1af0996ceSBarry Smith #include <petsc/private/dmdaimpl.h> /*I "petscdmda.h" I*/
247c6ae99SBarry Smith
DMSetFromOptions_DA(DM da,PetscOptionItems PetscOptionsObject)3ce78bad3SBarry Smith static PetscErrorCode DMSetFromOptions_DA(DM da, PetscOptionItems PetscOptionsObject)
4d71ae5a4SJacob Faibussowitsch {
547c6ae99SBarry Smith DM_DA *dd = (DM_DA *)da->data;
6c73cfb54SMatthew G. Knepley PetscInt refine = 0, dim = da->dim, maxnlevels = 100, refx[100], refy[100], refz[100], n, i;
7fe58071bSMatthew G. Knepley DMBoundaryType bt = DM_BOUNDARY_NONE;
8897f7067SBarry Smith PetscBool flg;
947c6ae99SBarry Smith
1047c6ae99SBarry Smith PetscFunctionBegin;
118e704042SBarry Smith PetscCheck(!da->setupcalled, PetscObjectComm((PetscObject)da), PETSC_ERR_ARG_WRONGSTATE, "Cannot call DMSetFromOptions() after DMSetUp() for DMDA");
1208401ef6SPierre Jolivet PetscCheck(dd->M >= 0, PetscObjectComm((PetscObject)da), PETSC_ERR_ARG_OUTOFRANGE, "Dimension must be non-negative, call DMSetFromOptions() if you want to change the value at runtime");
1308401ef6SPierre Jolivet PetscCheck(dd->N >= 0, PetscObjectComm((PetscObject)da), PETSC_ERR_ARG_OUTOFRANGE, "Dimension must be non-negative, call DMSetFromOptions() if you want to change the value at runtime");
1408401ef6SPierre Jolivet PetscCheck(dd->P >= 0, PetscObjectComm((PetscObject)da), PETSC_ERR_ARG_OUTOFRANGE, "Dimension must be non-negative, call DMSetFromOptions() if you want to change the value at runtime");
15235683edSBarry Smith
16d0609cedSBarry Smith PetscOptionsHeadBegin(PetscOptionsObject, "DMDA Options");
179566063dSJacob Faibussowitsch PetscCall(PetscOptionsBoundedInt("-da_grid_x", "Number of grid points in x direction", "DMDASetSizes", dd->M, &dd->M, NULL, 1));
189566063dSJacob Faibussowitsch if (dim > 1) PetscCall(PetscOptionsBoundedInt("-da_grid_y", "Number of grid points in y direction", "DMDASetSizes", dd->N, &dd->N, NULL, 1));
199566063dSJacob Faibussowitsch if (dim > 2) PetscCall(PetscOptionsBoundedInt("-da_grid_z", "Number of grid points in z direction", "DMDASetSizes", dd->P, &dd->P, NULL, 1));
207ddda789SPeter Brune
219566063dSJacob Faibussowitsch PetscCall(PetscOptionsBoundedInt("-da_overlap", "Decomposition overlap in all directions", "DMDASetOverlap", dd->xol, &dd->xol, &flg, 0));
229566063dSJacob Faibussowitsch if (flg) PetscCall(DMDASetOverlap(da, dd->xol, dd->xol, dd->xol));
239566063dSJacob Faibussowitsch PetscCall(PetscOptionsBoundedInt("-da_overlap_x", "Decomposition overlap in x direction", "DMDASetOverlap", dd->xol, &dd->xol, NULL, 0));
249566063dSJacob Faibussowitsch if (dim > 1) PetscCall(PetscOptionsBoundedInt("-da_overlap_y", "Decomposition overlap in y direction", "DMDASetOverlap", dd->yol, &dd->yol, NULL, 0));
259566063dSJacob Faibussowitsch if (dim > 2) PetscCall(PetscOptionsBoundedInt("-da_overlap_z", "Decomposition overlap in z direction", "DMDASetOverlap", dd->zol, &dd->zol, NULL, 0));
263e7870d2SPeter Brune
279566063dSJacob Faibussowitsch PetscCall(PetscOptionsBoundedInt("-da_local_subdomains", "", "DMDASetNumLocalSubdomains", dd->Nsub, &dd->Nsub, &flg, PETSC_DECIDE));
289566063dSJacob Faibussowitsch if (flg) PetscCall(DMDASetNumLocalSubDomains(da, dd->Nsub));
293e7870d2SPeter Brune
308d07fd27SPatrick Sanan /* Handle DMDA parallel distribution */
319566063dSJacob Faibussowitsch PetscCall(PetscOptionsBoundedInt("-da_processors_x", "Number of processors in x direction", "DMDASetNumProcs", dd->m, &dd->m, NULL, PETSC_DECIDE));
329566063dSJacob Faibussowitsch if (dim > 1) PetscCall(PetscOptionsBoundedInt("-da_processors_y", "Number of processors in y direction", "DMDASetNumProcs", dd->n, &dd->n, NULL, PETSC_DECIDE));
339566063dSJacob Faibussowitsch if (dim > 2) PetscCall(PetscOptionsBoundedInt("-da_processors_z", "Number of processors in z direction", "DMDASetNumProcs", dd->p, &dd->p, NULL, PETSC_DECIDE));
34fe58071bSMatthew G. Knepley // Handle boundaries
35fe58071bSMatthew G. Knepley PetscCall(PetscOptionsEnum("-da_bd_x", "Boundary type for x direction", "DMDASetBoundaryType", DMBoundaryTypes, (PetscEnum)dd->bx, (PetscEnum *)&dd->bx, NULL));
36fe58071bSMatthew G. Knepley if (dim > 1) PetscCall(PetscOptionsEnum("-da_bd_y", "Boundary type for y direction", "DMDASetBoundaryType", DMBoundaryTypes, (PetscEnum)dd->by, (PetscEnum *)&dd->by, NULL));
37fe58071bSMatthew G. Knepley if (dim > 2) PetscCall(PetscOptionsEnum("-da_bd_z", "Boundary type for z direction", "DMDASetBoundaryType", DMBoundaryTypes, (PetscEnum)dd->bz, (PetscEnum *)&dd->bz, NULL));
38fe58071bSMatthew G. Knepley PetscCall(PetscOptionsEnum("-da_bd_all", "Boundary type for every direction", "DMDASetBoundaryType", DMBoundaryTypes, (PetscEnum)bt, (PetscEnum *)&bt, &flg));
39fe58071bSMatthew G. Knepley if (flg) PetscCall(DMDASetBoundaryType(da, bt, bt, bt));
40aa219208SBarry Smith /* Handle DMDA refinement */
419566063dSJacob Faibussowitsch PetscCall(PetscOptionsBoundedInt("-da_refine_x", "Refinement ratio in x direction", "DMDASetRefinementFactor", dd->refine_x, &dd->refine_x, NULL, 1));
429566063dSJacob Faibussowitsch if (dim > 1) PetscCall(PetscOptionsBoundedInt("-da_refine_y", "Refinement ratio in y direction", "DMDASetRefinementFactor", dd->refine_y, &dd->refine_y, NULL, 1));
439566063dSJacob Faibussowitsch if (dim > 2) PetscCall(PetscOptionsBoundedInt("-da_refine_z", "Refinement ratio in z direction", "DMDASetRefinementFactor", dd->refine_z, &dd->refine_z, NULL, 1));
449371c9d4SSatish Balay dd->coarsen_x = dd->refine_x;
459371c9d4SSatish Balay dd->coarsen_y = dd->refine_y;
469371c9d4SSatish Balay dd->coarsen_z = dd->refine_z;
4747c6ae99SBarry Smith
48397b6216SJed Brown /* Get refinement factors, defaults taken from the coarse DMDA */
499566063dSJacob Faibussowitsch PetscCall(DMDAGetRefinementFactor(da, &refx[0], &refy[0], &refz[0]));
50397b6216SJed Brown for (i = 1; i < maxnlevels; i++) {
51397b6216SJed Brown refx[i] = refx[0];
52397b6216SJed Brown refy[i] = refy[0];
53397b6216SJed Brown refz[i] = refz[0];
54397b6216SJed Brown }
55397b6216SJed Brown n = maxnlevels;
569566063dSJacob Faibussowitsch PetscCall(PetscOptionsIntArray("-da_refine_hierarchy_x", "Refinement factor for each level", "None", refx, &n, &flg));
57897f7067SBarry Smith if (flg) {
58897f7067SBarry Smith dd->refine_x = refx[0];
59897f7067SBarry Smith dd->refine_x_hier_n = n;
609566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(n, &dd->refine_x_hier));
619566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(dd->refine_x_hier, refx, n));
62897f7067SBarry Smith }
63c73cfb54SMatthew G. Knepley if (dim > 1) {
64397b6216SJed Brown n = maxnlevels;
659566063dSJacob Faibussowitsch PetscCall(PetscOptionsIntArray("-da_refine_hierarchy_y", "Refinement factor for each level", "None", refy, &n, &flg));
66897f7067SBarry Smith if (flg) {
67897f7067SBarry Smith dd->refine_y = refy[0];
68897f7067SBarry Smith dd->refine_y_hier_n = n;
699566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(n, &dd->refine_y_hier));
709566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(dd->refine_y_hier, refy, n));
71897f7067SBarry Smith }
72397b6216SJed Brown }
73c73cfb54SMatthew G. Knepley if (dim > 2) {
74397b6216SJed Brown n = maxnlevels;
759566063dSJacob Faibussowitsch PetscCall(PetscOptionsIntArray("-da_refine_hierarchy_z", "Refinement factor for each level", "None", refz, &n, &flg));
76897f7067SBarry Smith if (flg) {
77897f7067SBarry Smith dd->refine_z = refz[0];
78897f7067SBarry Smith dd->refine_z_hier_n = n;
799566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(n, &dd->refine_z_hier));
809566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(dd->refine_z_hier, refz, n));
81897f7067SBarry Smith }
82397b6216SJed Brown }
83397b6216SJed Brown
849566063dSJacob Faibussowitsch PetscCall(PetscOptionsBoundedInt("-da_refine", "Uniformly refine DA one or more times", "None", refine, &refine, NULL, 0));
85d0609cedSBarry Smith PetscOptionsHeadEnd();
86235683edSBarry Smith
87e0f5d30fSBarry Smith while (refine--) {
88bff4a2f0SMatthew G. Knepley if (dd->bx == DM_BOUNDARY_PERIODIC || dd->interptype == DMDA_Q0) {
897a3b7fd5SBarry Smith PetscCall(PetscIntMultError(dd->refine_x, dd->M, &dd->M));
90e0f5d30fSBarry Smith } else {
917a3b7fd5SBarry Smith PetscCall(PetscIntMultError(dd->refine_x, dd->M - 1, &dd->M));
927a3b7fd5SBarry Smith dd->M += 1;
93e0f5d30fSBarry Smith }
9442e65cf2SBarry Smith if (dim > 1 && (dd->by == DM_BOUNDARY_PERIODIC || dd->interptype == DMDA_Q0)) {
957a3b7fd5SBarry Smith PetscCall(PetscIntMultError(dd->refine_y, dd->N, &dd->N));
9642e65cf2SBarry Smith } else if (dim > 1) {
977a3b7fd5SBarry Smith PetscCall(PetscIntMultError(dd->refine_y, dd->N - 1, &dd->N));
987a3b7fd5SBarry Smith dd->N += 1;
99e0f5d30fSBarry Smith }
10042e65cf2SBarry Smith if (dim > 2 && (dd->bz == DM_BOUNDARY_PERIODIC || dd->interptype == DMDA_Q0)) {
1017a3b7fd5SBarry Smith PetscCall(PetscIntMultError(dd->refine_z, dd->P, &dd->P));
10242e65cf2SBarry Smith } else if (dim > 2) {
1037a3b7fd5SBarry Smith PetscCall(PetscIntMultError(dd->refine_z, dd->P - 1, &dd->P));
1047a3b7fd5SBarry Smith dd->P += 1;
105e0f5d30fSBarry Smith }
106e0f5d30fSBarry Smith da->levelup++;
10785fc4b34SJed Brown if (da->levelup - da->leveldown >= 0) {
10885fc4b34SJed Brown dd->refine_x = refx[da->levelup - da->leveldown];
10985fc4b34SJed Brown dd->refine_y = refy[da->levelup - da->leveldown];
11085fc4b34SJed Brown dd->refine_z = refz[da->levelup - da->leveldown];
11185fc4b34SJed Brown }
11285fc4b34SJed Brown if (da->levelup - da->leveldown >= 1) {
11385fc4b34SJed Brown dd->coarsen_x = refx[da->levelup - da->leveldown - 1];
11485fc4b34SJed Brown dd->coarsen_y = refy[da->levelup - da->leveldown - 1];
11585fc4b34SJed Brown dd->coarsen_z = refz[da->levelup - da->leveldown - 1];
11685fc4b34SJed Brown }
117e0f5d30fSBarry Smith }
1183ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS);
11947c6ae99SBarry Smith }
12047c6ae99SBarry Smith
DMLoad_DA(DM da,PetscViewer viewer)121ba38deedSJacob Faibussowitsch static PetscErrorCode DMLoad_DA(DM da, PetscViewer viewer)
122d71ae5a4SJacob Faibussowitsch {
123060da220SMatthew G. Knepley PetscInt dim, m, n, p, dof, swidth;
124b859378eSBarry Smith DMDAStencilType stencil;
125bff4a2f0SMatthew G. Knepley DMBoundaryType bx, by, bz;
126bc2bf880SBarry Smith PetscBool coors;
127bc2bf880SBarry Smith DM dac;
128bc2bf880SBarry Smith Vec c;
129b859378eSBarry Smith
130b859378eSBarry Smith PetscFunctionBegin;
1319566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryRead(viewer, &dim, 1, NULL, PETSC_INT));
1329566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryRead(viewer, &m, 1, NULL, PETSC_INT));
1339566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryRead(viewer, &n, 1, NULL, PETSC_INT));
1349566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryRead(viewer, &p, 1, NULL, PETSC_INT));
1359566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryRead(viewer, &dof, 1, NULL, PETSC_INT));
1369566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryRead(viewer, &swidth, 1, NULL, PETSC_INT));
1379566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryRead(viewer, &bx, 1, NULL, PETSC_ENUM));
1389566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryRead(viewer, &by, 1, NULL, PETSC_ENUM));
1399566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryRead(viewer, &bz, 1, NULL, PETSC_ENUM));
1409566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryRead(viewer, &stencil, 1, NULL, PETSC_ENUM));
141b859378eSBarry Smith
1429566063dSJacob Faibussowitsch PetscCall(DMSetDimension(da, dim));
1439566063dSJacob Faibussowitsch PetscCall(DMDASetSizes(da, m, n, p));
1449566063dSJacob Faibussowitsch PetscCall(DMDASetBoundaryType(da, bx, by, bz));
1459566063dSJacob Faibussowitsch PetscCall(DMDASetDof(da, dof));
1469566063dSJacob Faibussowitsch PetscCall(DMDASetStencilType(da, stencil));
1479566063dSJacob Faibussowitsch PetscCall(DMDASetStencilWidth(da, swidth));
1489566063dSJacob Faibussowitsch PetscCall(DMSetUp(da));
149*853b3c7bSNum Mendez PetscCall(PetscViewerBinaryRead(viewer, &coors, 1, NULL, PETSC_BOOL));
150bc2bf880SBarry Smith if (coors) {
1519566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDM(da, &dac));
1529566063dSJacob Faibussowitsch PetscCall(DMCreateGlobalVector(dac, &c));
1539566063dSJacob Faibussowitsch PetscCall(VecLoad(c, viewer));
1549566063dSJacob Faibussowitsch PetscCall(DMSetCoordinates(da, c));
1559566063dSJacob Faibussowitsch PetscCall(VecDestroy(&c));
156bc2bf880SBarry Smith }
1573ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS);
158b859378eSBarry Smith }
159b859378eSBarry Smith
DMCreateSubDM_DA(DM dm,PetscInt numFields,const PetscInt fields[],IS * is,DM * subdm)160ba38deedSJacob Faibussowitsch static PetscErrorCode DMCreateSubDM_DA(DM dm, PetscInt numFields, const PetscInt fields[], IS *is, DM *subdm)
161d71ae5a4SJacob Faibussowitsch {
162d724dfffSBarry Smith DM_DA *da = (DM_DA *)dm->data;
163d724dfffSBarry Smith
164d724dfffSBarry Smith PetscFunctionBegin;
165d724dfffSBarry Smith if (subdm) {
166c38c1269SMatthew G. Knepley PetscSF sf;
167c38c1269SMatthew G. Knepley Vec coords;
168c38c1269SMatthew G. Knepley void *ctx;
169c38c1269SMatthew G. Knepley /* Cannot use DMClone since the dof stuff is mixed in. Ugh
1709566063dSJacob Faibussowitsch PetscCall(DMClone(dm, subdm)); */
1719566063dSJacob Faibussowitsch PetscCall(DMCreate(PetscObjectComm((PetscObject)dm), subdm));
1729566063dSJacob Faibussowitsch PetscCall(DMGetPointSF(dm, &sf));
1739566063dSJacob Faibussowitsch PetscCall(DMSetPointSF(*subdm, sf));
1749566063dSJacob Faibussowitsch PetscCall(DMGetApplicationContext(dm, &ctx));
1759566063dSJacob Faibussowitsch PetscCall(DMSetApplicationContext(*subdm, ctx));
1769566063dSJacob Faibussowitsch PetscCall(DMGetCoordinatesLocal(dm, &coords));
177c38c1269SMatthew G. Knepley if (coords) {
1789566063dSJacob Faibussowitsch PetscCall(DMSetCoordinatesLocal(*subdm, coords));
179c38c1269SMatthew G. Knepley } else {
1809566063dSJacob Faibussowitsch PetscCall(DMGetCoordinates(dm, &coords));
1819566063dSJacob Faibussowitsch if (coords) PetscCall(DMSetCoordinates(*subdm, coords));
182c38c1269SMatthew G. Knepley }
183c38c1269SMatthew G. Knepley
1849566063dSJacob Faibussowitsch PetscCall(DMSetType(*subdm, DMDA));
1859566063dSJacob Faibussowitsch PetscCall(DMSetDimension(*subdm, dm->dim));
1869566063dSJacob Faibussowitsch PetscCall(DMDASetSizes(*subdm, da->M, da->N, da->P));
1879566063dSJacob Faibussowitsch PetscCall(DMDASetNumProcs(*subdm, da->m, da->n, da->p));
1889566063dSJacob Faibussowitsch PetscCall(DMDASetBoundaryType(*subdm, da->bx, da->by, da->bz));
1899566063dSJacob Faibussowitsch PetscCall(DMDASetDof(*subdm, numFields));
1909566063dSJacob Faibussowitsch PetscCall(DMDASetStencilType(*subdm, da->stencil_type));
1919566063dSJacob Faibussowitsch PetscCall(DMDASetStencilWidth(*subdm, da->s));
1929566063dSJacob Faibussowitsch PetscCall(DMDASetOwnershipRanges(*subdm, da->lx, da->ly, da->lz));
193d724dfffSBarry Smith }
194d724dfffSBarry Smith if (is) {
195d724dfffSBarry Smith PetscInt *indices, cnt = 0, dof = da->w, i, j;
19638221697SMatthew G. Knepley
1979566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(da->Nlocal * numFields / dof, &indices));
19838221697SMatthew G. Knepley for (i = da->base / dof; i < (da->base + da->Nlocal) / dof; ++i) {
199ad540459SPierre Jolivet for (j = 0; j < numFields; ++j) indices[cnt++] = dof * i + fields[j];
200d724dfffSBarry Smith }
20163a3b9bcSJacob Faibussowitsch PetscCheck(cnt == da->Nlocal * numFields / dof, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Count %" PetscInt_FMT " does not equal expected value %" PetscInt_FMT, cnt, da->Nlocal * numFields / dof);
2029566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)dm), cnt, indices, PETSC_OWN_POINTER, is));
203d724dfffSBarry Smith }
2043ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS);
205d724dfffSBarry Smith }
206d724dfffSBarry Smith
DMCreateFieldDecomposition_DA(DM dm,PetscInt * len,char *** namelist,IS ** islist,DM ** dmlist)207ba38deedSJacob Faibussowitsch static PetscErrorCode DMCreateFieldDecomposition_DA(DM dm, PetscInt *len, char ***namelist, IS **islist, DM **dmlist)
208d71ae5a4SJacob Faibussowitsch {
2091c3fb106SBarry Smith PetscInt i;
2101c3fb106SBarry Smith DM_DA *dd = (DM_DA *)dm->data;
2111c3fb106SBarry Smith PetscInt dof = dd->w;
2121c3fb106SBarry Smith
2131c3fb106SBarry Smith PetscFunctionBegin;
214731c8d9eSDmitry Karpeev if (len) *len = dof;
2151c3fb106SBarry Smith if (islist) {
2161c3fb106SBarry Smith Vec v;
2171c3fb106SBarry Smith PetscInt rstart, n;
2181c3fb106SBarry Smith
2199566063dSJacob Faibussowitsch PetscCall(DMGetGlobalVector(dm, &v));
2209566063dSJacob Faibussowitsch PetscCall(VecGetOwnershipRange(v, &rstart, NULL));
2219566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(v, &n));
2229566063dSJacob Faibussowitsch PetscCall(DMRestoreGlobalVector(dm, &v));
2239566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(dof, islist));
22448a46eb9SPierre Jolivet for (i = 0; i < dof; i++) PetscCall(ISCreateStride(PetscObjectComm((PetscObject)dm), n / dof, rstart + i, dof, &(*islist)[i]));
2251c3fb106SBarry Smith }
2261c3fb106SBarry Smith if (namelist) {
2279566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(dof, namelist));
228966bd95aSPierre Jolivet PetscCheck(dd->fieldname, PETSC_COMM_SELF, PETSC_ERR_SUP, "Currently DMDA must have fieldnames");
22948a46eb9SPierre Jolivet for (i = 0; i < dof; i++) PetscCall(PetscStrallocpy(dd->fieldname[i], &(*namelist)[i]));
2301c3fb106SBarry Smith }
2311c3fb106SBarry Smith if (dmlist) {
2321c3fb106SBarry Smith DM da;
2331c3fb106SBarry Smith
2349566063dSJacob Faibussowitsch PetscCall(DMDACreate(PetscObjectComm((PetscObject)dm), &da));
2359566063dSJacob Faibussowitsch PetscCall(DMSetDimension(da, dm->dim));
2369566063dSJacob Faibussowitsch PetscCall(DMDASetSizes(da, dd->M, dd->N, dd->P));
2379566063dSJacob Faibussowitsch PetscCall(DMDASetNumProcs(da, dd->m, dd->n, dd->p));
2389566063dSJacob Faibussowitsch PetscCall(DMDASetBoundaryType(da, dd->bx, dd->by, dd->bz));
2399566063dSJacob Faibussowitsch PetscCall(DMDASetDof(da, 1));
2409566063dSJacob Faibussowitsch PetscCall(DMDASetStencilType(da, dd->stencil_type));
2419566063dSJacob Faibussowitsch PetscCall(DMDASetStencilWidth(da, dd->s));
2429566063dSJacob Faibussowitsch PetscCall(DMSetUp(da));
2439566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(dof, dmlist));
2449566063dSJacob Faibussowitsch for (i = 0; i < dof - 1; i++) PetscCall(PetscObjectReference((PetscObject)da));
2451c3fb106SBarry Smith for (i = 0; i < dof; i++) (*dmlist)[i] = da;
2461c3fb106SBarry Smith }
2473ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS);
2481c3fb106SBarry Smith }
2491c3fb106SBarry Smith
DMClone_DA(DM dm,DM * newdm)250ba38deedSJacob Faibussowitsch static PetscErrorCode DMClone_DA(DM dm, DM *newdm)
251d71ae5a4SJacob Faibussowitsch {
25238221697SMatthew G. Knepley DM_DA *da = (DM_DA *)dm->data;
25338221697SMatthew G. Knepley
25438221697SMatthew G. Knepley PetscFunctionBegin;
2559566063dSJacob Faibussowitsch PetscCall(DMSetType(*newdm, DMDA));
2569566063dSJacob Faibussowitsch PetscCall(DMSetDimension(*newdm, dm->dim));
2579566063dSJacob Faibussowitsch PetscCall(DMDASetSizes(*newdm, da->M, da->N, da->P));
2589566063dSJacob Faibussowitsch PetscCall(DMDASetNumProcs(*newdm, da->m, da->n, da->p));
2599566063dSJacob Faibussowitsch PetscCall(DMDASetBoundaryType(*newdm, da->bx, da->by, da->bz));
2609566063dSJacob Faibussowitsch PetscCall(DMDASetDof(*newdm, da->w));
2619566063dSJacob Faibussowitsch PetscCall(DMDASetStencilType(*newdm, da->stencil_type));
2629566063dSJacob Faibussowitsch PetscCall(DMDASetStencilWidth(*newdm, da->s));
2639566063dSJacob Faibussowitsch PetscCall(DMDASetOwnershipRanges(*newdm, da->lx, da->ly, da->lz));
2649566063dSJacob Faibussowitsch PetscCall(DMSetUp(*newdm));
2653ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS);
26638221697SMatthew G. Knepley }
26738221697SMatthew G. Knepley
DMHasCreateInjection_DA(DM dm,PetscBool * flg)268d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMHasCreateInjection_DA(DM dm, PetscBool *flg)
269d71ae5a4SJacob Faibussowitsch {
2704a7a4c06SLawrence Mitchell DM_DA *da = (DM_DA *)dm->data;
2714a7a4c06SLawrence Mitchell
2724a7a4c06SLawrence Mitchell PetscFunctionBegin;
2734a7a4c06SLawrence Mitchell PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
2744f572ea9SToby Isaac PetscAssertPointer(flg, 2);
275131f56ebSLawrence Mitchell *flg = da->interptype == DMDA_Q1 ? PETSC_TRUE : PETSC_FALSE;
2763ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS);
2774a7a4c06SLawrence Mitchell }
2784a7a4c06SLawrence Mitchell
DMGetDimPoints_DA(DM dm,PetscInt dim,PetscInt * pStart,PetscInt * pEnd)279d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMGetDimPoints_DA(DM dm, PetscInt dim, PetscInt *pStart, PetscInt *pEnd)
280d71ae5a4SJacob Faibussowitsch {
281793f3fe5SMatthew G. Knepley PetscFunctionBegin;
2829566063dSJacob Faibussowitsch PetscCall(DMDAGetDepthStratum(dm, dim, pStart, pEnd));
2833ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS);
284793f3fe5SMatthew G. Knepley }
285793f3fe5SMatthew G. Knepley
DMGetNeighbors_DA(DM dm,PetscInt * nranks,const PetscMPIInt * ranks[])286d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMGetNeighbors_DA(DM dm, PetscInt *nranks, const PetscMPIInt *ranks[])
287d71ae5a4SJacob Faibussowitsch {
288502a2867SDave May PetscInt dim;
289502a2867SDave May DMDAStencilType st;
290502a2867SDave May
291502a2867SDave May PetscFunctionBegin;
2929566063dSJacob Faibussowitsch PetscCall(DMDAGetNeighbors(dm, ranks));
2939566063dSJacob Faibussowitsch PetscCall(DMDAGetInfo(dm, &dim, NULL, NULL, NULL, NULL, NULL, NULL, NULL, NULL, NULL, NULL, NULL, &st));
294502a2867SDave May
295502a2867SDave May switch (dim) {
296502a2867SDave May case 1:
297502a2867SDave May *nranks = 3;
298ad540459SPierre Jolivet /* if (st == DMDA_STENCIL_STAR) *nranks = 3; */
299502a2867SDave May break;
300502a2867SDave May case 2:
301502a2867SDave May *nranks = 9;
302ad540459SPierre Jolivet /* if (st == DMDA_STENCIL_STAR) *nranks = 5; */
303502a2867SDave May break;
304502a2867SDave May case 3:
305502a2867SDave May *nranks = 27;
306ad540459SPierre Jolivet /* if (st == DMDA_STENCIL_STAR) *nranks = 7; */
307502a2867SDave May break;
308d71ae5a4SJacob Faibussowitsch default:
309d71ae5a4SJacob Faibussowitsch break;
310502a2867SDave May }
3113ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS);
312502a2867SDave May }
313502a2867SDave May
3143efe6655SBarry Smith /*MC
3150b4b7b1cSBarry Smith DMDA = "da" - A `DM` object that is used to help solve PDEs on a structured grid (or mesh) in 1, 2, or 3 dimensions.
3163efe6655SBarry Smith
3173efe6655SBarry Smith Level: intermediate
3183efe6655SBarry Smith
3190b4b7b1cSBarry Smith Notes:
3200b4b7b1cSBarry Smith In the global representation of the vectors each process stores a non-overlapping rectangular (or slab in 3d) portion of the grid points.
3210b4b7b1cSBarry Smith In the local representation these rectangular regions (slabs) are extended in all directions by a stencil width set with `DMDASetStencilWidth()`.
3220b4b7b1cSBarry Smith
3230b4b7b1cSBarry Smith The vectors can be thought of as either cell centered or vertex centered on the grid (or mesh). But some variables cannot be cell centered and others
3240b4b7b1cSBarry Smith vertex centered; see the documentation for `DMSTAG`, a similar `DM` implementation which supports more general staggered grids.
3250b4b7b1cSBarry Smith
3260b4b7b1cSBarry Smith Periodic boundary conditions can be handled by using a `DMBoundaryType` of `DM_BOUNDARY_PERIODIC` provided with `DMDASetBoundaryType()`.
3270b4b7b1cSBarry Smith Other `DMBoundaryType`values allow for different handling of terms along the boundary of the grid (or mesh).
3280b4b7b1cSBarry Smith
32912b4a537SBarry Smith .seealso: [](sec_struct), `DMType`, `DMCOMPOSITE`, `DMSTAG`, `DMDACreate()`, `DMCreate()`, `DMSetType()`, `DMDASetStencilWidth()`, `DMDASetStencilType()`,
33012b4a537SBarry Smith `DMDAStencilType`
3313efe6655SBarry Smith M*/
3323efe6655SBarry Smith
DMCreate_DA(DM da)333d71ae5a4SJacob Faibussowitsch PETSC_EXTERN PetscErrorCode DMCreate_DA(DM da)
334d71ae5a4SJacob Faibussowitsch {
33547c6ae99SBarry Smith DM_DA *dd;
33647c6ae99SBarry Smith
33747c6ae99SBarry Smith PetscFunctionBegin;
3384f572ea9SToby Isaac PetscAssertPointer(da, 1);
3394dfa11a4SJacob Faibussowitsch PetscCall(PetscNew(&dd));
340a4121054SBarry Smith da->data = dd;
34147c6ae99SBarry Smith
342c73cfb54SMatthew G. Knepley da->dim = -1;
343aa219208SBarry Smith dd->interptype = DMDA_Q1;
34447c6ae99SBarry Smith dd->refine_x = 2;
34547c6ae99SBarry Smith dd->refine_y = 2;
34647c6ae99SBarry Smith dd->refine_z = 2;
34781c108dcSJed Brown dd->coarsen_x = 2;
34881c108dcSJed Brown dd->coarsen_y = 2;
34981c108dcSJed Brown dd->coarsen_z = 2;
3500298fd71SBarry Smith dd->fieldname = NULL;
35147c6ae99SBarry Smith dd->nlocal = -1;
35247c6ae99SBarry Smith dd->Nlocal = -1;
35347c6ae99SBarry Smith dd->M = -1;
35447c6ae99SBarry Smith dd->N = -1;
35547c6ae99SBarry Smith dd->P = -1;
35647c6ae99SBarry Smith dd->m = -1;
35747c6ae99SBarry Smith dd->n = -1;
35847c6ae99SBarry Smith dd->p = -1;
35947c6ae99SBarry Smith dd->w = -1;
36047c6ae99SBarry Smith dd->s = -1;
3618865f1eaSKarl Rupp
3629371c9d4SSatish Balay dd->xs = -1;
3639371c9d4SSatish Balay dd->xe = -1;
3649371c9d4SSatish Balay dd->ys = -1;
3659371c9d4SSatish Balay dd->ye = -1;
3669371c9d4SSatish Balay dd->zs = -1;
3679371c9d4SSatish Balay dd->ze = -1;
3689371c9d4SSatish Balay dd->Xs = -1;
3699371c9d4SSatish Balay dd->Xe = -1;
3709371c9d4SSatish Balay dd->Ys = -1;
3719371c9d4SSatish Balay dd->Ye = -1;
3729371c9d4SSatish Balay dd->Zs = -1;
3739371c9d4SSatish Balay dd->Ze = -1;
37447c6ae99SBarry Smith
3753e7870d2SPeter Brune dd->Nsub = 1;
3767ddda789SPeter Brune dd->xol = 0;
3777ddda789SPeter Brune dd->yol = 0;
3787ddda789SPeter Brune dd->zol = 0;
379d886c4f4SPeter Brune dd->xo = 0;
380d886c4f4SPeter Brune dd->yo = 0;
381d886c4f4SPeter Brune dd->zo = 0;
382e30e807fSPeter Brune dd->Mo = -1;
383e30e807fSPeter Brune dd->No = -1;
384e30e807fSPeter Brune dd->Po = -1;
38588661749SPeter Brune
3860298fd71SBarry Smith dd->gtol = NULL;
3870298fd71SBarry Smith dd->ltol = NULL;
3880298fd71SBarry Smith dd->ao = NULL;
3893ba16761SJacob Faibussowitsch PetscCall(PetscStrallocpy(AOBASIC, (char **)&dd->aotype));
39047c6ae99SBarry Smith dd->base = -1;
391bff4a2f0SMatthew G. Knepley dd->bx = DM_BOUNDARY_NONE;
392bff4a2f0SMatthew G. Knepley dd->by = DM_BOUNDARY_NONE;
393bff4a2f0SMatthew G. Knepley dd->bz = DM_BOUNDARY_NONE;
394aa219208SBarry Smith dd->stencil_type = DMDA_STENCIL_BOX;
395aa219208SBarry Smith dd->interptype = DMDA_Q1;
3960298fd71SBarry Smith dd->lx = NULL;
3970298fd71SBarry Smith dd->ly = NULL;
3980298fd71SBarry Smith dd->lz = NULL;
39947c6ae99SBarry Smith
400454e267fSLisandro Dalcin dd->elementtype = DMDA_ELEMENT_Q1;
401454e267fSLisandro Dalcin
402a4121054SBarry Smith da->ops->globaltolocalbegin = DMGlobalToLocalBegin_DA;
403a4121054SBarry Smith da->ops->globaltolocalend = DMGlobalToLocalEnd_DA;
404a4121054SBarry Smith da->ops->localtoglobalbegin = DMLocalToGlobalBegin_DA;
405a4121054SBarry Smith da->ops->localtoglobalend = DMLocalToGlobalEnd_DA;
406d78e899eSRichard Tran Mills da->ops->localtolocalbegin = DMLocalToLocalBegin_DA;
407d78e899eSRichard Tran Mills da->ops->localtolocalend = DMLocalToLocalEnd_DA;
408a4121054SBarry Smith da->ops->createglobalvector = DMCreateGlobalVector_DA;
409a4121054SBarry Smith da->ops->createlocalvector = DMCreateLocalVector_DA;
41025296bd5SBarry Smith da->ops->createinterpolation = DMCreateInterpolation_DA;
411e727c939SJed Brown da->ops->getcoloring = DMCreateColoring_DA;
41225296bd5SBarry Smith da->ops->creatematrix = DMCreateMatrix_DA;
413a4121054SBarry Smith da->ops->refine = DMRefine_DA;
414a4121054SBarry Smith da->ops->coarsen = DMCoarsen_DA;
415a4121054SBarry Smith da->ops->refinehierarchy = DMRefineHierarchy_DA;
416a4121054SBarry Smith da->ops->coarsenhierarchy = DMCoarsenHierarchy_DA;
4175a84ad33SLisandro Dalcin da->ops->createinjection = DMCreateInjection_DA;
4184a7a4c06SLawrence Mitchell da->ops->hascreateinjection = DMHasCreateInjection_DA;
419a4121054SBarry Smith da->ops->destroy = DMDestroy_DA;
420ea78f98cSLisandro Dalcin da->ops->view = NULL;
421a4121054SBarry Smith da->ops->setfromoptions = DMSetFromOptions_DA;
422a4121054SBarry Smith da->ops->setup = DMSetUp_DA;
42338221697SMatthew G. Knepley da->ops->clone = DMClone_DA;
424b859378eSBarry Smith da->ops->load = DMLoad_DA;
4256636e97aSMatthew G Knepley da->ops->createcoordinatedm = DMCreateCoordinateDM_DA;
42699acd26cSksagiyam da->ops->createcellcoordinatedm = NULL;
427d724dfffSBarry Smith da->ops->createsubdm = DMCreateSubDM_DA;
42816621825SDmitry Karpeev da->ops->createfielddecomposition = DMCreateFieldDecomposition_DA;
429e30e807fSPeter Brune da->ops->createdomaindecomposition = DMCreateDomainDecomposition_DA;
430e30e807fSPeter Brune da->ops->createddscatters = DMCreateDomainDecompositionScatters_DA;
431793f3fe5SMatthew G. Knepley da->ops->getdimpoints = DMGetDimPoints_DA;
432502a2867SDave May da->ops->getneighbors = DMGetNeighbors_DA;
4336c6a6b79SMatthew G. Knepley da->ops->getlocalboundingbox = DMGetLocalBoundingBox_DA;
43405264a50SDave May da->ops->locatepoints = DMLocatePoints_DA_Regular;
4357c3cd84eSPatrick Sanan da->ops->getcompatibility = DMGetCompatibility_DA;
4369566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)da, "DMSetUpGLVisViewer_C", DMSetUpGLVisViewer_DMDA));
4373ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS);
438a4121054SBarry Smith }
43947c6ae99SBarry Smith
440a4121054SBarry Smith /*@
44112b4a537SBarry Smith DMDACreate - Creates a `DMDA` object for managing structured grids.
442a4121054SBarry Smith
4435edebc4bSPatrick Sanan Collective
444a4121054SBarry Smith
445a4121054SBarry Smith Input Parameter:
44612b4a537SBarry Smith . comm - The communicator for the `DMDA` object
447a4121054SBarry Smith
448a4121054SBarry Smith Output Parameter:
44972fd0fbdSBarry Smith . da - the `DMDA` object
450a4121054SBarry Smith
451e0f5d30fSBarry Smith Level: advanced
452e0f5d30fSBarry Smith
45372fd0fbdSBarry Smith Notes:
45472fd0fbdSBarry Smith See [](sec_struct) for details on the construction of a `DMDA`
455a4121054SBarry Smith
45672fd0fbdSBarry Smith `DMDACreate1d()`, `DMDACreate2d()`, and `DMDACreate3d()` are convenience routines to quickly completely create a `DMDA`
45772fd0fbdSBarry Smith
45872fd0fbdSBarry Smith .seealso: [](sec_struct), `DM`, `DMDA`, `DMSetUp()`, `DMDASetSizes()`, `DMClone()`, `DMDACreate1d()`, `DMDACreate2d()`, `DMDACreate3d()`
459a4121054SBarry Smith @*/
DMDACreate(MPI_Comm comm,DM * da)460d71ae5a4SJacob Faibussowitsch PetscErrorCode DMDACreate(MPI_Comm comm, DM *da)
461d71ae5a4SJacob Faibussowitsch {
462a4121054SBarry Smith PetscFunctionBegin;
4634f572ea9SToby Isaac PetscAssertPointer(da, 2);
4649566063dSJacob Faibussowitsch PetscCall(DMCreate(comm, da));
4659566063dSJacob Faibussowitsch PetscCall(DMSetType(*da, DMDA));
4663ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS);
46747c6ae99SBarry Smith }
468