1 2 #include <../src/dm/impls/composite/packimpl.h> /*I "petscdmcomposite.h" I*/ 3 4 #undef __FUNCT__ 5 #define __FUNCT__ "DMCompositeSetCoupling" 6 /*@C 7 DMCompositeSetCoupling - Sets user provided routines that compute the coupling between the 8 seperate components (DMs) in a DMto build the correct matrix nonzero structure. 9 10 11 Logically Collective on MPI_Comm 12 13 Input Parameter: 14 + dm - the composite object 15 - formcouplelocations - routine to set the nonzero locations in the matrix 16 17 Level: advanced 18 19 Notes: See DMSetApplicationContext() and DMGetApplicationContext() for how to get user information into 20 this routine 21 22 @*/ 23 PetscErrorCode DMCompositeSetCoupling(DM dm,PetscErrorCode (*FormCoupleLocations)(DM,Mat,PetscInt*,PetscInt*,PetscInt,PetscInt,PetscInt,PetscInt)) 24 { 25 DM_Composite *com = (DM_Composite*)dm->data; 26 27 PetscFunctionBegin; 28 com->FormCoupleLocations = FormCoupleLocations; 29 PetscFunctionReturn(0); 30 } 31 32 #undef __FUNCT__ 33 #define __FUNCT__ "DMDestroy_Composite" 34 PetscErrorCode DMDestroy_Composite(DM dm) 35 { 36 PetscErrorCode ierr; 37 struct DMCompositeLink *next, *prev; 38 DM_Composite *com = (DM_Composite*)dm->data; 39 40 PetscFunctionBegin; 41 next = com->next; 42 while (next) { 43 prev = next; 44 next = next->next; 45 ierr = DMDestroy(&prev->dm);CHKERRQ(ierr); 46 ierr = PetscFree(prev->grstarts);CHKERRQ(ierr); 47 ierr = PetscFree(prev);CHKERRQ(ierr); 48 } 49 /* This was originally freed in DMDestroy(), but that prevents reference counting of backend objects */ 50 ierr = PetscFree(com);CHKERRQ(ierr); 51 PetscFunctionReturn(0); 52 } 53 54 #undef __FUNCT__ 55 #define __FUNCT__ "DMView_Composite" 56 PetscErrorCode DMView_Composite(DM dm,PetscViewer v) 57 { 58 PetscErrorCode ierr; 59 PetscBool iascii; 60 DM_Composite *com = (DM_Composite*)dm->data; 61 62 PetscFunctionBegin; 63 ierr = PetscObjectTypeCompare((PetscObject)v,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr); 64 if (iascii) { 65 struct DMCompositeLink *lnk = com->next; 66 PetscInt i; 67 68 ierr = PetscViewerASCIIPrintf(v,"DM (%s)\n",((PetscObject)dm)->prefix ? ((PetscObject)dm)->prefix : "no prefix");CHKERRQ(ierr); 69 ierr = PetscViewerASCIIPrintf(v," contains %D DMs\n",com->nDM);CHKERRQ(ierr); 70 ierr = PetscViewerASCIIPushTab(v);CHKERRQ(ierr); 71 for (i=0; lnk; lnk=lnk->next,i++) { 72 ierr = PetscViewerASCIIPrintf(v,"Link %D: DM of type %s\n",i,((PetscObject)lnk->dm)->type_name);CHKERRQ(ierr); 73 ierr = PetscViewerASCIIPushTab(v);CHKERRQ(ierr); 74 ierr = DMView(lnk->dm,v);CHKERRQ(ierr); 75 ierr = PetscViewerASCIIPopTab(v);CHKERRQ(ierr); 76 } 77 ierr = PetscViewerASCIIPopTab(v);CHKERRQ(ierr); 78 } 79 PetscFunctionReturn(0); 80 } 81 82 /* --------------------------------------------------------------------------------------*/ 83 #undef __FUNCT__ 84 #define __FUNCT__ "DMSetUp_Composite" 85 PetscErrorCode DMSetUp_Composite(DM dm) 86 { 87 PetscErrorCode ierr; 88 PetscInt nprev = 0; 89 PetscMPIInt rank,size; 90 DM_Composite *com = (DM_Composite*)dm->data; 91 struct DMCompositeLink *next = com->next; 92 PetscLayout map; 93 94 PetscFunctionBegin; 95 if (com->setup) SETERRQ(PetscObjectComm((PetscObject)dm),PETSC_ERR_ARG_WRONGSTATE,"Packer has already been setup"); 96 ierr = PetscLayoutCreate(PetscObjectComm((PetscObject)dm),&map);CHKERRQ(ierr); 97 ierr = PetscLayoutSetLocalSize(map,com->n);CHKERRQ(ierr); 98 ierr = PetscLayoutSetSize(map,PETSC_DETERMINE);CHKERRQ(ierr); 99 ierr = PetscLayoutSetBlockSize(map,1);CHKERRQ(ierr); 100 ierr = PetscLayoutSetUp(map);CHKERRQ(ierr); 101 ierr = PetscLayoutGetSize(map,&com->N);CHKERRQ(ierr); 102 ierr = PetscLayoutGetRange(map,&com->rstart,NULL);CHKERRQ(ierr); 103 ierr = PetscLayoutDestroy(&map);CHKERRQ(ierr); 104 105 /* now set the rstart for each linked vector */ 106 ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)dm),&rank);CHKERRQ(ierr); 107 ierr = MPI_Comm_size(PetscObjectComm((PetscObject)dm),&size);CHKERRQ(ierr); 108 while (next) { 109 next->rstart = nprev; 110 nprev += next->n; 111 next->grstart = com->rstart + next->rstart; 112 ierr = PetscMalloc(size*sizeof(PetscInt),&next->grstarts);CHKERRQ(ierr); 113 ierr = MPI_Allgather(&next->grstart,1,MPIU_INT,next->grstarts,1,MPIU_INT,PetscObjectComm((PetscObject)dm));CHKERRQ(ierr); 114 next = next->next; 115 } 116 com->setup = PETSC_TRUE; 117 PetscFunctionReturn(0); 118 } 119 120 /* ----------------------------------------------------------------------------------*/ 121 122 #undef __FUNCT__ 123 #define __FUNCT__ "DMCompositeGetNumberDM" 124 /*@ 125 DMCompositeGetNumberDM - Get's the number of DM objects in the DMComposite 126 representation. 127 128 Not Collective 129 130 Input Parameter: 131 . dm - the packer object 132 133 Output Parameter: 134 . nDM - the number of DMs 135 136 Level: beginner 137 138 @*/ 139 PetscErrorCode DMCompositeGetNumberDM(DM dm,PetscInt *nDM) 140 { 141 DM_Composite *com = (DM_Composite*)dm->data; 142 143 PetscFunctionBegin; 144 PetscValidHeaderSpecific(dm,DM_CLASSID,1); 145 *nDM = com->nDM; 146 PetscFunctionReturn(0); 147 } 148 149 150 #undef __FUNCT__ 151 #define __FUNCT__ "DMCompositeGetAccess" 152 /*@C 153 DMCompositeGetAccess - Allows one to access the individual packed vectors in their global 154 representation. 155 156 Collective on DMComposite 157 158 Input Parameters: 159 + dm - the packer object 160 - gvec - the global vector 161 162 Output Parameters: 163 . Vec* ... - the packed parallel vectors, NULL for those that are not needed 164 165 Notes: Use DMCompositeRestoreAccess() to return the vectors when you no longer need them 166 167 Fortran Notes: 168 169 Fortran callers must use numbered versions of this routine, e.g., DMCompositeGetAccess4(dm,gvec,vec1,vec2,vec3,vec4) 170 or use the alternative interface DMCompositeGetAccessArray(). 171 172 Level: advanced 173 174 .seealso: DMCompositeGetEntries(), DMCompositeScatter() 175 @*/ 176 PetscErrorCode DMCompositeGetAccess(DM dm,Vec gvec,...) 177 { 178 va_list Argp; 179 PetscErrorCode ierr; 180 struct DMCompositeLink *next; 181 DM_Composite *com = (DM_Composite*)dm->data; 182 183 PetscFunctionBegin; 184 PetscValidHeaderSpecific(dm,DM_CLASSID,1); 185 PetscValidHeaderSpecific(gvec,VEC_CLASSID,2); 186 next = com->next; 187 if (!com->setup) { 188 ierr = DMSetUp(dm);CHKERRQ(ierr); 189 } 190 191 /* loop over packed objects, handling one at at time */ 192 va_start(Argp,gvec); 193 while (next) { 194 Vec *vec; 195 vec = va_arg(Argp, Vec*); 196 if (vec) { 197 PetscScalar *array; 198 ierr = DMGetGlobalVector(next->dm,vec);CHKERRQ(ierr); 199 ierr = VecGetArray(gvec,&array);CHKERRQ(ierr); 200 ierr = VecPlaceArray(*vec,array+next->rstart);CHKERRQ(ierr); 201 ierr = VecRestoreArray(gvec,&array);CHKERRQ(ierr); 202 } 203 next = next->next; 204 } 205 va_end(Argp); 206 PetscFunctionReturn(0); 207 } 208 209 #undef __FUNCT__ 210 #define __FUNCT__ "DMCompositeGetAccessArray" 211 /*@C 212 DMCompositeGetAccessArray - Allows one to access the individual packed vectors in their global 213 representation. 214 215 Collective on DMComposite 216 217 Input Parameters: 218 + dm - the packer object 219 . pvec - packed vector 220 . nwanted - number of vectors wanted 221 - wanted - sorted array of vectors wanted, or NULL to get all vectors 222 223 Output Parameters: 224 . vecs - array of requested global vectors (must be allocated) 225 226 Notes: Use DMCompositeRestoreAccessArray() to return the vectors when you no longer need them 227 228 Level: advanced 229 230 .seealso: DMCompositeGetAccess(), DMCompositeGetEntries(), DMCompositeScatter(), DMCompositeGather() 231 @*/ 232 PetscErrorCode DMCompositeGetAccessArray(DM dm,Vec pvec,PetscInt nwanted,const PetscInt *wanted,Vec *vecs) 233 { 234 PetscErrorCode ierr; 235 struct DMCompositeLink *link; 236 PetscInt i,wnum; 237 DM_Composite *com = (DM_Composite*)dm->data; 238 239 PetscFunctionBegin; 240 PetscValidHeaderSpecific(dm,DM_CLASSID,1); 241 PetscValidHeaderSpecific(pvec,VEC_CLASSID,2); 242 if (!com->setup) { 243 ierr = DMSetUp(dm);CHKERRQ(ierr); 244 } 245 246 for (i=0,wnum=0,link=com->next; link && wnum<nwanted; i++,link=link->next) { 247 if (!wanted || i == wanted[wnum]) { 248 PetscScalar *array; 249 Vec v; 250 ierr = DMGetGlobalVector(link->dm,&v);CHKERRQ(ierr); 251 ierr = VecGetArray(pvec,&array);CHKERRQ(ierr); 252 ierr = VecPlaceArray(v,array+link->rstart);CHKERRQ(ierr); 253 ierr = VecRestoreArray(pvec,&array);CHKERRQ(ierr); 254 vecs[wnum++] = v; 255 } 256 } 257 PetscFunctionReturn(0); 258 } 259 260 #undef __FUNCT__ 261 #define __FUNCT__ "DMCompositeRestoreAccess" 262 /*@C 263 DMCompositeRestoreAccess - Returns the vectors obtained with DMCompositeGetAccess() 264 representation. 265 266 Collective on DMComposite 267 268 Input Parameters: 269 + dm - the packer object 270 . gvec - the global vector 271 - Vec* ... - the individual parallel vectors, NULL for those that are not needed 272 273 Level: advanced 274 275 .seealso DMCompositeAddDM(), DMCreateGlobalVector(), 276 DMCompositeGather(), DMCompositeCreate(), DMCompositeGetISLocalToGlobalMappings(), DMCompositeScatter(), 277 DMCompositeRestoreAccess(), DMCompositeGetAccess() 278 279 @*/ 280 PetscErrorCode DMCompositeRestoreAccess(DM dm,Vec gvec,...) 281 { 282 va_list Argp; 283 PetscErrorCode ierr; 284 struct DMCompositeLink *next; 285 DM_Composite *com = (DM_Composite*)dm->data; 286 287 PetscFunctionBegin; 288 PetscValidHeaderSpecific(dm,DM_CLASSID,1); 289 PetscValidHeaderSpecific(gvec,VEC_CLASSID,2); 290 next = com->next; 291 if (!com->setup) { 292 ierr = DMSetUp(dm);CHKERRQ(ierr); 293 } 294 295 /* loop over packed objects, handling one at at time */ 296 va_start(Argp,gvec); 297 while (next) { 298 Vec *vec; 299 vec = va_arg(Argp, Vec*); 300 if (vec) { 301 ierr = VecResetArray(*vec);CHKERRQ(ierr); 302 ierr = DMRestoreGlobalVector(next->dm,vec);CHKERRQ(ierr); 303 } 304 next = next->next; 305 } 306 va_end(Argp); 307 PetscFunctionReturn(0); 308 } 309 310 #undef __FUNCT__ 311 #define __FUNCT__ "DMCompositeRestoreAccessArray" 312 /*@C 313 DMCompositeRestoreAccessArray - Returns the vectors obtained with DMCompositeGetAccessArray() 314 315 Collective on DMComposite 316 317 Input Parameters: 318 + dm - the packer object 319 . pvec - packed vector 320 . nwanted - number of vectors wanted 321 . wanted - sorted array of vectors wanted, or NULL to get all vectors 322 - vecs - array of global vectors to return 323 324 Level: advanced 325 326 .seealso: DMCompositeRestoreAccess(), DMCompositeRestoreEntries(), DMCompositeScatter(), DMCompositeGather() 327 @*/ 328 PetscErrorCode DMCompositeRestoreAccessArray(DM dm,Vec pvec,PetscInt nwanted,const PetscInt *wanted,Vec *vecs) 329 { 330 PetscErrorCode ierr; 331 struct DMCompositeLink *link; 332 PetscInt i,wnum; 333 DM_Composite *com = (DM_Composite*)dm->data; 334 335 PetscFunctionBegin; 336 PetscValidHeaderSpecific(dm,DM_CLASSID,1); 337 PetscValidHeaderSpecific(pvec,VEC_CLASSID,2); 338 if (!com->setup) { 339 ierr = DMSetUp(dm);CHKERRQ(ierr); 340 } 341 342 for (i=0,wnum=0,link=com->next; link && wnum<nwanted; i++,link=link->next) { 343 if (!wanted || i == wanted[wnum]) { 344 ierr = VecResetArray(vecs[wnum]);CHKERRQ(ierr); 345 ierr = DMRestoreGlobalVector(link->dm,&vecs[wnum]);CHKERRQ(ierr); 346 wnum++; 347 } 348 } 349 PetscFunctionReturn(0); 350 } 351 352 #undef __FUNCT__ 353 #define __FUNCT__ "DMCompositeScatter" 354 /*@C 355 DMCompositeScatter - Scatters from a global packed vector into its individual local vectors 356 357 Collective on DMComposite 358 359 Input Parameters: 360 + dm - the packer object 361 . gvec - the global vector 362 - Vec ... - the individual sequential vectors, NULL for those that are not needed 363 364 Level: advanced 365 366 Notes: 367 DMCompositeScatterArray() is a non-variadic alternative that is often more convenient for library callers and is 368 accessible from Fortran. 369 370 .seealso DMDestroy(), DMCompositeAddDM(), DMCreateGlobalVector(), 371 DMCompositeGather(), DMCompositeCreate(), DMCompositeGetISLocalToGlobalMappings(), DMCompositeGetAccess(), 372 DMCompositeGetLocalVectors(), DMCompositeRestoreLocalVectors(), DMCompositeGetEntries() 373 DMCompositeScatterArray() 374 375 @*/ 376 PetscErrorCode DMCompositeScatter(DM dm,Vec gvec,...) 377 { 378 va_list Argp; 379 PetscErrorCode ierr; 380 struct DMCompositeLink *next; 381 PetscInt cnt; 382 DM_Composite *com = (DM_Composite*)dm->data; 383 384 PetscFunctionBegin; 385 PetscValidHeaderSpecific(dm,DM_CLASSID,1); 386 PetscValidHeaderSpecific(gvec,VEC_CLASSID,2); 387 if (!com->setup) { 388 ierr = DMSetUp(dm);CHKERRQ(ierr); 389 } 390 391 /* loop over packed objects, handling one at at time */ 392 va_start(Argp,gvec); 393 for (cnt=3,next=com->next; next; cnt++,next=next->next) { 394 Vec local; 395 local = va_arg(Argp, Vec); 396 if (local) { 397 Vec global; 398 PetscScalar *array; 399 PetscValidHeaderSpecific(local,VEC_CLASSID,cnt); 400 ierr = DMGetGlobalVector(next->dm,&global);CHKERRQ(ierr); 401 ierr = VecGetArray(gvec,&array);CHKERRQ(ierr); 402 ierr = VecPlaceArray(global,array+next->rstart);CHKERRQ(ierr); 403 ierr = DMGlobalToLocalBegin(next->dm,global,INSERT_VALUES,local);CHKERRQ(ierr); 404 ierr = DMGlobalToLocalEnd(next->dm,global,INSERT_VALUES,local);CHKERRQ(ierr); 405 ierr = VecRestoreArray(gvec,&array);CHKERRQ(ierr); 406 ierr = VecResetArray(global);CHKERRQ(ierr); 407 ierr = DMRestoreGlobalVector(next->dm,&global);CHKERRQ(ierr); 408 } 409 } 410 va_end(Argp); 411 PetscFunctionReturn(0); 412 } 413 414 #undef __FUNCT__ 415 #define __FUNCT__ "DMCompositeScatterArray" 416 /*@ 417 DMCompositeScatterArray - Scatters from a global packed vector into its individual local vectors 418 419 Collective on DMComposite 420 421 Input Parameters: 422 + dm - the packer object 423 . gvec - the global vector 424 . lvecs - array of local vectors, NULL for any that are not needed 425 426 Level: advanced 427 428 Note: 429 This is a non-variadic alternative to DMCompositeScatterArray() 430 431 .seealso DMDestroy(), DMCompositeAddDM(), DMCreateGlobalVector() 432 DMCompositeGather(), DMCompositeCreate(), DMCompositeGetISLocalToGlobalMappings(), DMCompositeGetAccess(), 433 DMCompositeGetLocalVectors(), DMCompositeRestoreLocalVectors(), DMCompositeGetEntries() 434 435 @*/ 436 PetscErrorCode DMCompositeScatterArray(DM dm,Vec gvec,Vec *lvecs) 437 { 438 PetscErrorCode ierr; 439 struct DMCompositeLink *next; 440 PetscInt i; 441 DM_Composite *com = (DM_Composite*)dm->data; 442 443 PetscFunctionBegin; 444 PetscValidHeaderSpecific(dm,DM_CLASSID,1); 445 PetscValidHeaderSpecific(gvec,VEC_CLASSID,2); 446 if (!com->setup) { 447 ierr = DMSetUp(dm);CHKERRQ(ierr); 448 } 449 450 /* loop over packed objects, handling one at at time */ 451 for (i=0,next=com->next; next; next=next->next,i++) { 452 if (lvecs[i]) { 453 Vec global; 454 PetscScalar *array; 455 PetscValidHeaderSpecific(lvecs[i],VEC_CLASSID,3); 456 ierr = DMGetGlobalVector(next->dm,&global);CHKERRQ(ierr); 457 ierr = VecGetArray(gvec,&array);CHKERRQ(ierr); 458 ierr = VecPlaceArray(global,array+next->rstart);CHKERRQ(ierr); 459 ierr = DMGlobalToLocalBegin(next->dm,global,INSERT_VALUES,lvecs[i]);CHKERRQ(ierr); 460 ierr = DMGlobalToLocalEnd(next->dm,global,INSERT_VALUES,lvecs[i]);CHKERRQ(ierr); 461 ierr = VecRestoreArray(gvec,&array);CHKERRQ(ierr); 462 ierr = VecResetArray(global);CHKERRQ(ierr); 463 ierr = DMRestoreGlobalVector(next->dm,&global);CHKERRQ(ierr); 464 } 465 } 466 PetscFunctionReturn(0); 467 } 468 469 #undef __FUNCT__ 470 #define __FUNCT__ "DMCompositeGather" 471 /*@C 472 DMCompositeGather - Gathers into a global packed vector from its individual local vectors 473 474 Collective on DMComposite 475 476 Input Parameter: 477 + dm - the packer object 478 . gvec - the global vector 479 - Vec ... - the individual sequential vectors, NULL for any that are not needed 480 481 Level: advanced 482 483 .seealso DMDestroy(), DMCompositeAddDM(), DMCreateGlobalVector(), 484 DMCompositeScatter(), DMCompositeCreate(), DMCompositeGetISLocalToGlobalMappings(), DMCompositeGetAccess(), 485 DMCompositeGetLocalVectors(), DMCompositeRestoreLocalVectors(), DMCompositeGetEntries() 486 487 @*/ 488 PetscErrorCode DMCompositeGather(DM dm,Vec gvec,InsertMode imode,...) 489 { 490 va_list Argp; 491 PetscErrorCode ierr; 492 struct DMCompositeLink *next; 493 DM_Composite *com = (DM_Composite*)dm->data; 494 PetscInt cnt; 495 496 PetscFunctionBegin; 497 PetscValidHeaderSpecific(dm,DM_CLASSID,1); 498 PetscValidHeaderSpecific(gvec,VEC_CLASSID,2); 499 if (!com->setup) { 500 ierr = DMSetUp(dm);CHKERRQ(ierr); 501 } 502 503 /* loop over packed objects, handling one at at time */ 504 va_start(Argp,imode); 505 for (cnt=3,next=com->next; next; cnt++,next=next->next) { 506 Vec local; 507 local = va_arg(Argp, Vec); 508 if (local) { 509 PetscScalar *array; 510 Vec global; 511 PetscValidHeaderSpecific(local,VEC_CLASSID,cnt); 512 ierr = DMGetGlobalVector(next->dm,&global);CHKERRQ(ierr); 513 ierr = VecGetArray(gvec,&array);CHKERRQ(ierr); 514 ierr = VecPlaceArray(global,array+next->rstart);CHKERRQ(ierr); 515 ierr = DMLocalToGlobalBegin(next->dm,local,imode,global);CHKERRQ(ierr); 516 ierr = DMLocalToGlobalEnd(next->dm,local,imode,global);CHKERRQ(ierr); 517 ierr = VecRestoreArray(gvec,&array);CHKERRQ(ierr); 518 ierr = VecResetArray(global);CHKERRQ(ierr); 519 ierr = DMRestoreGlobalVector(next->dm,&global);CHKERRQ(ierr); 520 } 521 } 522 va_end(Argp); 523 PetscFunctionReturn(0); 524 } 525 526 #undef __FUNCT__ 527 #define __FUNCT__ "DMCompositeGatherArray" 528 /*@ 529 DMCompositeGatherArray - Gathers into a global packed vector from its individual local vectors 530 531 Collective on DMComposite 532 533 Input Parameter: 534 + dm - the packer object 535 . gvec - the global vector 536 - lvecs - the individual sequential vectors, NULL for any that are not needed 537 538 Level: advanced 539 540 Notes: 541 This is a non-variadic alternative to DMCompositeGather(). 542 543 .seealso DMDestroy(), DMCompositeAddDM(), DMCreateGlobalVector(), 544 DMCompositeScatter(), DMCompositeCreate(), DMCompositeGetISLocalToGlobalMappings(), DMCompositeGetAccess(), 545 DMCompositeGetLocalVectors(), DMCompositeRestoreLocalVectors(), DMCompositeGetEntries(), 546 @*/ 547 PetscErrorCode DMCompositeGatherArray(DM dm,Vec gvec,InsertMode imode,Vec *lvecs) 548 { 549 PetscErrorCode ierr; 550 struct DMCompositeLink *next; 551 DM_Composite *com = (DM_Composite*)dm->data; 552 PetscInt i; 553 554 PetscFunctionBegin; 555 PetscValidHeaderSpecific(dm,DM_CLASSID,1); 556 PetscValidHeaderSpecific(gvec,VEC_CLASSID,2); 557 if (!com->setup) { 558 ierr = DMSetUp(dm);CHKERRQ(ierr); 559 } 560 561 /* loop over packed objects, handling one at at time */ 562 for (next=com->next,i=0; next; next=next->next,i++) { 563 if (lvecs[i]) { 564 PetscScalar *array; 565 Vec global; 566 PetscValidHeaderSpecific(lvecs[i],VEC_CLASSID,3); 567 ierr = DMGetGlobalVector(next->dm,&global);CHKERRQ(ierr); 568 ierr = VecGetArray(gvec,&array);CHKERRQ(ierr); 569 ierr = VecPlaceArray(global,array+next->rstart);CHKERRQ(ierr); 570 ierr = DMLocalToGlobalBegin(next->dm,lvecs[i],imode,global);CHKERRQ(ierr); 571 ierr = DMLocalToGlobalEnd(next->dm,lvecs[i],imode,global);CHKERRQ(ierr); 572 ierr = VecRestoreArray(gvec,&array);CHKERRQ(ierr); 573 ierr = VecResetArray(global);CHKERRQ(ierr); 574 ierr = DMRestoreGlobalVector(next->dm,&global);CHKERRQ(ierr); 575 } 576 } 577 PetscFunctionReturn(0); 578 } 579 580 #undef __FUNCT__ 581 #define __FUNCT__ "DMCompositeAddDM" 582 /*@C 583 DMCompositeAddDM - adds a DM vector to a DMComposite 584 585 Collective on DMComposite 586 587 Input Parameter: 588 + dm - the packer object 589 - dm - the DM object, if the DM is a da you will need to caste it with a (DM) 590 591 Level: advanced 592 593 .seealso DMDestroy(), DMCompositeGather(), DMCompositeAddDM(), DMCreateGlobalVector(), 594 DMCompositeScatter(), DMCompositeCreate(), DMCompositeGetISLocalToGlobalMappings(), DMCompositeGetAccess(), 595 DMCompositeGetLocalVectors(), DMCompositeRestoreLocalVectors(), DMCompositeGetEntries() 596 597 @*/ 598 PetscErrorCode DMCompositeAddDM(DM dmc,DM dm) 599 { 600 PetscErrorCode ierr; 601 PetscInt n,nlocal; 602 struct DMCompositeLink *mine,*next; 603 Vec global,local; 604 DM_Composite *com = (DM_Composite*)dmc->data; 605 606 PetscFunctionBegin; 607 PetscValidHeaderSpecific(dmc,DM_CLASSID,1); 608 PetscValidHeaderSpecific(dm,DM_CLASSID,2); 609 next = com->next; 610 if (com->setup) SETERRQ(PetscObjectComm((PetscObject)dmc),PETSC_ERR_ARG_WRONGSTATE,"Cannot add a DM once you have used the DMComposite"); 611 612 /* create new link */ 613 ierr = PetscNew(struct DMCompositeLink,&mine);CHKERRQ(ierr); 614 ierr = PetscObjectReference((PetscObject)dm);CHKERRQ(ierr); 615 ierr = DMGetGlobalVector(dm,&global);CHKERRQ(ierr); 616 ierr = VecGetLocalSize(global,&n);CHKERRQ(ierr); 617 ierr = DMRestoreGlobalVector(dm,&global);CHKERRQ(ierr); 618 ierr = DMGetLocalVector(dm,&local);CHKERRQ(ierr); 619 ierr = VecGetSize(local,&nlocal);CHKERRQ(ierr); 620 ierr = DMRestoreLocalVector(dm,&local);CHKERRQ(ierr); 621 622 mine->n = n; 623 mine->nlocal = nlocal; 624 mine->dm = dm; 625 mine->next = NULL; 626 com->n += n; 627 628 /* add to end of list */ 629 if (!next) com->next = mine; 630 else { 631 while (next->next) next = next->next; 632 next->next = mine; 633 } 634 com->nDM++; 635 com->nmine++; 636 PetscFunctionReturn(0); 637 } 638 639 #include <petscdraw.h> 640 PETSC_EXTERN PetscErrorCode VecView_MPI(Vec,PetscViewer); 641 #undef __FUNCT__ 642 #define __FUNCT__ "VecView_DMComposite" 643 PetscErrorCode VecView_DMComposite(Vec gvec,PetscViewer viewer) 644 { 645 DM dm; 646 PetscErrorCode ierr; 647 struct DMCompositeLink *next; 648 PetscBool isdraw; 649 DM_Composite *com; 650 651 PetscFunctionBegin; 652 ierr = VecGetDM(gvec, &dm);CHKERRQ(ierr); 653 if (!dm) SETERRQ(PetscObjectComm((PetscObject)gvec),PETSC_ERR_ARG_WRONG,"Vector not generated from a DMComposite"); 654 com = (DM_Composite*)dm->data; 655 next = com->next; 656 657 ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr); 658 if (!isdraw) { 659 /* do I really want to call this? */ 660 ierr = VecView_MPI(gvec,viewer);CHKERRQ(ierr); 661 } else { 662 PetscInt cnt = 0; 663 664 /* loop over packed objects, handling one at at time */ 665 while (next) { 666 Vec vec; 667 PetscScalar *array; 668 PetscInt bs; 669 670 /* Should use VecGetSubVector() eventually, but would need to forward the DM for that to work */ 671 ierr = DMGetGlobalVector(next->dm,&vec);CHKERRQ(ierr); 672 ierr = VecGetArray(gvec,&array);CHKERRQ(ierr); 673 ierr = VecPlaceArray(vec,array+next->rstart);CHKERRQ(ierr); 674 ierr = VecRestoreArray(gvec,&array);CHKERRQ(ierr); 675 ierr = VecView(vec,viewer);CHKERRQ(ierr); 676 ierr = VecGetBlockSize(vec,&bs);CHKERRQ(ierr); 677 ierr = VecResetArray(vec);CHKERRQ(ierr); 678 ierr = DMRestoreGlobalVector(next->dm,&vec);CHKERRQ(ierr); 679 ierr = PetscViewerDrawBaseAdd(viewer,bs);CHKERRQ(ierr); 680 cnt += bs; 681 next = next->next; 682 } 683 ierr = PetscViewerDrawBaseAdd(viewer,-cnt);CHKERRQ(ierr); 684 } 685 PetscFunctionReturn(0); 686 } 687 688 #undef __FUNCT__ 689 #define __FUNCT__ "DMCreateGlobalVector_Composite" 690 PetscErrorCode DMCreateGlobalVector_Composite(DM dm,Vec *gvec) 691 { 692 PetscErrorCode ierr; 693 DM_Composite *com = (DM_Composite*)dm->data; 694 695 PetscFunctionBegin; 696 PetscValidHeaderSpecific(dm,DM_CLASSID,1); 697 ierr = DMSetUp(dm);CHKERRQ(ierr); 698 ierr = VecCreateMPI(PetscObjectComm((PetscObject)dm),com->n,com->N,gvec);CHKERRQ(ierr); 699 ierr = VecSetDM(*gvec, dm);CHKERRQ(ierr); 700 ierr = VecSetOperation(*gvec,VECOP_VIEW,(void (*)(void))VecView_DMComposite);CHKERRQ(ierr); 701 PetscFunctionReturn(0); 702 } 703 704 #undef __FUNCT__ 705 #define __FUNCT__ "DMCreateLocalVector_Composite" 706 PetscErrorCode DMCreateLocalVector_Composite(DM dm,Vec *lvec) 707 { 708 PetscErrorCode ierr; 709 DM_Composite *com = (DM_Composite*)dm->data; 710 711 PetscFunctionBegin; 712 PetscValidHeaderSpecific(dm,DM_CLASSID,1); 713 if (!com->setup) { 714 ierr = DMSetUp(dm);CHKERRQ(ierr); 715 } 716 ierr = VecCreateSeq(PetscObjectComm((PetscObject)dm),com->nghost,lvec);CHKERRQ(ierr); 717 ierr = VecSetDM(*lvec, dm);CHKERRQ(ierr); 718 PetscFunctionReturn(0); 719 } 720 721 #undef __FUNCT__ 722 #define __FUNCT__ "DMCompositeGetISLocalToGlobalMappings" 723 /*@C 724 DMCompositeGetISLocalToGlobalMappings - gets an ISLocalToGlobalMapping for each DM in the DMComposite, maps to the composite global space 725 726 Collective on DM 727 728 Input Parameter: 729 . dm - the packer object 730 731 Output Parameters: 732 . ltogs - the individual mappings for each packed vector. Note that this includes 733 all the ghost points that individual ghosted DMDA's may have. 734 735 Level: advanced 736 737 Notes: 738 Each entry of ltogs should be destroyed with ISLocalToGlobalMappingDestroy(), the ltogs array should be freed with PetscFree(). 739 740 .seealso DMDestroy(), DMCompositeAddDM(), DMCreateGlobalVector(), 741 DMCompositeGather(), DMCompositeCreate(), DMCompositeGetAccess(), DMCompositeScatter(), 742 DMCompositeGetLocalVectors(), DMCompositeRestoreLocalVectors(),DMCompositeGetEntries() 743 744 @*/ 745 PetscErrorCode DMCompositeGetISLocalToGlobalMappings(DM dm,ISLocalToGlobalMapping **ltogs) 746 { 747 PetscErrorCode ierr; 748 PetscInt i,*idx,n,cnt; 749 struct DMCompositeLink *next; 750 PetscMPIInt rank; 751 DM_Composite *com = (DM_Composite*)dm->data; 752 753 PetscFunctionBegin; 754 PetscValidHeaderSpecific(dm,DM_CLASSID,1); 755 ierr = DMSetUp(dm);CHKERRQ(ierr); 756 ierr = PetscMalloc((com->nDM)*sizeof(ISLocalToGlobalMapping),ltogs);CHKERRQ(ierr); 757 next = com->next; 758 ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)dm),&rank);CHKERRQ(ierr); 759 760 /* loop over packed objects, handling one at at time */ 761 cnt = 0; 762 while (next) { 763 ISLocalToGlobalMapping ltog; 764 PetscMPIInt size; 765 const PetscInt *suboff,*indices; 766 Vec global; 767 768 /* Get sub-DM global indices for each local dof */ 769 ierr = DMGetLocalToGlobalMapping(next->dm,<og);CHKERRQ(ierr); 770 ierr = ISLocalToGlobalMappingGetSize(ltog,&n);CHKERRQ(ierr); 771 ierr = ISLocalToGlobalMappingGetIndices(ltog,&indices);CHKERRQ(ierr); 772 ierr = PetscMalloc(n*sizeof(PetscInt),&idx);CHKERRQ(ierr); 773 774 /* Get the offsets for the sub-DM global vector */ 775 ierr = DMGetGlobalVector(next->dm,&global);CHKERRQ(ierr); 776 ierr = VecGetOwnershipRanges(global,&suboff);CHKERRQ(ierr); 777 ierr = MPI_Comm_size(PetscObjectComm((PetscObject)global),&size);CHKERRQ(ierr); 778 779 /* Shift the sub-DM definition of the global space to the composite global space */ 780 for (i=0; i<n; i++) { 781 PetscInt subi = indices[i],lo = 0,hi = size,t; 782 /* Binary search to find which rank owns subi */ 783 while (hi-lo > 1) { 784 t = lo + (hi-lo)/2; 785 if (suboff[t] > subi) hi = t; 786 else lo = t; 787 } 788 idx[i] = subi - suboff[lo] + next->grstarts[lo]; 789 } 790 ierr = ISLocalToGlobalMappingRestoreIndices(ltog,&indices);CHKERRQ(ierr); 791 ierr = ISLocalToGlobalMappingCreate(PetscObjectComm((PetscObject)dm),n,idx,PETSC_OWN_POINTER,&(*ltogs)[cnt]);CHKERRQ(ierr); 792 ierr = DMRestoreGlobalVector(next->dm,&global);CHKERRQ(ierr); 793 next = next->next; 794 cnt++; 795 } 796 PetscFunctionReturn(0); 797 } 798 799 #undef __FUNCT__ 800 #define __FUNCT__ "DMCompositeGetLocalISs" 801 /*@C 802 DMCompositeGetLocalISs - Gets index sets for each component of a composite local vector 803 804 Not Collective 805 806 Input Arguments: 807 . dm - composite DM 808 809 Output Arguments: 810 . is - array of serial index sets for each each component of the DMComposite 811 812 Level: intermediate 813 814 Notes: 815 At present, a composite local vector does not normally exist. This function is used to provide index sets for 816 MatGetLocalSubMatrix(). In the future, the scatters for each entry in the DMComposite may be be merged into a single 817 scatter to a composite local vector. The user should not typically need to know which is being done. 818 819 To get the composite global indices at all local points (including ghosts), use DMCompositeGetISLocalToGlobalMappings(). 820 821 To get index sets for pieces of the composite global vector, use DMCompositeGetGlobalISs(). 822 823 Each returned IS should be destroyed with ISDestroy(), the array should be freed with PetscFree(). 824 825 .seealso: DMCompositeGetGlobalISs(), DMCompositeGetISLocalToGlobalMappings(), MatGetLocalSubMatrix(), MatCreateLocalRef() 826 @*/ 827 PetscErrorCode DMCompositeGetLocalISs(DM dm,IS **is) 828 { 829 PetscErrorCode ierr; 830 DM_Composite *com = (DM_Composite*)dm->data; 831 struct DMCompositeLink *link; 832 PetscInt cnt,start; 833 834 PetscFunctionBegin; 835 PetscValidHeaderSpecific(dm,DM_CLASSID,1); 836 PetscValidPointer(is,2); 837 ierr = PetscMalloc(com->nmine*sizeof(IS),is);CHKERRQ(ierr); 838 for (cnt=0,start=0,link=com->next; link; start+=link->nlocal,cnt++,link=link->next) { 839 PetscInt bs; 840 ierr = ISCreateStride(PETSC_COMM_SELF,link->nlocal,start,1,&(*is)[cnt]);CHKERRQ(ierr); 841 ierr = DMGetBlockSize(link->dm,&bs);CHKERRQ(ierr); 842 ierr = ISSetBlockSize((*is)[cnt],bs);CHKERRQ(ierr); 843 } 844 PetscFunctionReturn(0); 845 } 846 847 #undef __FUNCT__ 848 #define __FUNCT__ "DMCompositeGetGlobalISs" 849 /*@C 850 DMCompositeGetGlobalISs - Gets the index sets for each composed object 851 852 Collective on DMComposite 853 854 Input Parameter: 855 . dm - the packer object 856 857 Output Parameters: 858 . is - the array of index sets 859 860 Level: advanced 861 862 Notes: 863 The is entries should be destroyed with ISDestroy(), the is array should be freed with PetscFree() 864 865 These could be used to extract a subset of vector entries for a "multi-physics" preconditioner 866 867 Use DMCompositeGetLocalISs() for index sets in the packed local numbering, and 868 DMCompositeGetISLocalToGlobalMappings() for to map local sub-DM (including ghost) indices to packed global 869 indices. 870 871 .seealso DMDestroy(), DMCompositeAddDM(), DMCreateGlobalVector(), 872 DMCompositeGather(), DMCompositeCreate(), DMCompositeGetAccess(), DMCompositeScatter(), 873 DMCompositeGetLocalVectors(), DMCompositeRestoreLocalVectors(),DMCompositeGetEntries() 874 875 @*/ 876 877 PetscErrorCode DMCompositeGetGlobalISs(DM dm,IS *is[]) 878 { 879 PetscErrorCode ierr; 880 PetscInt cnt = 0,*idx,i; 881 struct DMCompositeLink *next; 882 PetscMPIInt rank; 883 DM_Composite *com = (DM_Composite*)dm->data; 884 885 PetscFunctionBegin; 886 PetscValidHeaderSpecific(dm,DM_CLASSID,1); 887 ierr = PetscMalloc((com->nDM)*sizeof(IS),is);CHKERRQ(ierr); 888 next = com->next; 889 ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)dm),&rank);CHKERRQ(ierr); 890 891 /* loop over packed objects, handling one at at time */ 892 while (next) { 893 ierr = PetscMalloc(next->n*sizeof(PetscInt),&idx);CHKERRQ(ierr); 894 for (i=0; i<next->n; i++) idx[i] = next->grstart + i; 895 ierr = ISCreateGeneral(PetscObjectComm((PetscObject)dm),next->n,idx,PETSC_OWN_POINTER,&(*is)[cnt]);CHKERRQ(ierr); 896 cnt++; 897 next = next->next; 898 } 899 PetscFunctionReturn(0); 900 } 901 902 #undef __FUNCT__ 903 #define __FUNCT__ "DMCreateFieldIS_Composite" 904 PetscErrorCode DMCreateFieldIS_Composite(DM dm, PetscInt *numFields,char ***fieldNames, IS **fields) 905 { 906 PetscInt nDM; 907 DM *dms; 908 PetscInt i; 909 PetscErrorCode ierr; 910 911 PetscFunctionBegin; 912 ierr = DMCompositeGetNumberDM(dm, &nDM);CHKERRQ(ierr); 913 if (numFields) *numFields = nDM; 914 ierr = DMCompositeGetGlobalISs(dm, fields);CHKERRQ(ierr); 915 if (fieldNames) { 916 ierr = PetscMalloc(nDM*sizeof(DM), &dms);CHKERRQ(ierr); 917 ierr = PetscMalloc(nDM*sizeof(const char*), fieldNames);CHKERRQ(ierr); 918 ierr = DMCompositeGetEntriesArray(dm, dms);CHKERRQ(ierr); 919 for (i=0; i<nDM; i++) { 920 char buf[256]; 921 const char *splitname; 922 923 /* Split naming precedence: object name, prefix, number */ 924 splitname = ((PetscObject) dm)->name; 925 if (!splitname) { 926 ierr = PetscObjectGetOptionsPrefix((PetscObject)dms[i],&splitname);CHKERRQ(ierr); 927 if (splitname) { 928 size_t len; 929 ierr = PetscStrncpy(buf,splitname,sizeof(buf));CHKERRQ(ierr); 930 buf[sizeof(buf) - 1] = 0; 931 ierr = PetscStrlen(buf,&len);CHKERRQ(ierr); 932 if (buf[len-1] == '_') buf[len-1] = 0; /* Remove trailing underscore if it was used */ 933 splitname = buf; 934 } 935 } 936 if (!splitname) { 937 ierr = PetscSNPrintf(buf,sizeof(buf),"%D",i);CHKERRQ(ierr); 938 splitname = buf; 939 } 940 ierr = PetscStrallocpy(splitname,&(*fieldNames)[i]);CHKERRQ(ierr); 941 } 942 ierr = PetscFree(dms);CHKERRQ(ierr); 943 } 944 PetscFunctionReturn(0); 945 } 946 947 /* 948 This could take over from DMCreateFieldIS(), as it is more general, 949 making DMCreateFieldIS() a special case -- calling with dmlist == NULL; 950 At this point it's probably best to be less intrusive, however. 951 */ 952 #undef __FUNCT__ 953 #define __FUNCT__ "DMCreateFieldDecomposition_Composite" 954 PetscErrorCode DMCreateFieldDecomposition_Composite(DM dm, PetscInt *len,char ***namelist, IS **islist, DM **dmlist) 955 { 956 PetscInt nDM; 957 PetscInt i; 958 PetscErrorCode ierr; 959 960 PetscFunctionBegin; 961 ierr = DMCreateFieldIS_Composite(dm, len, namelist, islist);CHKERRQ(ierr); 962 if (dmlist) { 963 ierr = DMCompositeGetNumberDM(dm, &nDM);CHKERRQ(ierr); 964 ierr = PetscMalloc(nDM*sizeof(DM), dmlist);CHKERRQ(ierr); 965 ierr = DMCompositeGetEntriesArray(dm, *dmlist);CHKERRQ(ierr); 966 for (i=0; i<nDM; i++) { 967 ierr = PetscObjectReference((PetscObject)((*dmlist)[i]));CHKERRQ(ierr); 968 } 969 } 970 PetscFunctionReturn(0); 971 } 972 973 974 975 /* -------------------------------------------------------------------------------------*/ 976 #undef __FUNCT__ 977 #define __FUNCT__ "DMCompositeGetLocalVectors" 978 /*@C 979 DMCompositeGetLocalVectors - Gets local vectors for each part of a DMComposite. 980 Use DMCompositeRestoreLocalVectors() to return them. 981 982 Not Collective 983 984 Input Parameter: 985 . dm - the packer object 986 987 Output Parameter: 988 . Vec ... - the individual sequential Vecs 989 990 Level: advanced 991 992 .seealso DMDestroy(), DMCompositeAddDM(), DMCreateGlobalVector(), 993 DMCompositeGather(), DMCompositeCreate(), DMCompositeGetISLocalToGlobalMappings(), DMCompositeGetAccess(), 994 DMCompositeRestoreLocalVectors(), DMCompositeScatter(), DMCompositeGetEntries() 995 996 @*/ 997 PetscErrorCode DMCompositeGetLocalVectors(DM dm,...) 998 { 999 va_list Argp; 1000 PetscErrorCode ierr; 1001 struct DMCompositeLink *next; 1002 DM_Composite *com = (DM_Composite*)dm->data; 1003 1004 PetscFunctionBegin; 1005 PetscValidHeaderSpecific(dm,DM_CLASSID,1); 1006 next = com->next; 1007 /* loop over packed objects, handling one at at time */ 1008 va_start(Argp,dm); 1009 while (next) { 1010 Vec *vec; 1011 vec = va_arg(Argp, Vec*); 1012 if (vec) {ierr = DMGetLocalVector(next->dm,vec);CHKERRQ(ierr);} 1013 next = next->next; 1014 } 1015 va_end(Argp); 1016 PetscFunctionReturn(0); 1017 } 1018 1019 #undef __FUNCT__ 1020 #define __FUNCT__ "DMCompositeRestoreLocalVectors" 1021 /*@C 1022 DMCompositeRestoreLocalVectors - Restores local vectors for each part of a DMComposite. 1023 1024 Not Collective 1025 1026 Input Parameter: 1027 . dm - the packer object 1028 1029 Output Parameter: 1030 . Vec ... - the individual sequential Vecs 1031 1032 Level: advanced 1033 1034 .seealso DMDestroy(), DMCompositeAddDM(), DMCreateGlobalVector(), 1035 DMCompositeGather(), DMCompositeCreate(), DMCompositeGetISLocalToGlobalMappings(), DMCompositeGetAccess(), 1036 DMCompositeGetLocalVectors(), DMCompositeScatter(), DMCompositeGetEntries() 1037 1038 @*/ 1039 PetscErrorCode DMCompositeRestoreLocalVectors(DM dm,...) 1040 { 1041 va_list Argp; 1042 PetscErrorCode ierr; 1043 struct DMCompositeLink *next; 1044 DM_Composite *com = (DM_Composite*)dm->data; 1045 1046 PetscFunctionBegin; 1047 PetscValidHeaderSpecific(dm,DM_CLASSID,1); 1048 next = com->next; 1049 /* loop over packed objects, handling one at at time */ 1050 va_start(Argp,dm); 1051 while (next) { 1052 Vec *vec; 1053 vec = va_arg(Argp, Vec*); 1054 if (vec) {ierr = DMRestoreLocalVector(next->dm,vec);CHKERRQ(ierr);} 1055 next = next->next; 1056 } 1057 va_end(Argp); 1058 PetscFunctionReturn(0); 1059 } 1060 1061 /* -------------------------------------------------------------------------------------*/ 1062 #undef __FUNCT__ 1063 #define __FUNCT__ "DMCompositeGetEntries" 1064 /*@C 1065 DMCompositeGetEntries - Gets the DM for each entry in a DMComposite. 1066 1067 Not Collective 1068 1069 Input Parameter: 1070 . dm - the packer object 1071 1072 Output Parameter: 1073 . DM ... - the individual entries (DMs) 1074 1075 Level: advanced 1076 1077 .seealso DMDestroy(), DMCompositeAddDM(), DMCreateGlobalVector(), DMCompositeGetEntriesArray() 1078 DMCompositeGather(), DMCompositeCreate(), DMCompositeGetISLocalToGlobalMappings(), DMCompositeGetAccess(), 1079 DMCompositeRestoreLocalVectors(), DMCompositeGetLocalVectors(), DMCompositeScatter(), 1080 DMCompositeGetLocalVectors(), DMCompositeRestoreLocalVectors() 1081 1082 @*/ 1083 PetscErrorCode DMCompositeGetEntries(DM dm,...) 1084 { 1085 va_list Argp; 1086 struct DMCompositeLink *next; 1087 DM_Composite *com = (DM_Composite*)dm->data; 1088 1089 PetscFunctionBegin; 1090 PetscValidHeaderSpecific(dm,DM_CLASSID,1); 1091 next = com->next; 1092 /* loop over packed objects, handling one at at time */ 1093 va_start(Argp,dm); 1094 while (next) { 1095 DM *dmn; 1096 dmn = va_arg(Argp, DM*); 1097 if (dmn) *dmn = next->dm; 1098 next = next->next; 1099 } 1100 va_end(Argp); 1101 PetscFunctionReturn(0); 1102 } 1103 1104 #undef __FUNCT__ 1105 #define __FUNCT__ "DMCompositeGetEntriesArray" 1106 /*@C 1107 DMCompositeGetEntriesArray - Gets the DM for each entry in a DMComposite. 1108 1109 Not Collective 1110 1111 Input Parameter: 1112 + dm - the packer object 1113 - dms - array of sufficient length (see DMCompositeGetNumberDM()), holds the DMs on output 1114 1115 Level: advanced 1116 1117 .seealso DMDestroy(), DMCompositeAddDM(), DMCreateGlobalVector(), DMCompositeGetEntries() 1118 DMCompositeGather(), DMCompositeCreate(), DMCompositeGetISLocalToGlobalMappings(), DMCompositeGetAccess(), 1119 DMCompositeRestoreLocalVectors(), DMCompositeGetLocalVectors(), DMCompositeScatter(), 1120 DMCompositeGetLocalVectors(), DMCompositeRestoreLocalVectors() 1121 1122 @*/ 1123 PetscErrorCode DMCompositeGetEntriesArray(DM dm,DM dms[]) 1124 { 1125 struct DMCompositeLink *next; 1126 DM_Composite *com = (DM_Composite*)dm->data; 1127 PetscInt i; 1128 1129 PetscFunctionBegin; 1130 PetscValidHeaderSpecific(dm,DM_CLASSID,1); 1131 /* loop over packed objects, handling one at at time */ 1132 for (next=com->next,i=0; next; next=next->next,i++) dms[i] = next->dm; 1133 PetscFunctionReturn(0); 1134 } 1135 1136 #undef __FUNCT__ 1137 #define __FUNCT__ "DMRefine_Composite" 1138 PetscErrorCode DMRefine_Composite(DM dmi,MPI_Comm comm,DM *fine) 1139 { 1140 PetscErrorCode ierr; 1141 struct DMCompositeLink *next; 1142 DM_Composite *com = (DM_Composite*)dmi->data; 1143 DM dm; 1144 1145 PetscFunctionBegin; 1146 PetscValidHeaderSpecific(dmi,DM_CLASSID,1); 1147 if (comm == MPI_COMM_NULL) { 1148 ierr = PetscObjectGetComm((PetscObject)dmi,&comm);CHKERRQ(ierr); 1149 } 1150 ierr = DMSetUp(dmi);CHKERRQ(ierr); 1151 next = com->next; 1152 ierr = DMCompositeCreate(comm,fine);CHKERRQ(ierr); 1153 1154 /* loop over packed objects, handling one at at time */ 1155 while (next) { 1156 ierr = DMRefine(next->dm,comm,&dm);CHKERRQ(ierr); 1157 ierr = DMCompositeAddDM(*fine,dm);CHKERRQ(ierr); 1158 ierr = PetscObjectDereference((PetscObject)dm);CHKERRQ(ierr); 1159 next = next->next; 1160 } 1161 PetscFunctionReturn(0); 1162 } 1163 1164 #undef __FUNCT__ 1165 #define __FUNCT__ "DMCoarsen_Composite" 1166 PetscErrorCode DMCoarsen_Composite(DM dmi,MPI_Comm comm,DM *fine) 1167 { 1168 PetscErrorCode ierr; 1169 struct DMCompositeLink *next; 1170 DM_Composite *com = (DM_Composite*)dmi->data; 1171 DM dm; 1172 1173 PetscFunctionBegin; 1174 PetscValidHeaderSpecific(dmi,DM_CLASSID,1); 1175 ierr = DMSetUp(dmi);CHKERRQ(ierr); 1176 if (comm == MPI_COMM_NULL) { 1177 ierr = PetscObjectGetComm((PetscObject)dmi,&comm);CHKERRQ(ierr); 1178 } 1179 next = com->next; 1180 ierr = DMCompositeCreate(comm,fine);CHKERRQ(ierr); 1181 1182 /* loop over packed objects, handling one at at time */ 1183 while (next) { 1184 ierr = DMCoarsen(next->dm,comm,&dm);CHKERRQ(ierr); 1185 ierr = DMCompositeAddDM(*fine,dm);CHKERRQ(ierr); 1186 ierr = PetscObjectDereference((PetscObject)dm);CHKERRQ(ierr); 1187 next = next->next; 1188 } 1189 PetscFunctionReturn(0); 1190 } 1191 1192 #undef __FUNCT__ 1193 #define __FUNCT__ "DMCreateInterpolation_Composite" 1194 PetscErrorCode DMCreateInterpolation_Composite(DM coarse,DM fine,Mat *A,Vec *v) 1195 { 1196 PetscErrorCode ierr; 1197 PetscInt m,n,M,N,nDM,i; 1198 struct DMCompositeLink *nextc; 1199 struct DMCompositeLink *nextf; 1200 Vec gcoarse,gfine,*vecs; 1201 DM_Composite *comcoarse = (DM_Composite*)coarse->data; 1202 DM_Composite *comfine = (DM_Composite*)fine->data; 1203 Mat *mats; 1204 1205 PetscFunctionBegin; 1206 PetscValidHeaderSpecific(coarse,DM_CLASSID,1); 1207 PetscValidHeaderSpecific(fine,DM_CLASSID,2); 1208 ierr = DMSetUp(coarse);CHKERRQ(ierr); 1209 ierr = DMSetUp(fine);CHKERRQ(ierr); 1210 /* use global vectors only for determining matrix layout */ 1211 ierr = DMGetGlobalVector(coarse,&gcoarse);CHKERRQ(ierr); 1212 ierr = DMGetGlobalVector(fine,&gfine);CHKERRQ(ierr); 1213 ierr = VecGetLocalSize(gcoarse,&n);CHKERRQ(ierr); 1214 ierr = VecGetLocalSize(gfine,&m);CHKERRQ(ierr); 1215 ierr = VecGetSize(gcoarse,&N);CHKERRQ(ierr); 1216 ierr = VecGetSize(gfine,&M);CHKERRQ(ierr); 1217 ierr = DMRestoreGlobalVector(coarse,&gcoarse);CHKERRQ(ierr); 1218 ierr = DMRestoreGlobalVector(fine,&gfine);CHKERRQ(ierr); 1219 1220 nDM = comfine->nDM; 1221 if (nDM != comcoarse->nDM) SETERRQ2(PetscObjectComm((PetscObject)fine),PETSC_ERR_ARG_INCOMP,"Fine DMComposite has %D entries, but coarse has %D",nDM,comcoarse->nDM); 1222 ierr = PetscMalloc(nDM*nDM*sizeof(Mat),&mats);CHKERRQ(ierr); 1223 ierr = PetscMemzero(mats,nDM*nDM*sizeof(Mat));CHKERRQ(ierr); 1224 if (v) { 1225 ierr = PetscMalloc(nDM*sizeof(Vec),&vecs);CHKERRQ(ierr); 1226 ierr = PetscMemzero(vecs,nDM*sizeof(Vec));CHKERRQ(ierr); 1227 } 1228 1229 /* loop over packed objects, handling one at at time */ 1230 for (nextc=comcoarse->next,nextf=comfine->next,i=0; nextc; nextc=nextc->next,nextf=nextf->next,i++) { 1231 if (!v) { 1232 ierr = DMCreateInterpolation(nextc->dm,nextf->dm,&mats[i*nDM+i],NULL);CHKERRQ(ierr); 1233 } else { 1234 ierr = DMCreateInterpolation(nextc->dm,nextf->dm,&mats[i*nDM+i],&vecs[i]);CHKERRQ(ierr); 1235 } 1236 } 1237 ierr = MatCreateNest(PetscObjectComm((PetscObject)fine),nDM,NULL,nDM,NULL,mats,A);CHKERRQ(ierr); 1238 if (v) { 1239 ierr = VecCreateNest(PetscObjectComm((PetscObject)fine),nDM,NULL,vecs,v);CHKERRQ(ierr); 1240 } 1241 for (i=0; i<nDM*nDM; i++) {ierr = MatDestroy(&mats[i]);CHKERRQ(ierr);} 1242 ierr = PetscFree(mats);CHKERRQ(ierr); 1243 if (v) { 1244 for (i=0; i<nDM; i++) {ierr = VecDestroy(&vecs[i]);CHKERRQ(ierr);} 1245 ierr = PetscFree(vecs);CHKERRQ(ierr); 1246 } 1247 PetscFunctionReturn(0); 1248 } 1249 1250 #undef __FUNCT__ 1251 #define __FUNCT__ "DMGetLocalToGlobalMapping_Composite" 1252 static PetscErrorCode DMGetLocalToGlobalMapping_Composite(DM dm) 1253 { 1254 DM_Composite *com = (DM_Composite*)dm->data; 1255 ISLocalToGlobalMapping *ltogs; 1256 PetscInt i; 1257 PetscErrorCode ierr; 1258 1259 PetscFunctionBegin; 1260 /* Set the ISLocalToGlobalMapping on the new matrix */ 1261 ierr = DMCompositeGetISLocalToGlobalMappings(dm,<ogs);CHKERRQ(ierr); 1262 ierr = ISLocalToGlobalMappingConcatenate(PetscObjectComm((PetscObject)dm),com->nDM,ltogs,&dm->ltogmap);CHKERRQ(ierr); 1263 for (i=0; i<com->nDM; i++) {ierr = ISLocalToGlobalMappingDestroy(<ogs[i]);CHKERRQ(ierr);} 1264 ierr = PetscFree(ltogs);CHKERRQ(ierr); 1265 PetscFunctionReturn(0); 1266 } 1267 1268 1269 #undef __FUNCT__ 1270 #define __FUNCT__ "DMCreateColoring_Composite" 1271 PetscErrorCode DMCreateColoring_Composite(DM dm,ISColoringType ctype,MatType mtype,ISColoring *coloring) 1272 { 1273 PetscErrorCode ierr; 1274 PetscInt n,i,cnt; 1275 ISColoringValue *colors; 1276 PetscBool dense = PETSC_FALSE; 1277 ISColoringValue maxcol = 0; 1278 DM_Composite *com = (DM_Composite*)dm->data; 1279 1280 PetscFunctionBegin; 1281 PetscValidHeaderSpecific(dm,DM_CLASSID,1); 1282 if (ctype == IS_COLORING_GHOSTED) SETERRQ(PetscObjectComm((PetscObject)dm),PETSC_ERR_SUP,"Only global coloring supported"); 1283 else if (ctype == IS_COLORING_GLOBAL) { 1284 n = com->n; 1285 } else SETERRQ(PetscObjectComm((PetscObject)dm),PETSC_ERR_ARG_OUTOFRANGE,"Unknown ISColoringType"); 1286 ierr = PetscMalloc(n*sizeof(ISColoringValue),&colors);CHKERRQ(ierr); /* freed in ISColoringDestroy() */ 1287 1288 ierr = PetscOptionsGetBool(NULL,"-dmcomposite_dense_jacobian",&dense,NULL);CHKERRQ(ierr); 1289 if (dense) { 1290 for (i=0; i<n; i++) { 1291 colors[i] = (ISColoringValue)(com->rstart + i); 1292 } 1293 maxcol = com->N; 1294 } else { 1295 struct DMCompositeLink *next = com->next; 1296 PetscMPIInt rank; 1297 1298 ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)dm),&rank);CHKERRQ(ierr); 1299 cnt = 0; 1300 while (next) { 1301 ISColoring lcoloring; 1302 1303 ierr = DMCreateColoring(next->dm,IS_COLORING_GLOBAL,mtype,&lcoloring);CHKERRQ(ierr); 1304 for (i=0; i<lcoloring->N; i++) { 1305 colors[cnt++] = maxcol + lcoloring->colors[i]; 1306 } 1307 maxcol += lcoloring->n; 1308 ierr = ISColoringDestroy(&lcoloring);CHKERRQ(ierr); 1309 next = next->next; 1310 } 1311 } 1312 ierr = ISColoringCreate(PetscObjectComm((PetscObject)dm),maxcol,n,colors,coloring);CHKERRQ(ierr); 1313 PetscFunctionReturn(0); 1314 } 1315 1316 #undef __FUNCT__ 1317 #define __FUNCT__ "DMGlobalToLocalBegin_Composite" 1318 PetscErrorCode DMGlobalToLocalBegin_Composite(DM dm,Vec gvec,InsertMode mode,Vec lvec) 1319 { 1320 PetscErrorCode ierr; 1321 struct DMCompositeLink *next; 1322 PetscInt cnt = 3; 1323 PetscMPIInt rank; 1324 PetscScalar *garray,*larray; 1325 DM_Composite *com = (DM_Composite*)dm->data; 1326 1327 PetscFunctionBegin; 1328 PetscValidHeaderSpecific(dm,DM_CLASSID,1); 1329 PetscValidHeaderSpecific(gvec,VEC_CLASSID,2); 1330 next = com->next; 1331 if (!com->setup) { 1332 ierr = DMSetUp(dm);CHKERRQ(ierr); 1333 } 1334 ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)dm),&rank);CHKERRQ(ierr); 1335 ierr = VecGetArray(gvec,&garray);CHKERRQ(ierr); 1336 ierr = VecGetArray(lvec,&larray);CHKERRQ(ierr); 1337 1338 /* loop over packed objects, handling one at at time */ 1339 while (next) { 1340 Vec local,global; 1341 PetscInt N; 1342 1343 ierr = DMGetGlobalVector(next->dm,&global);CHKERRQ(ierr); 1344 ierr = VecGetLocalSize(global,&N);CHKERRQ(ierr); 1345 ierr = VecPlaceArray(global,garray);CHKERRQ(ierr); 1346 ierr = DMGetLocalVector(next->dm,&local);CHKERRQ(ierr); 1347 ierr = VecPlaceArray(local,larray);CHKERRQ(ierr); 1348 ierr = DMGlobalToLocalBegin(next->dm,global,mode,local);CHKERRQ(ierr); 1349 ierr = DMGlobalToLocalEnd(next->dm,global,mode,local);CHKERRQ(ierr); 1350 ierr = VecResetArray(global);CHKERRQ(ierr); 1351 ierr = VecResetArray(local);CHKERRQ(ierr); 1352 ierr = DMRestoreGlobalVector(next->dm,&global);CHKERRQ(ierr); 1353 ierr = DMRestoreGlobalVector(next->dm,&local);CHKERRQ(ierr); 1354 cnt++; 1355 larray += next->nlocal; 1356 next = next->next; 1357 } 1358 1359 ierr = VecRestoreArray(gvec,NULL);CHKERRQ(ierr); 1360 ierr = VecRestoreArray(lvec,NULL);CHKERRQ(ierr); 1361 PetscFunctionReturn(0); 1362 } 1363 1364 #undef __FUNCT__ 1365 #define __FUNCT__ "DMGlobalToLocalEnd_Composite" 1366 PetscErrorCode DMGlobalToLocalEnd_Composite(DM dm,Vec gvec,InsertMode mode,Vec lvec) 1367 { 1368 PetscFunctionBegin; 1369 PetscFunctionReturn(0); 1370 } 1371 1372 /*MC 1373 DMCOMPOSITE = "composite" - A DM object that is used to manage data for a collection of DMs 1374 1375 1376 1377 Level: intermediate 1378 1379 .seealso: DMType, DMCOMPOSITE, DMDACreate(), DMCreate(), DMSetType(), DMCompositeCreate() 1380 M*/ 1381 1382 1383 #undef __FUNCT__ 1384 #define __FUNCT__ "DMCreate_Composite" 1385 PETSC_EXTERN PetscErrorCode DMCreate_Composite(DM p) 1386 { 1387 PetscErrorCode ierr; 1388 DM_Composite *com; 1389 1390 PetscFunctionBegin; 1391 ierr = PetscNewLog(p,DM_Composite,&com);CHKERRQ(ierr); 1392 p->data = com; 1393 ierr = PetscObjectChangeTypeName((PetscObject)p,"DMComposite");CHKERRQ(ierr); 1394 com->n = 0; 1395 com->next = NULL; 1396 com->nDM = 0; 1397 1398 p->ops->createglobalvector = DMCreateGlobalVector_Composite; 1399 p->ops->createlocalvector = DMCreateLocalVector_Composite; 1400 p->ops->getlocaltoglobalmapping = DMGetLocalToGlobalMapping_Composite; 1401 p->ops->getlocaltoglobalmappingblock = 0; 1402 p->ops->createfieldis = DMCreateFieldIS_Composite; 1403 p->ops->createfielddecomposition = DMCreateFieldDecomposition_Composite; 1404 p->ops->refine = DMRefine_Composite; 1405 p->ops->coarsen = DMCoarsen_Composite; 1406 p->ops->createinterpolation = DMCreateInterpolation_Composite; 1407 p->ops->creatematrix = DMCreateMatrix_Composite; 1408 p->ops->getcoloring = DMCreateColoring_Composite; 1409 p->ops->globaltolocalbegin = DMGlobalToLocalBegin_Composite; 1410 p->ops->globaltolocalend = DMGlobalToLocalEnd_Composite; 1411 p->ops->destroy = DMDestroy_Composite; 1412 p->ops->view = DMView_Composite; 1413 p->ops->setup = DMSetUp_Composite; 1414 PetscFunctionReturn(0); 1415 } 1416 1417 #undef __FUNCT__ 1418 #define __FUNCT__ "DMCompositeCreate" 1419 /*@C 1420 DMCompositeCreate - Creates a vector packer, used to generate "composite" 1421 vectors made up of several subvectors. 1422 1423 Collective on MPI_Comm 1424 1425 Input Parameter: 1426 . comm - the processors that will share the global vector 1427 1428 Output Parameters: 1429 . packer - the packer object 1430 1431 Level: advanced 1432 1433 .seealso DMDestroy(), DMCompositeAddDM(), DMCompositeScatter(), 1434 DMCompositeGather(), DMCreateGlobalVector(), DMCompositeGetISLocalToGlobalMappings(), DMCompositeGetAccess() 1435 DMCompositeGetLocalVectors(), DMCompositeRestoreLocalVectors(), DMCompositeGetEntries() 1436 1437 @*/ 1438 PetscErrorCode DMCompositeCreate(MPI_Comm comm,DM *packer) 1439 { 1440 PetscErrorCode ierr; 1441 1442 PetscFunctionBegin; 1443 PetscValidPointer(packer,2); 1444 ierr = DMCreate(comm,packer);CHKERRQ(ierr); 1445 ierr = DMSetType(*packer,DMCOMPOSITE);CHKERRQ(ierr); 1446 PetscFunctionReturn(0); 1447 } 1448