1af0996ceSBarry Smith #include <petsc/private/dmdaimpl.h> /*I "petscdmda.h" I*/ 247c6ae99SBarry Smith 3ba38deedSJacob Faibussowitsch static PetscErrorCode DMSetFromOptions_DA(DM da, PetscOptionItems *PetscOptionsObject) 4d71ae5a4SJacob Faibussowitsch { 547c6ae99SBarry Smith DM_DA *dd = (DM_DA *)da->data; 6c73cfb54SMatthew G. Knepley PetscInt refine = 0, dim = da->dim, maxnlevels = 100, refx[100], refy[100], refz[100], n, i; 7fe58071bSMatthew G. Knepley DMBoundaryType bt = DM_BOUNDARY_NONE; 8897f7067SBarry Smith PetscBool flg; 947c6ae99SBarry Smith 1047c6ae99SBarry Smith PetscFunctionBegin; 118e704042SBarry Smith PetscCheck(!da->setupcalled, PetscObjectComm((PetscObject)da), PETSC_ERR_ARG_WRONGSTATE, "Cannot call DMSetFromOptions() after DMSetUp() for DMDA"); 1208401ef6SPierre Jolivet PetscCheck(dd->M >= 0, PetscObjectComm((PetscObject)da), PETSC_ERR_ARG_OUTOFRANGE, "Dimension must be non-negative, call DMSetFromOptions() if you want to change the value at runtime"); 1308401ef6SPierre Jolivet PetscCheck(dd->N >= 0, PetscObjectComm((PetscObject)da), PETSC_ERR_ARG_OUTOFRANGE, "Dimension must be non-negative, call DMSetFromOptions() if you want to change the value at runtime"); 1408401ef6SPierre Jolivet PetscCheck(dd->P >= 0, PetscObjectComm((PetscObject)da), PETSC_ERR_ARG_OUTOFRANGE, "Dimension must be non-negative, call DMSetFromOptions() if you want to change the value at runtime"); 15235683edSBarry Smith 16d0609cedSBarry Smith PetscOptionsHeadBegin(PetscOptionsObject, "DMDA Options"); 179566063dSJacob Faibussowitsch PetscCall(PetscOptionsBoundedInt("-da_grid_x", "Number of grid points in x direction", "DMDASetSizes", dd->M, &dd->M, NULL, 1)); 189566063dSJacob Faibussowitsch if (dim > 1) PetscCall(PetscOptionsBoundedInt("-da_grid_y", "Number of grid points in y direction", "DMDASetSizes", dd->N, &dd->N, NULL, 1)); 199566063dSJacob Faibussowitsch if (dim > 2) PetscCall(PetscOptionsBoundedInt("-da_grid_z", "Number of grid points in z direction", "DMDASetSizes", dd->P, &dd->P, NULL, 1)); 207ddda789SPeter Brune 219566063dSJacob Faibussowitsch PetscCall(PetscOptionsBoundedInt("-da_overlap", "Decomposition overlap in all directions", "DMDASetOverlap", dd->xol, &dd->xol, &flg, 0)); 229566063dSJacob Faibussowitsch if (flg) PetscCall(DMDASetOverlap(da, dd->xol, dd->xol, dd->xol)); 239566063dSJacob Faibussowitsch PetscCall(PetscOptionsBoundedInt("-da_overlap_x", "Decomposition overlap in x direction", "DMDASetOverlap", dd->xol, &dd->xol, NULL, 0)); 249566063dSJacob Faibussowitsch if (dim > 1) PetscCall(PetscOptionsBoundedInt("-da_overlap_y", "Decomposition overlap in y direction", "DMDASetOverlap", dd->yol, &dd->yol, NULL, 0)); 259566063dSJacob Faibussowitsch if (dim > 2) PetscCall(PetscOptionsBoundedInt("-da_overlap_z", "Decomposition overlap in z direction", "DMDASetOverlap", dd->zol, &dd->zol, NULL, 0)); 263e7870d2SPeter Brune 279566063dSJacob Faibussowitsch PetscCall(PetscOptionsBoundedInt("-da_local_subdomains", "", "DMDASetNumLocalSubdomains", dd->Nsub, &dd->Nsub, &flg, PETSC_DECIDE)); 289566063dSJacob Faibussowitsch if (flg) PetscCall(DMDASetNumLocalSubDomains(da, dd->Nsub)); 293e7870d2SPeter Brune 308d07fd27SPatrick Sanan /* Handle DMDA parallel distribution */ 319566063dSJacob Faibussowitsch PetscCall(PetscOptionsBoundedInt("-da_processors_x", "Number of processors in x direction", "DMDASetNumProcs", dd->m, &dd->m, NULL, PETSC_DECIDE)); 329566063dSJacob Faibussowitsch if (dim > 1) PetscCall(PetscOptionsBoundedInt("-da_processors_y", "Number of processors in y direction", "DMDASetNumProcs", dd->n, &dd->n, NULL, PETSC_DECIDE)); 339566063dSJacob Faibussowitsch if (dim > 2) PetscCall(PetscOptionsBoundedInt("-da_processors_z", "Number of processors in z direction", "DMDASetNumProcs", dd->p, &dd->p, NULL, PETSC_DECIDE)); 34fe58071bSMatthew G. Knepley // Handle boundaries 35fe58071bSMatthew G. Knepley PetscCall(PetscOptionsEnum("-da_bd_x", "Boundary type for x direction", "DMDASetBoundaryType", DMBoundaryTypes, (PetscEnum)dd->bx, (PetscEnum *)&dd->bx, NULL)); 36fe58071bSMatthew G. Knepley if (dim > 1) PetscCall(PetscOptionsEnum("-da_bd_y", "Boundary type for y direction", "DMDASetBoundaryType", DMBoundaryTypes, (PetscEnum)dd->by, (PetscEnum *)&dd->by, NULL)); 37fe58071bSMatthew G. Knepley if (dim > 2) PetscCall(PetscOptionsEnum("-da_bd_z", "Boundary type for z direction", "DMDASetBoundaryType", DMBoundaryTypes, (PetscEnum)dd->bz, (PetscEnum *)&dd->bz, NULL)); 38fe58071bSMatthew G. Knepley PetscCall(PetscOptionsEnum("-da_bd_all", "Boundary type for every direction", "DMDASetBoundaryType", DMBoundaryTypes, (PetscEnum)bt, (PetscEnum *)&bt, &flg)); 39fe58071bSMatthew G. Knepley if (flg) PetscCall(DMDASetBoundaryType(da, bt, bt, bt)); 40aa219208SBarry Smith /* Handle DMDA refinement */ 419566063dSJacob Faibussowitsch PetscCall(PetscOptionsBoundedInt("-da_refine_x", "Refinement ratio in x direction", "DMDASetRefinementFactor", dd->refine_x, &dd->refine_x, NULL, 1)); 429566063dSJacob Faibussowitsch if (dim > 1) PetscCall(PetscOptionsBoundedInt("-da_refine_y", "Refinement ratio in y direction", "DMDASetRefinementFactor", dd->refine_y, &dd->refine_y, NULL, 1)); 439566063dSJacob Faibussowitsch if (dim > 2) PetscCall(PetscOptionsBoundedInt("-da_refine_z", "Refinement ratio in z direction", "DMDASetRefinementFactor", dd->refine_z, &dd->refine_z, NULL, 1)); 449371c9d4SSatish Balay dd->coarsen_x = dd->refine_x; 459371c9d4SSatish Balay dd->coarsen_y = dd->refine_y; 469371c9d4SSatish Balay dd->coarsen_z = dd->refine_z; 4747c6ae99SBarry Smith 48397b6216SJed Brown /* Get refinement factors, defaults taken from the coarse DMDA */ 499566063dSJacob Faibussowitsch PetscCall(DMDAGetRefinementFactor(da, &refx[0], &refy[0], &refz[0])); 50397b6216SJed Brown for (i = 1; i < maxnlevels; i++) { 51397b6216SJed Brown refx[i] = refx[0]; 52397b6216SJed Brown refy[i] = refy[0]; 53397b6216SJed Brown refz[i] = refz[0]; 54397b6216SJed Brown } 55397b6216SJed Brown n = maxnlevels; 569566063dSJacob Faibussowitsch PetscCall(PetscOptionsIntArray("-da_refine_hierarchy_x", "Refinement factor for each level", "None", refx, &n, &flg)); 57897f7067SBarry Smith if (flg) { 58897f7067SBarry Smith dd->refine_x = refx[0]; 59897f7067SBarry Smith dd->refine_x_hier_n = n; 609566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(n, &dd->refine_x_hier)); 619566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(dd->refine_x_hier, refx, n)); 62897f7067SBarry Smith } 63c73cfb54SMatthew G. Knepley if (dim > 1) { 64397b6216SJed Brown n = maxnlevels; 659566063dSJacob Faibussowitsch PetscCall(PetscOptionsIntArray("-da_refine_hierarchy_y", "Refinement factor for each level", "None", refy, &n, &flg)); 66897f7067SBarry Smith if (flg) { 67897f7067SBarry Smith dd->refine_y = refy[0]; 68897f7067SBarry Smith dd->refine_y_hier_n = n; 699566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(n, &dd->refine_y_hier)); 709566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(dd->refine_y_hier, refy, n)); 71897f7067SBarry Smith } 72397b6216SJed Brown } 73c73cfb54SMatthew G. Knepley if (dim > 2) { 74397b6216SJed Brown n = maxnlevels; 759566063dSJacob Faibussowitsch PetscCall(PetscOptionsIntArray("-da_refine_hierarchy_z", "Refinement factor for each level", "None", refz, &n, &flg)); 76897f7067SBarry Smith if (flg) { 77897f7067SBarry Smith dd->refine_z = refz[0]; 78897f7067SBarry Smith dd->refine_z_hier_n = n; 799566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(n, &dd->refine_z_hier)); 809566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(dd->refine_z_hier, refz, n)); 81897f7067SBarry Smith } 82397b6216SJed Brown } 83397b6216SJed Brown 849566063dSJacob Faibussowitsch PetscCall(PetscOptionsBoundedInt("-da_refine", "Uniformly refine DA one or more times", "None", refine, &refine, NULL, 0)); 85d0609cedSBarry Smith PetscOptionsHeadEnd(); 86235683edSBarry Smith 87e0f5d30fSBarry Smith while (refine--) { 88bff4a2f0SMatthew G. Knepley if (dd->bx == DM_BOUNDARY_PERIODIC || dd->interptype == DMDA_Q0) { 897a3b7fd5SBarry Smith PetscCall(PetscIntMultError(dd->refine_x, dd->M, &dd->M)); 90e0f5d30fSBarry Smith } else { 917a3b7fd5SBarry Smith PetscCall(PetscIntMultError(dd->refine_x, dd->M - 1, &dd->M)); 927a3b7fd5SBarry Smith dd->M += 1; 93e0f5d30fSBarry Smith } 94*42e65cf2SBarry Smith if (dim > 1 && (dd->by == DM_BOUNDARY_PERIODIC || dd->interptype == DMDA_Q0)) { 957a3b7fd5SBarry Smith PetscCall(PetscIntMultError(dd->refine_y, dd->N, &dd->N)); 96*42e65cf2SBarry Smith } else if (dim > 1) { 977a3b7fd5SBarry Smith PetscCall(PetscIntMultError(dd->refine_y, dd->N - 1, &dd->N)); 987a3b7fd5SBarry Smith dd->N += 1; 99e0f5d30fSBarry Smith } 100*42e65cf2SBarry Smith if (dim > 2 && (dd->bz == DM_BOUNDARY_PERIODIC || dd->interptype == DMDA_Q0)) { 1017a3b7fd5SBarry Smith PetscCall(PetscIntMultError(dd->refine_z, dd->P, &dd->P)); 102*42e65cf2SBarry Smith } else if (dim > 2) { 1037a3b7fd5SBarry Smith PetscCall(PetscIntMultError(dd->refine_z, dd->P - 1, &dd->P)); 1047a3b7fd5SBarry Smith dd->P += 1; 105e0f5d30fSBarry Smith } 106e0f5d30fSBarry Smith da->levelup++; 10785fc4b34SJed Brown if (da->levelup - da->leveldown >= 0) { 10885fc4b34SJed Brown dd->refine_x = refx[da->levelup - da->leveldown]; 10985fc4b34SJed Brown dd->refine_y = refy[da->levelup - da->leveldown]; 11085fc4b34SJed Brown dd->refine_z = refz[da->levelup - da->leveldown]; 11185fc4b34SJed Brown } 11285fc4b34SJed Brown if (da->levelup - da->leveldown >= 1) { 11385fc4b34SJed Brown dd->coarsen_x = refx[da->levelup - da->leveldown - 1]; 11485fc4b34SJed Brown dd->coarsen_y = refy[da->levelup - da->leveldown - 1]; 11585fc4b34SJed Brown dd->coarsen_z = refz[da->levelup - da->leveldown - 1]; 11685fc4b34SJed Brown } 117e0f5d30fSBarry Smith } 1183ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 11947c6ae99SBarry Smith } 12047c6ae99SBarry Smith 121ba38deedSJacob Faibussowitsch static PetscErrorCode DMLoad_DA(DM da, PetscViewer viewer) 122d71ae5a4SJacob Faibussowitsch { 123060da220SMatthew G. Knepley PetscInt dim, m, n, p, dof, swidth; 124b859378eSBarry Smith DMDAStencilType stencil; 125bff4a2f0SMatthew G. Knepley DMBoundaryType bx, by, bz; 126bc2bf880SBarry Smith PetscBool coors; 127bc2bf880SBarry Smith DM dac; 128bc2bf880SBarry Smith Vec c; 129b859378eSBarry Smith 130b859378eSBarry Smith PetscFunctionBegin; 1319566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryRead(viewer, &dim, 1, NULL, PETSC_INT)); 1329566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryRead(viewer, &m, 1, NULL, PETSC_INT)); 1339566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryRead(viewer, &n, 1, NULL, PETSC_INT)); 1349566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryRead(viewer, &p, 1, NULL, PETSC_INT)); 1359566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryRead(viewer, &dof, 1, NULL, PETSC_INT)); 1369566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryRead(viewer, &swidth, 1, NULL, PETSC_INT)); 1379566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryRead(viewer, &bx, 1, NULL, PETSC_ENUM)); 1389566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryRead(viewer, &by, 1, NULL, PETSC_ENUM)); 1399566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryRead(viewer, &bz, 1, NULL, PETSC_ENUM)); 1409566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryRead(viewer, &stencil, 1, NULL, PETSC_ENUM)); 141b859378eSBarry Smith 1429566063dSJacob Faibussowitsch PetscCall(DMSetDimension(da, dim)); 1439566063dSJacob Faibussowitsch PetscCall(DMDASetSizes(da, m, n, p)); 1449566063dSJacob Faibussowitsch PetscCall(DMDASetBoundaryType(da, bx, by, bz)); 1459566063dSJacob Faibussowitsch PetscCall(DMDASetDof(da, dof)); 1469566063dSJacob Faibussowitsch PetscCall(DMDASetStencilType(da, stencil)); 1479566063dSJacob Faibussowitsch PetscCall(DMDASetStencilWidth(da, swidth)); 1489566063dSJacob Faibussowitsch PetscCall(DMSetUp(da)); 1499566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryRead(viewer, &coors, 1, NULL, PETSC_ENUM)); 150bc2bf880SBarry Smith if (coors) { 1519566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDM(da, &dac)); 1529566063dSJacob Faibussowitsch PetscCall(DMCreateGlobalVector(dac, &c)); 1539566063dSJacob Faibussowitsch PetscCall(VecLoad(c, viewer)); 1549566063dSJacob Faibussowitsch PetscCall(DMSetCoordinates(da, c)); 1559566063dSJacob Faibussowitsch PetscCall(VecDestroy(&c)); 156bc2bf880SBarry Smith } 1573ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 158b859378eSBarry Smith } 159b859378eSBarry Smith 160ba38deedSJacob Faibussowitsch static PetscErrorCode DMCreateSubDM_DA(DM dm, PetscInt numFields, const PetscInt fields[], IS *is, DM *subdm) 161d71ae5a4SJacob Faibussowitsch { 162d724dfffSBarry Smith DM_DA *da = (DM_DA *)dm->data; 163d724dfffSBarry Smith 164d724dfffSBarry Smith PetscFunctionBegin; 165d724dfffSBarry Smith if (subdm) { 166c38c1269SMatthew G. Knepley PetscSF sf; 167c38c1269SMatthew G. Knepley Vec coords; 168c38c1269SMatthew G. Knepley void *ctx; 169c38c1269SMatthew G. Knepley /* Cannot use DMClone since the dof stuff is mixed in. Ugh 1709566063dSJacob Faibussowitsch PetscCall(DMClone(dm, subdm)); */ 1719566063dSJacob Faibussowitsch PetscCall(DMCreate(PetscObjectComm((PetscObject)dm), subdm)); 1729566063dSJacob Faibussowitsch PetscCall(DMGetPointSF(dm, &sf)); 1739566063dSJacob Faibussowitsch PetscCall(DMSetPointSF(*subdm, sf)); 1749566063dSJacob Faibussowitsch PetscCall(DMGetApplicationContext(dm, &ctx)); 1759566063dSJacob Faibussowitsch PetscCall(DMSetApplicationContext(*subdm, ctx)); 1769566063dSJacob Faibussowitsch PetscCall(DMGetCoordinatesLocal(dm, &coords)); 177c38c1269SMatthew G. Knepley if (coords) { 1789566063dSJacob Faibussowitsch PetscCall(DMSetCoordinatesLocal(*subdm, coords)); 179c38c1269SMatthew G. Knepley } else { 1809566063dSJacob Faibussowitsch PetscCall(DMGetCoordinates(dm, &coords)); 1819566063dSJacob Faibussowitsch if (coords) PetscCall(DMSetCoordinates(*subdm, coords)); 182c38c1269SMatthew G. Knepley } 183c38c1269SMatthew G. Knepley 1849566063dSJacob Faibussowitsch PetscCall(DMSetType(*subdm, DMDA)); 1859566063dSJacob Faibussowitsch PetscCall(DMSetDimension(*subdm, dm->dim)); 1869566063dSJacob Faibussowitsch PetscCall(DMDASetSizes(*subdm, da->M, da->N, da->P)); 1879566063dSJacob Faibussowitsch PetscCall(DMDASetNumProcs(*subdm, da->m, da->n, da->p)); 1889566063dSJacob Faibussowitsch PetscCall(DMDASetBoundaryType(*subdm, da->bx, da->by, da->bz)); 1899566063dSJacob Faibussowitsch PetscCall(DMDASetDof(*subdm, numFields)); 1909566063dSJacob Faibussowitsch PetscCall(DMDASetStencilType(*subdm, da->stencil_type)); 1919566063dSJacob Faibussowitsch PetscCall(DMDASetStencilWidth(*subdm, da->s)); 1929566063dSJacob Faibussowitsch PetscCall(DMDASetOwnershipRanges(*subdm, da->lx, da->ly, da->lz)); 193d724dfffSBarry Smith } 194d724dfffSBarry Smith if (is) { 195d724dfffSBarry Smith PetscInt *indices, cnt = 0, dof = da->w, i, j; 19638221697SMatthew G. Knepley 1979566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(da->Nlocal * numFields / dof, &indices)); 19838221697SMatthew G. Knepley for (i = da->base / dof; i < (da->base + da->Nlocal) / dof; ++i) { 199ad540459SPierre Jolivet for (j = 0; j < numFields; ++j) indices[cnt++] = dof * i + fields[j]; 200d724dfffSBarry Smith } 20163a3b9bcSJacob Faibussowitsch PetscCheck(cnt == da->Nlocal * numFields / dof, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Count %" PetscInt_FMT " does not equal expected value %" PetscInt_FMT, cnt, da->Nlocal * numFields / dof); 2029566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)dm), cnt, indices, PETSC_OWN_POINTER, is)); 203d724dfffSBarry Smith } 2043ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 205d724dfffSBarry Smith } 206d724dfffSBarry Smith 207ba38deedSJacob Faibussowitsch static PetscErrorCode DMCreateFieldDecomposition_DA(DM dm, PetscInt *len, char ***namelist, IS **islist, DM **dmlist) 208d71ae5a4SJacob Faibussowitsch { 2091c3fb106SBarry Smith PetscInt i; 2101c3fb106SBarry Smith DM_DA *dd = (DM_DA *)dm->data; 2111c3fb106SBarry Smith PetscInt dof = dd->w; 2121c3fb106SBarry Smith 2131c3fb106SBarry Smith PetscFunctionBegin; 214731c8d9eSDmitry Karpeev if (len) *len = dof; 2151c3fb106SBarry Smith if (islist) { 2161c3fb106SBarry Smith Vec v; 2171c3fb106SBarry Smith PetscInt rstart, n; 2181c3fb106SBarry Smith 2199566063dSJacob Faibussowitsch PetscCall(DMGetGlobalVector(dm, &v)); 2209566063dSJacob Faibussowitsch PetscCall(VecGetOwnershipRange(v, &rstart, NULL)); 2219566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(v, &n)); 2229566063dSJacob Faibussowitsch PetscCall(DMRestoreGlobalVector(dm, &v)); 2239566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(dof, islist)); 22448a46eb9SPierre Jolivet for (i = 0; i < dof; i++) PetscCall(ISCreateStride(PetscObjectComm((PetscObject)dm), n / dof, rstart + i, dof, &(*islist)[i])); 2251c3fb106SBarry Smith } 2261c3fb106SBarry Smith if (namelist) { 2279566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(dof, namelist)); 2281c3fb106SBarry Smith if (dd->fieldname) { 22948a46eb9SPierre Jolivet for (i = 0; i < dof; i++) PetscCall(PetscStrallocpy(dd->fieldname[i], &(*namelist)[i])); 2301c3fb106SBarry Smith } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_SUP, "Currently DMDA must have fieldnames"); 2311c3fb106SBarry Smith } 2321c3fb106SBarry Smith if (dmlist) { 2331c3fb106SBarry Smith DM da; 2341c3fb106SBarry Smith 2359566063dSJacob Faibussowitsch PetscCall(DMDACreate(PetscObjectComm((PetscObject)dm), &da)); 2369566063dSJacob Faibussowitsch PetscCall(DMSetDimension(da, dm->dim)); 2379566063dSJacob Faibussowitsch PetscCall(DMDASetSizes(da, dd->M, dd->N, dd->P)); 2389566063dSJacob Faibussowitsch PetscCall(DMDASetNumProcs(da, dd->m, dd->n, dd->p)); 2399566063dSJacob Faibussowitsch PetscCall(DMDASetBoundaryType(da, dd->bx, dd->by, dd->bz)); 2409566063dSJacob Faibussowitsch PetscCall(DMDASetDof(da, 1)); 2419566063dSJacob Faibussowitsch PetscCall(DMDASetStencilType(da, dd->stencil_type)); 2429566063dSJacob Faibussowitsch PetscCall(DMDASetStencilWidth(da, dd->s)); 2439566063dSJacob Faibussowitsch PetscCall(DMSetUp(da)); 2449566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(dof, dmlist)); 2459566063dSJacob Faibussowitsch for (i = 0; i < dof - 1; i++) PetscCall(PetscObjectReference((PetscObject)da)); 2461c3fb106SBarry Smith for (i = 0; i < dof; i++) (*dmlist)[i] = da; 2471c3fb106SBarry Smith } 2483ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2491c3fb106SBarry Smith } 2501c3fb106SBarry Smith 251ba38deedSJacob Faibussowitsch static PetscErrorCode DMClone_DA(DM dm, DM *newdm) 252d71ae5a4SJacob Faibussowitsch { 25338221697SMatthew G. Knepley DM_DA *da = (DM_DA *)dm->data; 25438221697SMatthew G. Knepley 25538221697SMatthew G. Knepley PetscFunctionBegin; 2569566063dSJacob Faibussowitsch PetscCall(DMSetType(*newdm, DMDA)); 2579566063dSJacob Faibussowitsch PetscCall(DMSetDimension(*newdm, dm->dim)); 2589566063dSJacob Faibussowitsch PetscCall(DMDASetSizes(*newdm, da->M, da->N, da->P)); 2599566063dSJacob Faibussowitsch PetscCall(DMDASetNumProcs(*newdm, da->m, da->n, da->p)); 2609566063dSJacob Faibussowitsch PetscCall(DMDASetBoundaryType(*newdm, da->bx, da->by, da->bz)); 2619566063dSJacob Faibussowitsch PetscCall(DMDASetDof(*newdm, da->w)); 2629566063dSJacob Faibussowitsch PetscCall(DMDASetStencilType(*newdm, da->stencil_type)); 2639566063dSJacob Faibussowitsch PetscCall(DMDASetStencilWidth(*newdm, da->s)); 2649566063dSJacob Faibussowitsch PetscCall(DMDASetOwnershipRanges(*newdm, da->lx, da->ly, da->lz)); 2659566063dSJacob Faibussowitsch PetscCall(DMSetUp(*newdm)); 2663ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 26738221697SMatthew G. Knepley } 26838221697SMatthew G. Knepley 269d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMHasCreateInjection_DA(DM dm, PetscBool *flg) 270d71ae5a4SJacob Faibussowitsch { 2714a7a4c06SLawrence Mitchell DM_DA *da = (DM_DA *)dm->data; 2724a7a4c06SLawrence Mitchell 2734a7a4c06SLawrence Mitchell PetscFunctionBegin; 2744a7a4c06SLawrence Mitchell PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 2754f572ea9SToby Isaac PetscAssertPointer(flg, 2); 276131f56ebSLawrence Mitchell *flg = da->interptype == DMDA_Q1 ? PETSC_TRUE : PETSC_FALSE; 2773ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2784a7a4c06SLawrence Mitchell } 2794a7a4c06SLawrence Mitchell 280d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMGetDimPoints_DA(DM dm, PetscInt dim, PetscInt *pStart, PetscInt *pEnd) 281d71ae5a4SJacob Faibussowitsch { 282793f3fe5SMatthew G. Knepley PetscFunctionBegin; 2839566063dSJacob Faibussowitsch PetscCall(DMDAGetDepthStratum(dm, dim, pStart, pEnd)); 2843ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 285793f3fe5SMatthew G. Knepley } 286793f3fe5SMatthew G. Knepley 287d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMGetNeighbors_DA(DM dm, PetscInt *nranks, const PetscMPIInt *ranks[]) 288d71ae5a4SJacob Faibussowitsch { 289502a2867SDave May PetscInt dim; 290502a2867SDave May DMDAStencilType st; 291502a2867SDave May 292502a2867SDave May PetscFunctionBegin; 2939566063dSJacob Faibussowitsch PetscCall(DMDAGetNeighbors(dm, ranks)); 2949566063dSJacob Faibussowitsch PetscCall(DMDAGetInfo(dm, &dim, NULL, NULL, NULL, NULL, NULL, NULL, NULL, NULL, NULL, NULL, NULL, &st)); 295502a2867SDave May 296502a2867SDave May switch (dim) { 297502a2867SDave May case 1: 298502a2867SDave May *nranks = 3; 299ad540459SPierre Jolivet /* if (st == DMDA_STENCIL_STAR) *nranks = 3; */ 300502a2867SDave May break; 301502a2867SDave May case 2: 302502a2867SDave May *nranks = 9; 303ad540459SPierre Jolivet /* if (st == DMDA_STENCIL_STAR) *nranks = 5; */ 304502a2867SDave May break; 305502a2867SDave May case 3: 306502a2867SDave May *nranks = 27; 307ad540459SPierre Jolivet /* if (st == DMDA_STENCIL_STAR) *nranks = 7; */ 308502a2867SDave May break; 309d71ae5a4SJacob Faibussowitsch default: 310d71ae5a4SJacob Faibussowitsch break; 311502a2867SDave May } 3123ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 313502a2867SDave May } 314502a2867SDave May 3153efe6655SBarry Smith /*MC 316dce8aebaSBarry Smith DMDA = "da" - A `DM` object that is used to manage data for a structured grid in 1, 2, or 3 dimensions. 3173efe6655SBarry Smith In the global representation of the vector each process stores a non-overlapping rectangular (or slab in 3d) portion of the grid points. 31812b4a537SBarry Smith In the local representation these rectangular regions (slabs) are extended in all directions by a stencil width set with `DMDASetStencilWidth()`. 3193efe6655SBarry Smith 3203efe6655SBarry Smith The vectors can be thought of as either cell centered or vertex centered on the mesh. But some variables cannot be cell centered and others 32112b4a537SBarry Smith vertex centered; see the documentation for `DMSTAG`, a similar `DM` implementation which supports more general staggered grids. 3223efe6655SBarry Smith 3233efe6655SBarry Smith Level: intermediate 3243efe6655SBarry Smith 32512b4a537SBarry Smith .seealso: [](sec_struct), `DMType`, `DMCOMPOSITE`, `DMSTAG`, `DMDACreate()`, `DMCreate()`, `DMSetType()`, `DMDASetStencilWidth()`, `DMDASetStencilType()`, 32612b4a537SBarry Smith `DMDAStencilType` 3273efe6655SBarry Smith M*/ 3283efe6655SBarry Smith 329d71ae5a4SJacob Faibussowitsch PETSC_EXTERN PetscErrorCode DMCreate_DA(DM da) 330d71ae5a4SJacob Faibussowitsch { 33147c6ae99SBarry Smith DM_DA *dd; 33247c6ae99SBarry Smith 33347c6ae99SBarry Smith PetscFunctionBegin; 3344f572ea9SToby Isaac PetscAssertPointer(da, 1); 3354dfa11a4SJacob Faibussowitsch PetscCall(PetscNew(&dd)); 336a4121054SBarry Smith da->data = dd; 33747c6ae99SBarry Smith 338c73cfb54SMatthew G. Knepley da->dim = -1; 339aa219208SBarry Smith dd->interptype = DMDA_Q1; 34047c6ae99SBarry Smith dd->refine_x = 2; 34147c6ae99SBarry Smith dd->refine_y = 2; 34247c6ae99SBarry Smith dd->refine_z = 2; 34381c108dcSJed Brown dd->coarsen_x = 2; 34481c108dcSJed Brown dd->coarsen_y = 2; 34581c108dcSJed Brown dd->coarsen_z = 2; 3460298fd71SBarry Smith dd->fieldname = NULL; 34747c6ae99SBarry Smith dd->nlocal = -1; 34847c6ae99SBarry Smith dd->Nlocal = -1; 34947c6ae99SBarry Smith dd->M = -1; 35047c6ae99SBarry Smith dd->N = -1; 35147c6ae99SBarry Smith dd->P = -1; 35247c6ae99SBarry Smith dd->m = -1; 35347c6ae99SBarry Smith dd->n = -1; 35447c6ae99SBarry Smith dd->p = -1; 35547c6ae99SBarry Smith dd->w = -1; 35647c6ae99SBarry Smith dd->s = -1; 3578865f1eaSKarl Rupp 3589371c9d4SSatish Balay dd->xs = -1; 3599371c9d4SSatish Balay dd->xe = -1; 3609371c9d4SSatish Balay dd->ys = -1; 3619371c9d4SSatish Balay dd->ye = -1; 3629371c9d4SSatish Balay dd->zs = -1; 3639371c9d4SSatish Balay dd->ze = -1; 3649371c9d4SSatish Balay dd->Xs = -1; 3659371c9d4SSatish Balay dd->Xe = -1; 3669371c9d4SSatish Balay dd->Ys = -1; 3679371c9d4SSatish Balay dd->Ye = -1; 3689371c9d4SSatish Balay dd->Zs = -1; 3699371c9d4SSatish Balay dd->Ze = -1; 37047c6ae99SBarry Smith 3713e7870d2SPeter Brune dd->Nsub = 1; 3727ddda789SPeter Brune dd->xol = 0; 3737ddda789SPeter Brune dd->yol = 0; 3747ddda789SPeter Brune dd->zol = 0; 375d886c4f4SPeter Brune dd->xo = 0; 376d886c4f4SPeter Brune dd->yo = 0; 377d886c4f4SPeter Brune dd->zo = 0; 378e30e807fSPeter Brune dd->Mo = -1; 379e30e807fSPeter Brune dd->No = -1; 380e30e807fSPeter Brune dd->Po = -1; 38188661749SPeter Brune 3820298fd71SBarry Smith dd->gtol = NULL; 3830298fd71SBarry Smith dd->ltol = NULL; 3840298fd71SBarry Smith dd->ao = NULL; 3853ba16761SJacob Faibussowitsch PetscCall(PetscStrallocpy(AOBASIC, (char **)&dd->aotype)); 38647c6ae99SBarry Smith dd->base = -1; 387bff4a2f0SMatthew G. Knepley dd->bx = DM_BOUNDARY_NONE; 388bff4a2f0SMatthew G. Knepley dd->by = DM_BOUNDARY_NONE; 389bff4a2f0SMatthew G. Knepley dd->bz = DM_BOUNDARY_NONE; 390aa219208SBarry Smith dd->stencil_type = DMDA_STENCIL_BOX; 391aa219208SBarry Smith dd->interptype = DMDA_Q1; 3920298fd71SBarry Smith dd->lx = NULL; 3930298fd71SBarry Smith dd->ly = NULL; 3940298fd71SBarry Smith dd->lz = NULL; 39547c6ae99SBarry Smith 396454e267fSLisandro Dalcin dd->elementtype = DMDA_ELEMENT_Q1; 397454e267fSLisandro Dalcin 398a4121054SBarry Smith da->ops->globaltolocalbegin = DMGlobalToLocalBegin_DA; 399a4121054SBarry Smith da->ops->globaltolocalend = DMGlobalToLocalEnd_DA; 400a4121054SBarry Smith da->ops->localtoglobalbegin = DMLocalToGlobalBegin_DA; 401a4121054SBarry Smith da->ops->localtoglobalend = DMLocalToGlobalEnd_DA; 402d78e899eSRichard Tran Mills da->ops->localtolocalbegin = DMLocalToLocalBegin_DA; 403d78e899eSRichard Tran Mills da->ops->localtolocalend = DMLocalToLocalEnd_DA; 404a4121054SBarry Smith da->ops->createglobalvector = DMCreateGlobalVector_DA; 405a4121054SBarry Smith da->ops->createlocalvector = DMCreateLocalVector_DA; 40625296bd5SBarry Smith da->ops->createinterpolation = DMCreateInterpolation_DA; 407e727c939SJed Brown da->ops->getcoloring = DMCreateColoring_DA; 40825296bd5SBarry Smith da->ops->creatematrix = DMCreateMatrix_DA; 409a4121054SBarry Smith da->ops->refine = DMRefine_DA; 410a4121054SBarry Smith da->ops->coarsen = DMCoarsen_DA; 411a4121054SBarry Smith da->ops->refinehierarchy = DMRefineHierarchy_DA; 412a4121054SBarry Smith da->ops->coarsenhierarchy = DMCoarsenHierarchy_DA; 4135a84ad33SLisandro Dalcin da->ops->createinjection = DMCreateInjection_DA; 4144a7a4c06SLawrence Mitchell da->ops->hascreateinjection = DMHasCreateInjection_DA; 415a4121054SBarry Smith da->ops->destroy = DMDestroy_DA; 416ea78f98cSLisandro Dalcin da->ops->view = NULL; 417a4121054SBarry Smith da->ops->setfromoptions = DMSetFromOptions_DA; 418a4121054SBarry Smith da->ops->setup = DMSetUp_DA; 41938221697SMatthew G. Knepley da->ops->clone = DMClone_DA; 420b859378eSBarry Smith da->ops->load = DMLoad_DA; 4216636e97aSMatthew G Knepley da->ops->createcoordinatedm = DMCreateCoordinateDM_DA; 422d724dfffSBarry Smith da->ops->createsubdm = DMCreateSubDM_DA; 42316621825SDmitry Karpeev da->ops->createfielddecomposition = DMCreateFieldDecomposition_DA; 424e30e807fSPeter Brune da->ops->createdomaindecomposition = DMCreateDomainDecomposition_DA; 425e30e807fSPeter Brune da->ops->createddscatters = DMCreateDomainDecompositionScatters_DA; 426793f3fe5SMatthew G. Knepley da->ops->getdimpoints = DMGetDimPoints_DA; 427502a2867SDave May da->ops->getneighbors = DMGetNeighbors_DA; 4286c6a6b79SMatthew G. Knepley da->ops->getlocalboundingbox = DMGetLocalBoundingBox_DA; 42905264a50SDave May da->ops->locatepoints = DMLocatePoints_DA_Regular; 4307c3cd84eSPatrick Sanan da->ops->getcompatibility = DMGetCompatibility_DA; 4319566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)da, "DMSetUpGLVisViewer_C", DMSetUpGLVisViewer_DMDA)); 4323ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 433a4121054SBarry Smith } 43447c6ae99SBarry Smith 435a4121054SBarry Smith /*@ 43612b4a537SBarry Smith DMDACreate - Creates a `DMDA` object for managing structured grids. 437a4121054SBarry Smith 4385edebc4bSPatrick Sanan Collective 439a4121054SBarry Smith 440a4121054SBarry Smith Input Parameter: 44112b4a537SBarry Smith . comm - The communicator for the `DMDA` object 442a4121054SBarry Smith 443a4121054SBarry Smith Output Parameter: 44472fd0fbdSBarry Smith . da - the `DMDA` object 445a4121054SBarry Smith 446e0f5d30fSBarry Smith Level: advanced 447e0f5d30fSBarry Smith 44872fd0fbdSBarry Smith Notes: 44972fd0fbdSBarry Smith See [](sec_struct) for details on the construction of a `DMDA` 450a4121054SBarry Smith 45172fd0fbdSBarry Smith `DMDACreate1d()`, `DMDACreate2d()`, and `DMDACreate3d()` are convenience routines to quickly completely create a `DMDA` 45272fd0fbdSBarry Smith 45372fd0fbdSBarry Smith .seealso: [](sec_struct), `DM`, `DMDA`, `DMSetUp()`, `DMDASetSizes()`, `DMClone()`, `DMDACreate1d()`, `DMDACreate2d()`, `DMDACreate3d()` 454a4121054SBarry Smith @*/ 455d71ae5a4SJacob Faibussowitsch PetscErrorCode DMDACreate(MPI_Comm comm, DM *da) 456d71ae5a4SJacob Faibussowitsch { 457a4121054SBarry Smith PetscFunctionBegin; 4584f572ea9SToby Isaac PetscAssertPointer(da, 2); 4599566063dSJacob Faibussowitsch PetscCall(DMCreate(comm, da)); 4609566063dSJacob Faibussowitsch PetscCall(DMSetType(*da, DMDA)); 4613ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 46247c6ae99SBarry Smith } 463