscViewerFormat format; 493d9bac1caSLisandro Dalcin PetscErrorCode ierr; 494d9bac1caSLisandro Dalcin 495d9bac1caSLisandro Dalcin PetscFunctionBegin; 496c74b4a09SMatthew G. Knepley if (quad->Nc > 1) {ierr = PetscViewerASCIIPrintf(v, "Quadrature of order %D on %D points (dim %D) with %D components\n", quad->order, quad->numPoints, quad->dim, quad->Nc);CHKERRQ(ierr);} 497c74b4a09SMatthew G. Knepley else {ierr = PetscViewerASCIIPrintf(v, "Quadrature of order %D on %D points (dim %D)\n", quad->order, quad->numPoints, quad->dim);CHKERRQ(ierr);} 498d9bac1caSLisandro Dalcin ierr = PetscViewerGetFormat(v, &format);CHKERRQ(ierr); 499d9bac1caSLisandro Dalcin if (format != PETSC_VIEWER_ASCII_INFO_DETAIL) PetscFunctionReturn(0); 500d9bac1caSLisandro Dalcin for (q = 0; q < quad->numPoints; ++q) { 501c74b4a09SMatthew G. Knepley ierr = PetscViewerASCIIPrintf(v, "p%D (", q);CHKERRQ(ierr); 502d9bac1caSLisandro Dalcin ierr = PetscViewerASCIIUseTabs(v, PETSC_FALSE);CHKERRQ(ierr); 503d9bac1caSLisandro Dalcin for (d = 0; d < quad->dim; ++d) { 504d9bac1caSLisandro Dalcin if (d) {ierr = PetscViewerASCIIPrintf(v, ", ");CHKERRQ(ierr);} 505d9bac1caSLisandro Dalcin ierr = PetscViewerASCIIPrintf(v, "%+g", (double)quad->points[q*quad->dim+d]);CHKERRQ(ierr); 506d9bac1caSLisandro Dalcin } 507d9bac1caSLisandro Dalcin ierr = PetscViewerASCIIPrintf(v, ") ");CHKERRQ(ierr); 508c74b4a09SMatthew G. Knepley if (quad->Nc > 1) {ierr = PetscViewerASCIIPrintf(v, "w%D (", q);CHKERRQ(ierr);} 509d9bac1caSLisandro Dalcin for (c = 0; c < quad->Nc; ++c) { 510d9bac1caSLisandro Dalcin if (c) {ierr = PetscViewerASCIIPrintf(v, ", ");CHKERRQ(ierr);} 511c74b4a09SMatthew G. Knepley ierr = PetscViewerASCIIPrintf(v, "%+g", (double)quad->weights[q*quad->Nc+c]);CHKERRQ(ierr); 512d9bac1caSLisandro Dalcin } 513d9bac1caSLisandro Dalcin if (quad->Nc > 1) {ierr = PetscViewerASCIIPrintf(v, ")");CHKERRQ(ierr);} 514d9bac1caSLisandro Dalcin ierr = PetscViewerASCIIPrintf(v, "\n");CHKERRQ(ierr); 515d9bac1caSLisandro Dalcin ierr = PetscViewerASCIIUseTabs(v, PETSC_TRUE);CHKERRQ(ierr); 516d9bac1caSLisandro Dalcin } 517d9bac1caSLisandro Dalcin PetscFunctionReturn(0); 518d9bac1caSLisandro Dalcin } 519d9bac1caSLisandro Dalcin 52040d8ff71SMatthew G. Knepley /*@C 52140d8ff71SMatthew G. Knepley PetscQuadratureView - Views a PetscQuadrature object 52240d8ff71SMatthew G. Knepley 523d083f849SBarry Smith Collective on quad 52440d8ff71SMatthew G. Knepley 52540d8ff71SMatthew G. Knepley Input Parameters: 526d9bac1caSLisandro Dalcin + quad - The PetscQuadrature object 52740d8ff71SMatthew G. Knepley - viewer - The PetscViewer object 52840d8ff71SMatthew G. Knepley 52940d8ff71SMatthew G. Knepley Level: beginner 53040d8ff71SMatthew G. Knepley 53140d8ff71SMatthew G. Knepley .seealso: PetscQuadratureCreate(), PetscQuadratureGetData() 53240d8ff71SMatthew G. Knepley @*/ 533f9fd7fdbSMatthew G. Knepley PetscErrorCode PetscQuadratureView(PetscQuadrature quad, PetscViewer viewer) 534f9fd7fdbSMatthew G. Knepley { 535d9bac1caSLisandro Dalcin PetscBool iascii; 536f9fd7fdbSMatthew G. Knepley PetscErrorCode ierr; 537f9fd7fdbSMatthew G. Knepley 538f9fd7fdbSMatthew G. Knepley PetscFunctionBegin; 539d9bac1caSLisandro Dalcin PetscValidHeader(quad, 1); 540d9bac1caSLisandro Dalcin if (viewer) PetscValidHeaderSpecific(viewer, PETSC_VIEWER_CLASSID, 2); 541d9bac1caSLisandro Dalcin if (!viewer) {ierr = PetscViewerASCIIGetStdout(PetscObjectComm((PetscObject) quad), &viewer);CHKERRQ(ierr);} 542d9bac1caSLisandro Dalcin ierr = PetscObjectTypeCompare((PetscObject) viewer, PETSCVIEWERASCII, &iascii);CHKERRQ(ierr); 543d9bac1caSLisandro Dalcin ierr = PetscViewerASCIIPushTab(viewer);CHKERRQ(ierr); 544d9bac1caSLisandro Dalcin if (iascii) {ierr = PetscQuadratureView_Ascii(quad, viewer);CHKERRQ(ierr);} 545d9bac1caSLisandro Dalcin ierr = PetscViewerASCIIPopTab(viewer);CHKERRQ(ierr); 546bfa639d9SMatthew G. Knepley PetscFunctionReturn(0); 547bfa639d9SMatthew G. Knepley } 548bfa639d9SMatthew G. Knepley 54989710940SMatthew G. Knepley /*@C 55089710940SMatthew G. Knepley PetscQuadratureExpandComposite - Return a quadrature over the composite element, which has the original quadrature in each subelement 55189710940SMatthew G. Knepley 55289710940SMatthew G. Knepley Not collective 55389710940SMatthew G. Knepley 554d8d19677SJose E. Roman Input Parameters: 55589710940SMatthew G. Knepley + q - The original PetscQuadrature 55689710940SMatthew G. Knepley . numSubelements - The number of subelements the original element is divided into 55789710940SMatthew G. Knepley . v0 - An array of the initial points for each subelement 55889710940SMatthew G. Knepley - jac - An array of the Jacobian mappings from the reference to each subelement 55989710940SMatthew G. Knepley 56089710940SMatthew G. Knepley Output Parameters: 56189710940SMatthew G. Knepley . dim - The dimension 56289710940SMatthew G. Knepley 56389710940SMatthew G. Knepley Note: Together v0 and jac define an affine mapping from the original reference element to each subelement 56489710940SMatthew G. Knepley 565f5f57ec0SBarry Smith Not available from Fortran 566f5f57ec0SBarry Smith 56789710940SMatthew G. Knepley Level: intermediate 56889710940SMatthew G. Knepley 56989710940SMatthew G. Knepley .seealso: PetscFECreate(), PetscSpaceGetDimension(), PetscDualSpaceGetDimension() 57089710940SMatthew G. Knepley @*/ 57189710940SMatthew G. Knepley PetscErrorCode PetscQuadratureExpandComposite(PetscQuadrature q, PetscInt numSubelements, const PetscReal v0[], const PetscReal jac[], PetscQuadrature *qref) 57289710940SMatthew G. Knepley { 57389710940SMatthew G. Knepley const PetscReal *points, *weights; 57489710940SMatthew G. Knepley PetscReal *pointsRef, *weightsRef; 575a6b92713SMatthew G. Knepley PetscInt dim, Nc, order, npoints, npointsRef, c, p, cp, d, e; 57689710940SMatthew G. Knepley PetscErrorCode ierr; 57789710940SMatthew G. Knepley 57889710940SMatthew G. Knepley PetscFunctionBegin; 5792cd22861SMatthew G. Knepley PetscValidHeaderSpecific(q, PETSCQUADRATURE_CLASSID, 1); 58089710940SMatthew G. Knepley PetscValidPointer(v0, 3); 58189710940SMatthew G. Knepley PetscValidPointer(jac, 4); 58289710940SMatthew G. Knepley PetscValidPointer(qref, 5); 58389710940SMatthew G. Knepley ierr = PetscQuadratureCreate(PETSC_COMM_SELF, qref);CHKERRQ(ierr); 58489710940SMatthew G. Knepley ierr = PetscQuadratureGetOrder(q, &order);CHKERRQ(ierr); 585a6b92713SMatthew G. Knepley ierr = PetscQuadratureGetData(q, &dim, &Nc, &npoints, &points, &weights);CHKERRQ(ierr); 58689710940SMatthew G. Knepley npointsRef = npoints*numSubelements; 58789710940SMatthew G. Knepley ierr = PetscMalloc1(npointsRef*dim,&pointsRef);CHKERRQ(ierr); 588a6b92713SMatthew G. Knepley ierr = PetscMalloc1(npointsRef*Nc, &weightsRef);CHKERRQ(ierr); 58989710940SMatthew G. Knepley for (c = 0; c < numSubelements; ++c) { 59089710940SMatthew G. Knepley for (p = 0; p < npoints; ++p) { 59189710940SMatthew G. Knepley for (d = 0; d < dim; ++d) { 59289710940SMatthew G. Knepley pointsRef[(c*npoints + p)*dim+d] = v0[c*dim+d]; 59389710940SMatthew G. Knepley for (e = 0; e < dim; ++e) { 59489710940SMatthew G. Knepley pointsRef[(c*npoints + p)*dim+d] += jac[(c*dim + d)*dim+e]*(points[p*dim+e] + 1.0); 59589710940SMatthew G. Knepley } 59689710940SMatthew G. Knepley } 59789710940SMatthew G. Knepley /* Could also use detJ here */ 598a6b92713SMatthew G. Knepley for (cp = 0; cp < Nc; ++cp) weightsRef[(c*npoints+p)*Nc+cp] = weights[p*Nc+cp]/numSubelements; 59989710940SMatthew G. Knepley } 60089710940SMatthew G. Knepley } 60189710940SMatthew G. Knepley ierr = PetscQuadratureSetOrder(*qref, order);CHKERRQ(ierr); 602a6b92713SMatthew G. Knepley ierr = PetscQuadratureSetData(*qref, dim, Nc, npointsRef, pointsRef, weightsRef);CHKERRQ(ierr); 60389710940SMatthew G. Knepley PetscFunctionReturn(0); 60489710940SMatthew G. Knepley } 60589710940SMatthew G. Knepley 60694e21283SToby Isaac /* Compute the coefficients for the Jacobi polynomial recurrence, 60794e21283SToby Isaac * 60894e21283SToby Isaac * J^{a,b}_n(x) = (cnm1 + cnm1x * x) * J^{a,b}_{n-1}(x) - cnm2 * J^{a,b}_{n-2}(x). 60994e21283SToby Isaac */ 61094e21283SToby Isaac #define PetscDTJacobiRecurrence_Internal(n,a,b,cnm1,cnm1x,cnm2) \ 61194e21283SToby Isaac do { \ 61294e21283SToby Isaac PetscReal _a = (a); \ 61394e21283SToby Isaac PetscReal _b = (b); \ 61494e21283SToby Isaac PetscReal _n = (n); \ 61594e21283SToby Isaac if (n == 1) { \ 61694e21283SToby Isaac (cnm1) = (_a-_b) * 0.5; \ 61794e21283SToby Isaac (cnm1x) = (_a+_b+2.)*0.5; \ 61894e21283SToby Isaac (cnm2) = 0.; \ 61994e21283SToby Isaac } else { \ 62094e21283SToby Isaac PetscReal _2n = _n+_n; \ 62194e21283SToby Isaac PetscReal _d = (_2n*(_n+_a+_b)*(_2n+_a+_b-2)); \ 62294e21283SToby Isaac PetscReal _n1 = (_2n+_a+_b-1.)*(_a*_a-_b*_b); \ 62394e21283SToby Isaac PetscReal _n1x = (_2n+_a+_b-1.)*(_2n+_a+_b)*(_2n+_a+_b-2); \ 62494e21283SToby Isaac PetscReal _n2 = 2.*((_n+_a-1.)*(_n+_b-1.)*(_2n+_a+_b)); \ 62594e21283SToby Isaac (cnm1) = _n1 / _d; \ 62694e21283SToby Isaac (cnm1x) = _n1x / _d; \ 62794e21283SToby Isaac (cnm2) = _n2 / _d; \ 62894e21283SToby Isaac } \ 62994e21283SToby Isaac } while (0) 63094e21283SToby Isaac 631fbdc3dfeSToby Isaac /*@ 632fbdc3dfeSToby Isaac PetscDTJacobiNorm - Compute the weighted L2 norm of a Jacobi polynomial. 633fbdc3dfeSToby Isaac 634fbdc3dfeSToby Isaac $\| P^{\alpha,\beta}_n \|_{\alpha,\beta}^2 = \int_{-1}^1 (1 + x)^{\alpha} (1 - x)^{\beta} P^{\alpha,\beta}_n (x)^2 dx.$ 635fbdc3dfeSToby Isaac 6364165533cSJose E. Roman Input Parameters: 637fbdc3dfeSToby Isaac - alpha - the left exponent > -1 638fbdc3dfeSToby Isaac . beta - the right exponent > -1 639fbdc3dfeSToby Isaac + n - the polynomial degree 640fbdc3dfeSToby Isaac 6414165533cSJose E. Roman Output Parameter: 642fbdc3dfeSToby Isaac . norm - the weighted L2 norm 643fbdc3dfeSToby Isaac 644fbdc3dfeSToby Isaac Level: beginner 645fbdc3dfeSToby Isaac 646fbdc3dfeSToby Isaac .seealso: PetscDTJacobiEval() 647fbdc3dfeSToby Isaac @*/ 648fbdc3dfeSToby Isaac PetscErrorCode PetscDTJacobiNorm(PetscReal alpha, PetscReal beta, PetscInt n, PetscReal *norm) 649fbdc3dfeSToby Isaac { 650fbdc3dfeSToby Isaac PetscReal twoab1; 651fbdc3dfeSToby Isaac PetscReal gr; 652fbdc3dfeSToby Isaac 653fbdc3dfeSToby Isaac PetscFunctionBegin; 654fbdc3dfeSToby Isaac if (alpha <= -1.) SETERRQ1(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Exponent alpha %g <= -1. invalid\n", (double) alpha); 655fbdc3dfeSToby Isaac if (beta <= -1.) SETERRQ1(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Exponent beta %g <= -1. invalid\n", (double) beta); 656fbdc3dfeSToby Isaac if (n < 0) SETERRQ1(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "n %D < 0 invalid\n", n); 657fbdc3dfeSToby Isaac twoab1 = PetscPowReal(2., alpha + beta + 1.); 658fbdc3dfeSToby Isaac #if defined(PETSC_HAVE_LGAMMA) 659fbdc3dfeSToby Isaac if (!n) { 660fbdc3dfeSToby Isaac gr = PetscExpReal(PetscLGamma(alpha+1.) + PetscLGamma(beta+1.) - PetscLGamma(alpha+beta+2.)); 661fbdc3dfeSToby Isaac } else { 662fbdc3dfeSToby Isaac gr = PetscExpReal(PetscLGamma(n+alpha+1.) + PetscLGamma(n+beta+1.) - (PetscLGamma(n+1.) + PetscLGamma(n+alpha+beta+1.))) / (n+n+alpha+beta+1.); 663fbdc3dfeSToby Isaac } 664fbdc3dfeSToby Isaac #else 665fbdc3dfeSToby Isaac { 666fbdc3dfeSToby Isaac PetscInt alphai = (PetscInt) alpha; 667fbdc3dfeSToby Isaac PetscInt betai = (PetscInt) beta; 668fbdc3dfeSToby Isaac PetscInt i; 669fbdc3dfeSToby Isaac 670fbdc3dfeSToby Isaac gr = n ? (1. / (n+n+alpha+beta+1.)) : 1.; 671fbdc3dfeSToby Isaac if ((PetscReal) alphai == alpha) { 672fbdc3dfeSToby Isaac if (!n) { 673fbdc3dfeSToby Isaac for (i = 0; i < alphai; i++) gr *= (i+1.) / (beta+i+1.); 674fbdc3dfeSToby Isaac gr /= (alpha+beta+1.); 675fbdc3dfeSToby Isaac } else { 676fbdc3dfeSToby Isaac for (i = 0; i < alphai; i++) gr *= (n+i+1.) / (n+beta+i+1.); 677fbdc3dfeSToby Isaac } 678fbdc3dfeSToby Isaac } else if ((PetscReal) betai == beta) { 679fbdc3dfeSToby Isaac if (!n) { 680fbdc3dfeSToby Isaac for (i = 0; i < betai; i++) gr *= (i+1.) / (alpha+i+2.); 681fbdc3dfeSToby Isaac gr /= (alpha+beta+1.); 682fbdc3dfeSToby Isaac } else { 683fbdc3dfeSToby Isaac for (i = 0; i < betai; i++) gr *= (n+i+1.) / (n+alpha+i+1.); 684fbdc3dfeSToby Isaac } 685fbdc3dfeSToby Isaac } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"lgamma() - math routine is unavailable."); 686fbdc3dfeSToby Isaac } 687fbdc3dfeSToby Isaac #endif 688fbdc3dfeSToby Isaac *norm = PetscSqrtReal(twoab1 * gr); 689fbdc3dfeSToby Isaac PetscFunctionReturn(0); 690fbdc3dfeSToby Isaac } 691fbdc3dfeSToby Isaac 69294e21283SToby Isaac static PetscErrorCode PetscDTJacobiEval_Internal(PetscInt npoints, PetscReal a, PetscReal b, PetscInt k, const PetscReal *points, PetscInt ndegree, const PetscInt *degrees, PetscReal *p) 69394e21283SToby Isaac { 69494e21283SToby Isaac PetscReal ak, bk; 69594e21283SToby Isaac PetscReal abk1; 69694e21283SToby Isaac PetscInt i,l,maxdegree; 69794e21283SToby Isaac 69894e21283SToby Isaac PetscFunctionBegin; 69994e21283SToby Isaac maxdegree = degrees[ndegree-1] - k; 70094e21283SToby Isaac ak = a + k; 70194e21283SToby Isaac bk = b + k; 70294e21283SToby Isaac abk1 = a + b + k + 1.; 70394e21283SToby Isaac if (maxdegree < 0) { 70494e21283SToby Isaac for (i = 0; i < npoints; i++) for (l = 0; l < ndegree; l++) p[i*ndegree+l] = 0.; 70594e21283SToby Isaac PetscFunctionReturn(0); 70694e21283SToby Isaac } 70794e21283SToby Isaac for (i=0; i<npoints; i++) { 70894e21283SToby Isaac PetscReal pm1,pm2,x; 70994e21283SToby Isaac PetscReal cnm1, cnm1x, cnm2; 71094e21283SToby Isaac PetscInt j,m; 71194e21283SToby Isaac 71294e21283SToby Isaac x = points[i]; 71394e21283SToby Isaac pm2 = 1.; 71494e21283SToby Isaac PetscDTJacobiRecurrence_Internal(1,ak,bk,cnm1,cnm1x,cnm2); 71594e21283SToby Isaac pm1 = (cnm1 + cnm1x*x); 71694e21283SToby Isaac l = 0; 71794e21283SToby Isaac while (l < ndegree && degrees[l] - k < 0) { 71894e21283SToby Isaac p[l++] = 0.; 71994e21283SToby Isaac } 72094e21283SToby Isaac while (l < ndegree && degrees[l] - k == 0) { 72194e21283SToby Isaac p[l] = pm2; 72294e21283SToby Isaac for (m = 0; m < k; m++) p[l] *= (abk1 + m) * 0.5; 72394e21283SToby Isaac l++; 72494e21283SToby Isaac } 72594e21283SToby Isaac while (l < ndegree && degrees[l] - k == 1) { 72694e21283SToby Isaac p[l] = pm1; 72794e21283SToby Isaac for (m = 0; m < k; m++) p[l] *= (abk1 + 1 + m) * 0.5; 72894e21283SToby Isaac l++; 72994e21283SToby Isaac } 73094e21283SToby Isaac for (j=2; j<=maxdegree; j++) { 73194e21283SToby Isaac PetscReal pp; 73294e21283SToby Isaac 73394e21283SToby Isaac PetscDTJacobiRecurrence_Internal(j,ak,bk,cnm1,cnm1x,cnm2); 73494e21283SToby Isaac pp = (cnm1 + cnm1x*x)*pm1 - cnm2*pm2; 73594e21283SToby Isaac pm2 = pm1; 73694e21283SToby Isaac pm1 = pp; 73794e21283SToby Isaac while (l < ndegree && degrees[l] - k == j) { 73894e21283SToby Isaac p[l] = pp; 73994e21283SToby Isaac for (m = 0; m < k; m++) p[l] *= (abk1 + j + m) * 0.5; 74094e21283SToby Isaac l++; 74194e21283SToby Isaac } 74294e21283SToby Isaac } 74394e21283SToby Isaac p += ndegree; 74494e21283SToby Isaac } 74594e21283SToby Isaac PetscFunctionReturn(0); 74694e21283SToby Isaac } 74794e21283SToby Isaac 74837045ce4SJed Brown /*@ 749fbdc3dfeSToby Isaac PetscDTJacobiEvalJet - Evaluate the jet (function and derivatives) of the Jacobi polynomials basis up to a given degree. The Jacobi polynomials with indices $\alpha$ and $\beta$ are orthogonal with respect to the weighted inner product $\langle f, g \rangle = \int_{-1}^1 (1+x)^{\alpha} (1-x)^{\beta) f(x) g(x) dx$. 750fbdc3dfeSToby Isaac 7514165533cSJose E. Roman Input Parameters: 752fbdc3dfeSToby Isaac + alpha - the left exponent of the weight 753fbdc3dfeSToby Isaac . beta - the right exponetn of the weight 754fbdc3dfeSToby Isaac . npoints - the number of points to evaluate the polynomials at 755fbdc3dfeSToby Isaac . points - [npoints] array of point coordinates 756fbdc3dfeSToby Isaac . degree - the maximm degree polynomial space to evaluate, (degree + 1) will be evaluated total. 757fbdc3dfeSToby Isaac - k - the maximum derivative to evaluate in the jet, (k + 1) will be evaluated total. 758fbdc3dfeSToby Isaac 759fbdc3dfeSToby Isaac Output Argments: 760fbdc3dfeSToby Isaac - p - an array containing the evaluations of the Jacobi polynomials's jets on the points. the size is (degree + 1) x 761fbdc3dfeSToby Isaac (k + 1) x npoints, which also describes the order of the dimensions of this three-dimensional array: the first 762fbdc3dfeSToby Isaac (slowest varying) dimension is polynomial degree; the second dimension is derivative order; the third (fastest 763fbdc3dfeSToby Isaac varying) dimension is the index of the evaluation point. 764fbdc3dfeSToby Isaac 765fbdc3dfeSToby Isaac Level: advanced 766fbdc3dfeSToby Isaac 767fbdc3dfeSToby Isaac .seealso: PetscDTJacobiEval(), PetscDTPKDEvalJet() 768fbdc3dfeSToby Isaac @*/ 769fbdc3dfeSToby Isaac PetscErrorCode PetscDTJacobiEvalJet(PetscReal alpha, PetscReal beta, PetscInt npoints, const PetscReal points[], PetscInt degree, PetscInt k, PetscReal p[]) 770fbdc3dfeSToby Isaac { 771fbdc3dfeSToby Isaac PetscInt i, j, l; 772fbdc3dfeSToby Isaac PetscInt *degrees; 773fbdc3dfeSToby Isaac PetscReal *psingle; 774fbdc3dfeSToby Isaac PetscErrorCode ierr; 775fbdc3dfeSToby Isaac 776fbdc3dfeSToby Isaac PetscFunctionBegin; 777fbdc3dfeSToby Isaac if (degree == 0) { 778fbdc3dfeSToby Isaac PetscInt zero = 0; 779fbdc3dfeSToby Isaac 780fbdc3dfeSToby Isaac for (i = 0; i <= k; i++) { 781fbdc3dfeSToby Isaac ierr = PetscDTJacobiEval_Internal(npoints, alpha, beta, i, points, 1, &zero, &p[i*npoints]);CHKERRQ(ierr); 782fbdc3dfeSToby Isaac } 783fbdc3dfeSToby Isaac PetscFunctionReturn(0); 784fbdc3dfeSToby Isaac } 785fbdc3dfeSToby Isaac ierr = PetscMalloc1(degree + 1, °rees);CHKERRQ(ierr); 786fbdc3dfeSToby Isaac ierr = PetscMalloc1((degree + 1) * npoints, &psingle);CHKERRQ(ierr); 787fbdc3dfeSToby Isaac for (i = 0; i <= degree; i++) degrees[i] = i; 788fbdc3dfeSToby Isaac for (i = 0; i <= k; i++) { 789fbdc3dfeSToby Isaac ierr = PetscDTJacobiEval_Internal(npoints, alpha, beta, i, points, degree + 1, degrees, psingle);CHKERRQ(ierr); 790fbdc3dfeSToby Isaac for (j = 0; j <= degree; j++) { 791fbdc3dfeSToby Isaac for (l = 0; l < npoints; l++) { 792fbdc3dfeSToby Isaac p[(j * (k + 1) + i) * npoints + l] = psingle[l * (degree + 1) + j]; 793fbdc3dfeSToby Isaac } 794fbdc3dfeSToby Isaac } 795fbdc3dfeSToby Isaac } 796fbdc3dfeSToby Isaac ierr = PetscFree(psingle);CHKERRQ(ierr); 797fbdc3dfeSToby Isaac ierr = PetscFree(degrees);CHKERRQ(ierr); 798fbdc3dfeSToby Isaac PetscFunctionReturn(0); 799fbdc3dfeSToby Isaac } 800fbdc3dfeSToby Isaac 801fbdc3dfeSToby Isaac /*@ 80294e21283SToby Isaac PetscDTJacobiEval - evaluate Jacobi polynomials for the weight function $(1.+x)^{\alpha} (1.-x)^{\beta}$ 80394e21283SToby Isaac at points 80494e21283SToby Isaac 80594e21283SToby Isaac Not Collective 80694e21283SToby Isaac 8074165533cSJose E. Roman Input Parameters: 80894e21283SToby Isaac + npoints - number of spatial points to evaluate at 80994e21283SToby Isaac . alpha - the left exponent > -1 81094e21283SToby Isaac . beta - the right exponent > -1 81194e21283SToby Isaac . points - array of locations to evaluate at 81294e21283SToby Isaac . ndegree - number of basis degrees to evaluate 81394e21283SToby Isaac - degrees - sorted array of degrees to evaluate 81494e21283SToby Isaac 8154165533cSJose E. Roman Output Parameters: 81694e21283SToby Isaac + B - row-oriented basis evaluation matrix B[point*ndegree + degree] (dimension npoints*ndegrees, allocated by caller) (or NULL) 81794e21283SToby Isaac . D - row-oriented derivative evaluation matrix (or NULL) 81894e21283SToby Isaac - D2 - row-oriented second derivative evaluation matrix (or NULL) 81994e21283SToby Isaac 82094e21283SToby Isaac Level: intermediate 82194e21283SToby Isaac 82294e21283SToby Isaac .seealso: PetscDTGaussQuadrature() 82394e21283SToby Isaac @*/ 82494e21283SToby Isaac PetscErrorCode PetscDTJacobiEval(PetscInt npoints,PetscReal alpha, PetscReal beta, const PetscReal *points,PetscInt ndegree,const PetscInt *degrees,PetscReal *B,PetscReal *D,PetscReal *D2) 82594e21283SToby Isaac { 82694e21283SToby Isaac PetscErrorCode ierr; 82794e21283SToby Isaac 82894e21283SToby Isaac PetscFunctionBegin; 82994e21283SToby Isaac if (alpha <= -1.) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"alpha must be > -1."); 83094e21283SToby Isaac if (beta <= -1.) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"beta must be > -1."); 83194e21283SToby Isaac if (!npoints || !ndegree) PetscFunctionReturn(0); 83294e21283SToby Isaac if (B) {ierr = PetscDTJacobiEval_Internal(npoints, alpha, beta, 0, points, ndegree, degrees, B);CHKERRQ(ierr);} 83394e21283SToby Isaac if (D) {ierr = PetscDTJacobiEval_Internal(npoints, alpha, beta, 1, points, ndegree, degrees, D);CHKERRQ(ierr);} 83494e21283SToby Isaac if (D2) {ierr = PetscDTJacobiEval_Internal(npoints, alpha, beta, 2, points, ndegree, degrees, D2);CHKERRQ(ierr);} 83594e21283SToby Isaac PetscFunctionReturn(0); 83694e21283SToby Isaac } 83794e21283SToby Isaac 83894e21283SToby Isaac /*@ 83994e21283SToby Isaac PetscDTLegendreEval - evaluate Legendre polynomials at points 84037045ce4SJed Brown 84137045ce4SJed Brown Not Collective 84237045ce4SJed Brown 8434165533cSJose E. Roman Input Parameters: 84437045ce4SJed Brown + npoints - number of spatial points to evaluate at 84537045ce4SJed Brown . points - array of locations to evaluate at 84637045ce4SJed Brown . ndegree - number of basis degrees to evaluate 84737045ce4SJed Brown - degrees - sorted array of degrees to evaluate 84837045ce4SJed Brown 8494165533cSJose E. Roman Output Parameters: 8500298fd71SBarry Smith + B - row-oriented basis evaluation matrix B[point*ndegree + degree] (dimension npoints*ndegrees, allocated by caller) (or NULL) 8510298fd71SBarry Smith . D - row-oriented derivative evaluation matrix (or NULL) 8520298fd71SBarry Smith - D2 - row-oriented second derivative evaluation matrix (or NULL) 85337045ce4SJed Brown 85437045ce4SJed Brown Level: intermediate 85537045ce4SJed Brown 85637045ce4SJed Brown .seealso: PetscDTGaussQuadrature() 85737045ce4SJed Brown @*/ 85837045ce4SJed Brown PetscErrorCode PetscDTLegendreEval(PetscInt npoints,const PetscReal *points,PetscInt ndegree,const PetscInt *degrees,PetscReal *B,PetscReal *D,PetscReal *D2) 85937045ce4SJed Brown { 86094e21283SToby Isaac PetscErrorCode ierr; 86137045ce4SJed Brown 86237045ce4SJed Brown PetscFunctionBegin; 86394e21283SToby Isaac ierr = PetscDTJacobiEval(npoints, 0., 0., points, ndegree, degrees, B, D, D2);CHKERRQ(ierr); 86437045ce4SJed Brown PetscFunctionReturn(0); 86537045ce4SJed Brown } 86637045ce4SJed Brown 867fbdc3dfeSToby Isaac /*@ 868fbdc3dfeSToby Isaac PetscDTIndexToGradedOrder - convert an index into a tuple of monomial degrees in a graded order (that is, if the degree sum of tuple x is less than the degree sum of tuple y, then the index of x is smaller than the index of y) 869fbdc3dfeSToby Isaac 870fbdc3dfeSToby Isaac Input Parameters: 871fbdc3dfeSToby Isaac + len - the desired length of the degree tuple 872fbdc3dfeSToby Isaac - index - the index to convert: should be >= 0 873fbdc3dfeSToby Isaac 874fbdc3dfeSToby Isaac Output Parameter: 875fbdc3dfeSToby Isaac . degtup - will be filled with a tuple of degrees 876fbdc3dfeSToby Isaac 877fbdc3dfeSToby Isaac Level: beginner 878fbdc3dfeSToby Isaac 879fbdc3dfeSToby Isaac Note: for two tuples x and y with the same degree sum, partial degree sums over the final elements of the tuples 880fbdc3dfeSToby Isaac acts as a tiebreaker. For example, (2, 1, 1) and (1, 2, 1) have the same degree sum, but the degree sum over the 881fbdc3dfeSToby Isaac last two elements is smaller for the former, so (2, 1, 1) < (1, 2, 1). 882fbdc3dfeSToby Isaac 883fbdc3dfeSToby Isaac .seealso: PetscDTGradedOrderToIndex() 884fbdc3dfeSToby Isaac @*/ 885fbdc3dfeSToby Isaac PetscErrorCode PetscDTIndexToGradedOrder(PetscInt len, PetscInt index, PetscInt degtup[]) 886fbdc3dfeSToby Isaac { 887fbdc3dfeSToby Isaac PetscInt i, total; 888fbdc3dfeSToby Isaac PetscInt sum; 889fbdc3dfeSToby Isaac 890fbdc3dfeSToby Isaac PetscFunctionBeginHot; 891fbdc3dfeSToby Isaac if (len < 0) SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "length must be non-negative"); 892fbdc3dfeSToby Isaac if (index < 0) SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "index must be non-negative"); 893fbdc3dfeSToby Isaac total = 1; 894fbdc3dfeSToby Isaac sum = 0; 895fbdc3dfeSToby Isaac while (index >= total) { 896fbdc3dfeSToby Isaac index -= total; 897fbdc3dfeSToby Isaac total = (total * (len + sum)) / (sum + 1); 898fbdc3dfeSToby Isaac sum++; 899fbdc3dfeSToby Isaac } 900fbdc3dfeSToby Isaac for (i = 0; i < len; i++) { 901fbdc3dfeSToby Isaac PetscInt c; 902fbdc3dfeSToby Isaac 903fbdc3dfeSToby Isaac degtup[i] = sum; 904fbdc3dfeSToby Isaac for (c = 0, total = 1; c < sum; c++) { 905fbdc3dfeSToby Isaac /* going into the loop, total is the number of way to have a tuple of sum exactly c with length len - 1 - i */ 906fbdc3dfeSToby Isaac if (index < total) break; 907fbdc3dfeSToby Isaac index -= total; 908fbdc3dfeSToby Isaac total = (total * (len - 1 - i + c)) / (c + 1); 909fbdc3dfeSToby Isaac degtup[i]--; 910fbdc3dfeSToby Isaac } 911fbdc3dfeSToby Isaac sum -= degtup[i]; 912fbdc3dfeSToby Isaac } 913fbdc3dfeSToby Isaac PetscFunctionReturn(0); 914fbdc3dfeSToby Isaac } 915fbdc3dfeSToby Isaac 916fbdc3dfeSToby Isaac /*@ 917fbdc3dfeSToby Isaac PetscDTGradedOrderToIndex - convert a tuple into an index in a graded order, the inverse of PetscDTIndexToGradedOrder(). 918fbdc3dfeSToby Isaac 919fbdc3dfeSToby Isaac Input Parameters: 920fbdc3dfeSToby Isaac + len - the length of the degree tuple 921fbdc3dfeSToby Isaac - degtup - tuple with this length 922fbdc3dfeSToby Isaac 923fbdc3dfeSToby Isaac Output Parameter: 924fbdc3dfeSToby Isaac . index - index in graded order: >= 0 925fbdc3dfeSToby Isaac 926fbdc3dfeSToby Isaac Level: Beginner 927fbdc3dfeSToby Isaac 928fbdc3dfeSToby Isaac Note: for two tuples x and y with the same degree sum, partial degree sums over the final elements of the tuples 929fbdc3dfeSToby Isaac acts as a tiebreaker. For example, (2, 1, 1) and (1, 2, 1) have the same degree sum, but the degree sum over the 930fbdc3dfeSToby Isaac last two elements is smaller for the former, so (2, 1, 1) < (1, 2, 1). 931fbdc3dfeSToby Isaac 932fbdc3dfeSToby Isaac .seealso: PetscDTIndexToGradedOrder() 933fbdc3dfeSToby Isaac @*/ 934fbdc3dfeSToby Isaac PetscErrorCode PetscDTGradedOrderToIndex(PetscInt len, const PetscInt degtup[], PetscInt *index) 935fbdc3dfeSToby Isaac { 936fbdc3dfeSToby Isaac PetscInt i, idx, sum, total; 937fbdc3dfeSToby Isaac 938fbdc3dfeSToby Isaac PetscFunctionBeginHot; 939fbdc3dfeSToby Isaac if (len < 0) SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "length must be non-negative"); 940fbdc3dfeSToby Isaac for (i = 0, sum = 0; i < len; i++) sum += degtup[i]; 941fbdc3dfeSToby Isaac idx = 0; 942fbdc3dfeSToby Isaac total = 1; 943fbdc3dfeSToby Isaac for (i = 0; i < sum; i++) { 944fbdc3dfeSToby Isaac idx += total; 945fbdc3dfeSToby Isaac total = (total * (len + i)) / (i + 1); 946fbdc3dfeSToby Isaac } 947fbdc3dfeSToby Isaac for (i = 0; i < len - 1; i++) { 948fbdc3dfeSToby Isaac PetscInt c; 949fbdc3dfeSToby Isaac 950fbdc3dfeSToby Isaac total = 1; 951fbdc3dfeSToby Isaac sum -= degtup[i]; 952fbdc3dfeSToby Isaac for (c = 0; c < sum; c++) { 953fbdc3dfeSToby Isaac idx += total; 954fbdc3dfeSToby Isaac total = (total * (len - 1 - i + c)) / (c + 1); 955fbdc3dfeSToby Isaac } 956fbdc3dfeSToby Isaac } 957fbdc3dfeSToby Isaac *index = idx; 958fbdc3dfeSToby Isaac PetscFunctionReturn(0); 959fbdc3dfeSToby Isaac } 960fbdc3dfeSToby Isaac 961e3aa2e09SToby Isaac static PetscBool PKDCite = PETSC_FALSE; 962e3aa2e09SToby Isaac const char PKDCitation[] = "@article{Kirby2010,\n" 963e3aa2e09SToby Isaac " title={Singularity-free evaluation of collapsed-coordinate orthogonal polynomials},\n" 964e3aa2e09SToby Isaac " author={Kirby, Robert C},\n" 965e3aa2e09SToby Isaac " journal={ACM Transactions on Mathematical Software (TOMS)},\n" 966e3aa2e09SToby Isaac " volume={37},\n" 967e3aa2e09SToby Isaac " number={1},\n" 968e3aa2e09SToby Isaac " pages={1--16},\n" 969e3aa2e09SToby Isaac " year={2010},\n" 970e3aa2e09SToby Isaac " publisher={ACM New York, NY, USA}\n}\n"; 971e3aa2e09SToby Isaac 972fbdc3dfeSToby Isaac /*@ 973fbdc3dfeSToby Isaac PetscDTPKDEvalJet - Evaluate the jet (function and derivatives) of the Prioriol-Koornwinder-Dubiner (PKD) basis for 974fbdc3dfeSToby Isaac the space of polynomials up to a given degree. The PKD basis is L2-orthonormal on the biunit simplex (which is used 975fbdc3dfeSToby Isaac as the reference element for finite elements in PETSc), which makes it a stable basis to use for evaluating 976fbdc3dfeSToby Isaac polynomials in that domain. 977fbdc3dfeSToby Isaac 9784165533cSJose E. Roman Input Parameters: 979fbdc3dfeSToby Isaac + dim - the number of variables in the multivariate polynomials 980fbdc3dfeSToby Isaac . npoints - the number of points to evaluate the polynomials at 981fbdc3dfeSToby Isaac . points - [npoints x dim] array of point coordinates 982fbdc3dfeSToby Isaac . degree - the degree (sum of degrees on the variables in a monomial) of the polynomial space to evaluate. There are ((dim + degree) choose dim) polynomials in this space. 983fbdc3dfeSToby Isaac - k - the maximum order partial derivative to evaluate in the jet. There are (dim + k choose dim) partial derivatives 984fbdc3dfeSToby Isaac in the jet. Choosing k = 0 means to evaluate just the function and no derivatives 985fbdc3dfeSToby Isaac 986fbdc3dfeSToby Isaac Output Argments: 987fbdc3dfeSToby Isaac - p - an array containing the evaluations of the PKD polynomials' jets on the points. The size is ((dim + degree) 988fbdc3dfeSToby Isaac choose dim) x ((dim + k) choose dim) x npoints, which also describes the order of the dimensions of this 989fbdc3dfeSToby Isaac three-dimensional array: the first (slowest varying) dimension is basis function index; the second dimension is jet 990fbdc3dfeSToby Isaac index; the third (fastest varying) dimension is the index of the evaluation point. 991fbdc3dfeSToby Isaac 992fbdc3dfeSToby Isaac Level: advanced 993fbdc3dfeSToby Isaac 994fbdc3dfeSToby Isaac Note: The ordering of the basis functions, and the ordering of the derivatives in the jet, both follow the graded 995fbdc3dfeSToby Isaac ordering of PetscDTIndexToGradedOrder() and PetscDTGradedOrderToIndex(). For example, in 3D, the polynomial with 996fbdc3dfeSToby Isaac leading monomial x^3,y^1,z^2, which as degree tuple (2,0,1), which by PetscDTGradedOrderToIndex() has index 12 (it is the 13th basis function in the space); 997fbdc3dfeSToby Isaac the partial derivative $\partial_x \partial_z$ has order tuple (1,0,1), appears at index 6 in the jet (it is the 7th partial derivative in the jet). 998fbdc3dfeSToby Isaac 999e3aa2e09SToby Isaac The implementation uses Kirby's singularity-free evaluation algorithm, https://doi.org/10.1145/1644001.1644006. 1000e3aa2e09SToby Isaac 1001fbdc3dfeSToby Isaac .seealso: PetscDTGradedOrderToIndex(), PetscDTIndexToGradedOrder(), PetscDTJacobiEvalJet() 1002fbdc3dfeSToby Isaac @*/ 1003fbdc3dfeSToby Isaac PetscErrorCode PetscDTPKDEvalJet(PetscInt dim, PetscInt npoints, const PetscReal points[], PetscInt degree, PetscInt k, PetscReal p[]) 1004fbdc3dfeSToby Isaac { 1005fbdc3dfeSToby Isaac PetscInt degidx, kidx, d, pt; 1006fbdc3dfeSToby Isaac PetscInt Nk, Ndeg; 1007fbdc3dfeSToby Isaac PetscInt *ktup, *degtup; 1008fbdc3dfeSToby Isaac PetscReal *scales, initscale, scaleexp; 1009fbdc3dfeSToby Isaac PetscErrorCode ierr; 1010fbdc3dfeSToby Isaac 1011fbdc3dfeSToby Isaac PetscFunctionBegin; 1012e3aa2e09SToby Isaac ierr = PetscCitationsRegister(PKDCitation, &PKDCite);CHKERRQ(ierr); 1013fbdc3dfeSToby Isaac ierr = PetscDTBinomialInt(dim + k, k, &Nk);CHKERRQ(ierr); 1014fbdc3dfeSToby Isaac ierr = PetscDTBinomialInt(degree + dim, degree, &Ndeg);CHKERRQ(ierr); 1015fbdc3dfeSToby Isaac ierr = PetscMalloc2(dim, °tup, dim, &ktup);CHKERRQ(ierr); 1016fbdc3dfeSToby Isaac ierr = PetscMalloc1(Ndeg, &scales);CHKERRQ(ierr); 1017fbdc3dfeSToby Isaac initscale = 1.; 1018fbdc3dfeSToby Isaac if (dim > 1) { 1019fbdc3dfeSToby Isaac ierr = PetscDTBinomial(dim,2,&scaleexp);CHKERRQ(ierr); 1020*2f613bf5SBarry Smith initscale = PetscPowReal(2.,scaleexp*0.5); 1021fbdc3dfeSToby Isaac } 1022fbdc3dfeSToby Isaac for (degidx = 0; degidx < Ndeg; degidx++) { 1023fbdc3dfeSToby Isaac PetscInt e, i; 1024fbdc3dfeSToby Isaac PetscInt m1idx = -1, m2idx = -1; 1025fbdc3dfeSToby Isaac PetscInt n; 1026fbdc3dfeSToby Isaac PetscInt degsum; 1027fbdc3dfeSToby Isaac PetscReal alpha; 1028fbdc3dfeSToby Isaac PetscReal cnm1, cnm1x, cnm2; 1029fbdc3dfeSToby Isaac PetscReal norm; 1030fbdc3dfeSToby Isaac 1031fbdc3dfeSToby Isaac ierr = PetscDTIndexToGradedOrder(dim, degidx, degtup);CHKERRQ(ierr); 1032fbdc3dfeSToby Isaac for (d = dim - 1; d >= 0; d--) if (degtup[d]) break; 1033fbdc3dfeSToby Isaac if (d < 0) { /* constant is 1 everywhere, all derivatives are zero */ 1034fbdc3dfeSToby Isaac scales[degidx] = initscale; 1035fbdc3dfeSToby Isaac for (e = 0; e < dim; e++) { 1036fbdc3dfeSToby Isaac ierr = PetscDTJacobiNorm(e,0.,0,&norm);CHKERRQ(ierr); 1037fbdc3dfeSToby Isaac scales[degidx] /= norm; 1038fbdc3dfeSToby Isaac } 1039fbdc3dfeSToby Isaac for (i = 0; i < npoints; i++) p[degidx * Nk * npoints + i] = 1.; 1040fbdc3dfeSToby Isaac for (i = 0; i < (Nk - 1) * npoints; i++) p[(degidx * Nk + 1) * npoints + i] = 0.; 1041fbdc3dfeSToby Isaac continue; 1042fbdc3dfeSToby Isaac } 1043fbdc3dfeSToby Isaac n = degtup[d]; 1044fbdc3dfeSToby Isaac degtup[d]--; 1045fbdc3dfeSToby Isaac ierr = PetscDTGradedOrderToIndex(dim, degtup, &m1idx);CHKERRQ(ierr); 1046fbdc3dfeSToby Isaac if (degtup[d] > 0) { 1047fbdc3dfeSToby Isaac degtup[d]--; 1048fbdc3dfeSToby Isaac ierr = PetscDTGradedOrderToIndex(dim, degtup, &m2idx);CHKERRQ(ierr); 1049fbdc3dfeSToby Isaac degtup[d]++; 1050fbdc3dfeSToby Isaac } 1051fbdc3dfeSToby Isaac degtup[d]++; 1052fbdc3dfeSToby Isaac for (e = 0, degsum = 0; e < d; e++) degsum += degtup[e]; 1053fbdc3dfeSToby Isaac alpha = 2 * degsum + d; 1054fbdc3dfeSToby Isaac PetscDTJacobiRecurrence_Internal(n,alpha,0.,cnm1,cnm1x,cnm2); 1055fbdc3dfeSToby Isaac 1056fbdc3dfeSToby Isaac scales[degidx] = initscale; 1057fbdc3dfeSToby Isaac for (e = 0, degsum = 0; e < dim; e++) { 1058fbdc3dfeSToby Isaac PetscInt f; 1059fbdc3dfeSToby Isaac PetscReal ealpha; 1060fbdc3dfeSToby Isaac PetscReal enorm; 1061fbdc3dfeSToby Isaac 1062fbdc3dfeSToby Isaac ealpha = 2 * degsum + e; 1063fbdc3dfeSToby Isaac for (f = 0; f < degsum; f++) scales[degidx] *= 2.; 1064fbdc3dfeSToby Isaac ierr = PetscDTJacobiNorm(ealpha,0.,degtup[e],&enorm);CHKERRQ(ierr); 1065fbdc3dfeSToby Isaac scales[degidx] /= enorm; 1066fbdc3dfeSToby Isaac degsum += degtup[e]; 1067fbdc3dfeSToby Isaac } 1068fbdc3dfeSToby Isaac 1069fbdc3dfeSToby Isaac for (pt = 0; pt < npoints; pt++) { 1070fbdc3dfeSToby Isaac /* compute the multipliers */ 1071fbdc3dfeSToby Isaac PetscReal thetanm1, thetanm1x, thetanm2; 1072fbdc3dfeSToby Isaac 1073fbdc3dfeSToby Isaac thetanm1x = dim - (d+1) + 2.*points[pt * dim + d]; 1074fbdc3dfeSToby Isaac for (e = d+1; e < dim; e++) thetanm1x += points[pt * dim + e]; 1075fbdc3dfeSToby Isaac thetanm1x *= 0.5; 1076fbdc3dfeSToby Isaac thetanm1 = (2. - (dim-(d+1))); 1077fbdc3dfeSToby Isaac for (e = d+1; e < dim; e++) thetanm1 -= points[pt * dim + e]; 1078fbdc3dfeSToby Isaac thetanm1 *= 0.5; 1079fbdc3dfeSToby Isaac thetanm2 = thetanm1 * thetanm1; 1080fbdc3dfeSToby Isaac 1081fbdc3dfeSToby Isaac for (kidx = 0; kidx < Nk; kidx++) { 1082fbdc3dfeSToby Isaac PetscInt f; 1083fbdc3dfeSToby Isaac 1084fbdc3dfeSToby Isaac ierr = PetscDTIndexToGradedOrder(dim, kidx, ktup);CHKERRQ(ierr); 1085fbdc3dfeSToby Isaac /* first sum in the same derivative terms */ 1086fbdc3dfeSToby Isaac p[(degidx * Nk + kidx) * npoints + pt] = (cnm1 * thetanm1 + cnm1x * thetanm1x) * p[(m1idx * Nk + kidx) * npoints + pt]; 1087fbdc3dfeSToby Isaac if (m2idx >= 0) { 1088fbdc3dfeSToby Isaac p[(degidx * Nk + kidx) * npoints + pt] -= cnm2 * thetanm2 * p[(m2idx * Nk + kidx) * npoints + pt]; 1089fbdc3dfeSToby Isaac } 1090fbdc3dfeSToby Isaac 1091fbdc3dfeSToby Isaac for (f = d; f < dim; f++) { 1092fbdc3dfeSToby Isaac PetscInt km1idx, mplty = ktup[f]; 1093fbdc3dfeSToby Isaac 1094fbdc3dfeSToby Isaac if (!mplty) continue; 1095fbdc3dfeSToby Isaac ktup[f]--; 1096fbdc3dfeSToby Isaac ierr = PetscDTGradedOrderToIndex(dim, ktup, &km1idx);CHKERRQ(ierr); 1097fbdc3dfeSToby Isaac 1098fbdc3dfeSToby Isaac /* the derivative of cnm1x * thetanm1x wrt x variable f is 0.5 * cnm1x if f > d otherwise it is cnm1x */ 1099fbdc3dfeSToby Isaac /* the derivative of cnm1 * thetanm1 wrt x variable f is 0 if f == d, otherwise it is -0.5 * cnm1 */ 1100fbdc3dfeSToby Isaac /* the derivative of -cnm2 * thetanm2 wrt x variable f is 0 if f == d, otherwise it is cnm2 * thetanm1 */ 1101fbdc3dfeSToby Isaac if (f > d) { 1102fbdc3dfeSToby Isaac PetscInt f2; 1103fbdc3dfeSToby Isaac 1104fbdc3dfeSToby Isaac p[(degidx * Nk + kidx) * npoints + pt] += mplty * 0.5 * (cnm1x - cnm1) * p[(m1idx * Nk + km1idx) * npoints + pt]; 1105fbdc3dfeSToby Isaac if (m2idx >= 0) { 1106fbdc3dfeSToby Isaac p[(degidx * Nk + kidx) * npoints + pt] += mplty * cnm2 * thetanm1 * p[(m2idx * Nk + km1idx) * npoints + pt]; 1107fbdc3dfeSToby Isaac /* second derivatives of -cnm2 * thetanm2 wrt x variable f,f2 is like - 0.5 * cnm2 */ 1108fbdc3dfeSToby Isaac for (f2 = f; f2 < dim; f2++) { 1109fbdc3dfeSToby Isaac PetscInt km2idx, mplty2 = ktup[f2]; 1110fbdc3dfeSToby Isaac PetscInt factor; 1111fbdc3dfeSToby Isaac 1112fbdc3dfeSToby Isaac if (!mplty2) continue; 1113fbdc3dfeSToby Isaac ktup[f2]--; 1114fbdc3dfeSToby Isaac ierr = PetscDTGradedOrderToIndex(dim, ktup, &km2idx);CHKERRQ(ierr); 1115fbdc3dfeSToby Isaac 1116fbdc3dfeSToby Isaac factor = mplty * mplty2; 1117fbdc3dfeSToby Isaac if (f == f2) factor /= 2; 1118fbdc3dfeSToby Isaac p[(degidx * Nk + kidx) * npoints + pt] -= 0.5 * factor * cnm2 * p[(m2idx * Nk + km2idx) * npoints + pt]; 1119fbdc3dfeSToby Isaac ktup[f2]++; 1120fbdc3dfeSToby Isaac } 11213034baaeSToby Isaac } 1122fbdc3dfeSToby Isaac } else { 1123fbdc3dfeSToby Isaac p[(degidx * Nk + kidx) * npoints + pt] += mplty * cnm1x * p[(m1idx * Nk + km1idx) * npoints + pt]; 1124fbdc3dfeSToby Isaac } 1125fbdc3dfeSToby Isaac ktup[f]++; 1126fbdc3dfeSToby Isaac } 1127fbdc3dfeSToby Isaac } 1128fbdc3dfeSToby Isaac } 1129fbdc3dfeSToby Isaac } 1130fbdc3dfeSToby Isaac for (degidx = 0; degidx < Ndeg; degidx++) { 1131fbdc3dfeSToby Isaac PetscReal scale = scales[degidx]; 1132fbdc3dfeSToby Isaac PetscInt i; 1133fbdc3dfeSToby Isaac 1134fbdc3dfeSToby Isaac for (i = 0; i < Nk * npoints; i++) p[degidx*Nk*npoints + i] *= scale; 1135fbdc3dfeSToby Isaac } 1136fbdc3dfeSToby Isaac ierr = PetscFree(scales);CHKERRQ(ierr); 1137fbdc3dfeSToby Isaac ierr = PetscFree2(degtup, ktup);CHKERRQ(ierr); 1138fbdc3dfeSToby Isaac PetscFunctionReturn(0); 1139fbdc3dfeSToby Isaac } 1140fbdc3dfeSToby Isaac 1141e6a796c3SToby Isaac /* solve the symmetric tridiagonal eigenvalue system, writing the eigenvalues into eigs and the eigenvectors into V 1142e6a796c3SToby Isaac * with lds n; diag and subdiag are overwritten */ 1143e6a796c3SToby Isaac static PetscErrorCode PetscDTSymmetricTridiagonalEigensolve(PetscInt n, PetscReal diag[], PetscReal subdiag[], 1144e6a796c3SToby Isaac PetscReal eigs[], PetscScalar V[]) 1145e6a796c3SToby Isaac { 1146e6a796c3SToby Isaac char jobz = 'V'; /* eigenvalues and eigenvectors */ 1147e6a796c3SToby Isaac char range = 'A'; /* all eigenvalues will be found */ 1148e6a796c3SToby Isaac PetscReal VL = 0.; /* ignored because range is 'A' */ 1149e6a796c3SToby Isaac PetscReal VU = 0.; /* ignored because range is 'A' */ 1150e6a796c3SToby Isaac PetscBLASInt IL = 0; /* ignored because range is 'A' */ 1151e6a796c3SToby Isaac PetscBLASInt IU = 0; /* ignored because range is 'A' */ 1152e6a796c3SToby Isaac PetscReal abstol = 0.; /* unused */ 1153e6a796c3SToby Isaac PetscBLASInt bn, bm, ldz; /* bm will equal bn on exit */ 1154e6a796c3SToby Isaac PetscBLASInt *isuppz; 1155e6a796c3SToby Isaac PetscBLASInt lwork, liwork; 1156e6a796c3SToby Isaac PetscReal workquery; 1157e6a796c3SToby Isaac PetscBLASInt iworkquery; 1158e6a796c3SToby Isaac PetscBLASInt *iwork; 1159e6a796c3SToby Isaac PetscBLASInt info; 1160e6a796c3SToby Isaac PetscReal *work = NULL; 1161e6a796c3SToby Isaac PetscErrorCode ierr; 1162e6a796c3SToby Isaac 1163e6a796c3SToby Isaac PetscFunctionBegin; 1164e6a796c3SToby Isaac #if !defined(PETSCDTGAUSSIANQUADRATURE_EIG) 1165e6a796c3SToby Isaac SETERRQ(PETSC_COMM_SELF, PETSC_ERR_SUP_SYS, "A LAPACK symmetric tridiagonal eigensolver could not be found"); 1166e6a796c3SToby Isaac #endif 1167e6a796c3SToby Isaac ierr = PetscBLASIntCast(n, &bn);CHKERRQ(ierr); 1168e6a796c3SToby Isaac ierr = PetscBLASIntCast(n, &ldz);CHKERRQ(ierr); 1169e6a796c3SToby Isaac #if !defined(PETSC_MISSING_LAPACK_STEGR) 1170e6a796c3SToby Isaac ierr = PetscMalloc1(2 * n, &isuppz);CHKERRQ(ierr); 1171e6a796c3SToby Isaac lwork = -1; 1172e6a796c3SToby Isaac liwork = -1; 1173e6a796c3SToby Isaac PetscStackCallBLAS("LAPACKstegr",LAPACKstegr_(&jobz,&range,&bn,diag,subdiag,&VL,&VU,&IL,&IU,&abstol,&bm,eigs,V,&ldz,isuppz,&workquery,&lwork,&iworkquery,&liwork,&info)); 1174e6a796c3SToby Isaac if (info) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"xSTEGR error"); 1175e6a796c3SToby Isaac lwork = (PetscBLASInt) workquery; 1176e6a796c3SToby Isaac liwork = (PetscBLASInt) iworkquery; 1177e6a796c3SToby Isaac ierr = PetscMalloc2(lwork, &work, liwork, &iwork);CHKERRQ(ierr); 1178e6a796c3SToby Isaac ierr = PetscFPTrapPush(PETSC_FP_TRAP_OFF);CHKERRQ(ierr); 1179e6a796c3SToby Isaac PetscStackCallBLAS("LAPACKstegr",LAPACKstegr_(&jobz,&range,&bn,diag,subdiag,&VL,&VU,&IL,&IU,&abstol,&bm,eigs,V,&ldz,isuppz,work,&lwork,iwork,&liwork,&info)); 1180e6a796c3SToby Isaac ierr = PetscFPTrapPop();CHKERRQ(ierr); 1181e6a796c3SToby Isaac if (info) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"xSTEGR error"); 1182e6a796c3SToby Isaac ierr = PetscFree2(work, iwork);CHKERRQ(ierr); 1183e6a796c3SToby Isaac ierr = PetscFree(isuppz);CHKERRQ(ierr); 1184e6a796c3SToby Isaac #elif !defined(PETSC_MISSING_LAPACK_STEQR) 1185e6a796c3SToby Isaac jobz = 'I'; /* Compute eigenvalues and eigenvectors of the 1186e6a796c3SToby Isaac tridiagonal matrix. Z is initialized to the identity 1187e6a796c3SToby Isaac matrix. */ 1188e6a796c3SToby Isaac ierr = PetscMalloc1(PetscMax(1,2*n-2),&work);CHKERRQ(ierr); 1189e6a796c3SToby Isaac PetscStackCallBLAS("LAPACKsteqr",LAPACKsteqr_("I",&bn,diag,subdiag,V,&ldz,work,&info)); 1190e6a796c3SToby Isaac ierr = PetscFPTrapPop();CHKERRQ(ierr); 1191e6a796c3SToby Isaac if (info) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"xSTEQR error"); 1192e6a796c3SToby Isaac ierr = PetscFree(work);CHKERRQ(ierr); 1193e6a796c3SToby Isaac ierr = PetscArraycpy(eigs,diag,n);CHKERRQ(ierr); 1194e6a796c3SToby Isaac #endif 1195e6a796c3SToby Isaac PetscFunctionReturn(0); 1196e6a796c3SToby Isaac } 1197e6a796c3SToby Isaac 1198e6a796c3SToby Isaac /* Formula for the weights at the endpoints (-1 and 1) of Gauss-Lobatto-Jacobi 1199e6a796c3SToby Isaac * quadrature rules on the interval [-1, 1] */ 1200e6a796c3SToby Isaac static PetscErrorCode PetscDTGaussLobattoJacobiEndweights_Internal(PetscInt n, PetscReal alpha, PetscReal beta, PetscReal *leftw, PetscReal *rightw) 1201e6a796c3SToby Isaac { 1202e6a796c3SToby Isaac PetscReal twoab1; 1203e6a796c3SToby Isaac PetscInt m = n - 2; 1204e6a796c3SToby Isaac PetscReal a = alpha + 1.; 1205e6a796c3SToby Isaac PetscReal b = beta + 1.; 1206e6a796c3SToby Isaac PetscReal gra, grb; 1207e6a796c3SToby Isaac 1208e6a796c3SToby Isaac PetscFunctionBegin; 1209e6a796c3SToby Isaac twoab1 = PetscPowReal(2., a + b - 1.); 1210e6a796c3SToby Isaac #if defined(PETSC_HAVE_LGAMMA) 1211e6a796c3SToby Isaac grb = PetscExpReal(2. * PetscLGamma(b+1.) + PetscLGamma(m+1.) + PetscLGamma(m+a+1.) - 1212e6a796c3SToby Isaac (PetscLGamma(m+b+1) + PetscLGamma(m+a+b+1.))); 1213e6a796c3SToby Isaac gra = PetscExpReal(2. * PetscLGamma(a+1.) + PetscLGamma(m+1.) + PetscLGamma(m+b+1.) - 1214e6a796c3SToby Isaac (PetscLGamma(m+a+1) + PetscLGamma(m+a+b+1.))); 1215e6a796c3SToby Isaac #else 1216e6a796c3SToby Isaac { 1217e6a796c3SToby Isaac PetscInt alphai = (PetscInt) alpha; 1218e6a796c3SToby Isaac PetscInt betai = (PetscInt) beta; 121994e21283SToby Isaac PetscErrorCode ierr; 1220e6a796c3SToby Isaac 1221e6a796c3SToby Isaac if ((PetscReal) alphai == alpha && (PetscReal) betai == beta) { 1222e6a796c3SToby Isaac PetscReal binom1, binom2; 1223e6a796c3SToby Isaac 1224e6a796c3SToby Isaac ierr = PetscDTBinomial(m+b, b, &binom1);CHKERRQ(ierr); 1225e6a796c3SToby Isaac ierr = PetscDTBinomial(m+a+b, b, &binom2);CHKERRQ(ierr); 1226e6a796c3SToby Isaac grb = 1./ (binom1 * binom2); 1227e6a796c3SToby Isaac ierr = PetscDTBinomial(m+a, a, &binom1);CHKERRQ(ierr); 1228e6a796c3SToby Isaac ierr = PetscDTBinomial(m+a+b, a, &binom2);CHKERRQ(ierr); 1229e6a796c3SToby Isaac gra = 1./ (binom1 * binom2); 1230e6a796c3SToby Isaac } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"lgamma() - math routine is unavailable."); 1231e6a796c3SToby Isaac } 1232e6a796c3SToby Isaac #endif 1233e6a796c3SToby Isaac *leftw = twoab1 * grb / b; 1234e6a796c3SToby Isaac *rightw = twoab1 * gra / a; 1235e6a796c3SToby Isaac PetscFunctionReturn(0); 1236e6a796c3SToby Isaac } 1237e6a796c3SToby Isaac 1238e6a796c3SToby Isaac /* Evaluates the nth jacobi polynomial with weight parameters a,b at a point x. 1239e6a796c3SToby Isaac Recurrence relations implemented from the pseudocode given in Karniadakis and Sherwin, Appendix B */ 1240e6a796c3SToby Isaac PETSC_STATIC_INLINE PetscErrorCode PetscDTComputeJacobi(PetscReal a, PetscReal b, PetscInt n, PetscReal x, PetscReal *P) 1241e6a796c3SToby Isaac { 124294e21283SToby Isaac PetscReal pn1, pn2; 124394e21283SToby Isaac PetscReal cnm1, cnm1x, cnm2; 1244e6a796c3SToby Isaac PetscInt k; 1245e6a796c3SToby Isaac 1246e6a796c3SToby Isaac PetscFunctionBegin; 1247e6a796c3SToby Isaac if (!n) {*P = 1.0; PetscFunctionReturn(0);} 124894e21283SToby Isaac PetscDTJacobiRecurrence_Internal(1,a,b,cnm1,cnm1x,cnm2); 124994e21283SToby Isaac pn2 = 1.; 125094e21283SToby Isaac pn1 = cnm1 + cnm1x*x; 125194e21283SToby Isaac if (n == 1) {*P = pn1; PetscFunctionReturn(0);} 1252e6a796c3SToby Isaac *P = 0.0; 1253e6a796c3SToby Isaac for (k = 2; k < n+1; ++k) { 125494e21283SToby Isaac PetscDTJacobiRecurrence_Internal(k,a,b,cnm1,cnm1x,cnm2); 1255e6a796c3SToby Isaac 125694e21283SToby Isaac *P = (cnm1 + cnm1x*x)*pn1 - cnm2*pn2; 1257e6a796c3SToby Isaac pn2 = pn1; 1258e6a796c3SToby Isaac pn1 = *P; 1259e6a796c3SToby Isaac } 1260e6a796c3SToby Isaac PetscFunctionReturn(0); 1261e6a796c3SToby Isaac } 1262e6a796c3SToby Isaac 1263e6a796c3SToby Isaac /* Evaluates the first derivative of P_{n}^{a,b} at a point x. */ 1264e6a796c3SToby Isaac PETSC_STATIC_INLINE PetscErrorCode PetscDTComputeJacobiDerivative(PetscReal a, PetscReal b, PetscInt n, PetscReal x, PetscInt k, PetscReal *P) 1265e6a796c3SToby Isaac { 1266e6a796c3SToby Isaac PetscReal nP; 1267e6a796c3SToby Isaac PetscInt i; 1268e6a796c3SToby Isaac PetscErrorCode ierr; 1269e6a796c3SToby Isaac 1270e6a796c3SToby Isaac PetscFunctionBegin; 127117a42bb7SSatish Balay *P = 0.0; 127217a42bb7SSatish Balay if (k > n) PetscFunctionReturn(0); 1273e6a796c3SToby Isaac ierr = PetscDTComputeJacobi(a+k, b+k, n-k, x, &nP);CHKERRQ(ierr); 1274e6a796c3SToby Isaac for (i = 0; i < k; i++) nP *= (a + b + n + 1. + i) * 0.5; 1275e6a796c3SToby Isaac *P = nP; 1276e6a796c3SToby Isaac PetscFunctionReturn(0); 1277e6a796c3SToby Isaac } 1278e6a796c3SToby Isaac 1279e6a796c3SToby Isaac static PetscErrorCode PetscDTGaussJacobiQuadrature_Newton_Internal(PetscInt npoints, PetscReal a, PetscReal b, PetscReal x[], PetscReal w[]) 1280e6a796c3SToby Isaac { 1281e6a796c3SToby Isaac PetscInt maxIter = 100; 128294e21283SToby Isaac PetscReal eps = PetscExpReal(0.75 * PetscLogReal(PETSC_MACHINE_EPSILON)); 1283200b5abcSJed Brown PetscReal a1, a6, gf; 1284e6a796c3SToby Isaac PetscInt k; 1285e6a796c3SToby Isaac PetscErrorCode ierr; 1286e6a796c3SToby Isaac 1287e6a796c3SToby Isaac PetscFunctionBegin; 1288e6a796c3SToby Isaac 1289e6a796c3SToby Isaac a1 = PetscPowReal(2.0, a+b+1); 129094e21283SToby Isaac #if defined(PETSC_HAVE_LGAMMA) 1291200b5abcSJed Brown { 1292200b5abcSJed Brown PetscReal a2, a3, a4, a5; 129394e21283SToby Isaac a2 = PetscLGamma(a + npoints + 1); 129494e21283SToby Isaac a3 = PetscLGamma(b + npoints + 1); 129594e21283SToby Isaac a4 = PetscLGamma(a + b + npoints + 1); 129694e21283SToby Isaac a5 = PetscLGamma(npoints + 1); 129794e21283SToby Isaac gf = PetscExpReal(a2 + a3 - (a4 + a5)); 1298200b5abcSJed Brown } 1299e6a796c3SToby Isaac #else 1300e6a796c3SToby Isaac { 1301e6a796c3SToby Isaac PetscInt ia, ib; 1302e6a796c3SToby Isaac 1303e6a796c3SToby Isaac ia = (PetscInt) a; 1304e6a796c3SToby Isaac ib = (PetscInt) b; 130594e21283SToby Isaac gf = 1.; 130694e21283SToby Isaac if (ia == a && ia >= 0) { /* compute ratio of rising factorals wrt a */ 130794e21283SToby Isaac for (k = 0; k < ia; k++) gf *= (npoints + 1. + k) / (npoints + b + 1. + k); 130894e21283SToby Isaac } else if (b == b && ib >= 0) { /* compute ratio of rising factorials wrt b */ 130994e21283SToby Isaac for (k = 0; k < ib; k++) gf *= (npoints + 1. + k) / (npoints + a + 1. + k); 131094e21283SToby Isaac } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"lgamma() - math routine is unavailable."); 1311e6a796c3SToby Isaac } 1312e6a796c3SToby Isaac #endif 1313e6a796c3SToby Isaac 131494e21283SToby Isaac a6 = a1 * gf; 1315e6a796c3SToby Isaac /* Computes the m roots of P_{m}^{a,b} on [-1,1] by Newton's method with Chebyshev points as initial guesses. 1316e6a796c3SToby Isaac Algorithm implemented from the pseudocode given by Karniadakis and Sherwin and Python in FIAT */ 1317e6a796c3SToby Isaac for (k = 0; k < npoints; ++k) { 131894e21283SToby Isaac PetscReal r = PetscCosReal(PETSC_PI * (1. - (4.*k + 3. + 2.*b) / (4.*npoints + 2.*(a + b + 1.)))), dP; 1319e6a796c3SToby Isaac PetscInt j; 1320e6a796c3SToby Isaac 1321e6a796c3SToby Isaac if (k > 0) r = 0.5 * (r + x[k-1]); 1322e6a796c3SToby Isaac for (j = 0; j < maxIter; ++j) { 1323e6a796c3SToby Isaac PetscReal s = 0.0, delta, f, fp; 1324e6a796c3SToby Isaac PetscInt i; 1325e6a796c3SToby Isaac 1326e6a796c3SToby Isaac for (i = 0; i < k; ++i) s = s + 1.0 / (r - x[i]); 1327e6a796c3SToby Isaac ierr = PetscDTComputeJacobi(a, b, npoints, r, &f);CHKERRQ(ierr); 1328e6a796c3SToby Isaac ierr = PetscDTComputeJacobiDerivative(a, b, npoints, r, 1, &fp);CHKERRQ(ierr); 1329e6a796c3SToby Isaac delta = f / (fp - f * s); 1330e6a796c3SToby Isaac r = r - delta; 1331e6a796c3SToby Isaac if (PetscAbsReal(delta) < eps) break; 1332e6a796c3SToby Isaac } 1333e6a796c3SToby Isaac x[k] = r; 1334e6a796c3SToby Isaac ierr = PetscDTComputeJacobiDerivative(a, b, npoints, x[k], 1, &dP);CHKERRQ(ierr); 1335e6a796c3SToby Isaac w[k] = a6 / (1.0 - PetscSqr(x[k])) / PetscSqr(dP); 1336e6a796c3SToby Isaac } 1337e6a796c3SToby Isaac PetscFunctionReturn(0); 1338e6a796c3SToby Isaac } 1339e6a796c3SToby Isaac 134094e21283SToby Isaac /* Compute the diagonals of the Jacobi matrix used in Golub & Welsch algorithms for Gauss-Jacobi 1341e6a796c3SToby Isaac * quadrature weight calculations on [-1,1] for exponents (1. + x)^a (1.-x)^b */ 1342e6a796c3SToby Isaac static PetscErrorCode PetscDTJacobiMatrix_Internal(PetscInt nPoints, PetscReal a, PetscReal b, PetscReal *d, PetscReal *s) 1343e6a796c3SToby Isaac { 1344e6a796c3SToby Isaac PetscInt i; 1345e6a796c3SToby Isaac 1346e6a796c3SToby Isaac PetscFunctionBegin; 1347e6a796c3SToby Isaac for (i = 0; i < nPoints; i++) { 134894e21283SToby Isaac PetscReal A, B, C; 1349e6a796c3SToby Isaac 135094e21283SToby Isaac PetscDTJacobiRecurrence_Internal(i+1,a,b,A,B,C); 135194e21283SToby Isaac d[i] = -A / B; 135294e21283SToby Isaac if (i) s[i-1] *= C / B; 135394e21283SToby Isaac if (i < nPoints - 1) s[i] = 1. / B; 1354e6a796c3SToby Isaac } 1355e6a796c3SToby Isaac PetscFunctionReturn(0); 1356e6a796c3SToby Isaac } 1357e6a796c3SToby Isaac 1358e6a796c3SToby Isaac static PetscErrorCode PetscDTGaussJacobiQuadrature_GolubWelsch_Internal(PetscInt npoints, PetscReal a, PetscReal b, PetscReal *x, PetscReal *w) 1359e6a796c3SToby Isaac { 1360e6a796c3SToby Isaac PetscReal mu0; 1361e6a796c3SToby Isaac PetscReal ga, gb, gab; 1362e6a796c3SToby Isaac PetscInt i; 1363e6a796c3SToby Isaac PetscErrorCode ierr; 1364e6a796c3SToby Isaac 1365e6a796c3SToby Isaac PetscFunctionBegin; 1366e6a796c3SToby Isaac ierr = PetscCitationsRegister(GolubWelschCitation, &GolubWelschCite);CHKERRQ(ierr); 1367e6a796c3SToby Isaac 1368e6a796c3SToby Isaac #if defined(PETSC_HAVE_TGAMMA) 1369e6a796c3SToby Isaac ga = PetscTGamma(a + 1); 1370e6a796c3SToby Isaac gb = PetscTGamma(b + 1); 1371e6a796c3SToby Isaac gab = PetscTGamma(a + b + 2); 1372e6a796c3SToby Isaac #else 1373e6a796c3SToby Isaac { 1374e6a796c3SToby Isaac PetscInt ia, ib; 1375e6a796c3SToby Isaac 1376e6a796c3SToby Isaac ia = (PetscInt) a; 1377e6a796c3SToby Isaac ib = (PetscInt) b; 1378e6a796c3SToby Isaac if (ia == a && ib == b && ia + 1 > 0 && ib + 1 > 0 && ia + ib + 2 > 0) { /* All gamma(x) terms are (x-1)! terms */ 1379e6a796c3SToby Isaac ierr = PetscDTFactorial(ia, &ga);CHKERRQ(ierr); 1380e6a796c3SToby Isaac ierr = PetscDTFactorial(ib, &gb);CHKERRQ(ierr); 1381e6a796c3SToby Isaac ierr = PetscDTFactorial(ia + ib + 1, &gb);CHKERRQ(ierr); 1382e6a796c3SToby Isaac } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"tgamma() - math routine is unavailable."); 1383e6a796c3SToby Isaac } 1384e6a796c3SToby Isaac #endif 1385e6a796c3SToby Isaac mu0 = PetscPowReal(2.,a + b + 1.) * ga * gb / gab; 1386e6a796c3SToby Isaac 1387e6a796c3SToby Isaac #if defined(PETSCDTGAUSSIANQUADRATURE_EIG) 1388e6a796c3SToby Isaac { 1389e6a796c3SToby Isaac PetscReal *diag, *subdiag; 1390e6a796c3SToby Isaac PetscScalar *V; 1391e6a796c3SToby Isaac 1392e6a796c3SToby Isaac ierr = PetscMalloc2(npoints, &diag, npoints, &subdiag);CHKERRQ(ierr); 1393e6a796c3SToby Isaac ierr = PetscMalloc1(npoints*npoints, &V);CHKERRQ(ierr); 1394e6a796c3SToby Isaac ierr = PetscDTJacobiMatrix_Internal(npoints, a, b, diag, subdiag);CHKERRQ(ierr); 1395e6a796c3SToby Isaac for (i = 0; i < npoints - 1; i++) subdiag[i] = PetscSqrtReal(subdiag[i]); 1396e6a796c3SToby Isaac ierr = PetscDTSymmetricTridiagonalEigensolve(npoints, diag, subdiag, x, V);CHKERRQ(ierr); 139794e21283SToby Isaac for (i = 0; i < npoints; i++) w[i] = PetscSqr(PetscRealPart(V[i * npoints])) * mu0; 1398e6a796c3SToby Isaac ierr = PetscFree(V);CHKERRQ(ierr); 1399e6a796c3SToby Isaac ierr = PetscFree2(diag, subdiag);CHKERRQ(ierr); 1400e6a796c3SToby Isaac } 1401e6a796c3SToby Isaac #else 1402e6a796c3SToby Isaac SETERRQ(PETSC_COMM_SELF, PETSC_ERR_SUP_SYS, "A LAPACK symmetric tridiagonal eigensolver could not be found"); 1403e6a796c3SToby Isaac #endif 140494e21283SToby Isaac { /* As of March 2, 2020, The Sun Performance Library breaks the LAPACK contract for xstegr and xsteqr: the 140594e21283SToby Isaac eigenvalues are not guaranteed to be in ascending order. So we heave a passive aggressive sigh and check that 140694e21283SToby Isaac the eigenvalues are sorted */ 140794e21283SToby Isaac PetscBool sorted; 140894e21283SToby Isaac 140994e21283SToby Isaac ierr = PetscSortedReal(npoints, x, &sorted);CHKERRQ(ierr); 141094e21283SToby Isaac if (!sorted) { 141194e21283SToby Isaac PetscInt *order, i; 141294e21283SToby Isaac PetscReal *tmp; 141394e21283SToby Isaac 141494e21283SToby Isaac ierr = PetscMalloc2(npoints, &order, npoints, &tmp);CHKERRQ(ierr); 141594e21283SToby Isaac for (i = 0; i < npoints; i++) order[i] = i; 141694e21283SToby Isaac ierr = PetscSortRealWithPermutation(npoints, x, order);CHKERRQ(ierr); 141794e21283SToby Isaac ierr = PetscArraycpy(tmp, x, npoints);CHKERRQ(ierr); 141894e21283SToby Isaac for (i = 0; i < npoints; i++) x[i] = tmp[order[i]]; 141994e21283SToby Isaac ierr = PetscArraycpy(tmp, w, npoints);CHKERRQ(ierr); 142094e21283SToby Isaac for (i = 0; i < npoints; i++) w[i] = tmp[order[i]]; 142194e21283SToby Isaac ierr = PetscFree2(order, tmp);CHKERRQ(ierr); 142294e21283SToby Isaac } 142394e21283SToby Isaac } 1424e6a796c3SToby Isaac PetscFunctionReturn(0); 1425e6a796c3SToby Isaac } 1426e6a796c3SToby Isaac 1427e6a796c3SToby Isaac static PetscErrorCode PetscDTGaussJacobiQuadrature_Internal(PetscInt npoints,PetscReal alpha, PetscReal beta, PetscReal x[], PetscReal w[], PetscBool newton) 1428e6a796c3SToby Isaac { 1429e6a796c3SToby Isaac PetscErrorCode ierr; 1430e6a796c3SToby Isaac 1431e6a796c3SToby Isaac PetscFunctionBegin; 1432e6a796c3SToby Isaac if (npoints < 1) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Number of points must be positive"); 1433e6a796c3SToby Isaac /* If asking for a 1D Lobatto point, just return the non-Lobatto 1D point */ 1434e6a796c3SToby Isaac if (alpha <= -1.) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"alpha must be > -1."); 1435e6a796c3SToby Isaac if (beta <= -1.) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"beta must be > -1."); 1436e6a796c3SToby Isaac 1437e6a796c3SToby Isaac if (newton) { 1438e6a796c3SToby Isaac ierr = PetscDTGaussJacobiQuadrature_Newton_Internal(npoints, alpha, beta, x, w);CHKERRQ(ierr); 1439e6a796c3SToby Isaac } else { 1440e6a796c3SToby Isaac ierr = PetscDTGaussJacobiQuadrature_GolubWelsch_Internal(npoints, alpha, beta, x, w);CHKERRQ(ierr); 1441e6a796c3SToby Isaac } 1442e6a796c3SToby Isaac if (alpha == beta) { /* symmetrize */ 1443e6a796c3SToby Isaac PetscInt i; 1444e6a796c3SToby Isaac for (i = 0; i < (npoints + 1) / 2; i++) { 1445e6a796c3SToby Isaac PetscInt j = npoints - 1 - i; 1446e6a796c3SToby Isaac PetscReal xi = x[i]; 1447e6a796c3SToby Isaac PetscReal xj = x[j]; 1448e6a796c3SToby Isaac PetscReal wi = w[i]; 1449e6a796c3SToby Isaac PetscReal wj = w[j]; 1450e6a796c3SToby Isaac 1451e6a796c3SToby Isaac x[i] = (xi - xj) / 2.; 1452e6a796c3SToby Isaac x[j] = (xj - xi) / 2.; 1453e6a796c3SToby Isaac w[i] = w[j] = (wi + wj) / 2.; 1454e6a796c3SToby Isaac } 1455e6a796c3SToby Isaac } 1456e6a796c3SToby Isaac PetscFunctionReturn(0); 1457e6a796c3SToby Isaac } 1458e6a796c3SToby Isaac 145994e21283SToby Isaac /*@ 146094e21283SToby Isaac PetscDTGaussJacobiQuadrature - quadrature for the interval [a, b] with the weight function 146194e21283SToby Isaac $(x-a)^\alpha (x-b)^\beta$. 146294e21283SToby Isaac 146394e21283SToby Isaac Not collective 146494e21283SToby Isaac 146594e21283SToby Isaac Input Parameters: 146694e21283SToby Isaac + npoints - the number of points in the quadrature rule 146794e21283SToby Isaac . a - the left endpoint of the interval 146894e21283SToby Isaac . b - the right endpoint of the interval 146994e21283SToby Isaac . alpha - the left exponent 147094e21283SToby Isaac - beta - the right exponent 147194e21283SToby Isaac 147294e21283SToby Isaac Output Parameters: 147394e21283SToby Isaac + x - array of length npoints, the locations of the quadrature points 147494e21283SToby Isaac - w - array of length npoints, the weights of the quadrature points 147594e21283SToby Isaac 147694e21283SToby Isaac Level: intermediate 147794e21283SToby Isaac 147894e21283SToby Isaac Note: this quadrature rule is exact for polynomials up to degree 2*npoints - 1. 147994e21283SToby Isaac @*/ 148094e21283SToby Isaac PetscErrorCode PetscDTGaussJacobiQuadrature(PetscInt npoints,PetscReal a, PetscReal b, PetscReal alpha, PetscReal beta, PetscReal x[], PetscReal w[]) 1481e6a796c3SToby Isaac { 148294e21283SToby Isaac PetscInt i; 1483e6a796c3SToby Isaac PetscErrorCode ierr; 1484e6a796c3SToby Isaac 1485e6a796c3SToby Isaac PetscFunctionBegin; 148694e21283SToby Isaac ierr = PetscDTGaussJacobiQuadrature_Internal(npoints, alpha, beta, x, w, PetscDTGaussQuadratureNewton_Internal);CHKERRQ(ierr); 148794e21283SToby Isaac if (a != -1. || b != 1.) { /* shift */ 148894e21283SToby Isaac for (i = 0; i < npoints; i++) { 148994e21283SToby Isaac x[i] = (x[i] + 1.) * ((b - a) / 2.) + a; 149094e21283SToby Isaac w[i] *= (b - a) / 2.; 149194e21283SToby Isaac } 149294e21283SToby Isaac } 1493e6a796c3SToby Isaac PetscFunctionReturn(0); 1494e6a796c3SToby Isaac } 1495e6a796c3SToby Isaac 1496e6a796c3SToby Isaac static PetscErrorCode PetscDTGaussLobattoJacobiQuadrature_Internal(PetscInt npoints,PetscReal alpha, PetscReal beta, PetscReal x[], PetscReal w[], PetscBool newton) 1497e6a796c3SToby Isaac { 1498e6a796c3SToby Isaac PetscInt i; 1499e6a796c3SToby Isaac PetscErrorCode ierr; 1500e6a796c3SToby Isaac 1501e6a796c3SToby Isaac PetscFunctionBegin; 1502e6a796c3SToby Isaac if (npoints < 2) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Number of points must be positive"); 1503e6a796c3SToby Isaac /* If asking for a 1D Lobatto point, just return the non-Lobatto 1D point */ 1504e6a796c3SToby Isaac if (alpha <= -1.) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"alpha must be > -1."); 1505e6a796c3SToby Isaac if (beta <= -1.) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"beta must be > -1."); 1506e6a796c3SToby Isaac 1507e6a796c3SToby Isaac x[0] = -1.; 1508e6a796c3SToby Isaac x[npoints-1] = 1.; 150994e21283SToby Isaac if (npoints > 2) { 151094e21283SToby Isaac ierr = PetscDTGaussJacobiQuadrature_Internal(npoints-2, alpha+1., beta+1., &x[1], &w[1], newton);CHKERRQ(ierr); 151194e21283SToby Isaac } 1512e6a796c3SToby Isaac for (i = 1; i < npoints - 1; i++) { 1513e6a796c3SToby Isaac w[i] /= (1. - x[i]*x[i]); 1514e6a796c3SToby Isaac } 1515e6a796c3SToby Isaac ierr = PetscDTGaussLobattoJacobiEndweights_Internal(npoints, alpha, beta, &w[0], &w[npoints-1]);CHKERRQ(ierr); 1516e6a796c3SToby Isaac PetscFunctionReturn(0); 1517e6a796c3SToby Isaac } 1518e6a796c3SToby Isaac 151937045ce4SJed Brown /*@ 152094e21283SToby Isaac PetscDTGaussLobattoJacobiQuadrature - quadrature for the interval [a, b] with the weight function 152194e21283SToby Isaac $(x-a)^\alpha (x-b)^\beta$, with endpoints a and b included as quadrature points. 152294e21283SToby Isaac 152394e21283SToby Isaac Not collective 152494e21283SToby Isaac 152594e21283SToby Isaac Input Parameters: 152694e21283SToby Isaac + npoints - the number of points in the quadrature rule 152794e21283SToby Isaac . a - the left endpoint of the interval 152894e21283SToby Isaac . b - the right endpoint of the interval 152994e21283SToby Isaac . alpha - the left exponent 153094e21283SToby Isaac - beta - the right exponent 153194e21283SToby Isaac 153294e21283SToby Isaac Output Parameters: 153394e21283SToby Isaac + x - array of length npoints, the locations of the quadrature points 153494e21283SToby Isaac - w - array of length npoints, the weights of the quadrature points 153594e21283SToby Isaac 153694e21283SToby Isaac Level: intermediate 153794e21283SToby Isaac 153894e21283SToby Isaac Note: this quadrature rule is exact for polynomials up to degree 2*npoints - 3. 153994e21283SToby Isaac @*/ 154094e21283SToby Isaac PetscErrorCode PetscDTGaussLobattoJacobiQuadrature(PetscInt npoints,PetscReal a, PetscReal b, PetscReal alpha, PetscReal beta, PetscReal x[], PetscReal w[]) 154194e21283SToby Isaac { 154294e21283SToby Isaac PetscInt i; 154394e21283SToby Isaac PetscErrorCode ierr; 154494e21283SToby Isaac 154594e21283SToby Isaac PetscFunctionBegin; 154694e21283SToby Isaac ierr = PetscDTGaussLobattoJacobiQuadrature_Internal(npoints, alpha, beta, x, w, PetscDTGaussQuadratureNewton_Internal);CHKERRQ(ierr); 154794e21283SToby Isaac if (a != -1. || b != 1.) { /* shift */ 154894e21283SToby Isaac for (i = 0; i < npoints; i++) { 154994e21283SToby Isaac x[i] = (x[i] + 1.) * ((b - a) / 2.) + a; 155094e21283SToby Isaac w[i] *= (b - a) / 2.; 155194e21283SToby Isaac } 155294e21283SToby Isaac } 155394e21283SToby Isaac PetscFunctionReturn(0); 155494e21283SToby Isaac } 155594e21283SToby Isaac 155694e21283SToby Isaac /*@ 1557e6a796c3SToby Isaac PetscDTGaussQuadrature - create Gauss-Legendre quadrature 155837045ce4SJed Brown 155937045ce4SJed Brown Not Collective 156037045ce4SJed Brown 15614165533cSJose E. Roman Input Parameters: 156237045ce4SJed Brown + npoints - number of points 156337045ce4SJed Brown . a - left end of interval (often-1) 156437045ce4SJed Brown - b - right end of interval (often +1) 156537045ce4SJed Brown 15664165533cSJose E. Roman Output Parameters: 156737045ce4SJed Brown + x - quadrature points 156837045ce4SJed Brown - w - quadrature weights 156937045ce4SJed Brown 157037045ce4SJed Brown Level: intermediate 157137045ce4SJed Brown 157237045ce4SJed Brown References: 157396a0c994SBarry Smith . 1. - Golub and Welsch, Calculation of Quadrature Rules, Math. Comp. 23(106), 1969. 157437045ce4SJed Brown 157537045ce4SJed Brown .seealso: PetscDTLegendreEval() 157637045ce4SJed Brown @*/ 157737045ce4SJed Brown PetscErrorCode PetscDTGaussQuadrature(PetscInt npoints,PetscReal a,PetscReal b,PetscReal *x,PetscReal *w) 157837045ce4SJed Brown { 157937045ce4SJed Brown PetscInt i; 1580e6a796c3SToby Isaac PetscErrorCode ierr; 158137045ce4SJed Brown 158237045ce4SJed Brown PetscFunctionBegin; 158394e21283SToby Isaac ierr = PetscDTGaussJacobiQuadrature_Internal(npoints, 0., 0., x, w, PetscDTGaussQuadratureNewton_Internal);CHKERRQ(ierr); 158494e21283SToby Isaac if (a != -1. || b != 1.) { /* shift */ 158537045ce4SJed Brown for (i = 0; i < npoints; i++) { 1586e6a796c3SToby Isaac x[i] = (x[i] + 1.) * ((b - a) / 2.) + a; 1587e6a796c3SToby Isaac w[i] *= (b - a) / 2.; 158837045ce4SJed Brown } 158937045ce4SJed Brown } 159037045ce4SJed Brown PetscFunctionReturn(0); 159137045ce4SJed Brown } 1592194825f6SJed Brown 15938272889dSSatish Balay /*@C 15948272889dSSatish Balay PetscDTGaussLobattoLegendreQuadrature - creates a set of the locations and weights of the Gauss-Lobatto-Legendre 15958272889dSSatish Balay nodes of a given size on the domain [-1,1] 15968272889dSSatish Balay 15978272889dSSatish Balay Not Collective 15988272889dSSatish Balay 1599d8d19677SJose E. Roman Input Parameters: 16008272889dSSatish Balay + n - number of grid nodes 1601f2e8fe4dShannah_mairs - type - PETSCGAUSSLOBATTOLEGENDRE_VIA_LINEAR_ALGEBRA or PETSCGAUSSLOBATTOLEGENDRE_VIA_NEWTON 16028272889dSSatish Balay 16034165533cSJose E. Roman Output Parameters: 16048272889dSSatish Balay + x - quadrature points 16058272889dSSatish Balay - w - quadrature weights 16068272889dSSatish Balay 16078272889dSSatish Balay Notes: 16088272889dSSatish Balay For n > 30 the Newton approach computes duplicate (incorrect) values for some nodes because the initial guess is apparently not 16098272889dSSatish Balay close enough to the desired solution 16108272889dSSatish Balay 16118272889dSSatish Balay These are useful for implementing spectral methods based on Gauss-Lobatto-Legendre (GLL) nodes 16128272889dSSatish Balay 1613a8d69d7bSBarry Smith See https://epubs.siam.org/doi/abs/10.1137/110855442 https://epubs.siam.org/doi/abs/10.1137/120889873 for better ways to compute GLL nodes 16148272889dSSatish Balay 16158272889dSSatish Balay Level: intermediate 16168272889dSSatish Balay 16178272889dSSatish Balay .seealso: PetscDTGaussQuadrature() 16188272889dSSatish Balay 16198272889dSSatish Balay @*/ 1620916e780bShannah_mairs PetscErrorCode PetscDTGaussLobattoLegendreQuadrature(PetscInt npoints,PetscGaussLobattoLegendreCreateType type,PetscReal *x,PetscReal *w) 16218272889dSSatish Balay { 1622e6a796c3SToby Isaac PetscBool newton; 16238272889dSSatish Balay PetscErrorCode ierr; 16248272889dSSatish Balay 16258272889dSSatish Balay PetscFunctionBegin; 16268272889dSSatish Balay if (npoints < 2) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Must provide at least 2 grid points per element"); 162794e21283SToby Isaac newton = (PetscBool) (type == PETSCGAUSSLOBATTOLEGENDRE_VIA_NEWTON); 1628e6a796c3SToby Isaac ierr = PetscDTGaussLobattoJacobiQuadrature_Internal(npoints, 0., 0., x, w, newton);CHKERRQ(ierr); 16298272889dSSatish Balay PetscFunctionReturn(0); 16308272889dSSatish Balay } 16318272889dSSatish Balay 1632744bafbcSMatthew G. Knepley /*@ 1633744bafbcSMatthew G. Knepley PetscDTGaussTensorQuadrature - creates a tensor-product Gauss quadrature 1634744bafbcSMatthew G. Knepley 1635744bafbcSMatthew G. Knepley Not Collective 1636744bafbcSMatthew G. Knepley 16374165533cSJose E. Roman Input Parameters: 1638744bafbcSMatthew G. Knepley + dim - The spatial dimension 1639a6b92713SMatthew G. Knepley . Nc - The number of components 1640744bafbcSMatthew G. Knepley . npoints - number of points in one dimension 1641744bafbcSMatthew G. Knepley . a - left end of interval (often-1) 1642744bafbcSMatthew G. Knepley - b - right end of interval (often +1) 1643744bafbcSMatthew G. Knepley 16444165533cSJose E. Roman Output Parameter: 1645744bafbcSMatthew G. Knepley . q - A PetscQuadrature object 1646744bafbcSMatthew G. Knepley 1647744bafbcSMatthew G. Knepley Level: intermediate 1648744bafbcSMatthew G. Knepley 1649744bafbcSMatthew G. Knepley .seealso: PetscDTGaussQuadrature(), PetscDTLegendreEval() 1650744bafbcSMatthew G. Knepley @*/ 1651a6b92713SMatthew G. Knepley PetscErrorCode PetscDTGaussTensorQuadrature(PetscInt dim, PetscInt Nc, PetscInt npoints, PetscReal a, PetscReal b, PetscQuadrature *q) 1652744bafbcSMatthew G. Knepley { 1653a6b92713SMatthew G. Knepley PetscInt totpoints = dim > 1 ? dim > 2 ? npoints*PetscSqr(npoints) : PetscSqr(npoints) : npoints, i, j, k, c; 1654744bafbcSMatthew G. Knepley PetscReal *x, *w, *xw, *ww; 1655744bafbcSMatthew G. Knepley PetscErrorCode ierr; 1656744bafbcSMatthew G. Knepley 1657744bafbcSMatthew G. Knepley PetscFunctionBegin; 1658744bafbcSMatthew G. Knepley ierr = PetscMalloc1(totpoints*dim,&x);CHKERRQ(ierr); 1659a6b92713SMatthew G. Knepley ierr = PetscMalloc1(totpoints*Nc,&w);CHKERRQ(ierr); 1660744bafbcSMatthew G. Knepley /* Set up the Golub-Welsch system */ 1661744bafbcSMatthew G. Knepley switch (dim) { 1662744bafbcSMatthew G. Knepley case 0: 1663744bafbcSMatthew G. Knepley ierr = PetscFree(x);CHKERRQ(ierr); 1664744bafbcSMatthew G. Knepley ierr = PetscFree(w);CHKERRQ(ierr); 1665744bafbcSMatthew G. Knepley ierr = PetscMalloc1(1, &x);CHKERRQ(ierr); 1666a6b92713SMatthew G. Knepley ierr = PetscMalloc1(Nc, &w);CHKERRQ(ierr); 1667744bafbcSMatthew G. Knepley x[0] = 0.0; 1668a6b92713SMatthew G. Knepley for (c = 0; c < Nc; ++c) w[c] = 1.0; 1669744bafbcSMatthew G. Knepley break; 1670744bafbcSMatthew G. Knepley case 1: 1671a6b92713SMatthew G. Knepley ierr = PetscMalloc1(npoints,&ww);CHKERRQ(ierr); 1672a6b92713SMatthew G. Knepley ierr = PetscDTGaussQuadrature(npoints, a, b, x, ww);CHKERRQ(ierr); 1673a6b92713SMatthew G. Knepley for (i = 0; i < npoints; ++i) for (c = 0; c < Nc; ++c) w[i*Nc+c] = ww[i]; 1674a6b92713SMatthew G. Knepley ierr = PetscFree(ww);CHKERRQ(ierr); 1675744bafbcSMatthew G. Knepley break; 1676744bafbcSMatthew G. Knepley case 2: 1677744bafbcSMatthew G. Knepley ierr = PetscMalloc2(npoints,&xw,npoints,&ww);CHKERRQ(ierr); 1678744bafbcSMatthew G. Knepley ierr = PetscDTGaussQuadrature(npoints, a, b, xw, ww);CHKERRQ(ierr); 1679744bafbcSMatthew G. Knepley for (i = 0; i < npoints; ++i) { 1680744bafbcSMatthew G. Knepley for (j = 0; j < npoints; ++j) { 1681744bafbcSMatthew G. Knepley x[(i*npoints+j)*dim+0] = xw[i]; 1682744bafbcSMatthew G. Knepley x[(i*npoints+j)*dim+1] = xw[j]; 1683a6b92713SMatthew G. Knepley for (c = 0; c < Nc; ++c) w[(i*npoints+j)*Nc+c] = ww[i] * ww[j]; 1684744bafbcSMatthew G. Knepley } 1685744bafbcSMatthew G. Knepley } 1686744bafbcSMatthew G. Knepley ierr = PetscFree2(xw,ww);CHKERRQ(ierr); 1687744bafbcSMatthew G. Knepley break; 1688744bafbcSMatthew G. Knepley case 3: 1689744bafbcSMatthew G. Knepley ierr = PetscMalloc2(npoints,&xw,npoints,&ww);CHKERRQ(ierr); 1690744bafbcSMatthew G. Knepley ierr = PetscDTGaussQuadrature(npoints, a, b, xw, ww);CHKERRQ(ierr); 1691744bafbcSMatthew G. Knepley for (i = 0; i < npoints; ++i) { 1692744bafbcSMatthew G. Knepley for (j = 0; j < npoints; ++j) { 1693744bafbcSMatthew G. Knepley for (k = 0; k < npoints; ++k) { 1694744bafbcSMatthew G. Knepley x[((i*npoints+j)*npoints+k)*dim+0] = xw[i]; 1695744bafbcSMatthew G. Knepley x[((i*npoints+j)*npoints+k)*dim+1] = xw[j]; 1696744bafbcSMatthew G. Knepley x[((i*npoints+j)*npoints+k)*dim+2] = xw[k]; 1697a6b92713SMatthew G. Knepley for (c = 0; c < Nc; ++c) w[((i*npoints+j)*npoints+k)*Nc+c] = ww[i] * ww[j] * ww[k]; 1698744bafbcSMatthew G. Knepley } 1699744bafbcSMatthew G. Knepley } 1700744bafbcSMatthew G. Knepley } 1701744bafbcSMatthew G. Knepley ierr = PetscFree2(xw,ww);CHKERRQ(ierr); 1702744bafbcSMatthew G. Knepley break; 1703744bafbcSMatthew G. Knepley default: 1704744bafbcSMatthew G. Knepley SETERRQ1(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Cannot construct quadrature rule for dimension %d", dim); 1705744bafbcSMatthew G. Knepley } 1706744bafbcSMatthew G. Knepley ierr = PetscQuadratureCreate(PETSC_COMM_SELF, q);CHKERRQ(ierr); 17072f5fb066SToby Isaac ierr = PetscQuadratureSetOrder(*q, 2*npoints-1);CHKERRQ(ierr); 1708a6b92713SMatthew G. Knepley ierr = PetscQuadratureSetData(*q, dim, Nc, totpoints, x, w);CHKERRQ(ierr); 1709d9bac1caSLisandro Dalcin ierr = PetscObjectChangeTypeName((PetscObject)*q,"GaussTensor");CHKERRQ(ierr); 1710744bafbcSMatthew G. Knepley PetscFunctionReturn(0); 1711744bafbcSMatthew G. Knepley } 1712744bafbcSMatthew G. Knepley 1713f5f57ec0SBarry Smith /*@ 1714e6a796c3SToby Isaac PetscDTStroudConicalQuadrature - create Stroud conical quadrature for a simplex 1715494e7359SMatthew G. Knepley 1716494e7359SMatthew G. Knepley Not Collective 1717494e7359SMatthew G. Knepley 17184165533cSJose E. Roman Input Parameters: 1719494e7359SMatthew G. Knepley + dim - The simplex dimension 1720a6b92713SMatthew G. Knepley . Nc - The number of components 1721dcce0ee2SMatthew G. Knepley . npoints - The number of points in one dimension 1722494e7359SMatthew G. Knepley . a - left end of interval (often-1) 1723494e7359SMatthew G. Knepley - b - right end of interval (often +1) 1724494e7359SMatthew G. Knepley 17254165533cSJose E. Roman Output Parameter: 1726552aa4f7SMatthew G. Knepley . q - A PetscQuadrature object 1727494e7359SMatthew G. Knepley 1728494e7359SMatthew G. Knepley Level: intermediate 1729494e7359SMatthew G. Knepley 1730494e7359SMatthew G. Knepley References: 173196a0c994SBarry Smith . 1. - Karniadakis and Sherwin. FIAT 1732494e7359SMatthew G. Knepley 1733e6a796c3SToby Isaac Note: For dim == 1, this is Gauss-Legendre quadrature 1734e6a796c3SToby Isaac 1735744bafbcSMatthew G. Knepley .seealso: PetscDTGaussTensorQuadrature(), PetscDTGaussQuadrature() 1736494e7359SMatthew G. Knepley @*/ 1737e6a796c3SToby Isaac PetscErrorCode PetscDTStroudConicalQuadrature(PetscInt dim, PetscInt Nc, PetscInt npoints, PetscReal a, PetscReal b, PetscQuadrature *q) 1738494e7359SMatthew G. Knepley { 1739fbdc3dfeSToby Isaac PetscInt totprev, totrem; 1740fbdc3dfeSToby Isaac PetscInt totpoints; 1741fbdc3dfeSToby Isaac PetscReal *p1, *w1; 1742fbdc3dfeSToby Isaac PetscReal *x, *w; 1743fbdc3dfeSToby Isaac PetscInt i, j, k, l, m, pt, c; 1744fbdc3dfeSToby Isaac PetscErrorCode ierr; 1745494e7359SMatthew G. Knepley 1746494e7359SMatthew G. Knepley PetscFunctionBegin; 1747494e7359SMatthew G. Knepley if ((a != -1.0) || (b != 1.0)) SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Must use default internal right now"); 1748fbdc3dfeSToby Isaac totpoints = 1; 1749fbdc3dfeSToby Isaac for (i = 0, totpoints = 1; i < dim; i++) totpoints *= npoints; 1750dcce0ee2SMatthew G. Knepley ierr = PetscMalloc1(totpoints*dim, &x);CHKERRQ(ierr); 1751dcce0ee2SMatthew G. Knepley ierr = PetscMalloc1(totpoints*Nc, &w);CHKERRQ(ierr); 1752fbdc3dfeSToby Isaac ierr = PetscMalloc2(npoints, &p1, npoints, &w1);CHKERRQ(ierr); 1753fbdc3dfeSToby Isaac for (i = 0; i < totpoints*Nc; i++) w[i] = 1.; 1754fbdc3dfeSToby Isaac for (i = 0, totprev = 1, totrem = totpoints / npoints; i < dim; i++) { 1755fbdc3dfeSToby Isaac PetscReal mul; 1756fbdc3dfeSToby Isaac 1757fbdc3dfeSToby Isaac mul = PetscPowReal(2.,-i); 1758fbdc3dfeSToby Isaac ierr = PetscDTGaussJacobiQuadrature(npoints, -1., 1., i, 0.0, p1, w1);CHKERRQ(ierr); 1759fbdc3dfeSToby Isaac for (pt = 0, l = 0; l < totprev; l++) { 1760fbdc3dfeSToby Isaac for (j = 0; j < npoints; j++) { 1761fbdc3dfeSToby Isaac for (m = 0; m < totrem; m++, pt++) { 1762fbdc3dfeSToby Isaac for (k = 0; k < i; k++) x[pt*dim+k] = (x[pt*dim+k]+1.)*(1.-p1[j])*0.5 - 1.; 1763fbdc3dfeSToby Isaac x[pt * dim + i] = p1[j]; 1764fbdc3dfeSToby Isaac for (c = 0; c < Nc; c++) w[pt*Nc + c] *= mul * w1[j]; 1765494e7359SMatthew G. Knepley } 1766494e7359SMatthew G. Knepley } 1767494e7359SMatthew G. Knepley } 1768fbdc3dfeSToby Isaac totprev *= npoints; 1769fbdc3dfeSToby Isaac totrem /= npoints; 1770494e7359SMatthew G. Knepley } 1771fbdc3dfeSToby Isaac ierr = PetscFree2(p1, w1);CHKERRQ(ierr); 177221454ff5SMatthew G. Knepley ierr = PetscQuadratureCreate(PETSC_COMM_SELF, q);CHKERRQ(ierr); 17732f5fb066SToby Isaac ierr = PetscQuadratureSetOrder(*q, 2*npoints-1);CHKERRQ(ierr); 1774dcce0ee2SMatthew G. Knepley ierr = PetscQuadratureSetData(*q, dim, Nc, totpoints, x, w);CHKERRQ(ierr); 1775fbdc3dfeSToby Isaac ierr = PetscObjectChangeTypeName((PetscObject)*q,"StroudConical");CHKERRQ(ierr); 1776494e7359SMatthew G. Knepley PetscFunctionReturn(0); 1777494e7359SMatthew G. Knepley } 1778494e7359SMatthew G. Knepley 1779f5f57ec0SBarry Smith /*@ 1780b3c0f97bSTom Klotz PetscDTTanhSinhTensorQuadrature - create tanh-sinh quadrature for a tensor product cell 1781b3c0f97bSTom Klotz 1782b3c0f97bSTom Klotz Not Collective 1783b3c0f97bSTom Klotz 17844165533cSJose E. Roman Input Parameters: 1785b3c0f97bSTom Klotz + dim - The cell dimension 1786b3c0f97bSTom Klotz . level - The number of points in one dimension, 2^l 1787b3c0f97bSTom Klotz . a - left end of interval (often-1) 1788b3c0f97bSTom Klotz - b - right end of interval (often +1) 1789b3c0f97bSTom Klotz 17904165533cSJose E. Roman Output Parameter: 1791b3c0f97bSTom Klotz . q - A PetscQuadrature object 1792b3c0f97bSTom Klotz 1793b3c0f97bSTom Klotz Level: intermediate 1794b3c0f97bSTom Klotz 1795b3c0f97bSTom Klotz .seealso: PetscDTGaussTensorQuadrature() 1796b3c0f97bSTom Klotz @*/ 1797b3c0f97bSTom Klotz PetscErrorCode PetscDTTanhSinhTensorQuadrature(PetscInt dim, PetscInt level, PetscReal a, PetscReal b, PetscQuadrature *q) 1798b3c0f97bSTom Klotz { 1799b3c0f97bSTom Klotz const PetscInt p = 16; /* Digits of precision in the evaluation */ 1800b3c0f97bSTom Klotz const PetscReal alpha = (b-a)/2.; /* Half-width of the integration interval */ 1801b3c0f97bSTom Klotz const PetscReal beta = (b+a)/2.; /* Center of the integration interval */ 1802b3c0f97bSTom Klotz const PetscReal h = PetscPowReal(2.0, -level); /* Step size, length between x_k */ 1803d84b4d08SMatthew G. Knepley PetscReal xk; /* Quadrature point x_k on reference domain [-1, 1] */ 1804b3c0f97bSTom Klotz PetscReal wk = 0.5*PETSC_PI; /* Quadrature weight at x_k */ 1805b3c0f97bSTom Klotz PetscReal *x, *w; 1806b3c0f97bSTom Klotz PetscInt K, k, npoints; 1807b3c0f97bSTom Klotz PetscErrorCode ierr; 1808b3c0f97bSTom Klotz 1809b3c0f97bSTom Klotz PetscFunctionBegin; 1810b3c0f97bSTom Klotz if (dim > 1) SETERRQ1(PETSC_COMM_SELF, PETSC_ERR_SUP, "Dimension %d not yet implemented", dim); 1811b3c0f97bSTom Klotz if (!level) SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Must give a number of significant digits"); 1812b3c0f97bSTom Klotz /* Find K such that the weights are < 32 digits of precision */ 1813b3c0f97bSTom Klotz for (K = 1; PetscAbsReal(PetscLog10Real(wk)) < 2*p; ++K) { 18149add2064SThomas Klotz wk = 0.5*h*PETSC_PI*PetscCoshReal(K*h)/PetscSqr(PetscCoshReal(0.5*PETSC_PI*PetscSinhReal(K*h))); 1815b3c0f97bSTom Klotz } 1816b3c0f97bSTom Klotz ierr = PetscQuadratureCreate(PETSC_COMM_SELF, q);CHKERRQ(ierr); 1817b3c0f97bSTom Klotz ierr = PetscQuadratureSetOrder(*q, 2*K+1);CHKERRQ(ierr); 1818b3c0f97bSTom Klotz npoints = 2*K-1; 1819b3c0f97bSTom Klotz ierr = PetscMalloc1(npoints*dim, &x);CHKERRQ(ierr); 1820b3c0f97bSTom Klotz ierr = PetscMalloc1(npoints, &w);CHKERRQ(ierr); 1821b3c0f97bSTom Klotz /* Center term */ 1822b3c0f97bSTom Klotz x[0] = beta; 1823b3c0f97bSTom Klotz w[0] = 0.5*alpha*PETSC_PI; 1824b3c0f97bSTom Klotz for (k = 1; k < K; ++k) { 18259add2064SThomas Klotz wk = 0.5*alpha*h*PETSC_PI*PetscCoshReal(k*h)/PetscSqr(PetscCoshReal(0.5*PETSC_PI*PetscSinhReal(k*h))); 18261118d4bcSLisandro Dalcin xk = PetscTanhReal(0.5*PETSC_PI*PetscSinhReal(k*h)); 1827b3c0f97bSTom Klotz x[2*k-1] = -alpha*xk+beta; 1828b3c0f97bSTom Klotz w[2*k-1] = wk; 1829b3c0f97bSTom Klotz x[2*k+0] = alpha*xk+beta; 1830b3c0f97bSTom Klotz w[2*k+0] = wk; 1831b3c0f97bSTom Klotz } 1832a6b92713SMatthew G. Knepley ierr = PetscQuadratureSetData(*q, dim, 1, npoints, x, w);CHKERRQ(ierr); 1833b3c0f97bSTom Klotz PetscFunctionReturn(0); 1834b3c0f97bSTom Klotz } 1835b3c0f97bSTom Klotz 1836b3c0f97bSTom Klotz PetscErrorCode PetscDTTanhSinhIntegrate(void (*func)(PetscReal, PetscReal *), PetscReal a, PetscReal b, PetscInt digits, PetscReal *sol) 1837b3c0f97bSTom Klotz { 1838b3c0f97bSTom Klotz const PetscInt p = 16; /* Digits of precision in the evaluation */ 1839b3c0f97bSTom Klotz const PetscReal alpha = (b-a)/2.; /* Half-width of the integration interval */ 1840b3c0f97bSTom Klotz const PetscReal beta = (b+a)/2.; /* Center of the integration interval */ 1841b3c0f97bSTom Klotz PetscReal h = 1.0; /* Step size, length between x_k */ 1842b3c0f97bSTom Klotz PetscInt l = 0; /* Level of refinement, h = 2^{-l} */ 1843b3c0f97bSTom Klotz PetscReal osum = 0.0; /* Integral on last level */ 1844b3c0f97bSTom Klotz PetscReal psum = 0.0; /* Integral on the level before the last level */ 1845b3c0f97bSTom Klotz PetscReal sum; /* Integral on current level */ 1846446c295cSMatthew G. Knepley PetscReal yk; /* Quadrature point 1 - x_k on reference domain [-1, 1] */ 1847b3c0f97bSTom Klotz PetscReal lx, rx; /* Quadrature points to the left and right of 0 on the real domain [a, b] */ 1848b3c0f97bSTom Klotz PetscReal wk; /* Quadrature weight at x_k */ 1849b3c0f97bSTom Klotz PetscReal lval, rval; /* Terms in the quadature sum to the left and right of 0 */ 1850b3c0f97bSTom Klotz PetscInt d; /* Digits of precision in the integral */ 1851b3c0f97bSTom Klotz 1852b3c0f97bSTom Klotz PetscFunctionBegin; 1853b3c0f97bSTom Klotz if (digits <= 0) SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Must give a positive number of significant digits"); 1854b3c0f97bSTom Klotz /* Center term */ 1855b3c0f97bSTom Klotz func(beta, &lval); 1856b3c0f97bSTom Klotz sum = 0.5*alpha*PETSC_PI*lval; 1857b3c0f97bSTom Klotz /* */ 1858b3c0f97bSTom Klotz do { 1859b3c0f97bSTom Klotz PetscReal lterm, rterm, maxTerm = 0.0, d1, d2, d3, d4; 1860b3c0f97bSTom Klotz PetscInt k = 1; 1861b3c0f97bSTom Klotz 1862b3c0f97bSTom Klotz ++l; 1863b3c0f97bSTom Klotz /* PetscPrintf(PETSC_COMM_SELF, "LEVEL %D sum: %15.15f\n", l, sum); */ 1864b3c0f97bSTom Klotz /* At each level of refinement, h --> h/2 and sum --> sum/2 */ 1865b3c0f97bSTom Klotz psum = osum; 1866b3c0f97bSTom Klotz osum = sum; 1867b3c0f97bSTom Klotz h *= 0.5; 1868b3c0f97bSTom Klotz sum *= 0.5; 1869b3c0f97bSTom Klotz do { 18709add2064SThomas Klotz wk = 0.5*h*PETSC_PI*PetscCoshReal(k*h)/PetscSqr(PetscCoshReal(0.5*PETSC_PI*PetscSinhReal(k*h))); 1871446c295cSMatthew G. Knepley yk = 1.0/(PetscExpReal(0.5*PETSC_PI*PetscSinhReal(k*h)) * PetscCoshReal(0.5*PETSC_PI*PetscSinhReal(k*h))); 1872446c295cSMatthew G. Knepley lx = -alpha*(1.0 - yk)+beta; 1873446c295cSMatthew G. Knepley rx = alpha*(1.0 - yk)+beta; 1874b3c0f97bSTom Klotz func(lx, &lval); 1875b3c0f97bSTom Klotz func(rx, &rval); 1876b3c0f97bSTom Klotz lterm = alpha*wk*lval; 1877b3c0f97bSTom Klotz maxTerm = PetscMax(PetscAbsReal(lterm), maxTerm); 1878b3c0f97bSTom Klotz sum += lterm; 1879b3c0f97bSTom Klotz rterm = alpha*wk*rval; 1880b3c0f97bSTom Klotz maxTerm = PetscMax(PetscAbsReal(rterm), maxTerm); 1881b3c0f97bSTom Klotz sum += rterm; 1882b3c0f97bSTom Klotz ++k; 1883b3c0f97bSTom Klotz /* Only need to evaluate every other point on refined levels */ 1884b3c0f97bSTom Klotz if (l != 1) ++k; 18859add2064SThomas Klotz } while (PetscAbsReal(PetscLog10Real(wk)) < p); /* Only need to evaluate sum until weights are < 32 digits of precision */ 1886b3c0f97bSTom Klotz 1887b3c0f97bSTom Klotz d1 = PetscLog10Real(PetscAbsReal(sum - osum)); 1888b3c0f97bSTom Klotz d2 = PetscLog10Real(PetscAbsReal(sum - psum)); 1889b3c0f97bSTom Klotz d3 = PetscLog10Real(maxTerm) - p; 189009d48545SBarry Smith if (PetscMax(PetscAbsReal(lterm), PetscAbsReal(rterm)) == 0.0) d4 = 0.0; 189109d48545SBarry Smith else d4 = PetscLog10Real(PetscMax(PetscAbsReal(lterm), PetscAbsReal(rterm))); 1892b3c0f97bSTom Klotz d = PetscAbsInt(PetscMin(0, PetscMax(PetscMax(PetscMax(PetscSqr(d1)/d2, 2*d1), d3), d4))); 18939add2064SThomas Klotz } while (d < digits && l < 12); 1894b3c0f97bSTom Klotz *sol = sum; 1895e510cb1fSThomas Klotz 1896b3c0f97bSTom Klotz PetscFunctionReturn(0); 1897b3c0f97bSTom Klotz } 1898b3c0f97bSTom Klotz 1899497880caSRichard Tran Mills #if defined(PETSC_HAVE_MPFR) 190029f144ccSMatthew G. Knepley PetscErrorCode PetscDTTanhSinhIntegrateMPFR(void (*func)(PetscReal, PetscReal *), PetscReal a, PetscReal b, PetscInt digits, PetscReal *sol) 190129f144ccSMatthew G. Knepley { 1902e510cb1fSThomas Klotz const PetscInt safetyFactor = 2; /* Calculate abcissa until 2*p digits */ 190329f144ccSMatthew G. Knepley PetscInt l = 0; /* Level of refinement, h = 2^{-l} */ 190429f144ccSMatthew G. Knepley mpfr_t alpha; /* Half-width of the integration interval */ 190529f144ccSMatthew G. Knepley mpfr_t beta; /* Center of the integration interval */ 190629f144ccSMatthew G. Knepley mpfr_t h; /* Step size, length between x_k */ 190729f144ccSMatthew G. Knepley mpfr_t osum; /* Integral on last level */ 190829f144ccSMatthew G. Knepley mpfr_t psum; /* Integral on the level before the last level */ 190929f144ccSMatthew G. Knepley mpfr_t sum; /* Integral on current level */ 191029f144ccSMatthew G. Knepley mpfr_t yk; /* Quadrature point 1 - x_k on reference domain [-1, 1] */ 191129f144ccSMatthew G. Knepley mpfr_t lx, rx; /* Quadrature points to the left and right of 0 on the real domain [a, b] */ 191229f144ccSMatthew G. Knepley mpfr_t wk; /* Quadrature weight at x_k */ 191329f144ccSMatthew G. Knepley PetscReal lval, rval; /* Terms in the quadature sum to the left and right of 0 */ 191429f144ccSMatthew G. Knepley PetscInt d; /* Digits of precision in the integral */ 191529f144ccSMatthew G. Knepley mpfr_t pi2, kh, msinh, mcosh, maxTerm, curTerm, tmp; 191629f144ccSMatthew G. Knepley 191729f144ccSMatthew G. Knepley PetscFunctionBegin; 191829f144ccSMatthew G. Knepley if (digits <= 0) SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Must give a positive number of significant digits"); 191929f144ccSMatthew G. Knepley /* Create high precision storage */ 1920c9f744b5SMatthew G. Knepley mpfr_inits2(PetscCeilReal(safetyFactor*digits*PetscLogReal(10.)/PetscLogReal(2.)), alpha, beta, h, sum, osum, psum, yk, wk, lx, rx, tmp, maxTerm, curTerm, pi2, kh, msinh, mcosh, NULL); 192129f144ccSMatthew G. Knepley /* Initialization */ 192229f144ccSMatthew G. Knepley mpfr_set_d(alpha, 0.5*(b-a), MPFR_RNDN); 192329f144ccSMatthew G. Knepley mpfr_set_d(beta, 0.5*(b+a), MPFR_RNDN); 192429f144ccSMatthew G. Knepley mpfr_set_d(osum, 0.0, MPFR_RNDN); 192529f144ccSMatthew G. Knepley mpfr_set_d(psum, 0.0, MPFR_RNDN); 192629f144ccSMatthew G. Knepley mpfr_set_d(h, 1.0, MPFR_RNDN); 192729f144ccSMatthew G. Knepley mpfr_const_pi(pi2, MPFR_RNDN); 192829f144ccSMatthew G. Knepley mpfr_mul_d(pi2, pi2, 0.5, MPFR_RNDN); 192929f144ccSMatthew G. Knepley /* Center term */ 193029f144ccSMatthew G. Knepley func(0.5*(b+a), &lval); 193129f144ccSMatthew G. Knepley mpfr_set(sum, pi2, MPFR_RNDN); 193229f144ccSMatthew G. Knepley mpfr_mul(sum, sum, alpha, MPFR_RNDN); 193329f144ccSMatthew G. Knepley mpfr_mul_d(sum, sum, lval, MPFR_RNDN); 193429f144ccSMatthew G. Knepley /* */ 193529f144ccSMatthew G. Knepley do { 193629f144ccSMatthew G. Knepley PetscReal d1, d2, d3, d4; 193729f144ccSMatthew G. Knepley PetscInt k = 1; 193829f144ccSMatthew G. Knepley 193929f144ccSMatthew G. Knepley ++l; 194029f144ccSMatthew G. Knepley mpfr_set_d(maxTerm, 0.0, MPFR_RNDN); 194129f144ccSMatthew G. Knepley /* PetscPrintf(PETSC_COMM_SELF, "LEVEL %D sum: %15.15f\n", l, sum); */ 194229f144ccSMatthew G. Knepley /* At each level of refinement, h --> h/2 and sum --> sum/2 */ 194329f144ccSMatthew G. Knepley mpfr_set(psum, osum, MPFR_RNDN); 194429f144ccSMatthew G. Knepley mpfr_set(osum, sum, MPFR_RNDN); 194529f144ccSMatthew G. Knepley mpfr_mul_d(h, h, 0.5, MPFR_RNDN); 194629f144ccSMatthew G. Knepley mpfr_mul_d(sum, sum, 0.5, MPFR_RNDN); 194729f144ccSMatthew G. Knepley do { 194829f144ccSMatthew G. Knepley mpfr_set_si(kh, k, MPFR_RNDN); 194929f144ccSMatthew G. Knepley mpfr_mul(kh, kh, h, MPFR_RNDN); 195029f144ccSMatthew G. Knepley /* Weight */ 195129f144ccSMatthew G. Knepley mpfr_set(wk, h, MPFR_RNDN); 195229f144ccSMatthew G. Knepley mpfr_sinh_cosh(msinh, mcosh, kh, MPFR_RNDN); 195329f144ccSMatthew G. Knepley mpfr_mul(msinh, msinh, pi2, MPFR_RNDN); 195429f144ccSMatthew G. Knepley mpfr_mul(mcosh, mcosh, pi2, MPFR_RNDN); 195529f144ccSMatthew G. Knepley mpfr_cosh(tmp, msinh, MPFR_RNDN); 195629f144ccSMatthew G. Knepley mpfr_sqr(tmp, tmp, MPFR_RNDN); 195729f144ccSMatthew G. Knepley mpfr_mul(wk, wk, mcosh, MPFR_RNDN); 195829f144ccSMatthew G. Knepley mpfr_div(wk, wk, tmp, MPFR_RNDN); 195929f144ccSMatthew G. Knepley /* Abscissa */ 196029f144ccSMatthew G. Knepley mpfr_set_d(yk, 1.0, MPFR_RNDZ); 196129f144ccSMatthew G. Knepley mpfr_cosh(tmp, msinh, MPFR_RNDN); 196229f144ccSMatthew G. Knepley mpfr_div(yk, yk, tmp, MPFR_RNDZ); 196329f144ccSMatthew G. Knepley mpfr_exp(tmp, msinh, MPFR_RNDN); 196429f144ccSMatthew G. Knepley mpfr_div(yk, yk, tmp, MPFR_RNDZ); 196529f144ccSMatthew G. Knepley /* Quadrature points */ 196629f144ccSMatthew G. Knepley mpfr_sub_d(lx, yk, 1.0, MPFR_RNDZ); 196729f144ccSMatthew G. Knepley mpfr_mul(lx, lx, alpha, MPFR_RNDU); 196829f144ccSMatthew G. Knepley mpfr_add(lx, lx, beta, MPFR_RNDU); 196929f144ccSMatthew G. Knepley mpfr_d_sub(rx, 1.0, yk, MPFR_RNDZ); 197029f144ccSMatthew G. Knepley mpfr_mul(rx, rx, alpha, MPFR_RNDD); 197129f144ccSMatthew G. Knepley mpfr_add(rx, rx, beta, MPFR_RNDD); 197229f144ccSMatthew G. Knepley /* Evaluation */ 197329f144ccSMatthew G. Knepley func(mpfr_get_d(lx, MPFR_RNDU), &lval); 197429f144ccSMatthew G. Knepley func(mpfr_get_d(rx, MPFR_RNDD), &rval); 197529f144ccSMatthew G. Knepley /* Update */ 197629f144ccSMatthew G. Knepley mpfr_mul(tmp, wk, alpha, MPFR_RNDN); 197729f144ccSMatthew G. Knepley mpfr_mul_d(tmp, tmp, lval, MPFR_RNDN); 197829f144ccSMatthew G. Knepley mpfr_add(sum, sum, tmp, MPFR_RNDN); 197929f144ccSMatthew G. Knepley mpfr_abs(tmp, tmp, MPFR_RNDN); 198029f144ccSMatthew G. Knepley mpfr_max(maxTerm, maxTerm, tmp, MPFR_RNDN); 198129f144ccSMatthew G. Knepley mpfr_set(curTerm, tmp, MPFR_RNDN); 198229f144ccSMatthew G. Knepley mpfr_mul(tmp, wk, alpha, MPFR_RNDN); 198329f144ccSMatthew G. Knepley mpfr_mul_d(tmp, tmp, rval, MPFR_RNDN); 198429f144ccSMatthew G. Knepley mpfr_add(sum, sum, tmp, MPFR_RNDN); 198529f144ccSMatthew G. Knepley mpfr_abs(tmp, tmp, MPFR_RNDN); 198629f144ccSMatthew G. Knepley mpfr_max(maxTerm, maxTerm, tmp, MPFR_RNDN); 198729f144ccSMatthew G. Knepley mpfr_max(curTerm, curTerm, tmp, MPFR_RNDN); 198829f144ccSMatthew G. Knepley ++k; 198929f144ccSMatthew G. Knepley /* Only need to evaluate every other point on refined levels */ 199029f144ccSMatthew G. Knepley if (l != 1) ++k; 199129f144ccSMatthew G. Knepley mpfr_log10(tmp, wk, MPFR_RNDN); 199229f144ccSMatthew G. Knepley mpfr_abs(tmp, tmp, MPFR_RNDN); 1993c9f744b5SMatthew G. Knepley } while (mpfr_get_d(tmp, MPFR_RNDN) < safetyFactor*digits); /* Only need to evaluate sum until weights are < 32 digits of precision */ 199429f144ccSMatthew G. Knepley mpfr_sub(tmp, sum, osum, MPFR_RNDN); 199529f144ccSMatthew G. Knepley mpfr_abs(tmp, tmp, MPFR_RNDN); 199629f144ccSMatthew G. Knepley mpfr_log10(tmp, tmp, MPFR_RNDN); 199729f144ccSMatthew G. Knepley d1 = mpfr_get_d(tmp, MPFR_RNDN); 199829f144ccSMatthew G. Knepley mpfr_sub(tmp, sum, psum, MPFR_RNDN); 199929f144ccSMatthew G. Knepley mpfr_abs(tmp, tmp, MPFR_RNDN); 200029f144ccSMatthew G. Knepley mpfr_log10(tmp, tmp, MPFR_RNDN); 200129f144ccSMatthew G. Knepley d2 = mpfr_get_d(tmp, MPFR_RNDN); 200229f144ccSMatthew G. Knepley mpfr_log10(tmp, maxTerm, MPFR_RNDN); 2003c9f744b5SMatthew G. Knepley d3 = mpfr_get_d(tmp, MPFR_RNDN) - digits; 200429f144ccSMatthew G. Knepley mpfr_log10(tmp, curTerm, MPFR_RNDN); 200529f144ccSMatthew G. Knepley d4 = mpfr_get_d(tmp, MPFR_RNDN); 200629f144ccSMatthew G. Knepley d = PetscAbsInt(PetscMin(0, PetscMax(PetscMax(PetscMax(PetscSqr(d1)/d2, 2*d1), d3), d4))); 2007b0649871SThomas Klotz } while (d < digits && l < 8); 200829f144ccSMatthew G. Knepley *sol = mpfr_get_d(sum, MPFR_RNDN); 200929f144ccSMatthew G. Knepley /* Cleanup */ 201029f144ccSMatthew G. Knepley mpfr_clears(alpha, beta, h, sum, osum, psum, yk, wk, lx, rx, tmp, maxTerm, curTerm, pi2, kh, msinh, mcosh, NULL); 201129f144ccSMatthew G. Knepley PetscFunctionReturn(0); 201229f144ccSMatthew G. Knepley } 2013d525116cSMatthew G. Knepley #else 2014fbfcfee5SBarry Smith 2015d525116cSMatthew G. Knepley PetscErrorCode PetscDTTanhSinhIntegrateMPFR(void (*func)(PetscReal, PetscReal *), PetscReal a, PetscReal b, PetscInt digits, PetscReal *sol) 2016d525116cSMatthew G. Knepley { 2017d525116cSMatthew G. Knepley SETERRQ(PETSC_COMM_SELF, PETSC_ERR_SUP, "This method will not work without MPFR. Reconfigure using --download-mpfr --download-gmp"); 2018d525116cSMatthew G. Knepley } 201929f144ccSMatthew G. Knepley #endif 202029f144ccSMatthew G. Knepley 2021194825f6SJed Brown /* Overwrites A. Can only handle full-rank problems with m>=n 2022194825f6SJed Brown * A in column-major format 2023194825f6SJed Brown * Ainv in row-major format 2024194825f6SJed Brown * tau has length m 2025194825f6SJed Brown * worksize must be >= max(1,n) 2026194825f6SJed Brown */ 2027194825f6SJed Brown static PetscErrorCode PetscDTPseudoInverseQR(PetscInt m,PetscInt mstride,PetscInt n,PetscReal *A_in,PetscReal *Ainv_out,PetscScalar *tau,PetscInt worksize,PetscScalar *work) 2028194825f6SJed Brown { 2029194825f6SJed Brown PetscErrorCode ierr; 2030194825f6SJed Brown PetscBLASInt M,N,K,lda,ldb,ldwork,info; 2031194825f6SJed Brown PetscScalar *A,*Ainv,*R,*Q,Alpha; 2032194825f6SJed Brown 2033194825f6SJed Brown PetscFunctionBegin; 2034194825f6SJed Brown #if defined(PETSC_USE_COMPLEX) 2035194825f6SJed Brown { 2036194825f6SJed Brown PetscInt i,j; 2037dcca6d9dSJed Brown ierr = PetscMalloc2(m*n,&A,m*n,&Ainv);CHKERRQ(ierr); 2038194825f6SJed Brown for (j=0; j<n; j++) { 2039194825f6SJed Brown for (i=0; i<m; i++) A[i+m*j] = A_in[i+mstride*j]; 2040194825f6SJed Brown } 2041194825f6SJed Brown mstride = m; 2042194825f6SJed Brown } 2043194825f6SJed Brown #else 2044194825f6SJed Brown A = A_in; 2045194825f6SJed Brown Ainv = Ainv_out; 2046194825f6SJed Brown #endif 2047194825f6SJed Brown 2048194825f6SJed Brown ierr = PetscBLASIntCast(m,&M);CHKERRQ(ierr); 2049194825f6SJed Brown ierr = PetscBLASIntCast(n,&N);CHKERRQ(ierr); 2050194825f6SJed Brown ierr = PetscBLASIntCast(mstride,&lda);CHKERRQ(ierr); 2051194825f6SJed Brown ierr = PetscBLASIntCast(worksize,&ldwork);CHKERRQ(ierr); 2052194825f6SJed Brown ierr = PetscFPTrapPush(PETSC_FP_TRAP_OFF);CHKERRQ(ierr); 2053001a771dSBarry Smith PetscStackCallBLAS("LAPACKgeqrf",LAPACKgeqrf_(&M,&N,A,&lda,tau,work,&ldwork,&info)); 2054194825f6SJed Brown ierr = PetscFPTrapPop();CHKERRQ(ierr); 2055194825f6SJed Brown if (info) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_LIB,"xGEQRF error"); 2056194825f6SJed Brown R = A; /* Upper triangular part of A now contains R, the rest contains the elementary reflectors */ 2057194825f6SJed Brown 2058194825f6SJed Brown /* Extract an explicit representation of Q */ 2059194825f6SJed Brown Q = Ainv; 2060580bdb30SBarry Smith ierr = PetscArraycpy(Q,A,mstride*n);CHKERRQ(ierr); 2061194825f6SJed Brown K = N; /* full rank */ 2062c964aadfSJose E. Roman PetscStackCallBLAS("LAPACKorgqr",LAPACKorgqr_(&M,&N,&K,Q,&lda,tau,work,&ldwork,&info)); 2063194825f6SJed Brown if (info) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_LIB,"xORGQR/xUNGQR error"); 2064194825f6SJed Brown 2065194825f6SJed Brown /* Compute A^{-T} = (R^{-1} Q^T)^T = Q R^{-T} */ 2066194825f6SJed Brown Alpha = 1.0; 2067194825f6SJed Brown ldb = lda; 2068001a771dSBarry Smith PetscStackCallBLAS("BLAStrsm",BLAStrsm_("Right","Upper","ConjugateTranspose","NotUnitTriangular",&M,&N,&Alpha,R,&lda,Q,&ldb)); 2069194825f6SJed Brown /* Ainv is Q, overwritten with inverse */ 2070194825f6SJed Brown 2071194825f6SJed Brown #if defined(PETSC_USE_COMPLEX) 2072194825f6SJed Brown { 2073194825f6SJed Brown PetscInt i; 2074194825f6SJed Brown for (i=0; i<m*n; i++) Ainv_out[i] = PetscRealPart(Ainv[i]); 2075194825f6SJed Brown ierr = PetscFree2(A,Ainv);CHKERRQ(ierr); 2076194825f6SJed Brown } 2077194825f6SJed Brown #endif 2078194825f6SJed Brown PetscFunctionReturn(0); 2079194825f6SJed Brown } 2080194825f6SJed Brown 2081194825f6SJed Brown /* Computes integral of L_p' over intervals {(x0,x1),(x1,x2),...} */ 2082194825f6SJed Brown static PetscErrorCode PetscDTLegendreIntegrate(PetscInt ninterval,const PetscReal *x,PetscInt ndegree,const PetscInt *degrees,PetscBool Transpose,PetscReal *B) 2083194825f6SJed Brown { 2084194825f6SJed Brown PetscErrorCode ierr; 2085194825f6SJed Brown PetscReal *Bv; 2086194825f6SJed Brown PetscInt i,j; 2087194825f6SJed Brown 2088194825f6SJed Brown PetscFunctionBegin; 2089785e854fSJed Brown ierr = PetscMalloc1((ninterval+1)*ndegree,&Bv);CHKERRQ(ierr); 2090194825f6SJed Brown /* Point evaluation of L_p on all the source vertices */ 2091194825f6SJed Brown ierr = PetscDTLegendreEval(ninterval+1,x,ndegree,degrees,Bv,NULL,NULL);CHKERRQ(ierr); 2092194825f6SJed Brown /* Integral over each interval: \int_a^b L_p' = L_p(b)-L_p(a) */ 2093194825f6SJed Brown for (i=0; i<ninterval; i++) { 2094194825f6SJed Brown for (j=0; j<ndegree; j++) { 2095194825f6SJed Brown if (Transpose) B[i+ninterval*j] = Bv[(i+1)*ndegree+j] - Bv[i*ndegree+j]; 2096194825f6SJed Brown else B[i*ndegree+j] = Bv[(i+1)*ndegree+j] - Bv[i*ndegree+j]; 2097194825f6SJed Brown } 2098194825f6SJed Brown } 2099194825f6SJed Brown ierr = PetscFree(Bv);CHKERRQ(ierr); 2100194825f6SJed Brown PetscFunctionReturn(0); 2101194825f6SJed Brown } 2102194825f6SJed Brown 2103194825f6SJed Brown /*@ 2104194825f6SJed Brown PetscDTReconstructPoly - create matrix representing polynomial reconstruction using cell intervals and evaluation at target intervals 2105194825f6SJed Brown 2106194825f6SJed Brown Not Collective 2107194825f6SJed Brown 21084165533cSJose E. Roman Input Parameters: 2109194825f6SJed Brown + degree - degree of reconstruction polynomial 2110194825f6SJed Brown . nsource - number of source intervals 2111194825f6SJed Brown . sourcex - sorted coordinates of source cell boundaries (length nsource+1) 2112194825f6SJed Brown . ntarget - number of target intervals 2113194825f6SJed Brown - targetx - sorted coordinates of target cell boundaries (length ntarget+1) 2114194825f6SJed Brown 21154165533cSJose E. Roman Output Parameter: 2116194825f6SJed Brown . R - reconstruction matrix, utarget = sum_s R[t*nsource+s] * usource[s] 2117194825f6SJed Brown 2118194825f6SJed Brown Level: advanced 2119194825f6SJed Brown 2120194825f6SJed Brown .seealso: PetscDTLegendreEval() 2121194825f6SJed Brown @*/ 2122194825f6SJed Brown PetscErrorCode PetscDTReconstructPoly(PetscInt degree,PetscInt nsource,const PetscReal *sourcex,PetscInt ntarget,const PetscReal *targetx,PetscReal *R) 2123194825f6SJed Brown { 2124194825f6SJed Brown PetscErrorCode ierr; 2125194825f6SJed Brown PetscInt i,j,k,*bdegrees,worksize; 2126194825f6SJed Brown PetscReal xmin,xmax,center,hscale,*sourcey,*targety,*Bsource,*Bsinv,*Btarget; 2127194825f6SJed Brown PetscScalar *tau,*work; 2128194825f6SJed Brown 2129194825f6SJed Brown PetscFunctionBegin; 2130194825f6SJed Brown PetscValidRealPointer(sourcex,3); 2131194825f6SJed Brown PetscValidRealPointer(targetx,5); 2132194825f6SJed Brown PetscValidRealPointer(R,6); 2133194825f6SJed Brown if (degree >= nsource) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"Reconstruction degree %D must be less than number of source intervals %D",degree,nsource); 213476bd3646SJed Brown if (PetscDefined(USE_DEBUG)) { 2135194825f6SJed Brown for (i=0; i<nsource; i++) { 213657622a8eSBarry Smith if (sourcex[i] >= sourcex[i+1]) SETERRQ3(PETSC_COMM_SELF,PETSC_ERR_ARG_CORRUPT,"Source interval %D has negative orientation (%g,%g)",i,(double)sourcex[i],(double)sourcex[i+1]); 2137194825f6SJed Brown } 2138194825f6SJed Brown for (i=0; i<ntarget; i++) { 213957622a8eSBarry Smith if (targetx[i] >= targetx[i+1]) SETERRQ3(PETSC_COMM_SELF,PETSC_ERR_ARG_CORRUPT,"Target interval %D has negative orientation (%g,%g)",i,(double)targetx[i],(double)targetx[i+1]); 2140194825f6SJed Brown } 214176bd3646SJed Brown } 2142194825f6SJed Brown xmin = PetscMin(sourcex[0],targetx[0]); 2143194825f6SJed Brown xmax = PetscMax(sourcex[nsource],targetx[ntarget]); 2144194825f6SJed Brown center = (xmin + xmax)/2; 2145194825f6SJed Brown hscale = (xmax - xmin)/2; 2146194825f6SJed Brown worksize = nsource; 2147dcca6d9dSJed Brown ierr = PetscMalloc4(degree+1,&bdegrees,nsource+1,&sourcey,nsource*(degree+1),&Bsource,worksize,&work);CHKERRQ(ierr); 2148dcca6d9dSJed Brown ierr = PetscMalloc4(nsource,&tau,nsource*(degree+1),&Bsinv,ntarget+1,&targety,ntarget*(degree+1),&Btarget);CHKERRQ(ierr); 2149194825f6SJed Brown for (i=0; i<=nsource; i++) sourcey[i] = (sourcex[i]-center)/hscale; 2150194825f6SJed Brown for (i=0; i<=degree; i++) bdegrees[i] = i+1; 2151194825f6SJed Brown ierr = PetscDTLegendreIntegrate(nsource,sourcey,degree+1,bdegrees,PETSC_TRUE,Bsource);CHKERRQ(ierr); 2152194825f6SJed Brown ierr = PetscDTPseudoInverseQR(nsource,nsource,degree+1,Bsource,Bsinv,tau,nsource,work);CHKERRQ(ierr); 2153194825f6SJed Brown for (i=0; i<=ntarget; i++) targety[i] = (targetx[i]-center)/hscale; 2154194825f6SJed Brown ierr = PetscDTLegendreIntegrate(ntarget,targety,degree+1,bdegrees,PETSC_FALSE,Btarget);CHKERRQ(ierr); 2155194825f6SJed Brown for (i=0; i<ntarget; i++) { 2156194825f6SJed Brown PetscReal rowsum = 0; 2157194825f6SJed Brown for (j=0; j<nsource; j++) { 2158194825f6SJed Brown PetscReal sum = 0; 2159194825f6SJed Brown for (k=0; k<degree+1; k++) { 2160194825f6SJed Brown sum += Btarget[i*(degree+1)+k] * Bsinv[k*nsource+j]; 2161194825f6SJed Brown } 2162194825f6SJed Brown R[i*nsource+j] = sum; 2163194825f6SJed Brown rowsum += sum; 2164194825f6SJed Brown } 2165194825f6SJed Brown for (j=0; j<nsource; j++) R[i*nsource+j] /= rowsum; /* normalize each row */ 2166194825f6SJed Brown } 2167194825f6SJed Brown ierr = PetscFree4(bdegrees,sourcey,Bsource,work);CHKERRQ(ierr); 2168194825f6SJed Brown ierr = PetscFree4(tau,Bsinv,targety,Btarget);CHKERRQ(ierr); 2169194825f6SJed Brown PetscFunctionReturn(0); 2170194825f6SJed Brown } 2171916e780bShannah_mairs 2172916e780bShannah_mairs /*@C 2173916e780bShannah_mairs PetscGaussLobattoLegendreIntegrate - Compute the L2 integral of a function on the GLL points 2174916e780bShannah_mairs 2175916e780bShannah_mairs Not Collective 2176916e780bShannah_mairs 2177d8d19677SJose E. Roman Input Parameters: 2178916e780bShannah_mairs + n - the number of GLL nodes 2179916e780bShannah_mairs . nodes - the GLL nodes 2180916e780bShannah_mairs . weights - the GLL weights 2181f0fc11ceSJed Brown - f - the function values at the nodes 2182916e780bShannah_mairs 2183916e780bShannah_mairs Output Parameter: 2184916e780bShannah_mairs . in - the value of the integral 2185916e780bShannah_mairs 2186916e780bShannah_mairs Level: beginner 2187916e780bShannah_mairs 2188916e780bShannah_mairs .seealso: PetscDTGaussLobattoLegendreQuadrature() 2189916e780bShannah_mairs 2190916e780bShannah_mairs @*/ 2191916e780bShannah_mairs PetscErrorCode PetscGaussLobattoLegendreIntegrate(PetscInt n,PetscReal *nodes,PetscReal *weights,const PetscReal *f,PetscReal *in) 2192916e780bShannah_mairs { 2193916e780bShannah_mairs PetscInt i; 2194916e780bShannah_mairs 2195916e780bShannah_mairs PetscFunctionBegin; 2196916e780bShannah_mairs *in = 0.; 2197916e780bShannah_mairs for (i=0; i<n; i++) { 2198916e780bShannah_mairs *in += f[i]*f[i]*weights[i]; 2199916e780bShannah_mairs } 2200916e780bShannah_mairs PetscFunctionReturn(0); 2201916e780bShannah_mairs } 2202916e780bShannah_mairs 2203916e780bShannah_mairs /*@C 2204916e780bShannah_mairs PetscGaussLobattoLegendreElementLaplacianCreate - computes the Laplacian for a single 1d GLL element 2205916e780bShannah_mairs 2206916e780bShannah_mairs Not Collective 2207916e780bShannah_mairs 2208d8d19677SJose E. Roman Input Parameters: 2209916e780bShannah_mairs + n - the number of GLL nodes 2210916e780bShannah_mairs . nodes - the GLL nodes 2211f0fc11ceSJed Brown - weights - the GLL weights 2212916e780bShannah_mairs 2213916e780bShannah_mairs Output Parameter: 2214916e780bShannah_mairs . A - the stiffness element 2215916e780bShannah_mairs 2216916e780bShannah_mairs Level: beginner 2217916e780bShannah_mairs 2218916e780bShannah_mairs Notes: 2219916e780bShannah_mairs Destroy this with PetscGaussLobattoLegendreElementLaplacianDestroy() 2220916e780bShannah_mairs 2221916e780bShannah_mairs You can access entries in this array with AA[i][j] but in memory it is stored in contiguous memory, row oriented (the array is symmetric) 2222916e780bShannah_mairs 2223916e780bShannah_mairs .seealso: PetscDTGaussLobattoLegendreQuadrature(), PetscGaussLobattoLegendreElementLaplacianDestroy() 2224916e780bShannah_mairs 2225916e780bShannah_mairs @*/ 2226916e780bShannah_mairs PetscErrorCode PetscGaussLobattoLegendreElementLaplacianCreate(PetscInt n,PetscReal *nodes,PetscReal *weights,PetscReal ***AA) 2227916e780bShannah_mairs { 2228916e780bShannah_mairs PetscReal **A; 2229916e780bShannah_mairs PetscErrorCode ierr; 2230916e780bShannah_mairs const PetscReal *gllnodes = nodes; 2231916e780bShannah_mairs const PetscInt p = n-1; 2232916e780bShannah_mairs PetscReal z0,z1,z2 = -1,x,Lpj,Lpr; 2233916e780bShannah_mairs PetscInt i,j,nn,r; 2234916e780bShannah_mairs 2235916e780bShannah_mairs PetscFunctionBegin; 2236916e780bShannah_mairs ierr = PetscMalloc1(n,&A);CHKERRQ(ierr); 2237916e780bShannah_mairs ierr = PetscMalloc1(n*n,&A[0]);CHKERRQ(ierr); 2238916e780bShannah_mairs for (i=1; i<n; i++) A[i] = A[i-1]+n; 2239916e780bShannah_mairs 2240916e780bShannah_mairs for (j=1; j<p; j++) { 2241916e780bShannah_mairs x = gllnodes[j]; 2242916e780bShannah_mairs z0 = 1.; 2243916e780bShannah_mairs z1 = x; 2244916e780bShannah_mairs for (nn=1; nn<p; nn++) { 2245916e780bShannah_mairs z2 = x*z1*(2.*((PetscReal)nn)+1.)/(((PetscReal)nn)+1.)-z0*(((PetscReal)nn)/(((PetscReal)nn)+1.)); 2246916e780bShannah_mairs z0 = z1; 2247916e780bShannah_mairs z1 = z2; 2248916e780bShannah_mairs } 2249916e780bShannah_mairs Lpj=z2; 2250916e780bShannah_mairs for (r=1; r<p; r++) { 2251916e780bShannah_mairs if (r == j) { 2252916e780bShannah_mairs A[j][j]=2./(3.*(1.-gllnodes[j]*gllnodes[j])*Lpj*Lpj); 2253916e780bShannah_mairs } else { 2254916e780bShannah_mairs x = gllnodes[r]; 2255916e780bShannah_mairs z0 = 1.; 2256916e780bShannah_mairs z1 = x; 2257916e780bShannah_mairs for (nn=1; nn<p; nn++) { 2258916e780bShannah_mairs z2 = x*z1*(2.*((PetscReal)nn)+1.)/(((PetscReal)nn)+1.)-z0*(((PetscReal)nn)/(((PetscReal)nn)+1.)); 2259916e780bShannah_mairs z0 = z1; 2260916e780bShannah_mairs z1 = z2; 2261916e780bShannah_mairs } 2262916e780bShannah_mairs Lpr = z2; 2263916e780bShannah_mairs A[r][j] = 4./(((PetscReal)p)*(((PetscReal)p)+1.)*Lpj*Lpr*(gllnodes[j]-gllnodes[r])*(gllnodes[j]-gllnodes[r])); 2264916e780bShannah_mairs } 2265916e780bShannah_mairs } 2266916e780bShannah_mairs } 2267916e780bShannah_mairs for (j=1; j<p+1; j++) { 2268916e780bShannah_mairs x = gllnodes[j]; 2269916e780bShannah_mairs z0 = 1.; 2270916e780bShannah_mairs z1 = x; 2271916e780bShannah_mairs for (nn=1; nn<p; nn++) { 2272916e780bShannah_mairs z2 = x*z1*(2.*((PetscReal)nn)+1.)/(((PetscReal)nn)+1.)-z0*(((PetscReal)nn)/(((PetscReal)nn)+1.)); 2273916e780bShannah_mairs z0 = z1; 2274916e780bShannah_mairs z1 = z2; 2275916e780bShannah_mairs } 2276916e780bShannah_mairs Lpj = z2; 2277916e780bShannah_mairs A[j][0] = 4.*PetscPowRealInt(-1.,p)/(((PetscReal)p)*(((PetscReal)p)+1.)*Lpj*(1.+gllnodes[j])*(1.+gllnodes[j])); 2278916e780bShannah_mairs A[0][j] = A[j][0]; 2279916e780bShannah_mairs } 2280916e780bShannah_mairs for (j=0; j<p; j++) { 2281916e780bShannah_mairs x = gllnodes[j]; 2282916e780bShannah_mairs z0 = 1.; 2283916e780bShannah_mairs z1 = x; 2284916e780bShannah_mairs for (nn=1; nn<p; nn++) { 2285916e780bShannah_mairs z2 = x*z1*(2.*((PetscReal)nn)+1.)/(((PetscReal)nn)+1.)-z0*(((PetscReal)nn)/(((PetscReal)nn)+1.)); 2286916e780bShannah_mairs z0 = z1; 2287916e780bShannah_mairs z1 = z2; 2288916e780bShannah_mairs } 2289916e780bShannah_mairs Lpj=z2; 2290916e780bShannah_mairs 2291916e780bShannah_mairs A[p][j] = 4./(((PetscReal)p)*(((PetscReal)p)+1.)*Lpj*(1.-gllnodes[j])*(1.-gllnodes[j])); 2292916e780bShannah_mairs A[j][p] = A[p][j]; 2293916e780bShannah_mairs } 2294916e780bShannah_mairs A[0][0]=0.5+(((PetscReal)p)*(((PetscReal)p)+1.)-2.)/6.; 2295916e780bShannah_mairs A[p][p]=A[0][0]; 2296916e780bShannah_mairs *AA = A; 2297916e780bShannah_mairs PetscFunctionReturn(0); 2298916e780bShannah_mairs } 2299916e780bShannah_mairs 2300916e780bShannah_mairs /*@C 2301916e780bShannah_mairs PetscGaussLobattoLegendreElementLaplacianDestroy - frees the Laplacian for a single 1d GLL element 2302916e780bShannah_mairs 2303916e780bShannah_mairs Not Collective 2304916e780bShannah_mairs 2305d8d19677SJose E. Roman Input Parameters: 2306916e780bShannah_mairs + n - the number of GLL nodes 2307916e780bShannah_mairs . nodes - the GLL nodes 2308916e780bShannah_mairs . weights - the GLL weightss 2309916e780bShannah_mairs - A - the stiffness element 2310916e780bShannah_mairs 2311916e780bShannah_mairs Level: beginner 2312916e780bShannah_mairs 2313916e780bShannah_mairs .seealso: PetscDTGaussLobattoLegendreQuadrature(), PetscGaussLobattoLegendreElementLaplacianCreate() 2314916e780bShannah_mairs 2315916e780bShannah_mairs @*/ 2316916e780bShannah_mairs PetscErrorCode PetscGaussLobattoLegendreElementLaplacianDestroy(PetscInt n,PetscReal *nodes,PetscReal *weights,PetscReal ***AA) 2317916e780bShannah_mairs { 2318916e780bShannah_mairs PetscErrorCode ierr; 2319916e780bShannah_mairs 2320916e780bShannah_mairs PetscFunctionBegin; 2321916e780bShannah_mairs ierr = PetscFree((*AA)[0]);CHKERRQ(ierr); 2322916e780bShannah_mairs ierr = PetscFree(*AA);CHKERRQ(ierr); 2323916e780bShannah_mairs *AA = NULL; 2324916e780bShannah_mairs PetscFunctionReturn(0); 2325916e780bShannah_mairs } 2326916e780bShannah_mairs 2327916e780bShannah_mairs /*@C 2328916e780bShannah_mairs PetscGaussLobattoLegendreElementGradientCreate - computes the gradient for a single 1d GLL element 2329916e780bShannah_mairs 2330916e780bShannah_mairs Not Collective 2331916e780bShannah_mairs 2332916e780bShannah_mairs Input Parameter: 2333916e780bShannah_mairs + n - the number of GLL nodes 2334916e780bShannah_mairs . nodes - the GLL nodes 2335916e780bShannah_mairs . weights - the GLL weights 2336916e780bShannah_mairs 2337d8d19677SJose E. Roman Output Parameters: 2338916e780bShannah_mairs . AA - the stiffness element 2339916e780bShannah_mairs - AAT - the transpose of AA (pass in NULL if you do not need this array) 2340916e780bShannah_mairs 2341916e780bShannah_mairs Level: beginner 2342916e780bShannah_mairs 2343916e780bShannah_mairs Notes: 2344916e780bShannah_mairs Destroy this with PetscGaussLobattoLegendreElementGradientDestroy() 2345916e780bShannah_mairs 2346916e780bShannah_mairs You can access entries in these arrays with AA[i][j] but in memory it is stored in contiguous memory, row oriented 2347916e780bShannah_mairs 2348916e780bShannah_mairs .seealso: PetscDTGaussLobattoLegendreQuadrature(), PetscGaussLobattoLegendreElementLaplacianDestroy() 2349916e780bShannah_mairs 2350916e780bShannah_mairs @*/ 2351916e780bShannah_mairs PetscErrorCode PetscGaussLobattoLegendreElementGradientCreate(PetscInt n,PetscReal *nodes,PetscReal *weights,PetscReal ***AA,PetscReal ***AAT) 2352916e780bShannah_mairs { 2353916e780bShannah_mairs PetscReal **A, **AT = NULL; 2354916e780bShannah_mairs PetscErrorCode ierr; 2355916e780bShannah_mairs const PetscReal *gllnodes = nodes; 2356916e780bShannah_mairs const PetscInt p = n-1; 2357e6a796c3SToby Isaac PetscReal Li, Lj,d0; 2358916e780bShannah_mairs PetscInt i,j; 2359916e780bShannah_mairs 2360916e780bShannah_mairs PetscFunctionBegin; 2361916e780bShannah_mairs ierr = PetscMalloc1(n,&A);CHKERRQ(ierr); 2362916e780bShannah_mairs ierr = PetscMalloc1(n*n,&A[0]);CHKERRQ(ierr); 2363916e780bShannah_mairs for (i=1; i<n; i++) A[i] = A[i-1]+n; 2364916e780bShannah_mairs 2365916e780bShannah_mairs if (AAT) { 2366916e780bShannah_mairs ierr = PetscMalloc1(n,&AT);CHKERRQ(ierr); 2367916e780bShannah_mairs ierr = PetscMalloc1(n*n,&AT[0]);CHKERRQ(ierr); 2368916e780bShannah_mairs for (i=1; i<n; i++) AT[i] = AT[i-1]+n; 2369916e780bShannah_mairs } 2370916e780bShannah_mairs 2371916e780bShannah_mairs if (n==1) {A[0][0] = 0.;} 2372916e780bShannah_mairs d0 = (PetscReal)p*((PetscReal)p+1.)/4.; 2373916e780bShannah_mairs for (i=0; i<n; i++) { 2374916e780bShannah_mairs for (j=0; j<n; j++) { 2375916e780bShannah_mairs A[i][j] = 0.; 2376e6a796c3SToby Isaac ierr = PetscDTComputeJacobi(0., 0., p, gllnodes[i], &Li);CHKERRQ(ierr); 2377e6a796c3SToby Isaac ierr = PetscDTComputeJacobi(0., 0., p, gllnodes[j], &Lj);CHKERRQ(ierr); 2378916e780bShannah_mairs if (i!=j) A[i][j] = Li/(Lj*(gllnodes[i]-gllnodes[j])); 2379916e780bShannah_mairs if ((j==i) && (i==0)) A[i][j] = -d0; 2380916e780bShannah_mairs if (j==i && i==p) A[i][j] = d0; 2381916e780bShannah_mairs if (AT) AT[j][i] = A[i][j]; 2382916e780bShannah_mairs } 2383916e780bShannah_mairs } 2384916e780bShannah_mairs if (AAT) *AAT = AT; 2385916e780bShannah_mairs *AA = A; 2386916e780bShannah_mairs PetscFunctionReturn(0); 2387916e780bShannah_mairs } 2388916e780bShannah_mairs 2389916e780bShannah_mairs /*@C 2390916e780bShannah_mairs PetscGaussLobattoLegendreElementGradientDestroy - frees the gradient for a single 1d GLL element obtained with PetscGaussLobattoLegendreElementGradientCreate() 2391916e780bShannah_mairs 2392916e780bShannah_mairs Not Collective 2393916e780bShannah_mairs 2394d8d19677SJose E. Roman Input Parameters: 2395916e780bShannah_mairs + n - the number of GLL nodes 2396916e780bShannah_mairs . nodes - the GLL nodes 2397916e780bShannah_mairs . weights - the GLL weights 2398916e780bShannah_mairs . AA - the stiffness element 2399916e780bShannah_mairs - AAT - the transpose of the element 2400916e780bShannah_mairs 2401916e780bShannah_mairs Level: beginner 2402916e780bShannah_mairs 2403916e780bShannah_mairs .seealso: PetscDTGaussLobattoLegendreQuadrature(), PetscGaussLobattoLegendreElementLaplacianCreate(), PetscGaussLobattoLegendreElementAdvectionCreate() 2404916e780bShannah_mairs 2405916e780bShannah_mairs @*/ 2406916e780bShannah_mairs PetscErrorCode PetscGaussLobattoLegendreElementGradientDestroy(PetscInt n,PetscReal *nodes,PetscReal *weights,PetscReal ***AA,PetscReal ***AAT) 2407916e780bShannah_mairs { 2408916e780bShannah_mairs PetscErrorCode ierr; 2409916e780bShannah_mairs 2410916e780bShannah_mairs PetscFunctionBegin; 2411916e780bShannah_mairs ierr = PetscFree((*AA)[0]);CHKERRQ(ierr); 2412916e780bShannah_mairs ierr = PetscFree(*AA);CHKERRQ(ierr); 2413916e780bShannah_mairs *AA = NULL; 2414916e780bShannah_mairs if (*AAT) { 2415916e780bShannah_mairs ierr = PetscFree((*AAT)[0]);CHKERRQ(ierr); 2416916e780bShannah_mairs ierr = PetscFree(*AAT);CHKERRQ(ierr); 2417916e780bShannah_mairs *AAT = NULL; 2418916e780bShannah_mairs } 2419916e780bShannah_mairs PetscFunctionReturn(0); 2420916e780bShannah_mairs } 2421916e780bShannah_mairs 2422916e780bShannah_mairs /*@C 2423916e780bShannah_mairs PetscGaussLobattoLegendreElementAdvectionCreate - computes the advection operator for a single 1d GLL element 2424916e780bShannah_mairs 2425916e780bShannah_mairs Not Collective 2426916e780bShannah_mairs 2427d8d19677SJose E. Roman Input Parameters: 2428916e780bShannah_mairs + n - the number of GLL nodes 2429916e780bShannah_mairs . nodes - the GLL nodes 2430f0fc11ceSJed Brown - weights - the GLL weightss 2431916e780bShannah_mairs 2432916e780bShannah_mairs Output Parameter: 2433916e780bShannah_mairs . AA - the stiffness element 2434916e780bShannah_mairs 2435916e780bShannah_mairs Level: beginner 2436916e780bShannah_mairs 2437916e780bShannah_mairs Notes: 2438916e780bShannah_mairs Destroy this with PetscGaussLobattoLegendreElementAdvectionDestroy() 2439916e780bShannah_mairs 2440916e780bShannah_mairs This is the same as the Gradient operator multiplied by the diagonal mass matrix 2441916e780bShannah_mairs 2442916e780bShannah_mairs You can access entries in this array with AA[i][j] but in memory it is stored in contiguous memory, row oriented 2443916e780bShannah_mairs 2444916e780bShannah_mairs .seealso: PetscDTGaussLobattoLegendreQuadrature(), PetscGaussLobattoLegendreElementLaplacianCreate(), PetscGaussLobattoLegendreElementAdvectionDestroy() 2445916e780bShannah_mairs 2446916e780bShannah_mairs @*/ 2447916e780bShannah_mairs PetscErrorCode PetscGaussLobattoLegendreElementAdvectionCreate(PetscInt n,PetscReal *nodes,PetscReal *weights,PetscReal ***AA) 2448916e780bShannah_mairs { 2449916e780bShannah_mairs PetscReal **D; 2450916e780bShannah_mairs PetscErrorCode ierr; 2451916e780bShannah_mairs const PetscReal *gllweights = weights; 2452916e780bShannah_mairs const PetscInt glln = n; 2453916e780bShannah_mairs PetscInt i,j; 2454916e780bShannah_mairs 2455916e780bShannah_mairs PetscFunctionBegin; 2456916e780bShannah_mairs ierr = PetscGaussLobattoLegendreElementGradientCreate(n,nodes,weights,&D,NULL);CHKERRQ(ierr); 2457916e780bShannah_mairs for (i=0; i<glln; i++) { 2458916e780bShannah_mairs for (j=0; j<glln; j++) { 2459916e780bShannah_mairs D[i][j] = gllweights[i]*D[i][j]; 2460916e780bShannah_mairs } 2461916e780bShannah_mairs } 2462916e780bShannah_mairs *AA = D; 2463916e780bShannah_mairs PetscFunctionReturn(0); 2464916e780bShannah_mairs } 2465916e780bShannah_mairs 2466916e780bShannah_mairs /*@C 2467916e780bShannah_mairs PetscGaussLobattoLegendreElementAdvectionDestroy - frees the advection stiffness for a single 1d GLL element 2468916e780bShannah_mairs 2469916e780bShannah_mairs Not Collective 2470916e780bShannah_mairs 2471d8d19677SJose E. Roman Input Parameters: 2472916e780bShannah_mairs + n - the number of GLL nodes 2473916e780bShannah_mairs . nodes - the GLL nodes 2474916e780bShannah_mairs . weights - the GLL weights 2475916e780bShannah_mairs - A - advection 2476916e780bShannah_mairs 2477916e780bShannah_mairs Level: beginner 2478916e780bShannah_mairs 2479916e780bShannah_mairs .seealso: PetscDTGaussLobattoLegendreQuadrature(), PetscGaussLobattoLegendreElementAdvectionCreate() 2480916e780bShannah_mairs 2481916e780bShannah_mairs @*/ 2482916e780bShannah_mairs PetscErrorCode PetscGaussLobattoLegendreElementAdvectionDestroy(PetscInt n,PetscReal *nodes,PetscReal *weights,PetscReal ***AA) 2483916e780bShannah_mairs { 2484916e780bShannah_mairs PetscErrorCode ierr; 2485916e780bShannah_mairs 2486916e780bShannah_mairs PetscFunctionBegin; 2487916e780bShannah_mairs ierr = PetscFree((*AA)[0]);CHKERRQ(ierr); 2488916e780bShannah_mairs ierr = PetscFree(*AA);CHKERRQ(ierr); 2489916e780bShannah_mairs *AA = NULL; 2490916e780bShannah_mairs PetscFunctionReturn(0); 2491916e780bShannah_mairs } 2492916e780bShannah_mairs 2493916e780bShannah_mairs PetscErrorCode PetscGaussLobattoLegendreElementMassCreate(PetscInt n,PetscReal *nodes,PetscReal *weights,PetscReal ***AA) 2494916e780bShannah_mairs { 2495916e780bShannah_mairs PetscReal **A; 2496916e780bShannah_mairs PetscErrorCode ierr; 2497916e780bShannah_mairs const PetscReal *gllweights = weights; 2498916e780bShannah_mairs const PetscInt glln = n; 2499916e780bShannah_mairs PetscInt i,j; 2500916e780bShannah_mairs 2501916e780bShannah_mairs PetscFunctionBegin; 2502916e780bShannah_mairs ierr = PetscMalloc1(glln,&A);CHKERRQ(ierr); 2503916e780bShannah_mairs ierr = PetscMalloc1(glln*glln,&A[0]);CHKERRQ(ierr); 2504916e780bShannah_mairs for (i=1; i<glln; i++) A[i] = A[i-1]+glln; 2505916e780bShannah_mairs if (glln==1) {A[0][0] = 0.;} 2506916e780bShannah_mairs for (i=0; i<glln; i++) { 2507916e780bShannah_mairs for (j=0; j<glln; j++) { 2508916e780bShannah_mairs A[i][j] = 0.; 2509916e780bShannah_mairs if (j==i) A[i][j] = gllweights[i]; 2510916e780bShannah_mairs } 2511916e780bShannah_mairs } 2512916e780bShannah_mairs *AA = A; 2513916e780bShannah_mairs PetscFunctionReturn(0); 2514916e780bShannah_mairs } 2515916e780bShannah_mairs 2516916e780bShannah_mairs PetscErrorCode PetscGaussLobattoLegendreElementMassDestroy(PetscInt n,PetscReal *nodes,PetscReal *weights,PetscReal ***AA) 2517916e780bShannah_mairs { 2518916e780bShannah_mairs PetscErrorCode ierr; 2519916e780bShannah_mairs 2520916e780bShannah_mairs PetscFunctionBegin; 2521916e780bShannah_mairs ierr = PetscFree((*AA)[0]);CHKERRQ(ierr); 2522916e780bShannah_mairs ierr = PetscFree(*AA);CHKERRQ(ierr); 2523916e780bShannah_mairs *AA = NULL; 2524916e780bShannah_mairs PetscFunctionReturn(0); 2525916e780bShannah_mairs } 2526d4afb720SToby Isaac 2527d4afb720SToby Isaac /*@ 2528d4afb720SToby Isaac PetscDTIndexToBary - convert an index into a barycentric coordinate. 2529d4afb720SToby Isaac 2530d4afb720SToby Isaac Input Parameters: 2531d4afb720SToby Isaac + len - the desired length of the barycentric tuple (usually 1 more than the dimension it represents, so a barycentric coordinate in a triangle has length 3) 2532d4afb720SToby Isaac . sum - the value that the sum of the barycentric coordinates (which will be non-negative integers) should sum to 2533d4afb720SToby Isaac - index - the index to convert: should be >= 0 and < Binomial(len - 1 + sum, sum) 2534d4afb720SToby Isaac 2535d4afb720SToby Isaac Output Parameter: 2536d4afb720SToby Isaac . coord - will be filled with the barycentric coordinate 2537d4afb720SToby Isaac 2538d4afb720SToby Isaac Level: beginner 2539d4afb720SToby Isaac 2540d4afb720SToby Isaac Note: the indices map to barycentric coordinates in lexicographic order, where the first index is the 2541d4afb720SToby Isaac least significant and the last index is the most significant. 2542d4afb720SToby Isaac 2543fbdc3dfeSToby Isaac .seealso: PetscDTBaryToIndex() 2544d4afb720SToby Isaac @*/ 2545d4afb720SToby Isaac PetscErrorCode PetscDTIndexToBary(PetscInt len, PetscInt sum, PetscInt index, PetscInt coord[]) 2546d4afb720SToby Isaac { 2547d4afb720SToby Isaac PetscInt c, d, s, total, subtotal, nexttotal; 2548d4afb720SToby Isaac 2549d4afb720SToby Isaac PetscFunctionBeginHot; 2550d4afb720SToby Isaac if (len < 0) SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "length must be non-negative"); 2551d4afb720SToby Isaac if (index < 0) SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "index must be non-negative"); 2552d4afb720SToby Isaac if (!len) { 2553d4afb720SToby Isaac if (!sum && !index) PetscFunctionReturn(0); 2554d4afb720SToby Isaac SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Invalid index or sum for length 0 barycentric coordinate"); 2555d4afb720SToby Isaac } 2556d4afb720SToby Isaac for (c = 1, total = 1; c <= len; c++) { 2557d4afb720SToby Isaac /* total is the number of ways to have a tuple of length c with sum */ 2558d4afb720SToby Isaac if (index < total) break; 2559d4afb720SToby Isaac total = (total * (sum + c)) / c; 2560d4afb720SToby Isaac } 2561d4afb720SToby Isaac if (c > len) SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "index out of range"); 2562d4afb720SToby Isaac for (d = c; d < len; d++) coord[d] = 0; 2563d4afb720SToby Isaac for (s = 0, subtotal = 1, nexttotal = 1; c > 0;) { 2564d4afb720SToby Isaac /* subtotal is the number of ways to have a tuple of length c with sum s */ 2565d4afb720SToby Isaac /* nexttotal is the number of ways to have a tuple of length c-1 with sum s */ 2566d4afb720SToby Isaac if ((index + subtotal) >= total) { 2567d4afb720SToby Isaac coord[--c] = sum - s; 2568d4afb720SToby Isaac index -= (total - subtotal); 2569d4afb720SToby Isaac sum = s; 2570d4afb720SToby Isaac total = nexttotal; 2571d4afb720SToby Isaac subtotal = 1; 2572d4afb720SToby Isaac nexttotal = 1; 2573d4afb720SToby Isaac s = 0; 2574d4afb720SToby Isaac } else { 2575d4afb720SToby Isaac subtotal = (subtotal * (c + s)) / (s + 1); 2576d4afb720SToby Isaac nexttotal = (nexttotal * (c - 1 + s)) / (s + 1); 2577d4afb720SToby Isaac s++; 2578d4afb720SToby Isaac } 2579d4afb720SToby Isaac } 2580d4afb720SToby Isaac PetscFunctionReturn(0); 2581d4afb720SToby Isaac } 2582d4afb720SToby Isaac 2583d4afb720SToby Isaac /*@ 2584d4afb720SToby Isaac PetscDTBaryToIndex - convert a barycentric coordinate to an index 2585d4afb720SToby Isaac 2586d4afb720SToby Isaac Input Parameters: 2587d4afb720SToby Isaac + len - the desired length of the barycentric tuple (usually 1 more than the dimension it represents, so a barycentric coordinate in a triangle has length 3) 2588d4afb720SToby Isaac . sum - the value that the sum of the barycentric coordinates (which will be non-negative integers) should sum to 2589d4afb720SToby Isaac - coord - a barycentric coordinate with the given length and sum 2590d4afb720SToby Isaac 2591d4afb720SToby Isaac Output Parameter: 2592d4afb720SToby Isaac . index - the unique index for the coordinate, >= 0 and < Binomial(len - 1 + sum, sum) 2593d4afb720SToby Isaac 2594d4afb720SToby Isaac Level: beginner 2595d4afb720SToby Isaac 2596d4afb720SToby Isaac Note: the indices map to barycentric coordinates in lexicographic order, where the first index is the 2597d4afb720SToby Isaac least significant and the last index is the most significant. 2598d4afb720SToby Isaac 2599d4afb720SToby Isaac .seealso: PetscDTIndexToBary 2600d4afb720SToby Isaac @*/ 2601d4afb720SToby Isaac PetscErrorCode PetscDTBaryToIndex(PetscInt len, PetscInt sum, const PetscInt coord[], PetscInt *index) 2602d4afb720SToby Isaac { 2603d4afb720SToby Isaac PetscInt c; 2604d4afb720SToby Isaac PetscInt i; 2605d4afb720SToby Isaac PetscInt total; 2606d4afb720SToby Isaac 2607d4afb720SToby Isaac PetscFunctionBeginHot; 2608d4afb720SToby Isaac if (len < 0) SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "length must be non-negative"); 2609d4afb720SToby Isaac if (!len) { 2610d4afb720SToby Isaac if (!sum) { 2611d4afb720SToby Isaac *index = 0; 2612d4afb720SToby Isaac PetscFunctionReturn(0); 2613d4afb720SToby Isaac } 2614d4afb720SToby Isaac SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Invalid index or sum for length 0 barycentric coordinate"); 2615d4afb720SToby Isaac } 2616d4afb720SToby Isaac for (c = 1, total = 1; c < len; c++) total = (total * (sum + c)) / c; 2617d4afb720SToby Isaac i = total - 1; 2618d4afb720SToby Isaac c = len - 1; 2619d4afb720SToby Isaac sum -= coord[c]; 2620d4afb720SToby Isaac while (sum > 0) { 2621d4afb720SToby Isaac PetscInt subtotal; 2622d4afb720SToby Isaac PetscInt s; 2623d4afb720SToby Isaac 2624d4afb720SToby Isaac for (s = 1, subtotal = 1; s < sum; s++) subtotal = (subtotal * (c + s)) / s; 2625d4afb720SToby Isaac i -= subtotal; 2626d4afb720SToby Isaac sum -= coord[--c]; 2627d4afb720SToby Isaac } 2628d4afb720SToby Isaac *index = i; 2629d4afb720SToby Isaac PetscFunctionReturn(0); 2630d4afb720SToby Isaac } 2631