xref: /petsc/src/dm/impls/da/dacreate.c (revision 42e65cf20546ef3d3540361cdbee4937af774a4e)
1af0996ceSBarry Smith #include <petsc/private/dmdaimpl.h> /*I   "petscdmda.h"   I*/
247c6ae99SBarry Smith 
3ba38deedSJacob Faibussowitsch static PetscErrorCode DMSetFromOptions_DA(DM da, PetscOptionItems *PetscOptionsObject)
4d71ae5a4SJacob Faibussowitsch {
547c6ae99SBarry Smith   DM_DA         *dd     = (DM_DA *)da->data;
6c73cfb54SMatthew G. Knepley   PetscInt       refine = 0, dim = da->dim, maxnlevels = 100, refx[100], refy[100], refz[100], n, i;
7fe58071bSMatthew G. Knepley   DMBoundaryType bt = DM_BOUNDARY_NONE;
8897f7067SBarry Smith   PetscBool      flg;
947c6ae99SBarry Smith 
1047c6ae99SBarry Smith   PetscFunctionBegin;
118e704042SBarry Smith   PetscCheck(!da->setupcalled, PetscObjectComm((PetscObject)da), PETSC_ERR_ARG_WRONGSTATE, "Cannot call DMSetFromOptions() after DMSetUp() for DMDA");
1208401ef6SPierre Jolivet   PetscCheck(dd->M >= 0, PetscObjectComm((PetscObject)da), PETSC_ERR_ARG_OUTOFRANGE, "Dimension must be non-negative, call DMSetFromOptions() if you want to change the value at runtime");
1308401ef6SPierre Jolivet   PetscCheck(dd->N >= 0, PetscObjectComm((PetscObject)da), PETSC_ERR_ARG_OUTOFRANGE, "Dimension must be non-negative, call DMSetFromOptions() if you want to change the value at runtime");
1408401ef6SPierre Jolivet   PetscCheck(dd->P >= 0, PetscObjectComm((PetscObject)da), PETSC_ERR_ARG_OUTOFRANGE, "Dimension must be non-negative, call DMSetFromOptions() if you want to change the value at runtime");
15235683edSBarry Smith 
16d0609cedSBarry Smith   PetscOptionsHeadBegin(PetscOptionsObject, "DMDA Options");
179566063dSJacob Faibussowitsch   PetscCall(PetscOptionsBoundedInt("-da_grid_x", "Number of grid points in x direction", "DMDASetSizes", dd->M, &dd->M, NULL, 1));
189566063dSJacob Faibussowitsch   if (dim > 1) PetscCall(PetscOptionsBoundedInt("-da_grid_y", "Number of grid points in y direction", "DMDASetSizes", dd->N, &dd->N, NULL, 1));
199566063dSJacob Faibussowitsch   if (dim > 2) PetscCall(PetscOptionsBoundedInt("-da_grid_z", "Number of grid points in z direction", "DMDASetSizes", dd->P, &dd->P, NULL, 1));
207ddda789SPeter Brune 
219566063dSJacob Faibussowitsch   PetscCall(PetscOptionsBoundedInt("-da_overlap", "Decomposition overlap in all directions", "DMDASetOverlap", dd->xol, &dd->xol, &flg, 0));
229566063dSJacob Faibussowitsch   if (flg) PetscCall(DMDASetOverlap(da, dd->xol, dd->xol, dd->xol));
239566063dSJacob Faibussowitsch   PetscCall(PetscOptionsBoundedInt("-da_overlap_x", "Decomposition overlap in x direction", "DMDASetOverlap", dd->xol, &dd->xol, NULL, 0));
249566063dSJacob Faibussowitsch   if (dim > 1) PetscCall(PetscOptionsBoundedInt("-da_overlap_y", "Decomposition overlap in y direction", "DMDASetOverlap", dd->yol, &dd->yol, NULL, 0));
259566063dSJacob Faibussowitsch   if (dim > 2) PetscCall(PetscOptionsBoundedInt("-da_overlap_z", "Decomposition overlap in z direction", "DMDASetOverlap", dd->zol, &dd->zol, NULL, 0));
263e7870d2SPeter Brune 
279566063dSJacob Faibussowitsch   PetscCall(PetscOptionsBoundedInt("-da_local_subdomains", "", "DMDASetNumLocalSubdomains", dd->Nsub, &dd->Nsub, &flg, PETSC_DECIDE));
289566063dSJacob Faibussowitsch   if (flg) PetscCall(DMDASetNumLocalSubDomains(da, dd->Nsub));
293e7870d2SPeter Brune 
308d07fd27SPatrick Sanan   /* Handle DMDA parallel distribution */
319566063dSJacob Faibussowitsch   PetscCall(PetscOptionsBoundedInt("-da_processors_x", "Number of processors in x direction", "DMDASetNumProcs", dd->m, &dd->m, NULL, PETSC_DECIDE));
329566063dSJacob Faibussowitsch   if (dim > 1) PetscCall(PetscOptionsBoundedInt("-da_processors_y", "Number of processors in y direction", "DMDASetNumProcs", dd->n, &dd->n, NULL, PETSC_DECIDE));
339566063dSJacob Faibussowitsch   if (dim > 2) PetscCall(PetscOptionsBoundedInt("-da_processors_z", "Number of processors in z direction", "DMDASetNumProcs", dd->p, &dd->p, NULL, PETSC_DECIDE));
34fe58071bSMatthew G. Knepley   // Handle boundaries
35fe58071bSMatthew G. Knepley   PetscCall(PetscOptionsEnum("-da_bd_x", "Boundary type for x direction", "DMDASetBoundaryType", DMBoundaryTypes, (PetscEnum)dd->bx, (PetscEnum *)&dd->bx, NULL));
36fe58071bSMatthew G. Knepley   if (dim > 1) PetscCall(PetscOptionsEnum("-da_bd_y", "Boundary type for y direction", "DMDASetBoundaryType", DMBoundaryTypes, (PetscEnum)dd->by, (PetscEnum *)&dd->by, NULL));
37fe58071bSMatthew G. Knepley   if (dim > 2) PetscCall(PetscOptionsEnum("-da_bd_z", "Boundary type for z direction", "DMDASetBoundaryType", DMBoundaryTypes, (PetscEnum)dd->bz, (PetscEnum *)&dd->bz, NULL));
38fe58071bSMatthew G. Knepley   PetscCall(PetscOptionsEnum("-da_bd_all", "Boundary type for every direction", "DMDASetBoundaryType", DMBoundaryTypes, (PetscEnum)bt, (PetscEnum *)&bt, &flg));
39fe58071bSMatthew G. Knepley   if (flg) PetscCall(DMDASetBoundaryType(da, bt, bt, bt));
40aa219208SBarry Smith   /* Handle DMDA refinement */
419566063dSJacob Faibussowitsch   PetscCall(PetscOptionsBoundedInt("-da_refine_x", "Refinement ratio in x direction", "DMDASetRefinementFactor", dd->refine_x, &dd->refine_x, NULL, 1));
429566063dSJacob Faibussowitsch   if (dim > 1) PetscCall(PetscOptionsBoundedInt("-da_refine_y", "Refinement ratio in y direction", "DMDASetRefinementFactor", dd->refine_y, &dd->refine_y, NULL, 1));
439566063dSJacob Faibussowitsch   if (dim > 2) PetscCall(PetscOptionsBoundedInt("-da_refine_z", "Refinement ratio in z direction", "DMDASetRefinementFactor", dd->refine_z, &dd->refine_z, NULL, 1));
449371c9d4SSatish Balay   dd->coarsen_x = dd->refine_x;
459371c9d4SSatish Balay   dd->coarsen_y = dd->refine_y;
469371c9d4SSatish Balay   dd->coarsen_z = dd->refine_z;
4747c6ae99SBarry Smith 
48397b6216SJed Brown   /* Get refinement factors, defaults taken from the coarse DMDA */
499566063dSJacob Faibussowitsch   PetscCall(DMDAGetRefinementFactor(da, &refx[0], &refy[0], &refz[0]));
50397b6216SJed Brown   for (i = 1; i < maxnlevels; i++) {
51397b6216SJed Brown     refx[i] = refx[0];
52397b6216SJed Brown     refy[i] = refy[0];
53397b6216SJed Brown     refz[i] = refz[0];
54397b6216SJed Brown   }
55397b6216SJed Brown   n = maxnlevels;
569566063dSJacob Faibussowitsch   PetscCall(PetscOptionsIntArray("-da_refine_hierarchy_x", "Refinement factor for each level", "None", refx, &n, &flg));
57897f7067SBarry Smith   if (flg) {
58897f7067SBarry Smith     dd->refine_x        = refx[0];
59897f7067SBarry Smith     dd->refine_x_hier_n = n;
609566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(n, &dd->refine_x_hier));
619566063dSJacob Faibussowitsch     PetscCall(PetscArraycpy(dd->refine_x_hier, refx, n));
62897f7067SBarry Smith   }
63c73cfb54SMatthew G. Knepley   if (dim > 1) {
64397b6216SJed Brown     n = maxnlevels;
659566063dSJacob Faibussowitsch     PetscCall(PetscOptionsIntArray("-da_refine_hierarchy_y", "Refinement factor for each level", "None", refy, &n, &flg));
66897f7067SBarry Smith     if (flg) {
67897f7067SBarry Smith       dd->refine_y        = refy[0];
68897f7067SBarry Smith       dd->refine_y_hier_n = n;
699566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(n, &dd->refine_y_hier));
709566063dSJacob Faibussowitsch       PetscCall(PetscArraycpy(dd->refine_y_hier, refy, n));
71897f7067SBarry Smith     }
72397b6216SJed Brown   }
73c73cfb54SMatthew G. Knepley   if (dim > 2) {
74397b6216SJed Brown     n = maxnlevels;
759566063dSJacob Faibussowitsch     PetscCall(PetscOptionsIntArray("-da_refine_hierarchy_z", "Refinement factor for each level", "None", refz, &n, &flg));
76897f7067SBarry Smith     if (flg) {
77897f7067SBarry Smith       dd->refine_z        = refz[0];
78897f7067SBarry Smith       dd->refine_z_hier_n = n;
799566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(n, &dd->refine_z_hier));
809566063dSJacob Faibussowitsch       PetscCall(PetscArraycpy(dd->refine_z_hier, refz, n));
81897f7067SBarry Smith     }
82397b6216SJed Brown   }
83397b6216SJed Brown 
849566063dSJacob Faibussowitsch   PetscCall(PetscOptionsBoundedInt("-da_refine", "Uniformly refine DA one or more times", "None", refine, &refine, NULL, 0));
85d0609cedSBarry Smith   PetscOptionsHeadEnd();
86235683edSBarry Smith 
87e0f5d30fSBarry Smith   while (refine--) {
88bff4a2f0SMatthew G. Knepley     if (dd->bx == DM_BOUNDARY_PERIODIC || dd->interptype == DMDA_Q0) {
897a3b7fd5SBarry Smith       PetscCall(PetscIntMultError(dd->refine_x, dd->M, &dd->M));
90e0f5d30fSBarry Smith     } else {
917a3b7fd5SBarry Smith       PetscCall(PetscIntMultError(dd->refine_x, dd->M - 1, &dd->M));
927a3b7fd5SBarry Smith       dd->M += 1;
93e0f5d30fSBarry Smith     }
94*42e65cf2SBarry Smith     if (dim > 1 && (dd->by == DM_BOUNDARY_PERIODIC || dd->interptype == DMDA_Q0)) {
957a3b7fd5SBarry Smith       PetscCall(PetscIntMultError(dd->refine_y, dd->N, &dd->N));
96*42e65cf2SBarry Smith     } else if (dim > 1) {
977a3b7fd5SBarry Smith       PetscCall(PetscIntMultError(dd->refine_y, dd->N - 1, &dd->N));
987a3b7fd5SBarry Smith       dd->N += 1;
99e0f5d30fSBarry Smith     }
100*42e65cf2SBarry Smith     if (dim > 2 && (dd->bz == DM_BOUNDARY_PERIODIC || dd->interptype == DMDA_Q0)) {
1017a3b7fd5SBarry Smith       PetscCall(PetscIntMultError(dd->refine_z, dd->P, &dd->P));
102*42e65cf2SBarry Smith     } else if (dim > 2) {
1037a3b7fd5SBarry Smith       PetscCall(PetscIntMultError(dd->refine_z, dd->P - 1, &dd->P));
1047a3b7fd5SBarry Smith       dd->P += 1;
105e0f5d30fSBarry Smith     }
106e0f5d30fSBarry Smith     da->levelup++;
10785fc4b34SJed Brown     if (da->levelup - da->leveldown >= 0) {
10885fc4b34SJed Brown       dd->refine_x = refx[da->levelup - da->leveldown];
10985fc4b34SJed Brown       dd->refine_y = refy[da->levelup - da->leveldown];
11085fc4b34SJed Brown       dd->refine_z = refz[da->levelup - da->leveldown];
11185fc4b34SJed Brown     }
11285fc4b34SJed Brown     if (da->levelup - da->leveldown >= 1) {
11385fc4b34SJed Brown       dd->coarsen_x = refx[da->levelup - da->leveldown - 1];
11485fc4b34SJed Brown       dd->coarsen_y = refy[da->levelup - da->leveldown - 1];
11585fc4b34SJed Brown       dd->coarsen_z = refz[da->levelup - da->leveldown - 1];
11685fc4b34SJed Brown     }
117e0f5d30fSBarry Smith   }
1183ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
11947c6ae99SBarry Smith }
12047c6ae99SBarry Smith 
121ba38deedSJacob Faibussowitsch static PetscErrorCode DMLoad_DA(DM da, PetscViewer viewer)
122d71ae5a4SJacob Faibussowitsch {
123060da220SMatthew G. Knepley   PetscInt        dim, m, n, p, dof, swidth;
124b859378eSBarry Smith   DMDAStencilType stencil;
125bff4a2f0SMatthew G. Knepley   DMBoundaryType  bx, by, bz;
126bc2bf880SBarry Smith   PetscBool       coors;
127bc2bf880SBarry Smith   DM              dac;
128bc2bf880SBarry Smith   Vec             c;
129b859378eSBarry Smith 
130b859378eSBarry Smith   PetscFunctionBegin;
1319566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryRead(viewer, &dim, 1, NULL, PETSC_INT));
1329566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryRead(viewer, &m, 1, NULL, PETSC_INT));
1339566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryRead(viewer, &n, 1, NULL, PETSC_INT));
1349566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryRead(viewer, &p, 1, NULL, PETSC_INT));
1359566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryRead(viewer, &dof, 1, NULL, PETSC_INT));
1369566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryRead(viewer, &swidth, 1, NULL, PETSC_INT));
1379566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryRead(viewer, &bx, 1, NULL, PETSC_ENUM));
1389566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryRead(viewer, &by, 1, NULL, PETSC_ENUM));
1399566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryRead(viewer, &bz, 1, NULL, PETSC_ENUM));
1409566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryRead(viewer, &stencil, 1, NULL, PETSC_ENUM));
141b859378eSBarry Smith 
1429566063dSJacob Faibussowitsch   PetscCall(DMSetDimension(da, dim));
1439566063dSJacob Faibussowitsch   PetscCall(DMDASetSizes(da, m, n, p));
1449566063dSJacob Faibussowitsch   PetscCall(DMDASetBoundaryType(da, bx, by, bz));
1459566063dSJacob Faibussowitsch   PetscCall(DMDASetDof(da, dof));
1469566063dSJacob Faibussowitsch   PetscCall(DMDASetStencilType(da, stencil));
1479566063dSJacob Faibussowitsch   PetscCall(DMDASetStencilWidth(da, swidth));
1489566063dSJacob Faibussowitsch   PetscCall(DMSetUp(da));
1499566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryRead(viewer, &coors, 1, NULL, PETSC_ENUM));
150bc2bf880SBarry Smith   if (coors) {
1519566063dSJacob Faibussowitsch     PetscCall(DMGetCoordinateDM(da, &dac));
1529566063dSJacob Faibussowitsch     PetscCall(DMCreateGlobalVector(dac, &c));
1539566063dSJacob Faibussowitsch     PetscCall(VecLoad(c, viewer));
1549566063dSJacob Faibussowitsch     PetscCall(DMSetCoordinates(da, c));
1559566063dSJacob Faibussowitsch     PetscCall(VecDestroy(&c));
156bc2bf880SBarry Smith   }
1573ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
158b859378eSBarry Smith }
159b859378eSBarry Smith 
160ba38deedSJacob Faibussowitsch static PetscErrorCode DMCreateSubDM_DA(DM dm, PetscInt numFields, const PetscInt fields[], IS *is, DM *subdm)
161d71ae5a4SJacob Faibussowitsch {
162d724dfffSBarry Smith   DM_DA *da = (DM_DA *)dm->data;
163d724dfffSBarry Smith 
164d724dfffSBarry Smith   PetscFunctionBegin;
165d724dfffSBarry Smith   if (subdm) {
166c38c1269SMatthew G. Knepley     PetscSF sf;
167c38c1269SMatthew G. Knepley     Vec     coords;
168c38c1269SMatthew G. Knepley     void   *ctx;
169c38c1269SMatthew G. Knepley     /* Cannot use DMClone since the dof stuff is mixed in. Ugh
1709566063dSJacob Faibussowitsch     PetscCall(DMClone(dm, subdm)); */
1719566063dSJacob Faibussowitsch     PetscCall(DMCreate(PetscObjectComm((PetscObject)dm), subdm));
1729566063dSJacob Faibussowitsch     PetscCall(DMGetPointSF(dm, &sf));
1739566063dSJacob Faibussowitsch     PetscCall(DMSetPointSF(*subdm, sf));
1749566063dSJacob Faibussowitsch     PetscCall(DMGetApplicationContext(dm, &ctx));
1759566063dSJacob Faibussowitsch     PetscCall(DMSetApplicationContext(*subdm, ctx));
1769566063dSJacob Faibussowitsch     PetscCall(DMGetCoordinatesLocal(dm, &coords));
177c38c1269SMatthew G. Knepley     if (coords) {
1789566063dSJacob Faibussowitsch       PetscCall(DMSetCoordinatesLocal(*subdm, coords));
179c38c1269SMatthew G. Knepley     } else {
1809566063dSJacob Faibussowitsch       PetscCall(DMGetCoordinates(dm, &coords));
1819566063dSJacob Faibussowitsch       if (coords) PetscCall(DMSetCoordinates(*subdm, coords));
182c38c1269SMatthew G. Knepley     }
183c38c1269SMatthew G. Knepley 
1849566063dSJacob Faibussowitsch     PetscCall(DMSetType(*subdm, DMDA));
1859566063dSJacob Faibussowitsch     PetscCall(DMSetDimension(*subdm, dm->dim));
1869566063dSJacob Faibussowitsch     PetscCall(DMDASetSizes(*subdm, da->M, da->N, da->P));
1879566063dSJacob Faibussowitsch     PetscCall(DMDASetNumProcs(*subdm, da->m, da->n, da->p));
1889566063dSJacob Faibussowitsch     PetscCall(DMDASetBoundaryType(*subdm, da->bx, da->by, da->bz));
1899566063dSJacob Faibussowitsch     PetscCall(DMDASetDof(*subdm, numFields));
1909566063dSJacob Faibussowitsch     PetscCall(DMDASetStencilType(*subdm, da->stencil_type));
1919566063dSJacob Faibussowitsch     PetscCall(DMDASetStencilWidth(*subdm, da->s));
1929566063dSJacob Faibussowitsch     PetscCall(DMDASetOwnershipRanges(*subdm, da->lx, da->ly, da->lz));
193d724dfffSBarry Smith   }
194d724dfffSBarry Smith   if (is) {
195d724dfffSBarry Smith     PetscInt *indices, cnt = 0, dof = da->w, i, j;
19638221697SMatthew G. Knepley 
1979566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(da->Nlocal * numFields / dof, &indices));
19838221697SMatthew G. Knepley     for (i = da->base / dof; i < (da->base + da->Nlocal) / dof; ++i) {
199ad540459SPierre Jolivet       for (j = 0; j < numFields; ++j) indices[cnt++] = dof * i + fields[j];
200d724dfffSBarry Smith     }
20163a3b9bcSJacob Faibussowitsch     PetscCheck(cnt == da->Nlocal * numFields / dof, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Count %" PetscInt_FMT " does not equal expected value %" PetscInt_FMT, cnt, da->Nlocal * numFields / dof);
2029566063dSJacob Faibussowitsch     PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)dm), cnt, indices, PETSC_OWN_POINTER, is));
203d724dfffSBarry Smith   }
2043ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
205d724dfffSBarry Smith }
206d724dfffSBarry Smith 
207ba38deedSJacob Faibussowitsch static PetscErrorCode DMCreateFieldDecomposition_DA(DM dm, PetscInt *len, char ***namelist, IS **islist, DM **dmlist)
208d71ae5a4SJacob Faibussowitsch {
2091c3fb106SBarry Smith   PetscInt i;
2101c3fb106SBarry Smith   DM_DA   *dd  = (DM_DA *)dm->data;
2111c3fb106SBarry Smith   PetscInt dof = dd->w;
2121c3fb106SBarry Smith 
2131c3fb106SBarry Smith   PetscFunctionBegin;
214731c8d9eSDmitry Karpeev   if (len) *len = dof;
2151c3fb106SBarry Smith   if (islist) {
2161c3fb106SBarry Smith     Vec      v;
2171c3fb106SBarry Smith     PetscInt rstart, n;
2181c3fb106SBarry Smith 
2199566063dSJacob Faibussowitsch     PetscCall(DMGetGlobalVector(dm, &v));
2209566063dSJacob Faibussowitsch     PetscCall(VecGetOwnershipRange(v, &rstart, NULL));
2219566063dSJacob Faibussowitsch     PetscCall(VecGetLocalSize(v, &n));
2229566063dSJacob Faibussowitsch     PetscCall(DMRestoreGlobalVector(dm, &v));
2239566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(dof, islist));
22448a46eb9SPierre Jolivet     for (i = 0; i < dof; i++) PetscCall(ISCreateStride(PetscObjectComm((PetscObject)dm), n / dof, rstart + i, dof, &(*islist)[i]));
2251c3fb106SBarry Smith   }
2261c3fb106SBarry Smith   if (namelist) {
2279566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(dof, namelist));
2281c3fb106SBarry Smith     if (dd->fieldname) {
22948a46eb9SPierre Jolivet       for (i = 0; i < dof; i++) PetscCall(PetscStrallocpy(dd->fieldname[i], &(*namelist)[i]));
2301c3fb106SBarry Smith     } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_SUP, "Currently DMDA must have fieldnames");
2311c3fb106SBarry Smith   }
2321c3fb106SBarry Smith   if (dmlist) {
2331c3fb106SBarry Smith     DM da;
2341c3fb106SBarry Smith 
2359566063dSJacob Faibussowitsch     PetscCall(DMDACreate(PetscObjectComm((PetscObject)dm), &da));
2369566063dSJacob Faibussowitsch     PetscCall(DMSetDimension(da, dm->dim));
2379566063dSJacob Faibussowitsch     PetscCall(DMDASetSizes(da, dd->M, dd->N, dd->P));
2389566063dSJacob Faibussowitsch     PetscCall(DMDASetNumProcs(da, dd->m, dd->n, dd->p));
2399566063dSJacob Faibussowitsch     PetscCall(DMDASetBoundaryType(da, dd->bx, dd->by, dd->bz));
2409566063dSJacob Faibussowitsch     PetscCall(DMDASetDof(da, 1));
2419566063dSJacob Faibussowitsch     PetscCall(DMDASetStencilType(da, dd->stencil_type));
2429566063dSJacob Faibussowitsch     PetscCall(DMDASetStencilWidth(da, dd->s));
2439566063dSJacob Faibussowitsch     PetscCall(DMSetUp(da));
2449566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(dof, dmlist));
2459566063dSJacob Faibussowitsch     for (i = 0; i < dof - 1; i++) PetscCall(PetscObjectReference((PetscObject)da));
2461c3fb106SBarry Smith     for (i = 0; i < dof; i++) (*dmlist)[i] = da;
2471c3fb106SBarry Smith   }
2483ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2491c3fb106SBarry Smith }
2501c3fb106SBarry Smith 
251ba38deedSJacob Faibussowitsch static PetscErrorCode DMClone_DA(DM dm, DM *newdm)
252d71ae5a4SJacob Faibussowitsch {
25338221697SMatthew G. Knepley   DM_DA *da = (DM_DA *)dm->data;
25438221697SMatthew G. Knepley 
25538221697SMatthew G. Knepley   PetscFunctionBegin;
2569566063dSJacob Faibussowitsch   PetscCall(DMSetType(*newdm, DMDA));
2579566063dSJacob Faibussowitsch   PetscCall(DMSetDimension(*newdm, dm->dim));
2589566063dSJacob Faibussowitsch   PetscCall(DMDASetSizes(*newdm, da->M, da->N, da->P));
2599566063dSJacob Faibussowitsch   PetscCall(DMDASetNumProcs(*newdm, da->m, da->n, da->p));
2609566063dSJacob Faibussowitsch   PetscCall(DMDASetBoundaryType(*newdm, da->bx, da->by, da->bz));
2619566063dSJacob Faibussowitsch   PetscCall(DMDASetDof(*newdm, da->w));
2629566063dSJacob Faibussowitsch   PetscCall(DMDASetStencilType(*newdm, da->stencil_type));
2639566063dSJacob Faibussowitsch   PetscCall(DMDASetStencilWidth(*newdm, da->s));
2649566063dSJacob Faibussowitsch   PetscCall(DMDASetOwnershipRanges(*newdm, da->lx, da->ly, da->lz));
2659566063dSJacob Faibussowitsch   PetscCall(DMSetUp(*newdm));
2663ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
26738221697SMatthew G. Knepley }
26838221697SMatthew G. Knepley 
269d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMHasCreateInjection_DA(DM dm, PetscBool *flg)
270d71ae5a4SJacob Faibussowitsch {
2714a7a4c06SLawrence Mitchell   DM_DA *da = (DM_DA *)dm->data;
2724a7a4c06SLawrence Mitchell 
2734a7a4c06SLawrence Mitchell   PetscFunctionBegin;
2744a7a4c06SLawrence Mitchell   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
2754f572ea9SToby Isaac   PetscAssertPointer(flg, 2);
276131f56ebSLawrence Mitchell   *flg = da->interptype == DMDA_Q1 ? PETSC_TRUE : PETSC_FALSE;
2773ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2784a7a4c06SLawrence Mitchell }
2794a7a4c06SLawrence Mitchell 
280d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMGetDimPoints_DA(DM dm, PetscInt dim, PetscInt *pStart, PetscInt *pEnd)
281d71ae5a4SJacob Faibussowitsch {
282793f3fe5SMatthew G. Knepley   PetscFunctionBegin;
2839566063dSJacob Faibussowitsch   PetscCall(DMDAGetDepthStratum(dm, dim, pStart, pEnd));
2843ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
285793f3fe5SMatthew G. Knepley }
286793f3fe5SMatthew G. Knepley 
287d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMGetNeighbors_DA(DM dm, PetscInt *nranks, const PetscMPIInt *ranks[])
288d71ae5a4SJacob Faibussowitsch {
289502a2867SDave May   PetscInt        dim;
290502a2867SDave May   DMDAStencilType st;
291502a2867SDave May 
292502a2867SDave May   PetscFunctionBegin;
2939566063dSJacob Faibussowitsch   PetscCall(DMDAGetNeighbors(dm, ranks));
2949566063dSJacob Faibussowitsch   PetscCall(DMDAGetInfo(dm, &dim, NULL, NULL, NULL, NULL, NULL, NULL, NULL, NULL, NULL, NULL, NULL, &st));
295502a2867SDave May 
296502a2867SDave May   switch (dim) {
297502a2867SDave May   case 1:
298502a2867SDave May     *nranks = 3;
299ad540459SPierre Jolivet     /* if (st == DMDA_STENCIL_STAR) *nranks = 3; */
300502a2867SDave May     break;
301502a2867SDave May   case 2:
302502a2867SDave May     *nranks = 9;
303ad540459SPierre Jolivet     /* if (st == DMDA_STENCIL_STAR) *nranks = 5; */
304502a2867SDave May     break;
305502a2867SDave May   case 3:
306502a2867SDave May     *nranks = 27;
307ad540459SPierre Jolivet     /* if (st == DMDA_STENCIL_STAR) *nranks = 7; */
308502a2867SDave May     break;
309d71ae5a4SJacob Faibussowitsch   default:
310d71ae5a4SJacob Faibussowitsch     break;
311502a2867SDave May   }
3123ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
313502a2867SDave May }
314502a2867SDave May 
3153efe6655SBarry Smith /*MC
316dce8aebaSBarry Smith    DMDA = "da" - A `DM` object that is used to manage data for a structured grid in 1, 2, or 3 dimensions.
3173efe6655SBarry Smith          In the global representation of the vector each process stores a non-overlapping rectangular (or slab in 3d) portion of the grid points.
31812b4a537SBarry Smith          In the local representation these rectangular regions (slabs) are extended in all directions by a stencil width set with `DMDASetStencilWidth()`.
3193efe6655SBarry Smith 
3203efe6655SBarry Smith          The vectors can be thought of as either cell centered or vertex centered on the mesh. But some variables cannot be cell centered and others
32112b4a537SBarry Smith          vertex centered; see the documentation for `DMSTAG`, a similar `DM` implementation which supports more general staggered grids.
3223efe6655SBarry Smith 
3233efe6655SBarry Smith   Level: intermediate
3243efe6655SBarry Smith 
32512b4a537SBarry Smith .seealso: [](sec_struct), `DMType`, `DMCOMPOSITE`, `DMSTAG`, `DMDACreate()`, `DMCreate()`, `DMSetType()`, `DMDASetStencilWidth()`, `DMDASetStencilType()`,
32612b4a537SBarry Smith           `DMDAStencilType`
3273efe6655SBarry Smith M*/
3283efe6655SBarry Smith 
329d71ae5a4SJacob Faibussowitsch PETSC_EXTERN PetscErrorCode DMCreate_DA(DM da)
330d71ae5a4SJacob Faibussowitsch {
33147c6ae99SBarry Smith   DM_DA *dd;
33247c6ae99SBarry Smith 
33347c6ae99SBarry Smith   PetscFunctionBegin;
3344f572ea9SToby Isaac   PetscAssertPointer(da, 1);
3354dfa11a4SJacob Faibussowitsch   PetscCall(PetscNew(&dd));
336a4121054SBarry Smith   da->data = dd;
33747c6ae99SBarry Smith 
338c73cfb54SMatthew G. Knepley   da->dim        = -1;
339aa219208SBarry Smith   dd->interptype = DMDA_Q1;
34047c6ae99SBarry Smith   dd->refine_x   = 2;
34147c6ae99SBarry Smith   dd->refine_y   = 2;
34247c6ae99SBarry Smith   dd->refine_z   = 2;
34381c108dcSJed Brown   dd->coarsen_x  = 2;
34481c108dcSJed Brown   dd->coarsen_y  = 2;
34581c108dcSJed Brown   dd->coarsen_z  = 2;
3460298fd71SBarry Smith   dd->fieldname  = NULL;
34747c6ae99SBarry Smith   dd->nlocal     = -1;
34847c6ae99SBarry Smith   dd->Nlocal     = -1;
34947c6ae99SBarry Smith   dd->M          = -1;
35047c6ae99SBarry Smith   dd->N          = -1;
35147c6ae99SBarry Smith   dd->P          = -1;
35247c6ae99SBarry Smith   dd->m          = -1;
35347c6ae99SBarry Smith   dd->n          = -1;
35447c6ae99SBarry Smith   dd->p          = -1;
35547c6ae99SBarry Smith   dd->w          = -1;
35647c6ae99SBarry Smith   dd->s          = -1;
3578865f1eaSKarl Rupp 
3589371c9d4SSatish Balay   dd->xs = -1;
3599371c9d4SSatish Balay   dd->xe = -1;
3609371c9d4SSatish Balay   dd->ys = -1;
3619371c9d4SSatish Balay   dd->ye = -1;
3629371c9d4SSatish Balay   dd->zs = -1;
3639371c9d4SSatish Balay   dd->ze = -1;
3649371c9d4SSatish Balay   dd->Xs = -1;
3659371c9d4SSatish Balay   dd->Xe = -1;
3669371c9d4SSatish Balay   dd->Ys = -1;
3679371c9d4SSatish Balay   dd->Ye = -1;
3689371c9d4SSatish Balay   dd->Zs = -1;
3699371c9d4SSatish Balay   dd->Ze = -1;
37047c6ae99SBarry Smith 
3713e7870d2SPeter Brune   dd->Nsub = 1;
3727ddda789SPeter Brune   dd->xol  = 0;
3737ddda789SPeter Brune   dd->yol  = 0;
3747ddda789SPeter Brune   dd->zol  = 0;
375d886c4f4SPeter Brune   dd->xo   = 0;
376d886c4f4SPeter Brune   dd->yo   = 0;
377d886c4f4SPeter Brune   dd->zo   = 0;
378e30e807fSPeter Brune   dd->Mo   = -1;
379e30e807fSPeter Brune   dd->No   = -1;
380e30e807fSPeter Brune   dd->Po   = -1;
38188661749SPeter Brune 
3820298fd71SBarry Smith   dd->gtol = NULL;
3830298fd71SBarry Smith   dd->ltol = NULL;
3840298fd71SBarry Smith   dd->ao   = NULL;
3853ba16761SJacob Faibussowitsch   PetscCall(PetscStrallocpy(AOBASIC, (char **)&dd->aotype));
38647c6ae99SBarry Smith   dd->base         = -1;
387bff4a2f0SMatthew G. Knepley   dd->bx           = DM_BOUNDARY_NONE;
388bff4a2f0SMatthew G. Knepley   dd->by           = DM_BOUNDARY_NONE;
389bff4a2f0SMatthew G. Knepley   dd->bz           = DM_BOUNDARY_NONE;
390aa219208SBarry Smith   dd->stencil_type = DMDA_STENCIL_BOX;
391aa219208SBarry Smith   dd->interptype   = DMDA_Q1;
3920298fd71SBarry Smith   dd->lx           = NULL;
3930298fd71SBarry Smith   dd->ly           = NULL;
3940298fd71SBarry Smith   dd->lz           = NULL;
39547c6ae99SBarry Smith 
396454e267fSLisandro Dalcin   dd->elementtype = DMDA_ELEMENT_Q1;
397454e267fSLisandro Dalcin 
398a4121054SBarry Smith   da->ops->globaltolocalbegin        = DMGlobalToLocalBegin_DA;
399a4121054SBarry Smith   da->ops->globaltolocalend          = DMGlobalToLocalEnd_DA;
400a4121054SBarry Smith   da->ops->localtoglobalbegin        = DMLocalToGlobalBegin_DA;
401a4121054SBarry Smith   da->ops->localtoglobalend          = DMLocalToGlobalEnd_DA;
402d78e899eSRichard Tran Mills   da->ops->localtolocalbegin         = DMLocalToLocalBegin_DA;
403d78e899eSRichard Tran Mills   da->ops->localtolocalend           = DMLocalToLocalEnd_DA;
404a4121054SBarry Smith   da->ops->createglobalvector        = DMCreateGlobalVector_DA;
405a4121054SBarry Smith   da->ops->createlocalvector         = DMCreateLocalVector_DA;
40625296bd5SBarry Smith   da->ops->createinterpolation       = DMCreateInterpolation_DA;
407e727c939SJed Brown   da->ops->getcoloring               = DMCreateColoring_DA;
40825296bd5SBarry Smith   da->ops->creatematrix              = DMCreateMatrix_DA;
409a4121054SBarry Smith   da->ops->refine                    = DMRefine_DA;
410a4121054SBarry Smith   da->ops->coarsen                   = DMCoarsen_DA;
411a4121054SBarry Smith   da->ops->refinehierarchy           = DMRefineHierarchy_DA;
412a4121054SBarry Smith   da->ops->coarsenhierarchy          = DMCoarsenHierarchy_DA;
4135a84ad33SLisandro Dalcin   da->ops->createinjection           = DMCreateInjection_DA;
4144a7a4c06SLawrence Mitchell   da->ops->hascreateinjection        = DMHasCreateInjection_DA;
415a4121054SBarry Smith   da->ops->destroy                   = DMDestroy_DA;
416ea78f98cSLisandro Dalcin   da->ops->view                      = NULL;
417a4121054SBarry Smith   da->ops->setfromoptions            = DMSetFromOptions_DA;
418a4121054SBarry Smith   da->ops->setup                     = DMSetUp_DA;
41938221697SMatthew G. Knepley   da->ops->clone                     = DMClone_DA;
420b859378eSBarry Smith   da->ops->load                      = DMLoad_DA;
4216636e97aSMatthew G Knepley   da->ops->createcoordinatedm        = DMCreateCoordinateDM_DA;
422d724dfffSBarry Smith   da->ops->createsubdm               = DMCreateSubDM_DA;
42316621825SDmitry Karpeev   da->ops->createfielddecomposition  = DMCreateFieldDecomposition_DA;
424e30e807fSPeter Brune   da->ops->createdomaindecomposition = DMCreateDomainDecomposition_DA;
425e30e807fSPeter Brune   da->ops->createddscatters          = DMCreateDomainDecompositionScatters_DA;
426793f3fe5SMatthew G. Knepley   da->ops->getdimpoints              = DMGetDimPoints_DA;
427502a2867SDave May   da->ops->getneighbors              = DMGetNeighbors_DA;
4286c6a6b79SMatthew G. Knepley   da->ops->getlocalboundingbox       = DMGetLocalBoundingBox_DA;
42905264a50SDave May   da->ops->locatepoints              = DMLocatePoints_DA_Regular;
4307c3cd84eSPatrick Sanan   da->ops->getcompatibility          = DMGetCompatibility_DA;
4319566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)da, "DMSetUpGLVisViewer_C", DMSetUpGLVisViewer_DMDA));
4323ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
433a4121054SBarry Smith }
43447c6ae99SBarry Smith 
435a4121054SBarry Smith /*@
43612b4a537SBarry Smith   DMDACreate - Creates a `DMDA` object for managing structured grids.
437a4121054SBarry Smith 
4385edebc4bSPatrick Sanan   Collective
439a4121054SBarry Smith 
440a4121054SBarry Smith   Input Parameter:
44112b4a537SBarry Smith . comm - The communicator for the `DMDA` object
442a4121054SBarry Smith 
443a4121054SBarry Smith   Output Parameter:
44472fd0fbdSBarry Smith . da - the `DMDA` object
445a4121054SBarry Smith 
446e0f5d30fSBarry Smith   Level: advanced
447e0f5d30fSBarry Smith 
44872fd0fbdSBarry Smith   Notes:
44972fd0fbdSBarry Smith   See [](sec_struct) for details on the construction of a `DMDA`
450a4121054SBarry Smith 
45172fd0fbdSBarry Smith   `DMDACreate1d()`, `DMDACreate2d()`, and `DMDACreate3d()` are convenience routines to quickly completely create a `DMDA`
45272fd0fbdSBarry Smith 
45372fd0fbdSBarry Smith .seealso: [](sec_struct), `DM`, `DMDA`, `DMSetUp()`, `DMDASetSizes()`, `DMClone()`, `DMDACreate1d()`, `DMDACreate2d()`, `DMDACreate3d()`
454a4121054SBarry Smith @*/
455d71ae5a4SJacob Faibussowitsch PetscErrorCode DMDACreate(MPI_Comm comm, DM *da)
456d71ae5a4SJacob Faibussowitsch {
457a4121054SBarry Smith   PetscFunctionBegin;
4584f572ea9SToby Isaac   PetscAssertPointer(da, 2);
4599566063dSJacob Faibussowitsch   PetscCall(DMCreate(comm, da));
4609566063dSJacob Faibussowitsch   PetscCall(DMSetType(*da, DMDA));
4613ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
46247c6ae99SBarry Smith }
463