147c6ae99SBarry Smith 2af0996ceSBarry Smith #include <petsc/private/dmdaimpl.h> /*I "petscdmda.h" I*/ 347c6ae99SBarry Smith 447c6ae99SBarry Smith #undef __FUNCT__ 5aa219208SBarry Smith #define __FUNCT__ "DMDAVecGetArray" 647c6ae99SBarry Smith /*@C 7aa219208SBarry Smith DMDAVecGetArray - Returns a multiple dimension array that shares data with 847c6ae99SBarry Smith the underlying vector and is indexed using the global dimensions. 947c6ae99SBarry Smith 10*2ddbf755SMatthew G. Knepley Logically collective on Vec 1147c6ae99SBarry Smith 1247c6ae99SBarry Smith Input Parameter: 1347c6ae99SBarry Smith + da - the distributed array 147e57d48aSBarry Smith - vec - the vector, either a vector the same size as one obtained with DMCreateGlobalVector() or DMCreateLocalVector() 1547c6ae99SBarry Smith 1647c6ae99SBarry Smith Output Parameter: 1747c6ae99SBarry Smith . array - the array 1847c6ae99SBarry Smith 1947c6ae99SBarry Smith Notes: 20aa219208SBarry Smith Call DMDAVecRestoreArray() once you have finished accessing the vector entries. 2147c6ae99SBarry Smith 2247c6ae99SBarry Smith In C, the indexing is "backwards" from what expects: array[k][j][i] NOT array[i][j][k]! 2347c6ae99SBarry Smith 247e57d48aSBarry Smith If vec is a local vector (obtained with DMCreateLocalVector() etc) then the ghost point locations are accessible. If it is 257e57d48aSBarry Smith a global vector then the ghost points are not accessible. Of course with the local vector you will have had to do the 2647c6ae99SBarry Smith 277e57d48aSBarry Smith appropriate DMGlobalToLocalBegin() and DMGlobalToLocalEnd() to have correct values in the ghost locations. 2847c6ae99SBarry Smith 29aa219208SBarry Smith Fortran Notes: From Fortran use DMDAVecGetArrayF90() and pass for the array type PetscScalar,pointer :: array(:,...,:) of the appropriate 30aa219208SBarry Smith dimension. For a DMDA created with a dof of 1 use the dimension of the DMDA, for a DMDA created with a dof greater than 1 use one more than the 31aa219208SBarry Smith dimension of the DMDA. The order of the indices is array(xs:xs+xm-1,ys:ys+ym-1,zs:zs+zm-1) (when dof is 1) otherwise 32bef27881SBarry Smith array(0:dof-1,xs:xs+xm-1,ys:ys+ym-1,zs:zs+zm-1) where the values are obtained from 33af0996ceSBarry Smith DMDAGetCorners() for a global array or DMDAGetGhostCorners() for a local array. Include petsc/finclude/petscdmda.h90 to access this routine. 3447c6ae99SBarry Smith 35596f5af7SJed Brown Due to bugs in the compiler DMDAVecGetArrayF90() does not work with gfortran versions before 4.5 3647c6ae99SBarry Smith 3747c6ae99SBarry Smith Level: intermediate 3847c6ae99SBarry Smith 3947c6ae99SBarry Smith .keywords: distributed array, get, corners, nodes, local indices, coordinates 4047c6ae99SBarry Smith 41aa219208SBarry Smith .seealso: DMDAGetGhostCorners(), DMDAGetCorners(), VecGetArray(), VecRestoreArray(), DMDAVecRestoreArray(), DMDAVecRestoreArrayDOF() 426db82c94SMatthew G Knepley DMDAVecGetArrayDOF() 4347c6ae99SBarry Smith @*/ 447087cfbeSBarry Smith PetscErrorCode DMDAVecGetArray(DM da,Vec vec,void *array) 4547c6ae99SBarry Smith { 4647c6ae99SBarry Smith PetscErrorCode ierr; 4747c6ae99SBarry Smith PetscInt xs,ys,zs,xm,ym,zm,gxs,gys,gzs,gxm,gym,gzm,N,dim,dof; 4847c6ae99SBarry Smith 4947c6ae99SBarry Smith PetscFunctionBegin; 506db82c94SMatthew G Knepley PetscValidHeaderSpecific(da, DM_CLASSID, 1); 516db82c94SMatthew G Knepley PetscValidHeaderSpecific(vec, VEC_CLASSID, 2); 526db82c94SMatthew G Knepley PetscValidPointer(array, 3); 53aa1993deSMatthew G Knepley if (da->defaultSection) { 54aa1993deSMatthew G Knepley ierr = VecGetArray(vec,(PetscScalar**)array);CHKERRQ(ierr); 55aa1993deSMatthew G Knepley PetscFunctionReturn(0); 56aa1993deSMatthew G Knepley } 57aa219208SBarry Smith ierr = DMDAGetCorners(da,&xs,&ys,&zs,&xm,&ym,&zm);CHKERRQ(ierr); 58aa219208SBarry Smith ierr = DMDAGetGhostCorners(da,&gxs,&gys,&gzs,&gxm,&gym,&gzm);CHKERRQ(ierr); 591321219cSEthan Coon ierr = DMDAGetInfo(da,&dim,0,0,0,0,0,0,&dof,0,0,0,0,0);CHKERRQ(ierr); 6047c6ae99SBarry Smith 6147c6ae99SBarry Smith /* Handle case where user passes in global vector as opposed to local */ 6247c6ae99SBarry Smith ierr = VecGetLocalSize(vec,&N);CHKERRQ(ierr); 6347c6ae99SBarry Smith if (N == xm*ym*zm*dof) { 6447c6ae99SBarry Smith gxm = xm; 6547c6ae99SBarry Smith gym = ym; 6647c6ae99SBarry Smith gzm = zm; 6747c6ae99SBarry Smith gxs = xs; 6847c6ae99SBarry Smith gys = ys; 6947c6ae99SBarry Smith gzs = zs; 7030729d88SBarry Smith } else if (N != gxm*gym*gzm*dof) SETERRQ3(PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"Vector local size %D is not compatible with DMDA local sizes %D %D\n",N,xm*ym*zm*dof,gxm*gym*gzm*dof); 7147c6ae99SBarry Smith 7247c6ae99SBarry Smith if (dim == 1) { 7347c6ae99SBarry Smith ierr = VecGetArray1d(vec,gxm*dof,gxs*dof,(PetscScalar**)array);CHKERRQ(ierr); 7447c6ae99SBarry Smith } else if (dim == 2) { 7547c6ae99SBarry Smith ierr = VecGetArray2d(vec,gym,gxm*dof,gys,gxs*dof,(PetscScalar***)array);CHKERRQ(ierr); 7647c6ae99SBarry Smith } else if (dim == 3) { 7747c6ae99SBarry Smith ierr = VecGetArray3d(vec,gzm,gym,gxm*dof,gzs,gys,gxs*dof,(PetscScalar****)array);CHKERRQ(ierr); 7830729d88SBarry Smith } else SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_CORRUPT,"DMDA dimension not 1, 2, or 3, it is %D\n",dim); 7947c6ae99SBarry Smith PetscFunctionReturn(0); 8047c6ae99SBarry Smith } 8147c6ae99SBarry Smith 8247c6ae99SBarry Smith #undef __FUNCT__ 83aa219208SBarry Smith #define __FUNCT__ "DMDAVecRestoreArray" 8447c6ae99SBarry Smith /*@ 85aa219208SBarry Smith DMDAVecRestoreArray - Restores a multiple dimension array obtained with DMDAVecGetArray() 8647c6ae99SBarry Smith 87*2ddbf755SMatthew G. Knepley Logically collective on Vec 8847c6ae99SBarry Smith 8947c6ae99SBarry Smith Input Parameter: 9047c6ae99SBarry Smith + da - the distributed array 9147c6ae99SBarry Smith . vec - the vector, either a vector the same size as one obtained with 92564755cdSBarry Smith DMCreateGlobalVector() or DMCreateLocalVector() 93e5c84f05SJed Brown - array - the array, non-NULL pointer is zeroed 9447c6ae99SBarry Smith 9547c6ae99SBarry Smith Level: intermediate 9647c6ae99SBarry Smith 97aa219208SBarry Smith Fortran Notes: From Fortran use DMDAVecRestoreArrayF90() 9847c6ae99SBarry Smith 9947c6ae99SBarry Smith .keywords: distributed array, get, corners, nodes, local indices, coordinates 10047c6ae99SBarry Smith 101aa219208SBarry Smith .seealso: DMDAGetGhostCorners(), DMDAGetCorners(), VecGetArray(), VecRestoreArray(), DMDAVecGetArray() 10247c6ae99SBarry Smith @*/ 1037087cfbeSBarry Smith PetscErrorCode DMDAVecRestoreArray(DM da,Vec vec,void *array) 10447c6ae99SBarry Smith { 10547c6ae99SBarry Smith PetscErrorCode ierr; 10647c6ae99SBarry Smith PetscInt xs,ys,zs,xm,ym,zm,gxs,gys,gzs,gxm,gym,gzm,N,dim,dof; 10747c6ae99SBarry Smith 10847c6ae99SBarry Smith PetscFunctionBegin; 1096db82c94SMatthew G Knepley PetscValidHeaderSpecific(da, DM_CLASSID, 1); 1106db82c94SMatthew G Knepley PetscValidHeaderSpecific(vec, VEC_CLASSID, 2); 1116db82c94SMatthew G Knepley PetscValidPointer(array, 3); 112aa1993deSMatthew G Knepley if (da->defaultSection) { 113aa1993deSMatthew G Knepley ierr = VecRestoreArray(vec,(PetscScalar**)array);CHKERRQ(ierr); 114aa1993deSMatthew G Knepley PetscFunctionReturn(0); 115aa1993deSMatthew G Knepley } 116aa219208SBarry Smith ierr = DMDAGetCorners(da,&xs,&ys,&zs,&xm,&ym,&zm);CHKERRQ(ierr); 117aa219208SBarry Smith ierr = DMDAGetGhostCorners(da,&gxs,&gys,&gzs,&gxm,&gym,&gzm);CHKERRQ(ierr); 1181321219cSEthan Coon ierr = DMDAGetInfo(da,&dim,0,0,0,0,0,0,&dof,0,0,0,0,0);CHKERRQ(ierr); 11947c6ae99SBarry Smith 12047c6ae99SBarry Smith /* Handle case where user passes in global vector as opposed to local */ 12147c6ae99SBarry Smith ierr = VecGetLocalSize(vec,&N);CHKERRQ(ierr); 12247c6ae99SBarry Smith if (N == xm*ym*zm*dof) { 12347c6ae99SBarry Smith gxm = xm; 12447c6ae99SBarry Smith gym = ym; 12547c6ae99SBarry Smith gzm = zm; 12647c6ae99SBarry Smith gxs = xs; 12747c6ae99SBarry Smith gys = ys; 12847c6ae99SBarry Smith gzs = zs; 12930729d88SBarry Smith } else if (N != gxm*gym*gzm*dof) SETERRQ3(PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"Vector local size %D is not compatible with DMDA local sizes %D %D\n",N,xm*ym*zm*dof,gxm*gym*gzm*dof); 13047c6ae99SBarry Smith 13147c6ae99SBarry Smith if (dim == 1) { 13247c6ae99SBarry Smith ierr = VecRestoreArray1d(vec,gxm*dof,gxs*dof,(PetscScalar**)array);CHKERRQ(ierr); 13347c6ae99SBarry Smith } else if (dim == 2) { 13447c6ae99SBarry Smith ierr = VecRestoreArray2d(vec,gym,gxm*dof,gys,gxs*dof,(PetscScalar***)array);CHKERRQ(ierr); 13547c6ae99SBarry Smith } else if (dim == 3) { 13647c6ae99SBarry Smith ierr = VecRestoreArray3d(vec,gzm,gym,gxm*dof,gzs,gys,gxs*dof,(PetscScalar****)array);CHKERRQ(ierr); 13730729d88SBarry Smith } else SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_CORRUPT,"DMDA dimension not 1, 2, or 3, it is %D\n",dim); 13847c6ae99SBarry Smith PetscFunctionReturn(0); 13947c6ae99SBarry Smith } 14047c6ae99SBarry Smith 14147c6ae99SBarry Smith #undef __FUNCT__ 142aa219208SBarry Smith #define __FUNCT__ "DMDAVecGetArrayDOF" 14347c6ae99SBarry Smith /*@C 144aa219208SBarry Smith DMDAVecGetArrayDOF - Returns a multiple dimension array that shares data with 14547c6ae99SBarry Smith the underlying vector and is indexed using the global dimensions. 14647c6ae99SBarry Smith 147*2ddbf755SMatthew G. Knepley Logically collective 14847c6ae99SBarry Smith 14947c6ae99SBarry Smith Input Parameter: 15047c6ae99SBarry Smith + da - the distributed array 15147c6ae99SBarry Smith - vec - the vector, either a vector the same size as one obtained with 152564755cdSBarry Smith DMCreateGlobalVector() or DMCreateLocalVector() 15347c6ae99SBarry Smith 15447c6ae99SBarry Smith Output Parameter: 15547c6ae99SBarry Smith . array - the array 15647c6ae99SBarry Smith 15747c6ae99SBarry Smith Notes: 158aa219208SBarry Smith Call DMDAVecRestoreArrayDOF() once you have finished accessing the vector entries. 15947c6ae99SBarry Smith 16047c6ae99SBarry Smith In C, the indexing is "backwards" from what expects: array[k][j][i][DOF] NOT array[i][j][k][DOF]! 16147c6ae99SBarry Smith 1621b82215eSBarry Smith In Fortran 90 you do not need a version of DMDAVecRestoreArrayDOF() just use DMDAVecRestoreArrayF90() and declare your array with one higher dimension, 1631b82215eSBarry Smith see src/dm/examples/tutorials/ex11f90.F 1641b82215eSBarry Smith 16547c6ae99SBarry Smith Level: intermediate 16647c6ae99SBarry Smith 16747c6ae99SBarry Smith .keywords: distributed array, get, corners, nodes, local indices, coordinates 16847c6ae99SBarry Smith 169aa219208SBarry Smith .seealso: DMDAGetGhostCorners(), DMDAGetCorners(), VecGetArray(), VecRestoreArray(), DMDAVecRestoreArray(), DMDAVecGetArray(), DMDAVecRestoreArrayDOF() 17047c6ae99SBarry Smith @*/ 1717087cfbeSBarry Smith PetscErrorCode DMDAVecGetArrayDOF(DM da,Vec vec,void *array) 17247c6ae99SBarry Smith { 17347c6ae99SBarry Smith PetscErrorCode ierr; 17447c6ae99SBarry Smith PetscInt xs,ys,zs,xm,ym,zm,gxs,gys,gzs,gxm,gym,gzm,N,dim,dof; 17547c6ae99SBarry Smith 17647c6ae99SBarry Smith PetscFunctionBegin; 177aa219208SBarry Smith ierr = DMDAGetCorners(da,&xs,&ys,&zs,&xm,&ym,&zm);CHKERRQ(ierr); 178aa219208SBarry Smith ierr = DMDAGetGhostCorners(da,&gxs,&gys,&gzs,&gxm,&gym,&gzm);CHKERRQ(ierr); 1791321219cSEthan Coon ierr = DMDAGetInfo(da,&dim,0,0,0,0,0,0,&dof,0,0,0,0,0);CHKERRQ(ierr); 18047c6ae99SBarry Smith 18147c6ae99SBarry Smith /* Handle case where user passes in global vector as opposed to local */ 18247c6ae99SBarry Smith ierr = VecGetLocalSize(vec,&N);CHKERRQ(ierr); 18347c6ae99SBarry Smith if (N == xm*ym*zm*dof) { 18447c6ae99SBarry Smith gxm = xm; 18547c6ae99SBarry Smith gym = ym; 18647c6ae99SBarry Smith gzm = zm; 18747c6ae99SBarry Smith gxs = xs; 18847c6ae99SBarry Smith gys = ys; 18947c6ae99SBarry Smith gzs = zs; 19030729d88SBarry Smith } else if (N != gxm*gym*gzm*dof) SETERRQ3(PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"Vector local size %D is not compatible with DMDA local sizes %D %D\n",N,xm*ym*zm*dof,gxm*gym*gzm*dof); 19147c6ae99SBarry Smith 19247c6ae99SBarry Smith if (dim == 1) { 19347c6ae99SBarry Smith ierr = VecGetArray2d(vec,gxm,dof,gxs,0,(PetscScalar***)array);CHKERRQ(ierr); 19447c6ae99SBarry Smith } else if (dim == 2) { 19547c6ae99SBarry Smith ierr = VecGetArray3d(vec,gym,gxm,dof,gys,gxs,0,(PetscScalar****)array);CHKERRQ(ierr); 19647c6ae99SBarry Smith } else if (dim == 3) { 19747c6ae99SBarry Smith ierr = VecGetArray4d(vec,gzm,gym,gxm,dof,gzs,gys,gxs,0,(PetscScalar*****)array);CHKERRQ(ierr); 19830729d88SBarry Smith } else SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_CORRUPT,"DMDA dimension not 1, 2, or 3, it is %D\n",dim); 19947c6ae99SBarry Smith PetscFunctionReturn(0); 20047c6ae99SBarry Smith } 20147c6ae99SBarry Smith 20247c6ae99SBarry Smith #undef __FUNCT__ 203aa219208SBarry Smith #define __FUNCT__ "DMDAVecRestoreArrayDOF" 20447c6ae99SBarry Smith /*@ 205aa219208SBarry Smith DMDAVecRestoreArrayDOF - Restores a multiple dimension array obtained with DMDAVecGetArrayDOF() 20647c6ae99SBarry Smith 207*2ddbf755SMatthew G. Knepley Logically collective 20847c6ae99SBarry Smith 20947c6ae99SBarry Smith Input Parameter: 21047c6ae99SBarry Smith + da - the distributed array 21147c6ae99SBarry Smith . vec - the vector, either a vector the same size as one obtained with 212564755cdSBarry Smith DMCreateGlobalVector() or DMCreateLocalVector() 21347c6ae99SBarry Smith - array - the array 21447c6ae99SBarry Smith 21547c6ae99SBarry Smith Level: intermediate 21647c6ae99SBarry Smith 21747c6ae99SBarry Smith .keywords: distributed array, get, corners, nodes, local indices, coordinates 21847c6ae99SBarry Smith 219aa219208SBarry Smith .seealso: DMDAGetGhostCorners(), DMDAGetCorners(), VecGetArray(), VecRestoreArray(), DMDAVecGetArray(), DMDAVecGetArrayDOF(), DMDAVecRestoreArrayDOF() 22047c6ae99SBarry Smith @*/ 2217087cfbeSBarry Smith PetscErrorCode DMDAVecRestoreArrayDOF(DM da,Vec vec,void *array) 22247c6ae99SBarry Smith { 22347c6ae99SBarry Smith PetscErrorCode ierr; 22447c6ae99SBarry Smith PetscInt xs,ys,zs,xm,ym,zm,gxs,gys,gzs,gxm,gym,gzm,N,dim,dof; 22547c6ae99SBarry Smith 22647c6ae99SBarry Smith PetscFunctionBegin; 227aa219208SBarry Smith ierr = DMDAGetCorners(da,&xs,&ys,&zs,&xm,&ym,&zm);CHKERRQ(ierr); 228aa219208SBarry Smith ierr = DMDAGetGhostCorners(da,&gxs,&gys,&gzs,&gxm,&gym,&gzm);CHKERRQ(ierr); 2291321219cSEthan Coon ierr = DMDAGetInfo(da,&dim,0,0,0,0,0,0,&dof,0,0,0,0,0);CHKERRQ(ierr); 23047c6ae99SBarry Smith 23147c6ae99SBarry Smith /* Handle case where user passes in global vector as opposed to local */ 23247c6ae99SBarry Smith ierr = VecGetLocalSize(vec,&N);CHKERRQ(ierr); 23347c6ae99SBarry Smith if (N == xm*ym*zm*dof) { 23447c6ae99SBarry Smith gxm = xm; 23547c6ae99SBarry Smith gym = ym; 23647c6ae99SBarry Smith gzm = zm; 23747c6ae99SBarry Smith gxs = xs; 23847c6ae99SBarry Smith gys = ys; 23947c6ae99SBarry Smith gzs = zs; 24047c6ae99SBarry Smith } 24147c6ae99SBarry Smith 24247c6ae99SBarry Smith if (dim == 1) { 24347c6ae99SBarry Smith ierr = VecRestoreArray2d(vec,gxm,dof,gxs,0,(PetscScalar***)array);CHKERRQ(ierr); 24447c6ae99SBarry Smith } else if (dim == 2) { 24547c6ae99SBarry Smith ierr = VecRestoreArray3d(vec,gym,gxm,dof,gys,gxs,0,(PetscScalar****)array);CHKERRQ(ierr); 24647c6ae99SBarry Smith } else if (dim == 3) { 24747c6ae99SBarry Smith ierr = VecRestoreArray4d(vec,gzm,gym,gxm,dof,gzs,gys,gxs,0,(PetscScalar*****)array);CHKERRQ(ierr); 24830729d88SBarry Smith } else SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_CORRUPT,"DMDA dimension not 1, 2, or 3, it is %D\n",dim); 24947c6ae99SBarry Smith PetscFunctionReturn(0); 25047c6ae99SBarry Smith } 25147c6ae99SBarry Smith 2525edff71fSBarry Smith #undef __FUNCT__ 2535edff71fSBarry Smith #define __FUNCT__ "DMDAVecGetArrayRead" 2545edff71fSBarry Smith /*@C 2555edff71fSBarry Smith DMDAVecGetArrayRead - Returns a multiple dimension array that shares data with 2565edff71fSBarry Smith the underlying vector and is indexed using the global dimensions. 2575edff71fSBarry Smith 258*2ddbf755SMatthew G. Knepley Not collective 2595edff71fSBarry Smith 2605edff71fSBarry Smith Input Parameter: 2615edff71fSBarry Smith + da - the distributed array 2625edff71fSBarry Smith - vec - the vector, either a vector the same size as one obtained with DMCreateGlobalVector() or DMCreateLocalVector() 2635edff71fSBarry Smith 2645edff71fSBarry Smith Output Parameter: 2655edff71fSBarry Smith . array - the array 2665edff71fSBarry Smith 2675edff71fSBarry Smith Notes: 2685edff71fSBarry Smith Call DMDAVecRestoreArrayRead() once you have finished accessing the vector entries. 2695edff71fSBarry Smith 2705edff71fSBarry Smith In C, the indexing is "backwards" from what expects: array[k][j][i] NOT array[i][j][k]! 2715edff71fSBarry Smith 2725edff71fSBarry Smith If vec is a local vector (obtained with DMCreateLocalVector() etc) then the ghost point locations are accessible. If it is 2735edff71fSBarry Smith a global vector then the ghost points are not accessible. Of course with the local vector you will have had to do the 2745edff71fSBarry Smith 2755edff71fSBarry Smith appropriate DMGlobalToLocalBegin() and DMGlobalToLocalEnd() to have correct values in the ghost locations. 2765edff71fSBarry Smith 2775edff71fSBarry Smith Fortran Notes: From Fortran use DMDAVecGetArrayF90() and pass for the array type PetscScalar,pointer :: array(:,...,:) of the appropriate 2785edff71fSBarry Smith dimension. For a DMDA created with a dof of 1 use the dimension of the DMDA, for a DMDA created with a dof greater than 1 use one more than the 2795edff71fSBarry Smith dimension of the DMDA. The order of the indices is array(xs:xs+xm-1,ys:ys+ym-1,zs:zs+zm-1) (when dof is 1) otherwise 2805edff71fSBarry Smith array(0:dof-1,xs:xs+xm-1,ys:ys+ym-1,zs:zs+zm-1) where the values are obtained from 281af0996ceSBarry Smith DMDAGetCorners() for a global array or DMDAGetGhostCorners() for a local array. Include petsc/finclude/petscdmda.h90 to access this routine. 2825edff71fSBarry Smith 2835edff71fSBarry Smith Due to bugs in the compiler DMDAVecGetArrayF90() does not work with gfortran versions before 4.5 2845edff71fSBarry Smith 2855edff71fSBarry Smith Level: intermediate 2865edff71fSBarry Smith 2875edff71fSBarry Smith .keywords: distributed array, get, corners, nodes, local indices, coordinates 2885edff71fSBarry Smith 2895edff71fSBarry Smith .seealso: DMDAGetGhostCorners(), DMDAGetCorners(), VecGetArray(), VecRestoreArray(), DMDAVecRestoreArray(), DMDAVecRestoreArrayDOF() 2905edff71fSBarry Smith DMDAVecGetArrayDOF() 2915edff71fSBarry Smith @*/ 2925edff71fSBarry Smith PetscErrorCode DMDAVecGetArrayRead(DM da,Vec vec,void *array) 2935edff71fSBarry Smith { 2945edff71fSBarry Smith PetscErrorCode ierr; 2955edff71fSBarry Smith PetscInt xs,ys,zs,xm,ym,zm,gxs,gys,gzs,gxm,gym,gzm,N,dim,dof; 2965edff71fSBarry Smith 2975edff71fSBarry Smith PetscFunctionBegin; 2985edff71fSBarry Smith PetscValidHeaderSpecific(da, DM_CLASSID, 1); 2995edff71fSBarry Smith PetscValidHeaderSpecific(vec, VEC_CLASSID, 2); 3005edff71fSBarry Smith PetscValidPointer(array, 3); 3015edff71fSBarry Smith if (da->defaultSection) { 3025edff71fSBarry Smith ierr = VecGetArrayRead(vec,(const PetscScalar**)array);CHKERRQ(ierr); 3035edff71fSBarry Smith PetscFunctionReturn(0); 3045edff71fSBarry Smith } 3055edff71fSBarry Smith ierr = DMDAGetCorners(da,&xs,&ys,&zs,&xm,&ym,&zm);CHKERRQ(ierr); 3065edff71fSBarry Smith ierr = DMDAGetGhostCorners(da,&gxs,&gys,&gzs,&gxm,&gym,&gzm);CHKERRQ(ierr); 3075edff71fSBarry Smith ierr = DMDAGetInfo(da,&dim,0,0,0,0,0,0,&dof,0,0,0,0,0);CHKERRQ(ierr); 3085edff71fSBarry Smith 3095edff71fSBarry Smith /* Handle case where user passes in global vector as opposed to local */ 3105edff71fSBarry Smith ierr = VecGetLocalSize(vec,&N);CHKERRQ(ierr); 3115edff71fSBarry Smith if (N == xm*ym*zm*dof) { 3125edff71fSBarry Smith gxm = xm; 3135edff71fSBarry Smith gym = ym; 3145edff71fSBarry Smith gzm = zm; 3155edff71fSBarry Smith gxs = xs; 3165edff71fSBarry Smith gys = ys; 3175edff71fSBarry Smith gzs = zs; 3185edff71fSBarry Smith } else if (N != gxm*gym*gzm*dof) SETERRQ3(PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"Vector local size %D is not compatible with DMDA local sizes %D %D\n",N,xm*ym*zm*dof,gxm*gym*gzm*dof); 3195edff71fSBarry Smith 3205edff71fSBarry Smith if (dim == 1) { 3215edff71fSBarry Smith ierr = VecGetArray1dRead(vec,gxm*dof,gxs*dof,(PetscScalar**)array);CHKERRQ(ierr); 3225edff71fSBarry Smith } else if (dim == 2) { 3235edff71fSBarry Smith ierr = VecGetArray2dRead(vec,gym,gxm*dof,gys,gxs*dof,(PetscScalar***)array);CHKERRQ(ierr); 3245edff71fSBarry Smith } else if (dim == 3) { 3255edff71fSBarry Smith ierr = VecGetArray3dRead(vec,gzm,gym,gxm*dof,gzs,gys,gxs*dof,(PetscScalar****)array);CHKERRQ(ierr); 3265edff71fSBarry Smith } else SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_CORRUPT,"DMDA dimension not 1, 2, or 3, it is %D\n",dim); 3275edff71fSBarry Smith PetscFunctionReturn(0); 3285edff71fSBarry Smith } 3295edff71fSBarry Smith 3305edff71fSBarry Smith #undef __FUNCT__ 3315edff71fSBarry Smith #define __FUNCT__ "DMDAVecRestoreArrayRead" 3325edff71fSBarry Smith /*@ 3335edff71fSBarry Smith DMDAVecRestoreArrayRead - Restores a multiple dimension array obtained with DMDAVecGetArrayRead() 3345edff71fSBarry Smith 335*2ddbf755SMatthew G. Knepley Not collective 3365edff71fSBarry Smith 3375edff71fSBarry Smith Input Parameter: 3385edff71fSBarry Smith + da - the distributed array 3395edff71fSBarry Smith . vec - the vector, either a vector the same size as one obtained with 3405edff71fSBarry Smith DMCreateGlobalVector() or DMCreateLocalVector() 3415edff71fSBarry Smith - array - the array, non-NULL pointer is zeroed 3425edff71fSBarry Smith 3435edff71fSBarry Smith Level: intermediate 3445edff71fSBarry Smith 3455edff71fSBarry Smith Fortran Notes: From Fortran use DMDAVecRestoreArrayF90() 3465edff71fSBarry Smith 3475edff71fSBarry Smith .keywords: distributed array, get, corners, nodes, local indices, coordinates 3485edff71fSBarry Smith 3495edff71fSBarry Smith .seealso: DMDAGetGhostCorners(), DMDAGetCorners(), VecGetArray(), VecRestoreArray(), DMDAVecGetArray() 3505edff71fSBarry Smith @*/ 3515edff71fSBarry Smith PetscErrorCode DMDAVecRestoreArrayRead(DM da,Vec vec,void *array) 3525edff71fSBarry Smith { 3535edff71fSBarry Smith PetscErrorCode ierr; 3545edff71fSBarry Smith PetscInt xs,ys,zs,xm,ym,zm,gxs,gys,gzs,gxm,gym,gzm,N,dim,dof; 3555edff71fSBarry Smith 3565edff71fSBarry Smith PetscFunctionBegin; 3575edff71fSBarry Smith PetscValidHeaderSpecific(da, DM_CLASSID, 1); 3585edff71fSBarry Smith PetscValidHeaderSpecific(vec, VEC_CLASSID, 2); 3595edff71fSBarry Smith PetscValidPointer(array, 3); 3605edff71fSBarry Smith if (da->defaultSection) { 3615edff71fSBarry Smith ierr = VecRestoreArrayRead(vec,(const PetscScalar**)array);CHKERRQ(ierr); 3625edff71fSBarry Smith PetscFunctionReturn(0); 3635edff71fSBarry Smith } 3645edff71fSBarry Smith ierr = DMDAGetCorners(da,&xs,&ys,&zs,&xm,&ym,&zm);CHKERRQ(ierr); 3655edff71fSBarry Smith ierr = DMDAGetGhostCorners(da,&gxs,&gys,&gzs,&gxm,&gym,&gzm);CHKERRQ(ierr); 3665edff71fSBarry Smith ierr = DMDAGetInfo(da,&dim,0,0,0,0,0,0,&dof,0,0,0,0,0);CHKERRQ(ierr); 3675edff71fSBarry Smith 3685edff71fSBarry Smith /* Handle case where user passes in global vector as opposed to local */ 3695edff71fSBarry Smith ierr = VecGetLocalSize(vec,&N);CHKERRQ(ierr); 3705edff71fSBarry Smith if (N == xm*ym*zm*dof) { 3715edff71fSBarry Smith gxm = xm; 3725edff71fSBarry Smith gym = ym; 3735edff71fSBarry Smith gzm = zm; 3745edff71fSBarry Smith gxs = xs; 3755edff71fSBarry Smith gys = ys; 3765edff71fSBarry Smith gzs = zs; 3775edff71fSBarry Smith } else if (N != gxm*gym*gzm*dof) SETERRQ3(PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"Vector local size %D is not compatible with DMDA local sizes %D %D\n",N,xm*ym*zm*dof,gxm*gym*gzm*dof); 3785edff71fSBarry Smith 3795edff71fSBarry Smith if (dim == 1) { 3805edff71fSBarry Smith ierr = VecRestoreArray1dRead(vec,gxm*dof,gxs*dof,(PetscScalar**)array);CHKERRQ(ierr); 3815edff71fSBarry Smith } else if (dim == 2) { 3825edff71fSBarry Smith ierr = VecRestoreArray2dRead(vec,gym,gxm*dof,gys,gxs*dof,(PetscScalar***)array);CHKERRQ(ierr); 3835edff71fSBarry Smith } else if (dim == 3) { 3845edff71fSBarry Smith ierr = VecRestoreArray3dRead(vec,gzm,gym,gxm*dof,gzs,gys,gxs*dof,(PetscScalar****)array);CHKERRQ(ierr); 3855edff71fSBarry Smith } else SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_CORRUPT,"DMDA dimension not 1, 2, or 3, it is %D\n",dim); 3865edff71fSBarry Smith PetscFunctionReturn(0); 3875edff71fSBarry Smith } 3885edff71fSBarry Smith 3895edff71fSBarry Smith #undef __FUNCT__ 3905edff71fSBarry Smith #define __FUNCT__ "DMDAVecGetArrayDOFRead" 3915edff71fSBarry Smith /*@C 3925edff71fSBarry Smith DMDAVecGetArrayDOFRead - Returns a multiple dimension array that shares data with 3935edff71fSBarry Smith the underlying vector and is indexed using the global dimensions. 3945edff71fSBarry Smith 3955edff71fSBarry Smith Not Collective 3965edff71fSBarry Smith 3975edff71fSBarry Smith Input Parameter: 3985edff71fSBarry Smith + da - the distributed array 3995edff71fSBarry Smith - vec - the vector, either a vector the same size as one obtained with 4005edff71fSBarry Smith DMCreateGlobalVector() or DMCreateLocalVector() 4015edff71fSBarry Smith 4025edff71fSBarry Smith Output Parameter: 4035edff71fSBarry Smith . array - the array 4045edff71fSBarry Smith 4055edff71fSBarry Smith Notes: 4065edff71fSBarry Smith Call DMDAVecRestoreArrayDOFRead() once you have finished accessing the vector entries. 4075edff71fSBarry Smith 4085edff71fSBarry Smith In C, the indexing is "backwards" from what expects: array[k][j][i][DOF] NOT array[i][j][k][DOF]! 4095edff71fSBarry Smith 4105edff71fSBarry Smith In Fortran 90 you do not need a version of DMDAVecRestoreArrayDOF() just use DMDAVecRestoreArrayF90() and declare your array with one higher dimension, 4115edff71fSBarry Smith see src/dm/examples/tutorials/ex11f90.F 4125edff71fSBarry Smith 4135edff71fSBarry Smith Level: intermediate 4145edff71fSBarry Smith 4155edff71fSBarry Smith .keywords: distributed array, get, corners, nodes, local indices, coordinates 4165edff71fSBarry Smith 4175edff71fSBarry Smith .seealso: DMDAGetGhostCorners(), DMDAGetCorners(), VecGetArray(), VecRestoreArray(), DMDAVecRestoreArray(), DMDAVecGetArray(), DMDAVecRestoreArrayDOF() 4185edff71fSBarry Smith @*/ 4195edff71fSBarry Smith PetscErrorCode DMDAVecGetArrayDOFRead(DM da,Vec vec,void *array) 4205edff71fSBarry Smith { 4215edff71fSBarry Smith PetscErrorCode ierr; 4225edff71fSBarry Smith PetscInt xs,ys,zs,xm,ym,zm,gxs,gys,gzs,gxm,gym,gzm,N,dim,dof; 4235edff71fSBarry Smith 4245edff71fSBarry Smith PetscFunctionBegin; 4255edff71fSBarry Smith ierr = DMDAGetCorners(da,&xs,&ys,&zs,&xm,&ym,&zm);CHKERRQ(ierr); 4265edff71fSBarry Smith ierr = DMDAGetGhostCorners(da,&gxs,&gys,&gzs,&gxm,&gym,&gzm);CHKERRQ(ierr); 4275edff71fSBarry Smith ierr = DMDAGetInfo(da,&dim,0,0,0,0,0,0,&dof,0,0,0,0,0);CHKERRQ(ierr); 4285edff71fSBarry Smith 4295edff71fSBarry Smith /* Handle case where user passes in global vector as opposed to local */ 4305edff71fSBarry Smith ierr = VecGetLocalSize(vec,&N);CHKERRQ(ierr); 4315edff71fSBarry Smith if (N == xm*ym*zm*dof) { 4325edff71fSBarry Smith gxm = xm; 4335edff71fSBarry Smith gym = ym; 4345edff71fSBarry Smith gzm = zm; 4355edff71fSBarry Smith gxs = xs; 4365edff71fSBarry Smith gys = ys; 4375edff71fSBarry Smith gzs = zs; 4385edff71fSBarry Smith } else if (N != gxm*gym*gzm*dof) SETERRQ3(PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"Vector local size %D is not compatible with DMDA local sizes %D %D\n",N,xm*ym*zm*dof,gxm*gym*gzm*dof); 4395edff71fSBarry Smith 4405edff71fSBarry Smith if (dim == 1) { 4415edff71fSBarry Smith ierr = VecGetArray2dRead(vec,gxm,dof,gxs,0,(PetscScalar***)array);CHKERRQ(ierr); 4425edff71fSBarry Smith } else if (dim == 2) { 4435edff71fSBarry Smith ierr = VecGetArray3dRead(vec,gym,gxm,dof,gys,gxs,0,(PetscScalar****)array);CHKERRQ(ierr); 4445edff71fSBarry Smith } else if (dim == 3) { 4455edff71fSBarry Smith ierr = VecGetArray4dRead(vec,gzm,gym,gxm,dof,gzs,gys,gxs,0,(PetscScalar*****)array);CHKERRQ(ierr); 4465edff71fSBarry Smith } else SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_CORRUPT,"DMDA dimension not 1, 2, or 3, it is %D\n",dim); 4475edff71fSBarry Smith PetscFunctionReturn(0); 4485edff71fSBarry Smith } 4495edff71fSBarry Smith 4505edff71fSBarry Smith #undef __FUNCT__ 4515edff71fSBarry Smith #define __FUNCT__ "DMDAVecRestoreArrayDOFRead" 4525edff71fSBarry Smith /*@ 4535edff71fSBarry Smith DMDAVecRestoreArrayDOFRead - Restores a multiple dimension array obtained with DMDAVecGetArrayDOFRead() 4545edff71fSBarry Smith 4555edff71fSBarry Smith Not Collective 4565edff71fSBarry Smith 4575edff71fSBarry Smith Input Parameter: 4585edff71fSBarry Smith + da - the distributed array 4595edff71fSBarry Smith . vec - the vector, either a vector the same size as one obtained with 4605edff71fSBarry Smith DMCreateGlobalVector() or DMCreateLocalVector() 4615edff71fSBarry Smith - array - the array 4625edff71fSBarry Smith 4635edff71fSBarry Smith Level: intermediate 4645edff71fSBarry Smith 4655edff71fSBarry Smith .keywords: distributed array, get, corners, nodes, local indices, coordinates 4665edff71fSBarry Smith 4675edff71fSBarry Smith .seealso: DMDAGetGhostCorners(), DMDAGetCorners(), VecGetArray(), VecRestoreArray(), DMDAVecGetArray(), DMDAVecGetArrayDOF(), DMDAVecRestoreArrayDOF() 4685edff71fSBarry Smith @*/ 4695edff71fSBarry Smith PetscErrorCode DMDAVecRestoreArrayDOFRead(DM da,Vec vec,void *array) 4705edff71fSBarry Smith { 4715edff71fSBarry Smith PetscErrorCode ierr; 4725edff71fSBarry Smith PetscInt xs,ys,zs,xm,ym,zm,gxs,gys,gzs,gxm,gym,gzm,N,dim,dof; 4735edff71fSBarry Smith 4745edff71fSBarry Smith PetscFunctionBegin; 4755edff71fSBarry Smith ierr = DMDAGetCorners(da,&xs,&ys,&zs,&xm,&ym,&zm);CHKERRQ(ierr); 4765edff71fSBarry Smith ierr = DMDAGetGhostCorners(da,&gxs,&gys,&gzs,&gxm,&gym,&gzm);CHKERRQ(ierr); 4775edff71fSBarry Smith ierr = DMDAGetInfo(da,&dim,0,0,0,0,0,0,&dof,0,0,0,0,0);CHKERRQ(ierr); 4785edff71fSBarry Smith 4795edff71fSBarry Smith /* Handle case where user passes in global vector as opposed to local */ 4805edff71fSBarry Smith ierr = VecGetLocalSize(vec,&N);CHKERRQ(ierr); 4815edff71fSBarry Smith if (N == xm*ym*zm*dof) { 4825edff71fSBarry Smith gxm = xm; 4835edff71fSBarry Smith gym = ym; 4845edff71fSBarry Smith gzm = zm; 4855edff71fSBarry Smith gxs = xs; 4865edff71fSBarry Smith gys = ys; 4875edff71fSBarry Smith gzs = zs; 4885edff71fSBarry Smith } 4895edff71fSBarry Smith 4905edff71fSBarry Smith if (dim == 1) { 4915edff71fSBarry Smith ierr = VecRestoreArray2dRead(vec,gxm,dof,gxs,0,(PetscScalar***)array);CHKERRQ(ierr); 4925edff71fSBarry Smith } else if (dim == 2) { 4935edff71fSBarry Smith ierr = VecRestoreArray3dRead(vec,gym,gxm,dof,gys,gxs,0,(PetscScalar****)array);CHKERRQ(ierr); 4945edff71fSBarry Smith } else if (dim == 3) { 4955edff71fSBarry Smith ierr = VecRestoreArray4dRead(vec,gzm,gym,gxm,dof,gzs,gys,gxs,0,(PetscScalar*****)array);CHKERRQ(ierr); 4965edff71fSBarry Smith } else SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_CORRUPT,"DMDA dimension not 1, 2, or 3, it is %D\n",dim); 4975edff71fSBarry Smith PetscFunctionReturn(0); 4985edff71fSBarry Smith } 4995edff71fSBarry Smith 50047c6ae99SBarry Smith 50147c6ae99SBarry Smith 50247c6ae99SBarry Smith 50347c6ae99SBarry Smith 50447c6ae99SBarry Smith 50547c6ae99SBarry Smith 50647c6ae99SBarry Smith 50747c6ae99SBarry Smith 50847c6ae99SBarry Smith 50947c6ae99SBarry Smith 51047c6ae99SBarry Smith 51147c6ae99SBarry Smith 512