1 2 #include <../src/dm/impls/composite/packimpl.h> /*I "petscdmcomposite.h" I*/ 3 4 #undef __FUNCT__ 5 #define __FUNCT__ "DMCompositeSetCoupling" 6 /*@C 7 DMCompositeSetCoupling - Sets user provided routines that compute the coupling between the 8 seperate components (DMs) in a DMto build the correct matrix nonzero structure. 9 10 11 Logically Collective on MPI_Comm 12 13 Input Parameter: 14 + dm - the composite object 15 - formcouplelocations - routine to set the nonzero locations in the matrix 16 17 Level: advanced 18 19 Notes: See DMSetApplicationContext() and DMGetApplicationContext() for how to get user information into 20 this routine 21 22 @*/ 23 PetscErrorCode DMCompositeSetCoupling(DM dm,PetscErrorCode (*FormCoupleLocations)(DM,Mat,PetscInt*,PetscInt*,PetscInt,PetscInt,PetscInt,PetscInt)) 24 { 25 DM_Composite *com = (DM_Composite*)dm->data; 26 27 PetscFunctionBegin; 28 com->FormCoupleLocations = FormCoupleLocations; 29 PetscFunctionReturn(0); 30 } 31 32 #undef __FUNCT__ 33 #define __FUNCT__ "DMDestroy_Composite" 34 PetscErrorCode DMDestroy_Composite(DM dm) 35 { 36 PetscErrorCode ierr; 37 struct DMCompositeLink *next, *prev; 38 DM_Composite *com = (DM_Composite*)dm->data; 39 40 PetscFunctionBegin; 41 next = com->next; 42 while (next) { 43 prev = next; 44 next = next->next; 45 ierr = DMDestroy(&prev->dm);CHKERRQ(ierr); 46 ierr = PetscFree(prev->grstarts);CHKERRQ(ierr); 47 ierr = PetscFree(prev);CHKERRQ(ierr); 48 } 49 /* This was originally freed in DMDestroy(), but that prevents reference counting of backend objects */ 50 ierr = PetscFree(com);CHKERRQ(ierr); 51 PetscFunctionReturn(0); 52 } 53 54 #undef __FUNCT__ 55 #define __FUNCT__ "DMView_Composite" 56 PetscErrorCode DMView_Composite(DM dm,PetscViewer v) 57 { 58 PetscErrorCode ierr; 59 PetscBool iascii; 60 DM_Composite *com = (DM_Composite*)dm->data; 61 62 PetscFunctionBegin; 63 ierr = PetscObjectTypeCompare((PetscObject)v,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr); 64 if (iascii) { 65 struct DMCompositeLink *lnk = com->next; 66 PetscInt i; 67 68 ierr = PetscViewerASCIIPrintf(v,"DM (%s)\n",((PetscObject)dm)->prefix ? ((PetscObject)dm)->prefix : "no prefix");CHKERRQ(ierr); 69 ierr = PetscViewerASCIIPrintf(v," contains %D DMs\n",com->nDM);CHKERRQ(ierr); 70 ierr = PetscViewerASCIIPushTab(v);CHKERRQ(ierr); 71 for (i=0; lnk; lnk=lnk->next,i++) { 72 ierr = PetscViewerASCIIPrintf(v,"Link %D: DM of type %s\n",i,((PetscObject)lnk->dm)->type_name);CHKERRQ(ierr); 73 ierr = PetscViewerASCIIPushTab(v);CHKERRQ(ierr); 74 ierr = DMView(lnk->dm,v);CHKERRQ(ierr); 75 ierr = PetscViewerASCIIPopTab(v);CHKERRQ(ierr); 76 } 77 ierr = PetscViewerASCIIPopTab(v);CHKERRQ(ierr); 78 } 79 PetscFunctionReturn(0); 80 } 81 82 /* --------------------------------------------------------------------------------------*/ 83 #undef __FUNCT__ 84 #define __FUNCT__ "DMSetUp_Composite" 85 PetscErrorCode DMSetUp_Composite(DM dm) 86 { 87 PetscErrorCode ierr; 88 PetscInt nprev = 0; 89 PetscMPIInt rank,size; 90 DM_Composite *com = (DM_Composite*)dm->data; 91 struct DMCompositeLink *next = com->next; 92 PetscLayout map; 93 94 PetscFunctionBegin; 95 if (com->setup) SETERRQ(((PetscObject)dm)->comm,PETSC_ERR_ARG_WRONGSTATE,"Packer has already been setup"); 96 ierr = PetscLayoutCreate(((PetscObject)dm)->comm,&map);CHKERRQ(ierr); 97 ierr = PetscLayoutSetLocalSize(map,com->n);CHKERRQ(ierr); 98 ierr = PetscLayoutSetSize(map,PETSC_DETERMINE);CHKERRQ(ierr); 99 ierr = PetscLayoutSetBlockSize(map,1);CHKERRQ(ierr); 100 ierr = PetscLayoutSetUp(map);CHKERRQ(ierr); 101 ierr = PetscLayoutGetSize(map,&com->N);CHKERRQ(ierr); 102 ierr = PetscLayoutGetRange(map,&com->rstart,NULL);CHKERRQ(ierr); 103 ierr = PetscLayoutDestroy(&map);CHKERRQ(ierr); 104 105 /* now set the rstart for each linked vector */ 106 ierr = MPI_Comm_rank(((PetscObject)dm)->comm,&rank);CHKERRQ(ierr); 107 ierr = MPI_Comm_size(((PetscObject)dm)->comm,&size);CHKERRQ(ierr); 108 while (next) { 109 next->rstart = nprev; 110 nprev += next->n; 111 next->grstart = com->rstart + next->rstart; 112 ierr = PetscMalloc(size*sizeof(PetscInt),&next->grstarts);CHKERRQ(ierr); 113 ierr = MPI_Allgather(&next->grstart,1,MPIU_INT,next->grstarts,1,MPIU_INT,((PetscObject)dm)->comm);CHKERRQ(ierr); 114 next = next->next; 115 } 116 com->setup = PETSC_TRUE; 117 PetscFunctionReturn(0); 118 } 119 120 /* ----------------------------------------------------------------------------------*/ 121 122 #undef __FUNCT__ 123 #define __FUNCT__ "DMCompositeGetNumberDM" 124 /*@ 125 DMCompositeGetNumberDM - Get's the number of DM objects in the DMComposite 126 representation. 127 128 Not Collective 129 130 Input Parameter: 131 . dm - the packer object 132 133 Output Parameter: 134 . nDM - the number of DMs 135 136 Level: beginner 137 138 @*/ 139 PetscErrorCode DMCompositeGetNumberDM(DM dm,PetscInt *nDM) 140 { 141 DM_Composite *com = (DM_Composite*)dm->data; 142 143 PetscFunctionBegin; 144 PetscValidHeaderSpecific(dm,DM_CLASSID,1); 145 *nDM = com->nDM; 146 PetscFunctionReturn(0); 147 } 148 149 150 #undef __FUNCT__ 151 #define __FUNCT__ "DMCompositeGetAccess" 152 /*@C 153 DMCompositeGetAccess - Allows one to access the individual packed vectors in their global 154 representation. 155 156 Collective on DMComposite 157 158 Input Parameters: 159 + dm - the packer object 160 - gvec - the global vector 161 162 Output Parameters: 163 . Vec* ... - the packed parallel vectors, NULL for those that are not needed 164 165 Notes: Use DMCompositeRestoreAccess() to return the vectors when you no longer need them 166 167 Fortran Notes: 168 169 Fortran callers must use numbered versions of this routine, e.g., DMCompositeGetAccess4(dm,gvec,vec1,vec2,vec3,vec4) 170 or use the alternative interface DMCompositeGetAccessArray(). 171 172 Level: advanced 173 174 .seealso: DMCompositeGetEntries(), DMCompositeScatter() 175 @*/ 176 PetscErrorCode DMCompositeGetAccess(DM dm,Vec gvec,...) 177 { 178 va_list Argp; 179 PetscErrorCode ierr; 180 struct DMCompositeLink *next; 181 DM_Composite *com = (DM_Composite*)dm->data; 182 183 PetscFunctionBegin; 184 PetscValidHeaderSpecific(dm,DM_CLASSID,1); 185 PetscValidHeaderSpecific(gvec,VEC_CLASSID,2); 186 next = com->next; 187 if (!com->setup) { 188 ierr = DMSetUp(dm);CHKERRQ(ierr); 189 } 190 191 /* loop over packed objects, handling one at at time */ 192 va_start(Argp,gvec); 193 while (next) { 194 Vec *vec; 195 vec = va_arg(Argp, Vec*); 196 if (vec) { 197 PetscScalar *array; 198 ierr = DMGetGlobalVector(next->dm,vec);CHKERRQ(ierr); 199 ierr = VecGetArray(gvec,&array);CHKERRQ(ierr); 200 ierr = VecPlaceArray(*vec,array+next->rstart);CHKERRQ(ierr); 201 ierr = VecRestoreArray(gvec,&array);CHKERRQ(ierr); 202 } 203 next = next->next; 204 } 205 va_end(Argp); 206 PetscFunctionReturn(0); 207 } 208 209 #undef __FUNCT__ 210 #define __FUNCT__ "DMCompositeGetAccessArray" 211 /*@C 212 DMCompositeGetAccessArray - Allows one to access the individual packed vectors in their global 213 representation. 214 215 Collective on DMComposite 216 217 Input Parameters: 218 + dm - the packer object 219 . pvec - packed vector 220 . nwanted - number of vectors wanted 221 - wanted - sorted array of vectors wanted, or NULL to get all vectors 222 223 Output Parameters: 224 . vecs - array of requested global vectors (must be allocated) 225 226 Notes: Use DMCompositeRestoreAccessArray() to return the vectors when you no longer need them 227 228 Level: advanced 229 230 .seealso: DMCompositeGetAccess(), DMCompositeGetEntries(), DMCompositeScatter(), DMCompositeGather() 231 @*/ 232 PetscErrorCode DMCompositeGetAccessArray(DM dm,Vec pvec,PetscInt nwanted,const PetscInt *wanted,Vec *vecs) 233 { 234 PetscErrorCode ierr; 235 struct DMCompositeLink *link; 236 PetscInt i,wnum; 237 DM_Composite *com = (DM_Composite*)dm->data; 238 239 PetscFunctionBegin; 240 PetscValidHeaderSpecific(dm,DM_CLASSID,1); 241 PetscValidHeaderSpecific(pvec,VEC_CLASSID,2); 242 if (!com->setup) { 243 ierr = DMSetUp(dm);CHKERRQ(ierr); 244 } 245 246 for (i=0,wnum=0,link=com->next; link && wnum<nwanted; i++,link=link->next) { 247 if (!wanted || i == wanted[wnum]) { 248 PetscScalar *array; 249 Vec v; 250 ierr = DMGetGlobalVector(link->dm,&v);CHKERRQ(ierr); 251 ierr = VecGetArray(pvec,&array);CHKERRQ(ierr); 252 ierr = VecPlaceArray(v,array+link->rstart);CHKERRQ(ierr); 253 ierr = VecRestoreArray(pvec,&array);CHKERRQ(ierr); 254 vecs[wnum++] = v; 255 } 256 } 257 PetscFunctionReturn(0); 258 } 259 260 #undef __FUNCT__ 261 #define __FUNCT__ "DMCompositeRestoreAccess" 262 /*@C 263 DMCompositeRestoreAccess - Returns the vectors obtained with DMCompositeGetAccess() 264 representation. 265 266 Collective on DMComposite 267 268 Input Parameters: 269 + dm - the packer object 270 . gvec - the global vector 271 - Vec* ... - the individual parallel vectors, NULL for those that are not needed 272 273 Level: advanced 274 275 .seealso DMCompositeAddDM(), DMCreateGlobalVector(), 276 DMCompositeGather(), DMCompositeCreate(), DMCompositeGetISLocalToGlobalMappings(), DMCompositeScatter(), 277 DMCompositeRestoreAccess(), DMCompositeGetAccess() 278 279 @*/ 280 PetscErrorCode DMCompositeRestoreAccess(DM dm,Vec gvec,...) 281 { 282 va_list Argp; 283 PetscErrorCode ierr; 284 struct DMCompositeLink *next; 285 DM_Composite *com = (DM_Composite*)dm->data; 286 287 PetscFunctionBegin; 288 PetscValidHeaderSpecific(dm,DM_CLASSID,1); 289 PetscValidHeaderSpecific(gvec,VEC_CLASSID,2); 290 next = com->next; 291 if (!com->setup) { 292 ierr = DMSetUp(dm);CHKERRQ(ierr); 293 } 294 295 /* loop over packed objects, handling one at at time */ 296 va_start(Argp,gvec); 297 while (next) { 298 Vec *vec; 299 vec = va_arg(Argp, Vec*); 300 if (vec) { 301 ierr = VecResetArray(*vec);CHKERRQ(ierr); 302 ierr = DMRestoreGlobalVector(next->dm,vec);CHKERRQ(ierr); 303 } 304 next = next->next; 305 } 306 va_end(Argp); 307 PetscFunctionReturn(0); 308 } 309 310 #undef __FUNCT__ 311 #define __FUNCT__ "DMCompositeRestoreAccessArray" 312 /*@C 313 DMCompositeRestoreAccessArray - Returns the vectors obtained with DMCompositeGetAccessArray() 314 315 Collective on DMComposite 316 317 Input Parameters: 318 + dm - the packer object 319 . pvec - packed vector 320 . nwanted - number of vectors wanted 321 . wanted - sorted array of vectors wanted, or NULL to get all vectors 322 - vecs - array of global vectors to return 323 324 Level: advanced 325 326 .seealso: DMCompositeRestoreAccess(), DMCompositeRestoreEntries(), DMCompositeScatter(), DMCompositeGather() 327 @*/ 328 PetscErrorCode DMCompositeRestoreAccessArray(DM dm,Vec pvec,PetscInt nwanted,const PetscInt *wanted,Vec *vecs) 329 { 330 PetscErrorCode ierr; 331 struct DMCompositeLink *link; 332 PetscInt i,wnum; 333 DM_Composite *com = (DM_Composite*)dm->data; 334 335 PetscFunctionBegin; 336 PetscValidHeaderSpecific(dm,DM_CLASSID,1); 337 PetscValidHeaderSpecific(pvec,VEC_CLASSID,2); 338 if (!com->setup) { 339 ierr = DMSetUp(dm);CHKERRQ(ierr); 340 } 341 342 for (i=0,wnum=0,link=com->next; link && wnum<nwanted; i++,link=link->next) { 343 if (!wanted || i == wanted[wnum]) { 344 ierr = VecResetArray(vecs[wnum]);CHKERRQ(ierr); 345 ierr = DMRestoreGlobalVector(link->dm,&vecs[wnum]);CHKERRQ(ierr); 346 wnum++; 347 } 348 } 349 PetscFunctionReturn(0); 350 } 351 352 #undef __FUNCT__ 353 #define __FUNCT__ "DMCompositeScatter" 354 /*@C 355 DMCompositeScatter - Scatters from a global packed vector into its individual local vectors 356 357 Collective on DMComposite 358 359 Input Parameters: 360 + dm - the packer object 361 . gvec - the global vector 362 - Vec ... - the individual sequential vectors, NULL for those that are not needed 363 364 Level: advanced 365 366 .seealso DMDestroy(), DMCompositeAddDM(), DMCreateGlobalVector(), 367 DMCompositeGather(), DMCompositeCreate(), DMCompositeGetISLocalToGlobalMappings(), DMCompositeGetAccess(), 368 DMCompositeGetLocalVectors(), DMCompositeRestoreLocalVectors(), DMCompositeGetEntries() 369 370 @*/ 371 PetscErrorCode DMCompositeScatter(DM dm,Vec gvec,...) 372 { 373 va_list Argp; 374 PetscErrorCode ierr; 375 struct DMCompositeLink *next; 376 PetscInt cnt; 377 DM_Composite *com = (DM_Composite*)dm->data; 378 379 PetscFunctionBegin; 380 PetscValidHeaderSpecific(dm,DM_CLASSID,1); 381 PetscValidHeaderSpecific(gvec,VEC_CLASSID,2); 382 if (!com->setup) { 383 ierr = DMSetUp(dm);CHKERRQ(ierr); 384 } 385 386 /* loop over packed objects, handling one at at time */ 387 va_start(Argp,gvec); 388 for (cnt=3,next=com->next; next; cnt++,next=next->next) { 389 Vec local; 390 local = va_arg(Argp, Vec); 391 if (local) { 392 Vec global; 393 PetscScalar *array; 394 PetscValidHeaderSpecific(local,VEC_CLASSID,cnt); 395 ierr = DMGetGlobalVector(next->dm,&global);CHKERRQ(ierr); 396 ierr = VecGetArray(gvec,&array);CHKERRQ(ierr); 397 ierr = VecPlaceArray(global,array+next->rstart);CHKERRQ(ierr); 398 ierr = DMGlobalToLocalBegin(next->dm,global,INSERT_VALUES,local);CHKERRQ(ierr); 399 ierr = DMGlobalToLocalEnd(next->dm,global,INSERT_VALUES,local);CHKERRQ(ierr); 400 ierr = VecRestoreArray(gvec,&array);CHKERRQ(ierr); 401 ierr = VecResetArray(global);CHKERRQ(ierr); 402 ierr = DMRestoreGlobalVector(next->dm,&global);CHKERRQ(ierr); 403 } 404 } 405 va_end(Argp); 406 PetscFunctionReturn(0); 407 } 408 409 #undef __FUNCT__ 410 #define __FUNCT__ "DMCompositeGather" 411 /*@C 412 DMCompositeGather - Gathers into a global packed vector from its individual local vectors 413 414 Collective on DMComposite 415 416 Input Parameter: 417 + dm - the packer object 418 . gvec - the global vector 419 - Vec ... - the individual sequential vectors, NULL for any that are not needed 420 421 Level: advanced 422 423 .seealso DMDestroy(), DMCompositeAddDM(), DMCreateGlobalVector(), 424 DMCompositeScatter(), DMCompositeCreate(), DMCompositeGetISLocalToGlobalMappings(), DMCompositeGetAccess(), 425 DMCompositeGetLocalVectors(), DMCompositeRestoreLocalVectors(), DMCompositeGetEntries() 426 427 @*/ 428 PetscErrorCode DMCompositeGather(DM dm,Vec gvec,InsertMode imode,...) 429 { 430 va_list Argp; 431 PetscErrorCode ierr; 432 struct DMCompositeLink *next; 433 DM_Composite *com = (DM_Composite*)dm->data; 434 PetscInt cnt; 435 436 PetscFunctionBegin; 437 PetscValidHeaderSpecific(dm,DM_CLASSID,1); 438 PetscValidHeaderSpecific(gvec,VEC_CLASSID,2); 439 if (!com->setup) { 440 ierr = DMSetUp(dm);CHKERRQ(ierr); 441 } 442 443 /* loop over packed objects, handling one at at time */ 444 va_start(Argp,imode); 445 for (cnt=3,next=com->next; next; cnt++,next=next->next) { 446 Vec local; 447 local = va_arg(Argp, Vec); 448 if (local) { 449 PetscScalar *array; 450 Vec global; 451 PetscValidHeaderSpecific(local,VEC_CLASSID,cnt); 452 ierr = DMGetGlobalVector(next->dm,&global);CHKERRQ(ierr); 453 ierr = VecGetArray(gvec,&array);CHKERRQ(ierr); 454 ierr = VecPlaceArray(global,array+next->rstart);CHKERRQ(ierr); 455 ierr = DMLocalToGlobalBegin(next->dm,local,imode,global);CHKERRQ(ierr); 456 ierr = DMLocalToGlobalEnd(next->dm,local,imode,global);CHKERRQ(ierr); 457 ierr = VecRestoreArray(gvec,&array);CHKERRQ(ierr); 458 ierr = VecResetArray(global);CHKERRQ(ierr); 459 ierr = DMRestoreGlobalVector(next->dm,&global);CHKERRQ(ierr); 460 } 461 } 462 va_end(Argp); 463 PetscFunctionReturn(0); 464 } 465 466 #undef __FUNCT__ 467 #define __FUNCT__ "DMCompositeAddDM" 468 /*@C 469 DMCompositeAddDM - adds a DM vector to a DMComposite 470 471 Collective on DMComposite 472 473 Input Parameter: 474 + dm - the packer object 475 - dm - the DM object, if the DM is a da you will need to caste it with a (DM) 476 477 Level: advanced 478 479 .seealso DMDestroy(), DMCompositeGather(), DMCompositeAddDM(), DMCreateGlobalVector(), 480 DMCompositeScatter(), DMCompositeCreate(), DMCompositeGetISLocalToGlobalMappings(), DMCompositeGetAccess(), 481 DMCompositeGetLocalVectors(), DMCompositeRestoreLocalVectors(), DMCompositeGetEntries() 482 483 @*/ 484 PetscErrorCode DMCompositeAddDM(DM dmc,DM dm) 485 { 486 PetscErrorCode ierr; 487 PetscInt n,nlocal; 488 struct DMCompositeLink *mine,*next; 489 Vec global,local; 490 DM_Composite *com = (DM_Composite*)dmc->data; 491 492 PetscFunctionBegin; 493 PetscValidHeaderSpecific(dmc,DM_CLASSID,1); 494 PetscValidHeaderSpecific(dm,DM_CLASSID,2); 495 next = com->next; 496 if (com->setup) SETERRQ(((PetscObject)dmc)->comm,PETSC_ERR_ARG_WRONGSTATE,"Cannot add a DM once you have used the DMComposite"); 497 498 /* create new link */ 499 ierr = PetscNew(struct DMCompositeLink,&mine);CHKERRQ(ierr); 500 ierr = PetscObjectReference((PetscObject)dm);CHKERRQ(ierr); 501 ierr = DMGetGlobalVector(dm,&global);CHKERRQ(ierr); 502 ierr = VecGetLocalSize(global,&n);CHKERRQ(ierr); 503 ierr = DMRestoreGlobalVector(dm,&global);CHKERRQ(ierr); 504 ierr = DMGetLocalVector(dm,&local);CHKERRQ(ierr); 505 ierr = VecGetSize(local,&nlocal);CHKERRQ(ierr); 506 ierr = DMRestoreLocalVector(dm,&local);CHKERRQ(ierr); 507 508 mine->n = n; 509 mine->nlocal = nlocal; 510 mine->dm = dm; 511 mine->next = NULL; 512 com->n += n; 513 514 /* add to end of list */ 515 if (!next) com->next = mine; 516 else { 517 while (next->next) next = next->next; 518 next->next = mine; 519 } 520 com->nDM++; 521 com->nmine++; 522 PetscFunctionReturn(0); 523 } 524 525 extern PetscErrorCode VecView_MPI(Vec,PetscViewer); 526 EXTERN_C_BEGIN 527 #undef __FUNCT__ 528 #define __FUNCT__ "VecView_DMComposite" 529 PetscErrorCode VecView_DMComposite(Vec gvec,PetscViewer viewer) 530 { 531 DM dm; 532 PetscErrorCode ierr; 533 struct DMCompositeLink *next; 534 PetscBool isdraw; 535 DM_Composite *com; 536 537 PetscFunctionBegin; 538 ierr = VecGetDM(gvec, &dm);CHKERRQ(ierr); 539 if (!dm) SETERRQ(((PetscObject)gvec)->comm,PETSC_ERR_ARG_WRONG,"Vector not generated from a DMComposite"); 540 com = (DM_Composite*)dm->data; 541 next = com->next; 542 543 ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr); 544 if (!isdraw) { 545 /* do I really want to call this? */ 546 ierr = VecView_MPI(gvec,viewer);CHKERRQ(ierr); 547 } else { 548 PetscInt cnt = 0; 549 550 /* loop over packed objects, handling one at at time */ 551 while (next) { 552 Vec vec; 553 PetscScalar *array; 554 PetscInt bs; 555 556 /* Should use VecGetSubVector() eventually, but would need to forward the DM for that to work */ 557 ierr = DMGetGlobalVector(next->dm,&vec);CHKERRQ(ierr); 558 ierr = VecGetArray(gvec,&array);CHKERRQ(ierr); 559 ierr = VecPlaceArray(vec,array+next->rstart);CHKERRQ(ierr); 560 ierr = VecRestoreArray(gvec,&array);CHKERRQ(ierr); 561 ierr = VecView(vec,viewer);CHKERRQ(ierr); 562 ierr = VecGetBlockSize(vec,&bs);CHKERRQ(ierr); 563 ierr = VecResetArray(vec);CHKERRQ(ierr); 564 ierr = DMRestoreGlobalVector(next->dm,&vec);CHKERRQ(ierr); 565 ierr = PetscViewerDrawBaseAdd(viewer,bs);CHKERRQ(ierr); 566 cnt += bs; 567 next = next->next; 568 } 569 ierr = PetscViewerDrawBaseAdd(viewer,-cnt);CHKERRQ(ierr); 570 } 571 PetscFunctionReturn(0); 572 } 573 EXTERN_C_END 574 575 576 #undef __FUNCT__ 577 #define __FUNCT__ "DMCreateGlobalVector_Composite" 578 PetscErrorCode DMCreateGlobalVector_Composite(DM dm,Vec *gvec) 579 { 580 PetscErrorCode ierr; 581 DM_Composite *com = (DM_Composite*)dm->data; 582 583 PetscFunctionBegin; 584 PetscValidHeaderSpecific(dm,DM_CLASSID,1); 585 ierr = DMSetUp(dm);CHKERRQ(ierr); 586 ierr = VecCreateMPI(((PetscObject)dm)->comm,com->n,com->N,gvec);CHKERRQ(ierr); 587 ierr = VecSetDM(*gvec, dm);CHKERRQ(ierr); 588 ierr = VecSetOperation(*gvec,VECOP_VIEW,(void (*)(void))VecView_DMComposite);CHKERRQ(ierr); 589 PetscFunctionReturn(0); 590 } 591 592 #undef __FUNCT__ 593 #define __FUNCT__ "DMCreateLocalVector_Composite" 594 PetscErrorCode DMCreateLocalVector_Composite(DM dm,Vec *lvec) 595 { 596 PetscErrorCode ierr; 597 DM_Composite *com = (DM_Composite*)dm->data; 598 599 PetscFunctionBegin; 600 PetscValidHeaderSpecific(dm,DM_CLASSID,1); 601 if (!com->setup) { 602 ierr = DMSetUp(dm);CHKERRQ(ierr); 603 } 604 ierr = VecCreateSeq(((PetscObject)dm)->comm,com->nghost,lvec);CHKERRQ(ierr); 605 ierr = VecSetDM(*lvec, dm);CHKERRQ(ierr); 606 PetscFunctionReturn(0); 607 } 608 609 #undef __FUNCT__ 610 #define __FUNCT__ "DMCompositeGetISLocalToGlobalMappings" 611 /*@C 612 DMCompositeGetISLocalToGlobalMappings - gets an ISLocalToGlobalMapping for each DM in the DMComposite, maps to the composite global space 613 614 Collective on DM 615 616 Input Parameter: 617 . dm - the packer object 618 619 Output Parameters: 620 . ltogs - the individual mappings for each packed vector. Note that this includes 621 all the ghost points that individual ghosted DMDA's may have. 622 623 Level: advanced 624 625 Notes: 626 Each entry of ltogs should be destroyed with ISLocalToGlobalMappingDestroy(), the ltogs array should be freed with PetscFree(). 627 628 .seealso DMDestroy(), DMCompositeAddDM(), DMCreateGlobalVector(), 629 DMCompositeGather(), DMCompositeCreate(), DMCompositeGetAccess(), DMCompositeScatter(), 630 DMCompositeGetLocalVectors(), DMCompositeRestoreLocalVectors(),DMCompositeGetEntries() 631 632 @*/ 633 PetscErrorCode DMCompositeGetISLocalToGlobalMappings(DM dm,ISLocalToGlobalMapping **ltogs) 634 { 635 PetscErrorCode ierr; 636 PetscInt i,*idx,n,cnt; 637 struct DMCompositeLink *next; 638 PetscMPIInt rank; 639 DM_Composite *com = (DM_Composite*)dm->data; 640 641 PetscFunctionBegin; 642 PetscValidHeaderSpecific(dm,DM_CLASSID,1); 643 ierr = DMSetUp(dm);CHKERRQ(ierr); 644 ierr = PetscMalloc((com->nDM)*sizeof(ISLocalToGlobalMapping),ltogs);CHKERRQ(ierr); 645 next = com->next; 646 ierr = MPI_Comm_rank(((PetscObject)dm)->comm,&rank);CHKERRQ(ierr); 647 648 /* loop over packed objects, handling one at at time */ 649 cnt = 0; 650 while (next) { 651 ISLocalToGlobalMapping ltog; 652 PetscMPIInt size; 653 const PetscInt *suboff,*indices; 654 Vec global; 655 656 /* Get sub-DM global indices for each local dof */ 657 ierr = DMGetLocalToGlobalMapping(next->dm,<og);CHKERRQ(ierr); 658 ierr = ISLocalToGlobalMappingGetSize(ltog,&n);CHKERRQ(ierr); 659 ierr = ISLocalToGlobalMappingGetIndices(ltog,&indices);CHKERRQ(ierr); 660 ierr = PetscMalloc(n*sizeof(PetscInt),&idx);CHKERRQ(ierr); 661 662 /* Get the offsets for the sub-DM global vector */ 663 ierr = DMGetGlobalVector(next->dm,&global);CHKERRQ(ierr); 664 ierr = VecGetOwnershipRanges(global,&suboff);CHKERRQ(ierr); 665 ierr = MPI_Comm_size(((PetscObject)global)->comm,&size);CHKERRQ(ierr); 666 667 /* Shift the sub-DM definition of the global space to the composite global space */ 668 for (i=0; i<n; i++) { 669 PetscInt subi = indices[i],lo = 0,hi = size,t; 670 /* Binary search to find which rank owns subi */ 671 while (hi-lo > 1) { 672 t = lo + (hi-lo)/2; 673 if (suboff[t] > subi) hi = t; 674 else lo = t; 675 } 676 idx[i] = subi - suboff[lo] + next->grstarts[lo]; 677 } 678 ierr = ISLocalToGlobalMappingRestoreIndices(ltog,&indices);CHKERRQ(ierr); 679 ierr = ISLocalToGlobalMappingCreate(((PetscObject)dm)->comm,n,idx,PETSC_OWN_POINTER,&(*ltogs)[cnt]);CHKERRQ(ierr); 680 ierr = DMRestoreGlobalVector(next->dm,&global);CHKERRQ(ierr); 681 next = next->next; 682 cnt++; 683 } 684 PetscFunctionReturn(0); 685 } 686 687 #undef __FUNCT__ 688 #define __FUNCT__ "DMCompositeGetLocalISs" 689 /*@C 690 DMCompositeGetLocalISs - Gets index sets for each component of a composite local vector 691 692 Not Collective 693 694 Input Arguments: 695 . dm - composite DM 696 697 Output Arguments: 698 . is - array of serial index sets for each each component of the DMComposite 699 700 Level: intermediate 701 702 Notes: 703 At present, a composite local vector does not normally exist. This function is used to provide index sets for 704 MatGetLocalSubMatrix(). In the future, the scatters for each entry in the DMComposite may be be merged into a single 705 scatter to a composite local vector. The user should not typically need to know which is being done. 706 707 To get the composite global indices at all local points (including ghosts), use DMCompositeGetISLocalToGlobalMappings(). 708 709 To get index sets for pieces of the composite global vector, use DMCompositeGetGlobalISs(). 710 711 Each returned IS should be destroyed with ISDestroy(), the array should be freed with PetscFree(). 712 713 .seealso: DMCompositeGetGlobalISs(), DMCompositeGetISLocalToGlobalMappings(), MatGetLocalSubMatrix(), MatCreateLocalRef() 714 @*/ 715 PetscErrorCode DMCompositeGetLocalISs(DM dm,IS **is) 716 { 717 PetscErrorCode ierr; 718 DM_Composite *com = (DM_Composite*)dm->data; 719 struct DMCompositeLink *link; 720 PetscInt cnt,start; 721 722 PetscFunctionBegin; 723 PetscValidHeaderSpecific(dm,DM_CLASSID,1); 724 PetscValidPointer(is,2); 725 ierr = PetscMalloc(com->nmine*sizeof(IS),is);CHKERRQ(ierr); 726 for (cnt=0,start=0,link=com->next; link; start+=link->nlocal,cnt++,link=link->next) { 727 PetscInt bs; 728 ierr = ISCreateStride(PETSC_COMM_SELF,link->nlocal,start,1,&(*is)[cnt]);CHKERRQ(ierr); 729 ierr = DMGetBlockSize(link->dm,&bs);CHKERRQ(ierr); 730 ierr = ISSetBlockSize((*is)[cnt],bs);CHKERRQ(ierr); 731 } 732 PetscFunctionReturn(0); 733 } 734 735 #undef __FUNCT__ 736 #define __FUNCT__ "DMCompositeGetGlobalISs" 737 /*@C 738 DMCompositeGetGlobalISs - Gets the index sets for each composed object 739 740 Collective on DMComposite 741 742 Input Parameter: 743 . dm - the packer object 744 745 Output Parameters: 746 . is - the array of index sets 747 748 Level: advanced 749 750 Notes: 751 The is entries should be destroyed with ISDestroy(), the is array should be freed with PetscFree() 752 753 These could be used to extract a subset of vector entries for a "multi-physics" preconditioner 754 755 Use DMCompositeGetLocalISs() for index sets in the packed local numbering, and 756 DMCompositeGetISLocalToGlobalMappings() for to map local sub-DM (including ghost) indices to packed global 757 indices. 758 759 .seealso DMDestroy(), DMCompositeAddDM(), DMCreateGlobalVector(), 760 DMCompositeGather(), DMCompositeCreate(), DMCompositeGetAccess(), DMCompositeScatter(), 761 DMCompositeGetLocalVectors(), DMCompositeRestoreLocalVectors(),DMCompositeGetEntries() 762 763 @*/ 764 765 PetscErrorCode DMCompositeGetGlobalISs(DM dm,IS *is[]) 766 { 767 PetscErrorCode ierr; 768 PetscInt cnt = 0,*idx,i; 769 struct DMCompositeLink *next; 770 PetscMPIInt rank; 771 DM_Composite *com = (DM_Composite*)dm->data; 772 773 PetscFunctionBegin; 774 PetscValidHeaderSpecific(dm,DM_CLASSID,1); 775 ierr = PetscMalloc((com->nDM)*sizeof(IS),is);CHKERRQ(ierr); 776 next = com->next; 777 ierr = MPI_Comm_rank(((PetscObject)dm)->comm,&rank);CHKERRQ(ierr); 778 779 /* loop over packed objects, handling one at at time */ 780 while (next) { 781 ierr = PetscMalloc(next->n*sizeof(PetscInt),&idx);CHKERRQ(ierr); 782 for (i=0; i<next->n; i++) idx[i] = next->grstart + i; 783 ierr = ISCreateGeneral(((PetscObject)dm)->comm,next->n,idx,PETSC_OWN_POINTER,&(*is)[cnt]);CHKERRQ(ierr); 784 cnt++; 785 next = next->next; 786 } 787 PetscFunctionReturn(0); 788 } 789 790 #undef __FUNCT__ 791 #define __FUNCT__ "DMCreateFieldIS_Composite" 792 PetscErrorCode DMCreateFieldIS_Composite(DM dm, PetscInt *numFields,char ***fieldNames, IS **fields) 793 { 794 PetscInt nDM; 795 DM *dms; 796 PetscInt i; 797 PetscErrorCode ierr; 798 799 PetscFunctionBegin; 800 ierr = DMCompositeGetNumberDM(dm, &nDM);CHKERRQ(ierr); 801 if (numFields) *numFields = nDM; 802 ierr = DMCompositeGetGlobalISs(dm, fields);CHKERRQ(ierr); 803 if (fieldNames) { 804 ierr = PetscMalloc(nDM*sizeof(DM), &dms);CHKERRQ(ierr); 805 ierr = PetscMalloc(nDM*sizeof(const char*), fieldNames);CHKERRQ(ierr); 806 ierr = DMCompositeGetEntriesArray(dm, dms);CHKERRQ(ierr); 807 for (i=0; i<nDM; i++) { 808 char buf[256]; 809 const char *splitname; 810 811 /* Split naming precedence: object name, prefix, number */ 812 splitname = ((PetscObject) dm)->name; 813 if (!splitname) { 814 ierr = PetscObjectGetOptionsPrefix((PetscObject)dms[i],&splitname);CHKERRQ(ierr); 815 if (splitname) { 816 size_t len; 817 ierr = PetscStrncpy(buf,splitname,sizeof(buf));CHKERRQ(ierr); 818 buf[sizeof(buf) - 1] = 0; 819 ierr = PetscStrlen(buf,&len);CHKERRQ(ierr); 820 if (buf[len-1] == '_') buf[len-1] = 0; /* Remove trailing underscore if it was used */ 821 splitname = buf; 822 } 823 } 824 if (!splitname) { 825 ierr = PetscSNPrintf(buf,sizeof(buf),"%D",i);CHKERRQ(ierr); 826 splitname = buf; 827 } 828 ierr = PetscStrallocpy(splitname,&(*fieldNames)[i]);CHKERRQ(ierr); 829 } 830 ierr = PetscFree(dms);CHKERRQ(ierr); 831 } 832 PetscFunctionReturn(0); 833 } 834 835 /* 836 This could take over from DMCreateFieldIS(), as it is more general, 837 making DMCreateFieldIS() a special case -- calling with dmlist == NULL; 838 At this point it's probably best to be less intrusive, however. 839 */ 840 #undef __FUNCT__ 841 #define __FUNCT__ "DMCreateFieldDecomposition_Composite" 842 PetscErrorCode DMCreateFieldDecomposition_Composite(DM dm, PetscInt *len,char ***namelist, IS **islist, DM **dmlist) 843 { 844 PetscInt nDM; 845 PetscInt i; 846 PetscErrorCode ierr; 847 848 PetscFunctionBegin; 849 ierr = DMCreateFieldIS_Composite(dm, len, namelist, islist);CHKERRQ(ierr); 850 if (dmlist) { 851 ierr = DMCompositeGetNumberDM(dm, &nDM);CHKERRQ(ierr); 852 ierr = PetscMalloc(nDM*sizeof(DM), dmlist);CHKERRQ(ierr); 853 ierr = DMCompositeGetEntriesArray(dm, *dmlist);CHKERRQ(ierr); 854 for (i=0; i<nDM; i++) { 855 ierr = PetscObjectReference((PetscObject)((*dmlist)[i]));CHKERRQ(ierr); 856 } 857 } 858 PetscFunctionReturn(0); 859 } 860 861 862 863 /* -------------------------------------------------------------------------------------*/ 864 #undef __FUNCT__ 865 #define __FUNCT__ "DMCompositeGetLocalVectors" 866 /*@C 867 DMCompositeGetLocalVectors - Gets local vectors for each part of a DMComposite. 868 Use DMCompositeRestoreLocalVectors() to return them. 869 870 Not Collective 871 872 Input Parameter: 873 . dm - the packer object 874 875 Output Parameter: 876 . Vec ... - the individual sequential Vecs 877 878 Level: advanced 879 880 .seealso DMDestroy(), DMCompositeAddDM(), DMCreateGlobalVector(), 881 DMCompositeGather(), DMCompositeCreate(), DMCompositeGetISLocalToGlobalMappings(), DMCompositeGetAccess(), 882 DMCompositeRestoreLocalVectors(), DMCompositeScatter(), DMCompositeGetEntries() 883 884 @*/ 885 PetscErrorCode DMCompositeGetLocalVectors(DM dm,...) 886 { 887 va_list Argp; 888 PetscErrorCode ierr; 889 struct DMCompositeLink *next; 890 DM_Composite *com = (DM_Composite*)dm->data; 891 892 PetscFunctionBegin; 893 PetscValidHeaderSpecific(dm,DM_CLASSID,1); 894 next = com->next; 895 /* loop over packed objects, handling one at at time */ 896 va_start(Argp,dm); 897 while (next) { 898 Vec *vec; 899 vec = va_arg(Argp, Vec*); 900 if (vec) {ierr = DMGetLocalVector(next->dm,vec);CHKERRQ(ierr);} 901 next = next->next; 902 } 903 va_end(Argp); 904 PetscFunctionReturn(0); 905 } 906 907 #undef __FUNCT__ 908 #define __FUNCT__ "DMCompositeRestoreLocalVectors" 909 /*@C 910 DMCompositeRestoreLocalVectors - Restores local vectors for each part of a DMComposite. 911 912 Not Collective 913 914 Input Parameter: 915 . dm - the packer object 916 917 Output Parameter: 918 . Vec ... - the individual sequential Vecs 919 920 Level: advanced 921 922 .seealso DMDestroy(), DMCompositeAddDM(), DMCreateGlobalVector(), 923 DMCompositeGather(), DMCompositeCreate(), DMCompositeGetISLocalToGlobalMappings(), DMCompositeGetAccess(), 924 DMCompositeGetLocalVectors(), DMCompositeScatter(), DMCompositeGetEntries() 925 926 @*/ 927 PetscErrorCode DMCompositeRestoreLocalVectors(DM dm,...) 928 { 929 va_list Argp; 930 PetscErrorCode ierr; 931 struct DMCompositeLink *next; 932 DM_Composite *com = (DM_Composite*)dm->data; 933 934 PetscFunctionBegin; 935 PetscValidHeaderSpecific(dm,DM_CLASSID,1); 936 next = com->next; 937 /* loop over packed objects, handling one at at time */ 938 va_start(Argp,dm); 939 while (next) { 940 Vec *vec; 941 vec = va_arg(Argp, Vec*); 942 if (vec) {ierr = DMRestoreLocalVector(next->dm,vec);CHKERRQ(ierr);} 943 next = next->next; 944 } 945 va_end(Argp); 946 PetscFunctionReturn(0); 947 } 948 949 /* -------------------------------------------------------------------------------------*/ 950 #undef __FUNCT__ 951 #define __FUNCT__ "DMCompositeGetEntries" 952 /*@C 953 DMCompositeGetEntries - Gets the DM for each entry in a DMComposite. 954 955 Not Collective 956 957 Input Parameter: 958 . dm - the packer object 959 960 Output Parameter: 961 . DM ... - the individual entries (DMs) 962 963 Level: advanced 964 965 .seealso DMDestroy(), DMCompositeAddDM(), DMCreateGlobalVector(), DMCompositeGetEntriesArray() 966 DMCompositeGather(), DMCompositeCreate(), DMCompositeGetISLocalToGlobalMappings(), DMCompositeGetAccess(), 967 DMCompositeRestoreLocalVectors(), DMCompositeGetLocalVectors(), DMCompositeScatter(), 968 DMCompositeGetLocalVectors(), DMCompositeRestoreLocalVectors() 969 970 @*/ 971 PetscErrorCode DMCompositeGetEntries(DM dm,...) 972 { 973 va_list Argp; 974 struct DMCompositeLink *next; 975 DM_Composite *com = (DM_Composite*)dm->data; 976 977 PetscFunctionBegin; 978 PetscValidHeaderSpecific(dm,DM_CLASSID,1); 979 next = com->next; 980 /* loop over packed objects, handling one at at time */ 981 va_start(Argp,dm); 982 while (next) { 983 DM *dmn; 984 dmn = va_arg(Argp, DM*); 985 if (dmn) *dmn = next->dm; 986 next = next->next; 987 } 988 va_end(Argp); 989 PetscFunctionReturn(0); 990 } 991 992 #undef __FUNCT__ 993 #define __FUNCT__ "DMCompositeGetEntriesArray" 994 /*@C 995 DMCompositeGetEntriesArray - Gets the DM for each entry in a DMComposite. 996 997 Not Collective 998 999 Input Parameter: 1000 + dm - the packer object 1001 - dms - array of sufficient length (see DMCompositeGetNumberDM()), holds the DMs on output 1002 1003 Level: advanced 1004 1005 .seealso DMDestroy(), DMCompositeAddDM(), DMCreateGlobalVector(), DMCompositeGetEntries() 1006 DMCompositeGather(), DMCompositeCreate(), DMCompositeGetISLocalToGlobalMappings(), DMCompositeGetAccess(), 1007 DMCompositeRestoreLocalVectors(), DMCompositeGetLocalVectors(), DMCompositeScatter(), 1008 DMCompositeGetLocalVectors(), DMCompositeRestoreLocalVectors() 1009 1010 @*/ 1011 PetscErrorCode DMCompositeGetEntriesArray(DM dm,DM dms[]) 1012 { 1013 struct DMCompositeLink *next; 1014 DM_Composite *com = (DM_Composite*)dm->data; 1015 PetscInt i; 1016 1017 PetscFunctionBegin; 1018 PetscValidHeaderSpecific(dm,DM_CLASSID,1); 1019 /* loop over packed objects, handling one at at time */ 1020 for (next=com->next,i=0; next; next=next->next,i++) dms[i] = next->dm; 1021 PetscFunctionReturn(0); 1022 } 1023 1024 #undef __FUNCT__ 1025 #define __FUNCT__ "DMRefine_Composite" 1026 PetscErrorCode DMRefine_Composite(DM dmi,MPI_Comm comm,DM *fine) 1027 { 1028 PetscErrorCode ierr; 1029 struct DMCompositeLink *next; 1030 DM_Composite *com = (DM_Composite*)dmi->data; 1031 DM dm; 1032 1033 PetscFunctionBegin; 1034 PetscValidHeaderSpecific(dmi,DM_CLASSID,1); 1035 if (comm == MPI_COMM_NULL) comm = ((PetscObject)dmi)->comm; 1036 ierr = DMSetUp(dmi);CHKERRQ(ierr); 1037 next = com->next; 1038 ierr = DMCompositeCreate(comm,fine);CHKERRQ(ierr); 1039 1040 /* loop over packed objects, handling one at at time */ 1041 while (next) { 1042 ierr = DMRefine(next->dm,comm,&dm);CHKERRQ(ierr); 1043 ierr = DMCompositeAddDM(*fine,dm);CHKERRQ(ierr); 1044 ierr = PetscObjectDereference((PetscObject)dm);CHKERRQ(ierr); 1045 next = next->next; 1046 } 1047 PetscFunctionReturn(0); 1048 } 1049 1050 #undef __FUNCT__ 1051 #define __FUNCT__ "DMCoarsen_Composite" 1052 PetscErrorCode DMCoarsen_Composite(DM dmi,MPI_Comm comm,DM *fine) 1053 { 1054 PetscErrorCode ierr; 1055 struct DMCompositeLink *next; 1056 DM_Composite *com = (DM_Composite*)dmi->data; 1057 DM dm; 1058 1059 PetscFunctionBegin; 1060 PetscValidHeaderSpecific(dmi,DM_CLASSID,1); 1061 ierr = DMSetUp(dmi);CHKERRQ(ierr); 1062 if (comm == MPI_COMM_NULL) { 1063 ierr = PetscObjectGetComm((PetscObject)dmi,&comm);CHKERRQ(ierr); 1064 } 1065 next = com->next; 1066 ierr = DMCompositeCreate(comm,fine);CHKERRQ(ierr); 1067 1068 /* loop over packed objects, handling one at at time */ 1069 while (next) { 1070 ierr = DMCoarsen(next->dm,comm,&dm);CHKERRQ(ierr); 1071 ierr = DMCompositeAddDM(*fine,dm);CHKERRQ(ierr); 1072 ierr = PetscObjectDereference((PetscObject)dm);CHKERRQ(ierr); 1073 next = next->next; 1074 } 1075 PetscFunctionReturn(0); 1076 } 1077 1078 #undef __FUNCT__ 1079 #define __FUNCT__ "DMCreateInterpolation_Composite" 1080 PetscErrorCode DMCreateInterpolation_Composite(DM coarse,DM fine,Mat *A,Vec *v) 1081 { 1082 PetscErrorCode ierr; 1083 PetscInt m,n,M,N,nDM,i; 1084 struct DMCompositeLink *nextc; 1085 struct DMCompositeLink *nextf; 1086 Vec gcoarse,gfine,*vecs; 1087 DM_Composite *comcoarse = (DM_Composite*)coarse->data; 1088 DM_Composite *comfine = (DM_Composite*)fine->data; 1089 Mat *mats; 1090 1091 PetscFunctionBegin; 1092 PetscValidHeaderSpecific(coarse,DM_CLASSID,1); 1093 PetscValidHeaderSpecific(fine,DM_CLASSID,2); 1094 ierr = DMSetUp(coarse);CHKERRQ(ierr); 1095 ierr = DMSetUp(fine);CHKERRQ(ierr); 1096 /* use global vectors only for determining matrix layout */ 1097 ierr = DMGetGlobalVector(coarse,&gcoarse);CHKERRQ(ierr); 1098 ierr = DMGetGlobalVector(fine,&gfine);CHKERRQ(ierr); 1099 ierr = VecGetLocalSize(gcoarse,&n);CHKERRQ(ierr); 1100 ierr = VecGetLocalSize(gfine,&m);CHKERRQ(ierr); 1101 ierr = VecGetSize(gcoarse,&N);CHKERRQ(ierr); 1102 ierr = VecGetSize(gfine,&M);CHKERRQ(ierr); 1103 ierr = DMRestoreGlobalVector(coarse,&gcoarse);CHKERRQ(ierr); 1104 ierr = DMRestoreGlobalVector(fine,&gfine);CHKERRQ(ierr); 1105 1106 nDM = comfine->nDM; 1107 if (nDM != comcoarse->nDM) SETERRQ2(((PetscObject)fine)->comm,PETSC_ERR_ARG_INCOMP,"Fine DMComposite has %D entries, but coarse has %D",nDM,comcoarse->nDM); 1108 ierr = PetscMalloc(nDM*nDM*sizeof(Mat),&mats);CHKERRQ(ierr); 1109 ierr = PetscMemzero(mats,nDM*nDM*sizeof(Mat));CHKERRQ(ierr); 1110 if (v) { 1111 ierr = PetscMalloc(nDM*sizeof(Vec),&vecs);CHKERRQ(ierr); 1112 ierr = PetscMemzero(vecs,nDM*sizeof(Vec));CHKERRQ(ierr); 1113 } 1114 1115 /* loop over packed objects, handling one at at time */ 1116 for (nextc=comcoarse->next,nextf=comfine->next,i=0; nextc; nextc=nextc->next,nextf=nextf->next,i++) { 1117 if (!v) { 1118 ierr = DMCreateInterpolation(nextc->dm,nextf->dm,&mats[i*nDM+i],NULL);CHKERRQ(ierr); 1119 } else { 1120 ierr = DMCreateInterpolation(nextc->dm,nextf->dm,&mats[i*nDM+i],&vecs[i]);CHKERRQ(ierr); 1121 } 1122 } 1123 ierr = MatCreateNest(((PetscObject)fine)->comm,nDM,NULL,nDM,NULL,mats,A);CHKERRQ(ierr); 1124 if (v) { 1125 ierr = VecCreateNest(((PetscObject)fine)->comm,nDM,NULL,vecs,v);CHKERRQ(ierr); 1126 } 1127 for (i=0; i<nDM*nDM; i++) {ierr = MatDestroy(&mats[i]);CHKERRQ(ierr);} 1128 ierr = PetscFree(mats);CHKERRQ(ierr); 1129 if (v) { 1130 for (i=0; i<nDM; i++) {ierr = VecDestroy(&vecs[i]);CHKERRQ(ierr);} 1131 ierr = PetscFree(vecs);CHKERRQ(ierr); 1132 } 1133 PetscFunctionReturn(0); 1134 } 1135 1136 #undef __FUNCT__ 1137 #define __FUNCT__ "DMCreateLocalToGlobalMapping_Composite" 1138 static PetscErrorCode DMCreateLocalToGlobalMapping_Composite(DM dm) 1139 { 1140 DM_Composite *com = (DM_Composite*)dm->data; 1141 ISLocalToGlobalMapping *ltogs; 1142 PetscInt i; 1143 PetscErrorCode ierr; 1144 1145 PetscFunctionBegin; 1146 /* Set the ISLocalToGlobalMapping on the new matrix */ 1147 ierr = DMCompositeGetISLocalToGlobalMappings(dm,<ogs);CHKERRQ(ierr); 1148 ierr = ISLocalToGlobalMappingConcatenate(((PetscObject)dm)->comm,com->nDM,ltogs,&dm->ltogmap);CHKERRQ(ierr); 1149 for (i=0; i<com->nDM; i++) {ierr = ISLocalToGlobalMappingDestroy(<ogs[i]);CHKERRQ(ierr);} 1150 ierr = PetscFree(ltogs);CHKERRQ(ierr); 1151 PetscFunctionReturn(0); 1152 } 1153 1154 1155 #undef __FUNCT__ 1156 #define __FUNCT__ "DMCreateColoring_Composite" 1157 PetscErrorCode DMCreateColoring_Composite(DM dm,ISColoringType ctype,MatType mtype,ISColoring *coloring) 1158 { 1159 PetscErrorCode ierr; 1160 PetscInt n,i,cnt; 1161 ISColoringValue *colors; 1162 PetscBool dense = PETSC_FALSE; 1163 ISColoringValue maxcol = 0; 1164 DM_Composite *com = (DM_Composite*)dm->data; 1165 1166 PetscFunctionBegin; 1167 PetscValidHeaderSpecific(dm,DM_CLASSID,1); 1168 if (ctype == IS_COLORING_GHOSTED) SETERRQ(((PetscObject)dm)->comm,PETSC_ERR_SUP,"Only global coloring supported"); 1169 else if (ctype == IS_COLORING_GLOBAL) { 1170 n = com->n; 1171 } else SETERRQ(((PetscObject)dm)->comm,PETSC_ERR_ARG_OUTOFRANGE,"Unknown ISColoringType"); 1172 ierr = PetscMalloc(n*sizeof(ISColoringValue),&colors);CHKERRQ(ierr); /* freed in ISColoringDestroy() */ 1173 1174 ierr = PetscOptionsGetBool(NULL,"-dmcomposite_dense_jacobian",&dense,NULL);CHKERRQ(ierr); 1175 if (dense) { 1176 for (i=0; i<n; i++) { 1177 colors[i] = (ISColoringValue)(com->rstart + i); 1178 } 1179 maxcol = com->N; 1180 } else { 1181 struct DMCompositeLink *next = com->next; 1182 PetscMPIInt rank; 1183 1184 ierr = MPI_Comm_rank(((PetscObject)dm)->comm,&rank);CHKERRQ(ierr); 1185 cnt = 0; 1186 while (next) { 1187 ISColoring lcoloring; 1188 1189 ierr = DMCreateColoring(next->dm,IS_COLORING_GLOBAL,mtype,&lcoloring);CHKERRQ(ierr); 1190 for (i=0; i<lcoloring->N; i++) { 1191 colors[cnt++] = maxcol + lcoloring->colors[i]; 1192 } 1193 maxcol += lcoloring->n; 1194 ierr = ISColoringDestroy(&lcoloring);CHKERRQ(ierr); 1195 next = next->next; 1196 } 1197 } 1198 ierr = ISColoringCreate(((PetscObject)dm)->comm,maxcol,n,colors,coloring);CHKERRQ(ierr); 1199 PetscFunctionReturn(0); 1200 } 1201 1202 #undef __FUNCT__ 1203 #define __FUNCT__ "DMGlobalToLocalBegin_Composite" 1204 PetscErrorCode DMGlobalToLocalBegin_Composite(DM dm,Vec gvec,InsertMode mode,Vec lvec) 1205 { 1206 PetscErrorCode ierr; 1207 struct DMCompositeLink *next; 1208 PetscInt cnt = 3; 1209 PetscMPIInt rank; 1210 PetscScalar *garray,*larray; 1211 DM_Composite *com = (DM_Composite*)dm->data; 1212 1213 PetscFunctionBegin; 1214 PetscValidHeaderSpecific(dm,DM_CLASSID,1); 1215 PetscValidHeaderSpecific(gvec,VEC_CLASSID,2); 1216 next = com->next; 1217 if (!com->setup) { 1218 ierr = DMSetUp(dm);CHKERRQ(ierr); 1219 } 1220 ierr = MPI_Comm_rank(((PetscObject)dm)->comm,&rank);CHKERRQ(ierr); 1221 ierr = VecGetArray(gvec,&garray);CHKERRQ(ierr); 1222 ierr = VecGetArray(lvec,&larray);CHKERRQ(ierr); 1223 1224 /* loop over packed objects, handling one at at time */ 1225 while (next) { 1226 Vec local,global; 1227 PetscInt N; 1228 1229 ierr = DMGetGlobalVector(next->dm,&global);CHKERRQ(ierr); 1230 ierr = VecGetLocalSize(global,&N);CHKERRQ(ierr); 1231 ierr = VecPlaceArray(global,garray);CHKERRQ(ierr); 1232 ierr = DMGetLocalVector(next->dm,&local);CHKERRQ(ierr); 1233 ierr = VecPlaceArray(local,larray);CHKERRQ(ierr); 1234 ierr = DMGlobalToLocalBegin(next->dm,global,mode,local);CHKERRQ(ierr); 1235 ierr = DMGlobalToLocalEnd(next->dm,global,mode,local);CHKERRQ(ierr); 1236 ierr = VecResetArray(global);CHKERRQ(ierr); 1237 ierr = VecResetArray(local);CHKERRQ(ierr); 1238 ierr = DMRestoreGlobalVector(next->dm,&global);CHKERRQ(ierr); 1239 ierr = DMRestoreGlobalVector(next->dm,&local);CHKERRQ(ierr); 1240 cnt++; 1241 larray += next->nlocal; 1242 next = next->next; 1243 } 1244 1245 ierr = VecRestoreArray(gvec,NULL);CHKERRQ(ierr); 1246 ierr = VecRestoreArray(lvec,NULL);CHKERRQ(ierr); 1247 PetscFunctionReturn(0); 1248 } 1249 1250 #undef __FUNCT__ 1251 #define __FUNCT__ "DMGlobalToLocalEnd_Composite" 1252 PetscErrorCode DMGlobalToLocalEnd_Composite(DM dm,Vec gvec,InsertMode mode,Vec lvec) 1253 { 1254 PetscFunctionBegin; 1255 PetscFunctionReturn(0); 1256 } 1257 1258 /*MC 1259 DMCOMPOSITE = "composite" - A DM object that is used to manage data for a collection of DMs 1260 1261 1262 1263 Level: intermediate 1264 1265 .seealso: DMType, DMCOMPOSITE, DMDACreate(), DMCreate(), DMSetType(), DMCompositeCreate() 1266 M*/ 1267 1268 1269 EXTERN_C_BEGIN 1270 #undef __FUNCT__ 1271 #define __FUNCT__ "DMCreate_Composite" 1272 PetscErrorCode DMCreate_Composite(DM p) 1273 { 1274 PetscErrorCode ierr; 1275 DM_Composite *com; 1276 1277 PetscFunctionBegin; 1278 ierr = PetscNewLog(p,DM_Composite,&com);CHKERRQ(ierr); 1279 p->data = com; 1280 ierr = PetscObjectChangeTypeName((PetscObject)p,"DMComposite");CHKERRQ(ierr); 1281 com->n = 0; 1282 com->next = NULL; 1283 com->nDM = 0; 1284 1285 p->ops->createglobalvector = DMCreateGlobalVector_Composite; 1286 p->ops->createlocalvector = DMCreateLocalVector_Composite; 1287 p->ops->createlocaltoglobalmapping = DMCreateLocalToGlobalMapping_Composite; 1288 p->ops->createlocaltoglobalmappingblock = 0; 1289 p->ops->createfieldis = DMCreateFieldIS_Composite; 1290 p->ops->createfielddecomposition = DMCreateFieldDecomposition_Composite; 1291 p->ops->refine = DMRefine_Composite; 1292 p->ops->coarsen = DMCoarsen_Composite; 1293 p->ops->createinterpolation = DMCreateInterpolation_Composite; 1294 p->ops->creatematrix = DMCreateMatrix_Composite; 1295 p->ops->getcoloring = DMCreateColoring_Composite; 1296 p->ops->globaltolocalbegin = DMGlobalToLocalBegin_Composite; 1297 p->ops->globaltolocalend = DMGlobalToLocalEnd_Composite; 1298 p->ops->destroy = DMDestroy_Composite; 1299 p->ops->view = DMView_Composite; 1300 p->ops->setup = DMSetUp_Composite; 1301 PetscFunctionReturn(0); 1302 } 1303 EXTERN_C_END 1304 1305 #undef __FUNCT__ 1306 #define __FUNCT__ "DMCompositeCreate" 1307 /*@C 1308 DMCompositeCreate - Creates a vector packer, used to generate "composite" 1309 vectors made up of several subvectors. 1310 1311 Collective on MPI_Comm 1312 1313 Input Parameter: 1314 . comm - the processors that will share the global vector 1315 1316 Output Parameters: 1317 . packer - the packer object 1318 1319 Level: advanced 1320 1321 .seealso DMDestroy(), DMCompositeAddDM(), DMCompositeScatter(), 1322 DMCompositeGather(), DMCreateGlobalVector(), DMCompositeGetISLocalToGlobalMappings(), DMCompositeGetAccess() 1323 DMCompositeGetLocalVectors(), DMCompositeRestoreLocalVectors(), DMCompositeGetEntries() 1324 1325 @*/ 1326 PetscErrorCode DMCompositeCreate(MPI_Comm comm,DM *packer) 1327 { 1328 PetscErrorCode ierr; 1329 1330 PetscFunctionBegin; 1331 PetscValidPointer(packer,2); 1332 ierr = DMCreate(comm,packer);CHKERRQ(ierr); 1333 ierr = DMSetType(*packer,DMCOMPOSITE);CHKERRQ(ierr); 1334 PetscFunctionReturn(0); 1335 } 1336