1 2 /* 3 Code for manipulating distributed regular 1d arrays in parallel. 4 This file was created by Peter Mell 6/30/95 5 */ 6 7 #include <private/daimpl.h> /*I "petscdmda.h" I*/ 8 9 const char *DMDABoundaryTypes[] = {"BOUNDARY_NONE","BOUNDARY_GHOSTED","BOUNDARY_PERIODIC","DMDA_",0}; 10 11 #undef __FUNCT__ 12 #define __FUNCT__ "DMView_DA_1d" 13 PetscErrorCode DMView_DA_1d(DM da,PetscViewer viewer) 14 { 15 PetscErrorCode ierr; 16 PetscMPIInt rank; 17 PetscBool iascii,isdraw,isbinary; 18 DM_DA *dd = (DM_DA*)da->data; 19 #if defined(PETSC_HAVE_MATLAB_ENGINE) 20 PetscBool ismatlab; 21 #endif 22 23 PetscFunctionBegin; 24 ierr = MPI_Comm_rank(((PetscObject)da)->comm,&rank);CHKERRQ(ierr); 25 26 ierr = PetscTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr); 27 ierr = PetscTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr); 28 ierr = PetscTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary);CHKERRQ(ierr); 29 #if defined(PETSC_HAVE_MATLAB_ENGINE) 30 ierr = PetscTypeCompare((PetscObject)viewer,PETSCVIEWERMATLAB,&ismatlab);CHKERRQ(ierr); 31 #endif 32 if (iascii) { 33 PetscViewerFormat format; 34 35 ierr = PetscViewerGetFormat(viewer, &format);CHKERRQ(ierr); 36 if (format != PETSC_VIEWER_ASCII_VTK && format != PETSC_VIEWER_ASCII_VTK_CELL) { 37 DMDALocalInfo info; 38 ierr = DMDAGetLocalInfo(da,&info);CHKERRQ(ierr); 39 ierr = PetscViewerASCIISynchronizedAllow(viewer,PETSC_TRUE);CHKERRQ(ierr); 40 ierr = PetscViewerASCIISynchronizedPrintf(viewer,"Processor [%d] M %D m %D w %D s %D\n",rank,dd->M,dd->m,dd->w,dd->s);CHKERRQ(ierr); 41 ierr = PetscViewerASCIISynchronizedPrintf(viewer,"X range of indices: %D %D\n",info.xs,info.xs+info.xm);CHKERRQ(ierr); 42 ierr = PetscViewerFlush(viewer);CHKERRQ(ierr); 43 ierr = PetscViewerASCIISynchronizedAllow(viewer,PETSC_FALSE);CHKERRQ(ierr); 44 } else { 45 ierr = DMView_DA_VTK(da, viewer);CHKERRQ(ierr); 46 } 47 } else if (isdraw) { 48 PetscDraw draw; 49 double ymin = -1,ymax = 1,xmin = -1,xmax = dd->M,x; 50 PetscInt base; 51 char node[10]; 52 PetscBool isnull; 53 54 ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr); 55 ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr); if (isnull) PetscFunctionReturn(0); 56 57 ierr = PetscDrawSetCoordinates(draw,xmin,ymin,xmax,ymax);CHKERRQ(ierr); 58 ierr = PetscDrawSynchronizedClear(draw);CHKERRQ(ierr); 59 60 /* first processor draws all node lines */ 61 if (!rank) { 62 PetscInt xmin_tmp; 63 ymin = 0.0; ymax = 0.3; 64 65 /* ADIC doesn't like doubles in a for loop */ 66 for (xmin_tmp =0; xmin_tmp < dd->M; xmin_tmp++) { 67 ierr = PetscDrawLine(draw,(double)xmin_tmp,ymin,(double)xmin_tmp,ymax,PETSC_DRAW_BLACK);CHKERRQ(ierr); 68 } 69 70 xmin = 0.0; xmax = dd->M - 1; 71 ierr = PetscDrawLine(draw,xmin,ymin,xmax,ymin,PETSC_DRAW_BLACK);CHKERRQ(ierr); 72 ierr = PetscDrawLine(draw,xmin,ymax,xmax,ymax,PETSC_DRAW_BLACK);CHKERRQ(ierr); 73 } 74 75 ierr = PetscDrawSynchronizedFlush(draw);CHKERRQ(ierr); 76 ierr = PetscDrawPause(draw);CHKERRQ(ierr); 77 78 /* draw my box */ 79 ymin = 0; ymax = 0.3; xmin = dd->xs / dd->w; xmax = (dd->xe / dd->w) - 1; 80 ierr = PetscDrawLine(draw,xmin,ymin,xmax,ymin,PETSC_DRAW_RED);CHKERRQ(ierr); 81 ierr = PetscDrawLine(draw,xmin,ymin,xmin,ymax,PETSC_DRAW_RED);CHKERRQ(ierr); 82 ierr = PetscDrawLine(draw,xmin,ymax,xmax,ymax,PETSC_DRAW_RED);CHKERRQ(ierr); 83 ierr = PetscDrawLine(draw,xmax,ymin,xmax,ymax,PETSC_DRAW_RED);CHKERRQ(ierr); 84 85 /* Put in index numbers */ 86 base = dd->base / dd->w; 87 for (x=xmin; x<=xmax; x++) { 88 sprintf(node,"%d",(int)base++); 89 ierr = PetscDrawString(draw,x,ymin,PETSC_DRAW_RED,node);CHKERRQ(ierr); 90 } 91 92 ierr = PetscDrawSynchronizedFlush(draw);CHKERRQ(ierr); 93 ierr = PetscDrawPause(draw);CHKERRQ(ierr); 94 } else if (isbinary){ 95 ierr = DMView_DA_Binary(da,viewer);CHKERRQ(ierr); 96 #if defined(PETSC_HAVE_MATLAB_ENGINE) 97 } else if (ismatlab) { 98 ierr = DMView_DA_Matlab(da,viewer);CHKERRQ(ierr); 99 #endif 100 } else SETERRQ1(((PetscObject)da)->comm,PETSC_ERR_SUP,"Viewer type %s not supported for DMDA 1d",((PetscObject)viewer)->type_name); 101 PetscFunctionReturn(0); 102 } 103 104 #undef __FUNCT__ 105 #define __FUNCT__ "DMView_DA_Private" 106 /* 107 Processes command line options to determine if/how a DMDA 108 is to be viewed. Called by DMDACreateXX() 109 */ 110 PetscErrorCode DMView_DA_Private(DM da) 111 { 112 PetscErrorCode ierr; 113 PetscBool flg1 = PETSC_FALSE; 114 PetscViewer view; 115 116 PetscFunctionBegin; 117 ierr = PetscOptionsBegin(((PetscObject)da)->comm,((PetscObject)da)->prefix,"DMDA viewing options","DMDA");CHKERRQ(ierr); 118 ierr = PetscOptionsBool("-da_view","Print information about the DMDA's distribution","DMView",PETSC_FALSE,&flg1,PETSC_NULL);CHKERRQ(ierr); 119 if (flg1) { 120 ierr = PetscViewerASCIIGetStdout(((PetscObject)da)->comm,&view);CHKERRQ(ierr); 121 ierr = DMView(da,view);CHKERRQ(ierr); 122 } 123 flg1 = PETSC_FALSE; 124 ierr = PetscOptionsBool("-da_view_draw","Draw how the DMDA is distributed","DMView",PETSC_FALSE,&flg1,PETSC_NULL);CHKERRQ(ierr); 125 if (flg1) {ierr = DMView(da,PETSC_VIEWER_DRAW_(((PetscObject)da)->comm));CHKERRQ(ierr);} 126 ierr = PetscOptionsEnd();CHKERRQ(ierr); 127 PetscFunctionReturn(0); 128 } 129 130 #undef __FUNCT__ 131 #define __FUNCT__ "DMSetUp_DA_1D" 132 PetscErrorCode DMSetUp_DA_1D(DM da) 133 { 134 DM_DA *dd = (DM_DA*)da->data; 135 const PetscInt M = dd->M; 136 const PetscInt dof = dd->w; 137 const PetscInt s = dd->s; 138 const PetscInt sDist = s*dof; /* absolute stencil distance */ 139 const PetscInt *lx = dd->lx; 140 const DMDABoundaryType bx = dd->bx; 141 MPI_Comm comm; 142 Vec local, global; 143 VecScatter ltog, gtol; 144 IS to, from; 145 PetscBool flg1 = PETSC_FALSE, flg2 = PETSC_FALSE; 146 PetscMPIInt rank, size; 147 PetscInt i,*idx,nn,left,xs,xe,x,Xs,Xe,start,end,m,IXs,IXe; 148 PetscErrorCode ierr; 149 150 PetscFunctionBegin; 151 if (dof < 1) SETERRQ1(((PetscObject)da)->comm,PETSC_ERR_ARG_OUTOFRANGE,"Must have 1 or more degrees of freedom per node: %D",dof); 152 if (s < 0) SETERRQ1(((PetscObject)da)->comm,PETSC_ERR_ARG_OUTOFRANGE,"Stencil width cannot be negative: %D",s); 153 154 dd->dim = 1; 155 ierr = PetscMalloc(dof*sizeof(char*),&dd->fieldname);CHKERRQ(ierr); 156 ierr = PetscMemzero(dd->fieldname,dof*sizeof(char*));CHKERRQ(ierr); 157 ierr = PetscObjectGetComm((PetscObject) da, &comm);CHKERRQ(ierr); 158 ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 159 ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 160 161 dd->m = size; 162 m = dd->m; 163 164 if (s > 0) { 165 /* if not communicating data then should be ok to have nothing on some processes */ 166 if (M < m) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"More processes than data points! %D %D",m,M); 167 if ((M-1) < s) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Array is too small for stencil! %D %D",M-1,s); 168 } 169 170 /* 171 Determine locally owned region 172 xs is the first local node number, x is the number of local nodes 173 */ 174 if (!lx) { 175 ierr = PetscOptionsGetBool(PETSC_NULL,"-da_partition_blockcomm",&flg1,PETSC_NULL);CHKERRQ(ierr); 176 ierr = PetscOptionsGetBool(PETSC_NULL,"-da_partition_nodes_at_end",&flg2,PETSC_NULL);CHKERRQ(ierr); 177 if (flg1) { /* Block Comm type Distribution */ 178 xs = rank*M/m; 179 x = (rank + 1)*M/m - xs; 180 } else if (flg2) { /* The odd nodes are evenly distributed across last nodes */ 181 x = (M + rank)/m; 182 if (M/m == x) { xs = rank*x; } 183 else { xs = rank*(x-1) + (M+rank)%(x*m); } 184 } else { /* The odd nodes are evenly distributed across the first k nodes */ 185 /* Regular PETSc Distribution */ 186 x = M/m + ((M % m) > rank); 187 if (rank >= (M % m)) {xs = (rank * (PetscInt)(M/m) + M % m);} 188 else {xs = rank * (PetscInt)(M/m) + rank;} 189 } 190 } else { 191 x = lx[rank]; 192 xs = 0; 193 for (i=0; i<rank; i++) { 194 xs += lx[i]; 195 } 196 /* verify that data user provided is consistent */ 197 left = xs; 198 for (i=rank; i<size; i++) { 199 left += lx[i]; 200 } 201 if (left != M) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Sum of lx across processors not equal to M %D %D",left,M); 202 } 203 204 /* 205 check if the scatter requires more than one process neighbor or wraps around 206 the domain more than once 207 */ 208 if ((x < s) & ((M > 1) | (bx == DMDA_BOUNDARY_PERIODIC))) { 209 SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Local x-width of domain x %D is smaller than stencil width s %D",x,s); 210 } 211 212 /* From now on x,xs,xe,Xs,Xe are the exact location in the array */ 213 x *= dof; 214 xs *= dof; 215 xe = xs + x; 216 217 /* determine ghost region */ 218 if (bx) { 219 Xs = xs - sDist; 220 Xe = xe + sDist; 221 } else { 222 if ((xs-sDist) >= 0) Xs = xs-sDist; else Xs = 0; 223 if ((xe+sDist) <= M*dof) Xe = xe+sDist; else Xe = M*dof; 224 } 225 226 if (bx == DMDA_BOUNDARY_PERIODIC) { 227 IXs = xs - sDist; 228 IXe = xe + sDist; 229 } else { 230 if ((xs-sDist) >= 0) IXs = xs-sDist; else IXs = 0; 231 if ((xe+sDist) <= M*dof) IXe = xe+sDist; else IXe = M*dof; 232 } 233 234 /* allocate the base parallel and sequential vectors */ 235 dd->Nlocal = x; 236 ierr = VecCreateMPIWithArray(comm,dd->Nlocal,PETSC_DECIDE,0,&global);CHKERRQ(ierr); 237 ierr = VecSetBlockSize(global,dof);CHKERRQ(ierr); 238 dd->nlocal = (Xe-Xs); 239 ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,dd->nlocal,0,&local);CHKERRQ(ierr); 240 ierr = VecSetBlockSize(local,dof);CHKERRQ(ierr); 241 242 /* Create Local to Global Vector Scatter Context */ 243 /* local to global inserts non-ghost point region into global */ 244 ierr = VecGetOwnershipRange(global,&start,&end);CHKERRQ(ierr); 245 ierr = ISCreateStride(comm,x,start,1,&to);CHKERRQ(ierr); 246 ierr = ISCreateStride(comm,x,xs-Xs,1,&from);CHKERRQ(ierr); 247 ierr = VecScatterCreate(local,from,global,to,<og);CHKERRQ(ierr); 248 ierr = PetscLogObjectParent(da,ltog);CHKERRQ(ierr); 249 ierr = ISDestroy(&from);CHKERRQ(ierr); 250 ierr = ISDestroy(&to);CHKERRQ(ierr); 251 252 /* Create Global to Local Vector Scatter Context */ 253 /* global to local must retrieve ghost points */ 254 ierr = ISCreateStride(comm,(IXe-IXs),IXs-Xs,1,&to);CHKERRQ(ierr); 255 256 ierr = PetscMalloc((x+2*sDist)*sizeof(PetscInt),&idx);CHKERRQ(ierr); 257 ierr = PetscLogObjectMemory(da,(x+2*sDist)*sizeof(PetscInt));CHKERRQ(ierr); 258 259 for (i=0; i<IXs-Xs; i++) {idx[i] = -1; } /* prepend with -1s if needed for ghosted case*/ 260 261 nn = IXs-Xs; 262 if (bx == DMDA_BOUNDARY_PERIODIC) { /* Handle all cases with wrap first */ 263 for (i=0; i<sDist; i++) { /* Left ghost points */ 264 if ((xs-sDist+i)>=0) { idx[nn++] = xs-sDist+i;} 265 else { idx[nn++] = M*dof+(xs-sDist+i);} 266 } 267 268 for (i=0; i<x; i++) { idx [nn++] = xs + i;} /* Non-ghost points */ 269 270 for (i=0; i<sDist; i++) { /* Right ghost points */ 271 if ((xe+i)<M*dof) { idx [nn++] = xe+i; } 272 else { idx [nn++] = (xe+i) - M*dof;} 273 } 274 } else { /* Now do all cases with no wrapping */ 275 if (sDist <= xs) {for (i=0; i<sDist; i++) {idx[nn++] = xs - sDist + i;}} 276 else {for (i=0; i<xs; i++) {idx[nn++] = i;}} 277 278 for (i=0; i<x; i++) { idx [nn++] = xs + i;} 279 280 if ((xe+sDist)<=M*dof) {for (i=0; i<sDist; i++) {idx[nn++]=xe+i;}} 281 else {for (i=xe; i<(M*dof); i++) {idx[nn++]=i;}} 282 } 283 284 ierr = ISCreateGeneral(comm,nn-IXs+Xs,&idx[IXs-Xs],PETSC_COPY_VALUES,&from);CHKERRQ(ierr); 285 ierr = VecScatterCreate(global,from,local,to,>ol);CHKERRQ(ierr); 286 ierr = PetscLogObjectParent(da,to);CHKERRQ(ierr); 287 ierr = PetscLogObjectParent(da,from);CHKERRQ(ierr); 288 ierr = PetscLogObjectParent(da,gtol);CHKERRQ(ierr); 289 ierr = ISDestroy(&to);CHKERRQ(ierr); 290 ierr = ISDestroy(&from);CHKERRQ(ierr); 291 ierr = VecDestroy(&local);CHKERRQ(ierr); 292 ierr = VecDestroy(&global);CHKERRQ(ierr); 293 294 dd->xs = xs; dd->xe = xe; dd->ys = 0; dd->ye = 1; dd->zs = 0; dd->ze = 1; 295 dd->Xs = Xs; dd->Xe = Xe; dd->Ys = 0; dd->Ye = 1; dd->Zs = 0; dd->Ze = 1; 296 297 dd->gtol = gtol; 298 dd->ltog = ltog; 299 dd->base = xs; 300 da->ops->view = DMView_DA_1d; 301 302 /* 303 Set the local to global ordering in the global vector, this allows use 304 of VecSetValuesLocal(). 305 */ 306 for (i=0; i<Xe-IXe; i++) {idx[nn++] = -1; } /* pad with -1s if needed for ghosted case*/ 307 308 ierr = ISLocalToGlobalMappingCreate(comm,nn,idx,PETSC_COPY_VALUES,&da->ltogmap);CHKERRQ(ierr); 309 ierr = ISLocalToGlobalMappingBlock(da->ltogmap,dd->w,&da->ltogmapb);CHKERRQ(ierr); 310 ierr = PetscLogObjectParent(da,da->ltogmap);CHKERRQ(ierr); 311 312 dd->idx = idx; 313 dd->Nl = nn; 314 315 PetscFunctionReturn(0); 316 } 317 318 319 #undef __FUNCT__ 320 #define __FUNCT__ "DMDACreate1d" 321 /*@C 322 DMDACreate1d - Creates an object that will manage the communication of one-dimensional 323 regular array data that is distributed across some processors. 324 325 Collective on MPI_Comm 326 327 Input Parameters: 328 + comm - MPI communicator 329 . bx - type of ghost cells at the boundary the array should have, if any. Use 330 DMDA_BOUNDARY_NONE, DMDA_BOUNDARY_GHOSTED, or DMDA_BOUNDARY_PERIODIC. 331 . M - global dimension of the array (use -M to indicate that it may be set to a different value 332 from the command line with -da_grid_x <M>) 333 . dof - number of degrees of freedom per node 334 . s - stencil width 335 - lx - array containing number of nodes in the X direction on each processor, 336 or PETSC_NULL. If non-null, must be of length as the number of processes in the MPI_Comm. 337 338 Output Parameter: 339 . da - the resulting distributed array object 340 341 Options Database Key: 342 + -da_view - Calls DMView() at the conclusion of DMDACreate1d() 343 . -da_grid_x <nx> - number of grid points in x direction; can set if M < 0 344 - -da_refine_x - refinement factor 345 346 Level: beginner 347 348 Notes: 349 The array data itself is NOT stored in the DMDA, it is stored in Vec objects; 350 The appropriate vector objects can be obtained with calls to DMCreateGlobalVector() 351 and DMCreateLocalVector() and calls to VecDuplicate() if more are needed. 352 353 354 .keywords: distributed array, create, one-dimensional 355 356 .seealso: DMDestroy(), DMView(), DMDACreate2d(), DMDACreate3d(), DMGlobalToLocalBegin(), DMDASetRefinementFactor(), 357 DMGlobalToLocalEnd(), DMLocalToGlobalBegin(), DMDALocalToLocalBegin(), DMDALocalToLocalEnd(), DMDAGetRefinementFactor(), 358 DMDAGetInfo(), DMCreateGlobalVector(), DMCreateLocalVector(), DMDACreateNaturalVector(), DMDALoad(), DMDAGetOwnershipRanges() 359 360 @*/ 361 PetscErrorCode DMDACreate1d(MPI_Comm comm, DMDABoundaryType bx, PetscInt M, PetscInt dof, PetscInt s, const PetscInt lx[], DM *da) 362 { 363 PetscErrorCode ierr; 364 PetscMPIInt size; 365 366 PetscFunctionBegin; 367 ierr = DMDACreate(comm, da);CHKERRQ(ierr); 368 ierr = DMDASetDim(*da, 1);CHKERRQ(ierr); 369 ierr = DMDASetSizes(*da, M, 1, 1);CHKERRQ(ierr); 370 ierr = MPI_Comm_size(comm, &size);CHKERRQ(ierr); 371 ierr = DMDASetNumProcs(*da, size, PETSC_DECIDE, PETSC_DECIDE);CHKERRQ(ierr); 372 ierr = DMDASetBoundaryType(*da, bx, DMDA_BOUNDARY_NONE, DMDA_BOUNDARY_NONE);CHKERRQ(ierr); 373 ierr = DMDASetDof(*da, dof);CHKERRQ(ierr); 374 ierr = DMDASetStencilWidth(*da, s);CHKERRQ(ierr); 375 ierr = DMDASetOwnershipRanges(*da, lx, PETSC_NULL, PETSC_NULL);CHKERRQ(ierr); 376 /* This violates the behavior for other classes, but right now users expect negative dimensions to be handled this way */ 377 ierr = DMSetFromOptions(*da);CHKERRQ(ierr); 378 ierr = DMSetUp(*da);CHKERRQ(ierr); 379 ierr = DMView_DA_Private(*da);CHKERRQ(ierr); 380 PetscFunctionReturn(0); 381 } 382