147c6ae99SBarry Smith 2ccd284c7SBarry Smith #include <../src/dm/impls/composite/packimpl.h> /*I "petscdmcomposite.h" I*/ 3af0996ceSBarry Smith #include <petsc/private/isimpl.h> 4e10fd815SStefano Zampini #include <petsc/private/glvisviewerimpl.h> 52764a2aaSMatthew G. Knepley #include <petscds.h> 647c6ae99SBarry Smith 747c6ae99SBarry Smith /*@C 847c6ae99SBarry Smith DMCompositeSetCoupling - Sets user provided routines that compute the coupling between the 9bebe2cf6SSatish Balay separate components (DMs) in a DMto build the correct matrix nonzero structure. 1047c6ae99SBarry Smith 11d083f849SBarry Smith Logically Collective 1247c6ae99SBarry Smith 13*d8d19677SJose E. Roman Input Parameters: 1447c6ae99SBarry Smith + dm - the composite object 1547c6ae99SBarry Smith - formcouplelocations - routine to set the nonzero locations in the matrix 1647c6ae99SBarry Smith 1747c6ae99SBarry Smith Level: advanced 1847c6ae99SBarry Smith 19f5f57ec0SBarry Smith Not available from Fortran 20f5f57ec0SBarry Smith 2195452b02SPatrick Sanan Notes: 2295452b02SPatrick Sanan See DMSetApplicationContext() and DMGetApplicationContext() for how to get user information into 2347c6ae99SBarry Smith this routine 2447c6ae99SBarry Smith 2547c6ae99SBarry Smith @*/ 267087cfbeSBarry Smith PetscErrorCode DMCompositeSetCoupling(DM dm,PetscErrorCode (*FormCoupleLocations)(DM,Mat,PetscInt*,PetscInt*,PetscInt,PetscInt,PetscInt,PetscInt)) 2747c6ae99SBarry Smith { 2847c6ae99SBarry Smith DM_Composite *com = (DM_Composite*)dm->data; 2971b14b3eSStefano Zampini PetscBool flg; 3071b14b3eSStefano Zampini PetscErrorCode ierr; 3147c6ae99SBarry Smith 3247c6ae99SBarry Smith PetscFunctionBegin; 3371b14b3eSStefano Zampini ierr = PetscObjectTypeCompare((PetscObject)dm,DMCOMPOSITE,&flg);CHKERRQ(ierr); 3471b14b3eSStefano Zampini if (!flg) SETERRQ1(PetscObjectComm((PetscObject)dm),PETSC_ERR_USER,"Not for type %s",((PetscObject)dm)->type_name); 3547c6ae99SBarry Smith com->FormCoupleLocations = FormCoupleLocations; 3647c6ae99SBarry Smith PetscFunctionReturn(0); 3747c6ae99SBarry Smith } 3847c6ae99SBarry Smith 396bf464f9SBarry Smith PetscErrorCode DMDestroy_Composite(DM dm) 4047c6ae99SBarry Smith { 4147c6ae99SBarry Smith PetscErrorCode ierr; 4247c6ae99SBarry Smith struct DMCompositeLink *next, *prev; 4347c6ae99SBarry Smith DM_Composite *com = (DM_Composite*)dm->data; 4447c6ae99SBarry Smith 4547c6ae99SBarry Smith PetscFunctionBegin; 4647c6ae99SBarry Smith next = com->next; 4747c6ae99SBarry Smith while (next) { 4847c6ae99SBarry Smith prev = next; 4947c6ae99SBarry Smith next = next->next; 50fcfd50ebSBarry Smith ierr = DMDestroy(&prev->dm);CHKERRQ(ierr); 5147c6ae99SBarry Smith ierr = PetscFree(prev->grstarts);CHKERRQ(ierr); 5247c6ae99SBarry Smith ierr = PetscFree(prev);CHKERRQ(ierr); 5347c6ae99SBarry Smith } 54e10fd815SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)dm,"DMSetUpGLVisViewer_C",NULL);CHKERRQ(ierr); 55435a35e8SMatthew G Knepley /* This was originally freed in DMDestroy(), but that prevents reference counting of backend objects */ 56435a35e8SMatthew G Knepley ierr = PetscFree(com);CHKERRQ(ierr); 5747c6ae99SBarry Smith PetscFunctionReturn(0); 5847c6ae99SBarry Smith } 5947c6ae99SBarry Smith 607087cfbeSBarry Smith PetscErrorCode DMView_Composite(DM dm,PetscViewer v) 6147c6ae99SBarry Smith { 6247c6ae99SBarry Smith PetscErrorCode ierr; 6347c6ae99SBarry Smith PetscBool iascii; 6447c6ae99SBarry Smith DM_Composite *com = (DM_Composite*)dm->data; 6547c6ae99SBarry Smith 6647c6ae99SBarry Smith PetscFunctionBegin; 67251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)v,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr); 6847c6ae99SBarry Smith if (iascii) { 6947c6ae99SBarry Smith struct DMCompositeLink *lnk = com->next; 7047c6ae99SBarry Smith PetscInt i; 7147c6ae99SBarry Smith 7247c6ae99SBarry Smith ierr = PetscViewerASCIIPrintf(v,"DM (%s)\n",((PetscObject)dm)->prefix ? ((PetscObject)dm)->prefix : "no prefix");CHKERRQ(ierr); 739ae5db72SJed Brown ierr = PetscViewerASCIIPrintf(v," contains %D DMs\n",com->nDM);CHKERRQ(ierr); 7447c6ae99SBarry Smith ierr = PetscViewerASCIIPushTab(v);CHKERRQ(ierr); 7547c6ae99SBarry Smith for (i=0; lnk; lnk=lnk->next,i++) { 769ae5db72SJed Brown ierr = PetscViewerASCIIPrintf(v,"Link %D: DM of type %s\n",i,((PetscObject)lnk->dm)->type_name);CHKERRQ(ierr); 7747c6ae99SBarry Smith ierr = PetscViewerASCIIPushTab(v);CHKERRQ(ierr); 7847c6ae99SBarry Smith ierr = DMView(lnk->dm,v);CHKERRQ(ierr); 7947c6ae99SBarry Smith ierr = PetscViewerASCIIPopTab(v);CHKERRQ(ierr); 8047c6ae99SBarry Smith } 8147c6ae99SBarry Smith ierr = PetscViewerASCIIPopTab(v);CHKERRQ(ierr); 8247c6ae99SBarry Smith } 8347c6ae99SBarry Smith PetscFunctionReturn(0); 8447c6ae99SBarry Smith } 8547c6ae99SBarry Smith 8647c6ae99SBarry Smith /* --------------------------------------------------------------------------------------*/ 877087cfbeSBarry Smith PetscErrorCode DMSetUp_Composite(DM dm) 8847c6ae99SBarry Smith { 8947c6ae99SBarry Smith PetscErrorCode ierr; 9047c6ae99SBarry Smith PetscInt nprev = 0; 9147c6ae99SBarry Smith PetscMPIInt rank,size; 9247c6ae99SBarry Smith DM_Composite *com = (DM_Composite*)dm->data; 9347c6ae99SBarry Smith struct DMCompositeLink *next = com->next; 9447c6ae99SBarry Smith PetscLayout map; 9547c6ae99SBarry Smith 9647c6ae99SBarry Smith PetscFunctionBegin; 97ce94432eSBarry Smith if (com->setup) SETERRQ(PetscObjectComm((PetscObject)dm),PETSC_ERR_ARG_WRONGSTATE,"Packer has already been setup"); 98ce94432eSBarry Smith ierr = PetscLayoutCreate(PetscObjectComm((PetscObject)dm),&map);CHKERRQ(ierr); 9947c6ae99SBarry Smith ierr = PetscLayoutSetLocalSize(map,com->n);CHKERRQ(ierr); 10047c6ae99SBarry Smith ierr = PetscLayoutSetSize(map,PETSC_DETERMINE);CHKERRQ(ierr); 10147c6ae99SBarry Smith ierr = PetscLayoutSetBlockSize(map,1);CHKERRQ(ierr); 10247c6ae99SBarry Smith ierr = PetscLayoutSetUp(map);CHKERRQ(ierr); 10347c6ae99SBarry Smith ierr = PetscLayoutGetSize(map,&com->N);CHKERRQ(ierr); 1040298fd71SBarry Smith ierr = PetscLayoutGetRange(map,&com->rstart,NULL);CHKERRQ(ierr); 105fcfd50ebSBarry Smith ierr = PetscLayoutDestroy(&map);CHKERRQ(ierr); 10647c6ae99SBarry Smith 1079ae5db72SJed Brown /* now set the rstart for each linked vector */ 108ffc4695bSBarry Smith ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)dm),&rank);CHKERRMPI(ierr); 109ffc4695bSBarry Smith ierr = MPI_Comm_size(PetscObjectComm((PetscObject)dm),&size);CHKERRMPI(ierr); 11047c6ae99SBarry Smith while (next) { 11147c6ae99SBarry Smith next->rstart = nprev; 11206ebdd98SJed Brown nprev += next->n; 11347c6ae99SBarry Smith next->grstart = com->rstart + next->rstart; 114785e854fSJed Brown ierr = PetscMalloc1(size,&next->grstarts);CHKERRQ(ierr); 11555b25c41SPierre Jolivet ierr = MPI_Allgather(&next->grstart,1,MPIU_INT,next->grstarts,1,MPIU_INT,PetscObjectComm((PetscObject)dm));CHKERRMPI(ierr); 11647c6ae99SBarry Smith next = next->next; 11747c6ae99SBarry Smith } 11847c6ae99SBarry Smith com->setup = PETSC_TRUE; 11947c6ae99SBarry Smith PetscFunctionReturn(0); 12047c6ae99SBarry Smith } 12147c6ae99SBarry Smith 12247c6ae99SBarry Smith /* ----------------------------------------------------------------------------------*/ 12347c6ae99SBarry Smith 12473e31fe2SJed Brown /*@ 12547c6ae99SBarry Smith DMCompositeGetNumberDM - Get's the number of DM objects in the DMComposite 12647c6ae99SBarry Smith representation. 12747c6ae99SBarry Smith 12847c6ae99SBarry Smith Not Collective 12947c6ae99SBarry Smith 13047c6ae99SBarry Smith Input Parameter: 13147c6ae99SBarry Smith . dm - the packer object 13247c6ae99SBarry Smith 13347c6ae99SBarry Smith Output Parameter: 13447c6ae99SBarry Smith . nDM - the number of DMs 13547c6ae99SBarry Smith 13647c6ae99SBarry Smith Level: beginner 13747c6ae99SBarry Smith 13847c6ae99SBarry Smith @*/ 1397087cfbeSBarry Smith PetscErrorCode DMCompositeGetNumberDM(DM dm,PetscInt *nDM) 14047c6ae99SBarry Smith { 14147c6ae99SBarry Smith DM_Composite *com = (DM_Composite*)dm->data; 14271b14b3eSStefano Zampini PetscBool flg; 14371b14b3eSStefano Zampini PetscErrorCode ierr; 1445fd66863SKarl Rupp 14547c6ae99SBarry Smith PetscFunctionBegin; 14647c6ae99SBarry Smith PetscValidHeaderSpecific(dm,DM_CLASSID,1); 14771b14b3eSStefano Zampini ierr = PetscObjectTypeCompare((PetscObject)dm,DMCOMPOSITE,&flg);CHKERRQ(ierr); 14871b14b3eSStefano Zampini if (!flg) SETERRQ1(PetscObjectComm((PetscObject)dm),PETSC_ERR_USER,"Not for type %s",((PetscObject)dm)->type_name); 14947c6ae99SBarry Smith *nDM = com->nDM; 15047c6ae99SBarry Smith PetscFunctionReturn(0); 15147c6ae99SBarry Smith } 15247c6ae99SBarry Smith 15347c6ae99SBarry Smith /*@C 15447c6ae99SBarry Smith DMCompositeGetAccess - Allows one to access the individual packed vectors in their global 15547c6ae99SBarry Smith representation. 15647c6ae99SBarry Smith 157d083f849SBarry Smith Collective on dm 15847c6ae99SBarry Smith 1599ae5db72SJed Brown Input Parameters: 16047c6ae99SBarry Smith + dm - the packer object 1619ae5db72SJed Brown - gvec - the global vector 1629ae5db72SJed Brown 1639ae5db72SJed Brown Output Parameters: 1640298fd71SBarry Smith . Vec* ... - the packed parallel vectors, NULL for those that are not needed 16547c6ae99SBarry Smith 16695452b02SPatrick Sanan Notes: 16795452b02SPatrick Sanan Use DMCompositeRestoreAccess() to return the vectors when you no longer need them 16847c6ae99SBarry Smith 169f73e5cebSJed Brown Fortran Notes: 170f73e5cebSJed Brown 171f73e5cebSJed Brown Fortran callers must use numbered versions of this routine, e.g., DMCompositeGetAccess4(dm,gvec,vec1,vec2,vec3,vec4) 172f73e5cebSJed Brown or use the alternative interface DMCompositeGetAccessArray(). 173f73e5cebSJed Brown 17447c6ae99SBarry Smith Level: advanced 17547c6ae99SBarry Smith 176f73e5cebSJed Brown .seealso: DMCompositeGetEntries(), DMCompositeScatter() 17747c6ae99SBarry Smith @*/ 1787087cfbeSBarry Smith PetscErrorCode DMCompositeGetAccess(DM dm,Vec gvec,...) 17947c6ae99SBarry Smith { 18047c6ae99SBarry Smith va_list Argp; 18147c6ae99SBarry Smith PetscErrorCode ierr; 18247c6ae99SBarry Smith struct DMCompositeLink *next; 18347c6ae99SBarry Smith DM_Composite *com = (DM_Composite*)dm->data; 1845edff71fSBarry Smith PetscInt readonly; 18571b14b3eSStefano Zampini PetscBool flg; 18647c6ae99SBarry Smith 18747c6ae99SBarry Smith PetscFunctionBegin; 18847c6ae99SBarry Smith PetscValidHeaderSpecific(dm,DM_CLASSID,1); 18947c6ae99SBarry Smith PetscValidHeaderSpecific(gvec,VEC_CLASSID,2); 19071b14b3eSStefano Zampini ierr = PetscObjectTypeCompare((PetscObject)dm,DMCOMPOSITE,&flg);CHKERRQ(ierr); 19171b14b3eSStefano Zampini if (!flg) SETERRQ1(PetscObjectComm((PetscObject)dm),PETSC_ERR_USER,"Not for type %s",((PetscObject)dm)->type_name); 19247c6ae99SBarry Smith next = com->next; 19347c6ae99SBarry Smith if (!com->setup) { 194d7bf68aeSBarry Smith ierr = DMSetUp(dm);CHKERRQ(ierr); 19547c6ae99SBarry Smith } 19647c6ae99SBarry Smith 1975edff71fSBarry Smith ierr = VecLockGet(gvec,&readonly);CHKERRQ(ierr); 19847c6ae99SBarry Smith /* loop over packed objects, handling one at at time */ 19947c6ae99SBarry Smith va_start(Argp,gvec); 20047c6ae99SBarry Smith while (next) { 20147c6ae99SBarry Smith Vec *vec; 20247c6ae99SBarry Smith vec = va_arg(Argp, Vec*); 2039ae5db72SJed Brown if (vec) { 2049ae5db72SJed Brown ierr = DMGetGlobalVector(next->dm,vec);CHKERRQ(ierr); 2055edff71fSBarry Smith if (readonly) { 2065edff71fSBarry Smith const PetscScalar *array; 2075edff71fSBarry Smith ierr = VecGetArrayRead(gvec,&array);CHKERRQ(ierr); 2085edff71fSBarry Smith ierr = VecPlaceArray(*vec,array+next->rstart);CHKERRQ(ierr); 2098860a134SJunchao Zhang ierr = VecLockReadPush(*vec);CHKERRQ(ierr); 2105edff71fSBarry Smith ierr = VecRestoreArrayRead(gvec,&array);CHKERRQ(ierr); 2115edff71fSBarry Smith } else { 2125edff71fSBarry Smith PetscScalar *array; 2139ae5db72SJed Brown ierr = VecGetArray(gvec,&array);CHKERRQ(ierr); 2149ae5db72SJed Brown ierr = VecPlaceArray(*vec,array+next->rstart);CHKERRQ(ierr); 2159ae5db72SJed Brown ierr = VecRestoreArray(gvec,&array);CHKERRQ(ierr); 21647c6ae99SBarry Smith } 2175edff71fSBarry Smith } 21847c6ae99SBarry Smith next = next->next; 21947c6ae99SBarry Smith } 22047c6ae99SBarry Smith va_end(Argp); 22147c6ae99SBarry Smith PetscFunctionReturn(0); 22247c6ae99SBarry Smith } 22347c6ae99SBarry Smith 224f73e5cebSJed Brown /*@C 225f73e5cebSJed Brown DMCompositeGetAccessArray - Allows one to access the individual packed vectors in their global 226f73e5cebSJed Brown representation. 227f73e5cebSJed Brown 228d083f849SBarry Smith Collective on dm 229f73e5cebSJed Brown 230f73e5cebSJed Brown Input Parameters: 231f73e5cebSJed Brown + dm - the packer object 232f73e5cebSJed Brown . pvec - packed vector 233f73e5cebSJed Brown . nwanted - number of vectors wanted 2340298fd71SBarry Smith - wanted - sorted array of vectors wanted, or NULL to get all vectors 235f73e5cebSJed Brown 236f73e5cebSJed Brown Output Parameters: 237f73e5cebSJed Brown . vecs - array of requested global vectors (must be allocated) 238f73e5cebSJed Brown 23995452b02SPatrick Sanan Notes: 24095452b02SPatrick Sanan Use DMCompositeRestoreAccessArray() to return the vectors when you no longer need them 241f73e5cebSJed Brown 242f73e5cebSJed Brown Level: advanced 243f73e5cebSJed Brown 244f73e5cebSJed Brown .seealso: DMCompositeGetAccess(), DMCompositeGetEntries(), DMCompositeScatter(), DMCompositeGather() 245f73e5cebSJed Brown @*/ 246f73e5cebSJed Brown PetscErrorCode DMCompositeGetAccessArray(DM dm,Vec pvec,PetscInt nwanted,const PetscInt *wanted,Vec *vecs) 247f73e5cebSJed Brown { 248f73e5cebSJed Brown PetscErrorCode ierr; 249f73e5cebSJed Brown struct DMCompositeLink *link; 250f73e5cebSJed Brown PetscInt i,wnum; 251f73e5cebSJed Brown DM_Composite *com = (DM_Composite*)dm->data; 252bee642f7SBarry Smith PetscInt readonly; 25371b14b3eSStefano Zampini PetscBool flg; 254f73e5cebSJed Brown 255f73e5cebSJed Brown PetscFunctionBegin; 256f73e5cebSJed Brown PetscValidHeaderSpecific(dm,DM_CLASSID,1); 257f73e5cebSJed Brown PetscValidHeaderSpecific(pvec,VEC_CLASSID,2); 25871b14b3eSStefano Zampini ierr = PetscObjectTypeCompare((PetscObject)dm,DMCOMPOSITE,&flg);CHKERRQ(ierr); 25971b14b3eSStefano Zampini if (!flg) SETERRQ1(PetscObjectComm((PetscObject)dm),PETSC_ERR_USER,"Not for type %s",((PetscObject)dm)->type_name); 260f73e5cebSJed Brown if (!com->setup) { 261f73e5cebSJed Brown ierr = DMSetUp(dm);CHKERRQ(ierr); 262f73e5cebSJed Brown } 263f73e5cebSJed Brown 264bee642f7SBarry Smith ierr = VecLockGet(pvec,&readonly);CHKERRQ(ierr); 265f73e5cebSJed Brown for (i=0,wnum=0,link=com->next; link && wnum<nwanted; i++,link=link->next) { 266f73e5cebSJed Brown if (!wanted || i == wanted[wnum]) { 267f73e5cebSJed Brown Vec v; 268f73e5cebSJed Brown ierr = DMGetGlobalVector(link->dm,&v);CHKERRQ(ierr); 269bee642f7SBarry Smith if (readonly) { 270bee642f7SBarry Smith const PetscScalar *array; 271bee642f7SBarry Smith ierr = VecGetArrayRead(pvec,&array);CHKERRQ(ierr); 272bee642f7SBarry Smith ierr = VecPlaceArray(v,array+link->rstart);CHKERRQ(ierr); 2738860a134SJunchao Zhang ierr = VecLockReadPush(v);CHKERRQ(ierr); 274bee642f7SBarry Smith ierr = VecRestoreArrayRead(pvec,&array);CHKERRQ(ierr); 275bee642f7SBarry Smith } else { 276bee642f7SBarry Smith PetscScalar *array; 277f73e5cebSJed Brown ierr = VecGetArray(pvec,&array);CHKERRQ(ierr); 278f73e5cebSJed Brown ierr = VecPlaceArray(v,array+link->rstart);CHKERRQ(ierr); 279f73e5cebSJed Brown ierr = VecRestoreArray(pvec,&array);CHKERRQ(ierr); 280bee642f7SBarry Smith } 281f73e5cebSJed Brown vecs[wnum++] = v; 282f73e5cebSJed Brown } 283f73e5cebSJed Brown } 284f73e5cebSJed Brown PetscFunctionReturn(0); 285f73e5cebSJed Brown } 286f73e5cebSJed Brown 2877ac2b803SAlex Fikl /*@C 2887ac2b803SAlex Fikl DMCompositeGetLocalAccessArray - Allows one to access the individual 2897ac2b803SAlex Fikl packed vectors in their local representation. 2907ac2b803SAlex Fikl 291d083f849SBarry Smith Collective on dm. 2927ac2b803SAlex Fikl 2937ac2b803SAlex Fikl Input Parameters: 2947ac2b803SAlex Fikl + dm - the packer object 2957ac2b803SAlex Fikl . pvec - packed vector 2967ac2b803SAlex Fikl . nwanted - number of vectors wanted 2977ac2b803SAlex Fikl - wanted - sorted array of vectors wanted, or NULL to get all vectors 2987ac2b803SAlex Fikl 2997ac2b803SAlex Fikl Output Parameters: 3007ac2b803SAlex Fikl . vecs - array of requested local vectors (must be allocated) 3017ac2b803SAlex Fikl 30295452b02SPatrick Sanan Notes: 30395452b02SPatrick Sanan Use DMCompositeRestoreLocalAccessArray() to return the vectors 3047ac2b803SAlex Fikl when you no longer need them. 3057ac2b803SAlex Fikl 3067ac2b803SAlex Fikl Level: advanced 3077ac2b803SAlex Fikl 3087ac2b803SAlex Fikl .seealso: DMCompositeRestoreLocalAccessArray(), DMCompositeGetAccess(), 3097ac2b803SAlex Fikl DMCompositeGetEntries(), DMCompositeScatter(), DMCompositeGather() 3107ac2b803SAlex Fikl @*/ 3117ac2b803SAlex Fikl PetscErrorCode DMCompositeGetLocalAccessArray(DM dm,Vec pvec,PetscInt nwanted,const PetscInt *wanted,Vec *vecs) 3127ac2b803SAlex Fikl { 3137ac2b803SAlex Fikl PetscErrorCode ierr; 3147ac2b803SAlex Fikl struct DMCompositeLink *link; 3157ac2b803SAlex Fikl PetscInt i,wnum; 3167ac2b803SAlex Fikl DM_Composite *com = (DM_Composite*)dm->data; 3177ac2b803SAlex Fikl PetscInt readonly; 3187ac2b803SAlex Fikl PetscInt nlocal = 0; 31971b14b3eSStefano Zampini PetscBool flg; 3207ac2b803SAlex Fikl 3217ac2b803SAlex Fikl PetscFunctionBegin; 3227ac2b803SAlex Fikl PetscValidHeaderSpecific(dm,DM_CLASSID,1); 3237ac2b803SAlex Fikl PetscValidHeaderSpecific(pvec,VEC_CLASSID,2); 32471b14b3eSStefano Zampini ierr = PetscObjectTypeCompare((PetscObject)dm,DMCOMPOSITE,&flg);CHKERRQ(ierr); 32571b14b3eSStefano Zampini if (!flg) SETERRQ1(PetscObjectComm((PetscObject)dm),PETSC_ERR_USER,"Not for type %s",((PetscObject)dm)->type_name); 3267ac2b803SAlex Fikl if (!com->setup) { 3277ac2b803SAlex Fikl ierr = DMSetUp(dm);CHKERRQ(ierr); 3287ac2b803SAlex Fikl } 3297ac2b803SAlex Fikl 3307ac2b803SAlex Fikl ierr = VecLockGet(pvec,&readonly);CHKERRQ(ierr); 3317ac2b803SAlex Fikl for (i=0,wnum=0,link=com->next; link && wnum<nwanted; i++,link=link->next) { 3327ac2b803SAlex Fikl if (!wanted || i == wanted[wnum]) { 3337ac2b803SAlex Fikl Vec v; 3347ac2b803SAlex Fikl ierr = DMGetLocalVector(link->dm,&v);CHKERRQ(ierr); 3357ac2b803SAlex Fikl if (readonly) { 3367ac2b803SAlex Fikl const PetscScalar *array; 3377ac2b803SAlex Fikl ierr = VecGetArrayRead(pvec,&array);CHKERRQ(ierr); 3387ac2b803SAlex Fikl ierr = VecPlaceArray(v,array+nlocal);CHKERRQ(ierr); 3398860a134SJunchao Zhang ierr = VecLockReadPush(v);CHKERRQ(ierr); 3407ac2b803SAlex Fikl ierr = VecRestoreArrayRead(pvec,&array);CHKERRQ(ierr); 3417ac2b803SAlex Fikl } else { 3427ac2b803SAlex Fikl PetscScalar *array; 3437ac2b803SAlex Fikl ierr = VecGetArray(pvec,&array);CHKERRQ(ierr); 3447ac2b803SAlex Fikl ierr = VecPlaceArray(v,array+nlocal);CHKERRQ(ierr); 3457ac2b803SAlex Fikl ierr = VecRestoreArray(pvec,&array);CHKERRQ(ierr); 3467ac2b803SAlex Fikl } 3477ac2b803SAlex Fikl vecs[wnum++] = v; 3487ac2b803SAlex Fikl } 3497ac2b803SAlex Fikl 3507ac2b803SAlex Fikl nlocal += link->nlocal; 3517ac2b803SAlex Fikl } 3527ac2b803SAlex Fikl 3537ac2b803SAlex Fikl PetscFunctionReturn(0); 3547ac2b803SAlex Fikl } 3557ac2b803SAlex Fikl 35647c6ae99SBarry Smith /*@C 357aa219208SBarry Smith DMCompositeRestoreAccess - Returns the vectors obtained with DMCompositeGetAccess() 35847c6ae99SBarry Smith representation. 35947c6ae99SBarry Smith 360d083f849SBarry Smith Collective on dm 36147c6ae99SBarry Smith 3629ae5db72SJed Brown Input Parameters: 36347c6ae99SBarry Smith + dm - the packer object 36447c6ae99SBarry Smith . gvec - the global vector 3650298fd71SBarry Smith - Vec* ... - the individual parallel vectors, NULL for those that are not needed 36647c6ae99SBarry Smith 36747c6ae99SBarry Smith Level: advanced 36847c6ae99SBarry Smith 3699ae5db72SJed Brown .seealso DMCompositeAddDM(), DMCreateGlobalVector(), 3706eb61c8cSJed Brown DMCompositeGather(), DMCompositeCreate(), DMCompositeGetISLocalToGlobalMappings(), DMCompositeScatter(), 371aa219208SBarry Smith DMCompositeRestoreAccess(), DMCompositeGetAccess() 37247c6ae99SBarry Smith 37347c6ae99SBarry Smith @*/ 3747087cfbeSBarry Smith PetscErrorCode DMCompositeRestoreAccess(DM dm,Vec gvec,...) 37547c6ae99SBarry Smith { 37647c6ae99SBarry Smith va_list Argp; 37747c6ae99SBarry Smith PetscErrorCode ierr; 37847c6ae99SBarry Smith struct DMCompositeLink *next; 37947c6ae99SBarry Smith DM_Composite *com = (DM_Composite*)dm->data; 3805edff71fSBarry Smith PetscInt readonly; 38171b14b3eSStefano Zampini PetscBool flg; 38247c6ae99SBarry Smith 38347c6ae99SBarry Smith PetscFunctionBegin; 38447c6ae99SBarry Smith PetscValidHeaderSpecific(dm,DM_CLASSID,1); 38547c6ae99SBarry Smith PetscValidHeaderSpecific(gvec,VEC_CLASSID,2); 38671b14b3eSStefano Zampini ierr = PetscObjectTypeCompare((PetscObject)dm,DMCOMPOSITE,&flg);CHKERRQ(ierr); 38771b14b3eSStefano Zampini if (!flg) SETERRQ1(PetscObjectComm((PetscObject)dm),PETSC_ERR_USER,"Not for type %s",((PetscObject)dm)->type_name); 38847c6ae99SBarry Smith next = com->next; 38947c6ae99SBarry Smith if (!com->setup) { 390d7bf68aeSBarry Smith ierr = DMSetUp(dm);CHKERRQ(ierr); 39147c6ae99SBarry Smith } 39247c6ae99SBarry Smith 3935edff71fSBarry Smith ierr = VecLockGet(gvec,&readonly);CHKERRQ(ierr); 39447c6ae99SBarry Smith /* loop over packed objects, handling one at at time */ 39547c6ae99SBarry Smith va_start(Argp,gvec); 39647c6ae99SBarry Smith while (next) { 39747c6ae99SBarry Smith Vec *vec; 39847c6ae99SBarry Smith vec = va_arg(Argp, Vec*); 3999ae5db72SJed Brown if (vec) { 4009ae5db72SJed Brown ierr = VecResetArray(*vec);CHKERRQ(ierr); 4015edff71fSBarry Smith if (readonly) { 4028860a134SJunchao Zhang ierr = VecLockReadPop(*vec);CHKERRQ(ierr); 4035edff71fSBarry Smith } 404bee642f7SBarry Smith ierr = DMRestoreGlobalVector(next->dm,vec);CHKERRQ(ierr); 40547c6ae99SBarry Smith } 40647c6ae99SBarry Smith next = next->next; 40747c6ae99SBarry Smith } 40847c6ae99SBarry Smith va_end(Argp); 40947c6ae99SBarry Smith PetscFunctionReturn(0); 41047c6ae99SBarry Smith } 41147c6ae99SBarry Smith 412f73e5cebSJed Brown /*@C 413f73e5cebSJed Brown DMCompositeRestoreAccessArray - Returns the vectors obtained with DMCompositeGetAccessArray() 414f73e5cebSJed Brown 415d083f849SBarry Smith Collective on dm 416f73e5cebSJed Brown 417f73e5cebSJed Brown Input Parameters: 418f73e5cebSJed Brown + dm - the packer object 419f73e5cebSJed Brown . pvec - packed vector 420f73e5cebSJed Brown . nwanted - number of vectors wanted 4210298fd71SBarry Smith . wanted - sorted array of vectors wanted, or NULL to get all vectors 422f73e5cebSJed Brown - vecs - array of global vectors to return 423f73e5cebSJed Brown 424f73e5cebSJed Brown Level: advanced 425f73e5cebSJed Brown 426f73e5cebSJed Brown .seealso: DMCompositeRestoreAccess(), DMCompositeRestoreEntries(), DMCompositeScatter(), DMCompositeGather() 427f73e5cebSJed Brown @*/ 428f73e5cebSJed Brown PetscErrorCode DMCompositeRestoreAccessArray(DM dm,Vec pvec,PetscInt nwanted,const PetscInt *wanted,Vec *vecs) 429f73e5cebSJed Brown { 430f73e5cebSJed Brown PetscErrorCode ierr; 431f73e5cebSJed Brown struct DMCompositeLink *link; 432f73e5cebSJed Brown PetscInt i,wnum; 433f73e5cebSJed Brown DM_Composite *com = (DM_Composite*)dm->data; 434bee642f7SBarry Smith PetscInt readonly; 43571b14b3eSStefano Zampini PetscBool flg; 436f73e5cebSJed Brown 437f73e5cebSJed Brown PetscFunctionBegin; 438f73e5cebSJed Brown PetscValidHeaderSpecific(dm,DM_CLASSID,1); 439f73e5cebSJed Brown PetscValidHeaderSpecific(pvec,VEC_CLASSID,2); 44071b14b3eSStefano Zampini ierr = PetscObjectTypeCompare((PetscObject)dm,DMCOMPOSITE,&flg);CHKERRQ(ierr); 44171b14b3eSStefano Zampini if (!flg) SETERRQ1(PetscObjectComm((PetscObject)dm),PETSC_ERR_USER,"Not for type %s",((PetscObject)dm)->type_name); 442f73e5cebSJed Brown if (!com->setup) { 443f73e5cebSJed Brown ierr = DMSetUp(dm);CHKERRQ(ierr); 444f73e5cebSJed Brown } 445f73e5cebSJed Brown 446bee642f7SBarry Smith ierr = VecLockGet(pvec,&readonly);CHKERRQ(ierr); 447f73e5cebSJed Brown for (i=0,wnum=0,link=com->next; link && wnum<nwanted; i++,link=link->next) { 448f73e5cebSJed Brown if (!wanted || i == wanted[wnum]) { 449f73e5cebSJed Brown ierr = VecResetArray(vecs[wnum]);CHKERRQ(ierr); 450bee642f7SBarry Smith if (readonly) { 4518860a134SJunchao Zhang ierr = VecLockReadPop(vecs[wnum]);CHKERRQ(ierr); 452bee642f7SBarry Smith } 453f73e5cebSJed Brown ierr = DMRestoreGlobalVector(link->dm,&vecs[wnum]);CHKERRQ(ierr); 454f73e5cebSJed Brown wnum++; 455f73e5cebSJed Brown } 456f73e5cebSJed Brown } 457f73e5cebSJed Brown PetscFunctionReturn(0); 458f73e5cebSJed Brown } 459f73e5cebSJed Brown 4607ac2b803SAlex Fikl /*@C 4617ac2b803SAlex Fikl DMCompositeRestoreLocalAccessArray - Returns the vectors obtained with DMCompositeGetLocalAccessArray(). 4627ac2b803SAlex Fikl 463d083f849SBarry Smith Collective on dm. 4647ac2b803SAlex Fikl 4657ac2b803SAlex Fikl Input Parameters: 4667ac2b803SAlex Fikl + dm - the packer object 4677ac2b803SAlex Fikl . pvec - packed vector 4687ac2b803SAlex Fikl . nwanted - number of vectors wanted 4697ac2b803SAlex Fikl . wanted - sorted array of vectors wanted, or NULL to restore all vectors 4707ac2b803SAlex Fikl - vecs - array of local vectors to return 4717ac2b803SAlex Fikl 4727ac2b803SAlex Fikl Level: advanced 4737ac2b803SAlex Fikl 4747ac2b803SAlex Fikl Notes: 4757ac2b803SAlex Fikl nwanted and wanted must match the values given to DMCompositeGetLocalAccessArray() 4767ac2b803SAlex Fikl otherwise the call will fail. 4777ac2b803SAlex Fikl 4787ac2b803SAlex Fikl .seealso: DMCompositeGetLocalAccessArray(), DMCompositeRestoreAccessArray(), 4797ac2b803SAlex Fikl DMCompositeRestoreAccess(), DMCompositeRestoreEntries(), 4807ac2b803SAlex Fikl DMCompositeScatter(), DMCompositeGather() 4817ac2b803SAlex Fikl @*/ 4827ac2b803SAlex Fikl PetscErrorCode DMCompositeRestoreLocalAccessArray(DM dm,Vec pvec,PetscInt nwanted,const PetscInt *wanted,Vec *vecs) 4837ac2b803SAlex Fikl { 4847ac2b803SAlex Fikl PetscErrorCode ierr; 4857ac2b803SAlex Fikl struct DMCompositeLink *link; 4867ac2b803SAlex Fikl PetscInt i,wnum; 4877ac2b803SAlex Fikl DM_Composite *com = (DM_Composite*)dm->data; 4887ac2b803SAlex Fikl PetscInt readonly; 48971b14b3eSStefano Zampini PetscBool flg; 4907ac2b803SAlex Fikl 4917ac2b803SAlex Fikl PetscFunctionBegin; 4927ac2b803SAlex Fikl PetscValidHeaderSpecific(dm,DM_CLASSID,1); 4937ac2b803SAlex Fikl PetscValidHeaderSpecific(pvec,VEC_CLASSID,2); 49471b14b3eSStefano Zampini ierr = PetscObjectTypeCompare((PetscObject)dm,DMCOMPOSITE,&flg);CHKERRQ(ierr); 49571b14b3eSStefano Zampini if (!flg) SETERRQ1(PetscObjectComm((PetscObject)dm),PETSC_ERR_USER,"Not for type %s",((PetscObject)dm)->type_name); 4967ac2b803SAlex Fikl if (!com->setup) { 4977ac2b803SAlex Fikl ierr = DMSetUp(dm);CHKERRQ(ierr); 4987ac2b803SAlex Fikl } 4997ac2b803SAlex Fikl 5007ac2b803SAlex Fikl ierr = VecLockGet(pvec,&readonly);CHKERRQ(ierr); 5017ac2b803SAlex Fikl for (i=0,wnum=0,link=com->next; link && wnum<nwanted; i++,link=link->next) { 5027ac2b803SAlex Fikl if (!wanted || i == wanted[wnum]) { 5037ac2b803SAlex Fikl ierr = VecResetArray(vecs[wnum]);CHKERRQ(ierr); 5047ac2b803SAlex Fikl if (readonly) { 5058860a134SJunchao Zhang ierr = VecLockReadPop(vecs[wnum]);CHKERRQ(ierr); 5067ac2b803SAlex Fikl } 5077ac2b803SAlex Fikl ierr = DMRestoreLocalVector(link->dm,&vecs[wnum]);CHKERRQ(ierr); 5087ac2b803SAlex Fikl wnum++; 5097ac2b803SAlex Fikl } 5107ac2b803SAlex Fikl } 5117ac2b803SAlex Fikl PetscFunctionReturn(0); 5127ac2b803SAlex Fikl } 5137ac2b803SAlex Fikl 51447c6ae99SBarry Smith /*@C 51547c6ae99SBarry Smith DMCompositeScatter - Scatters from a global packed vector into its individual local vectors 51647c6ae99SBarry Smith 517d083f849SBarry Smith Collective on dm 51847c6ae99SBarry Smith 5199ae5db72SJed Brown Input Parameters: 52047c6ae99SBarry Smith + dm - the packer object 52147c6ae99SBarry Smith . gvec - the global vector 5220298fd71SBarry Smith - Vec ... - the individual sequential vectors, NULL for those that are not needed 52347c6ae99SBarry Smith 52447c6ae99SBarry Smith Level: advanced 52547c6ae99SBarry Smith 5266f3c3dcfSJed Brown Notes: 5276f3c3dcfSJed Brown DMCompositeScatterArray() is a non-variadic alternative that is often more convenient for library callers and is 5286f3c3dcfSJed Brown accessible from Fortran. 5296f3c3dcfSJed Brown 5309ae5db72SJed Brown .seealso DMDestroy(), DMCompositeAddDM(), DMCreateGlobalVector(), 5316eb61c8cSJed Brown DMCompositeGather(), DMCompositeCreate(), DMCompositeGetISLocalToGlobalMappings(), DMCompositeGetAccess(), 53247c6ae99SBarry Smith DMCompositeGetLocalVectors(), DMCompositeRestoreLocalVectors(), DMCompositeGetEntries() 5336f3c3dcfSJed Brown DMCompositeScatterArray() 53447c6ae99SBarry Smith 53547c6ae99SBarry Smith @*/ 5367087cfbeSBarry Smith PetscErrorCode DMCompositeScatter(DM dm,Vec gvec,...) 53747c6ae99SBarry Smith { 53847c6ae99SBarry Smith va_list Argp; 53947c6ae99SBarry Smith PetscErrorCode ierr; 54047c6ae99SBarry Smith struct DMCompositeLink *next; 5418fd8f222SJed Brown PetscInt cnt; 54247c6ae99SBarry Smith DM_Composite *com = (DM_Composite*)dm->data; 54371b14b3eSStefano Zampini PetscBool flg; 54447c6ae99SBarry Smith 54547c6ae99SBarry Smith PetscFunctionBegin; 54647c6ae99SBarry Smith PetscValidHeaderSpecific(dm,DM_CLASSID,1); 54747c6ae99SBarry Smith PetscValidHeaderSpecific(gvec,VEC_CLASSID,2); 54871b14b3eSStefano Zampini ierr = PetscObjectTypeCompare((PetscObject)dm,DMCOMPOSITE,&flg);CHKERRQ(ierr); 54971b14b3eSStefano Zampini if (!flg) SETERRQ1(PetscObjectComm((PetscObject)dm),PETSC_ERR_USER,"Not for type %s",((PetscObject)dm)->type_name); 55047c6ae99SBarry Smith if (!com->setup) { 551d7bf68aeSBarry Smith ierr = DMSetUp(dm);CHKERRQ(ierr); 55247c6ae99SBarry Smith } 55347c6ae99SBarry Smith 55447c6ae99SBarry Smith /* loop over packed objects, handling one at at time */ 55547c6ae99SBarry Smith va_start(Argp,gvec); 5568fd8f222SJed Brown for (cnt=3,next=com->next; next; cnt++,next=next->next) { 5579ae5db72SJed Brown Vec local; 5589ae5db72SJed Brown local = va_arg(Argp, Vec); 5599ae5db72SJed Brown if (local) { 5609ae5db72SJed Brown Vec global; 5615edff71fSBarry Smith const PetscScalar *array; 5629ae5db72SJed Brown PetscValidHeaderSpecific(local,VEC_CLASSID,cnt); 5639ae5db72SJed Brown ierr = DMGetGlobalVector(next->dm,&global);CHKERRQ(ierr); 5645edff71fSBarry Smith ierr = VecGetArrayRead(gvec,&array);CHKERRQ(ierr); 5659ae5db72SJed Brown ierr = VecPlaceArray(global,array+next->rstart);CHKERRQ(ierr); 5669ae5db72SJed Brown ierr = DMGlobalToLocalBegin(next->dm,global,INSERT_VALUES,local);CHKERRQ(ierr); 5679ae5db72SJed Brown ierr = DMGlobalToLocalEnd(next->dm,global,INSERT_VALUES,local);CHKERRQ(ierr); 5685edff71fSBarry Smith ierr = VecRestoreArrayRead(gvec,&array);CHKERRQ(ierr); 5699ae5db72SJed Brown ierr = VecResetArray(global);CHKERRQ(ierr); 5709ae5db72SJed Brown ierr = DMRestoreGlobalVector(next->dm,&global);CHKERRQ(ierr); 57147c6ae99SBarry Smith } 57247c6ae99SBarry Smith } 57347c6ae99SBarry Smith va_end(Argp); 57447c6ae99SBarry Smith PetscFunctionReturn(0); 57547c6ae99SBarry Smith } 57647c6ae99SBarry Smith 5776f3c3dcfSJed Brown /*@ 5786f3c3dcfSJed Brown DMCompositeScatterArray - Scatters from a global packed vector into its individual local vectors 5796f3c3dcfSJed Brown 580d083f849SBarry Smith Collective on dm 5816f3c3dcfSJed Brown 5826f3c3dcfSJed Brown Input Parameters: 5836f3c3dcfSJed Brown + dm - the packer object 5846f3c3dcfSJed Brown . gvec - the global vector 585a2b725a8SWilliam Gropp - lvecs - array of local vectors, NULL for any that are not needed 5866f3c3dcfSJed Brown 5876f3c3dcfSJed Brown Level: advanced 5886f3c3dcfSJed Brown 5896f3c3dcfSJed Brown Note: 590907376e6SBarry Smith This is a non-variadic alternative to DMCompositeScatter() 5916f3c3dcfSJed Brown 5926f3c3dcfSJed Brown .seealso DMDestroy(), DMCompositeAddDM(), DMCreateGlobalVector() 5936f3c3dcfSJed Brown DMCompositeGather(), DMCompositeCreate(), DMCompositeGetISLocalToGlobalMappings(), DMCompositeGetAccess(), 5946f3c3dcfSJed Brown DMCompositeGetLocalVectors(), DMCompositeRestoreLocalVectors(), DMCompositeGetEntries() 5956f3c3dcfSJed Brown 5966f3c3dcfSJed Brown @*/ 5976f3c3dcfSJed Brown PetscErrorCode DMCompositeScatterArray(DM dm,Vec gvec,Vec *lvecs) 5986f3c3dcfSJed Brown { 5996f3c3dcfSJed Brown PetscErrorCode ierr; 6006f3c3dcfSJed Brown struct DMCompositeLink *next; 6016f3c3dcfSJed Brown PetscInt i; 6026f3c3dcfSJed Brown DM_Composite *com = (DM_Composite*)dm->data; 60371b14b3eSStefano Zampini PetscBool flg; 6046f3c3dcfSJed Brown 6056f3c3dcfSJed Brown PetscFunctionBegin; 6066f3c3dcfSJed Brown PetscValidHeaderSpecific(dm,DM_CLASSID,1); 6076f3c3dcfSJed Brown PetscValidHeaderSpecific(gvec,VEC_CLASSID,2); 60871b14b3eSStefano Zampini ierr = PetscObjectTypeCompare((PetscObject)dm,DMCOMPOSITE,&flg);CHKERRQ(ierr); 60971b14b3eSStefano Zampini if (!flg) SETERRQ1(PetscObjectComm((PetscObject)dm),PETSC_ERR_USER,"Not for type %s",((PetscObject)dm)->type_name); 6106f3c3dcfSJed Brown if (!com->setup) { 6116f3c3dcfSJed Brown ierr = DMSetUp(dm);CHKERRQ(ierr); 6126f3c3dcfSJed Brown } 6136f3c3dcfSJed Brown 6146f3c3dcfSJed Brown /* loop over packed objects, handling one at at time */ 6156f3c3dcfSJed Brown for (i=0,next=com->next; next; next=next->next,i++) { 6166f3c3dcfSJed Brown if (lvecs[i]) { 6176f3c3dcfSJed Brown Vec global; 618c5d31e75SLisandro Dalcin const PetscScalar *array; 6196f3c3dcfSJed Brown PetscValidHeaderSpecific(lvecs[i],VEC_CLASSID,3); 6206f3c3dcfSJed Brown ierr = DMGetGlobalVector(next->dm,&global);CHKERRQ(ierr); 621c5d31e75SLisandro Dalcin ierr = VecGetArrayRead(gvec,&array);CHKERRQ(ierr); 622c5d31e75SLisandro Dalcin ierr = VecPlaceArray(global,(PetscScalar*)array+next->rstart);CHKERRQ(ierr); 6236f3c3dcfSJed Brown ierr = DMGlobalToLocalBegin(next->dm,global,INSERT_VALUES,lvecs[i]);CHKERRQ(ierr); 6246f3c3dcfSJed Brown ierr = DMGlobalToLocalEnd(next->dm,global,INSERT_VALUES,lvecs[i]);CHKERRQ(ierr); 625c5d31e75SLisandro Dalcin ierr = VecRestoreArrayRead(gvec,&array);CHKERRQ(ierr); 6266f3c3dcfSJed Brown ierr = VecResetArray(global);CHKERRQ(ierr); 6276f3c3dcfSJed Brown ierr = DMRestoreGlobalVector(next->dm,&global);CHKERRQ(ierr); 6286f3c3dcfSJed Brown } 6296f3c3dcfSJed Brown } 6306f3c3dcfSJed Brown PetscFunctionReturn(0); 6316f3c3dcfSJed Brown } 6326f3c3dcfSJed Brown 63347c6ae99SBarry Smith /*@C 63447c6ae99SBarry Smith DMCompositeGather - Gathers into a global packed vector from its individual local vectors 63547c6ae99SBarry Smith 636d083f849SBarry Smith Collective on dm 63747c6ae99SBarry Smith 638*d8d19677SJose E. Roman Input Parameters: 63947c6ae99SBarry Smith + dm - the packer object 64047c6ae99SBarry Smith . gvec - the global vector 641907376e6SBarry Smith . imode - INSERT_VALUES or ADD_VALUES 6420298fd71SBarry Smith - Vec ... - the individual sequential vectors, NULL for any that are not needed 64347c6ae99SBarry Smith 64447c6ae99SBarry Smith Level: advanced 64547c6ae99SBarry Smith 646f5f57ec0SBarry Smith Not available from Fortran, Fortran users can use DMCompositeGatherArray() 647f5f57ec0SBarry Smith 6489ae5db72SJed Brown .seealso DMDestroy(), DMCompositeAddDM(), DMCreateGlobalVector(), 6496eb61c8cSJed Brown DMCompositeScatter(), DMCompositeCreate(), DMCompositeGetISLocalToGlobalMappings(), DMCompositeGetAccess(), 65047c6ae99SBarry Smith DMCompositeGetLocalVectors(), DMCompositeRestoreLocalVectors(), DMCompositeGetEntries() 65147c6ae99SBarry Smith 65247c6ae99SBarry Smith @*/ 6531dac896bSSatish Balay PetscErrorCode DMCompositeGather(DM dm,InsertMode imode,Vec gvec,...) 65447c6ae99SBarry Smith { 65547c6ae99SBarry Smith va_list Argp; 65647c6ae99SBarry Smith PetscErrorCode ierr; 65747c6ae99SBarry Smith struct DMCompositeLink *next; 65847c6ae99SBarry Smith DM_Composite *com = (DM_Composite*)dm->data; 6598fd8f222SJed Brown PetscInt cnt; 66071b14b3eSStefano Zampini PetscBool flg; 66147c6ae99SBarry Smith 66247c6ae99SBarry Smith PetscFunctionBegin; 66347c6ae99SBarry Smith PetscValidHeaderSpecific(dm,DM_CLASSID,1); 664064a246eSJacob Faibussowitsch PetscValidHeaderSpecific(gvec,VEC_CLASSID,3); 66571b14b3eSStefano Zampini ierr = PetscObjectTypeCompare((PetscObject)dm,DMCOMPOSITE,&flg);CHKERRQ(ierr); 66671b14b3eSStefano Zampini if (!flg) SETERRQ1(PetscObjectComm((PetscObject)dm),PETSC_ERR_USER,"Not for type %s",((PetscObject)dm)->type_name); 66747c6ae99SBarry Smith if (!com->setup) { 668d7bf68aeSBarry Smith ierr = DMSetUp(dm);CHKERRQ(ierr); 66947c6ae99SBarry Smith } 67047c6ae99SBarry Smith 67147c6ae99SBarry Smith /* loop over packed objects, handling one at at time */ 6721dac896bSSatish Balay va_start(Argp,gvec); 6738fd8f222SJed Brown for (cnt=3,next=com->next; next; cnt++,next=next->next) { 6749ae5db72SJed Brown Vec local; 6759ae5db72SJed Brown local = va_arg(Argp, Vec); 6769ae5db72SJed Brown if (local) { 67747c6ae99SBarry Smith PetscScalar *array; 6789ae5db72SJed Brown Vec global; 6799ae5db72SJed Brown PetscValidHeaderSpecific(local,VEC_CLASSID,cnt); 6809ae5db72SJed Brown ierr = DMGetGlobalVector(next->dm,&global);CHKERRQ(ierr); 6819ae5db72SJed Brown ierr = VecGetArray(gvec,&array);CHKERRQ(ierr); 6829ae5db72SJed Brown ierr = VecPlaceArray(global,array+next->rstart);CHKERRQ(ierr); 6839ae5db72SJed Brown ierr = DMLocalToGlobalBegin(next->dm,local,imode,global);CHKERRQ(ierr); 6849ae5db72SJed Brown ierr = DMLocalToGlobalEnd(next->dm,local,imode,global);CHKERRQ(ierr); 6859ae5db72SJed Brown ierr = VecRestoreArray(gvec,&array);CHKERRQ(ierr); 6869ae5db72SJed Brown ierr = VecResetArray(global);CHKERRQ(ierr); 6879ae5db72SJed Brown ierr = DMRestoreGlobalVector(next->dm,&global);CHKERRQ(ierr); 68847c6ae99SBarry Smith } 68947c6ae99SBarry Smith } 69047c6ae99SBarry Smith va_end(Argp); 69147c6ae99SBarry Smith PetscFunctionReturn(0); 69247c6ae99SBarry Smith } 69347c6ae99SBarry Smith 6946f3c3dcfSJed Brown /*@ 6956f3c3dcfSJed Brown DMCompositeGatherArray - Gathers into a global packed vector from its individual local vectors 6966f3c3dcfSJed Brown 697d083f849SBarry Smith Collective on dm 6986f3c3dcfSJed Brown 699*d8d19677SJose E. Roman Input Parameters: 7006f3c3dcfSJed Brown + dm - the packer object 7016f3c3dcfSJed Brown . gvec - the global vector 702907376e6SBarry Smith . imode - INSERT_VALUES or ADD_VALUES 7036f3c3dcfSJed Brown - lvecs - the individual sequential vectors, NULL for any that are not needed 7046f3c3dcfSJed Brown 7056f3c3dcfSJed Brown Level: advanced 7066f3c3dcfSJed Brown 7076f3c3dcfSJed Brown Notes: 7086f3c3dcfSJed Brown This is a non-variadic alternative to DMCompositeGather(). 7096f3c3dcfSJed Brown 7106f3c3dcfSJed Brown .seealso DMDestroy(), DMCompositeAddDM(), DMCreateGlobalVector(), 7116f3c3dcfSJed Brown DMCompositeScatter(), DMCompositeCreate(), DMCompositeGetISLocalToGlobalMappings(), DMCompositeGetAccess(), 7126f3c3dcfSJed Brown DMCompositeGetLocalVectors(), DMCompositeRestoreLocalVectors(), DMCompositeGetEntries(), 7136f3c3dcfSJed Brown @*/ 7141dac896bSSatish Balay PetscErrorCode DMCompositeGatherArray(DM dm,InsertMode imode,Vec gvec,Vec *lvecs) 7156f3c3dcfSJed Brown { 7166f3c3dcfSJed Brown PetscErrorCode ierr; 7176f3c3dcfSJed Brown struct DMCompositeLink *next; 7186f3c3dcfSJed Brown DM_Composite *com = (DM_Composite*)dm->data; 7196f3c3dcfSJed Brown PetscInt i; 72071b14b3eSStefano Zampini PetscBool flg; 7216f3c3dcfSJed Brown 7226f3c3dcfSJed Brown PetscFunctionBegin; 7236f3c3dcfSJed Brown PetscValidHeaderSpecific(dm,DM_CLASSID,1); 724064a246eSJacob Faibussowitsch PetscValidHeaderSpecific(gvec,VEC_CLASSID,3); 72571b14b3eSStefano Zampini ierr = PetscObjectTypeCompare((PetscObject)dm,DMCOMPOSITE,&flg);CHKERRQ(ierr); 72671b14b3eSStefano Zampini if (!flg) SETERRQ1(PetscObjectComm((PetscObject)dm),PETSC_ERR_USER,"Not for type %s",((PetscObject)dm)->type_name); 7276f3c3dcfSJed Brown if (!com->setup) { 7286f3c3dcfSJed Brown ierr = DMSetUp(dm);CHKERRQ(ierr); 7296f3c3dcfSJed Brown } 7306f3c3dcfSJed Brown 7316f3c3dcfSJed Brown /* loop over packed objects, handling one at at time */ 7326f3c3dcfSJed Brown for (next=com->next,i=0; next; next=next->next,i++) { 7336f3c3dcfSJed Brown if (lvecs[i]) { 7346f3c3dcfSJed Brown PetscScalar *array; 7356f3c3dcfSJed Brown Vec global; 736064a246eSJacob Faibussowitsch PetscValidHeaderSpecific(lvecs[i],VEC_CLASSID,4); 7376f3c3dcfSJed Brown ierr = DMGetGlobalVector(next->dm,&global);CHKERRQ(ierr); 7386f3c3dcfSJed Brown ierr = VecGetArray(gvec,&array);CHKERRQ(ierr); 7396f3c3dcfSJed Brown ierr = VecPlaceArray(global,array+next->rstart);CHKERRQ(ierr); 7406f3c3dcfSJed Brown ierr = DMLocalToGlobalBegin(next->dm,lvecs[i],imode,global);CHKERRQ(ierr); 7416f3c3dcfSJed Brown ierr = DMLocalToGlobalEnd(next->dm,lvecs[i],imode,global);CHKERRQ(ierr); 7426f3c3dcfSJed Brown ierr = VecRestoreArray(gvec,&array);CHKERRQ(ierr); 7436f3c3dcfSJed Brown ierr = VecResetArray(global);CHKERRQ(ierr); 7446f3c3dcfSJed Brown ierr = DMRestoreGlobalVector(next->dm,&global);CHKERRQ(ierr); 7456f3c3dcfSJed Brown } 7466f3c3dcfSJed Brown } 7476f3c3dcfSJed Brown PetscFunctionReturn(0); 7486f3c3dcfSJed Brown } 7496f3c3dcfSJed Brown 750f5f57ec0SBarry Smith /*@ 751aa219208SBarry Smith DMCompositeAddDM - adds a DM vector to a DMComposite 75247c6ae99SBarry Smith 753d083f849SBarry Smith Collective on dm 75447c6ae99SBarry Smith 755*d8d19677SJose E. Roman Input Parameters: 7569b52a9b5SPatrick Sanan + dmc - the DMComposite (packer) object 757f5f57ec0SBarry Smith - dm - the DM object 75847c6ae99SBarry Smith 75947c6ae99SBarry Smith Level: advanced 76047c6ae99SBarry Smith 7610c010503SBarry Smith .seealso DMDestroy(), DMCompositeGather(), DMCompositeAddDM(), DMCreateGlobalVector(), 7626eb61c8cSJed Brown DMCompositeScatter(), DMCompositeCreate(), DMCompositeGetISLocalToGlobalMappings(), DMCompositeGetAccess(), 76347c6ae99SBarry Smith DMCompositeGetLocalVectors(), DMCompositeRestoreLocalVectors(), DMCompositeGetEntries() 76447c6ae99SBarry Smith 76547c6ae99SBarry Smith @*/ 7667087cfbeSBarry Smith PetscErrorCode DMCompositeAddDM(DM dmc,DM dm) 76747c6ae99SBarry Smith { 76847c6ae99SBarry Smith PetscErrorCode ierr; 76906ebdd98SJed Brown PetscInt n,nlocal; 77047c6ae99SBarry Smith struct DMCompositeLink *mine,*next; 77106ebdd98SJed Brown Vec global,local; 77247c6ae99SBarry Smith DM_Composite *com = (DM_Composite*)dmc->data; 77371b14b3eSStefano Zampini PetscBool flg; 77447c6ae99SBarry Smith 77547c6ae99SBarry Smith PetscFunctionBegin; 77647c6ae99SBarry Smith PetscValidHeaderSpecific(dmc,DM_CLASSID,1); 77747c6ae99SBarry Smith PetscValidHeaderSpecific(dm,DM_CLASSID,2); 77871b14b3eSStefano Zampini ierr = PetscObjectTypeCompare((PetscObject)dmc,DMCOMPOSITE,&flg);CHKERRQ(ierr); 77971b14b3eSStefano Zampini if (!flg) SETERRQ1(PetscObjectComm((PetscObject)dm),PETSC_ERR_USER,"Not for type %s",((PetscObject)dm)->type_name); 78047c6ae99SBarry Smith next = com->next; 781ce94432eSBarry Smith if (com->setup) SETERRQ(PetscObjectComm((PetscObject)dmc),PETSC_ERR_ARG_WRONGSTATE,"Cannot add a DM once you have used the DMComposite"); 78247c6ae99SBarry Smith 78347c6ae99SBarry Smith /* create new link */ 784b00a9115SJed Brown ierr = PetscNew(&mine);CHKERRQ(ierr); 78547c6ae99SBarry Smith ierr = PetscObjectReference((PetscObject)dm);CHKERRQ(ierr); 78647c6ae99SBarry Smith ierr = DMGetGlobalVector(dm,&global);CHKERRQ(ierr); 78747c6ae99SBarry Smith ierr = VecGetLocalSize(global,&n);CHKERRQ(ierr); 78847c6ae99SBarry Smith ierr = DMRestoreGlobalVector(dm,&global);CHKERRQ(ierr); 78906ebdd98SJed Brown ierr = DMGetLocalVector(dm,&local);CHKERRQ(ierr); 79006ebdd98SJed Brown ierr = VecGetSize(local,&nlocal);CHKERRQ(ierr); 79106ebdd98SJed Brown ierr = DMRestoreLocalVector(dm,&local);CHKERRQ(ierr); 7928865f1eaSKarl Rupp 79347c6ae99SBarry Smith mine->n = n; 79406ebdd98SJed Brown mine->nlocal = nlocal; 79547c6ae99SBarry Smith mine->dm = dm; 7960298fd71SBarry Smith mine->next = NULL; 79747c6ae99SBarry Smith com->n += n; 7987ac2b803SAlex Fikl com->nghost += nlocal; 79947c6ae99SBarry Smith 80047c6ae99SBarry Smith /* add to end of list */ 8018865f1eaSKarl Rupp if (!next) com->next = mine; 8028865f1eaSKarl Rupp else { 80347c6ae99SBarry Smith while (next->next) next = next->next; 80447c6ae99SBarry Smith next->next = mine; 80547c6ae99SBarry Smith } 80647c6ae99SBarry Smith com->nDM++; 80747c6ae99SBarry Smith com->nmine++; 80847c6ae99SBarry Smith PetscFunctionReturn(0); 80947c6ae99SBarry Smith } 81047c6ae99SBarry Smith 8119804daf3SBarry Smith #include <petscdraw.h> 81226887b52SJed Brown PETSC_EXTERN PetscErrorCode VecView_MPI(Vec,PetscViewer); 8137087cfbeSBarry Smith PetscErrorCode VecView_DMComposite(Vec gvec,PetscViewer viewer) 81447c6ae99SBarry Smith { 81547c6ae99SBarry Smith DM dm; 81647c6ae99SBarry Smith PetscErrorCode ierr; 81747c6ae99SBarry Smith struct DMCompositeLink *next; 81847c6ae99SBarry Smith PetscBool isdraw; 819cef07954SSatish Balay DM_Composite *com; 82047c6ae99SBarry Smith 82147c6ae99SBarry Smith PetscFunctionBegin; 822c688c046SMatthew G Knepley ierr = VecGetDM(gvec, &dm);CHKERRQ(ierr); 823ce94432eSBarry Smith if (!dm) SETERRQ(PetscObjectComm((PetscObject)gvec),PETSC_ERR_ARG_WRONG,"Vector not generated from a DMComposite"); 82447c6ae99SBarry Smith com = (DM_Composite*)dm->data; 82547c6ae99SBarry Smith next = com->next; 82647c6ae99SBarry Smith 827251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr); 82847c6ae99SBarry Smith if (!isdraw) { 82947c6ae99SBarry Smith /* do I really want to call this? */ 83047c6ae99SBarry Smith ierr = VecView_MPI(gvec,viewer);CHKERRQ(ierr); 83147c6ae99SBarry Smith } else { 83247c6ae99SBarry Smith PetscInt cnt = 0; 83347c6ae99SBarry Smith 83447c6ae99SBarry Smith /* loop over packed objects, handling one at at time */ 83547c6ae99SBarry Smith while (next) { 83647c6ae99SBarry Smith Vec vec; 837ca4278abSLisandro Dalcin const PetscScalar *array; 83847c6ae99SBarry Smith PetscInt bs; 83947c6ae99SBarry Smith 8409ae5db72SJed Brown /* Should use VecGetSubVector() eventually, but would need to forward the DM for that to work */ 8419ae5db72SJed Brown ierr = DMGetGlobalVector(next->dm,&vec);CHKERRQ(ierr); 842ca4278abSLisandro Dalcin ierr = VecGetArrayRead(gvec,&array);CHKERRQ(ierr); 843ca4278abSLisandro Dalcin ierr = VecPlaceArray(vec,(PetscScalar*)array+next->rstart);CHKERRQ(ierr); 844ca4278abSLisandro Dalcin ierr = VecRestoreArrayRead(gvec,&array);CHKERRQ(ierr); 84547c6ae99SBarry Smith ierr = VecView(vec,viewer);CHKERRQ(ierr); 8469ae5db72SJed Brown ierr = VecResetArray(vec);CHKERRQ(ierr); 847ca4278abSLisandro Dalcin ierr = VecGetBlockSize(vec,&bs);CHKERRQ(ierr); 8489ae5db72SJed Brown ierr = DMRestoreGlobalVector(next->dm,&vec);CHKERRQ(ierr); 84947c6ae99SBarry Smith ierr = PetscViewerDrawBaseAdd(viewer,bs);CHKERRQ(ierr); 85047c6ae99SBarry Smith cnt += bs; 85147c6ae99SBarry Smith next = next->next; 85247c6ae99SBarry Smith } 85347c6ae99SBarry Smith ierr = PetscViewerDrawBaseAdd(viewer,-cnt);CHKERRQ(ierr); 85447c6ae99SBarry Smith } 85547c6ae99SBarry Smith PetscFunctionReturn(0); 85647c6ae99SBarry Smith } 85747c6ae99SBarry Smith 8587087cfbeSBarry Smith PetscErrorCode DMCreateGlobalVector_Composite(DM dm,Vec *gvec) 85947c6ae99SBarry Smith { 86047c6ae99SBarry Smith PetscErrorCode ierr; 86147c6ae99SBarry Smith DM_Composite *com = (DM_Composite*)dm->data; 86247c6ae99SBarry Smith 86347c6ae99SBarry Smith PetscFunctionBegin; 86447c6ae99SBarry Smith PetscValidHeaderSpecific(dm,DM_CLASSID,1); 86505ec3129SRichard Tran Mills ierr = DMSetFromOptions(dm);CHKERRQ(ierr); 866d7bf68aeSBarry Smith ierr = DMSetUp(dm);CHKERRQ(ierr); 86705ec3129SRichard Tran Mills ierr = VecCreate(PetscObjectComm((PetscObject)dm),gvec);CHKERRQ(ierr); 86805ec3129SRichard Tran Mills ierr = VecSetType(*gvec,dm->vectype);CHKERRQ(ierr); 86905ec3129SRichard Tran Mills ierr = VecSetSizes(*gvec,com->n,com->N);CHKERRQ(ierr); 870c688c046SMatthew G Knepley ierr = VecSetDM(*gvec, dm);CHKERRQ(ierr); 87147c6ae99SBarry Smith ierr = VecSetOperation(*gvec,VECOP_VIEW,(void (*)(void))VecView_DMComposite);CHKERRQ(ierr); 87247c6ae99SBarry Smith PetscFunctionReturn(0); 87347c6ae99SBarry Smith } 87447c6ae99SBarry Smith 8757087cfbeSBarry Smith PetscErrorCode DMCreateLocalVector_Composite(DM dm,Vec *lvec) 87647c6ae99SBarry Smith { 87747c6ae99SBarry Smith PetscErrorCode ierr; 87847c6ae99SBarry Smith DM_Composite *com = (DM_Composite*)dm->data; 87947c6ae99SBarry Smith 88047c6ae99SBarry Smith PetscFunctionBegin; 88147c6ae99SBarry Smith PetscValidHeaderSpecific(dm,DM_CLASSID,1); 88247c6ae99SBarry Smith if (!com->setup) { 88305ec3129SRichard Tran Mills ierr = DMSetFromOptions(dm);CHKERRQ(ierr); 884d7bf68aeSBarry Smith ierr = DMSetUp(dm);CHKERRQ(ierr); 88547c6ae99SBarry Smith } 88605ec3129SRichard Tran Mills ierr = VecCreate(PETSC_COMM_SELF,lvec);CHKERRQ(ierr); 88705ec3129SRichard Tran Mills ierr = VecSetType(*lvec,dm->vectype);CHKERRQ(ierr); 88805ec3129SRichard Tran Mills ierr = VecSetSizes(*lvec,com->nghost,PETSC_DECIDE);CHKERRQ(ierr); 889c688c046SMatthew G Knepley ierr = VecSetDM(*lvec, dm);CHKERRQ(ierr); 89047c6ae99SBarry Smith PetscFunctionReturn(0); 89147c6ae99SBarry Smith } 89247c6ae99SBarry Smith 89347c6ae99SBarry Smith /*@C 8949ae5db72SJed Brown DMCompositeGetISLocalToGlobalMappings - gets an ISLocalToGlobalMapping for each DM in the DMComposite, maps to the composite global space 89547c6ae99SBarry Smith 89606ebdd98SJed Brown Collective on DM 89747c6ae99SBarry Smith 89847c6ae99SBarry Smith Input Parameter: 89947c6ae99SBarry Smith . dm - the packer object 90047c6ae99SBarry Smith 90147c6ae99SBarry Smith Output Parameters: 9029ae5db72SJed Brown . ltogs - the individual mappings for each packed vector. Note that this includes 9039ae5db72SJed Brown all the ghost points that individual ghosted DMDA's may have. 90447c6ae99SBarry Smith 90547c6ae99SBarry Smith Level: advanced 90647c6ae99SBarry Smith 90747c6ae99SBarry Smith Notes: 9086eb61c8cSJed Brown Each entry of ltogs should be destroyed with ISLocalToGlobalMappingDestroy(), the ltogs array should be freed with PetscFree(). 90947c6ae99SBarry Smith 910f5f57ec0SBarry Smith Not available from Fortran 911f5f57ec0SBarry Smith 9129ae5db72SJed Brown .seealso DMDestroy(), DMCompositeAddDM(), DMCreateGlobalVector(), 91347c6ae99SBarry Smith DMCompositeGather(), DMCompositeCreate(), DMCompositeGetAccess(), DMCompositeScatter(), 91447c6ae99SBarry Smith DMCompositeGetLocalVectors(), DMCompositeRestoreLocalVectors(),DMCompositeGetEntries() 91547c6ae99SBarry Smith 91647c6ae99SBarry Smith @*/ 9177087cfbeSBarry Smith PetscErrorCode DMCompositeGetISLocalToGlobalMappings(DM dm,ISLocalToGlobalMapping **ltogs) 91847c6ae99SBarry Smith { 91947c6ae99SBarry Smith PetscErrorCode ierr; 92047c6ae99SBarry Smith PetscInt i,*idx,n,cnt; 92147c6ae99SBarry Smith struct DMCompositeLink *next; 92247c6ae99SBarry Smith PetscMPIInt rank; 92347c6ae99SBarry Smith DM_Composite *com = (DM_Composite*)dm->data; 92471b14b3eSStefano Zampini PetscBool flg; 92547c6ae99SBarry Smith 92647c6ae99SBarry Smith PetscFunctionBegin; 92747c6ae99SBarry Smith PetscValidHeaderSpecific(dm,DM_CLASSID,1); 92871b14b3eSStefano Zampini ierr = PetscObjectTypeCompare((PetscObject)dm,DMCOMPOSITE,&flg);CHKERRQ(ierr); 92971b14b3eSStefano Zampini if (!flg) SETERRQ1(PetscObjectComm((PetscObject)dm),PETSC_ERR_USER,"Not for type %s",((PetscObject)dm)->type_name); 930728e99d6SJed Brown ierr = DMSetUp(dm);CHKERRQ(ierr); 931854ce69bSBarry Smith ierr = PetscMalloc1(com->nDM,ltogs);CHKERRQ(ierr); 93247c6ae99SBarry Smith next = com->next; 933ffc4695bSBarry Smith ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)dm),&rank);CHKERRMPI(ierr); 93447c6ae99SBarry Smith 93547c6ae99SBarry Smith /* loop over packed objects, handling one at at time */ 93647c6ae99SBarry Smith cnt = 0; 93747c6ae99SBarry Smith while (next) { 9386eb61c8cSJed Brown ISLocalToGlobalMapping ltog; 9396eb61c8cSJed Brown PetscMPIInt size; 94086994e45SJed Brown const PetscInt *suboff,*indices; 9416eb61c8cSJed Brown Vec global; 94247c6ae99SBarry Smith 9436eb61c8cSJed Brown /* Get sub-DM global indices for each local dof */ 9441411c6eeSJed Brown ierr = DMGetLocalToGlobalMapping(next->dm,<og);CHKERRQ(ierr); 9456eb61c8cSJed Brown ierr = ISLocalToGlobalMappingGetSize(ltog,&n);CHKERRQ(ierr); 94686994e45SJed Brown ierr = ISLocalToGlobalMappingGetIndices(ltog,&indices);CHKERRQ(ierr); 947785e854fSJed Brown ierr = PetscMalloc1(n,&idx);CHKERRQ(ierr); 94847c6ae99SBarry Smith 9496eb61c8cSJed Brown /* Get the offsets for the sub-DM global vector */ 9506eb61c8cSJed Brown ierr = DMGetGlobalVector(next->dm,&global);CHKERRQ(ierr); 9516eb61c8cSJed Brown ierr = VecGetOwnershipRanges(global,&suboff);CHKERRQ(ierr); 952ffc4695bSBarry Smith ierr = MPI_Comm_size(PetscObjectComm((PetscObject)global),&size);CHKERRMPI(ierr); 9536eb61c8cSJed Brown 9546eb61c8cSJed Brown /* Shift the sub-DM definition of the global space to the composite global space */ 9556eb61c8cSJed Brown for (i=0; i<n; i++) { 95686994e45SJed Brown PetscInt subi = indices[i],lo = 0,hi = size,t; 957e333b035SStefano Zampini /* There's no consensus on what a negative index means, 958e333b035SStefano Zampini except for skipping when setting the values in vectors and matrices */ 959e333b035SStefano Zampini if (subi < 0) { idx[i] = subi - next->grstarts[rank]; continue; } 9606eb61c8cSJed Brown /* Binary search to find which rank owns subi */ 9616eb61c8cSJed Brown while (hi-lo > 1) { 9626eb61c8cSJed Brown t = lo + (hi-lo)/2; 9636eb61c8cSJed Brown if (suboff[t] > subi) hi = t; 9646eb61c8cSJed Brown else lo = t; 9656eb61c8cSJed Brown } 9666eb61c8cSJed Brown idx[i] = subi - suboff[lo] + next->grstarts[lo]; 9676eb61c8cSJed Brown } 96886994e45SJed Brown ierr = ISLocalToGlobalMappingRestoreIndices(ltog,&indices);CHKERRQ(ierr); 969f0413b6fSBarry Smith ierr = ISLocalToGlobalMappingCreate(PetscObjectComm((PetscObject)dm),1,n,idx,PETSC_OWN_POINTER,&(*ltogs)[cnt]);CHKERRQ(ierr); 9706eb61c8cSJed Brown ierr = DMRestoreGlobalVector(next->dm,&global);CHKERRQ(ierr); 97147c6ae99SBarry Smith next = next->next; 97247c6ae99SBarry Smith cnt++; 97347c6ae99SBarry Smith } 97447c6ae99SBarry Smith PetscFunctionReturn(0); 97547c6ae99SBarry Smith } 97647c6ae99SBarry Smith 97787c85e80SJed Brown /*@C 9789ae5db72SJed Brown DMCompositeGetLocalISs - Gets index sets for each component of a composite local vector 97987c85e80SJed Brown 98087c85e80SJed Brown Not Collective 98187c85e80SJed Brown 98287c85e80SJed Brown Input Arguments: 98387c85e80SJed Brown . dm - composite DM 98487c85e80SJed Brown 98587c85e80SJed Brown Output Arguments: 98687c85e80SJed Brown . is - array of serial index sets for each each component of the DMComposite 98787c85e80SJed Brown 98887c85e80SJed Brown Level: intermediate 98987c85e80SJed Brown 99087c85e80SJed Brown Notes: 99187c85e80SJed Brown At present, a composite local vector does not normally exist. This function is used to provide index sets for 99287c85e80SJed Brown MatGetLocalSubMatrix(). In the future, the scatters for each entry in the DMComposite may be be merged into a single 9939ae5db72SJed Brown scatter to a composite local vector. The user should not typically need to know which is being done. 99487c85e80SJed Brown 99587c85e80SJed Brown To get the composite global indices at all local points (including ghosts), use DMCompositeGetISLocalToGlobalMappings(). 99687c85e80SJed Brown 99787c85e80SJed Brown To get index sets for pieces of the composite global vector, use DMCompositeGetGlobalISs(). 99887c85e80SJed Brown 99987c85e80SJed Brown Each returned IS should be destroyed with ISDestroy(), the array should be freed with PetscFree(). 100087c85e80SJed Brown 1001f5f57ec0SBarry Smith Not available from Fortran 1002f5f57ec0SBarry Smith 100387c85e80SJed Brown .seealso: DMCompositeGetGlobalISs(), DMCompositeGetISLocalToGlobalMappings(), MatGetLocalSubMatrix(), MatCreateLocalRef() 100487c85e80SJed Brown @*/ 10057087cfbeSBarry Smith PetscErrorCode DMCompositeGetLocalISs(DM dm,IS **is) 100687c85e80SJed Brown { 100787c85e80SJed Brown PetscErrorCode ierr; 100887c85e80SJed Brown DM_Composite *com = (DM_Composite*)dm->data; 100987c85e80SJed Brown struct DMCompositeLink *link; 101087c85e80SJed Brown PetscInt cnt,start; 101171b14b3eSStefano Zampini PetscBool flg; 101287c85e80SJed Brown 101387c85e80SJed Brown PetscFunctionBegin; 101487c85e80SJed Brown PetscValidHeaderSpecific(dm,DM_CLASSID,1); 101587c85e80SJed Brown PetscValidPointer(is,2); 101671b14b3eSStefano Zampini ierr = PetscObjectTypeCompare((PetscObject)dm,DMCOMPOSITE,&flg);CHKERRQ(ierr); 101771b14b3eSStefano Zampini if (!flg) SETERRQ1(PetscObjectComm((PetscObject)dm),PETSC_ERR_USER,"Not for type %s",((PetscObject)dm)->type_name); 1018785e854fSJed Brown ierr = PetscMalloc1(com->nmine,is);CHKERRQ(ierr); 101906ebdd98SJed Brown for (cnt=0,start=0,link=com->next; link; start+=link->nlocal,cnt++,link=link->next) { 1020520db06cSJed Brown PetscInt bs; 10219ae5db72SJed Brown ierr = ISCreateStride(PETSC_COMM_SELF,link->nlocal,start,1,&(*is)[cnt]);CHKERRQ(ierr); 10221411c6eeSJed Brown ierr = DMGetBlockSize(link->dm,&bs);CHKERRQ(ierr); 1023520db06cSJed Brown ierr = ISSetBlockSize((*is)[cnt],bs);CHKERRQ(ierr); 1024520db06cSJed Brown } 102587c85e80SJed Brown PetscFunctionReturn(0); 102687c85e80SJed Brown } 102787c85e80SJed Brown 102847c6ae99SBarry Smith /*@C 102947c6ae99SBarry Smith DMCompositeGetGlobalISs - Gets the index sets for each composed object 103047c6ae99SBarry Smith 1031d083f849SBarry Smith Collective on dm 103247c6ae99SBarry Smith 103347c6ae99SBarry Smith Input Parameter: 103447c6ae99SBarry Smith . dm - the packer object 103547c6ae99SBarry Smith 103647c6ae99SBarry Smith Output Parameters: 103747c6ae99SBarry Smith . is - the array of index sets 103847c6ae99SBarry Smith 103947c6ae99SBarry Smith Level: advanced 104047c6ae99SBarry Smith 104147c6ae99SBarry Smith Notes: 104247c6ae99SBarry Smith The is entries should be destroyed with ISDestroy(), the is array should be freed with PetscFree() 104347c6ae99SBarry Smith 104447c6ae99SBarry Smith These could be used to extract a subset of vector entries for a "multi-physics" preconditioner 104547c6ae99SBarry Smith 10466eb61c8cSJed Brown Use DMCompositeGetLocalISs() for index sets in the packed local numbering, and 10476eb61c8cSJed Brown DMCompositeGetISLocalToGlobalMappings() for to map local sub-DM (including ghost) indices to packed global 10486eb61c8cSJed Brown indices. 104947c6ae99SBarry Smith 1050f3cb0f7eSJed Brown Fortran Notes: 1051f3cb0f7eSJed Brown 1052f3cb0f7eSJed Brown The output argument 'is' must be an allocated array of sufficient length, which can be learned using DMCompositeGetNumberDM(). 1053f3cb0f7eSJed Brown 10549ae5db72SJed Brown .seealso DMDestroy(), DMCompositeAddDM(), DMCreateGlobalVector(), 105547c6ae99SBarry Smith DMCompositeGather(), DMCompositeCreate(), DMCompositeGetAccess(), DMCompositeScatter(), 105647c6ae99SBarry Smith DMCompositeGetLocalVectors(), DMCompositeRestoreLocalVectors(),DMCompositeGetEntries() 105747c6ae99SBarry Smith 105847c6ae99SBarry Smith @*/ 10597087cfbeSBarry Smith PetscErrorCode DMCompositeGetGlobalISs(DM dm,IS *is[]) 106047c6ae99SBarry Smith { 106147c6ae99SBarry Smith PetscErrorCode ierr; 106266bb578eSMark Adams PetscInt cnt = 0; 106347c6ae99SBarry Smith struct DMCompositeLink *next; 106447c6ae99SBarry Smith PetscMPIInt rank; 106547c6ae99SBarry Smith DM_Composite *com = (DM_Composite*)dm->data; 106671b14b3eSStefano Zampini PetscBool flg; 106747c6ae99SBarry Smith 106847c6ae99SBarry Smith PetscFunctionBegin; 106947c6ae99SBarry Smith PetscValidHeaderSpecific(dm,DM_CLASSID,1); 107071b14b3eSStefano Zampini ierr = PetscObjectTypeCompare((PetscObject)dm,DMCOMPOSITE,&flg);CHKERRQ(ierr); 107171b14b3eSStefano Zampini if (!flg) SETERRQ1(PetscObjectComm((PetscObject)dm),PETSC_ERR_USER,"Not for type %s",((PetscObject)dm)->type_name); 107271b14b3eSStefano Zampini if (!dm->setupcalled) SETERRQ(PetscObjectComm((PetscObject)dm),PETSC_ERR_ARG_WRONGSTATE,"Must call DMSetUp() before"); 1073854ce69bSBarry Smith ierr = PetscMalloc1(com->nDM,is);CHKERRQ(ierr); 107447c6ae99SBarry Smith next = com->next; 1075ffc4695bSBarry Smith ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)dm),&rank);CHKERRMPI(ierr); 107647c6ae99SBarry Smith 107747c6ae99SBarry Smith /* loop over packed objects, handling one at at time */ 107847c6ae99SBarry Smith while (next) { 1079e5e52638SMatthew G. Knepley PetscDS prob; 1080e5e52638SMatthew G. Knepley 108166bb578eSMark Adams ierr = ISCreateStride(PetscObjectComm((PetscObject)dm),next->n,next->grstart,1,&(*is)[cnt]);CHKERRQ(ierr); 1082e5e52638SMatthew G. Knepley ierr = DMGetDS(dm, &prob);CHKERRQ(ierr); 1083e5e52638SMatthew G. Knepley if (prob) { 108465c226d8SMatthew G. Knepley MatNullSpace space; 108565c226d8SMatthew G. Knepley Mat pmat; 10860f21e855SMatthew G. Knepley PetscObject disc; 10870f21e855SMatthew G. Knepley PetscInt Nf; 108865c226d8SMatthew G. Knepley 1089e5e52638SMatthew G. Knepley ierr = PetscDSGetNumFields(prob, &Nf);CHKERRQ(ierr); 1090f24dd8d2SMatthew G. Knepley if (cnt < Nf) { 1091e5e52638SMatthew G. Knepley ierr = PetscDSGetDiscretization(prob, cnt, &disc);CHKERRQ(ierr); 10920f21e855SMatthew G. Knepley ierr = PetscObjectQuery(disc, "nullspace", (PetscObject*) &space);CHKERRQ(ierr); 1093aac2dd2dSMatthew G. Knepley if (space) {ierr = PetscObjectCompose((PetscObject) (*is)[cnt], "nullspace", (PetscObject) space);CHKERRQ(ierr);} 10940f21e855SMatthew G. Knepley ierr = PetscObjectQuery(disc, "nearnullspace", (PetscObject*) &space);CHKERRQ(ierr); 1095aac2dd2dSMatthew G. Knepley if (space) {ierr = PetscObjectCompose((PetscObject) (*is)[cnt], "nearnullspace", (PetscObject) space);CHKERRQ(ierr);} 10960f21e855SMatthew G. Knepley ierr = PetscObjectQuery(disc, "pmat", (PetscObject*) &pmat);CHKERRQ(ierr); 1097aac2dd2dSMatthew G. Knepley if (pmat) {ierr = PetscObjectCompose((PetscObject) (*is)[cnt], "pmat", (PetscObject) pmat);CHKERRQ(ierr);} 109865c226d8SMatthew G. Knepley } 1099f24dd8d2SMatthew G. Knepley } 110047c6ae99SBarry Smith cnt++; 110147c6ae99SBarry Smith next = next->next; 110247c6ae99SBarry Smith } 110347c6ae99SBarry Smith PetscFunctionReturn(0); 110447c6ae99SBarry Smith } 110547c6ae99SBarry Smith 110621c9b008SJed Brown PetscErrorCode DMCreateFieldIS_Composite(DM dm, PetscInt *numFields,char ***fieldNames, IS **fields) 11074d343eeaSMatthew G Knepley { 11084d343eeaSMatthew G Knepley PetscInt nDM; 11094d343eeaSMatthew G Knepley DM *dms; 11104d343eeaSMatthew G Knepley PetscInt i; 11114d343eeaSMatthew G Knepley PetscErrorCode ierr; 11124d343eeaSMatthew G Knepley 11134d343eeaSMatthew G Knepley PetscFunctionBegin; 11144d343eeaSMatthew G Knepley ierr = DMCompositeGetNumberDM(dm, &nDM);CHKERRQ(ierr); 11158865f1eaSKarl Rupp if (numFields) *numFields = nDM; 11164d343eeaSMatthew G Knepley ierr = DMCompositeGetGlobalISs(dm, fields);CHKERRQ(ierr); 11174d343eeaSMatthew G Knepley if (fieldNames) { 1118785e854fSJed Brown ierr = PetscMalloc1(nDM, &dms);CHKERRQ(ierr); 1119785e854fSJed Brown ierr = PetscMalloc1(nDM, fieldNames);CHKERRQ(ierr); 11204d343eeaSMatthew G Knepley ierr = DMCompositeGetEntriesArray(dm, dms);CHKERRQ(ierr); 11214d343eeaSMatthew G Knepley for (i=0; i<nDM; i++) { 11224d343eeaSMatthew G Knepley char buf[256]; 11234d343eeaSMatthew G Knepley const char *splitname; 11244d343eeaSMatthew G Knepley 11254d343eeaSMatthew G Knepley /* Split naming precedence: object name, prefix, number */ 11264d343eeaSMatthew G Knepley splitname = ((PetscObject) dm)->name; 11274d343eeaSMatthew G Knepley if (!splitname) { 11284d343eeaSMatthew G Knepley ierr = PetscObjectGetOptionsPrefix((PetscObject)dms[i],&splitname);CHKERRQ(ierr); 11294d343eeaSMatthew G Knepley if (splitname) { 11304d343eeaSMatthew G Knepley size_t len; 11318caf3d72SBarry Smith ierr = PetscStrncpy(buf,splitname,sizeof(buf));CHKERRQ(ierr); 11328caf3d72SBarry Smith buf[sizeof(buf) - 1] = 0; 11334d343eeaSMatthew G Knepley ierr = PetscStrlen(buf,&len);CHKERRQ(ierr); 11344d343eeaSMatthew G Knepley if (buf[len-1] == '_') buf[len-1] = 0; /* Remove trailing underscore if it was used */ 11354d343eeaSMatthew G Knepley splitname = buf; 11364d343eeaSMatthew G Knepley } 11374d343eeaSMatthew G Knepley } 11384d343eeaSMatthew G Knepley if (!splitname) { 11398caf3d72SBarry Smith ierr = PetscSNPrintf(buf,sizeof(buf),"%D",i);CHKERRQ(ierr); 11404d343eeaSMatthew G Knepley splitname = buf; 11414d343eeaSMatthew G Knepley } 114221c9b008SJed Brown ierr = PetscStrallocpy(splitname,&(*fieldNames)[i]);CHKERRQ(ierr); 11434d343eeaSMatthew G Knepley } 11444d343eeaSMatthew G Knepley ierr = PetscFree(dms);CHKERRQ(ierr); 11454d343eeaSMatthew G Knepley } 11464d343eeaSMatthew G Knepley PetscFunctionReturn(0); 11474d343eeaSMatthew G Knepley } 11484d343eeaSMatthew G Knepley 1149e7c4fc90SDmitry Karpeev /* 1150e7c4fc90SDmitry Karpeev This could take over from DMCreateFieldIS(), as it is more general, 11510298fd71SBarry Smith making DMCreateFieldIS() a special case -- calling with dmlist == NULL; 1152e7c4fc90SDmitry Karpeev At this point it's probably best to be less intrusive, however. 1153e7c4fc90SDmitry Karpeev */ 115416621825SDmitry Karpeev PetscErrorCode DMCreateFieldDecomposition_Composite(DM dm, PetscInt *len,char ***namelist, IS **islist, DM **dmlist) 1155e7c4fc90SDmitry Karpeev { 1156e7c4fc90SDmitry Karpeev PetscInt nDM; 1157e7c4fc90SDmitry Karpeev PetscInt i; 1158e7c4fc90SDmitry Karpeev PetscErrorCode ierr; 1159e7c4fc90SDmitry Karpeev 1160e7c4fc90SDmitry Karpeev PetscFunctionBegin; 1161e7c4fc90SDmitry Karpeev ierr = DMCreateFieldIS_Composite(dm, len, namelist, islist);CHKERRQ(ierr); 1162e7c4fc90SDmitry Karpeev if (dmlist) { 1163e7c4fc90SDmitry Karpeev ierr = DMCompositeGetNumberDM(dm, &nDM);CHKERRQ(ierr); 1164785e854fSJed Brown ierr = PetscMalloc1(nDM, dmlist);CHKERRQ(ierr); 1165e7c4fc90SDmitry Karpeev ierr = DMCompositeGetEntriesArray(dm, *dmlist);CHKERRQ(ierr); 1166e7c4fc90SDmitry Karpeev for (i=0; i<nDM; i++) { 1167e7c4fc90SDmitry Karpeev ierr = PetscObjectReference((PetscObject)((*dmlist)[i]));CHKERRQ(ierr); 1168e7c4fc90SDmitry Karpeev } 1169e7c4fc90SDmitry Karpeev } 1170e7c4fc90SDmitry Karpeev PetscFunctionReturn(0); 1171e7c4fc90SDmitry Karpeev } 1172e7c4fc90SDmitry Karpeev 117347c6ae99SBarry Smith /* -------------------------------------------------------------------------------------*/ 117447c6ae99SBarry Smith /*@C 11759ae5db72SJed Brown DMCompositeGetLocalVectors - Gets local vectors for each part of a DMComposite. 117647c6ae99SBarry Smith Use DMCompositeRestoreLocalVectors() to return them. 117747c6ae99SBarry Smith 117847c6ae99SBarry Smith Not Collective 117947c6ae99SBarry Smith 118047c6ae99SBarry Smith Input Parameter: 118147c6ae99SBarry Smith . dm - the packer object 118247c6ae99SBarry Smith 118347c6ae99SBarry Smith Output Parameter: 11849ae5db72SJed Brown . Vec ... - the individual sequential Vecs 118547c6ae99SBarry Smith 118647c6ae99SBarry Smith Level: advanced 118747c6ae99SBarry Smith 1188f5f57ec0SBarry Smith Not available from Fortran 1189f5f57ec0SBarry Smith 11909ae5db72SJed Brown .seealso DMDestroy(), DMCompositeAddDM(), DMCreateGlobalVector(), 11916eb61c8cSJed Brown DMCompositeGather(), DMCompositeCreate(), DMCompositeGetISLocalToGlobalMappings(), DMCompositeGetAccess(), 119247c6ae99SBarry Smith DMCompositeRestoreLocalVectors(), DMCompositeScatter(), DMCompositeGetEntries() 119347c6ae99SBarry Smith 119447c6ae99SBarry Smith @*/ 11957087cfbeSBarry Smith PetscErrorCode DMCompositeGetLocalVectors(DM dm,...) 119647c6ae99SBarry Smith { 119747c6ae99SBarry Smith va_list Argp; 119847c6ae99SBarry Smith PetscErrorCode ierr; 119947c6ae99SBarry Smith struct DMCompositeLink *next; 120047c6ae99SBarry Smith DM_Composite *com = (DM_Composite*)dm->data; 120171b14b3eSStefano Zampini PetscBool flg; 120247c6ae99SBarry Smith 120347c6ae99SBarry Smith PetscFunctionBegin; 120447c6ae99SBarry Smith PetscValidHeaderSpecific(dm,DM_CLASSID,1); 120571b14b3eSStefano Zampini ierr = PetscObjectTypeCompare((PetscObject)dm,DMCOMPOSITE,&flg);CHKERRQ(ierr); 120671b14b3eSStefano Zampini if (!flg) SETERRQ1(PetscObjectComm((PetscObject)dm),PETSC_ERR_USER,"Not for type %s",((PetscObject)dm)->type_name); 120747c6ae99SBarry Smith next = com->next; 120847c6ae99SBarry Smith /* loop over packed objects, handling one at at time */ 120947c6ae99SBarry Smith va_start(Argp,dm); 121047c6ae99SBarry Smith while (next) { 121147c6ae99SBarry Smith Vec *vec; 121247c6ae99SBarry Smith vec = va_arg(Argp, Vec*); 121306930112SJed Brown if (vec) {ierr = DMGetLocalVector(next->dm,vec);CHKERRQ(ierr);} 121447c6ae99SBarry Smith next = next->next; 121547c6ae99SBarry Smith } 121647c6ae99SBarry Smith va_end(Argp); 121747c6ae99SBarry Smith PetscFunctionReturn(0); 121847c6ae99SBarry Smith } 121947c6ae99SBarry Smith 122047c6ae99SBarry Smith /*@C 12219ae5db72SJed Brown DMCompositeRestoreLocalVectors - Restores local vectors for each part of a DMComposite. 122247c6ae99SBarry Smith 122347c6ae99SBarry Smith Not Collective 122447c6ae99SBarry Smith 122547c6ae99SBarry Smith Input Parameter: 122647c6ae99SBarry Smith . dm - the packer object 122747c6ae99SBarry Smith 122847c6ae99SBarry Smith Output Parameter: 12299ae5db72SJed Brown . Vec ... - the individual sequential Vecs 123047c6ae99SBarry Smith 123147c6ae99SBarry Smith Level: advanced 123247c6ae99SBarry Smith 1233f5f57ec0SBarry Smith Not available from Fortran 1234f5f57ec0SBarry Smith 12359ae5db72SJed Brown .seealso DMDestroy(), DMCompositeAddDM(), DMCreateGlobalVector(), 12366eb61c8cSJed Brown DMCompositeGather(), DMCompositeCreate(), DMCompositeGetISLocalToGlobalMappings(), DMCompositeGetAccess(), 123747c6ae99SBarry Smith DMCompositeGetLocalVectors(), DMCompositeScatter(), DMCompositeGetEntries() 123847c6ae99SBarry Smith 123947c6ae99SBarry Smith @*/ 12407087cfbeSBarry Smith PetscErrorCode DMCompositeRestoreLocalVectors(DM dm,...) 124147c6ae99SBarry Smith { 124247c6ae99SBarry Smith va_list Argp; 124347c6ae99SBarry Smith PetscErrorCode ierr; 124447c6ae99SBarry Smith struct DMCompositeLink *next; 124547c6ae99SBarry Smith DM_Composite *com = (DM_Composite*)dm->data; 124671b14b3eSStefano Zampini PetscBool flg; 124747c6ae99SBarry Smith 124847c6ae99SBarry Smith PetscFunctionBegin; 124947c6ae99SBarry Smith PetscValidHeaderSpecific(dm,DM_CLASSID,1); 125071b14b3eSStefano Zampini ierr = PetscObjectTypeCompare((PetscObject)dm,DMCOMPOSITE,&flg);CHKERRQ(ierr); 125171b14b3eSStefano Zampini if (!flg) SETERRQ1(PetscObjectComm((PetscObject)dm),PETSC_ERR_USER,"Not for type %s",((PetscObject)dm)->type_name); 125247c6ae99SBarry Smith next = com->next; 125347c6ae99SBarry Smith /* loop over packed objects, handling one at at time */ 125447c6ae99SBarry Smith va_start(Argp,dm); 125547c6ae99SBarry Smith while (next) { 125647c6ae99SBarry Smith Vec *vec; 125747c6ae99SBarry Smith vec = va_arg(Argp, Vec*); 125806930112SJed Brown if (vec) {ierr = DMRestoreLocalVector(next->dm,vec);CHKERRQ(ierr);} 125947c6ae99SBarry Smith next = next->next; 126047c6ae99SBarry Smith } 126147c6ae99SBarry Smith va_end(Argp); 126247c6ae99SBarry Smith PetscFunctionReturn(0); 126347c6ae99SBarry Smith } 126447c6ae99SBarry Smith 126547c6ae99SBarry Smith /* -------------------------------------------------------------------------------------*/ 126647c6ae99SBarry Smith /*@C 12679ae5db72SJed Brown DMCompositeGetEntries - Gets the DM for each entry in a DMComposite. 126847c6ae99SBarry Smith 126947c6ae99SBarry Smith Not Collective 127047c6ae99SBarry Smith 127147c6ae99SBarry Smith Input Parameter: 127247c6ae99SBarry Smith . dm - the packer object 127347c6ae99SBarry Smith 127447c6ae99SBarry Smith Output Parameter: 12759ae5db72SJed Brown . DM ... - the individual entries (DMs) 127647c6ae99SBarry Smith 127747c6ae99SBarry Smith Level: advanced 127847c6ae99SBarry Smith 127995452b02SPatrick Sanan Fortran Notes: 128095452b02SPatrick Sanan Available as DMCompositeGetEntries() for one output DM, DMCompositeGetEntries2() for 2, etc 1281f5f57ec0SBarry Smith 12822fa5ba8aSJed Brown .seealso DMDestroy(), DMCompositeAddDM(), DMCreateGlobalVector(), DMCompositeGetEntriesArray() 12836eb61c8cSJed Brown DMCompositeGather(), DMCompositeCreate(), DMCompositeGetISLocalToGlobalMappings(), DMCompositeGetAccess(), 128447c6ae99SBarry Smith DMCompositeRestoreLocalVectors(), DMCompositeGetLocalVectors(), DMCompositeScatter(), 128547c6ae99SBarry Smith DMCompositeGetLocalVectors(), DMCompositeRestoreLocalVectors() 128647c6ae99SBarry Smith 128747c6ae99SBarry Smith @*/ 12887087cfbeSBarry Smith PetscErrorCode DMCompositeGetEntries(DM dm,...) 128947c6ae99SBarry Smith { 129047c6ae99SBarry Smith va_list Argp; 129147c6ae99SBarry Smith struct DMCompositeLink *next; 129247c6ae99SBarry Smith DM_Composite *com = (DM_Composite*)dm->data; 129371b14b3eSStefano Zampini PetscBool flg; 129471b14b3eSStefano Zampini PetscErrorCode ierr; 129547c6ae99SBarry Smith 129647c6ae99SBarry Smith PetscFunctionBegin; 129747c6ae99SBarry Smith PetscValidHeaderSpecific(dm,DM_CLASSID,1); 129871b14b3eSStefano Zampini ierr = PetscObjectTypeCompare((PetscObject)dm,DMCOMPOSITE,&flg);CHKERRQ(ierr); 129971b14b3eSStefano Zampini if (!flg) SETERRQ1(PetscObjectComm((PetscObject)dm),PETSC_ERR_USER,"Not for type %s",((PetscObject)dm)->type_name); 130047c6ae99SBarry Smith next = com->next; 130147c6ae99SBarry Smith /* loop over packed objects, handling one at at time */ 130247c6ae99SBarry Smith va_start(Argp,dm); 130347c6ae99SBarry Smith while (next) { 130447c6ae99SBarry Smith DM *dmn; 130547c6ae99SBarry Smith dmn = va_arg(Argp, DM*); 13069ae5db72SJed Brown if (dmn) *dmn = next->dm; 130747c6ae99SBarry Smith next = next->next; 130847c6ae99SBarry Smith } 130947c6ae99SBarry Smith va_end(Argp); 131047c6ae99SBarry Smith PetscFunctionReturn(0); 131147c6ae99SBarry Smith } 131247c6ae99SBarry Smith 1313dbab29e1SMark F. Adams /*@C 13142fa5ba8aSJed Brown DMCompositeGetEntriesArray - Gets the DM for each entry in a DMComposite. 13152fa5ba8aSJed Brown 13162fa5ba8aSJed Brown Not Collective 13172fa5ba8aSJed Brown 13182fa5ba8aSJed Brown Input Parameter: 1319907376e6SBarry Smith . dm - the packer object 1320907376e6SBarry Smith 1321907376e6SBarry Smith Output Parameter: 1322907376e6SBarry Smith . dms - array of sufficient length (see DMCompositeGetNumberDM()) to hold the individual DMs 13232fa5ba8aSJed Brown 13242fa5ba8aSJed Brown Level: advanced 13252fa5ba8aSJed Brown 13262fa5ba8aSJed Brown .seealso DMDestroy(), DMCompositeAddDM(), DMCreateGlobalVector(), DMCompositeGetEntries() 13272fa5ba8aSJed Brown DMCompositeGather(), DMCompositeCreate(), DMCompositeGetISLocalToGlobalMappings(), DMCompositeGetAccess(), 13282fa5ba8aSJed Brown DMCompositeRestoreLocalVectors(), DMCompositeGetLocalVectors(), DMCompositeScatter(), 13292fa5ba8aSJed Brown DMCompositeGetLocalVectors(), DMCompositeRestoreLocalVectors() 13302fa5ba8aSJed Brown 13312fa5ba8aSJed Brown @*/ 13322fa5ba8aSJed Brown PetscErrorCode DMCompositeGetEntriesArray(DM dm,DM dms[]) 13332fa5ba8aSJed Brown { 13342fa5ba8aSJed Brown struct DMCompositeLink *next; 13352fa5ba8aSJed Brown DM_Composite *com = (DM_Composite*)dm->data; 13362fa5ba8aSJed Brown PetscInt i; 133771b14b3eSStefano Zampini PetscBool flg; 133871b14b3eSStefano Zampini PetscErrorCode ierr; 13392fa5ba8aSJed Brown 13402fa5ba8aSJed Brown PetscFunctionBegin; 13412fa5ba8aSJed Brown PetscValidHeaderSpecific(dm,DM_CLASSID,1); 134271b14b3eSStefano Zampini ierr = PetscObjectTypeCompare((PetscObject)dm,DMCOMPOSITE,&flg);CHKERRQ(ierr); 134371b14b3eSStefano Zampini if (!flg) SETERRQ1(PetscObjectComm((PetscObject)dm),PETSC_ERR_USER,"Not for type %s",((PetscObject)dm)->type_name); 13442fa5ba8aSJed Brown /* loop over packed objects, handling one at at time */ 13452fa5ba8aSJed Brown for (next=com->next,i=0; next; next=next->next,i++) dms[i] = next->dm; 13462fa5ba8aSJed Brown PetscFunctionReturn(0); 13472fa5ba8aSJed Brown } 13482fa5ba8aSJed Brown 1349e10fd815SStefano Zampini typedef struct { 1350e10fd815SStefano Zampini DM dm; 1351e10fd815SStefano Zampini PetscViewer *subv; 1352e10fd815SStefano Zampini Vec *vecs; 1353e10fd815SStefano Zampini } GLVisViewerCtx; 1354e10fd815SStefano Zampini 1355e10fd815SStefano Zampini static PetscErrorCode DestroyGLVisViewerCtx_Private(void *vctx) 1356e10fd815SStefano Zampini { 1357e10fd815SStefano Zampini GLVisViewerCtx *ctx = (GLVisViewerCtx*)vctx; 1358e10fd815SStefano Zampini PetscInt i,n; 1359e10fd815SStefano Zampini PetscErrorCode ierr; 1360e10fd815SStefano Zampini 1361e10fd815SStefano Zampini PetscFunctionBegin; 1362e10fd815SStefano Zampini ierr = DMCompositeGetNumberDM(ctx->dm,&n);CHKERRQ(ierr); 1363e10fd815SStefano Zampini for (i = 0; i < n; i++) { 1364e10fd815SStefano Zampini ierr = PetscViewerDestroy(&ctx->subv[i]);CHKERRQ(ierr); 1365e10fd815SStefano Zampini } 1366e10fd815SStefano Zampini ierr = PetscFree2(ctx->subv,ctx->vecs);CHKERRQ(ierr); 1367e10fd815SStefano Zampini ierr = DMDestroy(&ctx->dm);CHKERRQ(ierr); 1368e10fd815SStefano Zampini ierr = PetscFree(ctx);CHKERRQ(ierr); 1369e10fd815SStefano Zampini PetscFunctionReturn(0); 1370e10fd815SStefano Zampini } 1371e10fd815SStefano Zampini 1372e10fd815SStefano Zampini static PetscErrorCode DMCompositeSampleGLVisFields_Private(PetscObject oX, PetscInt nf, PetscObject oXfield[], void *vctx) 1373e10fd815SStefano Zampini { 1374e10fd815SStefano Zampini Vec X = (Vec)oX; 1375e10fd815SStefano Zampini GLVisViewerCtx *ctx = (GLVisViewerCtx*)vctx; 1376e10fd815SStefano Zampini PetscInt i,n,cumf; 1377e10fd815SStefano Zampini PetscErrorCode ierr; 1378e10fd815SStefano Zampini 1379e10fd815SStefano Zampini PetscFunctionBegin; 1380e10fd815SStefano Zampini ierr = DMCompositeGetNumberDM(ctx->dm,&n);CHKERRQ(ierr); 1381e10fd815SStefano Zampini ierr = DMCompositeGetAccessArray(ctx->dm,X,n,NULL,ctx->vecs);CHKERRQ(ierr); 1382e10fd815SStefano Zampini for (i = 0, cumf = 0; i < n; i++) { 1383e10fd815SStefano Zampini PetscErrorCode (*g2l)(PetscObject,PetscInt,PetscObject[],void*); 1384e10fd815SStefano Zampini void *fctx; 1385e10fd815SStefano Zampini PetscInt nfi; 1386e10fd815SStefano Zampini 1387e10fd815SStefano Zampini ierr = PetscViewerGLVisGetFields_Private(ctx->subv[i],&nfi,NULL,NULL,&g2l,NULL,&fctx);CHKERRQ(ierr); 1388e10fd815SStefano Zampini if (!nfi) continue; 1389e10fd815SStefano Zampini if (g2l) { 1390e10fd815SStefano Zampini ierr = (*g2l)((PetscObject)ctx->vecs[i],nfi,oXfield+cumf,fctx);CHKERRQ(ierr); 1391e10fd815SStefano Zampini } else { 1392e10fd815SStefano Zampini ierr = VecCopy(ctx->vecs[i],(Vec)(oXfield[cumf]));CHKERRQ(ierr); 1393e10fd815SStefano Zampini } 1394e10fd815SStefano Zampini cumf += nfi; 1395e10fd815SStefano Zampini } 1396e10fd815SStefano Zampini ierr = DMCompositeRestoreAccessArray(ctx->dm,X,n,NULL,ctx->vecs);CHKERRQ(ierr); 1397e10fd815SStefano Zampini PetscFunctionReturn(0); 1398e10fd815SStefano Zampini } 1399e10fd815SStefano Zampini 1400e10fd815SStefano Zampini static PetscErrorCode DMSetUpGLVisViewer_Composite(PetscObject odm, PetscViewer viewer) 1401e10fd815SStefano Zampini { 1402e10fd815SStefano Zampini DM dm = (DM)odm, *dms; 1403e10fd815SStefano Zampini Vec *Ufds; 1404e10fd815SStefano Zampini GLVisViewerCtx *ctx; 1405e10fd815SStefano Zampini PetscInt i,n,tnf,*sdim; 1406e10fd815SStefano Zampini char **fecs; 1407e10fd815SStefano Zampini PetscErrorCode ierr; 1408e10fd815SStefano Zampini 1409e10fd815SStefano Zampini PetscFunctionBegin; 1410e10fd815SStefano Zampini ierr = PetscNew(&ctx);CHKERRQ(ierr); 1411e10fd815SStefano Zampini ierr = PetscObjectReference((PetscObject)dm);CHKERRQ(ierr); 1412e10fd815SStefano Zampini ctx->dm = dm; 1413e10fd815SStefano Zampini ierr = DMCompositeGetNumberDM(dm,&n);CHKERRQ(ierr); 1414e10fd815SStefano Zampini ierr = PetscMalloc1(n,&dms);CHKERRQ(ierr); 1415e10fd815SStefano Zampini ierr = DMCompositeGetEntriesArray(dm,dms);CHKERRQ(ierr); 1416e10fd815SStefano Zampini ierr = PetscMalloc2(n,&ctx->subv,n,&ctx->vecs);CHKERRQ(ierr); 1417e10fd815SStefano Zampini for (i = 0, tnf = 0; i < n; i++) { 1418e10fd815SStefano Zampini PetscInt nf; 1419e10fd815SStefano Zampini 1420e10fd815SStefano Zampini ierr = PetscViewerCreate(PetscObjectComm(odm),&ctx->subv[i]);CHKERRQ(ierr); 1421e10fd815SStefano Zampini ierr = PetscViewerSetType(ctx->subv[i],PETSCVIEWERGLVIS);CHKERRQ(ierr); 1422e10fd815SStefano Zampini ierr = PetscViewerGLVisSetDM_Private(ctx->subv[i],(PetscObject)dms[i]);CHKERRQ(ierr); 1423e10fd815SStefano Zampini ierr = PetscViewerGLVisGetFields_Private(ctx->subv[i],&nf,NULL,NULL,NULL,NULL,NULL);CHKERRQ(ierr); 1424e10fd815SStefano Zampini tnf += nf; 1425e10fd815SStefano Zampini } 1426e10fd815SStefano Zampini ierr = PetscFree(dms);CHKERRQ(ierr); 1427e10fd815SStefano Zampini ierr = PetscMalloc3(tnf,&fecs,tnf,&sdim,tnf,&Ufds);CHKERRQ(ierr); 1428e10fd815SStefano Zampini for (i = 0, tnf = 0; i < n; i++) { 1429e10fd815SStefano Zampini PetscInt *sd,nf,f; 1430e10fd815SStefano Zampini const char **fec; 1431e10fd815SStefano Zampini Vec *Uf; 1432e10fd815SStefano Zampini 1433e10fd815SStefano Zampini ierr = PetscViewerGLVisGetFields_Private(ctx->subv[i],&nf,&fec,&sd,NULL,(PetscObject**)&Uf,NULL);CHKERRQ(ierr); 1434e10fd815SStefano Zampini for (f = 0; f < nf; f++) { 1435e10fd815SStefano Zampini ierr = PetscStrallocpy(fec[f],&fecs[tnf+f]);CHKERRQ(ierr); 1436e10fd815SStefano Zampini Ufds[tnf+f] = Uf[f]; 1437e10fd815SStefano Zampini sdim[tnf+f] = sd[f]; 1438e10fd815SStefano Zampini } 1439e10fd815SStefano Zampini tnf += nf; 1440e10fd815SStefano Zampini } 1441e10fd815SStefano Zampini ierr = PetscViewerGLVisSetFields(viewer,tnf,(const char**)fecs,sdim,DMCompositeSampleGLVisFields_Private,(PetscObject*)Ufds,ctx,DestroyGLVisViewerCtx_Private);CHKERRQ(ierr); 1442e10fd815SStefano Zampini for (i = 0; i < tnf; i++) { 1443e10fd815SStefano Zampini ierr = PetscFree(fecs[i]);CHKERRQ(ierr); 1444e10fd815SStefano Zampini } 1445e10fd815SStefano Zampini ierr = PetscFree3(fecs,sdim,Ufds);CHKERRQ(ierr); 1446e10fd815SStefano Zampini PetscFunctionReturn(0); 1447e10fd815SStefano Zampini } 1448e10fd815SStefano Zampini 14497087cfbeSBarry Smith PetscErrorCode DMRefine_Composite(DM dmi,MPI_Comm comm,DM *fine) 145047c6ae99SBarry Smith { 145147c6ae99SBarry Smith PetscErrorCode ierr; 145247c6ae99SBarry Smith struct DMCompositeLink *next; 145347c6ae99SBarry Smith DM_Composite *com = (DM_Composite*)dmi->data; 145447c6ae99SBarry Smith DM dm; 145547c6ae99SBarry Smith 145647c6ae99SBarry Smith PetscFunctionBegin; 145747c6ae99SBarry Smith PetscValidHeaderSpecific(dmi,DM_CLASSID,1); 1458ce94432eSBarry Smith if (comm == MPI_COMM_NULL) { 1459ce94432eSBarry Smith ierr = PetscObjectGetComm((PetscObject)dmi,&comm);CHKERRQ(ierr); 1460ce94432eSBarry Smith } 14612ce3a92bSJed Brown ierr = DMSetUp(dmi);CHKERRQ(ierr); 146247c6ae99SBarry Smith next = com->next; 146347c6ae99SBarry Smith ierr = DMCompositeCreate(comm,fine);CHKERRQ(ierr); 146447c6ae99SBarry Smith 146547c6ae99SBarry Smith /* loop over packed objects, handling one at at time */ 146647c6ae99SBarry Smith while (next) { 146747c6ae99SBarry Smith ierr = DMRefine(next->dm,comm,&dm);CHKERRQ(ierr); 146847c6ae99SBarry Smith ierr = DMCompositeAddDM(*fine,dm);CHKERRQ(ierr); 146947c6ae99SBarry Smith ierr = PetscObjectDereference((PetscObject)dm);CHKERRQ(ierr); 147047c6ae99SBarry Smith next = next->next; 147147c6ae99SBarry Smith } 147247c6ae99SBarry Smith PetscFunctionReturn(0); 147347c6ae99SBarry Smith } 147447c6ae99SBarry Smith 147514354c39SJed Brown PetscErrorCode DMCoarsen_Composite(DM dmi,MPI_Comm comm,DM *fine) 147614354c39SJed Brown { 147714354c39SJed Brown PetscErrorCode ierr; 147814354c39SJed Brown struct DMCompositeLink *next; 147914354c39SJed Brown DM_Composite *com = (DM_Composite*)dmi->data; 148014354c39SJed Brown DM dm; 148114354c39SJed Brown 148214354c39SJed Brown PetscFunctionBegin; 148314354c39SJed Brown PetscValidHeaderSpecific(dmi,DM_CLASSID,1); 14842ce3a92bSJed Brown ierr = DMSetUp(dmi);CHKERRQ(ierr); 14852ee06e3bSJed Brown if (comm == MPI_COMM_NULL) { 148625296bd5SBarry Smith ierr = PetscObjectGetComm((PetscObject)dmi,&comm);CHKERRQ(ierr); 148725296bd5SBarry Smith } 148814354c39SJed Brown next = com->next; 148914354c39SJed Brown ierr = DMCompositeCreate(comm,fine);CHKERRQ(ierr); 149014354c39SJed Brown 149114354c39SJed Brown /* loop over packed objects, handling one at at time */ 149214354c39SJed Brown while (next) { 149314354c39SJed Brown ierr = DMCoarsen(next->dm,comm,&dm);CHKERRQ(ierr); 149414354c39SJed Brown ierr = DMCompositeAddDM(*fine,dm);CHKERRQ(ierr); 149514354c39SJed Brown ierr = PetscObjectDereference((PetscObject)dm);CHKERRQ(ierr); 149614354c39SJed Brown next = next->next; 149714354c39SJed Brown } 149814354c39SJed Brown PetscFunctionReturn(0); 149914354c39SJed Brown } 150047c6ae99SBarry Smith 1501e727c939SJed Brown PetscErrorCode DMCreateInterpolation_Composite(DM coarse,DM fine,Mat *A,Vec *v) 150247c6ae99SBarry Smith { 150347c6ae99SBarry Smith PetscErrorCode ierr; 15049ae5db72SJed Brown PetscInt m,n,M,N,nDM,i; 150547c6ae99SBarry Smith struct DMCompositeLink *nextc; 150647c6ae99SBarry Smith struct DMCompositeLink *nextf; 150725296bd5SBarry Smith Vec gcoarse,gfine,*vecs; 150847c6ae99SBarry Smith DM_Composite *comcoarse = (DM_Composite*)coarse->data; 150947c6ae99SBarry Smith DM_Composite *comfine = (DM_Composite*)fine->data; 15109ae5db72SJed Brown Mat *mats; 151147c6ae99SBarry Smith 151247c6ae99SBarry Smith PetscFunctionBegin; 151347c6ae99SBarry Smith PetscValidHeaderSpecific(coarse,DM_CLASSID,1); 151447c6ae99SBarry Smith PetscValidHeaderSpecific(fine,DM_CLASSID,2); 1515f692024eSJed Brown ierr = DMSetUp(coarse);CHKERRQ(ierr); 1516f692024eSJed Brown ierr = DMSetUp(fine);CHKERRQ(ierr); 151747c6ae99SBarry Smith /* use global vectors only for determining matrix layout */ 15189ae5db72SJed Brown ierr = DMGetGlobalVector(coarse,&gcoarse);CHKERRQ(ierr); 15199ae5db72SJed Brown ierr = DMGetGlobalVector(fine,&gfine);CHKERRQ(ierr); 152047c6ae99SBarry Smith ierr = VecGetLocalSize(gcoarse,&n);CHKERRQ(ierr); 152147c6ae99SBarry Smith ierr = VecGetLocalSize(gfine,&m);CHKERRQ(ierr); 152247c6ae99SBarry Smith ierr = VecGetSize(gcoarse,&N);CHKERRQ(ierr); 152347c6ae99SBarry Smith ierr = VecGetSize(gfine,&M);CHKERRQ(ierr); 15249ae5db72SJed Brown ierr = DMRestoreGlobalVector(coarse,&gcoarse);CHKERRQ(ierr); 15259ae5db72SJed Brown ierr = DMRestoreGlobalVector(fine,&gfine);CHKERRQ(ierr); 152647c6ae99SBarry Smith 15279ae5db72SJed Brown nDM = comfine->nDM; 1528ce94432eSBarry Smith if (nDM != comcoarse->nDM) SETERRQ2(PetscObjectComm((PetscObject)fine),PETSC_ERR_ARG_INCOMP,"Fine DMComposite has %D entries, but coarse has %D",nDM,comcoarse->nDM); 15291795a4d1SJed Brown ierr = PetscCalloc1(nDM*nDM,&mats);CHKERRQ(ierr); 153025296bd5SBarry Smith if (v) { 15311795a4d1SJed Brown ierr = PetscCalloc1(nDM,&vecs);CHKERRQ(ierr); 153225296bd5SBarry Smith } 153347c6ae99SBarry Smith 153447c6ae99SBarry Smith /* loop over packed objects, handling one at at time */ 15359ae5db72SJed Brown for (nextc=comcoarse->next,nextf=comfine->next,i=0; nextc; nextc=nextc->next,nextf=nextf->next,i++) { 153625296bd5SBarry Smith if (!v) { 15370298fd71SBarry Smith ierr = DMCreateInterpolation(nextc->dm,nextf->dm,&mats[i*nDM+i],NULL);CHKERRQ(ierr); 153825296bd5SBarry Smith } else { 153925296bd5SBarry Smith ierr = DMCreateInterpolation(nextc->dm,nextf->dm,&mats[i*nDM+i],&vecs[i]);CHKERRQ(ierr); 154025296bd5SBarry Smith } 154147c6ae99SBarry Smith } 1542ce94432eSBarry Smith ierr = MatCreateNest(PetscObjectComm((PetscObject)fine),nDM,NULL,nDM,NULL,mats,A);CHKERRQ(ierr); 154325296bd5SBarry Smith if (v) { 1544ce94432eSBarry Smith ierr = VecCreateNest(PetscObjectComm((PetscObject)fine),nDM,NULL,vecs,v);CHKERRQ(ierr); 154525296bd5SBarry Smith } 15469ae5db72SJed Brown for (i=0; i<nDM*nDM; i++) {ierr = MatDestroy(&mats[i]);CHKERRQ(ierr);} 15479ae5db72SJed Brown ierr = PetscFree(mats);CHKERRQ(ierr); 154825296bd5SBarry Smith if (v) { 154925296bd5SBarry Smith for (i=0; i<nDM; i++) {ierr = VecDestroy(&vecs[i]);CHKERRQ(ierr);} 155025296bd5SBarry Smith ierr = PetscFree(vecs);CHKERRQ(ierr); 155125296bd5SBarry Smith } 155247c6ae99SBarry Smith PetscFunctionReturn(0); 155347c6ae99SBarry Smith } 155447c6ae99SBarry Smith 1555184d77edSJed Brown static PetscErrorCode DMGetLocalToGlobalMapping_Composite(DM dm) 15561411c6eeSJed Brown { 15571411c6eeSJed Brown DM_Composite *com = (DM_Composite*)dm->data; 15581411c6eeSJed Brown ISLocalToGlobalMapping *ltogs; 1559f7efa3c7SJed Brown PetscInt i; 15601411c6eeSJed Brown PetscErrorCode ierr; 15611411c6eeSJed Brown 15621411c6eeSJed Brown PetscFunctionBegin; 15631411c6eeSJed Brown /* Set the ISLocalToGlobalMapping on the new matrix */ 15641411c6eeSJed Brown ierr = DMCompositeGetISLocalToGlobalMappings(dm,<ogs);CHKERRQ(ierr); 1565ce94432eSBarry Smith ierr = ISLocalToGlobalMappingConcatenate(PetscObjectComm((PetscObject)dm),com->nDM,ltogs,&dm->ltogmap);CHKERRQ(ierr); 15669ae5db72SJed Brown for (i=0; i<com->nDM; i++) {ierr = ISLocalToGlobalMappingDestroy(<ogs[i]);CHKERRQ(ierr);} 15671411c6eeSJed Brown ierr = PetscFree(ltogs);CHKERRQ(ierr); 15681411c6eeSJed Brown PetscFunctionReturn(0); 15691411c6eeSJed Brown } 15701411c6eeSJed Brown 1571b412c318SBarry Smith PetscErrorCode DMCreateColoring_Composite(DM dm,ISColoringType ctype,ISColoring *coloring) 157247c6ae99SBarry Smith { 157347c6ae99SBarry Smith PetscErrorCode ierr; 157447c6ae99SBarry Smith PetscInt n,i,cnt; 157547c6ae99SBarry Smith ISColoringValue *colors; 157647c6ae99SBarry Smith PetscBool dense = PETSC_FALSE; 157747c6ae99SBarry Smith ISColoringValue maxcol = 0; 157847c6ae99SBarry Smith DM_Composite *com = (DM_Composite*)dm->data; 157947c6ae99SBarry Smith 158047c6ae99SBarry Smith PetscFunctionBegin; 158147c6ae99SBarry Smith PetscValidHeaderSpecific(dm,DM_CLASSID,1); 15825bdb020cSBarry Smith if (ctype == IS_COLORING_LOCAL) SETERRQ(PetscObjectComm((PetscObject)dm),PETSC_ERR_SUP,"Only global coloring supported"); 1583e3247f34SBarry Smith else if (ctype == IS_COLORING_GLOBAL) { 158447c6ae99SBarry Smith n = com->n; 1585ce94432eSBarry Smith } else SETERRQ(PetscObjectComm((PetscObject)dm),PETSC_ERR_ARG_OUTOFRANGE,"Unknown ISColoringType"); 1586785e854fSJed Brown ierr = PetscMalloc1(n,&colors);CHKERRQ(ierr); /* freed in ISColoringDestroy() */ 158747c6ae99SBarry Smith 1588c5929fdfSBarry Smith ierr = PetscOptionsGetBool(((PetscObject)dm)->options,((PetscObject)dm)->prefix,"-dmcomposite_dense_jacobian",&dense,NULL);CHKERRQ(ierr); 158947c6ae99SBarry Smith if (dense) { 159047c6ae99SBarry Smith for (i=0; i<n; i++) { 159147c6ae99SBarry Smith colors[i] = (ISColoringValue)(com->rstart + i); 159247c6ae99SBarry Smith } 159347c6ae99SBarry Smith maxcol = com->N; 159447c6ae99SBarry Smith } else { 159547c6ae99SBarry Smith struct DMCompositeLink *next = com->next; 159647c6ae99SBarry Smith PetscMPIInt rank; 159747c6ae99SBarry Smith 1598ffc4695bSBarry Smith ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)dm),&rank);CHKERRMPI(ierr); 159947c6ae99SBarry Smith cnt = 0; 160047c6ae99SBarry Smith while (next) { 160147c6ae99SBarry Smith ISColoring lcoloring; 160247c6ae99SBarry Smith 1603b412c318SBarry Smith ierr = DMCreateColoring(next->dm,IS_COLORING_GLOBAL,&lcoloring);CHKERRQ(ierr); 160447c6ae99SBarry Smith for (i=0; i<lcoloring->N; i++) { 160547c6ae99SBarry Smith colors[cnt++] = maxcol + lcoloring->colors[i]; 160647c6ae99SBarry Smith } 160747c6ae99SBarry Smith maxcol += lcoloring->n; 1608fcfd50ebSBarry Smith ierr = ISColoringDestroy(&lcoloring);CHKERRQ(ierr); 160947c6ae99SBarry Smith next = next->next; 161047c6ae99SBarry Smith } 161147c6ae99SBarry Smith } 1612aaf3ff59SMatthew G. Knepley ierr = ISColoringCreate(PetscObjectComm((PetscObject)dm),maxcol,n,colors,PETSC_OWN_POINTER,coloring);CHKERRQ(ierr); 161347c6ae99SBarry Smith PetscFunctionReturn(0); 161447c6ae99SBarry Smith } 161547c6ae99SBarry Smith 16167087cfbeSBarry Smith PetscErrorCode DMGlobalToLocalBegin_Composite(DM dm,Vec gvec,InsertMode mode,Vec lvec) 161747c6ae99SBarry Smith { 161847c6ae99SBarry Smith PetscErrorCode ierr; 161947c6ae99SBarry Smith struct DMCompositeLink *next; 162047c6ae99SBarry Smith PetscScalar *garray,*larray; 162147c6ae99SBarry Smith DM_Composite *com = (DM_Composite*)dm->data; 162247c6ae99SBarry Smith 162347c6ae99SBarry Smith PetscFunctionBegin; 162447c6ae99SBarry Smith PetscValidHeaderSpecific(dm,DM_CLASSID,1); 162547c6ae99SBarry Smith PetscValidHeaderSpecific(gvec,VEC_CLASSID,2); 162639d35262SVincent Le Chenadec 162747c6ae99SBarry Smith if (!com->setup) { 1628d7bf68aeSBarry Smith ierr = DMSetUp(dm);CHKERRQ(ierr); 162947c6ae99SBarry Smith } 163039d35262SVincent Le Chenadec 163147c6ae99SBarry Smith ierr = VecGetArray(gvec,&garray);CHKERRQ(ierr); 163247c6ae99SBarry Smith ierr = VecGetArray(lvec,&larray);CHKERRQ(ierr); 163347c6ae99SBarry Smith 163447c6ae99SBarry Smith /* loop over packed objects, handling one at at time */ 163539d35262SVincent Le Chenadec next = com->next; 163647c6ae99SBarry Smith while (next) { 163747c6ae99SBarry Smith Vec local,global; 163847c6ae99SBarry Smith PetscInt N; 163947c6ae99SBarry Smith 164047c6ae99SBarry Smith ierr = DMGetGlobalVector(next->dm,&global);CHKERRQ(ierr); 164147c6ae99SBarry Smith ierr = VecGetLocalSize(global,&N);CHKERRQ(ierr); 164247c6ae99SBarry Smith ierr = VecPlaceArray(global,garray);CHKERRQ(ierr); 164347c6ae99SBarry Smith ierr = DMGetLocalVector(next->dm,&local);CHKERRQ(ierr); 164447c6ae99SBarry Smith ierr = VecPlaceArray(local,larray);CHKERRQ(ierr); 164547c6ae99SBarry Smith ierr = DMGlobalToLocalBegin(next->dm,global,mode,local);CHKERRQ(ierr); 164647c6ae99SBarry Smith ierr = DMGlobalToLocalEnd(next->dm,global,mode,local);CHKERRQ(ierr); 164747c6ae99SBarry Smith ierr = VecResetArray(global);CHKERRQ(ierr); 164847c6ae99SBarry Smith ierr = VecResetArray(local);CHKERRQ(ierr); 164947c6ae99SBarry Smith ierr = DMRestoreGlobalVector(next->dm,&global);CHKERRQ(ierr); 165039d35262SVincent Le Chenadec ierr = DMRestoreLocalVector(next->dm,&local);CHKERRQ(ierr); 165139d35262SVincent Le Chenadec 165206ebdd98SJed Brown larray += next->nlocal; 165339d35262SVincent Le Chenadec garray += next->n; 165447c6ae99SBarry Smith next = next->next; 165547c6ae99SBarry Smith } 165647c6ae99SBarry Smith 16570298fd71SBarry Smith ierr = VecRestoreArray(gvec,NULL);CHKERRQ(ierr); 16580298fd71SBarry Smith ierr = VecRestoreArray(lvec,NULL);CHKERRQ(ierr); 165947c6ae99SBarry Smith PetscFunctionReturn(0); 166047c6ae99SBarry Smith } 166147c6ae99SBarry Smith 16627087cfbeSBarry Smith PetscErrorCode DMGlobalToLocalEnd_Composite(DM dm,Vec gvec,InsertMode mode,Vec lvec) 16630c010503SBarry Smith { 16640c010503SBarry Smith PetscFunctionBegin; 166539d35262SVincent Le Chenadec PetscValidHeaderSpecific(dm,DM_CLASSID,1); 166639d35262SVincent Le Chenadec PetscValidHeaderSpecific(gvec,VEC_CLASSID,2); 166739d35262SVincent Le Chenadec PetscValidHeaderSpecific(lvec,VEC_CLASSID,4); 166839d35262SVincent Le Chenadec PetscFunctionReturn(0); 166939d35262SVincent Le Chenadec } 167039d35262SVincent Le Chenadec 167139d35262SVincent Le Chenadec PetscErrorCode DMLocalToGlobalBegin_Composite(DM dm,Vec lvec,InsertMode mode,Vec gvec) 167239d35262SVincent Le Chenadec { 167339d35262SVincent Le Chenadec PetscErrorCode ierr; 167439d35262SVincent Le Chenadec struct DMCompositeLink *next; 167539d35262SVincent Le Chenadec PetscScalar *larray,*garray; 167639d35262SVincent Le Chenadec DM_Composite *com = (DM_Composite*)dm->data; 167739d35262SVincent Le Chenadec 167839d35262SVincent Le Chenadec PetscFunctionBegin; 167939d35262SVincent Le Chenadec PetscValidHeaderSpecific(dm,DM_CLASSID,1); 168039d35262SVincent Le Chenadec PetscValidHeaderSpecific(lvec,VEC_CLASSID,2); 168139d35262SVincent Le Chenadec PetscValidHeaderSpecific(gvec,VEC_CLASSID,4); 168239d35262SVincent Le Chenadec 168339d35262SVincent Le Chenadec if (!com->setup) { 168439d35262SVincent Le Chenadec ierr = DMSetUp(dm);CHKERRQ(ierr); 168539d35262SVincent Le Chenadec } 168639d35262SVincent Le Chenadec 168739d35262SVincent Le Chenadec ierr = VecGetArray(lvec,&larray);CHKERRQ(ierr); 168839d35262SVincent Le Chenadec ierr = VecGetArray(gvec,&garray);CHKERRQ(ierr); 168939d35262SVincent Le Chenadec 169039d35262SVincent Le Chenadec /* loop over packed objects, handling one at at time */ 169139d35262SVincent Le Chenadec next = com->next; 169239d35262SVincent Le Chenadec while (next) { 169339d35262SVincent Le Chenadec Vec global,local; 169439d35262SVincent Le Chenadec 169539d35262SVincent Le Chenadec ierr = DMGetLocalVector(next->dm,&local);CHKERRQ(ierr); 169639d35262SVincent Le Chenadec ierr = VecPlaceArray(local,larray);CHKERRQ(ierr); 169739d35262SVincent Le Chenadec ierr = DMGetGlobalVector(next->dm,&global);CHKERRQ(ierr); 169839d35262SVincent Le Chenadec ierr = VecPlaceArray(global,garray);CHKERRQ(ierr); 169939d35262SVincent Le Chenadec ierr = DMLocalToGlobalBegin(next->dm,local,mode,global);CHKERRQ(ierr); 170039d35262SVincent Le Chenadec ierr = DMLocalToGlobalEnd(next->dm,local,mode,global);CHKERRQ(ierr); 170139d35262SVincent Le Chenadec ierr = VecResetArray(local);CHKERRQ(ierr); 170239d35262SVincent Le Chenadec ierr = VecResetArray(global);CHKERRQ(ierr); 170339d35262SVincent Le Chenadec ierr = DMRestoreGlobalVector(next->dm,&global);CHKERRQ(ierr); 170439d35262SVincent Le Chenadec ierr = DMRestoreLocalVector(next->dm,&local);CHKERRQ(ierr); 170539d35262SVincent Le Chenadec 170639d35262SVincent Le Chenadec garray += next->n; 170739d35262SVincent Le Chenadec larray += next->nlocal; 170839d35262SVincent Le Chenadec next = next->next; 170939d35262SVincent Le Chenadec } 171039d35262SVincent Le Chenadec 171139d35262SVincent Le Chenadec ierr = VecRestoreArray(gvec,NULL);CHKERRQ(ierr); 171239d35262SVincent Le Chenadec ierr = VecRestoreArray(lvec,NULL);CHKERRQ(ierr); 171339d35262SVincent Le Chenadec 171439d35262SVincent Le Chenadec PetscFunctionReturn(0); 171539d35262SVincent Le Chenadec } 171639d35262SVincent Le Chenadec 171739d35262SVincent Le Chenadec PetscErrorCode DMLocalToGlobalEnd_Composite(DM dm,Vec lvec,InsertMode mode,Vec gvec) 171839d35262SVincent Le Chenadec { 171939d35262SVincent Le Chenadec PetscFunctionBegin; 172039d35262SVincent Le Chenadec PetscValidHeaderSpecific(dm,DM_CLASSID,1); 172139d35262SVincent Le Chenadec PetscValidHeaderSpecific(lvec,VEC_CLASSID,2); 172239d35262SVincent Le Chenadec PetscValidHeaderSpecific(gvec,VEC_CLASSID,4); 172339d35262SVincent Le Chenadec PetscFunctionReturn(0); 172439d35262SVincent Le Chenadec } 172539d35262SVincent Le Chenadec 172639d35262SVincent Le Chenadec PetscErrorCode DMLocalToLocalBegin_Composite(DM dm,Vec vec1,InsertMode mode,Vec vec2) 172739d35262SVincent Le Chenadec { 172839d35262SVincent Le Chenadec PetscErrorCode ierr; 172939d35262SVincent Le Chenadec struct DMCompositeLink *next; 173039d35262SVincent Le Chenadec PetscScalar *array1,*array2; 173139d35262SVincent Le Chenadec DM_Composite *com = (DM_Composite*)dm->data; 173239d35262SVincent Le Chenadec 173339d35262SVincent Le Chenadec PetscFunctionBegin; 173439d35262SVincent Le Chenadec PetscValidHeaderSpecific(dm,DM_CLASSID,1); 173539d35262SVincent Le Chenadec PetscValidHeaderSpecific(vec1,VEC_CLASSID,2); 173639d35262SVincent Le Chenadec PetscValidHeaderSpecific(vec2,VEC_CLASSID,4); 173739d35262SVincent Le Chenadec 173839d35262SVincent Le Chenadec if (!com->setup) { 173939d35262SVincent Le Chenadec ierr = DMSetUp(dm);CHKERRQ(ierr); 174039d35262SVincent Le Chenadec } 174139d35262SVincent Le Chenadec 174239d35262SVincent Le Chenadec ierr = VecGetArray(vec1,&array1);CHKERRQ(ierr); 174339d35262SVincent Le Chenadec ierr = VecGetArray(vec2,&array2);CHKERRQ(ierr); 174439d35262SVincent Le Chenadec 174539d35262SVincent Le Chenadec /* loop over packed objects, handling one at at time */ 174639d35262SVincent Le Chenadec next = com->next; 174739d35262SVincent Le Chenadec while (next) { 174839d35262SVincent Le Chenadec Vec local1,local2; 174939d35262SVincent Le Chenadec 175039d35262SVincent Le Chenadec ierr = DMGetLocalVector(next->dm,&local1);CHKERRQ(ierr); 175139d35262SVincent Le Chenadec ierr = VecPlaceArray(local1,array1);CHKERRQ(ierr); 175239d35262SVincent Le Chenadec ierr = DMGetLocalVector(next->dm,&local2);CHKERRQ(ierr); 175339d35262SVincent Le Chenadec ierr = VecPlaceArray(local2,array2);CHKERRQ(ierr); 175439d35262SVincent Le Chenadec ierr = DMLocalToLocalBegin(next->dm,local1,mode,local2);CHKERRQ(ierr); 175539d35262SVincent Le Chenadec ierr = DMLocalToLocalEnd(next->dm,local1,mode,local2);CHKERRQ(ierr); 175639d35262SVincent Le Chenadec ierr = VecResetArray(local2);CHKERRQ(ierr); 175739d35262SVincent Le Chenadec ierr = DMRestoreLocalVector(next->dm,&local2);CHKERRQ(ierr); 175839d35262SVincent Le Chenadec ierr = VecResetArray(local1);CHKERRQ(ierr); 175939d35262SVincent Le Chenadec ierr = DMRestoreLocalVector(next->dm,&local1);CHKERRQ(ierr); 176039d35262SVincent Le Chenadec 176139d35262SVincent Le Chenadec array1 += next->nlocal; 176239d35262SVincent Le Chenadec array2 += next->nlocal; 176339d35262SVincent Le Chenadec next = next->next; 176439d35262SVincent Le Chenadec } 176539d35262SVincent Le Chenadec 176639d35262SVincent Le Chenadec ierr = VecRestoreArray(vec1,NULL);CHKERRQ(ierr); 176739d35262SVincent Le Chenadec ierr = VecRestoreArray(vec2,NULL);CHKERRQ(ierr); 176839d35262SVincent Le Chenadec 176939d35262SVincent Le Chenadec PetscFunctionReturn(0); 177039d35262SVincent Le Chenadec } 177139d35262SVincent Le Chenadec 177239d35262SVincent Le Chenadec PetscErrorCode DMLocalToLocalEnd_Composite(DM dm,Vec lvec,InsertMode mode,Vec gvec) 177339d35262SVincent Le Chenadec { 177439d35262SVincent Le Chenadec PetscFunctionBegin; 177539d35262SVincent Le Chenadec PetscValidHeaderSpecific(dm,DM_CLASSID,1); 177639d35262SVincent Le Chenadec PetscValidHeaderSpecific(lvec,VEC_CLASSID,2); 177739d35262SVincent Le Chenadec PetscValidHeaderSpecific(gvec,VEC_CLASSID,4); 17780c010503SBarry Smith PetscFunctionReturn(0); 17790c010503SBarry Smith } 178047c6ae99SBarry Smith 17816ae3a549SBarry Smith /*MC 17826ae3a549SBarry Smith DMCOMPOSITE = "composite" - A DM object that is used to manage data for a collection of DMs 17836ae3a549SBarry Smith 17846ae3a549SBarry Smith Level: intermediate 17856ae3a549SBarry Smith 17861abcec8cSBarry Smith .seealso: DMType, DM, DMDACreate(), DMCreate(), DMSetType(), DMCompositeCreate() 17876ae3a549SBarry Smith M*/ 17886ae3a549SBarry Smith 17898cc058d9SJed Brown PETSC_EXTERN PetscErrorCode DMCreate_Composite(DM p) 1790a4121054SBarry Smith { 1791a4121054SBarry Smith PetscErrorCode ierr; 1792a4121054SBarry Smith DM_Composite *com; 1793a4121054SBarry Smith 1794a4121054SBarry Smith PetscFunctionBegin; 1795b00a9115SJed Brown ierr = PetscNewLog(p,&com);CHKERRQ(ierr); 1796a4121054SBarry Smith p->data = com; 1797a4121054SBarry Smith com->n = 0; 17987ac2b803SAlex Fikl com->nghost = 0; 17990298fd71SBarry Smith com->next = NULL; 1800a4121054SBarry Smith com->nDM = 0; 1801a4121054SBarry Smith 1802a4121054SBarry Smith p->ops->createglobalvector = DMCreateGlobalVector_Composite; 1803a4121054SBarry Smith p->ops->createlocalvector = DMCreateLocalVector_Composite; 1804184d77edSJed Brown p->ops->getlocaltoglobalmapping = DMGetLocalToGlobalMapping_Composite; 18054d343eeaSMatthew G Knepley p->ops->createfieldis = DMCreateFieldIS_Composite; 180616621825SDmitry Karpeev p->ops->createfielddecomposition = DMCreateFieldDecomposition_Composite; 1807a4121054SBarry Smith p->ops->refine = DMRefine_Composite; 180814354c39SJed Brown p->ops->coarsen = DMCoarsen_Composite; 180925296bd5SBarry Smith p->ops->createinterpolation = DMCreateInterpolation_Composite; 181025296bd5SBarry Smith p->ops->creatematrix = DMCreateMatrix_Composite; 1811e727c939SJed Brown p->ops->getcoloring = DMCreateColoring_Composite; 1812a4121054SBarry Smith p->ops->globaltolocalbegin = DMGlobalToLocalBegin_Composite; 1813a4121054SBarry Smith p->ops->globaltolocalend = DMGlobalToLocalEnd_Composite; 181439d35262SVincent Le Chenadec p->ops->localtoglobalbegin = DMLocalToGlobalBegin_Composite; 181539d35262SVincent Le Chenadec p->ops->localtoglobalend = DMLocalToGlobalEnd_Composite; 181639d35262SVincent Le Chenadec p->ops->localtolocalbegin = DMLocalToLocalBegin_Composite; 181739d35262SVincent Le Chenadec p->ops->localtolocalend = DMLocalToLocalEnd_Composite; 1818a4121054SBarry Smith p->ops->destroy = DMDestroy_Composite; 1819a4121054SBarry Smith p->ops->view = DMView_Composite; 1820a4121054SBarry Smith p->ops->setup = DMSetUp_Composite; 1821e10fd815SStefano Zampini 1822e10fd815SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)p,"DMSetUpGLVisViewer_C",DMSetUpGLVisViewer_Composite);CHKERRQ(ierr); 1823a4121054SBarry Smith PetscFunctionReturn(0); 1824a4121054SBarry Smith } 1825a4121054SBarry Smith 18261fd49c25SBarry Smith /*@ 18270c010503SBarry Smith DMCompositeCreate - Creates a vector packer, used to generate "composite" 18280c010503SBarry Smith vectors made up of several subvectors. 18290c010503SBarry Smith 1830d083f849SBarry Smith Collective 183147c6ae99SBarry Smith 183247c6ae99SBarry Smith Input Parameter: 18330c010503SBarry Smith . comm - the processors that will share the global vector 18340c010503SBarry Smith 18350c010503SBarry Smith Output Parameters: 18360c010503SBarry Smith . packer - the packer object 183747c6ae99SBarry Smith 183847c6ae99SBarry Smith Level: advanced 183947c6ae99SBarry Smith 18401abcec8cSBarry Smith .seealso DMDestroy(), DMCompositeAddDM(), DMCompositeScatter(), DMCOMPOSITE,DMCreate() 18416eb61c8cSJed Brown DMCompositeGather(), DMCreateGlobalVector(), DMCompositeGetISLocalToGlobalMappings(), DMCompositeGetAccess() 184247c6ae99SBarry Smith DMCompositeGetLocalVectors(), DMCompositeRestoreLocalVectors(), DMCompositeGetEntries() 184347c6ae99SBarry Smith 184447c6ae99SBarry Smith @*/ 18457087cfbeSBarry Smith PetscErrorCode DMCompositeCreate(MPI_Comm comm,DM *packer) 184647c6ae99SBarry Smith { 18470c010503SBarry Smith PetscErrorCode ierr; 18480c010503SBarry Smith 184947c6ae99SBarry Smith PetscFunctionBegin; 18500c010503SBarry Smith PetscValidPointer(packer,2); 1851a4121054SBarry Smith ierr = DMCreate(comm,packer);CHKERRQ(ierr); 1852a4121054SBarry Smith ierr = DMSetType(*packer,DMCOMPOSITE);CHKERRQ(ierr); 185347c6ae99SBarry Smith PetscFunctionReturn(0); 185447c6ae99SBarry Smith } 1855