1 2 #include <../src/dm/impls/composite/packimpl.h> /*I "petscdmcomposite.h" I*/ 3 4 #undef __FUNCT__ 5 #define __FUNCT__ "DMCompositeSetCoupling" 6 /*@C 7 DMCompositeSetCoupling - Sets user provided routines that compute the coupling between the 8 seperate components (DMs) in a DMto build the correct matrix nonzero structure. 9 10 11 Logically Collective on MPI_Comm 12 13 Input Parameter: 14 + dm - the composite object 15 - formcouplelocations - routine to set the nonzero locations in the matrix 16 17 Level: advanced 18 19 Notes: See DMSetApplicationContext() and DMGetApplicationContext() for how to get user information into 20 this routine 21 22 @*/ 23 PetscErrorCode DMCompositeSetCoupling(DM dm,PetscErrorCode (*FormCoupleLocations)(DM,Mat,PetscInt*,PetscInt*,PetscInt,PetscInt,PetscInt,PetscInt)) 24 { 25 DM_Composite *com = (DM_Composite*)dm->data; 26 27 PetscFunctionBegin; 28 com->FormCoupleLocations = FormCoupleLocations; 29 PetscFunctionReturn(0); 30 } 31 32 #undef __FUNCT__ 33 #define __FUNCT__ "DMDestroy_Composite" 34 PetscErrorCode DMDestroy_Composite(DM dm) 35 { 36 PetscErrorCode ierr; 37 struct DMCompositeLink *next, *prev; 38 DM_Composite *com = (DM_Composite*)dm->data; 39 40 PetscFunctionBegin; 41 next = com->next; 42 while (next) { 43 prev = next; 44 next = next->next; 45 ierr = DMDestroy(&prev->dm);CHKERRQ(ierr); 46 ierr = PetscFree(prev->grstarts);CHKERRQ(ierr); 47 ierr = PetscFree(prev);CHKERRQ(ierr); 48 } 49 /* This was originally freed in DMDestroy(), but that prevents reference counting of backend objects */ 50 ierr = PetscFree(com);CHKERRQ(ierr); 51 PetscFunctionReturn(0); 52 } 53 54 #undef __FUNCT__ 55 #define __FUNCT__ "DMView_Composite" 56 PetscErrorCode DMView_Composite(DM dm,PetscViewer v) 57 { 58 PetscErrorCode ierr; 59 PetscBool iascii; 60 DM_Composite *com = (DM_Composite*)dm->data; 61 62 PetscFunctionBegin; 63 ierr = PetscObjectTypeCompare((PetscObject)v,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr); 64 if (iascii) { 65 struct DMCompositeLink *lnk = com->next; 66 PetscInt i; 67 68 ierr = PetscViewerASCIIPrintf(v,"DM (%s)\n",((PetscObject)dm)->prefix ? ((PetscObject)dm)->prefix : "no prefix");CHKERRQ(ierr); 69 ierr = PetscViewerASCIIPrintf(v," contains %D DMs\n",com->nDM);CHKERRQ(ierr); 70 ierr = PetscViewerASCIIPushTab(v);CHKERRQ(ierr); 71 for (i=0; lnk; lnk=lnk->next,i++) { 72 ierr = PetscViewerASCIIPrintf(v,"Link %D: DM of type %s\n",i,((PetscObject)lnk->dm)->type_name);CHKERRQ(ierr); 73 ierr = PetscViewerASCIIPushTab(v);CHKERRQ(ierr); 74 ierr = DMView(lnk->dm,v);CHKERRQ(ierr); 75 ierr = PetscViewerASCIIPopTab(v);CHKERRQ(ierr); 76 } 77 ierr = PetscViewerASCIIPopTab(v);CHKERRQ(ierr); 78 } 79 PetscFunctionReturn(0); 80 } 81 82 /* --------------------------------------------------------------------------------------*/ 83 #undef __FUNCT__ 84 #define __FUNCT__ "DMSetUp_Composite" 85 PetscErrorCode DMSetUp_Composite(DM dm) 86 { 87 PetscErrorCode ierr; 88 PetscInt nprev = 0; 89 PetscMPIInt rank,size; 90 DM_Composite *com = (DM_Composite*)dm->data; 91 struct DMCompositeLink *next = com->next; 92 PetscLayout map; 93 94 PetscFunctionBegin; 95 if (com->setup) SETERRQ(PetscObjectComm((PetscObject)dm),PETSC_ERR_ARG_WRONGSTATE,"Packer has already been setup"); 96 ierr = PetscLayoutCreate(PetscObjectComm((PetscObject)dm),&map);CHKERRQ(ierr); 97 ierr = PetscLayoutSetLocalSize(map,com->n);CHKERRQ(ierr); 98 ierr = PetscLayoutSetSize(map,PETSC_DETERMINE);CHKERRQ(ierr); 99 ierr = PetscLayoutSetBlockSize(map,1);CHKERRQ(ierr); 100 ierr = PetscLayoutSetUp(map);CHKERRQ(ierr); 101 ierr = PetscLayoutGetSize(map,&com->N);CHKERRQ(ierr); 102 ierr = PetscLayoutGetRange(map,&com->rstart,NULL);CHKERRQ(ierr); 103 ierr = PetscLayoutDestroy(&map);CHKERRQ(ierr); 104 105 /* now set the rstart for each linked vector */ 106 ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)dm),&rank);CHKERRQ(ierr); 107 ierr = MPI_Comm_size(PetscObjectComm((PetscObject)dm),&size);CHKERRQ(ierr); 108 while (next) { 109 next->rstart = nprev; 110 nprev += next->n; 111 next->grstart = com->rstart + next->rstart; 112 ierr = PetscMalloc1(size,&next->grstarts);CHKERRQ(ierr); 113 ierr = MPI_Allgather(&next->grstart,1,MPIU_INT,next->grstarts,1,MPIU_INT,PetscObjectComm((PetscObject)dm));CHKERRQ(ierr); 114 next = next->next; 115 } 116 com->setup = PETSC_TRUE; 117 PetscFunctionReturn(0); 118 } 119 120 /* ----------------------------------------------------------------------------------*/ 121 122 #undef __FUNCT__ 123 #define __FUNCT__ "DMCompositeGetNumberDM" 124 /*@ 125 DMCompositeGetNumberDM - Get's the number of DM objects in the DMComposite 126 representation. 127 128 Not Collective 129 130 Input Parameter: 131 . dm - the packer object 132 133 Output Parameter: 134 . nDM - the number of DMs 135 136 Level: beginner 137 138 @*/ 139 PetscErrorCode DMCompositeGetNumberDM(DM dm,PetscInt *nDM) 140 { 141 DM_Composite *com = (DM_Composite*)dm->data; 142 143 PetscFunctionBegin; 144 PetscValidHeaderSpecific(dm,DM_CLASSID,1); 145 *nDM = com->nDM; 146 PetscFunctionReturn(0); 147 } 148 149 150 #undef __FUNCT__ 151 #define __FUNCT__ "DMCompositeGetAccess" 152 /*@C 153 DMCompositeGetAccess - Allows one to access the individual packed vectors in their global 154 representation. 155 156 Collective on DMComposite 157 158 Input Parameters: 159 + dm - the packer object 160 - gvec - the global vector 161 162 Output Parameters: 163 . Vec* ... - the packed parallel vectors, NULL for those that are not needed 164 165 Notes: Use DMCompositeRestoreAccess() to return the vectors when you no longer need them 166 167 Fortran Notes: 168 169 Fortran callers must use numbered versions of this routine, e.g., DMCompositeGetAccess4(dm,gvec,vec1,vec2,vec3,vec4) 170 or use the alternative interface DMCompositeGetAccessArray(). 171 172 Level: advanced 173 174 .seealso: DMCompositeGetEntries(), DMCompositeScatter() 175 @*/ 176 PetscErrorCode DMCompositeGetAccess(DM dm,Vec gvec,...) 177 { 178 va_list Argp; 179 PetscErrorCode ierr; 180 struct DMCompositeLink *next; 181 DM_Composite *com = (DM_Composite*)dm->data; 182 183 PetscFunctionBegin; 184 PetscValidHeaderSpecific(dm,DM_CLASSID,1); 185 PetscValidHeaderSpecific(gvec,VEC_CLASSID,2); 186 next = com->next; 187 if (!com->setup) { 188 ierr = DMSetUp(dm);CHKERRQ(ierr); 189 } 190 191 /* loop over packed objects, handling one at at time */ 192 va_start(Argp,gvec); 193 while (next) { 194 Vec *vec; 195 vec = va_arg(Argp, Vec*); 196 if (vec) { 197 PetscScalar *array; 198 ierr = DMGetGlobalVector(next->dm,vec);CHKERRQ(ierr); 199 ierr = VecGetArray(gvec,&array);CHKERRQ(ierr); 200 ierr = VecPlaceArray(*vec,array+next->rstart);CHKERRQ(ierr); 201 ierr = VecRestoreArray(gvec,&array);CHKERRQ(ierr); 202 } 203 next = next->next; 204 } 205 va_end(Argp); 206 PetscFunctionReturn(0); 207 } 208 209 #undef __FUNCT__ 210 #define __FUNCT__ "DMCompositeGetAccessArray" 211 /*@C 212 DMCompositeGetAccessArray - Allows one to access the individual packed vectors in their global 213 representation. 214 215 Collective on DMComposite 216 217 Input Parameters: 218 + dm - the packer object 219 . pvec - packed vector 220 . nwanted - number of vectors wanted 221 - wanted - sorted array of vectors wanted, or NULL to get all vectors 222 223 Output Parameters: 224 . vecs - array of requested global vectors (must be allocated) 225 226 Notes: Use DMCompositeRestoreAccessArray() to return the vectors when you no longer need them 227 228 Level: advanced 229 230 .seealso: DMCompositeGetAccess(), DMCompositeGetEntries(), DMCompositeScatter(), DMCompositeGather() 231 @*/ 232 PetscErrorCode DMCompositeGetAccessArray(DM dm,Vec pvec,PetscInt nwanted,const PetscInt *wanted,Vec *vecs) 233 { 234 PetscErrorCode ierr; 235 struct DMCompositeLink *link; 236 PetscInt i,wnum; 237 DM_Composite *com = (DM_Composite*)dm->data; 238 239 PetscFunctionBegin; 240 PetscValidHeaderSpecific(dm,DM_CLASSID,1); 241 PetscValidHeaderSpecific(pvec,VEC_CLASSID,2); 242 if (!com->setup) { 243 ierr = DMSetUp(dm);CHKERRQ(ierr); 244 } 245 246 for (i=0,wnum=0,link=com->next; link && wnum<nwanted; i++,link=link->next) { 247 if (!wanted || i == wanted[wnum]) { 248 PetscScalar *array; 249 Vec v; 250 ierr = DMGetGlobalVector(link->dm,&v);CHKERRQ(ierr); 251 ierr = VecGetArray(pvec,&array);CHKERRQ(ierr); 252 ierr = VecPlaceArray(v,array+link->rstart);CHKERRQ(ierr); 253 ierr = VecRestoreArray(pvec,&array);CHKERRQ(ierr); 254 vecs[wnum++] = v; 255 } 256 } 257 PetscFunctionReturn(0); 258 } 259 260 #undef __FUNCT__ 261 #define __FUNCT__ "DMCompositeRestoreAccess" 262 /*@C 263 DMCompositeRestoreAccess - Returns the vectors obtained with DMCompositeGetAccess() 264 representation. 265 266 Collective on DMComposite 267 268 Input Parameters: 269 + dm - the packer object 270 . gvec - the global vector 271 - Vec* ... - the individual parallel vectors, NULL for those that are not needed 272 273 Level: advanced 274 275 .seealso DMCompositeAddDM(), DMCreateGlobalVector(), 276 DMCompositeGather(), DMCompositeCreate(), DMCompositeGetISLocalToGlobalMappings(), DMCompositeScatter(), 277 DMCompositeRestoreAccess(), DMCompositeGetAccess() 278 279 @*/ 280 PetscErrorCode DMCompositeRestoreAccess(DM dm,Vec gvec,...) 281 { 282 va_list Argp; 283 PetscErrorCode ierr; 284 struct DMCompositeLink *next; 285 DM_Composite *com = (DM_Composite*)dm->data; 286 287 PetscFunctionBegin; 288 PetscValidHeaderSpecific(dm,DM_CLASSID,1); 289 PetscValidHeaderSpecific(gvec,VEC_CLASSID,2); 290 next = com->next; 291 if (!com->setup) { 292 ierr = DMSetUp(dm);CHKERRQ(ierr); 293 } 294 295 /* loop over packed objects, handling one at at time */ 296 va_start(Argp,gvec); 297 while (next) { 298 Vec *vec; 299 vec = va_arg(Argp, Vec*); 300 if (vec) { 301 ierr = VecResetArray(*vec);CHKERRQ(ierr); 302 ierr = DMRestoreGlobalVector(next->dm,vec);CHKERRQ(ierr); 303 } 304 next = next->next; 305 } 306 va_end(Argp); 307 PetscFunctionReturn(0); 308 } 309 310 #undef __FUNCT__ 311 #define __FUNCT__ "DMCompositeRestoreAccessArray" 312 /*@C 313 DMCompositeRestoreAccessArray - Returns the vectors obtained with DMCompositeGetAccessArray() 314 315 Collective on DMComposite 316 317 Input Parameters: 318 + dm - the packer object 319 . pvec - packed vector 320 . nwanted - number of vectors wanted 321 . wanted - sorted array of vectors wanted, or NULL to get all vectors 322 - vecs - array of global vectors to return 323 324 Level: advanced 325 326 .seealso: DMCompositeRestoreAccess(), DMCompositeRestoreEntries(), DMCompositeScatter(), DMCompositeGather() 327 @*/ 328 PetscErrorCode DMCompositeRestoreAccessArray(DM dm,Vec pvec,PetscInt nwanted,const PetscInt *wanted,Vec *vecs) 329 { 330 PetscErrorCode ierr; 331 struct DMCompositeLink *link; 332 PetscInt i,wnum; 333 DM_Composite *com = (DM_Composite*)dm->data; 334 335 PetscFunctionBegin; 336 PetscValidHeaderSpecific(dm,DM_CLASSID,1); 337 PetscValidHeaderSpecific(pvec,VEC_CLASSID,2); 338 if (!com->setup) { 339 ierr = DMSetUp(dm);CHKERRQ(ierr); 340 } 341 342 for (i=0,wnum=0,link=com->next; link && wnum<nwanted; i++,link=link->next) { 343 if (!wanted || i == wanted[wnum]) { 344 ierr = VecResetArray(vecs[wnum]);CHKERRQ(ierr); 345 ierr = DMRestoreGlobalVector(link->dm,&vecs[wnum]);CHKERRQ(ierr); 346 wnum++; 347 } 348 } 349 PetscFunctionReturn(0); 350 } 351 352 #undef __FUNCT__ 353 #define __FUNCT__ "DMCompositeScatter" 354 /*@C 355 DMCompositeScatter - Scatters from a global packed vector into its individual local vectors 356 357 Collective on DMComposite 358 359 Input Parameters: 360 + dm - the packer object 361 . gvec - the global vector 362 - Vec ... - the individual sequential vectors, NULL for those that are not needed 363 364 Level: advanced 365 366 Notes: 367 DMCompositeScatterArray() is a non-variadic alternative that is often more convenient for library callers and is 368 accessible from Fortran. 369 370 .seealso DMDestroy(), DMCompositeAddDM(), DMCreateGlobalVector(), 371 DMCompositeGather(), DMCompositeCreate(), DMCompositeGetISLocalToGlobalMappings(), DMCompositeGetAccess(), 372 DMCompositeGetLocalVectors(), DMCompositeRestoreLocalVectors(), DMCompositeGetEntries() 373 DMCompositeScatterArray() 374 375 @*/ 376 PetscErrorCode DMCompositeScatter(DM dm,Vec gvec,...) 377 { 378 va_list Argp; 379 PetscErrorCode ierr; 380 struct DMCompositeLink *next; 381 PetscInt cnt; 382 DM_Composite *com = (DM_Composite*)dm->data; 383 384 PetscFunctionBegin; 385 PetscValidHeaderSpecific(dm,DM_CLASSID,1); 386 PetscValidHeaderSpecific(gvec,VEC_CLASSID,2); 387 if (!com->setup) { 388 ierr = DMSetUp(dm);CHKERRQ(ierr); 389 } 390 391 /* loop over packed objects, handling one at at time */ 392 va_start(Argp,gvec); 393 for (cnt=3,next=com->next; next; cnt++,next=next->next) { 394 Vec local; 395 local = va_arg(Argp, Vec); 396 if (local) { 397 Vec global; 398 PetscScalar *array; 399 PetscValidHeaderSpecific(local,VEC_CLASSID,cnt); 400 ierr = DMGetGlobalVector(next->dm,&global);CHKERRQ(ierr); 401 ierr = VecGetArray(gvec,&array);CHKERRQ(ierr); 402 ierr = VecPlaceArray(global,array+next->rstart);CHKERRQ(ierr); 403 ierr = DMGlobalToLocalBegin(next->dm,global,INSERT_VALUES,local);CHKERRQ(ierr); 404 ierr = DMGlobalToLocalEnd(next->dm,global,INSERT_VALUES,local);CHKERRQ(ierr); 405 ierr = VecRestoreArray(gvec,&array);CHKERRQ(ierr); 406 ierr = VecResetArray(global);CHKERRQ(ierr); 407 ierr = DMRestoreGlobalVector(next->dm,&global);CHKERRQ(ierr); 408 } 409 } 410 va_end(Argp); 411 PetscFunctionReturn(0); 412 } 413 414 #undef __FUNCT__ 415 #define __FUNCT__ "DMCompositeScatterArray" 416 /*@ 417 DMCompositeScatterArray - Scatters from a global packed vector into its individual local vectors 418 419 Collective on DMComposite 420 421 Input Parameters: 422 + dm - the packer object 423 . gvec - the global vector 424 . lvecs - array of local vectors, NULL for any that are not needed 425 426 Level: advanced 427 428 Note: 429 This is a non-variadic alternative to DMCompositeScatterArray() 430 431 .seealso DMDestroy(), DMCompositeAddDM(), DMCreateGlobalVector() 432 DMCompositeGather(), DMCompositeCreate(), DMCompositeGetISLocalToGlobalMappings(), DMCompositeGetAccess(), 433 DMCompositeGetLocalVectors(), DMCompositeRestoreLocalVectors(), DMCompositeGetEntries() 434 435 @*/ 436 PetscErrorCode DMCompositeScatterArray(DM dm,Vec gvec,Vec *lvecs) 437 { 438 PetscErrorCode ierr; 439 struct DMCompositeLink *next; 440 PetscInt i; 441 DM_Composite *com = (DM_Composite*)dm->data; 442 443 PetscFunctionBegin; 444 PetscValidHeaderSpecific(dm,DM_CLASSID,1); 445 PetscValidHeaderSpecific(gvec,VEC_CLASSID,2); 446 if (!com->setup) { 447 ierr = DMSetUp(dm);CHKERRQ(ierr); 448 } 449 450 /* loop over packed objects, handling one at at time */ 451 for (i=0,next=com->next; next; next=next->next,i++) { 452 if (lvecs[i]) { 453 Vec global; 454 PetscScalar *array; 455 PetscValidHeaderSpecific(lvecs[i],VEC_CLASSID,3); 456 ierr = DMGetGlobalVector(next->dm,&global);CHKERRQ(ierr); 457 ierr = VecGetArray(gvec,&array);CHKERRQ(ierr); 458 ierr = VecPlaceArray(global,array+next->rstart);CHKERRQ(ierr); 459 ierr = DMGlobalToLocalBegin(next->dm,global,INSERT_VALUES,lvecs[i]);CHKERRQ(ierr); 460 ierr = DMGlobalToLocalEnd(next->dm,global,INSERT_VALUES,lvecs[i]);CHKERRQ(ierr); 461 ierr = VecRestoreArray(gvec,&array);CHKERRQ(ierr); 462 ierr = VecResetArray(global);CHKERRQ(ierr); 463 ierr = DMRestoreGlobalVector(next->dm,&global);CHKERRQ(ierr); 464 } 465 } 466 PetscFunctionReturn(0); 467 } 468 469 #undef __FUNCT__ 470 #define __FUNCT__ "DMCompositeGather" 471 /*@C 472 DMCompositeGather - Gathers into a global packed vector from its individual local vectors 473 474 Collective on DMComposite 475 476 Input Parameter: 477 + dm - the packer object 478 . gvec - the global vector 479 - Vec ... - the individual sequential vectors, NULL for any that are not needed 480 481 Level: advanced 482 483 .seealso DMDestroy(), DMCompositeAddDM(), DMCreateGlobalVector(), 484 DMCompositeScatter(), DMCompositeCreate(), DMCompositeGetISLocalToGlobalMappings(), DMCompositeGetAccess(), 485 DMCompositeGetLocalVectors(), DMCompositeRestoreLocalVectors(), DMCompositeGetEntries() 486 487 @*/ 488 PetscErrorCode DMCompositeGather(DM dm,Vec gvec,InsertMode imode,...) 489 { 490 va_list Argp; 491 PetscErrorCode ierr; 492 struct DMCompositeLink *next; 493 DM_Composite *com = (DM_Composite*)dm->data; 494 PetscInt cnt; 495 496 PetscFunctionBegin; 497 PetscValidHeaderSpecific(dm,DM_CLASSID,1); 498 PetscValidHeaderSpecific(gvec,VEC_CLASSID,2); 499 if (!com->setup) { 500 ierr = DMSetUp(dm);CHKERRQ(ierr); 501 } 502 503 /* loop over packed objects, handling one at at time */ 504 va_start(Argp,imode); 505 for (cnt=3,next=com->next; next; cnt++,next=next->next) { 506 Vec local; 507 local = va_arg(Argp, Vec); 508 if (local) { 509 PetscScalar *array; 510 Vec global; 511 PetscValidHeaderSpecific(local,VEC_CLASSID,cnt); 512 ierr = DMGetGlobalVector(next->dm,&global);CHKERRQ(ierr); 513 ierr = VecGetArray(gvec,&array);CHKERRQ(ierr); 514 ierr = VecPlaceArray(global,array+next->rstart);CHKERRQ(ierr); 515 ierr = DMLocalToGlobalBegin(next->dm,local,imode,global);CHKERRQ(ierr); 516 ierr = DMLocalToGlobalEnd(next->dm,local,imode,global);CHKERRQ(ierr); 517 ierr = VecRestoreArray(gvec,&array);CHKERRQ(ierr); 518 ierr = VecResetArray(global);CHKERRQ(ierr); 519 ierr = DMRestoreGlobalVector(next->dm,&global);CHKERRQ(ierr); 520 } 521 } 522 va_end(Argp); 523 PetscFunctionReturn(0); 524 } 525 526 #undef __FUNCT__ 527 #define __FUNCT__ "DMCompositeGatherArray" 528 /*@ 529 DMCompositeGatherArray - Gathers into a global packed vector from its individual local vectors 530 531 Collective on DMComposite 532 533 Input Parameter: 534 + dm - the packer object 535 . gvec - the global vector 536 - lvecs - the individual sequential vectors, NULL for any that are not needed 537 538 Level: advanced 539 540 Notes: 541 This is a non-variadic alternative to DMCompositeGather(). 542 543 .seealso DMDestroy(), DMCompositeAddDM(), DMCreateGlobalVector(), 544 DMCompositeScatter(), DMCompositeCreate(), DMCompositeGetISLocalToGlobalMappings(), DMCompositeGetAccess(), 545 DMCompositeGetLocalVectors(), DMCompositeRestoreLocalVectors(), DMCompositeGetEntries(), 546 @*/ 547 PetscErrorCode DMCompositeGatherArray(DM dm,Vec gvec,InsertMode imode,Vec *lvecs) 548 { 549 PetscErrorCode ierr; 550 struct DMCompositeLink *next; 551 DM_Composite *com = (DM_Composite*)dm->data; 552 PetscInt i; 553 554 PetscFunctionBegin; 555 PetscValidHeaderSpecific(dm,DM_CLASSID,1); 556 PetscValidHeaderSpecific(gvec,VEC_CLASSID,2); 557 if (!com->setup) { 558 ierr = DMSetUp(dm);CHKERRQ(ierr); 559 } 560 561 /* loop over packed objects, handling one at at time */ 562 for (next=com->next,i=0; next; next=next->next,i++) { 563 if (lvecs[i]) { 564 PetscScalar *array; 565 Vec global; 566 PetscValidHeaderSpecific(lvecs[i],VEC_CLASSID,3); 567 ierr = DMGetGlobalVector(next->dm,&global);CHKERRQ(ierr); 568 ierr = VecGetArray(gvec,&array);CHKERRQ(ierr); 569 ierr = VecPlaceArray(global,array+next->rstart);CHKERRQ(ierr); 570 ierr = DMLocalToGlobalBegin(next->dm,lvecs[i],imode,global);CHKERRQ(ierr); 571 ierr = DMLocalToGlobalEnd(next->dm,lvecs[i],imode,global);CHKERRQ(ierr); 572 ierr = VecRestoreArray(gvec,&array);CHKERRQ(ierr); 573 ierr = VecResetArray(global);CHKERRQ(ierr); 574 ierr = DMRestoreGlobalVector(next->dm,&global);CHKERRQ(ierr); 575 } 576 } 577 PetscFunctionReturn(0); 578 } 579 580 #undef __FUNCT__ 581 #define __FUNCT__ "DMCompositeAddDM" 582 /*@C 583 DMCompositeAddDM - adds a DM vector to a DMComposite 584 585 Collective on DMComposite 586 587 Input Parameter: 588 + dm - the packer object 589 - dm - the DM object, if the DM is a da you will need to caste it with a (DM) 590 591 Level: advanced 592 593 .seealso DMDestroy(), DMCompositeGather(), DMCompositeAddDM(), DMCreateGlobalVector(), 594 DMCompositeScatter(), DMCompositeCreate(), DMCompositeGetISLocalToGlobalMappings(), DMCompositeGetAccess(), 595 DMCompositeGetLocalVectors(), DMCompositeRestoreLocalVectors(), DMCompositeGetEntries() 596 597 @*/ 598 PetscErrorCode DMCompositeAddDM(DM dmc,DM dm) 599 { 600 PetscErrorCode ierr; 601 PetscInt n,nlocal; 602 struct DMCompositeLink *mine,*next; 603 Vec global,local; 604 DM_Composite *com = (DM_Composite*)dmc->data; 605 606 PetscFunctionBegin; 607 PetscValidHeaderSpecific(dmc,DM_CLASSID,1); 608 PetscValidHeaderSpecific(dm,DM_CLASSID,2); 609 next = com->next; 610 if (com->setup) SETERRQ(PetscObjectComm((PetscObject)dmc),PETSC_ERR_ARG_WRONGSTATE,"Cannot add a DM once you have used the DMComposite"); 611 612 /* create new link */ 613 ierr = PetscNew(&mine);CHKERRQ(ierr); 614 ierr = PetscObjectReference((PetscObject)dm);CHKERRQ(ierr); 615 ierr = DMGetGlobalVector(dm,&global);CHKERRQ(ierr); 616 ierr = VecGetLocalSize(global,&n);CHKERRQ(ierr); 617 ierr = DMRestoreGlobalVector(dm,&global);CHKERRQ(ierr); 618 ierr = DMGetLocalVector(dm,&local);CHKERRQ(ierr); 619 ierr = VecGetSize(local,&nlocal);CHKERRQ(ierr); 620 ierr = DMRestoreLocalVector(dm,&local);CHKERRQ(ierr); 621 622 mine->n = n; 623 mine->nlocal = nlocal; 624 mine->dm = dm; 625 mine->next = NULL; 626 com->n += n; 627 628 /* add to end of list */ 629 if (!next) com->next = mine; 630 else { 631 while (next->next) next = next->next; 632 next->next = mine; 633 } 634 com->nDM++; 635 com->nmine++; 636 PetscFunctionReturn(0); 637 } 638 639 #include <petscdraw.h> 640 PETSC_EXTERN PetscErrorCode VecView_MPI(Vec,PetscViewer); 641 #undef __FUNCT__ 642 #define __FUNCT__ "VecView_DMComposite" 643 PetscErrorCode VecView_DMComposite(Vec gvec,PetscViewer viewer) 644 { 645 DM dm; 646 PetscErrorCode ierr; 647 struct DMCompositeLink *next; 648 PetscBool isdraw; 649 DM_Composite *com; 650 651 PetscFunctionBegin; 652 ierr = VecGetDM(gvec, &dm);CHKERRQ(ierr); 653 if (!dm) SETERRQ(PetscObjectComm((PetscObject)gvec),PETSC_ERR_ARG_WRONG,"Vector not generated from a DMComposite"); 654 com = (DM_Composite*)dm->data; 655 next = com->next; 656 657 ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr); 658 if (!isdraw) { 659 /* do I really want to call this? */ 660 ierr = VecView_MPI(gvec,viewer);CHKERRQ(ierr); 661 } else { 662 PetscInt cnt = 0; 663 664 /* loop over packed objects, handling one at at time */ 665 while (next) { 666 Vec vec; 667 PetscScalar *array; 668 PetscInt bs; 669 670 /* Should use VecGetSubVector() eventually, but would need to forward the DM for that to work */ 671 ierr = DMGetGlobalVector(next->dm,&vec);CHKERRQ(ierr); 672 ierr = VecGetArray(gvec,&array);CHKERRQ(ierr); 673 ierr = VecPlaceArray(vec,array+next->rstart);CHKERRQ(ierr); 674 ierr = VecRestoreArray(gvec,&array);CHKERRQ(ierr); 675 ierr = VecView(vec,viewer);CHKERRQ(ierr); 676 ierr = VecGetBlockSize(vec,&bs);CHKERRQ(ierr); 677 ierr = VecResetArray(vec);CHKERRQ(ierr); 678 ierr = DMRestoreGlobalVector(next->dm,&vec);CHKERRQ(ierr); 679 ierr = PetscViewerDrawBaseAdd(viewer,bs);CHKERRQ(ierr); 680 cnt += bs; 681 next = next->next; 682 } 683 ierr = PetscViewerDrawBaseAdd(viewer,-cnt);CHKERRQ(ierr); 684 } 685 PetscFunctionReturn(0); 686 } 687 688 #undef __FUNCT__ 689 #define __FUNCT__ "DMCreateGlobalVector_Composite" 690 PetscErrorCode DMCreateGlobalVector_Composite(DM dm,Vec *gvec) 691 { 692 PetscErrorCode ierr; 693 DM_Composite *com = (DM_Composite*)dm->data; 694 695 PetscFunctionBegin; 696 PetscValidHeaderSpecific(dm,DM_CLASSID,1); 697 ierr = DMSetUp(dm);CHKERRQ(ierr); 698 ierr = VecCreateMPI(PetscObjectComm((PetscObject)dm),com->n,com->N,gvec);CHKERRQ(ierr); 699 ierr = VecSetDM(*gvec, dm);CHKERRQ(ierr); 700 ierr = VecSetOperation(*gvec,VECOP_VIEW,(void (*)(void))VecView_DMComposite);CHKERRQ(ierr); 701 PetscFunctionReturn(0); 702 } 703 704 #undef __FUNCT__ 705 #define __FUNCT__ "DMCreateLocalVector_Composite" 706 PetscErrorCode DMCreateLocalVector_Composite(DM dm,Vec *lvec) 707 { 708 PetscErrorCode ierr; 709 DM_Composite *com = (DM_Composite*)dm->data; 710 711 PetscFunctionBegin; 712 PetscValidHeaderSpecific(dm,DM_CLASSID,1); 713 if (!com->setup) { 714 ierr = DMSetUp(dm);CHKERRQ(ierr); 715 } 716 ierr = VecCreateSeq(PetscObjectComm((PetscObject)dm),com->nghost,lvec);CHKERRQ(ierr); 717 ierr = VecSetDM(*lvec, dm);CHKERRQ(ierr); 718 PetscFunctionReturn(0); 719 } 720 721 #undef __FUNCT__ 722 #define __FUNCT__ "DMCompositeGetISLocalToGlobalMappings" 723 /*@C 724 DMCompositeGetISLocalToGlobalMappings - gets an ISLocalToGlobalMapping for each DM in the DMComposite, maps to the composite global space 725 726 Collective on DM 727 728 Input Parameter: 729 . dm - the packer object 730 731 Output Parameters: 732 . ltogs - the individual mappings for each packed vector. Note that this includes 733 all the ghost points that individual ghosted DMDA's may have. 734 735 Level: advanced 736 737 Notes: 738 Each entry of ltogs should be destroyed with ISLocalToGlobalMappingDestroy(), the ltogs array should be freed with PetscFree(). 739 740 .seealso DMDestroy(), DMCompositeAddDM(), DMCreateGlobalVector(), 741 DMCompositeGather(), DMCompositeCreate(), DMCompositeGetAccess(), DMCompositeScatter(), 742 DMCompositeGetLocalVectors(), DMCompositeRestoreLocalVectors(),DMCompositeGetEntries() 743 744 @*/ 745 PetscErrorCode DMCompositeGetISLocalToGlobalMappings(DM dm,ISLocalToGlobalMapping **ltogs) 746 { 747 PetscErrorCode ierr; 748 PetscInt i,*idx,n,cnt; 749 struct DMCompositeLink *next; 750 PetscMPIInt rank; 751 DM_Composite *com = (DM_Composite*)dm->data; 752 753 PetscFunctionBegin; 754 PetscValidHeaderSpecific(dm,DM_CLASSID,1); 755 ierr = DMSetUp(dm);CHKERRQ(ierr); 756 ierr = PetscMalloc1((com->nDM),ltogs);CHKERRQ(ierr); 757 next = com->next; 758 ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)dm),&rank);CHKERRQ(ierr); 759 760 /* loop over packed objects, handling one at at time */ 761 cnt = 0; 762 while (next) { 763 ISLocalToGlobalMapping ltog; 764 PetscMPIInt size; 765 const PetscInt *suboff,*indices; 766 Vec global; 767 768 /* Get sub-DM global indices for each local dof */ 769 ierr = DMGetLocalToGlobalMapping(next->dm,<og);CHKERRQ(ierr); 770 ierr = ISLocalToGlobalMappingGetSize(ltog,&n);CHKERRQ(ierr); 771 ierr = ISLocalToGlobalMappingGetIndices(ltog,&indices);CHKERRQ(ierr); 772 ierr = PetscMalloc1(n,&idx);CHKERRQ(ierr); 773 774 /* Get the offsets for the sub-DM global vector */ 775 ierr = DMGetGlobalVector(next->dm,&global);CHKERRQ(ierr); 776 ierr = VecGetOwnershipRanges(global,&suboff);CHKERRQ(ierr); 777 ierr = MPI_Comm_size(PetscObjectComm((PetscObject)global),&size);CHKERRQ(ierr); 778 779 /* Shift the sub-DM definition of the global space to the composite global space */ 780 for (i=0; i<n; i++) { 781 PetscInt subi = indices[i],lo = 0,hi = size,t; 782 /* Binary search to find which rank owns subi */ 783 while (hi-lo > 1) { 784 t = lo + (hi-lo)/2; 785 if (suboff[t] > subi) hi = t; 786 else lo = t; 787 } 788 idx[i] = subi - suboff[lo] + next->grstarts[lo]; 789 } 790 ierr = ISLocalToGlobalMappingRestoreIndices(ltog,&indices);CHKERRQ(ierr); 791 ierr = ISLocalToGlobalMappingCreate(PetscObjectComm((PetscObject)dm),n,idx,PETSC_OWN_POINTER,&(*ltogs)[cnt]);CHKERRQ(ierr); 792 ierr = DMRestoreGlobalVector(next->dm,&global);CHKERRQ(ierr); 793 next = next->next; 794 cnt++; 795 } 796 PetscFunctionReturn(0); 797 } 798 799 #undef __FUNCT__ 800 #define __FUNCT__ "DMCompositeGetLocalISs" 801 /*@C 802 DMCompositeGetLocalISs - Gets index sets for each component of a composite local vector 803 804 Not Collective 805 806 Input Arguments: 807 . dm - composite DM 808 809 Output Arguments: 810 . is - array of serial index sets for each each component of the DMComposite 811 812 Level: intermediate 813 814 Notes: 815 At present, a composite local vector does not normally exist. This function is used to provide index sets for 816 MatGetLocalSubMatrix(). In the future, the scatters for each entry in the DMComposite may be be merged into a single 817 scatter to a composite local vector. The user should not typically need to know which is being done. 818 819 To get the composite global indices at all local points (including ghosts), use DMCompositeGetISLocalToGlobalMappings(). 820 821 To get index sets for pieces of the composite global vector, use DMCompositeGetGlobalISs(). 822 823 Each returned IS should be destroyed with ISDestroy(), the array should be freed with PetscFree(). 824 825 .seealso: DMCompositeGetGlobalISs(), DMCompositeGetISLocalToGlobalMappings(), MatGetLocalSubMatrix(), MatCreateLocalRef() 826 @*/ 827 PetscErrorCode DMCompositeGetLocalISs(DM dm,IS **is) 828 { 829 PetscErrorCode ierr; 830 DM_Composite *com = (DM_Composite*)dm->data; 831 struct DMCompositeLink *link; 832 PetscInt cnt,start; 833 834 PetscFunctionBegin; 835 PetscValidHeaderSpecific(dm,DM_CLASSID,1); 836 PetscValidPointer(is,2); 837 ierr = PetscMalloc1(com->nmine,is);CHKERRQ(ierr); 838 for (cnt=0,start=0,link=com->next; link; start+=link->nlocal,cnt++,link=link->next) { 839 PetscInt bs; 840 ierr = ISCreateStride(PETSC_COMM_SELF,link->nlocal,start,1,&(*is)[cnt]);CHKERRQ(ierr); 841 ierr = DMGetBlockSize(link->dm,&bs);CHKERRQ(ierr); 842 ierr = ISSetBlockSize((*is)[cnt],bs);CHKERRQ(ierr); 843 } 844 PetscFunctionReturn(0); 845 } 846 847 #undef __FUNCT__ 848 #define __FUNCT__ "DMCompositeGetGlobalISs" 849 /*@C 850 DMCompositeGetGlobalISs - Gets the index sets for each composed object 851 852 Collective on DMComposite 853 854 Input Parameter: 855 . dm - the packer object 856 857 Output Parameters: 858 . is - the array of index sets 859 860 Level: advanced 861 862 Notes: 863 The is entries should be destroyed with ISDestroy(), the is array should be freed with PetscFree() 864 865 These could be used to extract a subset of vector entries for a "multi-physics" preconditioner 866 867 Use DMCompositeGetLocalISs() for index sets in the packed local numbering, and 868 DMCompositeGetISLocalToGlobalMappings() for to map local sub-DM (including ghost) indices to packed global 869 indices. 870 871 .seealso DMDestroy(), DMCompositeAddDM(), DMCreateGlobalVector(), 872 DMCompositeGather(), DMCompositeCreate(), DMCompositeGetAccess(), DMCompositeScatter(), 873 DMCompositeGetLocalVectors(), DMCompositeRestoreLocalVectors(),DMCompositeGetEntries() 874 875 @*/ 876 877 PetscErrorCode DMCompositeGetGlobalISs(DM dm,IS *is[]) 878 { 879 PetscErrorCode ierr; 880 PetscInt cnt = 0; 881 struct DMCompositeLink *next; 882 PetscMPIInt rank; 883 DM_Composite *com = (DM_Composite*)dm->data; 884 885 PetscFunctionBegin; 886 PetscValidHeaderSpecific(dm,DM_CLASSID,1); 887 ierr = PetscMalloc1((com->nDM),is);CHKERRQ(ierr); 888 next = com->next; 889 ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)dm),&rank);CHKERRQ(ierr); 890 891 /* loop over packed objects, handling one at at time */ 892 while (next) { 893 ierr = ISCreateStride(PetscObjectComm((PetscObject)dm),next->n,next->grstart,1,&(*is)[cnt]);CHKERRQ(ierr); 894 if (dm->fields) { 895 MatNullSpace space; 896 Mat pmat; 897 898 if (cnt >= dm->numFields) continue; 899 ierr = PetscObjectQuery(dm->fields[cnt], "nullspace", (PetscObject*) &space);CHKERRQ(ierr); 900 if (space) {ierr = PetscObjectCompose((PetscObject) (*is)[cnt], "nullspace", (PetscObject) space);CHKERRQ(ierr);} 901 ierr = PetscObjectQuery(dm->fields[cnt], "nearnullspace", (PetscObject*) &space);CHKERRQ(ierr); 902 if (space) {ierr = PetscObjectCompose((PetscObject) (*is)[cnt], "nearnullspace", (PetscObject) space);CHKERRQ(ierr);} 903 ierr = PetscObjectQuery(dm->fields[cnt], "pmat", (PetscObject*) &pmat);CHKERRQ(ierr); 904 if (pmat) {ierr = PetscObjectCompose((PetscObject) (*is)[cnt], "pmat", (PetscObject) pmat);CHKERRQ(ierr);} 905 } 906 cnt++; 907 next = next->next; 908 } 909 PetscFunctionReturn(0); 910 } 911 912 #undef __FUNCT__ 913 #define __FUNCT__ "DMCreateFieldIS_Composite" 914 PetscErrorCode DMCreateFieldIS_Composite(DM dm, PetscInt *numFields,char ***fieldNames, IS **fields) 915 { 916 PetscInt nDM; 917 DM *dms; 918 PetscInt i; 919 PetscErrorCode ierr; 920 921 PetscFunctionBegin; 922 ierr = DMCompositeGetNumberDM(dm, &nDM);CHKERRQ(ierr); 923 if (numFields) *numFields = nDM; 924 ierr = DMCompositeGetGlobalISs(dm, fields);CHKERRQ(ierr); 925 if (fieldNames) { 926 ierr = PetscMalloc1(nDM, &dms);CHKERRQ(ierr); 927 ierr = PetscMalloc1(nDM, fieldNames);CHKERRQ(ierr); 928 ierr = DMCompositeGetEntriesArray(dm, dms);CHKERRQ(ierr); 929 for (i=0; i<nDM; i++) { 930 char buf[256]; 931 const char *splitname; 932 933 /* Split naming precedence: object name, prefix, number */ 934 splitname = ((PetscObject) dm)->name; 935 if (!splitname) { 936 ierr = PetscObjectGetOptionsPrefix((PetscObject)dms[i],&splitname);CHKERRQ(ierr); 937 if (splitname) { 938 size_t len; 939 ierr = PetscStrncpy(buf,splitname,sizeof(buf));CHKERRQ(ierr); 940 buf[sizeof(buf) - 1] = 0; 941 ierr = PetscStrlen(buf,&len);CHKERRQ(ierr); 942 if (buf[len-1] == '_') buf[len-1] = 0; /* Remove trailing underscore if it was used */ 943 splitname = buf; 944 } 945 } 946 if (!splitname) { 947 ierr = PetscSNPrintf(buf,sizeof(buf),"%D",i);CHKERRQ(ierr); 948 splitname = buf; 949 } 950 ierr = PetscStrallocpy(splitname,&(*fieldNames)[i]);CHKERRQ(ierr); 951 } 952 ierr = PetscFree(dms);CHKERRQ(ierr); 953 } 954 PetscFunctionReturn(0); 955 } 956 957 /* 958 This could take over from DMCreateFieldIS(), as it is more general, 959 making DMCreateFieldIS() a special case -- calling with dmlist == NULL; 960 At this point it's probably best to be less intrusive, however. 961 */ 962 #undef __FUNCT__ 963 #define __FUNCT__ "DMCreateFieldDecomposition_Composite" 964 PetscErrorCode DMCreateFieldDecomposition_Composite(DM dm, PetscInt *len,char ***namelist, IS **islist, DM **dmlist) 965 { 966 PetscInt nDM; 967 PetscInt i; 968 PetscErrorCode ierr; 969 970 PetscFunctionBegin; 971 ierr = DMCreateFieldIS_Composite(dm, len, namelist, islist);CHKERRQ(ierr); 972 if (dmlist) { 973 ierr = DMCompositeGetNumberDM(dm, &nDM);CHKERRQ(ierr); 974 ierr = PetscMalloc1(nDM, dmlist);CHKERRQ(ierr); 975 ierr = DMCompositeGetEntriesArray(dm, *dmlist);CHKERRQ(ierr); 976 for (i=0; i<nDM; i++) { 977 ierr = PetscObjectReference((PetscObject)((*dmlist)[i]));CHKERRQ(ierr); 978 } 979 } 980 PetscFunctionReturn(0); 981 } 982 983 984 985 /* -------------------------------------------------------------------------------------*/ 986 #undef __FUNCT__ 987 #define __FUNCT__ "DMCompositeGetLocalVectors" 988 /*@C 989 DMCompositeGetLocalVectors - Gets local vectors for each part of a DMComposite. 990 Use DMCompositeRestoreLocalVectors() to return them. 991 992 Not Collective 993 994 Input Parameter: 995 . dm - the packer object 996 997 Output Parameter: 998 . Vec ... - the individual sequential Vecs 999 1000 Level: advanced 1001 1002 .seealso DMDestroy(), DMCompositeAddDM(), DMCreateGlobalVector(), 1003 DMCompositeGather(), DMCompositeCreate(), DMCompositeGetISLocalToGlobalMappings(), DMCompositeGetAccess(), 1004 DMCompositeRestoreLocalVectors(), DMCompositeScatter(), DMCompositeGetEntries() 1005 1006 @*/ 1007 PetscErrorCode DMCompositeGetLocalVectors(DM dm,...) 1008 { 1009 va_list Argp; 1010 PetscErrorCode ierr; 1011 struct DMCompositeLink *next; 1012 DM_Composite *com = (DM_Composite*)dm->data; 1013 1014 PetscFunctionBegin; 1015 PetscValidHeaderSpecific(dm,DM_CLASSID,1); 1016 next = com->next; 1017 /* loop over packed objects, handling one at at time */ 1018 va_start(Argp,dm); 1019 while (next) { 1020 Vec *vec; 1021 vec = va_arg(Argp, Vec*); 1022 if (vec) {ierr = DMGetLocalVector(next->dm,vec);CHKERRQ(ierr);} 1023 next = next->next; 1024 } 1025 va_end(Argp); 1026 PetscFunctionReturn(0); 1027 } 1028 1029 #undef __FUNCT__ 1030 #define __FUNCT__ "DMCompositeRestoreLocalVectors" 1031 /*@C 1032 DMCompositeRestoreLocalVectors - Restores local vectors for each part of a DMComposite. 1033 1034 Not Collective 1035 1036 Input Parameter: 1037 . dm - the packer object 1038 1039 Output Parameter: 1040 . Vec ... - the individual sequential Vecs 1041 1042 Level: advanced 1043 1044 .seealso DMDestroy(), DMCompositeAddDM(), DMCreateGlobalVector(), 1045 DMCompositeGather(), DMCompositeCreate(), DMCompositeGetISLocalToGlobalMappings(), DMCompositeGetAccess(), 1046 DMCompositeGetLocalVectors(), DMCompositeScatter(), DMCompositeGetEntries() 1047 1048 @*/ 1049 PetscErrorCode DMCompositeRestoreLocalVectors(DM dm,...) 1050 { 1051 va_list Argp; 1052 PetscErrorCode ierr; 1053 struct DMCompositeLink *next; 1054 DM_Composite *com = (DM_Composite*)dm->data; 1055 1056 PetscFunctionBegin; 1057 PetscValidHeaderSpecific(dm,DM_CLASSID,1); 1058 next = com->next; 1059 /* loop over packed objects, handling one at at time */ 1060 va_start(Argp,dm); 1061 while (next) { 1062 Vec *vec; 1063 vec = va_arg(Argp, Vec*); 1064 if (vec) {ierr = DMRestoreLocalVector(next->dm,vec);CHKERRQ(ierr);} 1065 next = next->next; 1066 } 1067 va_end(Argp); 1068 PetscFunctionReturn(0); 1069 } 1070 1071 /* -------------------------------------------------------------------------------------*/ 1072 #undef __FUNCT__ 1073 #define __FUNCT__ "DMCompositeGetEntries" 1074 /*@C 1075 DMCompositeGetEntries - Gets the DM for each entry in a DMComposite. 1076 1077 Not Collective 1078 1079 Input Parameter: 1080 . dm - the packer object 1081 1082 Output Parameter: 1083 . DM ... - the individual entries (DMs) 1084 1085 Level: advanced 1086 1087 .seealso DMDestroy(), DMCompositeAddDM(), DMCreateGlobalVector(), DMCompositeGetEntriesArray() 1088 DMCompositeGather(), DMCompositeCreate(), DMCompositeGetISLocalToGlobalMappings(), DMCompositeGetAccess(), 1089 DMCompositeRestoreLocalVectors(), DMCompositeGetLocalVectors(), DMCompositeScatter(), 1090 DMCompositeGetLocalVectors(), DMCompositeRestoreLocalVectors() 1091 1092 @*/ 1093 PetscErrorCode DMCompositeGetEntries(DM dm,...) 1094 { 1095 va_list Argp; 1096 struct DMCompositeLink *next; 1097 DM_Composite *com = (DM_Composite*)dm->data; 1098 1099 PetscFunctionBegin; 1100 PetscValidHeaderSpecific(dm,DM_CLASSID,1); 1101 next = com->next; 1102 /* loop over packed objects, handling one at at time */ 1103 va_start(Argp,dm); 1104 while (next) { 1105 DM *dmn; 1106 dmn = va_arg(Argp, DM*); 1107 if (dmn) *dmn = next->dm; 1108 next = next->next; 1109 } 1110 va_end(Argp); 1111 PetscFunctionReturn(0); 1112 } 1113 1114 #undef __FUNCT__ 1115 #define __FUNCT__ "DMCompositeGetEntriesArray" 1116 /*@C 1117 DMCompositeGetEntriesArray - Gets the DM for each entry in a DMComposite. 1118 1119 Not Collective 1120 1121 Input Parameter: 1122 + dm - the packer object 1123 - dms - array of sufficient length (see DMCompositeGetNumberDM()), holds the DMs on output 1124 1125 Level: advanced 1126 1127 .seealso DMDestroy(), DMCompositeAddDM(), DMCreateGlobalVector(), DMCompositeGetEntries() 1128 DMCompositeGather(), DMCompositeCreate(), DMCompositeGetISLocalToGlobalMappings(), DMCompositeGetAccess(), 1129 DMCompositeRestoreLocalVectors(), DMCompositeGetLocalVectors(), DMCompositeScatter(), 1130 DMCompositeGetLocalVectors(), DMCompositeRestoreLocalVectors() 1131 1132 @*/ 1133 PetscErrorCode DMCompositeGetEntriesArray(DM dm,DM dms[]) 1134 { 1135 struct DMCompositeLink *next; 1136 DM_Composite *com = (DM_Composite*)dm->data; 1137 PetscInt i; 1138 1139 PetscFunctionBegin; 1140 PetscValidHeaderSpecific(dm,DM_CLASSID,1); 1141 /* loop over packed objects, handling one at at time */ 1142 for (next=com->next,i=0; next; next=next->next,i++) dms[i] = next->dm; 1143 PetscFunctionReturn(0); 1144 } 1145 1146 #undef __FUNCT__ 1147 #define __FUNCT__ "DMRefine_Composite" 1148 PetscErrorCode DMRefine_Composite(DM dmi,MPI_Comm comm,DM *fine) 1149 { 1150 PetscErrorCode ierr; 1151 struct DMCompositeLink *next; 1152 DM_Composite *com = (DM_Composite*)dmi->data; 1153 DM dm; 1154 1155 PetscFunctionBegin; 1156 PetscValidHeaderSpecific(dmi,DM_CLASSID,1); 1157 if (comm == MPI_COMM_NULL) { 1158 ierr = PetscObjectGetComm((PetscObject)dmi,&comm);CHKERRQ(ierr); 1159 } 1160 ierr = DMSetUp(dmi);CHKERRQ(ierr); 1161 next = com->next; 1162 ierr = DMCompositeCreate(comm,fine);CHKERRQ(ierr); 1163 1164 /* loop over packed objects, handling one at at time */ 1165 while (next) { 1166 ierr = DMRefine(next->dm,comm,&dm);CHKERRQ(ierr); 1167 ierr = DMCompositeAddDM(*fine,dm);CHKERRQ(ierr); 1168 ierr = PetscObjectDereference((PetscObject)dm);CHKERRQ(ierr); 1169 next = next->next; 1170 } 1171 PetscFunctionReturn(0); 1172 } 1173 1174 #undef __FUNCT__ 1175 #define __FUNCT__ "DMCoarsen_Composite" 1176 PetscErrorCode DMCoarsen_Composite(DM dmi,MPI_Comm comm,DM *fine) 1177 { 1178 PetscErrorCode ierr; 1179 struct DMCompositeLink *next; 1180 DM_Composite *com = (DM_Composite*)dmi->data; 1181 DM dm; 1182 1183 PetscFunctionBegin; 1184 PetscValidHeaderSpecific(dmi,DM_CLASSID,1); 1185 ierr = DMSetUp(dmi);CHKERRQ(ierr); 1186 if (comm == MPI_COMM_NULL) { 1187 ierr = PetscObjectGetComm((PetscObject)dmi,&comm);CHKERRQ(ierr); 1188 } 1189 next = com->next; 1190 ierr = DMCompositeCreate(comm,fine);CHKERRQ(ierr); 1191 1192 /* loop over packed objects, handling one at at time */ 1193 while (next) { 1194 ierr = DMCoarsen(next->dm,comm,&dm);CHKERRQ(ierr); 1195 ierr = DMCompositeAddDM(*fine,dm);CHKERRQ(ierr); 1196 ierr = PetscObjectDereference((PetscObject)dm);CHKERRQ(ierr); 1197 next = next->next; 1198 } 1199 PetscFunctionReturn(0); 1200 } 1201 1202 #undef __FUNCT__ 1203 #define __FUNCT__ "DMCreateInterpolation_Composite" 1204 PetscErrorCode DMCreateInterpolation_Composite(DM coarse,DM fine,Mat *A,Vec *v) 1205 { 1206 PetscErrorCode ierr; 1207 PetscInt m,n,M,N,nDM,i; 1208 struct DMCompositeLink *nextc; 1209 struct DMCompositeLink *nextf; 1210 Vec gcoarse,gfine,*vecs; 1211 DM_Composite *comcoarse = (DM_Composite*)coarse->data; 1212 DM_Composite *comfine = (DM_Composite*)fine->data; 1213 Mat *mats; 1214 1215 PetscFunctionBegin; 1216 PetscValidHeaderSpecific(coarse,DM_CLASSID,1); 1217 PetscValidHeaderSpecific(fine,DM_CLASSID,2); 1218 ierr = DMSetUp(coarse);CHKERRQ(ierr); 1219 ierr = DMSetUp(fine);CHKERRQ(ierr); 1220 /* use global vectors only for determining matrix layout */ 1221 ierr = DMGetGlobalVector(coarse,&gcoarse);CHKERRQ(ierr); 1222 ierr = DMGetGlobalVector(fine,&gfine);CHKERRQ(ierr); 1223 ierr = VecGetLocalSize(gcoarse,&n);CHKERRQ(ierr); 1224 ierr = VecGetLocalSize(gfine,&m);CHKERRQ(ierr); 1225 ierr = VecGetSize(gcoarse,&N);CHKERRQ(ierr); 1226 ierr = VecGetSize(gfine,&M);CHKERRQ(ierr); 1227 ierr = DMRestoreGlobalVector(coarse,&gcoarse);CHKERRQ(ierr); 1228 ierr = DMRestoreGlobalVector(fine,&gfine);CHKERRQ(ierr); 1229 1230 nDM = comfine->nDM; 1231 if (nDM != comcoarse->nDM) SETERRQ2(PetscObjectComm((PetscObject)fine),PETSC_ERR_ARG_INCOMP,"Fine DMComposite has %D entries, but coarse has %D",nDM,comcoarse->nDM); 1232 ierr = PetscCalloc1(nDM*nDM,&mats);CHKERRQ(ierr); 1233 if (v) { 1234 ierr = PetscCalloc1(nDM,&vecs);CHKERRQ(ierr); 1235 } 1236 1237 /* loop over packed objects, handling one at at time */ 1238 for (nextc=comcoarse->next,nextf=comfine->next,i=0; nextc; nextc=nextc->next,nextf=nextf->next,i++) { 1239 if (!v) { 1240 ierr = DMCreateInterpolation(nextc->dm,nextf->dm,&mats[i*nDM+i],NULL);CHKERRQ(ierr); 1241 } else { 1242 ierr = DMCreateInterpolation(nextc->dm,nextf->dm,&mats[i*nDM+i],&vecs[i]);CHKERRQ(ierr); 1243 } 1244 } 1245 ierr = MatCreateNest(PetscObjectComm((PetscObject)fine),nDM,NULL,nDM,NULL,mats,A);CHKERRQ(ierr); 1246 if (v) { 1247 ierr = VecCreateNest(PetscObjectComm((PetscObject)fine),nDM,NULL,vecs,v);CHKERRQ(ierr); 1248 } 1249 for (i=0; i<nDM*nDM; i++) {ierr = MatDestroy(&mats[i]);CHKERRQ(ierr);} 1250 ierr = PetscFree(mats);CHKERRQ(ierr); 1251 if (v) { 1252 for (i=0; i<nDM; i++) {ierr = VecDestroy(&vecs[i]);CHKERRQ(ierr);} 1253 ierr = PetscFree(vecs);CHKERRQ(ierr); 1254 } 1255 PetscFunctionReturn(0); 1256 } 1257 1258 #undef __FUNCT__ 1259 #define __FUNCT__ "DMGetLocalToGlobalMapping_Composite" 1260 static PetscErrorCode DMGetLocalToGlobalMapping_Composite(DM dm) 1261 { 1262 DM_Composite *com = (DM_Composite*)dm->data; 1263 ISLocalToGlobalMapping *ltogs; 1264 PetscInt i; 1265 PetscErrorCode ierr; 1266 1267 PetscFunctionBegin; 1268 /* Set the ISLocalToGlobalMapping on the new matrix */ 1269 ierr = DMCompositeGetISLocalToGlobalMappings(dm,<ogs);CHKERRQ(ierr); 1270 ierr = ISLocalToGlobalMappingConcatenate(PetscObjectComm((PetscObject)dm),com->nDM,ltogs,&dm->ltogmap);CHKERRQ(ierr); 1271 for (i=0; i<com->nDM; i++) {ierr = ISLocalToGlobalMappingDestroy(<ogs[i]);CHKERRQ(ierr);} 1272 ierr = PetscFree(ltogs);CHKERRQ(ierr); 1273 PetscFunctionReturn(0); 1274 } 1275 1276 1277 #undef __FUNCT__ 1278 #define __FUNCT__ "DMCreateColoring_Composite" 1279 PetscErrorCode DMCreateColoring_Composite(DM dm,ISColoringType ctype,ISColoring *coloring) 1280 { 1281 PetscErrorCode ierr; 1282 PetscInt n,i,cnt; 1283 ISColoringValue *colors; 1284 PetscBool dense = PETSC_FALSE; 1285 ISColoringValue maxcol = 0; 1286 DM_Composite *com = (DM_Composite*)dm->data; 1287 1288 PetscFunctionBegin; 1289 PetscValidHeaderSpecific(dm,DM_CLASSID,1); 1290 if (ctype == IS_COLORING_GHOSTED) SETERRQ(PetscObjectComm((PetscObject)dm),PETSC_ERR_SUP,"Only global coloring supported"); 1291 else if (ctype == IS_COLORING_GLOBAL) { 1292 n = com->n; 1293 } else SETERRQ(PetscObjectComm((PetscObject)dm),PETSC_ERR_ARG_OUTOFRANGE,"Unknown ISColoringType"); 1294 ierr = PetscMalloc1(n,&colors);CHKERRQ(ierr); /* freed in ISColoringDestroy() */ 1295 1296 ierr = PetscOptionsGetBool(NULL,"-dmcomposite_dense_jacobian",&dense,NULL);CHKERRQ(ierr); 1297 if (dense) { 1298 for (i=0; i<n; i++) { 1299 colors[i] = (ISColoringValue)(com->rstart + i); 1300 } 1301 maxcol = com->N; 1302 } else { 1303 struct DMCompositeLink *next = com->next; 1304 PetscMPIInt rank; 1305 1306 ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)dm),&rank);CHKERRQ(ierr); 1307 cnt = 0; 1308 while (next) { 1309 ISColoring lcoloring; 1310 1311 ierr = DMCreateColoring(next->dm,IS_COLORING_GLOBAL,&lcoloring);CHKERRQ(ierr); 1312 for (i=0; i<lcoloring->N; i++) { 1313 colors[cnt++] = maxcol + lcoloring->colors[i]; 1314 } 1315 maxcol += lcoloring->n; 1316 ierr = ISColoringDestroy(&lcoloring);CHKERRQ(ierr); 1317 next = next->next; 1318 } 1319 } 1320 ierr = ISColoringCreate(PetscObjectComm((PetscObject)dm),maxcol,n,colors,coloring);CHKERRQ(ierr); 1321 PetscFunctionReturn(0); 1322 } 1323 1324 #undef __FUNCT__ 1325 #define __FUNCT__ "DMGlobalToLocalBegin_Composite" 1326 PetscErrorCode DMGlobalToLocalBegin_Composite(DM dm,Vec gvec,InsertMode mode,Vec lvec) 1327 { 1328 PetscErrorCode ierr; 1329 struct DMCompositeLink *next; 1330 PetscInt cnt = 3; 1331 PetscMPIInt rank; 1332 PetscScalar *garray,*larray; 1333 DM_Composite *com = (DM_Composite*)dm->data; 1334 1335 PetscFunctionBegin; 1336 PetscValidHeaderSpecific(dm,DM_CLASSID,1); 1337 PetscValidHeaderSpecific(gvec,VEC_CLASSID,2); 1338 next = com->next; 1339 if (!com->setup) { 1340 ierr = DMSetUp(dm);CHKERRQ(ierr); 1341 } 1342 ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)dm),&rank);CHKERRQ(ierr); 1343 ierr = VecGetArray(gvec,&garray);CHKERRQ(ierr); 1344 ierr = VecGetArray(lvec,&larray);CHKERRQ(ierr); 1345 1346 /* loop over packed objects, handling one at at time */ 1347 while (next) { 1348 Vec local,global; 1349 PetscInt N; 1350 1351 ierr = DMGetGlobalVector(next->dm,&global);CHKERRQ(ierr); 1352 ierr = VecGetLocalSize(global,&N);CHKERRQ(ierr); 1353 ierr = VecPlaceArray(global,garray);CHKERRQ(ierr); 1354 ierr = DMGetLocalVector(next->dm,&local);CHKERRQ(ierr); 1355 ierr = VecPlaceArray(local,larray);CHKERRQ(ierr); 1356 ierr = DMGlobalToLocalBegin(next->dm,global,mode,local);CHKERRQ(ierr); 1357 ierr = DMGlobalToLocalEnd(next->dm,global,mode,local);CHKERRQ(ierr); 1358 ierr = VecResetArray(global);CHKERRQ(ierr); 1359 ierr = VecResetArray(local);CHKERRQ(ierr); 1360 ierr = DMRestoreGlobalVector(next->dm,&global);CHKERRQ(ierr); 1361 ierr = DMRestoreGlobalVector(next->dm,&local);CHKERRQ(ierr); 1362 cnt++; 1363 larray += next->nlocal; 1364 next = next->next; 1365 } 1366 1367 ierr = VecRestoreArray(gvec,NULL);CHKERRQ(ierr); 1368 ierr = VecRestoreArray(lvec,NULL);CHKERRQ(ierr); 1369 PetscFunctionReturn(0); 1370 } 1371 1372 #undef __FUNCT__ 1373 #define __FUNCT__ "DMGlobalToLocalEnd_Composite" 1374 PetscErrorCode DMGlobalToLocalEnd_Composite(DM dm,Vec gvec,InsertMode mode,Vec lvec) 1375 { 1376 PetscFunctionBegin; 1377 PetscFunctionReturn(0); 1378 } 1379 1380 /*MC 1381 DMCOMPOSITE = "composite" - A DM object that is used to manage data for a collection of DMs 1382 1383 1384 1385 Level: intermediate 1386 1387 .seealso: DMType, DMCOMPOSITE, DMDACreate(), DMCreate(), DMSetType(), DMCompositeCreate() 1388 M*/ 1389 1390 1391 #undef __FUNCT__ 1392 #define __FUNCT__ "DMCreate_Composite" 1393 PETSC_EXTERN PetscErrorCode DMCreate_Composite(DM p) 1394 { 1395 PetscErrorCode ierr; 1396 DM_Composite *com; 1397 1398 PetscFunctionBegin; 1399 ierr = PetscNewLog(p,&com);CHKERRQ(ierr); 1400 p->data = com; 1401 ierr = PetscObjectChangeTypeName((PetscObject)p,"DMComposite");CHKERRQ(ierr); 1402 com->n = 0; 1403 com->next = NULL; 1404 com->nDM = 0; 1405 1406 p->ops->createglobalvector = DMCreateGlobalVector_Composite; 1407 p->ops->createlocalvector = DMCreateLocalVector_Composite; 1408 p->ops->getlocaltoglobalmapping = DMGetLocalToGlobalMapping_Composite; 1409 p->ops->getlocaltoglobalmappingblock = 0; 1410 p->ops->createfieldis = DMCreateFieldIS_Composite; 1411 p->ops->createfielddecomposition = DMCreateFieldDecomposition_Composite; 1412 p->ops->refine = DMRefine_Composite; 1413 p->ops->coarsen = DMCoarsen_Composite; 1414 p->ops->createinterpolation = DMCreateInterpolation_Composite; 1415 p->ops->creatematrix = DMCreateMatrix_Composite; 1416 p->ops->getcoloring = DMCreateColoring_Composite; 1417 p->ops->globaltolocalbegin = DMGlobalToLocalBegin_Composite; 1418 p->ops->globaltolocalend = DMGlobalToLocalEnd_Composite; 1419 p->ops->destroy = DMDestroy_Composite; 1420 p->ops->view = DMView_Composite; 1421 p->ops->setup = DMSetUp_Composite; 1422 PetscFunctionReturn(0); 1423 } 1424 1425 #undef __FUNCT__ 1426 #define __FUNCT__ "DMCompositeCreate" 1427 /*@C 1428 DMCompositeCreate - Creates a vector packer, used to generate "composite" 1429 vectors made up of several subvectors. 1430 1431 Collective on MPI_Comm 1432 1433 Input Parameter: 1434 . comm - the processors that will share the global vector 1435 1436 Output Parameters: 1437 . packer - the packer object 1438 1439 Level: advanced 1440 1441 .seealso DMDestroy(), DMCompositeAddDM(), DMCompositeScatter(), 1442 DMCompositeGather(), DMCreateGlobalVector(), DMCompositeGetISLocalToGlobalMappings(), DMCompositeGetAccess() 1443 DMCompositeGetLocalVectors(), DMCompositeRestoreLocalVectors(), DMCompositeGetEntries() 1444 1445 @*/ 1446 PetscErrorCode DMCompositeCreate(MPI_Comm comm,DM *packer) 1447 { 1448 PetscErrorCode ierr; 1449 1450 PetscFunctionBegin; 1451 PetscValidPointer(packer,2); 1452 ierr = DMCreate(comm,packer);CHKERRQ(ierr); 1453 ierr = DMSetType(*packer,DMCOMPOSITE);CHKERRQ(ierr); 1454 PetscFunctionReturn(0); 1455 } 1456