1 /* Discretization tools */ 2 3 #include <petscconf.h> 4 #if defined(PETSC_HAVE_MATHIMF_H) 5 #include <mathimf.h> /* this needs to be included before math.h */ 6 #endif 7 #ifdef PETSC_HAVE_MPFR 8 #include <mpfr.h> 9 #endif 10 11 #include <petscdt.h> /*I "petscdt.h" I*/ 12 #include <petscblaslapack.h> 13 #include <petsc/private/petscimpl.h> 14 #include <petsc/private/dtimpl.h> 15 #include <petscviewer.h> 16 #include <petscdmplex.h> 17 #include <petscdmshell.h> 18 19 static PetscBool GaussCite = PETSC_FALSE; 20 const char GaussCitation[] = "@article{GolubWelsch1969,\n" 21 " author = {Golub and Welsch},\n" 22 " title = {Calculation of Quadrature Rules},\n" 23 " journal = {Math. Comp.},\n" 24 " volume = {23},\n" 25 " number = {106},\n" 26 " pages = {221--230},\n" 27 " year = {1969}\n}\n"; 28 29 /*@ 30 PetscQuadratureCreate - Create a PetscQuadrature object 31 32 Collective on MPI_Comm 33 34 Input Parameter: 35 . comm - The communicator for the PetscQuadrature object 36 37 Output Parameter: 38 . q - The PetscQuadrature object 39 40 Level: beginner 41 42 .keywords: PetscQuadrature, quadrature, create 43 .seealso: PetscQuadratureDestroy(), PetscQuadratureGetData() 44 @*/ 45 PetscErrorCode PetscQuadratureCreate(MPI_Comm comm, PetscQuadrature *q) 46 { 47 PetscErrorCode ierr; 48 49 PetscFunctionBegin; 50 PetscValidPointer(q, 2); 51 ierr = PetscSysInitializePackage();CHKERRQ(ierr); 52 ierr = PetscHeaderCreate(*q,PETSC_OBJECT_CLASSID,"PetscQuadrature","Quadrature","DT",comm,PetscQuadratureDestroy,PetscQuadratureView);CHKERRQ(ierr); 53 (*q)->dim = -1; 54 (*q)->Nc = 1; 55 (*q)->order = -1; 56 (*q)->numPoints = 0; 57 (*q)->points = NULL; 58 (*q)->weights = NULL; 59 PetscFunctionReturn(0); 60 } 61 62 /*@ 63 PetscQuadratureDuplicate - Create a deep copy of the PetscQuadrature object 64 65 Collective on PetscQuadrature 66 67 Input Parameter: 68 . q - The PetscQuadrature object 69 70 Output Parameter: 71 . r - The new PetscQuadrature object 72 73 Level: beginner 74 75 .keywords: PetscQuadrature, quadrature, clone 76 .seealso: PetscQuadratureCreate(), PetscQuadratureDestroy(), PetscQuadratureGetData() 77 @*/ 78 PetscErrorCode PetscQuadratureDuplicate(PetscQuadrature q, PetscQuadrature *r) 79 { 80 PetscInt order, dim, Nc, Nq; 81 const PetscReal *points, *weights; 82 PetscReal *p, *w; 83 PetscErrorCode ierr; 84 85 PetscFunctionBegin; 86 PetscValidPointer(q, 2); 87 ierr = PetscQuadratureCreate(PetscObjectComm((PetscObject) q), r);CHKERRQ(ierr); 88 ierr = PetscQuadratureGetOrder(q, &order);CHKERRQ(ierr); 89 ierr = PetscQuadratureSetOrder(*r, order);CHKERRQ(ierr); 90 ierr = PetscQuadratureGetData(q, &dim, &Nc, &Nq, &points, &weights);CHKERRQ(ierr); 91 ierr = PetscMalloc1(Nq*dim, &p);CHKERRQ(ierr); 92 ierr = PetscMalloc1(Nq*Nc, &w);CHKERRQ(ierr); 93 ierr = PetscMemcpy(p, points, Nq*dim * sizeof(PetscReal));CHKERRQ(ierr); 94 ierr = PetscMemcpy(w, weights, Nc * Nq * sizeof(PetscReal));CHKERRQ(ierr); 95 ierr = PetscQuadratureSetData(*r, dim, Nc, Nq, p, w);CHKERRQ(ierr); 96 PetscFunctionReturn(0); 97 } 98 99 /*@ 100 PetscQuadratureDestroy - Destroys a PetscQuadrature object 101 102 Collective on PetscQuadrature 103 104 Input Parameter: 105 . q - The PetscQuadrature object 106 107 Level: beginner 108 109 .keywords: PetscQuadrature, quadrature, destroy 110 .seealso: PetscQuadratureCreate(), PetscQuadratureGetData() 111 @*/ 112 PetscErrorCode PetscQuadratureDestroy(PetscQuadrature *q) 113 { 114 PetscErrorCode ierr; 115 116 PetscFunctionBegin; 117 if (!*q) PetscFunctionReturn(0); 118 PetscValidHeaderSpecific((*q),PETSC_OBJECT_CLASSID,1); 119 if (--((PetscObject)(*q))->refct > 0) { 120 *q = NULL; 121 PetscFunctionReturn(0); 122 } 123 ierr = PetscFree((*q)->points);CHKERRQ(ierr); 124 ierr = PetscFree((*q)->weights);CHKERRQ(ierr); 125 ierr = PetscHeaderDestroy(q);CHKERRQ(ierr); 126 PetscFunctionReturn(0); 127 } 128 129 /*@ 130 PetscQuadratureGetOrder - Return the order of the method 131 132 Not collective 133 134 Input Parameter: 135 . q - The PetscQuadrature object 136 137 Output Parameter: 138 . order - The order of the quadrature, i.e. the highest degree polynomial that is exactly integrated 139 140 Level: intermediate 141 142 .seealso: PetscQuadratureSetOrder(), PetscQuadratureGetData(), PetscQuadratureSetData() 143 @*/ 144 PetscErrorCode PetscQuadratureGetOrder(PetscQuadrature q, PetscInt *order) 145 { 146 PetscFunctionBegin; 147 PetscValidHeaderSpecific(q, PETSC_OBJECT_CLASSID, 1); 148 PetscValidPointer(order, 2); 149 *order = q->order; 150 PetscFunctionReturn(0); 151 } 152 153 /*@ 154 PetscQuadratureSetOrder - Return the order of the method 155 156 Not collective 157 158 Input Parameters: 159 + q - The PetscQuadrature object 160 - order - The order of the quadrature, i.e. the highest degree polynomial that is exactly integrated 161 162 Level: intermediate 163 164 .seealso: PetscQuadratureGetOrder(), PetscQuadratureGetData(), PetscQuadratureSetData() 165 @*/ 166 PetscErrorCode PetscQuadratureSetOrder(PetscQuadrature q, PetscInt order) 167 { 168 PetscFunctionBegin; 169 PetscValidHeaderSpecific(q, PETSC_OBJECT_CLASSID, 1); 170 q->order = order; 171 PetscFunctionReturn(0); 172 } 173 174 /*@ 175 PetscQuadratureGetNumComponents - Return the number of components for functions to be integrated 176 177 Not collective 178 179 Input Parameter: 180 . q - The PetscQuadrature object 181 182 Output Parameter: 183 . Nc - The number of components 184 185 Note: We are performing an integral int f(x) . w(x) dx, where both f and w (the weight) have Nc components. 186 187 Level: intermediate 188 189 .seealso: PetscQuadratureSetNumComponents(), PetscQuadratureGetData(), PetscQuadratureSetData() 190 @*/ 191 PetscErrorCode PetscQuadratureGetNumComponents(PetscQuadrature q, PetscInt *Nc) 192 { 193 PetscFunctionBegin; 194 PetscValidHeaderSpecific(q, PETSC_OBJECT_CLASSID, 1); 195 PetscValidPointer(Nc, 2); 196 *Nc = q->Nc; 197 PetscFunctionReturn(0); 198 } 199 200 /*@ 201 PetscQuadratureSetNumComponents - Return the number of components for functions to be integrated 202 203 Not collective 204 205 Input Parameters: 206 + q - The PetscQuadrature object 207 - Nc - The number of components 208 209 Note: We are performing an integral int f(x) . w(x) dx, where both f and w (the weight) have Nc components. 210 211 Level: intermediate 212 213 .seealso: PetscQuadratureGetNumComponents(), PetscQuadratureGetData(), PetscQuadratureSetData() 214 @*/ 215 PetscErrorCode PetscQuadratureSetNumComponents(PetscQuadrature q, PetscInt Nc) 216 { 217 PetscFunctionBegin; 218 PetscValidHeaderSpecific(q, PETSC_OBJECT_CLASSID, 1); 219 q->Nc = Nc; 220 PetscFunctionReturn(0); 221 } 222 223 /*@C 224 PetscQuadratureGetData - Returns the data defining the quadrature 225 226 Not collective 227 228 Input Parameter: 229 . q - The PetscQuadrature object 230 231 Output Parameters: 232 + dim - The spatial dimension 233 , Nc - The number of components 234 . npoints - The number of quadrature points 235 . points - The coordinates of each quadrature point 236 - weights - The weight of each quadrature point 237 238 Level: intermediate 239 240 .keywords: PetscQuadrature, quadrature 241 .seealso: PetscQuadratureCreate(), PetscQuadratureSetData() 242 @*/ 243 PetscErrorCode PetscQuadratureGetData(PetscQuadrature q, PetscInt *dim, PetscInt *Nc, PetscInt *npoints, const PetscReal *points[], const PetscReal *weights[]) 244 { 245 PetscFunctionBegin; 246 PetscValidHeaderSpecific(q, PETSC_OBJECT_CLASSID, 1); 247 if (dim) { 248 PetscValidPointer(dim, 2); 249 *dim = q->dim; 250 } 251 if (Nc) { 252 PetscValidPointer(Nc, 3); 253 *Nc = q->Nc; 254 } 255 if (npoints) { 256 PetscValidPointer(npoints, 4); 257 *npoints = q->numPoints; 258 } 259 if (points) { 260 PetscValidPointer(points, 5); 261 *points = q->points; 262 } 263 if (weights) { 264 PetscValidPointer(weights, 6); 265 *weights = q->weights; 266 } 267 PetscFunctionReturn(0); 268 } 269 270 /*@C 271 PetscQuadratureSetData - Sets the data defining the quadrature 272 273 Not collective 274 275 Input Parameters: 276 + q - The PetscQuadrature object 277 . dim - The spatial dimension 278 , Nc - The number of components 279 . npoints - The number of quadrature points 280 . points - The coordinates of each quadrature point 281 - weights - The weight of each quadrature point 282 283 Level: intermediate 284 285 .keywords: PetscQuadrature, quadrature 286 .seealso: PetscQuadratureCreate(), PetscQuadratureGetData() 287 @*/ 288 PetscErrorCode PetscQuadratureSetData(PetscQuadrature q, PetscInt dim, PetscInt Nc, PetscInt npoints, const PetscReal points[], const PetscReal weights[]) 289 { 290 PetscFunctionBegin; 291 PetscValidHeaderSpecific(q, PETSC_OBJECT_CLASSID, 1); 292 if (dim >= 0) q->dim = dim; 293 if (Nc >= 0) q->Nc = Nc; 294 if (npoints >= 0) q->numPoints = npoints; 295 if (points) { 296 PetscValidPointer(points, 4); 297 q->points = points; 298 } 299 if (weights) { 300 PetscValidPointer(weights, 5); 301 q->weights = weights; 302 } 303 PetscFunctionReturn(0); 304 } 305 306 /*@C 307 PetscQuadratureView - Views a PetscQuadrature object 308 309 Collective on PetscQuadrature 310 311 Input Parameters: 312 + q - The PetscQuadrature object 313 - viewer - The PetscViewer object 314 315 Level: beginner 316 317 .keywords: PetscQuadrature, quadrature, view 318 .seealso: PetscQuadratureCreate(), PetscQuadratureGetData() 319 @*/ 320 PetscErrorCode PetscQuadratureView(PetscQuadrature quad, PetscViewer viewer) 321 { 322 PetscInt q, d, c; 323 PetscErrorCode ierr; 324 325 PetscFunctionBegin; 326 ierr = PetscObjectPrintClassNamePrefixType((PetscObject)quad,viewer);CHKERRQ(ierr); 327 if (quad->Nc > 1) {ierr = PetscViewerASCIIPrintf(viewer, "Quadrature on %D points with %D components\n (", quad->numPoints, quad->Nc);CHKERRQ(ierr);} 328 else {ierr = PetscViewerASCIIPrintf(viewer, "Quadrature on %D points\n (", quad->numPoints);CHKERRQ(ierr);} 329 for (q = 0; q < quad->numPoints; ++q) { 330 for (d = 0; d < quad->dim; ++d) { 331 if (d) ierr = PetscViewerASCIIPrintf(viewer, ", ");CHKERRQ(ierr); 332 ierr = PetscViewerASCIIPrintf(viewer, "%g\n", (double)quad->points[q*quad->dim+d]);CHKERRQ(ierr); 333 } 334 if (quad->Nc > 1) { 335 ierr = PetscViewerASCIIPrintf(viewer, ") (");CHKERRQ(ierr); 336 for (c = 0; c < quad->Nc; ++c) { 337 if (c) ierr = PetscViewerASCIIPrintf(viewer, ", ");CHKERRQ(ierr); 338 ierr = PetscViewerASCIIPrintf(viewer, "%g", (double)quad->weights[q*quad->Nc+c]);CHKERRQ(ierr); 339 } 340 ierr = PetscViewerASCIIPrintf(viewer, ")\n");CHKERRQ(ierr); 341 } else { 342 ierr = PetscViewerASCIIPrintf(viewer, ") %g\n", (double)quad->weights[q]);CHKERRQ(ierr); 343 } 344 } 345 PetscFunctionReturn(0); 346 } 347 348 /*@C 349 PetscQuadratureExpandComposite - Return a quadrature over the composite element, which has the original quadrature in each subelement 350 351 Not collective 352 353 Input Parameter: 354 + q - The original PetscQuadrature 355 . numSubelements - The number of subelements the original element is divided into 356 . v0 - An array of the initial points for each subelement 357 - jac - An array of the Jacobian mappings from the reference to each subelement 358 359 Output Parameters: 360 . dim - The dimension 361 362 Note: Together v0 and jac define an affine mapping from the original reference element to each subelement 363 364 Level: intermediate 365 366 .seealso: PetscFECreate(), PetscSpaceGetDimension(), PetscDualSpaceGetDimension() 367 @*/ 368 PetscErrorCode PetscQuadratureExpandComposite(PetscQuadrature q, PetscInt numSubelements, const PetscReal v0[], const PetscReal jac[], PetscQuadrature *qref) 369 { 370 const PetscReal *points, *weights; 371 PetscReal *pointsRef, *weightsRef; 372 PetscInt dim, Nc, order, npoints, npointsRef, c, p, cp, d, e; 373 PetscErrorCode ierr; 374 375 PetscFunctionBegin; 376 PetscValidHeaderSpecific(q, PETSC_OBJECT_CLASSID, 1); 377 PetscValidPointer(v0, 3); 378 PetscValidPointer(jac, 4); 379 PetscValidPointer(qref, 5); 380 ierr = PetscQuadratureCreate(PETSC_COMM_SELF, qref);CHKERRQ(ierr); 381 ierr = PetscQuadratureGetOrder(q, &order);CHKERRQ(ierr); 382 ierr = PetscQuadratureGetData(q, &dim, &Nc, &npoints, &points, &weights);CHKERRQ(ierr); 383 npointsRef = npoints*numSubelements; 384 ierr = PetscMalloc1(npointsRef*dim,&pointsRef);CHKERRQ(ierr); 385 ierr = PetscMalloc1(npointsRef*Nc, &weightsRef);CHKERRQ(ierr); 386 for (c = 0; c < numSubelements; ++c) { 387 for (p = 0; p < npoints; ++p) { 388 for (d = 0; d < dim; ++d) { 389 pointsRef[(c*npoints + p)*dim+d] = v0[c*dim+d]; 390 for (e = 0; e < dim; ++e) { 391 pointsRef[(c*npoints + p)*dim+d] += jac[(c*dim + d)*dim+e]*(points[p*dim+e] + 1.0); 392 } 393 } 394 /* Could also use detJ here */ 395 for (cp = 0; cp < Nc; ++cp) weightsRef[(c*npoints+p)*Nc+cp] = weights[p*Nc+cp]/numSubelements; 396 } 397 } 398 ierr = PetscQuadratureSetOrder(*qref, order);CHKERRQ(ierr); 399 ierr = PetscQuadratureSetData(*qref, dim, Nc, npointsRef, pointsRef, weightsRef);CHKERRQ(ierr); 400 PetscFunctionReturn(0); 401 } 402 403 /*@ 404 PetscDTLegendreEval - evaluate Legendre polynomial at points 405 406 Not Collective 407 408 Input Arguments: 409 + npoints - number of spatial points to evaluate at 410 . points - array of locations to evaluate at 411 . ndegree - number of basis degrees to evaluate 412 - degrees - sorted array of degrees to evaluate 413 414 Output Arguments: 415 + B - row-oriented basis evaluation matrix B[point*ndegree + degree] (dimension npoints*ndegrees, allocated by caller) (or NULL) 416 . D - row-oriented derivative evaluation matrix (or NULL) 417 - D2 - row-oriented second derivative evaluation matrix (or NULL) 418 419 Level: intermediate 420 421 .seealso: PetscDTGaussQuadrature() 422 @*/ 423 PetscErrorCode PetscDTLegendreEval(PetscInt npoints,const PetscReal *points,PetscInt ndegree,const PetscInt *degrees,PetscReal *B,PetscReal *D,PetscReal *D2) 424 { 425 PetscInt i,maxdegree; 426 427 PetscFunctionBegin; 428 if (!npoints || !ndegree) PetscFunctionReturn(0); 429 maxdegree = degrees[ndegree-1]; 430 for (i=0; i<npoints; i++) { 431 PetscReal pm1,pm2,pd1,pd2,pdd1,pdd2,x; 432 PetscInt j,k; 433 x = points[i]; 434 pm2 = 0; 435 pm1 = 1; 436 pd2 = 0; 437 pd1 = 0; 438 pdd2 = 0; 439 pdd1 = 0; 440 k = 0; 441 if (degrees[k] == 0) { 442 if (B) B[i*ndegree+k] = pm1; 443 if (D) D[i*ndegree+k] = pd1; 444 if (D2) D2[i*ndegree+k] = pdd1; 445 k++; 446 } 447 for (j=1; j<=maxdegree; j++,k++) { 448 PetscReal p,d,dd; 449 p = ((2*j-1)*x*pm1 - (j-1)*pm2)/j; 450 d = pd2 + (2*j-1)*pm1; 451 dd = pdd2 + (2*j-1)*pd1; 452 pm2 = pm1; 453 pm1 = p; 454 pd2 = pd1; 455 pd1 = d; 456 pdd2 = pdd1; 457 pdd1 = dd; 458 if (degrees[k] == j) { 459 if (B) B[i*ndegree+k] = p; 460 if (D) D[i*ndegree+k] = d; 461 if (D2) D2[i*ndegree+k] = dd; 462 } 463 } 464 } 465 PetscFunctionReturn(0); 466 } 467 468 /*@ 469 PetscDTGaussQuadrature - create Gauss quadrature 470 471 Not Collective 472 473 Input Arguments: 474 + npoints - number of points 475 . a - left end of interval (often-1) 476 - b - right end of interval (often +1) 477 478 Output Arguments: 479 + x - quadrature points 480 - w - quadrature weights 481 482 Level: intermediate 483 484 References: 485 . 1. - Golub and Welsch, Calculation of Quadrature Rules, Math. Comp. 23(106), 1969. 486 487 .seealso: PetscDTLegendreEval() 488 @*/ 489 PetscErrorCode PetscDTGaussQuadrature(PetscInt npoints,PetscReal a,PetscReal b,PetscReal *x,PetscReal *w) 490 { 491 PetscErrorCode ierr; 492 PetscInt i; 493 PetscReal *work; 494 PetscScalar *Z; 495 PetscBLASInt N,LDZ,info; 496 497 PetscFunctionBegin; 498 ierr = PetscCitationsRegister(GaussCitation, &GaussCite);CHKERRQ(ierr); 499 /* Set up the Golub-Welsch system */ 500 for (i=0; i<npoints; i++) { 501 x[i] = 0; /* diagonal is 0 */ 502 if (i) w[i-1] = 0.5 / PetscSqrtReal(1 - 1./PetscSqr(2*i)); 503 } 504 ierr = PetscMalloc2(npoints*npoints,&Z,PetscMax(1,2*npoints-2),&work);CHKERRQ(ierr); 505 ierr = PetscBLASIntCast(npoints,&N);CHKERRQ(ierr); 506 LDZ = N; 507 ierr = PetscFPTrapPush(PETSC_FP_TRAP_OFF);CHKERRQ(ierr); 508 PetscStackCallBLAS("LAPACKsteqr",LAPACKsteqr_("I",&N,x,w,Z,&LDZ,work,&info)); 509 ierr = PetscFPTrapPop();CHKERRQ(ierr); 510 if (info) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"xSTEQR error"); 511 512 for (i=0; i<(npoints+1)/2; i++) { 513 PetscReal y = 0.5 * (-x[i] + x[npoints-i-1]); /* enforces symmetry */ 514 x[i] = (a+b)/2 - y*(b-a)/2; 515 if (x[i] == -0.0) x[i] = 0.0; 516 x[npoints-i-1] = (a+b)/2 + y*(b-a)/2; 517 518 w[i] = w[npoints-1-i] = 0.5*(b-a)*(PetscSqr(PetscAbsScalar(Z[i*npoints])) + PetscSqr(PetscAbsScalar(Z[(npoints-i-1)*npoints]))); 519 } 520 ierr = PetscFree2(Z,work);CHKERRQ(ierr); 521 PetscFunctionReturn(0); 522 } 523 524 /*@ 525 PetscDTGaussTensorQuadrature - creates a tensor-product Gauss quadrature 526 527 Not Collective 528 529 Input Arguments: 530 + dim - The spatial dimension 531 . Nc - The number of components 532 . npoints - number of points in one dimension 533 . a - left end of interval (often-1) 534 - b - right end of interval (often +1) 535 536 Output Argument: 537 . q - A PetscQuadrature object 538 539 Level: intermediate 540 541 .seealso: PetscDTGaussQuadrature(), PetscDTLegendreEval() 542 @*/ 543 PetscErrorCode PetscDTGaussTensorQuadrature(PetscInt dim, PetscInt Nc, PetscInt npoints, PetscReal a, PetscReal b, PetscQuadrature *q) 544 { 545 PetscInt totpoints = dim > 1 ? dim > 2 ? npoints*PetscSqr(npoints) : PetscSqr(npoints) : npoints, i, j, k, c; 546 PetscReal *x, *w, *xw, *ww; 547 PetscErrorCode ierr; 548 549 PetscFunctionBegin; 550 ierr = PetscMalloc1(totpoints*dim,&x);CHKERRQ(ierr); 551 ierr = PetscMalloc1(totpoints*Nc,&w);CHKERRQ(ierr); 552 /* Set up the Golub-Welsch system */ 553 switch (dim) { 554 case 0: 555 ierr = PetscFree(x);CHKERRQ(ierr); 556 ierr = PetscFree(w);CHKERRQ(ierr); 557 ierr = PetscMalloc1(1, &x);CHKERRQ(ierr); 558 ierr = PetscMalloc1(Nc, &w);CHKERRQ(ierr); 559 x[0] = 0.0; 560 for (c = 0; c < Nc; ++c) w[c] = 1.0; 561 break; 562 case 1: 563 ierr = PetscMalloc1(npoints,&ww);CHKERRQ(ierr); 564 ierr = PetscDTGaussQuadrature(npoints, a, b, x, ww);CHKERRQ(ierr); 565 for (i = 0; i < npoints; ++i) for (c = 0; c < Nc; ++c) w[i*Nc+c] = ww[i]; 566 ierr = PetscFree(ww);CHKERRQ(ierr); 567 break; 568 case 2: 569 ierr = PetscMalloc2(npoints,&xw,npoints,&ww);CHKERRQ(ierr); 570 ierr = PetscDTGaussQuadrature(npoints, a, b, xw, ww);CHKERRQ(ierr); 571 for (i = 0; i < npoints; ++i) { 572 for (j = 0; j < npoints; ++j) { 573 x[(i*npoints+j)*dim+0] = xw[i]; 574 x[(i*npoints+j)*dim+1] = xw[j]; 575 for (c = 0; c < Nc; ++c) w[(i*npoints+j)*Nc+c] = ww[i] * ww[j]; 576 } 577 } 578 ierr = PetscFree2(xw,ww);CHKERRQ(ierr); 579 break; 580 case 3: 581 ierr = PetscMalloc2(npoints,&xw,npoints,&ww);CHKERRQ(ierr); 582 ierr = PetscDTGaussQuadrature(npoints, a, b, xw, ww);CHKERRQ(ierr); 583 for (i = 0; i < npoints; ++i) { 584 for (j = 0; j < npoints; ++j) { 585 for (k = 0; k < npoints; ++k) { 586 x[((i*npoints+j)*npoints+k)*dim+0] = xw[i]; 587 x[((i*npoints+j)*npoints+k)*dim+1] = xw[j]; 588 x[((i*npoints+j)*npoints+k)*dim+2] = xw[k]; 589 for (c = 0; c < Nc; ++c) w[((i*npoints+j)*npoints+k)*Nc+c] = ww[i] * ww[j] * ww[k]; 590 } 591 } 592 } 593 ierr = PetscFree2(xw,ww);CHKERRQ(ierr); 594 break; 595 default: 596 SETERRQ1(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Cannot construct quadrature rule for dimension %d", dim); 597 } 598 ierr = PetscQuadratureCreate(PETSC_COMM_SELF, q);CHKERRQ(ierr); 599 ierr = PetscQuadratureSetOrder(*q, npoints-1);CHKERRQ(ierr); 600 ierr = PetscQuadratureSetData(*q, dim, Nc, totpoints, x, w);CHKERRQ(ierr); 601 PetscFunctionReturn(0); 602 } 603 604 /* Evaluates the nth jacobi polynomial with weight parameters a,b at a point x. 605 Recurrence relations implemented from the pseudocode given in Karniadakis and Sherwin, Appendix B */ 606 PETSC_STATIC_INLINE PetscErrorCode PetscDTFactorial_Internal(PetscInt n, PetscReal *factorial) 607 { 608 PetscReal f = 1.0; 609 PetscInt i; 610 611 PetscFunctionBegin; 612 for (i = 1; i < n+1; ++i) f *= i; 613 *factorial = f; 614 PetscFunctionReturn(0); 615 } 616 617 /* Evaluates the nth jacobi polynomial with weight parameters a,b at a point x. 618 Recurrence relations implemented from the pseudocode given in Karniadakis and Sherwin, Appendix B */ 619 PETSC_STATIC_INLINE PetscErrorCode PetscDTComputeJacobi(PetscReal a, PetscReal b, PetscInt n, PetscReal x, PetscReal *P) 620 { 621 PetscReal apb, pn1, pn2; 622 PetscInt k; 623 624 PetscFunctionBegin; 625 if (!n) {*P = 1.0; PetscFunctionReturn(0);} 626 if (n == 1) {*P = 0.5 * (a - b + (a + b + 2.0) * x); PetscFunctionReturn(0);} 627 apb = a + b; 628 pn2 = 1.0; 629 pn1 = 0.5 * (a - b + (apb + 2.0) * x); 630 *P = 0.0; 631 for (k = 2; k < n+1; ++k) { 632 PetscReal a1 = 2.0 * k * (k + apb) * (2.0*k + apb - 2.0); 633 PetscReal a2 = (2.0 * k + apb - 1.0) * (a*a - b*b); 634 PetscReal a3 = (2.0 * k + apb - 2.0) * (2.0 * k + apb - 1.0) * (2.0 * k + apb); 635 PetscReal a4 = 2.0 * (k + a - 1.0) * (k + b - 1.0) * (2.0 * k + apb); 636 637 a2 = a2 / a1; 638 a3 = a3 / a1; 639 a4 = a4 / a1; 640 *P = (a2 + a3 * x) * pn1 - a4 * pn2; 641 pn2 = pn1; 642 pn1 = *P; 643 } 644 PetscFunctionReturn(0); 645 } 646 647 /* Evaluates the first derivative of P_{n}^{a,b} at a point x. */ 648 PETSC_STATIC_INLINE PetscErrorCode PetscDTComputeJacobiDerivative(PetscReal a, PetscReal b, PetscInt n, PetscReal x, PetscReal *P) 649 { 650 PetscReal nP; 651 PetscErrorCode ierr; 652 653 PetscFunctionBegin; 654 if (!n) {*P = 0.0; PetscFunctionReturn(0);} 655 ierr = PetscDTComputeJacobi(a+1, b+1, n-1, x, &nP);CHKERRQ(ierr); 656 *P = 0.5 * (a + b + n + 1) * nP; 657 PetscFunctionReturn(0); 658 } 659 660 /* Maps from [-1,1]^2 to the (-1,1) reference triangle */ 661 PETSC_STATIC_INLINE PetscErrorCode PetscDTMapSquareToTriangle_Internal(PetscReal x, PetscReal y, PetscReal *xi, PetscReal *eta) 662 { 663 PetscFunctionBegin; 664 *xi = 0.5 * (1.0 + x) * (1.0 - y) - 1.0; 665 *eta = y; 666 PetscFunctionReturn(0); 667 } 668 669 /* Maps from [-1,1]^2 to the (-1,1) reference triangle */ 670 PETSC_STATIC_INLINE PetscErrorCode PetscDTMapCubeToTetrahedron_Internal(PetscReal x, PetscReal y, PetscReal z, PetscReal *xi, PetscReal *eta, PetscReal *zeta) 671 { 672 PetscFunctionBegin; 673 *xi = 0.25 * (1.0 + x) * (1.0 - y) * (1.0 - z) - 1.0; 674 *eta = 0.5 * (1.0 + y) * (1.0 - z) - 1.0; 675 *zeta = z; 676 PetscFunctionReturn(0); 677 } 678 679 static PetscErrorCode PetscDTGaussJacobiQuadrature1D_Internal(PetscInt npoints, PetscReal a, PetscReal b, PetscReal *x, PetscReal *w) 680 { 681 PetscInt maxIter = 100; 682 PetscReal eps = 1.0e-8; 683 PetscReal a1, a2, a3, a4, a5, a6; 684 PetscInt k; 685 PetscErrorCode ierr; 686 687 PetscFunctionBegin; 688 689 a1 = PetscPowReal(2.0, a+b+1); 690 #if defined(PETSC_HAVE_TGAMMA) 691 a2 = PetscTGamma(a + npoints + 1); 692 a3 = PetscTGamma(b + npoints + 1); 693 a4 = PetscTGamma(a + b + npoints + 1); 694 #else 695 { 696 PetscInt ia, ib; 697 698 ia = (PetscInt) a; 699 ib = (PetscInt) b; 700 if (ia == a && ib == b && ia + npoints + 1 > 0 && ib + npoints + 1 > 0 && ia + ib + npoints + 1 > 0) { /* All gamma(x) terms are (x-1)! terms */ 701 ierr = PetscDTFactorial_Internal(ia + npoints, &a2);CHKERRQ(ierr); 702 ierr = PetscDTFactorial_Internal(ib + npoints, &a3);CHKERRQ(ierr); 703 ierr = PetscDTFactorial_Internal(ia + ib + npoints, &a4);CHKERRQ(ierr); 704 } else { 705 SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"tgamma() - math routine is unavailable."); 706 } 707 } 708 #endif 709 710 ierr = PetscDTFactorial_Internal(npoints, &a5);CHKERRQ(ierr); 711 a6 = a1 * a2 * a3 / a4 / a5; 712 /* Computes the m roots of P_{m}^{a,b} on [-1,1] by Newton's method with Chebyshev points as initial guesses. 713 Algorithm implemented from the pseudocode given by Karniadakis and Sherwin and Python in FIAT */ 714 for (k = 0; k < npoints; ++k) { 715 PetscReal r = -PetscCosReal((2.0*k + 1.0) * PETSC_PI / (2.0 * npoints)), dP; 716 PetscInt j; 717 718 if (k > 0) r = 0.5 * (r + x[k-1]); 719 for (j = 0; j < maxIter; ++j) { 720 PetscReal s = 0.0, delta, f, fp; 721 PetscInt i; 722 723 for (i = 0; i < k; ++i) s = s + 1.0 / (r - x[i]); 724 ierr = PetscDTComputeJacobi(a, b, npoints, r, &f);CHKERRQ(ierr); 725 ierr = PetscDTComputeJacobiDerivative(a, b, npoints, r, &fp);CHKERRQ(ierr); 726 delta = f / (fp - f * s); 727 r = r - delta; 728 if (PetscAbsReal(delta) < eps) break; 729 } 730 x[k] = r; 731 ierr = PetscDTComputeJacobiDerivative(a, b, npoints, x[k], &dP);CHKERRQ(ierr); 732 w[k] = a6 / (1.0 - PetscSqr(x[k])) / PetscSqr(dP); 733 } 734 PetscFunctionReturn(0); 735 } 736 737 /*@C 738 PetscDTGaussJacobiQuadrature - create Gauss-Jacobi quadrature for a simplex 739 740 Not Collective 741 742 Input Arguments: 743 + dim - The simplex dimension 744 . Nc - The number of components 745 . npoints - The number of points in one dimension 746 . a - left end of interval (often-1) 747 - b - right end of interval (often +1) 748 749 Output Argument: 750 . q - A PetscQuadrature object 751 752 Level: intermediate 753 754 References: 755 . 1. - Karniadakis and Sherwin. FIAT 756 757 .seealso: PetscDTGaussTensorQuadrature(), PetscDTGaussQuadrature() 758 @*/ 759 PetscErrorCode PetscDTGaussJacobiQuadrature(PetscInt dim, PetscInt Nc, PetscInt npoints, PetscReal a, PetscReal b, PetscQuadrature *q) 760 { 761 PetscInt totpoints = dim > 1 ? dim > 2 ? npoints*PetscSqr(npoints) : PetscSqr(npoints) : npoints; 762 PetscReal *px, *wx, *py, *wy, *pz, *wz, *x, *w; 763 PetscInt i, j, k, c; 764 PetscErrorCode ierr; 765 766 PetscFunctionBegin; 767 if ((a != -1.0) || (b != 1.0)) SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Must use default internal right now"); 768 ierr = PetscMalloc1(totpoints*dim, &x);CHKERRQ(ierr); 769 ierr = PetscMalloc1(totpoints*Nc, &w);CHKERRQ(ierr); 770 switch (dim) { 771 case 0: 772 ierr = PetscFree(x);CHKERRQ(ierr); 773 ierr = PetscFree(w);CHKERRQ(ierr); 774 ierr = PetscMalloc1(1, &x);CHKERRQ(ierr); 775 ierr = PetscMalloc1(Nc, &w);CHKERRQ(ierr); 776 x[0] = 0.0; 777 for (c = 0; c < Nc; ++c) w[c] = 1.0; 778 break; 779 case 1: 780 ierr = PetscMalloc1(npoints,&wx);CHKERRQ(ierr); 781 ierr = PetscDTGaussJacobiQuadrature1D_Internal(npoints, 0.0, 0.0, x, wx);CHKERRQ(ierr); 782 for (i = 0; i < npoints; ++i) for (c = 0; c < Nc; ++c) w[i*Nc+c] = wx[i]; 783 ierr = PetscFree(wx);CHKERRQ(ierr); 784 break; 785 case 2: 786 ierr = PetscMalloc4(npoints,&px,npoints,&wx,npoints,&py,npoints,&wy);CHKERRQ(ierr); 787 ierr = PetscDTGaussJacobiQuadrature1D_Internal(npoints, 0.0, 0.0, px, wx);CHKERRQ(ierr); 788 ierr = PetscDTGaussJacobiQuadrature1D_Internal(npoints, 1.0, 0.0, py, wy);CHKERRQ(ierr); 789 for (i = 0; i < npoints; ++i) { 790 for (j = 0; j < npoints; ++j) { 791 ierr = PetscDTMapSquareToTriangle_Internal(px[i], py[j], &x[(i*npoints+j)*2+0], &x[(i*npoints+j)*2+1]);CHKERRQ(ierr); 792 for (c = 0; c < Nc; ++c) w[(i*npoints+j)*Nc+c] = 0.5 * wx[i] * wy[j]; 793 } 794 } 795 ierr = PetscFree4(px,wx,py,wy);CHKERRQ(ierr); 796 break; 797 case 3: 798 ierr = PetscMalloc6(npoints,&px,npoints,&wx,npoints,&py,npoints,&wy,npoints,&pz,npoints,&wz);CHKERRQ(ierr); 799 ierr = PetscDTGaussJacobiQuadrature1D_Internal(npoints, 0.0, 0.0, px, wx);CHKERRQ(ierr); 800 ierr = PetscDTGaussJacobiQuadrature1D_Internal(npoints, 1.0, 0.0, py, wy);CHKERRQ(ierr); 801 ierr = PetscDTGaussJacobiQuadrature1D_Internal(npoints, 2.0, 0.0, pz, wz);CHKERRQ(ierr); 802 for (i = 0; i < npoints; ++i) { 803 for (j = 0; j < npoints; ++j) { 804 for (k = 0; k < npoints; ++k) { 805 ierr = PetscDTMapCubeToTetrahedron_Internal(px[i], py[j], pz[k], &x[((i*npoints+j)*npoints+k)*3+0], &x[((i*npoints+j)*npoints+k)*3+1], &x[((i*npoints+j)*npoints+k)*3+2]);CHKERRQ(ierr); 806 for (c = 0; c < Nc; ++c) w[((i*npoints+j)*npoints+k)*Nc+c] = 0.125 * wx[i] * wy[j] * wz[k]; 807 } 808 } 809 } 810 ierr = PetscFree6(px,wx,py,wy,pz,wz);CHKERRQ(ierr); 811 break; 812 default: 813 SETERRQ1(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Cannot construct quadrature rule for dimension %d", dim); 814 } 815 ierr = PetscQuadratureCreate(PETSC_COMM_SELF, q);CHKERRQ(ierr); 816 ierr = PetscQuadratureSetOrder(*q, npoints-1);CHKERRQ(ierr); 817 ierr = PetscQuadratureSetData(*q, dim, Nc, totpoints, x, w);CHKERRQ(ierr); 818 PetscFunctionReturn(0); 819 } 820 821 /*@C 822 PetscDTTanhSinhTensorQuadrature - create tanh-sinh quadrature for a tensor product cell 823 824 Not Collective 825 826 Input Arguments: 827 + dim - The cell dimension 828 . level - The number of points in one dimension, 2^l 829 . a - left end of interval (often-1) 830 - b - right end of interval (often +1) 831 832 Output Argument: 833 . q - A PetscQuadrature object 834 835 Level: intermediate 836 837 .seealso: PetscDTGaussTensorQuadrature() 838 @*/ 839 PetscErrorCode PetscDTTanhSinhTensorQuadrature(PetscInt dim, PetscInt level, PetscReal a, PetscReal b, PetscQuadrature *q) 840 { 841 const PetscInt p = 16; /* Digits of precision in the evaluation */ 842 const PetscReal alpha = (b-a)/2.; /* Half-width of the integration interval */ 843 const PetscReal beta = (b+a)/2.; /* Center of the integration interval */ 844 const PetscReal h = PetscPowReal(2.0, -level); /* Step size, length between x_k */ 845 PetscReal xk; /* Quadrature point x_k on reference domain [-1, 1] */ 846 PetscReal wk = 0.5*PETSC_PI; /* Quadrature weight at x_k */ 847 PetscReal *x, *w; 848 PetscInt K, k, npoints; 849 PetscErrorCode ierr; 850 851 PetscFunctionBegin; 852 if (dim > 1) SETERRQ1(PETSC_COMM_SELF, PETSC_ERR_SUP, "Dimension %d not yet implemented", dim); 853 if (!level) SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Must give a number of significant digits"); 854 /* Find K such that the weights are < 32 digits of precision */ 855 for (K = 1; PetscAbsReal(PetscLog10Real(wk)) < 2*p; ++K) { 856 wk = 0.5*h*PETSC_PI*PetscCoshReal(K*h)/PetscSqr(PetscCoshReal(0.5*PETSC_PI*PetscSinhReal(K*h))); 857 } 858 ierr = PetscQuadratureCreate(PETSC_COMM_SELF, q);CHKERRQ(ierr); 859 ierr = PetscQuadratureSetOrder(*q, 2*K+1);CHKERRQ(ierr); 860 npoints = 2*K-1; 861 ierr = PetscMalloc1(npoints*dim, &x);CHKERRQ(ierr); 862 ierr = PetscMalloc1(npoints, &w);CHKERRQ(ierr); 863 /* Center term */ 864 x[0] = beta; 865 w[0] = 0.5*alpha*PETSC_PI; 866 for (k = 1; k < K; ++k) { 867 wk = 0.5*alpha*h*PETSC_PI*PetscCoshReal(k*h)/PetscSqr(PetscCoshReal(0.5*PETSC_PI*PetscSinhReal(k*h))); 868 xk = PetscTanhReal(0.5*PETSC_PI*PetscSinhReal(k*h)); 869 x[2*k-1] = -alpha*xk+beta; 870 w[2*k-1] = wk; 871 x[2*k+0] = alpha*xk+beta; 872 w[2*k+0] = wk; 873 } 874 ierr = PetscQuadratureSetData(*q, dim, 1, npoints, x, w);CHKERRQ(ierr); 875 PetscFunctionReturn(0); 876 } 877 878 PetscErrorCode PetscDTTanhSinhIntegrate(void (*func)(PetscReal, PetscReal *), PetscReal a, PetscReal b, PetscInt digits, PetscReal *sol) 879 { 880 const PetscInt p = 16; /* Digits of precision in the evaluation */ 881 const PetscReal alpha = (b-a)/2.; /* Half-width of the integration interval */ 882 const PetscReal beta = (b+a)/2.; /* Center of the integration interval */ 883 PetscReal h = 1.0; /* Step size, length between x_k */ 884 PetscInt l = 0; /* Level of refinement, h = 2^{-l} */ 885 PetscReal osum = 0.0; /* Integral on last level */ 886 PetscReal psum = 0.0; /* Integral on the level before the last level */ 887 PetscReal sum; /* Integral on current level */ 888 PetscReal yk; /* Quadrature point 1 - x_k on reference domain [-1, 1] */ 889 PetscReal lx, rx; /* Quadrature points to the left and right of 0 on the real domain [a, b] */ 890 PetscReal wk; /* Quadrature weight at x_k */ 891 PetscReal lval, rval; /* Terms in the quadature sum to the left and right of 0 */ 892 PetscInt d; /* Digits of precision in the integral */ 893 894 PetscFunctionBegin; 895 if (digits <= 0) SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Must give a positive number of significant digits"); 896 /* Center term */ 897 func(beta, &lval); 898 sum = 0.5*alpha*PETSC_PI*lval; 899 /* */ 900 do { 901 PetscReal lterm, rterm, maxTerm = 0.0, d1, d2, d3, d4; 902 PetscInt k = 1; 903 904 ++l; 905 /* PetscPrintf(PETSC_COMM_SELF, "LEVEL %D sum: %15.15f\n", l, sum); */ 906 /* At each level of refinement, h --> h/2 and sum --> sum/2 */ 907 psum = osum; 908 osum = sum; 909 h *= 0.5; 910 sum *= 0.5; 911 do { 912 wk = 0.5*h*PETSC_PI*PetscCoshReal(k*h)/PetscSqr(PetscCoshReal(0.5*PETSC_PI*PetscSinhReal(k*h))); 913 yk = 1.0/(PetscExpReal(0.5*PETSC_PI*PetscSinhReal(k*h)) * PetscCoshReal(0.5*PETSC_PI*PetscSinhReal(k*h))); 914 lx = -alpha*(1.0 - yk)+beta; 915 rx = alpha*(1.0 - yk)+beta; 916 func(lx, &lval); 917 func(rx, &rval); 918 lterm = alpha*wk*lval; 919 maxTerm = PetscMax(PetscAbsReal(lterm), maxTerm); 920 sum += lterm; 921 rterm = alpha*wk*rval; 922 maxTerm = PetscMax(PetscAbsReal(rterm), maxTerm); 923 sum += rterm; 924 ++k; 925 /* Only need to evaluate every other point on refined levels */ 926 if (l != 1) ++k; 927 } while (PetscAbsReal(PetscLog10Real(wk)) < p); /* Only need to evaluate sum until weights are < 32 digits of precision */ 928 929 d1 = PetscLog10Real(PetscAbsReal(sum - osum)); 930 d2 = PetscLog10Real(PetscAbsReal(sum - psum)); 931 d3 = PetscLog10Real(maxTerm) - p; 932 if (PetscMax(PetscAbsReal(lterm), PetscAbsReal(rterm)) == 0.0) d4 = 0.0; 933 else d4 = PetscLog10Real(PetscMax(PetscAbsReal(lterm), PetscAbsReal(rterm))); 934 d = PetscAbsInt(PetscMin(0, PetscMax(PetscMax(PetscMax(PetscSqr(d1)/d2, 2*d1), d3), d4))); 935 } while (d < digits && l < 12); 936 *sol = sum; 937 938 PetscFunctionReturn(0); 939 } 940 941 #ifdef PETSC_HAVE_MPFR 942 PetscErrorCode PetscDTTanhSinhIntegrateMPFR(void (*func)(PetscReal, PetscReal *), PetscReal a, PetscReal b, PetscInt digits, PetscReal *sol) 943 { 944 const PetscInt safetyFactor = 2; /* Calculate abcissa until 2*p digits */ 945 PetscInt l = 0; /* Level of refinement, h = 2^{-l} */ 946 mpfr_t alpha; /* Half-width of the integration interval */ 947 mpfr_t beta; /* Center of the integration interval */ 948 mpfr_t h; /* Step size, length between x_k */ 949 mpfr_t osum; /* Integral on last level */ 950 mpfr_t psum; /* Integral on the level before the last level */ 951 mpfr_t sum; /* Integral on current level */ 952 mpfr_t yk; /* Quadrature point 1 - x_k on reference domain [-1, 1] */ 953 mpfr_t lx, rx; /* Quadrature points to the left and right of 0 on the real domain [a, b] */ 954 mpfr_t wk; /* Quadrature weight at x_k */ 955 PetscReal lval, rval; /* Terms in the quadature sum to the left and right of 0 */ 956 PetscInt d; /* Digits of precision in the integral */ 957 mpfr_t pi2, kh, msinh, mcosh, maxTerm, curTerm, tmp; 958 959 PetscFunctionBegin; 960 if (digits <= 0) SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Must give a positive number of significant digits"); 961 /* Create high precision storage */ 962 mpfr_inits2(PetscCeilReal(safetyFactor*digits*PetscLogReal(10.)/PetscLogReal(2.)), alpha, beta, h, sum, osum, psum, yk, wk, lx, rx, tmp, maxTerm, curTerm, pi2, kh, msinh, mcosh, NULL); 963 /* Initialization */ 964 mpfr_set_d(alpha, 0.5*(b-a), MPFR_RNDN); 965 mpfr_set_d(beta, 0.5*(b+a), MPFR_RNDN); 966 mpfr_set_d(osum, 0.0, MPFR_RNDN); 967 mpfr_set_d(psum, 0.0, MPFR_RNDN); 968 mpfr_set_d(h, 1.0, MPFR_RNDN); 969 mpfr_const_pi(pi2, MPFR_RNDN); 970 mpfr_mul_d(pi2, pi2, 0.5, MPFR_RNDN); 971 /* Center term */ 972 func(0.5*(b+a), &lval); 973 mpfr_set(sum, pi2, MPFR_RNDN); 974 mpfr_mul(sum, sum, alpha, MPFR_RNDN); 975 mpfr_mul_d(sum, sum, lval, MPFR_RNDN); 976 /* */ 977 do { 978 PetscReal d1, d2, d3, d4; 979 PetscInt k = 1; 980 981 ++l; 982 mpfr_set_d(maxTerm, 0.0, MPFR_RNDN); 983 /* PetscPrintf(PETSC_COMM_SELF, "LEVEL %D sum: %15.15f\n", l, sum); */ 984 /* At each level of refinement, h --> h/2 and sum --> sum/2 */ 985 mpfr_set(psum, osum, MPFR_RNDN); 986 mpfr_set(osum, sum, MPFR_RNDN); 987 mpfr_mul_d(h, h, 0.5, MPFR_RNDN); 988 mpfr_mul_d(sum, sum, 0.5, MPFR_RNDN); 989 do { 990 mpfr_set_si(kh, k, MPFR_RNDN); 991 mpfr_mul(kh, kh, h, MPFR_RNDN); 992 /* Weight */ 993 mpfr_set(wk, h, MPFR_RNDN); 994 mpfr_sinh_cosh(msinh, mcosh, kh, MPFR_RNDN); 995 mpfr_mul(msinh, msinh, pi2, MPFR_RNDN); 996 mpfr_mul(mcosh, mcosh, pi2, MPFR_RNDN); 997 mpfr_cosh(tmp, msinh, MPFR_RNDN); 998 mpfr_sqr(tmp, tmp, MPFR_RNDN); 999 mpfr_mul(wk, wk, mcosh, MPFR_RNDN); 1000 mpfr_div(wk, wk, tmp, MPFR_RNDN); 1001 /* Abscissa */ 1002 mpfr_set_d(yk, 1.0, MPFR_RNDZ); 1003 mpfr_cosh(tmp, msinh, MPFR_RNDN); 1004 mpfr_div(yk, yk, tmp, MPFR_RNDZ); 1005 mpfr_exp(tmp, msinh, MPFR_RNDN); 1006 mpfr_div(yk, yk, tmp, MPFR_RNDZ); 1007 /* Quadrature points */ 1008 mpfr_sub_d(lx, yk, 1.0, MPFR_RNDZ); 1009 mpfr_mul(lx, lx, alpha, MPFR_RNDU); 1010 mpfr_add(lx, lx, beta, MPFR_RNDU); 1011 mpfr_d_sub(rx, 1.0, yk, MPFR_RNDZ); 1012 mpfr_mul(rx, rx, alpha, MPFR_RNDD); 1013 mpfr_add(rx, rx, beta, MPFR_RNDD); 1014 /* Evaluation */ 1015 func(mpfr_get_d(lx, MPFR_RNDU), &lval); 1016 func(mpfr_get_d(rx, MPFR_RNDD), &rval); 1017 /* Update */ 1018 mpfr_mul(tmp, wk, alpha, MPFR_RNDN); 1019 mpfr_mul_d(tmp, tmp, lval, MPFR_RNDN); 1020 mpfr_add(sum, sum, tmp, MPFR_RNDN); 1021 mpfr_abs(tmp, tmp, MPFR_RNDN); 1022 mpfr_max(maxTerm, maxTerm, tmp, MPFR_RNDN); 1023 mpfr_set(curTerm, tmp, MPFR_RNDN); 1024 mpfr_mul(tmp, wk, alpha, MPFR_RNDN); 1025 mpfr_mul_d(tmp, tmp, rval, MPFR_RNDN); 1026 mpfr_add(sum, sum, tmp, MPFR_RNDN); 1027 mpfr_abs(tmp, tmp, MPFR_RNDN); 1028 mpfr_max(maxTerm, maxTerm, tmp, MPFR_RNDN); 1029 mpfr_max(curTerm, curTerm, tmp, MPFR_RNDN); 1030 ++k; 1031 /* Only need to evaluate every other point on refined levels */ 1032 if (l != 1) ++k; 1033 mpfr_log10(tmp, wk, MPFR_RNDN); 1034 mpfr_abs(tmp, tmp, MPFR_RNDN); 1035 } while (mpfr_get_d(tmp, MPFR_RNDN) < safetyFactor*digits); /* Only need to evaluate sum until weights are < 32 digits of precision */ 1036 mpfr_sub(tmp, sum, osum, MPFR_RNDN); 1037 mpfr_abs(tmp, tmp, MPFR_RNDN); 1038 mpfr_log10(tmp, tmp, MPFR_RNDN); 1039 d1 = mpfr_get_d(tmp, MPFR_RNDN); 1040 mpfr_sub(tmp, sum, psum, MPFR_RNDN); 1041 mpfr_abs(tmp, tmp, MPFR_RNDN); 1042 mpfr_log10(tmp, tmp, MPFR_RNDN); 1043 d2 = mpfr_get_d(tmp, MPFR_RNDN); 1044 mpfr_log10(tmp, maxTerm, MPFR_RNDN); 1045 d3 = mpfr_get_d(tmp, MPFR_RNDN) - digits; 1046 mpfr_log10(tmp, curTerm, MPFR_RNDN); 1047 d4 = mpfr_get_d(tmp, MPFR_RNDN); 1048 d = PetscAbsInt(PetscMin(0, PetscMax(PetscMax(PetscMax(PetscSqr(d1)/d2, 2*d1), d3), d4))); 1049 } while (d < digits && l < 8); 1050 *sol = mpfr_get_d(sum, MPFR_RNDN); 1051 /* Cleanup */ 1052 mpfr_clears(alpha, beta, h, sum, osum, psum, yk, wk, lx, rx, tmp, maxTerm, curTerm, pi2, kh, msinh, mcosh, NULL); 1053 PetscFunctionReturn(0); 1054 } 1055 #else 1056 1057 PetscErrorCode PetscDTTanhSinhIntegrateMPFR(void (*func)(PetscReal, PetscReal *), PetscReal a, PetscReal b, PetscInt digits, PetscReal *sol) 1058 { 1059 SETERRQ(PETSC_COMM_SELF, PETSC_ERR_SUP, "This method will not work without MPFR. Reconfigure using --download-mpfr --download-gmp"); 1060 } 1061 #endif 1062 1063 /* Overwrites A. Can only handle full-rank problems with m>=n 1064 * A in column-major format 1065 * Ainv in row-major format 1066 * tau has length m 1067 * worksize must be >= max(1,n) 1068 */ 1069 static PetscErrorCode PetscDTPseudoInverseQR(PetscInt m,PetscInt mstride,PetscInt n,PetscReal *A_in,PetscReal *Ainv_out,PetscScalar *tau,PetscInt worksize,PetscScalar *work) 1070 { 1071 PetscErrorCode ierr; 1072 PetscBLASInt M,N,K,lda,ldb,ldwork,info; 1073 PetscScalar *A,*Ainv,*R,*Q,Alpha; 1074 1075 PetscFunctionBegin; 1076 #if defined(PETSC_USE_COMPLEX) 1077 { 1078 PetscInt i,j; 1079 ierr = PetscMalloc2(m*n,&A,m*n,&Ainv);CHKERRQ(ierr); 1080 for (j=0; j<n; j++) { 1081 for (i=0; i<m; i++) A[i+m*j] = A_in[i+mstride*j]; 1082 } 1083 mstride = m; 1084 } 1085 #else 1086 A = A_in; 1087 Ainv = Ainv_out; 1088 #endif 1089 1090 ierr = PetscBLASIntCast(m,&M);CHKERRQ(ierr); 1091 ierr = PetscBLASIntCast(n,&N);CHKERRQ(ierr); 1092 ierr = PetscBLASIntCast(mstride,&lda);CHKERRQ(ierr); 1093 ierr = PetscBLASIntCast(worksize,&ldwork);CHKERRQ(ierr); 1094 ierr = PetscFPTrapPush(PETSC_FP_TRAP_OFF);CHKERRQ(ierr); 1095 PetscStackCallBLAS("LAPACKgeqrf",LAPACKgeqrf_(&M,&N,A,&lda,tau,work,&ldwork,&info)); 1096 ierr = PetscFPTrapPop();CHKERRQ(ierr); 1097 if (info) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_LIB,"xGEQRF error"); 1098 R = A; /* Upper triangular part of A now contains R, the rest contains the elementary reflectors */ 1099 1100 /* Extract an explicit representation of Q */ 1101 Q = Ainv; 1102 ierr = PetscMemcpy(Q,A,mstride*n*sizeof(PetscScalar));CHKERRQ(ierr); 1103 K = N; /* full rank */ 1104 PetscStackCallBLAS("LAPACKungqr",LAPACKungqr_(&M,&N,&K,Q,&lda,tau,work,&ldwork,&info)); 1105 if (info) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_LIB,"xORGQR/xUNGQR error"); 1106 1107 /* Compute A^{-T} = (R^{-1} Q^T)^T = Q R^{-T} */ 1108 Alpha = 1.0; 1109 ldb = lda; 1110 PetscStackCallBLAS("BLAStrsm",BLAStrsm_("Right","Upper","ConjugateTranspose","NotUnitTriangular",&M,&N,&Alpha,R,&lda,Q,&ldb)); 1111 /* Ainv is Q, overwritten with inverse */ 1112 1113 #if defined(PETSC_USE_COMPLEX) 1114 { 1115 PetscInt i; 1116 for (i=0; i<m*n; i++) Ainv_out[i] = PetscRealPart(Ainv[i]); 1117 ierr = PetscFree2(A,Ainv);CHKERRQ(ierr); 1118 } 1119 #endif 1120 PetscFunctionReturn(0); 1121 } 1122 1123 /* Computes integral of L_p' over intervals {(x0,x1),(x1,x2),...} */ 1124 static PetscErrorCode PetscDTLegendreIntegrate(PetscInt ninterval,const PetscReal *x,PetscInt ndegree,const PetscInt *degrees,PetscBool Transpose,PetscReal *B) 1125 { 1126 PetscErrorCode ierr; 1127 PetscReal *Bv; 1128 PetscInt i,j; 1129 1130 PetscFunctionBegin; 1131 ierr = PetscMalloc1((ninterval+1)*ndegree,&Bv);CHKERRQ(ierr); 1132 /* Point evaluation of L_p on all the source vertices */ 1133 ierr = PetscDTLegendreEval(ninterval+1,x,ndegree,degrees,Bv,NULL,NULL);CHKERRQ(ierr); 1134 /* Integral over each interval: \int_a^b L_p' = L_p(b)-L_p(a) */ 1135 for (i=0; i<ninterval; i++) { 1136 for (j=0; j<ndegree; j++) { 1137 if (Transpose) B[i+ninterval*j] = Bv[(i+1)*ndegree+j] - Bv[i*ndegree+j]; 1138 else B[i*ndegree+j] = Bv[(i+1)*ndegree+j] - Bv[i*ndegree+j]; 1139 } 1140 } 1141 ierr = PetscFree(Bv);CHKERRQ(ierr); 1142 PetscFunctionReturn(0); 1143 } 1144 1145 /*@ 1146 PetscDTReconstructPoly - create matrix representing polynomial reconstruction using cell intervals and evaluation at target intervals 1147 1148 Not Collective 1149 1150 Input Arguments: 1151 + degree - degree of reconstruction polynomial 1152 . nsource - number of source intervals 1153 . sourcex - sorted coordinates of source cell boundaries (length nsource+1) 1154 . ntarget - number of target intervals 1155 - targetx - sorted coordinates of target cell boundaries (length ntarget+1) 1156 1157 Output Arguments: 1158 . R - reconstruction matrix, utarget = sum_s R[t*nsource+s] * usource[s] 1159 1160 Level: advanced 1161 1162 .seealso: PetscDTLegendreEval() 1163 @*/ 1164 PetscErrorCode PetscDTReconstructPoly(PetscInt degree,PetscInt nsource,const PetscReal *sourcex,PetscInt ntarget,const PetscReal *targetx,PetscReal *R) 1165 { 1166 PetscErrorCode ierr; 1167 PetscInt i,j,k,*bdegrees,worksize; 1168 PetscReal xmin,xmax,center,hscale,*sourcey,*targety,*Bsource,*Bsinv,*Btarget; 1169 PetscScalar *tau,*work; 1170 1171 PetscFunctionBegin; 1172 PetscValidRealPointer(sourcex,3); 1173 PetscValidRealPointer(targetx,5); 1174 PetscValidRealPointer(R,6); 1175 if (degree >= nsource) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"Reconstruction degree %D must be less than number of source intervals %D",degree,nsource); 1176 #if defined(PETSC_USE_DEBUG) 1177 for (i=0; i<nsource; i++) { 1178 if (sourcex[i] >= sourcex[i+1]) SETERRQ3(PETSC_COMM_SELF,PETSC_ERR_ARG_CORRUPT,"Source interval %D has negative orientation (%g,%g)",i,(double)sourcex[i],(double)sourcex[i+1]); 1179 } 1180 for (i=0; i<ntarget; i++) { 1181 if (targetx[i] >= targetx[i+1]) SETERRQ3(PETSC_COMM_SELF,PETSC_ERR_ARG_CORRUPT,"Target interval %D has negative orientation (%g,%g)",i,(double)targetx[i],(double)targetx[i+1]); 1182 } 1183 #endif 1184 xmin = PetscMin(sourcex[0],targetx[0]); 1185 xmax = PetscMax(sourcex[nsource],targetx[ntarget]); 1186 center = (xmin + xmax)/2; 1187 hscale = (xmax - xmin)/2; 1188 worksize = nsource; 1189 ierr = PetscMalloc4(degree+1,&bdegrees,nsource+1,&sourcey,nsource*(degree+1),&Bsource,worksize,&work);CHKERRQ(ierr); 1190 ierr = PetscMalloc4(nsource,&tau,nsource*(degree+1),&Bsinv,ntarget+1,&targety,ntarget*(degree+1),&Btarget);CHKERRQ(ierr); 1191 for (i=0; i<=nsource; i++) sourcey[i] = (sourcex[i]-center)/hscale; 1192 for (i=0; i<=degree; i++) bdegrees[i] = i+1; 1193 ierr = PetscDTLegendreIntegrate(nsource,sourcey,degree+1,bdegrees,PETSC_TRUE,Bsource);CHKERRQ(ierr); 1194 ierr = PetscDTPseudoInverseQR(nsource,nsource,degree+1,Bsource,Bsinv,tau,nsource,work);CHKERRQ(ierr); 1195 for (i=0; i<=ntarget; i++) targety[i] = (targetx[i]-center)/hscale; 1196 ierr = PetscDTLegendreIntegrate(ntarget,targety,degree+1,bdegrees,PETSC_FALSE,Btarget);CHKERRQ(ierr); 1197 for (i=0; i<ntarget; i++) { 1198 PetscReal rowsum = 0; 1199 for (j=0; j<nsource; j++) { 1200 PetscReal sum = 0; 1201 for (k=0; k<degree+1; k++) { 1202 sum += Btarget[i*(degree+1)+k] * Bsinv[k*nsource+j]; 1203 } 1204 R[i*nsource+j] = sum; 1205 rowsum += sum; 1206 } 1207 for (j=0; j<nsource; j++) R[i*nsource+j] /= rowsum; /* normalize each row */ 1208 } 1209 ierr = PetscFree4(bdegrees,sourcey,Bsource,work);CHKERRQ(ierr); 1210 ierr = PetscFree4(tau,Bsinv,targety,Btarget);CHKERRQ(ierr); 1211 PetscFunctionReturn(0); 1212 } 1213