xref: /petsc/src/dm/impls/da/da3.c (revision a4e35b1925eceef64945ea472b84f2bf06a67b5e)

/*
   Code for manipulating distributed regular 3d arrays in parallel.
   File created by Peter Mell  7/14/95
 */

#include <petsc/private/dmdaimpl.h> /*I   "petscdmda.h"    I*/

#include <petscdraw.h>
static PetscErrorCode DMView_DA_3d(DM da, PetscViewer viewer)
{
  PetscMPIInt rank;
  PetscBool   iascii, isdraw, isglvis, isbinary;
  DM_DA      *dd = (DM_DA *)da->data;
  Vec         coordinates;
#if defined(PETSC_HAVE_MATLAB)
  PetscBool ismatlab;
#endif

  PetscFunctionBegin;
  PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)da), &rank));

  PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERASCII, &iascii));
  PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERDRAW, &isdraw));
  PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERGLVIS, &isglvis));
  PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary));
#if defined(PETSC_HAVE_MATLAB)
  PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERMATLAB, &ismatlab));
#endif
  if (iascii) {
    PetscViewerFormat format;

    PetscCall(PetscViewerASCIIPushSynchronized(viewer));
    PetscCall(PetscViewerGetFormat(viewer, &format));
    if (format == PETSC_VIEWER_LOAD_BALANCE) {
      PetscInt      i, nmax = 0, nmin = PETSC_MAX_INT, navg = 0, *nz, nzlocal;
      DMDALocalInfo info;
      PetscMPIInt   size;
      PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)da), &size));
      PetscCall(DMDAGetLocalInfo(da, &info));
      nzlocal = info.xm * info.ym * info.zm;
      PetscCall(PetscMalloc1(size, &nz));
      PetscCallMPI(MPI_Allgather(&nzlocal, 1, MPIU_INT, nz, 1, MPIU_INT, PetscObjectComm((PetscObject)da)));
      for (i = 0; i < (PetscInt)size; i++) {
        nmax = PetscMax(nmax, nz[i]);
        nmin = PetscMin(nmin, nz[i]);
        navg += nz[i];
      }
      PetscCall(PetscFree(nz));
      navg = navg / size;
      PetscCall(PetscViewerASCIIPrintf(viewer, "  Load Balance - Grid Points: Min %" PetscInt_FMT "  avg %" PetscInt_FMT "  max %" PetscInt_FMT "\n", nmin, navg, nmax));
      PetscFunctionReturn(PETSC_SUCCESS);
    }
    if (format != PETSC_VIEWER_ASCII_VTK_DEPRECATED && format != PETSC_VIEWER_ASCII_VTK_CELL_DEPRECATED && format != PETSC_VIEWER_ASCII_GLVIS) {
      DMDALocalInfo info;
      PetscCall(DMDAGetLocalInfo(da, &info));
      PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "Processor [%d] M %" PetscInt_FMT " N %" PetscInt_FMT " P %" PetscInt_FMT " m %" PetscInt_FMT " n %" PetscInt_FMT " p %" PetscInt_FMT " w %" PetscInt_FMT " s %" PetscInt_FMT "\n", rank, dd->M, dd->N, dd->P, dd->m, dd->n, dd->p, dd->w, dd->s));
      PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "X range of indices: %" PetscInt_FMT " %" PetscInt_FMT ", Y range of indices: %" PetscInt_FMT " %" PetscInt_FMT ", Z range of indices: %" PetscInt_FMT " %" PetscInt_FMT "\n", info.xs,
                                                   info.xs + info.xm, info.ys, info.ys + info.ym, info.zs, info.zs + info.zm));
      PetscCall(DMGetCoordinates(da, &coordinates));
#if !defined(PETSC_USE_COMPLEX)
      if (coordinates) {
        PetscInt         last;
        const PetscReal *coors;
        PetscCall(VecGetArrayRead(coordinates, &coors));
        PetscCall(VecGetLocalSize(coordinates, &last));
        last = last - 3;
        PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "Lower left corner %g %g %g : Upper right %g %g %g\n", (double)coors[0], (double)coors[1], (double)coors[2], (double)coors[last], (double)coors[last + 1], (double)coors[last + 2]));
        PetscCall(VecRestoreArrayRead(coordinates, &coors));
      }
#endif
      PetscCall(PetscViewerFlush(viewer));
      PetscCall(PetscViewerASCIIPopSynchronized(viewer));
    } else if (format == PETSC_VIEWER_ASCII_GLVIS) PetscCall(DMView_DA_GLVis(da, viewer));
    else PetscCall(DMView_DA_VTK(da, viewer));
  } else if (isdraw) {
    PetscDraw       draw;
    PetscReal       ymin = -1.0, ymax = (PetscReal)dd->N;
    PetscReal       xmin = -1.0, xmax = (PetscReal)((dd->M + 2) * dd->P), x, y, ycoord, xcoord;
    PetscInt        k, plane, base;
    const PetscInt *idx;
    char            node[10];
    PetscBool       isnull;

    PetscCall(PetscViewerDrawGetDraw(viewer, 0, &draw));
    PetscCall(PetscDrawIsNull(draw, &isnull));
    if (isnull) PetscFunctionReturn(PETSC_SUCCESS);

    PetscCall(PetscDrawCheckResizedWindow(draw));
    PetscCall(PetscDrawClear(draw));
    PetscCall(PetscDrawSetCoordinates(draw, xmin, ymin, xmax, ymax));

    PetscDrawCollectiveBegin(draw);
    /* first processor draw all node lines */
    if (rank == 0) {
      for (k = 0; k < dd->P; k++) {
        ymin = 0.0;
        ymax = (PetscReal)(dd->N - 1);
        for (xmin = (PetscReal)(k * (dd->M + 1)); xmin < (PetscReal)(dd->M + (k * (dd->M + 1))); xmin++) PetscCall(PetscDrawLine(draw, xmin, ymin, xmin, ymax, PETSC_DRAW_BLACK));
        xmin = (PetscReal)(k * (dd->M + 1));
        xmax = xmin + (PetscReal)(dd->M - 1);
        for (ymin = 0; ymin < (PetscReal)dd->N; ymin++) PetscCall(PetscDrawLine(draw, xmin, ymin, xmax, ymin, PETSC_DRAW_BLACK));
      }
    }
    PetscDrawCollectiveEnd(draw);
    PetscCall(PetscDrawFlush(draw));
    PetscCall(PetscDrawPause(draw));

    PetscDrawCollectiveBegin(draw);
    /*Go through and draw for each plane*/
    for (k = 0; k < dd->P; k++) {
      if ((k >= dd->zs) && (k < dd->ze)) {
        /* draw my box */
        ymin = dd->ys;
        ymax = dd->ye - 1;
        xmin = dd->xs / dd->w + (dd->M + 1) * k;
        xmax = (dd->xe - 1) / dd->w + (dd->M + 1) * k;

        PetscCall(PetscDrawLine(draw, xmin, ymin, xmax, ymin, PETSC_DRAW_RED));
        PetscCall(PetscDrawLine(draw, xmin, ymin, xmin, ymax, PETSC_DRAW_RED));
        PetscCall(PetscDrawLine(draw, xmin, ymax, xmax, ymax, PETSC_DRAW_RED));
        PetscCall(PetscDrawLine(draw, xmax, ymin, xmax, ymax, PETSC_DRAW_RED));

        xmin = dd->xs / dd->w;
        xmax = (dd->xe - 1) / dd->w;

        /* identify which processor owns the box */
        PetscCall(PetscSNPrintf(node, sizeof(node), "%d", (int)rank));
        PetscCall(PetscDrawString(draw, xmin + (dd->M + 1) * k + .2, ymin + .3, PETSC_DRAW_RED, node));
        /* put in numbers*/
        base = (dd->base + (dd->xe - dd->xs) * (dd->ye - dd->ys) * (k - dd->zs)) / dd->w;
        for (y = ymin; y <= ymax; y++) {
          for (x = xmin + (dd->M + 1) * k; x <= xmax + (dd->M + 1) * k; x++) {
            PetscCall(PetscSNPrintf(node, sizeof(node), "%d", (int)base++));
            PetscCall(PetscDrawString(draw, x, y, PETSC_DRAW_BLACK, node));
          }
        }
      }
    }
    PetscDrawCollectiveEnd(draw);
    PetscCall(PetscDrawFlush(draw));
    PetscCall(PetscDrawPause(draw));

    PetscDrawCollectiveBegin(draw);
    for (k = 0 - dd->s; k < dd->P + dd->s; k++) {
      /* Go through and draw for each plane */
      if ((k >= dd->Zs) && (k < dd->Ze)) {
        /* overlay ghost numbers, useful for error checking */
        base = (dd->Xe - dd->Xs) * (dd->Ye - dd->Ys) * (k - dd->Zs) / dd->w;
        PetscCall(ISLocalToGlobalMappingGetBlockIndices(da->ltogmap, &idx));
        plane = k;
        /* Keep z wrap around points on the drawing */
        if (k < 0) plane = dd->P + k;
        if (k >= dd->P) plane = k - dd->P;
        ymin = dd->Ys;
        ymax = dd->Ye;
        xmin = (dd->M + 1) * plane * dd->w;
        xmax = (dd->M + 1) * plane * dd->w + dd->M * dd->w;
        for (y = ymin; y < ymax; y++) {
          for (x = xmin + dd->Xs; x < xmin + dd->Xe; x += dd->w) {
            PetscCall(PetscSNPrintf(node, PETSC_STATIC_ARRAY_LENGTH(node), "%" PetscInt_FMT, idx[base]));
            ycoord = y;
            /*Keep y wrap around points on drawing */
            if (y < 0) ycoord = dd->N + y;
            if (y >= dd->N) ycoord = y - dd->N;
            xcoord = x; /* Keep x wrap points on drawing */
            if (x < xmin) xcoord = xmax - (xmin - x);
            if (x >= xmax) xcoord = xmin + (x - xmax);
            PetscCall(PetscDrawString(draw, xcoord / dd->w, ycoord, PETSC_DRAW_BLUE, node));
            base++;
          }
        }
        PetscCall(ISLocalToGlobalMappingRestoreBlockIndices(da->ltogmap, &idx));
      }
    }
    PetscDrawCollectiveEnd(draw);
    PetscCall(PetscDrawFlush(draw));
    PetscCall(PetscDrawPause(draw));
    PetscCall(PetscDrawSave(draw));
  } else if (isglvis) {
    PetscCall(DMView_DA_GLVis(da, viewer));
  } else if (isbinary) {
    PetscCall(DMView_DA_Binary(da, viewer));
#if defined(PETSC_HAVE_MATLAB)
  } else if (ismatlab) {
    PetscCall(DMView_DA_Matlab(da, viewer));
#endif
  }
  PetscFunctionReturn(PETSC_SUCCESS);
}

PetscErrorCode DMSetUp_DA_3D(DM da)
{
  DM_DA          *dd           = (DM_DA *)da->data;
  const PetscInt  M            = dd->M;
  const PetscInt  N            = dd->N;
  const PetscInt  P            = dd->P;
  PetscInt        m            = dd->m;
  PetscInt        n            = dd->n;
  PetscInt        p            = dd->p;
  const PetscInt  dof          = dd->w;
  const PetscInt  s            = dd->s;
  DMBoundaryType  bx           = dd->bx;
  DMBoundaryType  by           = dd->by;
  DMBoundaryType  bz           = dd->bz;
  DMDAStencilType stencil_type = dd->stencil_type;
  PetscInt       *lx           = dd->lx;
  PetscInt       *ly           = dd->ly;
  PetscInt       *lz           = dd->lz;
  MPI_Comm        comm;
  PetscMPIInt     rank, size;
  PetscInt        xs = 0, xe, ys = 0, ye, zs = 0, ze, x = 0, y = 0, z = 0;
  PetscInt        Xs, Xe, Ys, Ye, Zs, Ze, IXs, IXe, IYs, IYe, IZs, IZe, pm;
  PetscInt        left, right, up, down, bottom, top, i, j, k, *idx, nn;
  PetscInt        n0, n1, n2, n3, n4, n5, n6, n7, n8, n9, n10, n11, n12, n14;
  PetscInt        n15, n16, n17, n18, n19, n20, n21, n22, n23, n24, n25, n26;
  PetscInt       *bases, *ldims, base, x_t, y_t, z_t, s_t, count, s_x, s_y, s_z;
  PetscInt        sn0 = 0, sn1 = 0, sn2 = 0, sn3 = 0, sn5 = 0, sn6 = 0, sn7 = 0;
  PetscInt        sn8 = 0, sn9 = 0, sn11 = 0, sn15 = 0, sn24 = 0, sn25 = 0, sn26 = 0;
  PetscInt        sn17 = 0, sn18 = 0, sn19 = 0, sn20 = 0, sn21 = 0, sn23 = 0;
  Vec             local, global;
  VecScatter      gtol;
  IS              to, from;
  PetscBool       twod;

  PetscFunctionBegin;
  PetscCheck(stencil_type != DMDA_STENCIL_BOX || (bx != DM_BOUNDARY_MIRROR && by != DM_BOUNDARY_MIRROR && bz != DM_BOUNDARY_MIRROR), PetscObjectComm((PetscObject)da), PETSC_ERR_SUP, "Mirror boundary and box stencil");
  PetscCall(PetscObjectGetComm((PetscObject)da, &comm));
#if !defined(PETSC_USE_64BIT_INDICES)
  PetscCheck(((PetscInt64)M) * ((PetscInt64)N) * ((PetscInt64)P) * ((PetscInt64)dof) <= (PetscInt64)PETSC_MPI_INT_MAX, comm, PETSC_ERR_INT_OVERFLOW, "Mesh of %" PetscInt_FMT " by %" PetscInt_FMT " by %" PetscInt_FMT " by %" PetscInt_FMT " (dof) is too large for 32-bit indices", M, N, P, dof);
#endif

  PetscCallMPI(MPI_Comm_size(comm, &size));
  PetscCallMPI(MPI_Comm_rank(comm, &rank));

  if (m != PETSC_DECIDE) {
    PetscCheck(m >= 1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Non-positive number of processors in X direction: %" PetscInt_FMT, m);
    PetscCheck(m <= size, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Too many processors in X direction: %" PetscInt_FMT " %d", m, size);
  }
  if (n != PETSC_DECIDE) {
    PetscCheck(n >= 1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Non-positive number of processors in Y direction: %" PetscInt_FMT, n);
    PetscCheck(n <= size, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Too many processors in Y direction: %" PetscInt_FMT " %d", n, size);
  }
  if (p != PETSC_DECIDE) {
    PetscCheck(p >= 1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Non-positive number of processors in Z direction: %" PetscInt_FMT, p);
    PetscCheck(p <= size, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Too many processors in Z direction: %" PetscInt_FMT " %d", p, size);
  }
  PetscCheck(m <= 0 || n <= 0 || p <= 0 || m * n * p == size, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "m %" PetscInt_FMT " * n %" PetscInt_FMT " * p %" PetscInt_FMT " != size %d", m, n, p, size);

  /* Partition the array among the processors */
  if (m == PETSC_DECIDE && n != PETSC_DECIDE && p != PETSC_DECIDE) {
    m = size / (n * p);
  } else if (m != PETSC_DECIDE && n == PETSC_DECIDE && p != PETSC_DECIDE) {
    n = size / (m * p);
  } else if (m != PETSC_DECIDE && n != PETSC_DECIDE && p == PETSC_DECIDE) {
    p = size / (m * n);
  } else if (m == PETSC_DECIDE && n == PETSC_DECIDE && p != PETSC_DECIDE) {
    /* try for squarish distribution */
    m = (int)(0.5 + PetscSqrtReal(((PetscReal)M) * ((PetscReal)size) / ((PetscReal)N * p)));
    if (!m) m = 1;
    while (m > 0) {
      n = size / (m * p);
      if (m * n * p == size) break;
      m--;
    }
    PetscCheck(m, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "bad p value: p = %" PetscInt_FMT, p);
    if (M > N && m < n) {
      PetscInt _m = m;
      m           = n;
      n           = _m;
    }
  } else if (m == PETSC_DECIDE && n != PETSC_DECIDE && p == PETSC_DECIDE) {
    /* try for squarish distribution */
    m = (int)(0.5 + PetscSqrtReal(((PetscReal)M) * ((PetscReal)size) / ((PetscReal)P * n)));
    if (!m) m = 1;
    while (m > 0) {
      p = size / (m * n);
      if (m * n * p == size) break;
      m--;
    }
    PetscCheck(m, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "bad n value: n = %" PetscInt_FMT, n);
    if (M > P && m < p) {
      PetscInt _m = m;
      m           = p;
      p           = _m;
    }
  } else if (m != PETSC_DECIDE && n == PETSC_DECIDE && p == PETSC_DECIDE) {
    /* try for squarish distribution */
    n = (int)(0.5 + PetscSqrtReal(((PetscReal)N) * ((PetscReal)size) / ((PetscReal)P * m)));
    if (!n) n = 1;
    while (n > 0) {
      p = size / (m * n);
      if (m * n * p == size) break;
      n--;
    }
    PetscCheck(n, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "bad m value: m = %" PetscInt_FMT, n);
    if (N > P && n < p) {
      PetscInt _n = n;
      n           = p;
      p           = _n;
    }
  } else if (m == PETSC_DECIDE && n == PETSC_DECIDE && p == PETSC_DECIDE) {
    /* try for squarish distribution */
    n = (PetscInt)(0.5 + PetscPowReal(((PetscReal)N * N) * ((PetscReal)size) / ((PetscReal)P * M), (PetscReal)(1. / 3.)));
    if (!n) n = 1;
    while (n > 0) {
      pm = size / n;
      if (n * pm == size) break;
      n--;
    }
    if (!n) n = 1;
    m = (PetscInt)(0.5 + PetscSqrtReal(((PetscReal)M) * ((PetscReal)size) / ((PetscReal)P * n)));
    if (!m) m = 1;
    while (m > 0) {
      p = size / (m * n);
      if (m * n * p == size) break;
      m--;
    }
    if (M > P && m < p) {
      PetscInt _m = m;
      m           = p;
      p           = _m;
    }
  } else PetscCheck(m * n * p == size, PetscObjectComm((PetscObject)da), PETSC_ERR_ARG_OUTOFRANGE, "Given Bad partition");

  PetscCheck(m * n * p == size, PetscObjectComm((PetscObject)da), PETSC_ERR_PLIB, "Could not find good partition");
  PetscCheck(M >= m, PetscObjectComm((PetscObject)da), PETSC_ERR_ARG_OUTOFRANGE, "Partition in x direction is too fine! %" PetscInt_FMT " %" PetscInt_FMT, M, m);
  PetscCheck(N >= n, PetscObjectComm((PetscObject)da), PETSC_ERR_ARG_OUTOFRANGE, "Partition in y direction is too fine! %" PetscInt_FMT " %" PetscInt_FMT, N, n);
  PetscCheck(P >= p, PetscObjectComm((PetscObject)da), PETSC_ERR_ARG_OUTOFRANGE, "Partition in z direction is too fine! %" PetscInt_FMT " %" PetscInt_FMT, P, p);

  /*
     Determine locally owned region
     [x, y, or z]s is the first local node number, [x, y, z] is the number of local nodes
  */

  if (!lx) {
    PetscCall(PetscMalloc1(m, &dd->lx));
    lx = dd->lx;
    for (i = 0; i < m; i++) lx[i] = M / m + ((M % m) > (i % m));
  }
  x  = lx[rank % m];
  xs = 0;
  for (i = 0; i < (rank % m); i++) xs += lx[i];
  PetscCheck(x >= s || (m <= 1 && bx != DM_BOUNDARY_PERIODIC), PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Local x-width of domain x %" PetscInt_FMT " is smaller than stencil width s %" PetscInt_FMT, x, s);

  if (!ly) {
    PetscCall(PetscMalloc1(n, &dd->ly));
    ly = dd->ly;
    for (i = 0; i < n; i++) ly[i] = N / n + ((N % n) > (i % n));
  }
  y = ly[(rank % (m * n)) / m];
  PetscCheck(y >= s || (n <= 1 && by != DM_BOUNDARY_PERIODIC), PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Local y-width of domain y %" PetscInt_FMT " is smaller than stencil width s %" PetscInt_FMT, y, s);

  ys = 0;
  for (i = 0; i < (rank % (m * n)) / m; i++) ys += ly[i];

  if (!lz) {
    PetscCall(PetscMalloc1(p, &dd->lz));
    lz = dd->lz;
    for (i = 0; i < p; i++) lz[i] = P / p + ((P % p) > (i % p));
  }
  z = lz[rank / (m * n)];

  /* note this is different than x- and y-, as we will handle as an important special
   case when p=P=1 and DM_BOUNDARY_PERIODIC and s > z.  This is to deal with 2D problems
   in a 3D code.  Additional code for this case is noted with "2d case" comments */
  twod = PETSC_FALSE;
  if (P == 1) twod = PETSC_TRUE;
  else PetscCheck(z >= s || (p <= 1 && bz != DM_BOUNDARY_PERIODIC), PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Local z-width of domain z %" PetscInt_FMT " is smaller than stencil width s %" PetscInt_FMT, z, s);
  zs = 0;
  for (i = 0; i < (rank / (m * n)); i++) zs += lz[i];
  ye = ys + y;
  xe = xs + x;
  ze = zs + z;

  /* determine ghost region (Xs) and region scattered into (IXs)  */
  if (xs - s > 0) {
    Xs  = xs - s;
    IXs = xs - s;
  } else {
    if (bx) Xs = xs - s;
    else Xs = 0;
    IXs = 0;
  }
  if (xe + s <= M) {
    Xe  = xe + s;
    IXe = xe + s;
  } else {
    if (bx) {
      Xs = xs - s;
      Xe = xe + s;
    } else Xe = M;
    IXe = M;
  }

  if (bx == DM_BOUNDARY_PERIODIC || bx == DM_BOUNDARY_MIRROR) {
    IXs = xs - s;
    IXe = xe + s;
    Xs  = xs - s;
    Xe  = xe + s;
  }

  if (ys - s > 0) {
    Ys  = ys - s;
    IYs = ys - s;
  } else {
    if (by) Ys = ys - s;
    else Ys = 0;
    IYs = 0;
  }
  if (ye + s <= N) {
    Ye  = ye + s;
    IYe = ye + s;
  } else {
    if (by) Ye = ye + s;
    else Ye = N;
    IYe = N;
  }

  if (by == DM_BOUNDARY_PERIODIC || by == DM_BOUNDARY_MIRROR) {
    IYs = ys - s;
    IYe = ye + s;
    Ys  = ys - s;
    Ye  = ye + s;
  }

  if (zs - s > 0) {
    Zs  = zs - s;
    IZs = zs - s;
  } else {
    if (bz) Zs = zs - s;
    else Zs = 0;
    IZs = 0;
  }
  if (ze + s <= P) {
    Ze  = ze + s;
    IZe = ze + s;
  } else {
    if (bz) Ze = ze + s;
    else Ze = P;
    IZe = P;
  }

  if (bz == DM_BOUNDARY_PERIODIC || bz == DM_BOUNDARY_MIRROR) {
    IZs = zs - s;
    IZe = ze + s;
    Zs  = zs - s;
    Ze  = ze + s;
  }

  /* Resize all X parameters to reflect w */
  s_x = s;
  s_y = s;
  s_z = s;

  /* determine starting point of each processor */
  nn = x * y * z;
  PetscCall(PetscMalloc2(size + 1, &bases, size, &ldims));
  PetscCallMPI(MPI_Allgather(&nn, 1, MPIU_INT, ldims, 1, MPIU_INT, comm));
  bases[0] = 0;
  for (i = 1; i <= size; i++) bases[i] = ldims[i - 1];
  for (i = 1; i <= size; i++) bases[i] += bases[i - 1];
  base = bases[rank] * dof;

  /* allocate the base parallel and sequential vectors */
  dd->Nlocal = x * y * z * dof;
  PetscCall(VecCreateMPIWithArray(comm, dof, dd->Nlocal, PETSC_DECIDE, NULL, &global));
  dd->nlocal = (Xe - Xs) * (Ye - Ys) * (Ze - Zs) * dof;
  PetscCall(VecCreateSeqWithArray(PETSC_COMM_SELF, dof, dd->nlocal, NULL, &local));

  /* generate global to local vector scatter and local to global mapping*/

  /* global to local must include ghost points within the domain,
     but not ghost points outside the domain that aren't periodic */
  PetscCall(PetscMalloc1((IXe - IXs) * (IYe - IYs) * (IZe - IZs), &idx));
  if (stencil_type == DMDA_STENCIL_BOX) {
    left   = IXs - Xs;
    right  = left + (IXe - IXs);
    bottom = IYs - Ys;
    top    = bottom + (IYe - IYs);
    down   = IZs - Zs;
    up     = down + (IZe - IZs);
    count  = 0;
    for (i = down; i < up; i++) {
      for (j = bottom; j < top; j++) {
        for (k = left; k < right; k++) idx[count++] = (i * (Ye - Ys) + j) * (Xe - Xs) + k;
      }
    }
    PetscCall(ISCreateBlock(comm, dof, count, idx, PETSC_OWN_POINTER, &to));
  } else {
    /* This is way ugly! We need to list the funny cross type region */
    left   = xs - Xs;
    right  = left + x;
    bottom = ys - Ys;
    top    = bottom + y;
    down   = zs - Zs;
    up     = down + z;
    count  = 0;
    /* the bottom chunk */
    for (i = (IZs - Zs); i < down; i++) {
      for (j = bottom; j < top; j++) {
        for (k = left; k < right; k++) idx[count++] = (i * (Ye - Ys) + j) * (Xe - Xs) + k;
      }
    }
    /* the middle piece */
    for (i = down; i < up; i++) {
      /* front */
      for (j = (IYs - Ys); j < bottom; j++) {
        for (k = left; k < right; k++) idx[count++] = (i * (Ye - Ys) + j) * (Xe - Xs) + k;
      }
      /* middle */
      for (j = bottom; j < top; j++) {
        for (k = IXs - Xs; k < IXe - Xs; k++) idx[count++] = (i * (Ye - Ys) + j) * (Xe - Xs) + k;
      }
      /* back */
      for (j = top; j < top + IYe - ye; j++) {
        for (k = left; k < right; k++) idx[count++] = (i * (Ye - Ys) + j) * (Xe - Xs) + k;
      }
    }
    /* the top piece */
    for (i = up; i < up + IZe - ze; i++) {
      for (j = bottom; j < top; j++) {
        for (k = left; k < right; k++) idx[count++] = (i * (Ye - Ys) + j) * (Xe - Xs) + k;
      }
    }
    PetscCall(ISCreateBlock(comm, dof, count, idx, PETSC_OWN_POINTER, &to));
  }

  /* determine who lies on each side of use stored in    n24 n25 n26
                                                         n21 n22 n23
                                                         n18 n19 n20

                                                         n15 n16 n17
                                                         n12     n14
                                                         n9  n10 n11

                                                         n6  n7  n8
                                                         n3  n4  n5
                                                         n0  n1  n2
  */

  /* Solve for X,Y, and Z Periodic Case First, Then Modify Solution */
  /* Assume Nodes are Internal to the Cube */
  n0 = rank - m * n - m - 1;
  n1 = rank - m * n - m;
  n2 = rank - m * n - m + 1;
  n3 = rank - m * n - 1;
  n4 = rank - m * n;
  n5 = rank - m * n + 1;
  n6 = rank - m * n + m - 1;
  n7 = rank - m * n + m;
  n8 = rank - m * n + m + 1;

  n9  = rank - m - 1;
  n10 = rank - m;
  n11 = rank - m + 1;
  n12 = rank - 1;
  n14 = rank + 1;
  n15 = rank + m - 1;
  n16 = rank + m;
  n17 = rank + m + 1;

  n18 = rank + m * n - m - 1;
  n19 = rank + m * n - m;
  n20 = rank + m * n - m + 1;
  n21 = rank + m * n - 1;
  n22 = rank + m * n;
  n23 = rank + m * n + 1;
  n24 = rank + m * n + m - 1;
  n25 = rank + m * n + m;
  n26 = rank + m * n + m + 1;

  /* Assume Pieces are on Faces of Cube */

  if (xs == 0) { /* First assume not corner or edge */
    n0  = rank - 1 - (m * n);
    n3  = rank + m - 1 - (m * n);
    n6  = rank + 2 * m - 1 - (m * n);
    n9  = rank - 1;
    n12 = rank + m - 1;
    n15 = rank + 2 * m - 1;
    n18 = rank - 1 + (m * n);
    n21 = rank + m - 1 + (m * n);
    n24 = rank + 2 * m - 1 + (m * n);
  }

  if (xe == M) { /* First assume not corner or edge */
    n2  = rank - 2 * m + 1 - (m * n);
    n5  = rank - m + 1 - (m * n);
    n8  = rank + 1 - (m * n);
    n11 = rank - 2 * m + 1;
    n14 = rank - m + 1;
    n17 = rank + 1;
    n20 = rank - 2 * m + 1 + (m * n);
    n23 = rank - m + 1 + (m * n);
    n26 = rank + 1 + (m * n);
  }

  if (ys == 0) { /* First assume not corner or edge */
    n0  = rank + m * (n - 1) - 1 - (m * n);
    n1  = rank + m * (n - 1) - (m * n);
    n2  = rank + m * (n - 1) + 1 - (m * n);
    n9  = rank + m * (n - 1) - 1;
    n10 = rank + m * (n - 1);
    n11 = rank + m * (n - 1) + 1;
    n18 = rank + m * (n - 1) - 1 + (m * n);
    n19 = rank + m * (n - 1) + (m * n);
    n20 = rank + m * (n - 1) + 1 + (m * n);
  }

  if (ye == N) { /* First assume not corner or edge */
    n6  = rank - m * (n - 1) - 1 - (m * n);
    n7  = rank - m * (n - 1) - (m * n);
    n8  = rank - m * (n - 1) + 1 - (m * n);
    n15 = rank - m * (n - 1) - 1;
    n16 = rank - m * (n - 1);
    n17 = rank - m * (n - 1) + 1;
    n24 = rank - m * (n - 1) - 1 + (m * n);
    n25 = rank - m * (n - 1) + (m * n);
    n26 = rank - m * (n - 1) + 1 + (m * n);
  }

  if (zs == 0) { /* First assume not corner or edge */
    n0 = size - (m * n) + rank - m - 1;
    n1 = size - (m * n) + rank - m;
    n2 = size - (m * n) + rank - m + 1;
    n3 = size - (m * n) + rank - 1;
    n4 = size - (m * n) + rank;
    n5 = size - (m * n) + rank + 1;
    n6 = size - (m * n) + rank + m - 1;
    n7 = size - (m * n) + rank + m;
    n8 = size - (m * n) + rank + m + 1;
  }

  if (ze == P) { /* First assume not corner or edge */
    n18 = (m * n) - (size - rank) - m - 1;
    n19 = (m * n) - (size - rank) - m;
    n20 = (m * n) - (size - rank) - m + 1;
    n21 = (m * n) - (size - rank) - 1;
    n22 = (m * n) - (size - rank);
    n23 = (m * n) - (size - rank) + 1;
    n24 = (m * n) - (size - rank) + m - 1;
    n25 = (m * n) - (size - rank) + m;
    n26 = (m * n) - (size - rank) + m + 1;
  }

  if ((xs == 0) && (zs == 0)) { /* Assume an edge, not corner */
    n0 = size - m * n + rank + m - 1 - m;
    n3 = size - m * n + rank + m - 1;
    n6 = size - m * n + rank + m - 1 + m;
  }

  if ((xs == 0) && (ze == P)) { /* Assume an edge, not corner */
    n18 = m * n - (size - rank) + m - 1 - m;
    n21 = m * n - (size - rank) + m - 1;
    n24 = m * n - (size - rank) + m - 1 + m;
  }

  if ((xs == 0) && (ys == 0)) { /* Assume an edge, not corner */
    n0  = rank + m * n - 1 - m * n;
    n9  = rank + m * n - 1;
    n18 = rank + m * n - 1 + m * n;
  }

  if ((xs == 0) && (ye == N)) { /* Assume an edge, not corner */
    n6  = rank - m * (n - 1) + m - 1 - m * n;
    n15 = rank - m * (n - 1) + m - 1;
    n24 = rank - m * (n - 1) + m - 1 + m * n;
  }

  if ((xe == M) && (zs == 0)) { /* Assume an edge, not corner */
    n2 = size - (m * n - rank) - (m - 1) - m;
    n5 = size - (m * n - rank) - (m - 1);
    n8 = size - (m * n - rank) - (m - 1) + m;
  }

  if ((xe == M) && (ze == P)) { /* Assume an edge, not corner */
    n20 = m * n - (size - rank) - (m - 1) - m;
    n23 = m * n - (size - rank) - (m - 1);
    n26 = m * n - (size - rank) - (m - 1) + m;
  }

  if ((xe == M) && (ys == 0)) { /* Assume an edge, not corner */
    n2  = rank + m * (n - 1) - (m - 1) - m * n;
    n11 = rank + m * (n - 1) - (m - 1);
    n20 = rank + m * (n - 1) - (m - 1) + m * n;
  }

  if ((xe == M) && (ye == N)) { /* Assume an edge, not corner */
    n8  = rank - m * n + 1 - m * n;
    n17 = rank - m * n + 1;
    n26 = rank - m * n + 1 + m * n;
  }

  if ((ys == 0) && (zs == 0)) { /* Assume an edge, not corner */
    n0 = size - m + rank - 1;
    n1 = size - m + rank;
    n2 = size - m + rank + 1;
  }

  if ((ys == 0) && (ze == P)) { /* Assume an edge, not corner */
    n18 = m * n - (size - rank) + m * (n - 1) - 1;
    n19 = m * n - (size - rank) + m * (n - 1);
    n20 = m * n - (size - rank) + m * (n - 1) + 1;
  }

  if ((ye == N) && (zs == 0)) { /* Assume an edge, not corner */
    n6 = size - (m * n - rank) - m * (n - 1) - 1;
    n7 = size - (m * n - rank) - m * (n - 1);
    n8 = size - (m * n - rank) - m * (n - 1) + 1;
  }

  if ((ye == N) && (ze == P)) { /* Assume an edge, not corner */
    n24 = rank - (size - m) - 1;
    n25 = rank - (size - m);
    n26 = rank - (size - m) + 1;
  }

  /* Check for Corners */
  if ((xs == 0) && (ys == 0) && (zs == 0)) n0 = size - 1;
  if ((xs == 0) && (ys == 0) && (ze == P)) n18 = m * n - 1;
  if ((xs == 0) && (ye == N) && (zs == 0)) n6 = (size - 1) - m * (n - 1);
  if ((xs == 0) && (ye == N) && (ze == P)) n24 = m - 1;
  if ((xe == M) && (ys == 0) && (zs == 0)) n2 = size - m;
  if ((xe == M) && (ys == 0) && (ze == P)) n20 = m * n - m;
  if ((xe == M) && (ye == N) && (zs == 0)) n8 = size - m * n;
  if ((xe == M) && (ye == N) && (ze == P)) n26 = 0;

  /* Check for when not X,Y, and Z Periodic */

  /* If not X periodic */
  if (bx != DM_BOUNDARY_PERIODIC) {
    if (xs == 0) n0 = n3 = n6 = n9 = n12 = n15 = n18 = n21 = n24 = -2;
    if (xe == M) n2 = n5 = n8 = n11 = n14 = n17 = n20 = n23 = n26 = -2;
  }

  /* If not Y periodic */
  if (by != DM_BOUNDARY_PERIODIC) {
    if (ys == 0) n0 = n1 = n2 = n9 = n10 = n11 = n18 = n19 = n20 = -2;
    if (ye == N) n6 = n7 = n8 = n15 = n16 = n17 = n24 = n25 = n26 = -2;
  }

  /* If not Z periodic */
  if (bz != DM_BOUNDARY_PERIODIC) {
    if (zs == 0) n0 = n1 = n2 = n3 = n4 = n5 = n6 = n7 = n8 = -2;
    if (ze == P) n18 = n19 = n20 = n21 = n22 = n23 = n24 = n25 = n26 = -2;
  }

  PetscCall(PetscMalloc1(27, &dd->neighbors));

  dd->neighbors[0]  = n0;
  dd->neighbors[1]  = n1;
  dd->neighbors[2]  = n2;
  dd->neighbors[3]  = n3;
  dd->neighbors[4]  = n4;
  dd->neighbors[5]  = n5;
  dd->neighbors[6]  = n6;
  dd->neighbors[7]  = n7;
  dd->neighbors[8]  = n8;
  dd->neighbors[9]  = n9;
  dd->neighbors[10] = n10;
  dd->neighbors[11] = n11;
  dd->neighbors[12] = n12;
  dd->neighbors[13] = rank;
  dd->neighbors[14] = n14;
  dd->neighbors[15] = n15;
  dd->neighbors[16] = n16;
  dd->neighbors[17] = n17;
  dd->neighbors[18] = n18;
  dd->neighbors[19] = n19;
  dd->neighbors[20] = n20;
  dd->neighbors[21] = n21;
  dd->neighbors[22] = n22;
  dd->neighbors[23] = n23;
  dd->neighbors[24] = n24;
  dd->neighbors[25] = n25;
  dd->neighbors[26] = n26;

  /* If star stencil then delete the corner neighbors */
  if (stencil_type == DMDA_STENCIL_STAR) {
    /* save information about corner neighbors */
    sn0  = n0;
    sn1  = n1;
    sn2  = n2;
    sn3  = n3;
    sn5  = n5;
    sn6  = n6;
    sn7  = n7;
    sn8  = n8;
    sn9  = n9;
    sn11 = n11;
    sn15 = n15;
    sn17 = n17;
    sn18 = n18;
    sn19 = n19;
    sn20 = n20;
    sn21 = n21;
    sn23 = n23;
    sn24 = n24;
    sn25 = n25;
    sn26 = n26;
    n0 = n1 = n2 = n3 = n5 = n6 = n7 = n8 = n9 = n11 = n15 = n17 = n18 = n19 = n20 = n21 = n23 = n24 = n25 = n26 = -1;
  }

  PetscCall(PetscMalloc1((Xe - Xs) * (Ye - Ys) * (Ze - Zs), &idx));

  nn = 0;
  /* Bottom Level */
  for (k = 0; k < s_z; k++) {
    for (i = 1; i <= s_y; i++) {
      if (n0 >= 0) { /* left below */
        x_t = lx[n0 % m];
        y_t = ly[(n0 % (m * n)) / m];
        z_t = lz[n0 / (m * n)];
        s_t = bases[n0] + x_t * y_t * z_t - (s_y - i) * x_t - s_x - (s_z - k - 1) * x_t * y_t;
        if (twod && (s_t < 0)) s_t = bases[n0] + x_t * y_t * z_t - (s_y - i) * x_t - s_x; /* 2D case */
        for (j = 0; j < s_x; j++) idx[nn++] = s_t++;
      }
      if (n1 >= 0) { /* directly below */
        x_t = x;
        y_t = ly[(n1 % (m * n)) / m];
        z_t = lz[n1 / (m * n)];
        s_t = bases[n1] + x_t * y_t * z_t - (s_y + 1 - i) * x_t - (s_z - k - 1) * x_t * y_t;
        if (twod && (s_t < 0)) s_t = bases[n1] + x_t * y_t * z_t - (s_y + 1 - i) * x_t; /* 2D case */
        for (j = 0; j < x_t; j++) idx[nn++] = s_t++;
      }
      if (n2 >= 0) { /* right below */
        x_t = lx[n2 % m];
        y_t = ly[(n2 % (m * n)) / m];
        z_t = lz[n2 / (m * n)];
        s_t = bases[n2] + x_t * y_t * z_t - (s_y + 1 - i) * x_t - (s_z - k - 1) * x_t * y_t;
        if (twod && (s_t < 0)) s_t = bases[n2] + x_t * y_t * z_t - (s_y + 1 - i) * x_t; /* 2D case */
        for (j = 0; j < s_x; j++) idx[nn++] = s_t++;
      }
    }

    for (i = 0; i < y; i++) {
      if (n3 >= 0) { /* directly left */
        x_t = lx[n3 % m];
        y_t = y;
        z_t = lz[n3 / (m * n)];
        s_t = bases[n3] + (i + 1) * x_t - s_x + x_t * y_t * z_t - (s_z - k) * x_t * y_t;
        if (twod && (s_t < 0)) s_t = bases[n3] + (i + 1) * x_t - s_x + x_t * y_t * z_t - x_t * y_t; /* 2D case */
        for (j = 0; j < s_x; j++) idx[nn++] = s_t++;
      }

      if (n4 >= 0) { /* middle */
        x_t = x;
        y_t = y;
        z_t = lz[n4 / (m * n)];
        s_t = bases[n4] + i * x_t + x_t * y_t * z_t - (s_z - k) * x_t * y_t;
        if (twod && (s_t < 0)) s_t = bases[n4] + i * x_t + x_t * y_t * z_t - x_t * y_t; /* 2D case */
        for (j = 0; j < x_t; j++) idx[nn++] = s_t++;
      } else if (bz == DM_BOUNDARY_MIRROR) {
        for (j = 0; j < x; j++) idx[nn++] = bases[rank] + j + x * i + (s_z - k - 1) * x * y;
      }

      if (n5 >= 0) { /* directly right */
        x_t = lx[n5 % m];
        y_t = y;
        z_t = lz[n5 / (m * n)];
        s_t = bases[n5] + i * x_t + x_t * y_t * z_t - (s_z - k) * x_t * y_t;
        if (twod && (s_t < 0)) s_t = bases[n5] + i * x_t + x_t * y_t * z_t - x_t * y_t; /* 2D case */
        for (j = 0; j < s_x; j++) idx[nn++] = s_t++;
      }
    }

    for (i = 1; i <= s_y; i++) {
      if (n6 >= 0) { /* left above */
        x_t = lx[n6 % m];
        y_t = ly[(n6 % (m * n)) / m];
        z_t = lz[n6 / (m * n)];
        s_t = bases[n6] + i * x_t - s_x + x_t * y_t * z_t - (s_z - k) * x_t * y_t;
        if (twod && (s_t < 0)) s_t = bases[n6] + i * x_t - s_x + x_t * y_t * z_t - x_t * y_t; /* 2D case */
        for (j = 0; j < s_x; j++) idx[nn++] = s_t++;
      }
      if (n7 >= 0) { /* directly above */
        x_t = x;
        y_t = ly[(n7 % (m * n)) / m];
        z_t = lz[n7 / (m * n)];
        s_t = bases[n7] + (i - 1) * x_t + x_t * y_t * z_t - (s_z - k) * x_t * y_t;
        if (twod && (s_t < 0)) s_t = bases[n7] + (i - 1) * x_t + x_t * y_t * z_t - x_t * y_t; /* 2D case */
        for (j = 0; j < x_t; j++) idx[nn++] = s_t++;
      }
      if (n8 >= 0) { /* right above */
        x_t = lx[n8 % m];
        y_t = ly[(n8 % (m * n)) / m];
        z_t = lz[n8 / (m * n)];
        s_t = bases[n8] + (i - 1) * x_t + x_t * y_t * z_t - (s_z - k) * x_t * y_t;
        if (twod && (s_t < 0)) s_t = bases[n8] + (i - 1) * x_t + x_t * y_t * z_t - x_t * y_t; /* 2D case */
        for (j = 0; j < s_x; j++) idx[nn++] = s_t++;
      }
    }
  }

  /* Middle Level */
  for (k = 0; k < z; k++) {
    for (i = 1; i <= s_y; i++) {
      if (n9 >= 0) { /* left below */
        x_t = lx[n9 % m];
        y_t = ly[(n9 % (m * n)) / m];
        /* z_t = z; */
        s_t = bases[n9] - (s_y - i) * x_t - s_x + (k + 1) * x_t * y_t;
        for (j = 0; j < s_x; j++) idx[nn++] = s_t++;
      }
      if (n10 >= 0) { /* directly below */
        x_t = x;
        y_t = ly[(n10 % (m * n)) / m];
        /* z_t = z; */
        s_t = bases[n10] - (s_y + 1 - i) * x_t + (k + 1) * x_t * y_t;
        for (j = 0; j < x_t; j++) idx[nn++] = s_t++;
      } else if (by == DM_BOUNDARY_MIRROR) {
        for (j = 0; j < x; j++) idx[nn++] = bases[rank] + j + k * x * y + (s_y - i) * x;
      }
      if (n11 >= 0) { /* right below */
        x_t = lx[n11 % m];
        y_t = ly[(n11 % (m * n)) / m];
        /* z_t = z; */
        s_t = bases[n11] - (s_y + 1 - i) * x_t + (k + 1) * x_t * y_t;
        for (j = 0; j < s_x; j++) idx[nn++] = s_t++;
      }
    }

    for (i = 0; i < y; i++) {
      if (n12 >= 0) { /* directly left */
        x_t = lx[n12 % m];
        y_t = y;
        /* z_t = z; */
        s_t = bases[n12] + (i + 1) * x_t - s_x + k * x_t * y_t;
        for (j = 0; j < s_x; j++) idx[nn++] = s_t++;
      } else if (bx == DM_BOUNDARY_MIRROR) {
        for (j = 0; j < s_x; j++) idx[nn++] = bases[rank] + s_x - j - 1 + k * x * y + i * x;
      }

      /* Interior */
      s_t = bases[rank] + i * x + k * x * y;
      for (j = 0; j < x; j++) idx[nn++] = s_t++;

      if (n14 >= 0) { /* directly right */
        x_t = lx[n14 % m];
        y_t = y;
        /* z_t = z; */
        s_t = bases[n14] + i * x_t + k * x_t * y_t;
        for (j = 0; j < s_x; j++) idx[nn++] = s_t++;
      } else if (bx == DM_BOUNDARY_MIRROR) {
        for (j = 0; j < s_x; j++) idx[nn++] = bases[rank] + x - j - 1 + k * x * y + i * x;
      }
    }

    for (i = 1; i <= s_y; i++) {
      if (n15 >= 0) { /* left above */
        x_t = lx[n15 % m];
        y_t = ly[(n15 % (m * n)) / m];
        /* z_t = z; */
        s_t = bases[n15] + i * x_t - s_x + k * x_t * y_t;
        for (j = 0; j < s_x; j++) idx[nn++] = s_t++;
      }
      if (n16 >= 0) { /* directly above */
        x_t = x;
        y_t = ly[(n16 % (m * n)) / m];
        /* z_t = z; */
        s_t = bases[n16] + (i - 1) * x_t + k * x_t * y_t;
        for (j = 0; j < x_t; j++) idx[nn++] = s_t++;
      } else if (by == DM_BOUNDARY_MIRROR) {
        for (j = 0; j < x; j++) idx[nn++] = bases[rank] + j + k * x * y + (y - i) * x;
      }
      if (n17 >= 0) { /* right above */
        x_t = lx[n17 % m];
        y_t = ly[(n17 % (m * n)) / m];
        /* z_t = z; */
        s_t = bases[n17] + (i - 1) * x_t + k * x_t * y_t;
        for (j = 0; j < s_x; j++) idx[nn++] = s_t++;
      }
    }
  }

  /* Upper Level */
  for (k = 0; k < s_z; k++) {
    for (i = 1; i <= s_y; i++) {
      if (n18 >= 0) { /* left below */
        x_t = lx[n18 % m];
        y_t = ly[(n18 % (m * n)) / m];
        /* z_t = lz[n18 / (m*n)]; */
        s_t = bases[n18] - (s_y - i) * x_t - s_x + (k + 1) * x_t * y_t;
        if (twod && (s_t >= M * N * P)) s_t = bases[n18] - (s_y - i) * x_t - s_x + x_t * y_t; /* 2d case */
        for (j = 0; j < s_x; j++) idx[nn++] = s_t++;
      }
      if (n19 >= 0) { /* directly below */
        x_t = x;
        y_t = ly[(n19 % (m * n)) / m];
        /* z_t = lz[n19 / (m*n)]; */
        s_t = bases[n19] - (s_y + 1 - i) * x_t + (k + 1) * x_t * y_t;
        if (twod && (s_t >= M * N * P)) s_t = bases[n19] - (s_y + 1 - i) * x_t + x_t * y_t; /* 2d case */
        for (j = 0; j < x_t; j++) idx[nn++] = s_t++;
      }
      if (n20 >= 0) { /* right below */
        x_t = lx[n20 % m];
        y_t = ly[(n20 % (m * n)) / m];
        /* z_t = lz[n20 / (m*n)]; */
        s_t = bases[n20] - (s_y + 1 - i) * x_t + (k + 1) * x_t * y_t;
        if (twod && (s_t >= M * N * P)) s_t = bases[n20] - (s_y + 1 - i) * x_t + x_t * y_t; /* 2d case */
        for (j = 0; j < s_x; j++) idx[nn++] = s_t++;
      }
    }

    for (i = 0; i < y; i++) {
      if (n21 >= 0) { /* directly left */
        x_t = lx[n21 % m];
        y_t = y;
        /* z_t = lz[n21 / (m*n)]; */
        s_t = bases[n21] + (i + 1) * x_t - s_x + k * x_t * y_t;
        if (twod && (s_t >= M * N * P)) s_t = bases[n21] + (i + 1) * x_t - s_x; /* 2d case */
        for (j = 0; j < s_x; j++) idx[nn++] = s_t++;
      }

      if (n22 >= 0) { /* middle */
        x_t = x;
        y_t = y;
        /* z_t = lz[n22 / (m*n)]; */
        s_t = bases[n22] + i * x_t + k * x_t * y_t;
        if (twod && (s_t >= M * N * P)) s_t = bases[n22] + i * x_t; /* 2d case */
        for (j = 0; j < x_t; j++) idx[nn++] = s_t++;
      } else if (bz == DM_BOUNDARY_MIRROR) {
        for (j = 0; j < x; j++) idx[nn++] = bases[rank] + j + (z - k - 1) * x * y + i * x;
      }

      if (n23 >= 0) { /* directly right */
        x_t = lx[n23 % m];
        y_t = y;
        /* z_t = lz[n23 / (m*n)]; */
        s_t = bases[n23] + i * x_t + k * x_t * y_t;
        if (twod && (s_t >= M * N * P)) s_t = bases[n23] + i * x_t; /* 2d case */
        for (j = 0; j < s_x; j++) idx[nn++] = s_t++;
      }
    }

    for (i = 1; i <= s_y; i++) {
      if (n24 >= 0) { /* left above */
        x_t = lx[n24 % m];
        y_t = ly[(n24 % (m * n)) / m];
        /* z_t = lz[n24 / (m*n)]; */
        s_t = bases[n24] + i * x_t - s_x + k * x_t * y_t;
        if (twod && (s_t >= M * N * P)) s_t = bases[n24] + i * x_t - s_x; /* 2d case */
        for (j = 0; j < s_x; j++) idx[nn++] = s_t++;
      }
      if (n25 >= 0) { /* directly above */
        x_t = x;
        y_t = ly[(n25 % (m * n)) / m];
        /* z_t = lz[n25 / (m*n)]; */
        s_t = bases[n25] + (i - 1) * x_t + k * x_t * y_t;
        if (twod && (s_t >= M * N * P)) s_t = bases[n25] + (i - 1) * x_t; /* 2d case */
        for (j = 0; j < x_t; j++) idx[nn++] = s_t++;
      }
      if (n26 >= 0) { /* right above */
        x_t = lx[n26 % m];
        y_t = ly[(n26 % (m * n)) / m];
        /* z_t = lz[n26 / (m*n)]; */
        s_t = bases[n26] + (i - 1) * x_t + k * x_t * y_t;
        if (twod && (s_t >= M * N * P)) s_t = bases[n26] + (i - 1) * x_t; /* 2d case */
        for (j = 0; j < s_x; j++) idx[nn++] = s_t++;
      }
    }
  }

  PetscCall(ISCreateBlock(comm, dof, nn, idx, PETSC_USE_POINTER, &from));
  PetscCall(VecScatterCreate(global, from, local, to, &gtol));
  PetscCall(ISDestroy(&to));
  PetscCall(ISDestroy(&from));

  if (stencil_type == DMDA_STENCIL_STAR) {
    n0  = sn0;
    n1  = sn1;
    n2  = sn2;
    n3  = sn3;
    n5  = sn5;
    n6  = sn6;
    n7  = sn7;
    n8  = sn8;
    n9  = sn9;
    n11 = sn11;
    n15 = sn15;
    n17 = sn17;
    n18 = sn18;
    n19 = sn19;
    n20 = sn20;
    n21 = sn21;
    n23 = sn23;
    n24 = sn24;
    n25 = sn25;
    n26 = sn26;
  }

  if (((stencil_type == DMDA_STENCIL_STAR) || (bx != DM_BOUNDARY_PERIODIC && bx) || (by != DM_BOUNDARY_PERIODIC && by) || (bz != DM_BOUNDARY_PERIODIC && bz))) {
    /*
        Recompute the local to global mappings, this time keeping the
      information about the cross corner processor numbers.
    */
    nn = 0;
    /* Bottom Level */
    for (k = 0; k < s_z; k++) {
      for (i = 1; i <= s_y; i++) {
        if (n0 >= 0) { /* left below */
          x_t = lx[n0 % m];
          y_t = ly[(n0 % (m * n)) / m];
          z_t = lz[n0 / (m * n)];
          s_t = bases[n0] + x_t * y_t * z_t - (s_y - i) * x_t - s_x - (s_z - k - 1) * x_t * y_t;
          for (j = 0; j < s_x; j++) idx[nn++] = s_t++;
        } else if (Xs - xs < 0 && Ys - ys < 0 && Zs - zs < 0) {
          for (j = 0; j < s_x; j++) idx[nn++] = -1;
        }
        if (n1 >= 0) { /* directly below */
          x_t = x;
          y_t = ly[(n1 % (m * n)) / m];
          z_t = lz[n1 / (m * n)];
          s_t = bases[n1] + x_t * y_t * z_t - (s_y + 1 - i) * x_t - (s_z - k - 1) * x_t * y_t;
          for (j = 0; j < x_t; j++) idx[nn++] = s_t++;
        } else if (Ys - ys < 0 && Zs - zs < 0) {
          for (j = 0; j < x; j++) idx[nn++] = -1;
        }
        if (n2 >= 0) { /* right below */
          x_t = lx[n2 % m];
          y_t = ly[(n2 % (m * n)) / m];
          z_t = lz[n2 / (m * n)];
          s_t = bases[n2] + x_t * y_t * z_t - (s_y + 1 - i) * x_t - (s_z - k - 1) * x_t * y_t;
          for (j = 0; j < s_x; j++) idx[nn++] = s_t++;
        } else if (xe - Xe < 0 && Ys - ys < 0 && Zs - zs < 0) {
          for (j = 0; j < s_x; j++) idx[nn++] = -1;
        }
      }

      for (i = 0; i < y; i++) {
        if (n3 >= 0) { /* directly left */
          x_t = lx[n3 % m];
          y_t = y;
          z_t = lz[n3 / (m * n)];
          s_t = bases[n3] + (i + 1) * x_t - s_x + x_t * y_t * z_t - (s_z - k) * x_t * y_t;
          for (j = 0; j < s_x; j++) idx[nn++] = s_t++;
        } else if (Xs - xs < 0 && Zs - zs < 0) {
          for (j = 0; j < s_x; j++) idx[nn++] = -1;
        }

        if (n4 >= 0) { /* middle */
          x_t = x;
          y_t = y;
          z_t = lz[n4 / (m * n)];
          s_t = bases[n4] + i * x_t + x_t * y_t * z_t - (s_z - k) * x_t * y_t;
          for (j = 0; j < x_t; j++) idx[nn++] = s_t++;
        } else if (Zs - zs < 0) {
          if (bz == DM_BOUNDARY_MIRROR) {
            for (j = 0; j < x; j++) idx[nn++] = bases[rank] + j + x * i + (s_z - k - 1) * x * y;
          } else {
            for (j = 0; j < x; j++) idx[nn++] = -1;
          }
        }

        if (n5 >= 0) { /* directly right */
          x_t = lx[n5 % m];
          y_t = y;
          z_t = lz[n5 / (m * n)];
          s_t = bases[n5] + i * x_t + x_t * y_t * z_t - (s_z - k) * x_t * y_t;
          for (j = 0; j < s_x; j++) idx[nn++] = s_t++;
        } else if (xe - Xe < 0 && Zs - zs < 0) {
          for (j = 0; j < s_x; j++) idx[nn++] = -1;
        }
      }

      for (i = 1; i <= s_y; i++) {
        if (n6 >= 0) { /* left above */
          x_t = lx[n6 % m];
          y_t = ly[(n6 % (m * n)) / m];
          z_t = lz[n6 / (m * n)];
          s_t = bases[n6] + i * x_t - s_x + x_t * y_t * z_t - (s_z - k) * x_t * y_t;
          for (j = 0; j < s_x; j++) idx[nn++] = s_t++;
        } else if (Xs - xs < 0 && ye - Ye < 0 && Zs - zs < 0) {
          for (j = 0; j < s_x; j++) idx[nn++] = -1;
        }
        if (n7 >= 0) { /* directly above */
          x_t = x;
          y_t = ly[(n7 % (m * n)) / m];
          z_t = lz[n7 / (m * n)];
          s_t = bases[n7] + (i - 1) * x_t + x_t * y_t * z_t - (s_z - k) * x_t * y_t;
          for (j = 0; j < x_t; j++) idx[nn++] = s_t++;
        } else if (ye - Ye < 0 && Zs - zs < 0) {
          for (j = 0; j < x; j++) idx[nn++] = -1;
        }
        if (n8 >= 0) { /* right above */
          x_t = lx[n8 % m];
          y_t = ly[(n8 % (m * n)) / m];
          z_t = lz[n8 / (m * n)];
          s_t = bases[n8] + (i - 1) * x_t + x_t * y_t * z_t - (s_z - k) * x_t * y_t;
          for (j = 0; j < s_x; j++) idx[nn++] = s_t++;
        } else if (xe - Xe < 0 && ye - Ye < 0 && Zs - zs < 0) {
          for (j = 0; j < s_x; j++) idx[nn++] = -1;
        }
      }
    }

    /* Middle Level */
    for (k = 0; k < z; k++) {
      for (i = 1; i <= s_y; i++) {
        if (n9 >= 0) { /* left below */
          x_t = lx[n9 % m];
          y_t = ly[(n9 % (m * n)) / m];
          /* z_t = z; */
          s_t = bases[n9] - (s_y - i) * x_t - s_x + (k + 1) * x_t * y_t;
          for (j = 0; j < s_x; j++) idx[nn++] = s_t++;
        } else if (Xs - xs < 0 && Ys - ys < 0) {
          for (j = 0; j < s_x; j++) idx[nn++] = -1;
        }
        if (n10 >= 0) { /* directly below */
          x_t = x;
          y_t = ly[(n10 % (m * n)) / m];
          /* z_t = z; */
          s_t = bases[n10] - (s_y + 1 - i) * x_t + (k + 1) * x_t * y_t;
          for (j = 0; j < x_t; j++) idx[nn++] = s_t++;
        } else if (Ys - ys < 0) {
          if (by == DM_BOUNDARY_MIRROR) {
            for (j = 0; j < x; j++) idx[nn++] = bases[rank] + j + k * x * y + (s_y - i) * x;
          } else {
            for (j = 0; j < x; j++) idx[nn++] = -1;
          }
        }
        if (n11 >= 0) { /* right below */
          x_t = lx[n11 % m];
          y_t = ly[(n11 % (m * n)) / m];
          /* z_t = z; */
          s_t = bases[n11] - (s_y + 1 - i) * x_t + (k + 1) * x_t * y_t;
          for (j = 0; j < s_x; j++) idx[nn++] = s_t++;
        } else if (xe - Xe < 0 && Ys - ys < 0) {
          for (j = 0; j < s_x; j++) idx[nn++] = -1;
        }
      }

      for (i = 0; i < y; i++) {
        if (n12 >= 0) { /* directly left */
          x_t = lx[n12 % m];
          y_t = y;
          /* z_t = z; */
          s_t = bases[n12] + (i + 1) * x_t - s_x + k * x_t * y_t;
          for (j = 0; j < s_x; j++) idx[nn++] = s_t++;
        } else if (Xs - xs < 0) {
          if (bx == DM_BOUNDARY_MIRROR) {
            for (j = 0; j < s_x; j++) idx[nn++] = bases[rank] + s_x - j - 1 + k * x * y + i * x;
          } else {
            for (j = 0; j < s_x; j++) idx[nn++] = -1;
          }
        }

        /* Interior */
        s_t = bases[rank] + i * x + k * x * y;
        for (j = 0; j < x; j++) idx[nn++] = s_t++;

        if (n14 >= 0) { /* directly right */
          x_t = lx[n14 % m];
          y_t = y;
          /* z_t = z; */
          s_t = bases[n14] + i * x_t + k * x_t * y_t;
          for (j = 0; j < s_x; j++) idx[nn++] = s_t++;
        } else if (xe - Xe < 0) {
          if (bx == DM_BOUNDARY_MIRROR) {
            for (j = 0; j < s_x; j++) idx[nn++] = bases[rank] + x - j - 1 + k * x * y + i * x;
          } else {
            for (j = 0; j < s_x; j++) idx[nn++] = -1;
          }
        }
      }

      for (i = 1; i <= s_y; i++) {
        if (n15 >= 0) { /* left above */
          x_t = lx[n15 % m];
          y_t = ly[(n15 % (m * n)) / m];
          /* z_t = z; */
          s_t = bases[n15] + i * x_t - s_x + k * x_t * y_t;
          for (j = 0; j < s_x; j++) idx[nn++] = s_t++;
        } else if (Xs - xs < 0 && ye - Ye < 0) {
          for (j = 0; j < s_x; j++) idx[nn++] = -1;
        }
        if (n16 >= 0) { /* directly above */
          x_t = x;
          y_t = ly[(n16 % (m * n)) / m];
          /* z_t = z; */
          s_t = bases[n16] + (i - 1) * x_t + k * x_t * y_t;
          for (j = 0; j < x_t; j++) idx[nn++] = s_t++;
        } else if (ye - Ye < 0) {
          if (by == DM_BOUNDARY_MIRROR) {
            for (j = 0; j < x; j++) idx[nn++] = bases[rank] + j + k * x * y + (y - i) * x;
          } else {
            for (j = 0; j < x; j++) idx[nn++] = -1;
          }
        }
        if (n17 >= 0) { /* right above */
          x_t = lx[n17 % m];
          y_t = ly[(n17 % (m * n)) / m];
          /* z_t = z; */
          s_t = bases[n17] + (i - 1) * x_t + k * x_t * y_t;
          for (j = 0; j < s_x; j++) idx[nn++] = s_t++;
        } else if (xe - Xe < 0 && ye - Ye < 0) {
          for (j = 0; j < s_x; j++) idx[nn++] = -1;
        }
      }
    }

    /* Upper Level */
    for (k = 0; k < s_z; k++) {
      for (i = 1; i <= s_y; i++) {
        if (n18 >= 0) { /* left below */
          x_t = lx[n18 % m];
          y_t = ly[(n18 % (m * n)) / m];
          /* z_t = lz[n18 / (m*n)]; */
          s_t = bases[n18] - (s_y - i) * x_t - s_x + (k + 1) * x_t * y_t;
          for (j = 0; j < s_x; j++) idx[nn++] = s_t++;
        } else if (Xs - xs < 0 && Ys - ys < 0 && ze - Ze < 0) {
          for (j = 0; j < s_x; j++) idx[nn++] = -1;
        }
        if (n19 >= 0) { /* directly below */
          x_t = x;
          y_t = ly[(n19 % (m * n)) / m];
          /* z_t = lz[n19 / (m*n)]; */
          s_t = bases[n19] - (s_y + 1 - i) * x_t + (k + 1) * x_t * y_t;
          for (j = 0; j < x_t; j++) idx[nn++] = s_t++;
        } else if (Ys - ys < 0 && ze - Ze < 0) {
          for (j = 0; j < x; j++) idx[nn++] = -1;
        }
        if (n20 >= 0) { /* right below */
          x_t = lx[n20 % m];
          y_t = ly[(n20 % (m * n)) / m];
          /* z_t = lz[n20 / (m*n)]; */
          s_t = bases[n20] - (s_y + 1 - i) * x_t + (k + 1) * x_t * y_t;
          for (j = 0; j < s_x; j++) idx[nn++] = s_t++;
        } else if (xe - Xe < 0 && Ys - ys < 0 && ze - Ze < 0) {
          for (j = 0; j < s_x; j++) idx[nn++] = -1;
        }
      }

      for (i = 0; i < y; i++) {
        if (n21 >= 0) { /* directly left */
          x_t = lx[n21 % m];
          y_t = y;
          /* z_t = lz[n21 / (m*n)]; */
          s_t = bases[n21] + (i + 1) * x_t - s_x + k * x_t * y_t;
          for (j = 0; j < s_x; j++) idx[nn++] = s_t++;
        } else if (Xs - xs < 0 && ze - Ze < 0) {
          for (j = 0; j < s_x; j++) idx[nn++] = -1;
        }

        if (n22 >= 0) { /* middle */
          x_t = x;
          y_t = y;
          /* z_t = lz[n22 / (m*n)]; */
          s_t = bases[n22] + i * x_t + k * x_t * y_t;
          for (j = 0; j < x_t; j++) idx[nn++] = s_t++;
        } else if (ze - Ze < 0) {
          if (bz == DM_BOUNDARY_MIRROR) {
            for (j = 0; j < x; j++) idx[nn++] = bases[rank] + j + (z - k - 1) * x * y + i * x;
          } else {
            for (j = 0; j < x; j++) idx[nn++] = -1;
          }
        }

        if (n23 >= 0) { /* directly right */
          x_t = lx[n23 % m];
          y_t = y;
          /* z_t = lz[n23 / (m*n)]; */
          s_t = bases[n23] + i * x_t + k * x_t * y_t;
          for (j = 0; j < s_x; j++) idx[nn++] = s_t++;
        } else if (xe - Xe < 0 && ze - Ze < 0) {
          for (j = 0; j < s_x; j++) idx[nn++] = -1;
        }
      }

      for (i = 1; i <= s_y; i++) {
        if (n24 >= 0) { /* left above */
          x_t = lx[n24 % m];
          y_t = ly[(n24 % (m * n)) / m];
          /* z_t = lz[n24 / (m*n)]; */
          s_t = bases[n24] + i * x_t - s_x + k * x_t * y_t;
          for (j = 0; j < s_x; j++) idx[nn++] = s_t++;
        } else if (Xs - xs < 0 && ye - Ye < 0 && ze - Ze < 0) {
          for (j = 0; j < s_x; j++) idx[nn++] = -1;
        }
        if (n25 >= 0) { /* directly above */
          x_t = x;
          y_t = ly[(n25 % (m * n)) / m];
          /* z_t = lz[n25 / (m*n)]; */
          s_t = bases[n25] + (i - 1) * x_t + k * x_t * y_t;
          for (j = 0; j < x_t; j++) idx[nn++] = s_t++;
        } else if (ye - Ye < 0 && ze - Ze < 0) {
          for (j = 0; j < x; j++) idx[nn++] = -1;
        }
        if (n26 >= 0) { /* right above */
          x_t = lx[n26 % m];
          y_t = ly[(n26 % (m * n)) / m];
          /* z_t = lz[n26 / (m*n)]; */
          s_t = bases[n26] + (i - 1) * x_t + k * x_t * y_t;
          for (j = 0; j < s_x; j++) idx[nn++] = s_t++;
        } else if (xe - Xe < 0 && ye - Ye < 0 && ze - Ze < 0) {
          for (j = 0; j < s_x; j++) idx[nn++] = -1;
        }
      }
    }
  }
  /*
     Set the local to global ordering in the global vector, this allows use
     of VecSetValuesLocal().
  */
  PetscCall(ISLocalToGlobalMappingCreate(comm, dof, nn, idx, PETSC_OWN_POINTER, &da->ltogmap));

  PetscCall(PetscFree2(bases, ldims));
  dd->m = m;
  dd->n = n;
  dd->p = p;
  /* note petsc expects xs/xe/Xs/Xe to be multiplied by #dofs in many places */
  dd->xs = xs * dof;
  dd->xe = xe * dof;
  dd->ys = ys;
  dd->ye = ye;
  dd->zs = zs;
  dd->ze = ze;
  dd->Xs = Xs * dof;
  dd->Xe = Xe * dof;
  dd->Ys = Ys;
  dd->Ye = Ye;
  dd->Zs = Zs;
  dd->Ze = Ze;

  PetscCall(VecDestroy(&local));
  PetscCall(VecDestroy(&global));

  dd->gtol      = gtol;
  dd->base      = base;
  da->ops->view = DMView_DA_3d;
  dd->ltol      = NULL;
  dd->ao        = NULL;
  PetscFunctionReturn(PETSC_SUCCESS);
}

/*@C
  DMDACreate3d - Creates an object that will manage the communication of three-dimensional
  regular array data that is distributed across some processors.

  Collective

  Input Parameters:
+ comm         - MPI communicator
. bx           - type of x ghost nodes the array have.
         Use one of `DM_BOUNDARY_NONE`, `DM_BOUNDARY_GHOSTED`, `DM_BOUNDARY_PERIODIC`.
. by           - type of y ghost nodes the array have.
         Use one of `DM_BOUNDARY_NONE`, `DM_BOUNDARY_GHOSTED`, `DM_BOUNDARY_PERIODIC`.
. bz           - type of z ghost nodes the array have.
         Use one of `DM_BOUNDARY_NONE`, `DM_BOUNDARY_GHOSTED`, `DM_BOUNDARY_PERIODIC`.
. stencil_type - Type of stencil (`DMDA_STENCIL_STAR` or `DMDA_STENCIL_BOX`)
. M            - global dimension in x direction of the array
. N            - global dimension in y direction of the array
. P            - global dimension in z direction of the array
. m            - corresponding number of processors in x dimension (or `PETSC_DECIDE` to have calculated)
. n            - corresponding number of processors in y dimension (or `PETSC_DECIDE` to have calculated)
. p            - corresponding number of processors in z dimension (or `PETSC_DECIDE` to have calculated)
. dof          - number of degrees of freedom per node
. s            - stencil width
. lx           - arrays containing the number of nodes in each cell along the x  coordinates, or `NULL`.
. ly           - arrays containing the number of nodes in each cell along the y coordinates, or `NULL`.
- lz           - arrays containing the number of nodes in each cell along the z coordinates, or `NULL`.

  Output Parameter:
. da - the resulting distributed array object

  Options Database Keys:
+ -dm_view              - Calls `DMView()` at the conclusion of `DMDACreate3d()`
. -da_grid_x <nx>       - number of grid points in x direction
. -da_grid_y <ny>       - number of grid points in y direction
. -da_grid_z <nz>       - number of grid points in z direction
. -da_processors_x <MX> - number of processors in x direction
. -da_processors_y <MY> - number of processors in y direction
. -da_processors_z <MZ> - number of processors in z direction
. -da_refine_x <rx>     - refinement ratio in x direction
. -da_refine_y <ry>     - refinement ratio in y direction
. -da_refine_z <rz>     - refinement ratio in z directio
- -da_refine <n>        - refine the DMDA n times before creating it

  Level: beginner

  Notes:
  If `lx`, `ly`, or `lz` are non-null, these must be of length as `m`, `n`, `p` and the
  corresponding `m`, `n`, or `p` cannot be `PETSC_DECIDE`. Sum of the `lx` entries must be `M`,
  sum of the `ly` must `N`, sum of the `lz` must be `P`.

  The stencil type `DMDA_STENCIL_STAR` with width 1 corresponds to the
  standard 7-pt stencil, while `DMDA_STENCIL_BOX` with width 1 denotes
  the standard 27-pt stencil.

  The array data itself is NOT stored in the `DMDA`, it is stored in `Vec` objects;
  The appropriate vector objects can be obtained with calls to `DMCreateGlobalVector()`
  and `DMCreateLocalVector()` and calls to `VecDuplicate()` if more are needed.

  You must call `DMSetUp()` after this call before using this `DM`.

  If you wish to use the options database to change values in the `DMDA` call `DMSetFromOptions()` after this call
  but before `DMSetUp()`.

.seealso: `DM`, `DMDA`, `DMDestroy()`, `DMView()`, `DMDACreate1d()`, `DMDACreate2d()`, `DMGlobalToLocalBegin()`, `DMDAGetRefinementFactor()`,
          `DMGlobalToLocalEnd()`, `DMLocalToGlobalBegin()`, `DMLocalToLocalBegin()`, `DMLocalToLocalEnd()`, `DMDASetRefinementFactor()`,
          `DMDAGetInfo()`, `DMCreateGlobalVector()`, `DMCreateLocalVector()`, `DMDACreateNaturalVector()`, `DMLoad()`, `DMDAGetOwnershipRanges()`,
          `DMStagCreate3d()`
@*/
PetscErrorCode DMDACreate3d(MPI_Comm comm, DMBoundaryType bx, DMBoundaryType by, DMBoundaryType bz, DMDAStencilType stencil_type, PetscInt M, PetscInt N, PetscInt P, PetscInt m, PetscInt n, PetscInt p, PetscInt dof, PetscInt s, const PetscInt lx[], const PetscInt ly[], const PetscInt lz[], DM *da)
{
  PetscFunctionBegin;
  PetscCall(DMDACreate(comm, da));
  PetscCall(DMSetDimension(*da, 3));
  PetscCall(DMDASetSizes(*da, M, N, P));
  PetscCall(DMDASetNumProcs(*da, m, n, p));
  PetscCall(DMDASetBoundaryType(*da, bx, by, bz));
  PetscCall(DMDASetDof(*da, dof));
  PetscCall(DMDASetStencilType(*da, stencil_type));
  PetscCall(DMDASetStencilWidth(*da, s));
  PetscCall(DMDASetOwnershipRanges(*da, lx, ly, lz));
  PetscFunctionReturn(PETSC_SUCCESS);
}