147c6ae99SBarry Smith 24035e84dSBarry Smith #include <petsc-private/dmdaimpl.h> /*I "petscdmda.h" I*/ 347c6ae99SBarry Smith 447c6ae99SBarry Smith #undef __FUNCT__ 5aa219208SBarry Smith #define __FUNCT__ "DMDAVecGetArray" 647c6ae99SBarry Smith /*@C 7aa219208SBarry Smith DMDAVecGetArray - Returns a multiple dimension array that shares data with 847c6ae99SBarry Smith the underlying vector and is indexed using the global dimensions. 947c6ae99SBarry Smith 100bb38f08SBarry Smith Collective on Vec 1147c6ae99SBarry Smith 1247c6ae99SBarry Smith Input Parameter: 1347c6ae99SBarry Smith + da - the distributed array 147e57d48aSBarry Smith - vec - the vector, either a vector the same size as one obtained with DMCreateGlobalVector() or DMCreateLocalVector() 1547c6ae99SBarry Smith 1647c6ae99SBarry Smith Output Parameter: 1747c6ae99SBarry Smith . array - the array 1847c6ae99SBarry Smith 1947c6ae99SBarry Smith Notes: 20aa219208SBarry Smith Call DMDAVecRestoreArray() once you have finished accessing the vector entries. 2147c6ae99SBarry Smith 2247c6ae99SBarry Smith In C, the indexing is "backwards" from what expects: array[k][j][i] NOT array[i][j][k]! 2347c6ae99SBarry Smith 247e57d48aSBarry Smith If vec is a local vector (obtained with DMCreateLocalVector() etc) then the ghost point locations are accessible. If it is 257e57d48aSBarry Smith a global vector then the ghost points are not accessible. Of course with the local vector you will have had to do the 2647c6ae99SBarry Smith 277e57d48aSBarry Smith appropriate DMGlobalToLocalBegin() and DMGlobalToLocalEnd() to have correct values in the ghost locations. 2847c6ae99SBarry Smith 29aa219208SBarry Smith Fortran Notes: From Fortran use DMDAVecGetArrayF90() and pass for the array type PetscScalar,pointer :: array(:,...,:) of the appropriate 30aa219208SBarry Smith dimension. For a DMDA created with a dof of 1 use the dimension of the DMDA, for a DMDA created with a dof greater than 1 use one more than the 31aa219208SBarry Smith dimension of the DMDA. The order of the indices is array(xs:xs+xm-1,ys:ys+ym-1,zs:zs+zm-1) (when dof is 1) otherwise 32bef27881SBarry Smith array(0:dof-1,xs:xs+xm-1,ys:ys+ym-1,zs:zs+zm-1) where the values are obtained from 338fb42493SBarry Smith DMDAGetCorners() for a global array or DMDAGetGhostCorners() for a local array. Include petsc-finclude/petscdmda.h90 to access this routine. 3447c6ae99SBarry Smith 35596f5af7SJed Brown Due to bugs in the compiler DMDAVecGetArrayF90() does not work with gfortran versions before 4.5 3647c6ae99SBarry Smith 3747c6ae99SBarry Smith Level: intermediate 3847c6ae99SBarry Smith 3947c6ae99SBarry Smith .keywords: distributed array, get, corners, nodes, local indices, coordinates 4047c6ae99SBarry Smith 41aa219208SBarry Smith .seealso: DMDAGetGhostCorners(), DMDAGetCorners(), VecGetArray(), VecRestoreArray(), DMDAVecRestoreArray(), DMDAVecRestoreArrayDOF() 426db82c94SMatthew G Knepley DMDAVecGetArrayDOF() 4347c6ae99SBarry Smith @*/ 447087cfbeSBarry Smith PetscErrorCode DMDAVecGetArray(DM da,Vec vec,void *array) 4547c6ae99SBarry Smith { 4647c6ae99SBarry Smith PetscErrorCode ierr; 4747c6ae99SBarry Smith PetscInt xs,ys,zs,xm,ym,zm,gxs,gys,gzs,gxm,gym,gzm,N,dim,dof; 4847c6ae99SBarry Smith 4947c6ae99SBarry Smith PetscFunctionBegin; 506db82c94SMatthew G Knepley PetscValidHeaderSpecific(da, DM_CLASSID, 1); 516db82c94SMatthew G Knepley PetscValidHeaderSpecific(vec, VEC_CLASSID, 2); 526db82c94SMatthew G Knepley PetscValidPointer(array, 3); 53aa1993deSMatthew G Knepley if (da->defaultSection) { 54aa1993deSMatthew G Knepley ierr = VecGetArray(vec,(PetscScalar**)array);CHKERRQ(ierr); 55aa1993deSMatthew G Knepley PetscFunctionReturn(0); 56aa1993deSMatthew G Knepley } 57aa219208SBarry Smith ierr = DMDAGetCorners(da,&xs,&ys,&zs,&xm,&ym,&zm);CHKERRQ(ierr); 58aa219208SBarry Smith ierr = DMDAGetGhostCorners(da,&gxs,&gys,&gzs,&gxm,&gym,&gzm);CHKERRQ(ierr); 591321219cSEthan Coon ierr = DMDAGetInfo(da,&dim,0,0,0,0,0,0,&dof,0,0,0,0,0);CHKERRQ(ierr); 6047c6ae99SBarry Smith 6147c6ae99SBarry Smith /* Handle case where user passes in global vector as opposed to local */ 6247c6ae99SBarry Smith ierr = VecGetLocalSize(vec,&N);CHKERRQ(ierr); 6347c6ae99SBarry Smith if (N == xm*ym*zm*dof) { 6447c6ae99SBarry Smith gxm = xm; 6547c6ae99SBarry Smith gym = ym; 6647c6ae99SBarry Smith gzm = zm; 6747c6ae99SBarry Smith gxs = xs; 6847c6ae99SBarry Smith gys = ys; 6947c6ae99SBarry Smith gzs = zs; 7030729d88SBarry Smith } else if (N != gxm*gym*gzm*dof) SETERRQ3(PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"Vector local size %D is not compatible with DMDA local sizes %D %D\n",N,xm*ym*zm*dof,gxm*gym*gzm*dof); 7147c6ae99SBarry Smith 7247c6ae99SBarry Smith if (dim == 1) { 7347c6ae99SBarry Smith ierr = VecGetArray1d(vec,gxm*dof,gxs*dof,(PetscScalar**)array);CHKERRQ(ierr); 7447c6ae99SBarry Smith } else if (dim == 2) { 7547c6ae99SBarry Smith ierr = VecGetArray2d(vec,gym,gxm*dof,gys,gxs*dof,(PetscScalar***)array);CHKERRQ(ierr); 7647c6ae99SBarry Smith } else if (dim == 3) { 7747c6ae99SBarry Smith ierr = VecGetArray3d(vec,gzm,gym,gxm*dof,gzs,gys,gxs*dof,(PetscScalar****)array);CHKERRQ(ierr); 7830729d88SBarry Smith } else SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_CORRUPT,"DMDA dimension not 1, 2, or 3, it is %D\n",dim); 7947c6ae99SBarry Smith PetscFunctionReturn(0); 8047c6ae99SBarry Smith } 8147c6ae99SBarry Smith 8247c6ae99SBarry Smith #undef __FUNCT__ 83aa219208SBarry Smith #define __FUNCT__ "DMDAVecRestoreArray" 8447c6ae99SBarry Smith /*@ 85aa219208SBarry Smith DMDAVecRestoreArray - Restores a multiple dimension array obtained with DMDAVecGetArray() 8647c6ae99SBarry Smith 870bb38f08SBarry Smith Collective on Vec 8847c6ae99SBarry Smith 8947c6ae99SBarry Smith Input Parameter: 9047c6ae99SBarry Smith + da - the distributed array 9147c6ae99SBarry Smith . vec - the vector, either a vector the same size as one obtained with 92564755cdSBarry Smith DMCreateGlobalVector() or DMCreateLocalVector() 93e5c84f05SJed Brown - array - the array, non-NULL pointer is zeroed 9447c6ae99SBarry Smith 9547c6ae99SBarry Smith Level: intermediate 9647c6ae99SBarry Smith 97aa219208SBarry Smith Fortran Notes: From Fortran use DMDAVecRestoreArrayF90() 9847c6ae99SBarry Smith 9947c6ae99SBarry Smith .keywords: distributed array, get, corners, nodes, local indices, coordinates 10047c6ae99SBarry Smith 101aa219208SBarry Smith .seealso: DMDAGetGhostCorners(), DMDAGetCorners(), VecGetArray(), VecRestoreArray(), DMDAVecGetArray() 10247c6ae99SBarry Smith @*/ 1037087cfbeSBarry Smith PetscErrorCode DMDAVecRestoreArray(DM da,Vec vec,void *array) 10447c6ae99SBarry Smith { 10547c6ae99SBarry Smith PetscErrorCode ierr; 10647c6ae99SBarry Smith PetscInt xs,ys,zs,xm,ym,zm,gxs,gys,gzs,gxm,gym,gzm,N,dim,dof; 10747c6ae99SBarry Smith 10847c6ae99SBarry Smith PetscFunctionBegin; 1096db82c94SMatthew G Knepley PetscValidHeaderSpecific(da, DM_CLASSID, 1); 1106db82c94SMatthew G Knepley PetscValidHeaderSpecific(vec, VEC_CLASSID, 2); 1116db82c94SMatthew G Knepley PetscValidPointer(array, 3); 112aa1993deSMatthew G Knepley if (da->defaultSection) { 113aa1993deSMatthew G Knepley ierr = VecRestoreArray(vec,(PetscScalar**)array);CHKERRQ(ierr); 114aa1993deSMatthew G Knepley PetscFunctionReturn(0); 115aa1993deSMatthew G Knepley } 116aa219208SBarry Smith ierr = DMDAGetCorners(da,&xs,&ys,&zs,&xm,&ym,&zm);CHKERRQ(ierr); 117aa219208SBarry Smith ierr = DMDAGetGhostCorners(da,&gxs,&gys,&gzs,&gxm,&gym,&gzm);CHKERRQ(ierr); 1181321219cSEthan Coon ierr = DMDAGetInfo(da,&dim,0,0,0,0,0,0,&dof,0,0,0,0,0);CHKERRQ(ierr); 11947c6ae99SBarry Smith 12047c6ae99SBarry Smith /* Handle case where user passes in global vector as opposed to local */ 12147c6ae99SBarry Smith ierr = VecGetLocalSize(vec,&N);CHKERRQ(ierr); 12247c6ae99SBarry Smith if (N == xm*ym*zm*dof) { 12347c6ae99SBarry Smith gxm = xm; 12447c6ae99SBarry Smith gym = ym; 12547c6ae99SBarry Smith gzm = zm; 12647c6ae99SBarry Smith gxs = xs; 12747c6ae99SBarry Smith gys = ys; 12847c6ae99SBarry Smith gzs = zs; 12930729d88SBarry Smith } else if (N != gxm*gym*gzm*dof) SETERRQ3(PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"Vector local size %D is not compatible with DMDA local sizes %D %D\n",N,xm*ym*zm*dof,gxm*gym*gzm*dof); 13047c6ae99SBarry Smith 13147c6ae99SBarry Smith if (dim == 1) { 13247c6ae99SBarry Smith ierr = VecRestoreArray1d(vec,gxm*dof,gxs*dof,(PetscScalar**)array);CHKERRQ(ierr); 13347c6ae99SBarry Smith } else if (dim == 2) { 13447c6ae99SBarry Smith ierr = VecRestoreArray2d(vec,gym,gxm*dof,gys,gxs*dof,(PetscScalar***)array);CHKERRQ(ierr); 13547c6ae99SBarry Smith } else if (dim == 3) { 13647c6ae99SBarry Smith ierr = VecRestoreArray3d(vec,gzm,gym,gxm*dof,gzs,gys,gxs*dof,(PetscScalar****)array);CHKERRQ(ierr); 13730729d88SBarry Smith } else SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_CORRUPT,"DMDA dimension not 1, 2, or 3, it is %D\n",dim); 13847c6ae99SBarry Smith PetscFunctionReturn(0); 13947c6ae99SBarry Smith } 14047c6ae99SBarry Smith 14147c6ae99SBarry Smith #undef __FUNCT__ 142aa219208SBarry Smith #define __FUNCT__ "DMDAVecGetArrayDOF" 14347c6ae99SBarry Smith /*@C 144aa219208SBarry Smith DMDAVecGetArrayDOF - Returns a multiple dimension array that shares data with 14547c6ae99SBarry Smith the underlying vector and is indexed using the global dimensions. 14647c6ae99SBarry Smith 14747c6ae99SBarry Smith Not Collective 14847c6ae99SBarry Smith 14947c6ae99SBarry Smith Input Parameter: 15047c6ae99SBarry Smith + da - the distributed array 15147c6ae99SBarry Smith - vec - the vector, either a vector the same size as one obtained with 152564755cdSBarry Smith DMCreateGlobalVector() or DMCreateLocalVector() 15347c6ae99SBarry Smith 15447c6ae99SBarry Smith Output Parameter: 15547c6ae99SBarry Smith . array - the array 15647c6ae99SBarry Smith 15747c6ae99SBarry Smith Notes: 158aa219208SBarry Smith Call DMDAVecRestoreArrayDOF() once you have finished accessing the vector entries. 15947c6ae99SBarry Smith 16047c6ae99SBarry Smith In C, the indexing is "backwards" from what expects: array[k][j][i][DOF] NOT array[i][j][k][DOF]! 16147c6ae99SBarry Smith 1621b82215eSBarry Smith In Fortran 90 you do not need a version of DMDAVecRestoreArrayDOF() just use DMDAVecRestoreArrayF90() and declare your array with one higher dimension, 1631b82215eSBarry Smith see src/dm/examples/tutorials/ex11f90.F 1641b82215eSBarry Smith 16547c6ae99SBarry Smith Level: intermediate 16647c6ae99SBarry Smith 16747c6ae99SBarry Smith .keywords: distributed array, get, corners, nodes, local indices, coordinates 16847c6ae99SBarry Smith 169aa219208SBarry Smith .seealso: DMDAGetGhostCorners(), DMDAGetCorners(), VecGetArray(), VecRestoreArray(), DMDAVecRestoreArray(), DMDAVecGetArray(), DMDAVecRestoreArrayDOF() 17047c6ae99SBarry Smith @*/ 1717087cfbeSBarry Smith PetscErrorCode DMDAVecGetArrayDOF(DM da,Vec vec,void *array) 17247c6ae99SBarry Smith { 17347c6ae99SBarry Smith PetscErrorCode ierr; 17447c6ae99SBarry Smith PetscInt xs,ys,zs,xm,ym,zm,gxs,gys,gzs,gxm,gym,gzm,N,dim,dof; 17547c6ae99SBarry Smith 17647c6ae99SBarry Smith PetscFunctionBegin; 177aa219208SBarry Smith ierr = DMDAGetCorners(da,&xs,&ys,&zs,&xm,&ym,&zm);CHKERRQ(ierr); 178aa219208SBarry Smith ierr = DMDAGetGhostCorners(da,&gxs,&gys,&gzs,&gxm,&gym,&gzm);CHKERRQ(ierr); 1791321219cSEthan Coon ierr = DMDAGetInfo(da,&dim,0,0,0,0,0,0,&dof,0,0,0,0,0);CHKERRQ(ierr); 18047c6ae99SBarry Smith 18147c6ae99SBarry Smith /* Handle case where user passes in global vector as opposed to local */ 18247c6ae99SBarry Smith ierr = VecGetLocalSize(vec,&N);CHKERRQ(ierr); 18347c6ae99SBarry Smith if (N == xm*ym*zm*dof) { 18447c6ae99SBarry Smith gxm = xm; 18547c6ae99SBarry Smith gym = ym; 18647c6ae99SBarry Smith gzm = zm; 18747c6ae99SBarry Smith gxs = xs; 18847c6ae99SBarry Smith gys = ys; 18947c6ae99SBarry Smith gzs = zs; 19030729d88SBarry Smith } else if (N != gxm*gym*gzm*dof) SETERRQ3(PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"Vector local size %D is not compatible with DMDA local sizes %D %D\n",N,xm*ym*zm*dof,gxm*gym*gzm*dof); 19147c6ae99SBarry Smith 19247c6ae99SBarry Smith if (dim == 1) { 19347c6ae99SBarry Smith ierr = VecGetArray2d(vec,gxm,dof,gxs,0,(PetscScalar***)array);CHKERRQ(ierr); 19447c6ae99SBarry Smith } else if (dim == 2) { 19547c6ae99SBarry Smith ierr = VecGetArray3d(vec,gym,gxm,dof,gys,gxs,0,(PetscScalar****)array);CHKERRQ(ierr); 19647c6ae99SBarry Smith } else if (dim == 3) { 19747c6ae99SBarry Smith ierr = VecGetArray4d(vec,gzm,gym,gxm,dof,gzs,gys,gxs,0,(PetscScalar*****)array);CHKERRQ(ierr); 19830729d88SBarry Smith } else SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_CORRUPT,"DMDA dimension not 1, 2, or 3, it is %D\n",dim); 19947c6ae99SBarry Smith PetscFunctionReturn(0); 20047c6ae99SBarry Smith } 20147c6ae99SBarry Smith 20247c6ae99SBarry Smith #undef __FUNCT__ 203aa219208SBarry Smith #define __FUNCT__ "DMDAVecRestoreArrayDOF" 20447c6ae99SBarry Smith /*@ 205aa219208SBarry Smith DMDAVecRestoreArrayDOF - Restores a multiple dimension array obtained with DMDAVecGetArrayDOF() 20647c6ae99SBarry Smith 20747c6ae99SBarry Smith Not Collective 20847c6ae99SBarry Smith 20947c6ae99SBarry Smith Input Parameter: 21047c6ae99SBarry Smith + da - the distributed array 21147c6ae99SBarry Smith . vec - the vector, either a vector the same size as one obtained with 212564755cdSBarry Smith DMCreateGlobalVector() or DMCreateLocalVector() 21347c6ae99SBarry Smith - array - the array 21447c6ae99SBarry Smith 21547c6ae99SBarry Smith Level: intermediate 21647c6ae99SBarry Smith 21747c6ae99SBarry Smith .keywords: distributed array, get, corners, nodes, local indices, coordinates 21847c6ae99SBarry Smith 219aa219208SBarry Smith .seealso: DMDAGetGhostCorners(), DMDAGetCorners(), VecGetArray(), VecRestoreArray(), DMDAVecGetArray(), DMDAVecGetArrayDOF(), DMDAVecRestoreArrayDOF() 22047c6ae99SBarry Smith @*/ 2217087cfbeSBarry Smith PetscErrorCode DMDAVecRestoreArrayDOF(DM da,Vec vec,void *array) 22247c6ae99SBarry Smith { 22347c6ae99SBarry Smith PetscErrorCode ierr; 22447c6ae99SBarry Smith PetscInt xs,ys,zs,xm,ym,zm,gxs,gys,gzs,gxm,gym,gzm,N,dim,dof; 22547c6ae99SBarry Smith 22647c6ae99SBarry Smith PetscFunctionBegin; 227aa219208SBarry Smith ierr = DMDAGetCorners(da,&xs,&ys,&zs,&xm,&ym,&zm);CHKERRQ(ierr); 228aa219208SBarry Smith ierr = DMDAGetGhostCorners(da,&gxs,&gys,&gzs,&gxm,&gym,&gzm);CHKERRQ(ierr); 2291321219cSEthan Coon ierr = DMDAGetInfo(da,&dim,0,0,0,0,0,0,&dof,0,0,0,0,0);CHKERRQ(ierr); 23047c6ae99SBarry Smith 23147c6ae99SBarry Smith /* Handle case where user passes in global vector as opposed to local */ 23247c6ae99SBarry Smith ierr = VecGetLocalSize(vec,&N);CHKERRQ(ierr); 23347c6ae99SBarry Smith if (N == xm*ym*zm*dof) { 23447c6ae99SBarry Smith gxm = xm; 23547c6ae99SBarry Smith gym = ym; 23647c6ae99SBarry Smith gzm = zm; 23747c6ae99SBarry Smith gxs = xs; 23847c6ae99SBarry Smith gys = ys; 23947c6ae99SBarry Smith gzs = zs; 24047c6ae99SBarry Smith } 24147c6ae99SBarry Smith 24247c6ae99SBarry Smith if (dim == 1) { 24347c6ae99SBarry Smith ierr = VecRestoreArray2d(vec,gxm,dof,gxs,0,(PetscScalar***)array);CHKERRQ(ierr); 24447c6ae99SBarry Smith } else if (dim == 2) { 24547c6ae99SBarry Smith ierr = VecRestoreArray3d(vec,gym,gxm,dof,gys,gxs,0,(PetscScalar****)array);CHKERRQ(ierr); 24647c6ae99SBarry Smith } else if (dim == 3) { 24747c6ae99SBarry Smith ierr = VecRestoreArray4d(vec,gzm,gym,gxm,dof,gzs,gys,gxs,0,(PetscScalar*****)array);CHKERRQ(ierr); 24830729d88SBarry Smith } else SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_CORRUPT,"DMDA dimension not 1, 2, or 3, it is %D\n",dim); 24947c6ae99SBarry Smith PetscFunctionReturn(0); 25047c6ae99SBarry Smith } 25147c6ae99SBarry Smith 252*5edff71fSBarry Smith #undef __FUNCT__ 253*5edff71fSBarry Smith #define __FUNCT__ "DMDAVecGetArrayRead" 254*5edff71fSBarry Smith /*@C 255*5edff71fSBarry Smith DMDAVecGetArrayRead - Returns a multiple dimension array that shares data with 256*5edff71fSBarry Smith the underlying vector and is indexed using the global dimensions. 257*5edff71fSBarry Smith 258*5edff71fSBarry Smith Collective on Vec 259*5edff71fSBarry Smith 260*5edff71fSBarry Smith Input Parameter: 261*5edff71fSBarry Smith + da - the distributed array 262*5edff71fSBarry Smith - vec - the vector, either a vector the same size as one obtained with DMCreateGlobalVector() or DMCreateLocalVector() 263*5edff71fSBarry Smith 264*5edff71fSBarry Smith Output Parameter: 265*5edff71fSBarry Smith . array - the array 266*5edff71fSBarry Smith 267*5edff71fSBarry Smith Notes: 268*5edff71fSBarry Smith Call DMDAVecRestoreArrayRead() once you have finished accessing the vector entries. 269*5edff71fSBarry Smith 270*5edff71fSBarry Smith In C, the indexing is "backwards" from what expects: array[k][j][i] NOT array[i][j][k]! 271*5edff71fSBarry Smith 272*5edff71fSBarry Smith If vec is a local vector (obtained with DMCreateLocalVector() etc) then the ghost point locations are accessible. If it is 273*5edff71fSBarry Smith a global vector then the ghost points are not accessible. Of course with the local vector you will have had to do the 274*5edff71fSBarry Smith 275*5edff71fSBarry Smith appropriate DMGlobalToLocalBegin() and DMGlobalToLocalEnd() to have correct values in the ghost locations. 276*5edff71fSBarry Smith 277*5edff71fSBarry Smith Fortran Notes: From Fortran use DMDAVecGetArrayF90() and pass for the array type PetscScalar,pointer :: array(:,...,:) of the appropriate 278*5edff71fSBarry Smith dimension. For a DMDA created with a dof of 1 use the dimension of the DMDA, for a DMDA created with a dof greater than 1 use one more than the 279*5edff71fSBarry Smith dimension of the DMDA. The order of the indices is array(xs:xs+xm-1,ys:ys+ym-1,zs:zs+zm-1) (when dof is 1) otherwise 280*5edff71fSBarry Smith array(0:dof-1,xs:xs+xm-1,ys:ys+ym-1,zs:zs+zm-1) where the values are obtained from 281*5edff71fSBarry Smith DMDAGetCorners() for a global array or DMDAGetGhostCorners() for a local array. Include petsc-finclude/petscdmda.h90 to access this routine. 282*5edff71fSBarry Smith 283*5edff71fSBarry Smith Due to bugs in the compiler DMDAVecGetArrayF90() does not work with gfortran versions before 4.5 284*5edff71fSBarry Smith 285*5edff71fSBarry Smith Level: intermediate 286*5edff71fSBarry Smith 287*5edff71fSBarry Smith .keywords: distributed array, get, corners, nodes, local indices, coordinates 288*5edff71fSBarry Smith 289*5edff71fSBarry Smith .seealso: DMDAGetGhostCorners(), DMDAGetCorners(), VecGetArray(), VecRestoreArray(), DMDAVecRestoreArray(), DMDAVecRestoreArrayDOF() 290*5edff71fSBarry Smith DMDAVecGetArrayDOF() 291*5edff71fSBarry Smith @*/ 292*5edff71fSBarry Smith PetscErrorCode DMDAVecGetArrayRead(DM da,Vec vec,void *array) 293*5edff71fSBarry Smith { 294*5edff71fSBarry Smith PetscErrorCode ierr; 295*5edff71fSBarry Smith PetscInt xs,ys,zs,xm,ym,zm,gxs,gys,gzs,gxm,gym,gzm,N,dim,dof; 296*5edff71fSBarry Smith 297*5edff71fSBarry Smith PetscFunctionBegin; 298*5edff71fSBarry Smith PetscValidHeaderSpecific(da, DM_CLASSID, 1); 299*5edff71fSBarry Smith PetscValidHeaderSpecific(vec, VEC_CLASSID, 2); 300*5edff71fSBarry Smith PetscValidPointer(array, 3); 301*5edff71fSBarry Smith if (da->defaultSection) { 302*5edff71fSBarry Smith ierr = VecGetArrayRead(vec,(const PetscScalar**)array);CHKERRQ(ierr); 303*5edff71fSBarry Smith PetscFunctionReturn(0); 304*5edff71fSBarry Smith } 305*5edff71fSBarry Smith ierr = DMDAGetCorners(da,&xs,&ys,&zs,&xm,&ym,&zm);CHKERRQ(ierr); 306*5edff71fSBarry Smith ierr = DMDAGetGhostCorners(da,&gxs,&gys,&gzs,&gxm,&gym,&gzm);CHKERRQ(ierr); 307*5edff71fSBarry Smith ierr = DMDAGetInfo(da,&dim,0,0,0,0,0,0,&dof,0,0,0,0,0);CHKERRQ(ierr); 308*5edff71fSBarry Smith 309*5edff71fSBarry Smith /* Handle case where user passes in global vector as opposed to local */ 310*5edff71fSBarry Smith ierr = VecGetLocalSize(vec,&N);CHKERRQ(ierr); 311*5edff71fSBarry Smith if (N == xm*ym*zm*dof) { 312*5edff71fSBarry Smith gxm = xm; 313*5edff71fSBarry Smith gym = ym; 314*5edff71fSBarry Smith gzm = zm; 315*5edff71fSBarry Smith gxs = xs; 316*5edff71fSBarry Smith gys = ys; 317*5edff71fSBarry Smith gzs = zs; 318*5edff71fSBarry Smith } else if (N != gxm*gym*gzm*dof) SETERRQ3(PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"Vector local size %D is not compatible with DMDA local sizes %D %D\n",N,xm*ym*zm*dof,gxm*gym*gzm*dof); 319*5edff71fSBarry Smith 320*5edff71fSBarry Smith if (dim == 1) { 321*5edff71fSBarry Smith ierr = VecGetArray1dRead(vec,gxm*dof,gxs*dof,(PetscScalar**)array);CHKERRQ(ierr); 322*5edff71fSBarry Smith } else if (dim == 2) { 323*5edff71fSBarry Smith ierr = VecGetArray2dRead(vec,gym,gxm*dof,gys,gxs*dof,(PetscScalar***)array);CHKERRQ(ierr); 324*5edff71fSBarry Smith } else if (dim == 3) { 325*5edff71fSBarry Smith ierr = VecGetArray3dRead(vec,gzm,gym,gxm*dof,gzs,gys,gxs*dof,(PetscScalar****)array);CHKERRQ(ierr); 326*5edff71fSBarry Smith } else SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_CORRUPT,"DMDA dimension not 1, 2, or 3, it is %D\n",dim); 327*5edff71fSBarry Smith PetscFunctionReturn(0); 328*5edff71fSBarry Smith } 329*5edff71fSBarry Smith 330*5edff71fSBarry Smith #undef __FUNCT__ 331*5edff71fSBarry Smith #define __FUNCT__ "DMDAVecRestoreArrayRead" 332*5edff71fSBarry Smith /*@ 333*5edff71fSBarry Smith DMDAVecRestoreArrayRead - Restores a multiple dimension array obtained with DMDAVecGetArrayRead() 334*5edff71fSBarry Smith 335*5edff71fSBarry Smith Collective on Vec 336*5edff71fSBarry Smith 337*5edff71fSBarry Smith Input Parameter: 338*5edff71fSBarry Smith + da - the distributed array 339*5edff71fSBarry Smith . vec - the vector, either a vector the same size as one obtained with 340*5edff71fSBarry Smith DMCreateGlobalVector() or DMCreateLocalVector() 341*5edff71fSBarry Smith - array - the array, non-NULL pointer is zeroed 342*5edff71fSBarry Smith 343*5edff71fSBarry Smith Level: intermediate 344*5edff71fSBarry Smith 345*5edff71fSBarry Smith Fortran Notes: From Fortran use DMDAVecRestoreArrayF90() 346*5edff71fSBarry Smith 347*5edff71fSBarry Smith .keywords: distributed array, get, corners, nodes, local indices, coordinates 348*5edff71fSBarry Smith 349*5edff71fSBarry Smith .seealso: DMDAGetGhostCorners(), DMDAGetCorners(), VecGetArray(), VecRestoreArray(), DMDAVecGetArray() 350*5edff71fSBarry Smith @*/ 351*5edff71fSBarry Smith PetscErrorCode DMDAVecRestoreArrayRead(DM da,Vec vec,void *array) 352*5edff71fSBarry Smith { 353*5edff71fSBarry Smith PetscErrorCode ierr; 354*5edff71fSBarry Smith PetscInt xs,ys,zs,xm,ym,zm,gxs,gys,gzs,gxm,gym,gzm,N,dim,dof; 355*5edff71fSBarry Smith 356*5edff71fSBarry Smith PetscFunctionBegin; 357*5edff71fSBarry Smith PetscValidHeaderSpecific(da, DM_CLASSID, 1); 358*5edff71fSBarry Smith PetscValidHeaderSpecific(vec, VEC_CLASSID, 2); 359*5edff71fSBarry Smith PetscValidPointer(array, 3); 360*5edff71fSBarry Smith if (da->defaultSection) { 361*5edff71fSBarry Smith ierr = VecRestoreArrayRead(vec,(const PetscScalar**)array);CHKERRQ(ierr); 362*5edff71fSBarry Smith PetscFunctionReturn(0); 363*5edff71fSBarry Smith } 364*5edff71fSBarry Smith ierr = DMDAGetCorners(da,&xs,&ys,&zs,&xm,&ym,&zm);CHKERRQ(ierr); 365*5edff71fSBarry Smith ierr = DMDAGetGhostCorners(da,&gxs,&gys,&gzs,&gxm,&gym,&gzm);CHKERRQ(ierr); 366*5edff71fSBarry Smith ierr = DMDAGetInfo(da,&dim,0,0,0,0,0,0,&dof,0,0,0,0,0);CHKERRQ(ierr); 367*5edff71fSBarry Smith 368*5edff71fSBarry Smith /* Handle case where user passes in global vector as opposed to local */ 369*5edff71fSBarry Smith ierr = VecGetLocalSize(vec,&N);CHKERRQ(ierr); 370*5edff71fSBarry Smith if (N == xm*ym*zm*dof) { 371*5edff71fSBarry Smith gxm = xm; 372*5edff71fSBarry Smith gym = ym; 373*5edff71fSBarry Smith gzm = zm; 374*5edff71fSBarry Smith gxs = xs; 375*5edff71fSBarry Smith gys = ys; 376*5edff71fSBarry Smith gzs = zs; 377*5edff71fSBarry Smith } else if (N != gxm*gym*gzm*dof) SETERRQ3(PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"Vector local size %D is not compatible with DMDA local sizes %D %D\n",N,xm*ym*zm*dof,gxm*gym*gzm*dof); 378*5edff71fSBarry Smith 379*5edff71fSBarry Smith if (dim == 1) { 380*5edff71fSBarry Smith ierr = VecRestoreArray1dRead(vec,gxm*dof,gxs*dof,(PetscScalar**)array);CHKERRQ(ierr); 381*5edff71fSBarry Smith } else if (dim == 2) { 382*5edff71fSBarry Smith ierr = VecRestoreArray2dRead(vec,gym,gxm*dof,gys,gxs*dof,(PetscScalar***)array);CHKERRQ(ierr); 383*5edff71fSBarry Smith } else if (dim == 3) { 384*5edff71fSBarry Smith ierr = VecRestoreArray3dRead(vec,gzm,gym,gxm*dof,gzs,gys,gxs*dof,(PetscScalar****)array);CHKERRQ(ierr); 385*5edff71fSBarry Smith } else SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_CORRUPT,"DMDA dimension not 1, 2, or 3, it is %D\n",dim); 386*5edff71fSBarry Smith PetscFunctionReturn(0); 387*5edff71fSBarry Smith } 388*5edff71fSBarry Smith 389*5edff71fSBarry Smith #undef __FUNCT__ 390*5edff71fSBarry Smith #define __FUNCT__ "DMDAVecGetArrayDOFRead" 391*5edff71fSBarry Smith /*@C 392*5edff71fSBarry Smith DMDAVecGetArrayDOFRead - Returns a multiple dimension array that shares data with 393*5edff71fSBarry Smith the underlying vector and is indexed using the global dimensions. 394*5edff71fSBarry Smith 395*5edff71fSBarry Smith Not Collective 396*5edff71fSBarry Smith 397*5edff71fSBarry Smith Input Parameter: 398*5edff71fSBarry Smith + da - the distributed array 399*5edff71fSBarry Smith - vec - the vector, either a vector the same size as one obtained with 400*5edff71fSBarry Smith DMCreateGlobalVector() or DMCreateLocalVector() 401*5edff71fSBarry Smith 402*5edff71fSBarry Smith Output Parameter: 403*5edff71fSBarry Smith . array - the array 404*5edff71fSBarry Smith 405*5edff71fSBarry Smith Notes: 406*5edff71fSBarry Smith Call DMDAVecRestoreArrayDOFRead() once you have finished accessing the vector entries. 407*5edff71fSBarry Smith 408*5edff71fSBarry Smith In C, the indexing is "backwards" from what expects: array[k][j][i][DOF] NOT array[i][j][k][DOF]! 409*5edff71fSBarry Smith 410*5edff71fSBarry Smith In Fortran 90 you do not need a version of DMDAVecRestoreArrayDOF() just use DMDAVecRestoreArrayF90() and declare your array with one higher dimension, 411*5edff71fSBarry Smith see src/dm/examples/tutorials/ex11f90.F 412*5edff71fSBarry Smith 413*5edff71fSBarry Smith Level: intermediate 414*5edff71fSBarry Smith 415*5edff71fSBarry Smith .keywords: distributed array, get, corners, nodes, local indices, coordinates 416*5edff71fSBarry Smith 417*5edff71fSBarry Smith .seealso: DMDAGetGhostCorners(), DMDAGetCorners(), VecGetArray(), VecRestoreArray(), DMDAVecRestoreArray(), DMDAVecGetArray(), DMDAVecRestoreArrayDOF() 418*5edff71fSBarry Smith @*/ 419*5edff71fSBarry Smith PetscErrorCode DMDAVecGetArrayDOFRead(DM da,Vec vec,void *array) 420*5edff71fSBarry Smith { 421*5edff71fSBarry Smith PetscErrorCode ierr; 422*5edff71fSBarry Smith PetscInt xs,ys,zs,xm,ym,zm,gxs,gys,gzs,gxm,gym,gzm,N,dim,dof; 423*5edff71fSBarry Smith 424*5edff71fSBarry Smith PetscFunctionBegin; 425*5edff71fSBarry Smith ierr = DMDAGetCorners(da,&xs,&ys,&zs,&xm,&ym,&zm);CHKERRQ(ierr); 426*5edff71fSBarry Smith ierr = DMDAGetGhostCorners(da,&gxs,&gys,&gzs,&gxm,&gym,&gzm);CHKERRQ(ierr); 427*5edff71fSBarry Smith ierr = DMDAGetInfo(da,&dim,0,0,0,0,0,0,&dof,0,0,0,0,0);CHKERRQ(ierr); 428*5edff71fSBarry Smith 429*5edff71fSBarry Smith /* Handle case where user passes in global vector as opposed to local */ 430*5edff71fSBarry Smith ierr = VecGetLocalSize(vec,&N);CHKERRQ(ierr); 431*5edff71fSBarry Smith if (N == xm*ym*zm*dof) { 432*5edff71fSBarry Smith gxm = xm; 433*5edff71fSBarry Smith gym = ym; 434*5edff71fSBarry Smith gzm = zm; 435*5edff71fSBarry Smith gxs = xs; 436*5edff71fSBarry Smith gys = ys; 437*5edff71fSBarry Smith gzs = zs; 438*5edff71fSBarry Smith } else if (N != gxm*gym*gzm*dof) SETERRQ3(PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"Vector local size %D is not compatible with DMDA local sizes %D %D\n",N,xm*ym*zm*dof,gxm*gym*gzm*dof); 439*5edff71fSBarry Smith 440*5edff71fSBarry Smith if (dim == 1) { 441*5edff71fSBarry Smith ierr = VecGetArray2dRead(vec,gxm,dof,gxs,0,(PetscScalar***)array);CHKERRQ(ierr); 442*5edff71fSBarry Smith } else if (dim == 2) { 443*5edff71fSBarry Smith ierr = VecGetArray3dRead(vec,gym,gxm,dof,gys,gxs,0,(PetscScalar****)array);CHKERRQ(ierr); 444*5edff71fSBarry Smith } else if (dim == 3) { 445*5edff71fSBarry Smith ierr = VecGetArray4dRead(vec,gzm,gym,gxm,dof,gzs,gys,gxs,0,(PetscScalar*****)array);CHKERRQ(ierr); 446*5edff71fSBarry Smith } else SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_CORRUPT,"DMDA dimension not 1, 2, or 3, it is %D\n",dim); 447*5edff71fSBarry Smith PetscFunctionReturn(0); 448*5edff71fSBarry Smith } 449*5edff71fSBarry Smith 450*5edff71fSBarry Smith #undef __FUNCT__ 451*5edff71fSBarry Smith #define __FUNCT__ "DMDAVecRestoreArrayDOFRead" 452*5edff71fSBarry Smith /*@ 453*5edff71fSBarry Smith DMDAVecRestoreArrayDOFRead - Restores a multiple dimension array obtained with DMDAVecGetArrayDOFRead() 454*5edff71fSBarry Smith 455*5edff71fSBarry Smith Not Collective 456*5edff71fSBarry Smith 457*5edff71fSBarry Smith Input Parameter: 458*5edff71fSBarry Smith + da - the distributed array 459*5edff71fSBarry Smith . vec - the vector, either a vector the same size as one obtained with 460*5edff71fSBarry Smith DMCreateGlobalVector() or DMCreateLocalVector() 461*5edff71fSBarry Smith - array - the array 462*5edff71fSBarry Smith 463*5edff71fSBarry Smith Level: intermediate 464*5edff71fSBarry Smith 465*5edff71fSBarry Smith .keywords: distributed array, get, corners, nodes, local indices, coordinates 466*5edff71fSBarry Smith 467*5edff71fSBarry Smith .seealso: DMDAGetGhostCorners(), DMDAGetCorners(), VecGetArray(), VecRestoreArray(), DMDAVecGetArray(), DMDAVecGetArrayDOF(), DMDAVecRestoreArrayDOF() 468*5edff71fSBarry Smith @*/ 469*5edff71fSBarry Smith PetscErrorCode DMDAVecRestoreArrayDOFRead(DM da,Vec vec,void *array) 470*5edff71fSBarry Smith { 471*5edff71fSBarry Smith PetscErrorCode ierr; 472*5edff71fSBarry Smith PetscInt xs,ys,zs,xm,ym,zm,gxs,gys,gzs,gxm,gym,gzm,N,dim,dof; 473*5edff71fSBarry Smith 474*5edff71fSBarry Smith PetscFunctionBegin; 475*5edff71fSBarry Smith ierr = DMDAGetCorners(da,&xs,&ys,&zs,&xm,&ym,&zm);CHKERRQ(ierr); 476*5edff71fSBarry Smith ierr = DMDAGetGhostCorners(da,&gxs,&gys,&gzs,&gxm,&gym,&gzm);CHKERRQ(ierr); 477*5edff71fSBarry Smith ierr = DMDAGetInfo(da,&dim,0,0,0,0,0,0,&dof,0,0,0,0,0);CHKERRQ(ierr); 478*5edff71fSBarry Smith 479*5edff71fSBarry Smith /* Handle case where user passes in global vector as opposed to local */ 480*5edff71fSBarry Smith ierr = VecGetLocalSize(vec,&N);CHKERRQ(ierr); 481*5edff71fSBarry Smith if (N == xm*ym*zm*dof) { 482*5edff71fSBarry Smith gxm = xm; 483*5edff71fSBarry Smith gym = ym; 484*5edff71fSBarry Smith gzm = zm; 485*5edff71fSBarry Smith gxs = xs; 486*5edff71fSBarry Smith gys = ys; 487*5edff71fSBarry Smith gzs = zs; 488*5edff71fSBarry Smith } 489*5edff71fSBarry Smith 490*5edff71fSBarry Smith if (dim == 1) { 491*5edff71fSBarry Smith ierr = VecRestoreArray2dRead(vec,gxm,dof,gxs,0,(PetscScalar***)array);CHKERRQ(ierr); 492*5edff71fSBarry Smith } else if (dim == 2) { 493*5edff71fSBarry Smith ierr = VecRestoreArray3dRead(vec,gym,gxm,dof,gys,gxs,0,(PetscScalar****)array);CHKERRQ(ierr); 494*5edff71fSBarry Smith } else if (dim == 3) { 495*5edff71fSBarry Smith ierr = VecRestoreArray4dRead(vec,gzm,gym,gxm,dof,gzs,gys,gxs,0,(PetscScalar*****)array);CHKERRQ(ierr); 496*5edff71fSBarry Smith } else SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_CORRUPT,"DMDA dimension not 1, 2, or 3, it is %D\n",dim); 497*5edff71fSBarry Smith PetscFunctionReturn(0); 498*5edff71fSBarry Smith } 499*5edff71fSBarry Smith 50047c6ae99SBarry Smith 50147c6ae99SBarry Smith 50247c6ae99SBarry Smith 50347c6ae99SBarry Smith 50447c6ae99SBarry Smith 50547c6ae99SBarry Smith 50647c6ae99SBarry Smith 50747c6ae99SBarry Smith 50847c6ae99SBarry Smith 50947c6ae99SBarry Smith 51047c6ae99SBarry Smith 51147c6ae99SBarry Smith 512