147c6ae99SBarry Smith 2af0996ceSBarry Smith #include <petsc/private/dmdaimpl.h> /*I "petscdmda.h" I*/ 347c6ae99SBarry Smith 447c6ae99SBarry Smith /*@C 5aa219208SBarry Smith DMDAVecGetArray - Returns a multiple dimension array that shares data with 647c6ae99SBarry Smith the underlying vector and is indexed using the global dimensions. 747c6ae99SBarry Smith 82ddbf755SMatthew G. Knepley Logically collective on Vec 947c6ae99SBarry Smith 1047c6ae99SBarry Smith Input Parameter: 1147c6ae99SBarry Smith + da - the distributed array 127e57d48aSBarry Smith - vec - the vector, either a vector the same size as one obtained with DMCreateGlobalVector() or DMCreateLocalVector() 1347c6ae99SBarry Smith 1447c6ae99SBarry Smith Output Parameter: 1547c6ae99SBarry Smith . array - the array 1647c6ae99SBarry Smith 1747c6ae99SBarry Smith Notes: 18aa219208SBarry Smith Call DMDAVecRestoreArray() once you have finished accessing the vector entries. 1947c6ae99SBarry Smith 2047c6ae99SBarry Smith In C, the indexing is "backwards" from what expects: array[k][j][i] NOT array[i][j][k]! 2147c6ae99SBarry Smith 227e57d48aSBarry Smith If vec is a local vector (obtained with DMCreateLocalVector() etc) then the ghost point locations are accessible. If it is 237e57d48aSBarry Smith a global vector then the ghost points are not accessible. Of course with the local vector you will have had to do the 2447c6ae99SBarry Smith 257e57d48aSBarry Smith appropriate DMGlobalToLocalBegin() and DMGlobalToLocalEnd() to have correct values in the ghost locations. 2647c6ae99SBarry Smith 27*95452b02SPatrick Sanan Fortran Notes: 28*95452b02SPatrick Sanan From Fortran use DMDAVecGetArrayF90() and pass for the array type PetscScalar,pointer :: array(:,...,:) of the appropriate 29aa219208SBarry Smith dimension. For a DMDA created with a dof of 1 use the dimension of the DMDA, for a DMDA created with a dof greater than 1 use one more than the 30aa219208SBarry Smith dimension of the DMDA. The order of the indices is array(xs:xs+xm-1,ys:ys+ym-1,zs:zs+zm-1) (when dof is 1) otherwise 31bef27881SBarry Smith array(0:dof-1,xs:xs+xm-1,ys:ys+ym-1,zs:zs+zm-1) where the values are obtained from 32af0996ceSBarry Smith DMDAGetCorners() for a global array or DMDAGetGhostCorners() for a local array. Include petsc/finclude/petscdmda.h90 to access this routine. 3347c6ae99SBarry Smith 34596f5af7SJed Brown Due to bugs in the compiler DMDAVecGetArrayF90() does not work with gfortran versions before 4.5 3547c6ae99SBarry Smith 3647c6ae99SBarry Smith Level: intermediate 3747c6ae99SBarry Smith 3847c6ae99SBarry Smith .keywords: distributed array, get, corners, nodes, local indices, coordinates 3947c6ae99SBarry Smith 40aa219208SBarry Smith .seealso: DMDAGetGhostCorners(), DMDAGetCorners(), VecGetArray(), VecRestoreArray(), DMDAVecRestoreArray(), DMDAVecRestoreArrayDOF() 416db82c94SMatthew G Knepley DMDAVecGetArrayDOF() 4247c6ae99SBarry Smith @*/ 437087cfbeSBarry Smith PetscErrorCode DMDAVecGetArray(DM da,Vec vec,void *array) 4447c6ae99SBarry Smith { 4547c6ae99SBarry Smith PetscErrorCode ierr; 4647c6ae99SBarry Smith PetscInt xs,ys,zs,xm,ym,zm,gxs,gys,gzs,gxm,gym,gzm,N,dim,dof; 4747c6ae99SBarry Smith 4847c6ae99SBarry Smith PetscFunctionBegin; 496db82c94SMatthew G Knepley PetscValidHeaderSpecific(da, DM_CLASSID, 1); 506db82c94SMatthew G Knepley PetscValidHeaderSpecific(vec, VEC_CLASSID, 2); 516db82c94SMatthew G Knepley PetscValidPointer(array, 3); 52aa1993deSMatthew G Knepley if (da->defaultSection) { 53aa1993deSMatthew G Knepley ierr = VecGetArray(vec,(PetscScalar**)array);CHKERRQ(ierr); 54aa1993deSMatthew G Knepley PetscFunctionReturn(0); 55aa1993deSMatthew G Knepley } 56aa219208SBarry Smith ierr = DMDAGetCorners(da,&xs,&ys,&zs,&xm,&ym,&zm);CHKERRQ(ierr); 57aa219208SBarry Smith ierr = DMDAGetGhostCorners(da,&gxs,&gys,&gzs,&gxm,&gym,&gzm);CHKERRQ(ierr); 581321219cSEthan Coon ierr = DMDAGetInfo(da,&dim,0,0,0,0,0,0,&dof,0,0,0,0,0);CHKERRQ(ierr); 5947c6ae99SBarry Smith 6047c6ae99SBarry Smith /* Handle case where user passes in global vector as opposed to local */ 6147c6ae99SBarry Smith ierr = VecGetLocalSize(vec,&N);CHKERRQ(ierr); 6247c6ae99SBarry Smith if (N == xm*ym*zm*dof) { 6347c6ae99SBarry Smith gxm = xm; 6447c6ae99SBarry Smith gym = ym; 6547c6ae99SBarry Smith gzm = zm; 6647c6ae99SBarry Smith gxs = xs; 6747c6ae99SBarry Smith gys = ys; 6847c6ae99SBarry Smith gzs = zs; 6930729d88SBarry Smith } else if (N != gxm*gym*gzm*dof) SETERRQ3(PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"Vector local size %D is not compatible with DMDA local sizes %D %D\n",N,xm*ym*zm*dof,gxm*gym*gzm*dof); 7047c6ae99SBarry Smith 7147c6ae99SBarry Smith if (dim == 1) { 7247c6ae99SBarry Smith ierr = VecGetArray1d(vec,gxm*dof,gxs*dof,(PetscScalar**)array);CHKERRQ(ierr); 7347c6ae99SBarry Smith } else if (dim == 2) { 7447c6ae99SBarry Smith ierr = VecGetArray2d(vec,gym,gxm*dof,gys,gxs*dof,(PetscScalar***)array);CHKERRQ(ierr); 7547c6ae99SBarry Smith } else if (dim == 3) { 7647c6ae99SBarry Smith ierr = VecGetArray3d(vec,gzm,gym,gxm*dof,gzs,gys,gxs*dof,(PetscScalar****)array);CHKERRQ(ierr); 7730729d88SBarry Smith } else SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_CORRUPT,"DMDA dimension not 1, 2, or 3, it is %D\n",dim); 7847c6ae99SBarry Smith PetscFunctionReturn(0); 7947c6ae99SBarry Smith } 8047c6ae99SBarry Smith 8147c6ae99SBarry Smith /*@ 82aa219208SBarry Smith DMDAVecRestoreArray - Restores a multiple dimension array obtained with DMDAVecGetArray() 8347c6ae99SBarry Smith 842ddbf755SMatthew G. Knepley Logically collective on Vec 8547c6ae99SBarry Smith 8647c6ae99SBarry Smith Input Parameter: 8747c6ae99SBarry Smith + da - the distributed array 8847c6ae99SBarry Smith . vec - the vector, either a vector the same size as one obtained with 89564755cdSBarry Smith DMCreateGlobalVector() or DMCreateLocalVector() 90e5c84f05SJed Brown - array - the array, non-NULL pointer is zeroed 9147c6ae99SBarry Smith 9247c6ae99SBarry Smith Level: intermediate 9347c6ae99SBarry Smith 94*95452b02SPatrick Sanan Fortran Notes: 95*95452b02SPatrick Sanan From Fortran use DMDAVecRestoreArrayF90() 9647c6ae99SBarry Smith 9747c6ae99SBarry Smith .keywords: distributed array, get, corners, nodes, local indices, coordinates 9847c6ae99SBarry Smith 99aa219208SBarry Smith .seealso: DMDAGetGhostCorners(), DMDAGetCorners(), VecGetArray(), VecRestoreArray(), DMDAVecGetArray() 10047c6ae99SBarry Smith @*/ 1017087cfbeSBarry Smith PetscErrorCode DMDAVecRestoreArray(DM da,Vec vec,void *array) 10247c6ae99SBarry Smith { 10347c6ae99SBarry Smith PetscErrorCode ierr; 10447c6ae99SBarry Smith PetscInt xs,ys,zs,xm,ym,zm,gxs,gys,gzs,gxm,gym,gzm,N,dim,dof; 10547c6ae99SBarry Smith 10647c6ae99SBarry Smith PetscFunctionBegin; 1076db82c94SMatthew G Knepley PetscValidHeaderSpecific(da, DM_CLASSID, 1); 1086db82c94SMatthew G Knepley PetscValidHeaderSpecific(vec, VEC_CLASSID, 2); 1096db82c94SMatthew G Knepley PetscValidPointer(array, 3); 110aa1993deSMatthew G Knepley if (da->defaultSection) { 111aa1993deSMatthew G Knepley ierr = VecRestoreArray(vec,(PetscScalar**)array);CHKERRQ(ierr); 112aa1993deSMatthew G Knepley PetscFunctionReturn(0); 113aa1993deSMatthew G Knepley } 114aa219208SBarry Smith ierr = DMDAGetCorners(da,&xs,&ys,&zs,&xm,&ym,&zm);CHKERRQ(ierr); 115aa219208SBarry Smith ierr = DMDAGetGhostCorners(da,&gxs,&gys,&gzs,&gxm,&gym,&gzm);CHKERRQ(ierr); 1161321219cSEthan Coon ierr = DMDAGetInfo(da,&dim,0,0,0,0,0,0,&dof,0,0,0,0,0);CHKERRQ(ierr); 11747c6ae99SBarry Smith 11847c6ae99SBarry Smith /* Handle case where user passes in global vector as opposed to local */ 11947c6ae99SBarry Smith ierr = VecGetLocalSize(vec,&N);CHKERRQ(ierr); 12047c6ae99SBarry Smith if (N == xm*ym*zm*dof) { 12147c6ae99SBarry Smith gxm = xm; 12247c6ae99SBarry Smith gym = ym; 12347c6ae99SBarry Smith gzm = zm; 12447c6ae99SBarry Smith gxs = xs; 12547c6ae99SBarry Smith gys = ys; 12647c6ae99SBarry Smith gzs = zs; 12730729d88SBarry Smith } else if (N != gxm*gym*gzm*dof) SETERRQ3(PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"Vector local size %D is not compatible with DMDA local sizes %D %D\n",N,xm*ym*zm*dof,gxm*gym*gzm*dof); 12847c6ae99SBarry Smith 12947c6ae99SBarry Smith if (dim == 1) { 13047c6ae99SBarry Smith ierr = VecRestoreArray1d(vec,gxm*dof,gxs*dof,(PetscScalar**)array);CHKERRQ(ierr); 13147c6ae99SBarry Smith } else if (dim == 2) { 13247c6ae99SBarry Smith ierr = VecRestoreArray2d(vec,gym,gxm*dof,gys,gxs*dof,(PetscScalar***)array);CHKERRQ(ierr); 13347c6ae99SBarry Smith } else if (dim == 3) { 13447c6ae99SBarry Smith ierr = VecRestoreArray3d(vec,gzm,gym,gxm*dof,gzs,gys,gxs*dof,(PetscScalar****)array);CHKERRQ(ierr); 13530729d88SBarry Smith } else SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_CORRUPT,"DMDA dimension not 1, 2, or 3, it is %D\n",dim); 13647c6ae99SBarry Smith PetscFunctionReturn(0); 13747c6ae99SBarry Smith } 13847c6ae99SBarry Smith 13947c6ae99SBarry Smith /*@C 140aa219208SBarry Smith DMDAVecGetArrayDOF - Returns a multiple dimension array that shares data with 14147c6ae99SBarry Smith the underlying vector and is indexed using the global dimensions. 14247c6ae99SBarry Smith 1432ddbf755SMatthew G. Knepley Logically collective 14447c6ae99SBarry Smith 14547c6ae99SBarry Smith Input Parameter: 14647c6ae99SBarry Smith + da - the distributed array 14747c6ae99SBarry Smith - vec - the vector, either a vector the same size as one obtained with 148564755cdSBarry Smith DMCreateGlobalVector() or DMCreateLocalVector() 14947c6ae99SBarry Smith 15047c6ae99SBarry Smith Output Parameter: 15147c6ae99SBarry Smith . array - the array 15247c6ae99SBarry Smith 15347c6ae99SBarry Smith Notes: 154aa219208SBarry Smith Call DMDAVecRestoreArrayDOF() once you have finished accessing the vector entries. 15547c6ae99SBarry Smith 15647c6ae99SBarry Smith In C, the indexing is "backwards" from what expects: array[k][j][i][DOF] NOT array[i][j][k][DOF]! 15747c6ae99SBarry Smith 1581b82215eSBarry Smith In Fortran 90 you do not need a version of DMDAVecRestoreArrayDOF() just use DMDAVecRestoreArrayF90() and declare your array with one higher dimension, 1591b82215eSBarry Smith see src/dm/examples/tutorials/ex11f90.F 1601b82215eSBarry Smith 16147c6ae99SBarry Smith Level: intermediate 16247c6ae99SBarry Smith 16347c6ae99SBarry Smith .keywords: distributed array, get, corners, nodes, local indices, coordinates 16447c6ae99SBarry Smith 165aa219208SBarry Smith .seealso: DMDAGetGhostCorners(), DMDAGetCorners(), VecGetArray(), VecRestoreArray(), DMDAVecRestoreArray(), DMDAVecGetArray(), DMDAVecRestoreArrayDOF() 16647c6ae99SBarry Smith @*/ 1677087cfbeSBarry Smith PetscErrorCode DMDAVecGetArrayDOF(DM da,Vec vec,void *array) 16847c6ae99SBarry Smith { 16947c6ae99SBarry Smith PetscErrorCode ierr; 17047c6ae99SBarry Smith PetscInt xs,ys,zs,xm,ym,zm,gxs,gys,gzs,gxm,gym,gzm,N,dim,dof; 17147c6ae99SBarry Smith 17247c6ae99SBarry Smith PetscFunctionBegin; 173aa219208SBarry Smith ierr = DMDAGetCorners(da,&xs,&ys,&zs,&xm,&ym,&zm);CHKERRQ(ierr); 174aa219208SBarry Smith ierr = DMDAGetGhostCorners(da,&gxs,&gys,&gzs,&gxm,&gym,&gzm);CHKERRQ(ierr); 1751321219cSEthan Coon ierr = DMDAGetInfo(da,&dim,0,0,0,0,0,0,&dof,0,0,0,0,0);CHKERRQ(ierr); 17647c6ae99SBarry Smith 17747c6ae99SBarry Smith /* Handle case where user passes in global vector as opposed to local */ 17847c6ae99SBarry Smith ierr = VecGetLocalSize(vec,&N);CHKERRQ(ierr); 17947c6ae99SBarry Smith if (N == xm*ym*zm*dof) { 18047c6ae99SBarry Smith gxm = xm; 18147c6ae99SBarry Smith gym = ym; 18247c6ae99SBarry Smith gzm = zm; 18347c6ae99SBarry Smith gxs = xs; 18447c6ae99SBarry Smith gys = ys; 18547c6ae99SBarry Smith gzs = zs; 18630729d88SBarry Smith } else if (N != gxm*gym*gzm*dof) SETERRQ3(PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"Vector local size %D is not compatible with DMDA local sizes %D %D\n",N,xm*ym*zm*dof,gxm*gym*gzm*dof); 18747c6ae99SBarry Smith 18847c6ae99SBarry Smith if (dim == 1) { 18947c6ae99SBarry Smith ierr = VecGetArray2d(vec,gxm,dof,gxs,0,(PetscScalar***)array);CHKERRQ(ierr); 19047c6ae99SBarry Smith } else if (dim == 2) { 19147c6ae99SBarry Smith ierr = VecGetArray3d(vec,gym,gxm,dof,gys,gxs,0,(PetscScalar****)array);CHKERRQ(ierr); 19247c6ae99SBarry Smith } else if (dim == 3) { 19347c6ae99SBarry Smith ierr = VecGetArray4d(vec,gzm,gym,gxm,dof,gzs,gys,gxs,0,(PetscScalar*****)array);CHKERRQ(ierr); 19430729d88SBarry Smith } else SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_CORRUPT,"DMDA dimension not 1, 2, or 3, it is %D\n",dim); 19547c6ae99SBarry Smith PetscFunctionReturn(0); 19647c6ae99SBarry Smith } 19747c6ae99SBarry Smith 19847c6ae99SBarry Smith /*@ 199aa219208SBarry Smith DMDAVecRestoreArrayDOF - Restores a multiple dimension array obtained with DMDAVecGetArrayDOF() 20047c6ae99SBarry Smith 2012ddbf755SMatthew G. Knepley Logically collective 20247c6ae99SBarry Smith 20347c6ae99SBarry Smith Input Parameter: 20447c6ae99SBarry Smith + da - the distributed array 20547c6ae99SBarry Smith . vec - the vector, either a vector the same size as one obtained with 206564755cdSBarry Smith DMCreateGlobalVector() or DMCreateLocalVector() 20747c6ae99SBarry Smith - array - the array 20847c6ae99SBarry Smith 20947c6ae99SBarry Smith Level: intermediate 21047c6ae99SBarry Smith 21147c6ae99SBarry Smith .keywords: distributed array, get, corners, nodes, local indices, coordinates 21247c6ae99SBarry Smith 213aa219208SBarry Smith .seealso: DMDAGetGhostCorners(), DMDAGetCorners(), VecGetArray(), VecRestoreArray(), DMDAVecGetArray(), DMDAVecGetArrayDOF(), DMDAVecRestoreArrayDOF() 21447c6ae99SBarry Smith @*/ 2157087cfbeSBarry Smith PetscErrorCode DMDAVecRestoreArrayDOF(DM da,Vec vec,void *array) 21647c6ae99SBarry Smith { 21747c6ae99SBarry Smith PetscErrorCode ierr; 21847c6ae99SBarry Smith PetscInt xs,ys,zs,xm,ym,zm,gxs,gys,gzs,gxm,gym,gzm,N,dim,dof; 21947c6ae99SBarry Smith 22047c6ae99SBarry Smith PetscFunctionBegin; 221aa219208SBarry Smith ierr = DMDAGetCorners(da,&xs,&ys,&zs,&xm,&ym,&zm);CHKERRQ(ierr); 222aa219208SBarry Smith ierr = DMDAGetGhostCorners(da,&gxs,&gys,&gzs,&gxm,&gym,&gzm);CHKERRQ(ierr); 2231321219cSEthan Coon ierr = DMDAGetInfo(da,&dim,0,0,0,0,0,0,&dof,0,0,0,0,0);CHKERRQ(ierr); 22447c6ae99SBarry Smith 22547c6ae99SBarry Smith /* Handle case where user passes in global vector as opposed to local */ 22647c6ae99SBarry Smith ierr = VecGetLocalSize(vec,&N);CHKERRQ(ierr); 22747c6ae99SBarry Smith if (N == xm*ym*zm*dof) { 22847c6ae99SBarry Smith gxm = xm; 22947c6ae99SBarry Smith gym = ym; 23047c6ae99SBarry Smith gzm = zm; 23147c6ae99SBarry Smith gxs = xs; 23247c6ae99SBarry Smith gys = ys; 23347c6ae99SBarry Smith gzs = zs; 23447c6ae99SBarry Smith } 23547c6ae99SBarry Smith 23647c6ae99SBarry Smith if (dim == 1) { 23747c6ae99SBarry Smith ierr = VecRestoreArray2d(vec,gxm,dof,gxs,0,(PetscScalar***)array);CHKERRQ(ierr); 23847c6ae99SBarry Smith } else if (dim == 2) { 23947c6ae99SBarry Smith ierr = VecRestoreArray3d(vec,gym,gxm,dof,gys,gxs,0,(PetscScalar****)array);CHKERRQ(ierr); 24047c6ae99SBarry Smith } else if (dim == 3) { 24147c6ae99SBarry Smith ierr = VecRestoreArray4d(vec,gzm,gym,gxm,dof,gzs,gys,gxs,0,(PetscScalar*****)array);CHKERRQ(ierr); 24230729d88SBarry Smith } else SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_CORRUPT,"DMDA dimension not 1, 2, or 3, it is %D\n",dim); 24347c6ae99SBarry Smith PetscFunctionReturn(0); 24447c6ae99SBarry Smith } 24547c6ae99SBarry Smith 2465edff71fSBarry Smith /*@C 2475edff71fSBarry Smith DMDAVecGetArrayRead - Returns a multiple dimension array that shares data with 2485edff71fSBarry Smith the underlying vector and is indexed using the global dimensions. 2495edff71fSBarry Smith 2502ddbf755SMatthew G. Knepley Not collective 2515edff71fSBarry Smith 2525edff71fSBarry Smith Input Parameter: 2535edff71fSBarry Smith + da - the distributed array 2545edff71fSBarry Smith - vec - the vector, either a vector the same size as one obtained with DMCreateGlobalVector() or DMCreateLocalVector() 2555edff71fSBarry Smith 2565edff71fSBarry Smith Output Parameter: 2575edff71fSBarry Smith . array - the array 2585edff71fSBarry Smith 2595edff71fSBarry Smith Notes: 2605edff71fSBarry Smith Call DMDAVecRestoreArrayRead() once you have finished accessing the vector entries. 2615edff71fSBarry Smith 2625edff71fSBarry Smith In C, the indexing is "backwards" from what expects: array[k][j][i] NOT array[i][j][k]! 2635edff71fSBarry Smith 2645edff71fSBarry Smith If vec is a local vector (obtained with DMCreateLocalVector() etc) then the ghost point locations are accessible. If it is 2655edff71fSBarry Smith a global vector then the ghost points are not accessible. Of course with the local vector you will have had to do the 2665edff71fSBarry Smith 2675edff71fSBarry Smith appropriate DMGlobalToLocalBegin() and DMGlobalToLocalEnd() to have correct values in the ghost locations. 2685edff71fSBarry Smith 269*95452b02SPatrick Sanan Fortran Notes: 270*95452b02SPatrick Sanan From Fortran use DMDAVecGetArrayReadF90() and pass for the array type PetscScalar,pointer :: array(:,...,:) of the appropriate 2715edff71fSBarry Smith dimension. For a DMDA created with a dof of 1 use the dimension of the DMDA, for a DMDA created with a dof greater than 1 use one more than the 2725edff71fSBarry Smith dimension of the DMDA. The order of the indices is array(xs:xs+xm-1,ys:ys+ym-1,zs:zs+zm-1) (when dof is 1) otherwise 2735edff71fSBarry Smith array(0:dof-1,xs:xs+xm-1,ys:ys+ym-1,zs:zs+zm-1) where the values are obtained from 274af0996ceSBarry Smith DMDAGetCorners() for a global array or DMDAGetGhostCorners() for a local array. Include petsc/finclude/petscdmda.h90 to access this routine. 2755edff71fSBarry Smith 2764ebdaf59SBarry Smith Due to bugs in the compiler DMDAVecGetArrayReadF90() does not work with gfortran versions before 4.5 2775edff71fSBarry Smith 2785edff71fSBarry Smith Level: intermediate 2795edff71fSBarry Smith 2805edff71fSBarry Smith .keywords: distributed array, get, corners, nodes, local indices, coordinates 2815edff71fSBarry Smith 2825edff71fSBarry Smith .seealso: DMDAGetGhostCorners(), DMDAGetCorners(), VecGetArray(), VecRestoreArray(), DMDAVecRestoreArray(), DMDAVecRestoreArrayDOF() 2835edff71fSBarry Smith DMDAVecGetArrayDOF() 2845edff71fSBarry Smith @*/ 2855edff71fSBarry Smith PetscErrorCode DMDAVecGetArrayRead(DM da,Vec vec,void *array) 2865edff71fSBarry Smith { 2875edff71fSBarry Smith PetscErrorCode ierr; 2885edff71fSBarry Smith PetscInt xs,ys,zs,xm,ym,zm,gxs,gys,gzs,gxm,gym,gzm,N,dim,dof; 2895edff71fSBarry Smith 2905edff71fSBarry Smith PetscFunctionBegin; 2915edff71fSBarry Smith PetscValidHeaderSpecific(da, DM_CLASSID, 1); 2925edff71fSBarry Smith PetscValidHeaderSpecific(vec, VEC_CLASSID, 2); 2935edff71fSBarry Smith PetscValidPointer(array, 3); 2945edff71fSBarry Smith if (da->defaultSection) { 2955edff71fSBarry Smith ierr = VecGetArrayRead(vec,(const PetscScalar**)array);CHKERRQ(ierr); 2965edff71fSBarry Smith PetscFunctionReturn(0); 2975edff71fSBarry Smith } 2985edff71fSBarry Smith ierr = DMDAGetCorners(da,&xs,&ys,&zs,&xm,&ym,&zm);CHKERRQ(ierr); 2995edff71fSBarry Smith ierr = DMDAGetGhostCorners(da,&gxs,&gys,&gzs,&gxm,&gym,&gzm);CHKERRQ(ierr); 3005edff71fSBarry Smith ierr = DMDAGetInfo(da,&dim,0,0,0,0,0,0,&dof,0,0,0,0,0);CHKERRQ(ierr); 3015edff71fSBarry Smith 3025edff71fSBarry Smith /* Handle case where user passes in global vector as opposed to local */ 3035edff71fSBarry Smith ierr = VecGetLocalSize(vec,&N);CHKERRQ(ierr); 3045edff71fSBarry Smith if (N == xm*ym*zm*dof) { 3055edff71fSBarry Smith gxm = xm; 3065edff71fSBarry Smith gym = ym; 3075edff71fSBarry Smith gzm = zm; 3085edff71fSBarry Smith gxs = xs; 3095edff71fSBarry Smith gys = ys; 3105edff71fSBarry Smith gzs = zs; 3115edff71fSBarry Smith } else if (N != gxm*gym*gzm*dof) SETERRQ3(PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"Vector local size %D is not compatible with DMDA local sizes %D %D\n",N,xm*ym*zm*dof,gxm*gym*gzm*dof); 3125edff71fSBarry Smith 3135edff71fSBarry Smith if (dim == 1) { 3145edff71fSBarry Smith ierr = VecGetArray1dRead(vec,gxm*dof,gxs*dof,(PetscScalar**)array);CHKERRQ(ierr); 3155edff71fSBarry Smith } else if (dim == 2) { 3165edff71fSBarry Smith ierr = VecGetArray2dRead(vec,gym,gxm*dof,gys,gxs*dof,(PetscScalar***)array);CHKERRQ(ierr); 3175edff71fSBarry Smith } else if (dim == 3) { 3185edff71fSBarry Smith ierr = VecGetArray3dRead(vec,gzm,gym,gxm*dof,gzs,gys,gxs*dof,(PetscScalar****)array);CHKERRQ(ierr); 3195edff71fSBarry Smith } else SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_CORRUPT,"DMDA dimension not 1, 2, or 3, it is %D\n",dim); 3205edff71fSBarry Smith PetscFunctionReturn(0); 3215edff71fSBarry Smith } 3225edff71fSBarry Smith 3235edff71fSBarry Smith /*@ 3245edff71fSBarry Smith DMDAVecRestoreArrayRead - Restores a multiple dimension array obtained with DMDAVecGetArrayRead() 3255edff71fSBarry Smith 3262ddbf755SMatthew G. Knepley Not collective 3275edff71fSBarry Smith 3285edff71fSBarry Smith Input Parameter: 3295edff71fSBarry Smith + da - the distributed array 3305edff71fSBarry Smith . vec - the vector, either a vector the same size as one obtained with 3315edff71fSBarry Smith DMCreateGlobalVector() or DMCreateLocalVector() 3325edff71fSBarry Smith - array - the array, non-NULL pointer is zeroed 3335edff71fSBarry Smith 3345edff71fSBarry Smith Level: intermediate 3355edff71fSBarry Smith 336*95452b02SPatrick Sanan Fortran Notes: 337*95452b02SPatrick Sanan From Fortran use DMDAVecRestoreArrayReadF90() 3385edff71fSBarry Smith 3395edff71fSBarry Smith .keywords: distributed array, get, corners, nodes, local indices, coordinates 3405edff71fSBarry Smith 3415edff71fSBarry Smith .seealso: DMDAGetGhostCorners(), DMDAGetCorners(), VecGetArray(), VecRestoreArray(), DMDAVecGetArray() 3425edff71fSBarry Smith @*/ 3435edff71fSBarry Smith PetscErrorCode DMDAVecRestoreArrayRead(DM da,Vec vec,void *array) 3445edff71fSBarry Smith { 3455edff71fSBarry Smith PetscErrorCode ierr; 3465edff71fSBarry Smith PetscInt xs,ys,zs,xm,ym,zm,gxs,gys,gzs,gxm,gym,gzm,N,dim,dof; 3475edff71fSBarry Smith 3485edff71fSBarry Smith PetscFunctionBegin; 3495edff71fSBarry Smith PetscValidHeaderSpecific(da, DM_CLASSID, 1); 3505edff71fSBarry Smith PetscValidHeaderSpecific(vec, VEC_CLASSID, 2); 3515edff71fSBarry Smith PetscValidPointer(array, 3); 3525edff71fSBarry Smith if (da->defaultSection) { 3535edff71fSBarry Smith ierr = VecRestoreArrayRead(vec,(const PetscScalar**)array);CHKERRQ(ierr); 3545edff71fSBarry Smith PetscFunctionReturn(0); 3555edff71fSBarry Smith } 3565edff71fSBarry Smith ierr = DMDAGetCorners(da,&xs,&ys,&zs,&xm,&ym,&zm);CHKERRQ(ierr); 3575edff71fSBarry Smith ierr = DMDAGetGhostCorners(da,&gxs,&gys,&gzs,&gxm,&gym,&gzm);CHKERRQ(ierr); 3585edff71fSBarry Smith ierr = DMDAGetInfo(da,&dim,0,0,0,0,0,0,&dof,0,0,0,0,0);CHKERRQ(ierr); 3595edff71fSBarry Smith 3605edff71fSBarry Smith /* Handle case where user passes in global vector as opposed to local */ 3615edff71fSBarry Smith ierr = VecGetLocalSize(vec,&N);CHKERRQ(ierr); 3625edff71fSBarry Smith if (N == xm*ym*zm*dof) { 3635edff71fSBarry Smith gxm = xm; 3645edff71fSBarry Smith gym = ym; 3655edff71fSBarry Smith gzm = zm; 3665edff71fSBarry Smith gxs = xs; 3675edff71fSBarry Smith gys = ys; 3685edff71fSBarry Smith gzs = zs; 3695edff71fSBarry Smith } else if (N != gxm*gym*gzm*dof) SETERRQ3(PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"Vector local size %D is not compatible with DMDA local sizes %D %D\n",N,xm*ym*zm*dof,gxm*gym*gzm*dof); 3705edff71fSBarry Smith 3715edff71fSBarry Smith if (dim == 1) { 3725edff71fSBarry Smith ierr = VecRestoreArray1dRead(vec,gxm*dof,gxs*dof,(PetscScalar**)array);CHKERRQ(ierr); 3735edff71fSBarry Smith } else if (dim == 2) { 3745edff71fSBarry Smith ierr = VecRestoreArray2dRead(vec,gym,gxm*dof,gys,gxs*dof,(PetscScalar***)array);CHKERRQ(ierr); 3755edff71fSBarry Smith } else if (dim == 3) { 3765edff71fSBarry Smith ierr = VecRestoreArray3dRead(vec,gzm,gym,gxm*dof,gzs,gys,gxs*dof,(PetscScalar****)array);CHKERRQ(ierr); 3775edff71fSBarry Smith } else SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_CORRUPT,"DMDA dimension not 1, 2, or 3, it is %D\n",dim); 3785edff71fSBarry Smith PetscFunctionReturn(0); 3795edff71fSBarry Smith } 3805edff71fSBarry Smith 3815edff71fSBarry Smith /*@C 3825edff71fSBarry Smith DMDAVecGetArrayDOFRead - Returns a multiple dimension array that shares data with 3835edff71fSBarry Smith the underlying vector and is indexed using the global dimensions. 3845edff71fSBarry Smith 3855edff71fSBarry Smith Not Collective 3865edff71fSBarry Smith 3875edff71fSBarry Smith Input Parameter: 3885edff71fSBarry Smith + da - the distributed array 3895edff71fSBarry Smith - vec - the vector, either a vector the same size as one obtained with 3905edff71fSBarry Smith DMCreateGlobalVector() or DMCreateLocalVector() 3915edff71fSBarry Smith 3925edff71fSBarry Smith Output Parameter: 3935edff71fSBarry Smith . array - the array 3945edff71fSBarry Smith 3955edff71fSBarry Smith Notes: 3965edff71fSBarry Smith Call DMDAVecRestoreArrayDOFRead() once you have finished accessing the vector entries. 3975edff71fSBarry Smith 3985edff71fSBarry Smith In C, the indexing is "backwards" from what expects: array[k][j][i][DOF] NOT array[i][j][k][DOF]! 3995edff71fSBarry Smith 4004ebdaf59SBarry Smith In Fortran 90 you do not need a version of DMDAVecRestoreArrayDOF() just use DMDAVecRestoreArrayReadF90() and declare your array with one higher dimension, 4015edff71fSBarry Smith see src/dm/examples/tutorials/ex11f90.F 4025edff71fSBarry Smith 4035edff71fSBarry Smith Level: intermediate 4045edff71fSBarry Smith 4055edff71fSBarry Smith .keywords: distributed array, get, corners, nodes, local indices, coordinates 4065edff71fSBarry Smith 4075edff71fSBarry Smith .seealso: DMDAGetGhostCorners(), DMDAGetCorners(), VecGetArray(), VecRestoreArray(), DMDAVecRestoreArray(), DMDAVecGetArray(), DMDAVecRestoreArrayDOF() 4085edff71fSBarry Smith @*/ 4095edff71fSBarry Smith PetscErrorCode DMDAVecGetArrayDOFRead(DM da,Vec vec,void *array) 4105edff71fSBarry Smith { 4115edff71fSBarry Smith PetscErrorCode ierr; 4125edff71fSBarry Smith PetscInt xs,ys,zs,xm,ym,zm,gxs,gys,gzs,gxm,gym,gzm,N,dim,dof; 4135edff71fSBarry Smith 4145edff71fSBarry Smith PetscFunctionBegin; 4155edff71fSBarry Smith ierr = DMDAGetCorners(da,&xs,&ys,&zs,&xm,&ym,&zm);CHKERRQ(ierr); 4165edff71fSBarry Smith ierr = DMDAGetGhostCorners(da,&gxs,&gys,&gzs,&gxm,&gym,&gzm);CHKERRQ(ierr); 4175edff71fSBarry Smith ierr = DMDAGetInfo(da,&dim,0,0,0,0,0,0,&dof,0,0,0,0,0);CHKERRQ(ierr); 4185edff71fSBarry Smith 4195edff71fSBarry Smith /* Handle case where user passes in global vector as opposed to local */ 4205edff71fSBarry Smith ierr = VecGetLocalSize(vec,&N);CHKERRQ(ierr); 4215edff71fSBarry Smith if (N == xm*ym*zm*dof) { 4225edff71fSBarry Smith gxm = xm; 4235edff71fSBarry Smith gym = ym; 4245edff71fSBarry Smith gzm = zm; 4255edff71fSBarry Smith gxs = xs; 4265edff71fSBarry Smith gys = ys; 4275edff71fSBarry Smith gzs = zs; 4285edff71fSBarry Smith } else if (N != gxm*gym*gzm*dof) SETERRQ3(PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"Vector local size %D is not compatible with DMDA local sizes %D %D\n",N,xm*ym*zm*dof,gxm*gym*gzm*dof); 4295edff71fSBarry Smith 4305edff71fSBarry Smith if (dim == 1) { 4315edff71fSBarry Smith ierr = VecGetArray2dRead(vec,gxm,dof,gxs,0,(PetscScalar***)array);CHKERRQ(ierr); 4325edff71fSBarry Smith } else if (dim == 2) { 4335edff71fSBarry Smith ierr = VecGetArray3dRead(vec,gym,gxm,dof,gys,gxs,0,(PetscScalar****)array);CHKERRQ(ierr); 4345edff71fSBarry Smith } else if (dim == 3) { 4355edff71fSBarry Smith ierr = VecGetArray4dRead(vec,gzm,gym,gxm,dof,gzs,gys,gxs,0,(PetscScalar*****)array);CHKERRQ(ierr); 4365edff71fSBarry Smith } else SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_CORRUPT,"DMDA dimension not 1, 2, or 3, it is %D\n",dim); 4375edff71fSBarry Smith PetscFunctionReturn(0); 4385edff71fSBarry Smith } 4395edff71fSBarry Smith 4405edff71fSBarry Smith /*@ 4415edff71fSBarry Smith DMDAVecRestoreArrayDOFRead - Restores a multiple dimension array obtained with DMDAVecGetArrayDOFRead() 4425edff71fSBarry Smith 4435edff71fSBarry Smith Not Collective 4445edff71fSBarry Smith 4455edff71fSBarry Smith Input Parameter: 4465edff71fSBarry Smith + da - the distributed array 4475edff71fSBarry Smith . vec - the vector, either a vector the same size as one obtained with 4485edff71fSBarry Smith DMCreateGlobalVector() or DMCreateLocalVector() 4495edff71fSBarry Smith - array - the array 4505edff71fSBarry Smith 4515edff71fSBarry Smith Level: intermediate 4525edff71fSBarry Smith 4535edff71fSBarry Smith .keywords: distributed array, get, corners, nodes, local indices, coordinates 4545edff71fSBarry Smith 4555edff71fSBarry Smith .seealso: DMDAGetGhostCorners(), DMDAGetCorners(), VecGetArray(), VecRestoreArray(), DMDAVecGetArray(), DMDAVecGetArrayDOF(), DMDAVecRestoreArrayDOF() 4565edff71fSBarry Smith @*/ 4575edff71fSBarry Smith PetscErrorCode DMDAVecRestoreArrayDOFRead(DM da,Vec vec,void *array) 4585edff71fSBarry Smith { 4595edff71fSBarry Smith PetscErrorCode ierr; 4605edff71fSBarry Smith PetscInt xs,ys,zs,xm,ym,zm,gxs,gys,gzs,gxm,gym,gzm,N,dim,dof; 4615edff71fSBarry Smith 4625edff71fSBarry Smith PetscFunctionBegin; 4635edff71fSBarry Smith ierr = DMDAGetCorners(da,&xs,&ys,&zs,&xm,&ym,&zm);CHKERRQ(ierr); 4645edff71fSBarry Smith ierr = DMDAGetGhostCorners(da,&gxs,&gys,&gzs,&gxm,&gym,&gzm);CHKERRQ(ierr); 4655edff71fSBarry Smith ierr = DMDAGetInfo(da,&dim,0,0,0,0,0,0,&dof,0,0,0,0,0);CHKERRQ(ierr); 4665edff71fSBarry Smith 4675edff71fSBarry Smith /* Handle case where user passes in global vector as opposed to local */ 4685edff71fSBarry Smith ierr = VecGetLocalSize(vec,&N);CHKERRQ(ierr); 4695edff71fSBarry Smith if (N == xm*ym*zm*dof) { 4705edff71fSBarry Smith gxm = xm; 4715edff71fSBarry Smith gym = ym; 4725edff71fSBarry Smith gzm = zm; 4735edff71fSBarry Smith gxs = xs; 4745edff71fSBarry Smith gys = ys; 4755edff71fSBarry Smith gzs = zs; 4765edff71fSBarry Smith } 4775edff71fSBarry Smith 4785edff71fSBarry Smith if (dim == 1) { 4795edff71fSBarry Smith ierr = VecRestoreArray2dRead(vec,gxm,dof,gxs,0,(PetscScalar***)array);CHKERRQ(ierr); 4805edff71fSBarry Smith } else if (dim == 2) { 4815edff71fSBarry Smith ierr = VecRestoreArray3dRead(vec,gym,gxm,dof,gys,gxs,0,(PetscScalar****)array);CHKERRQ(ierr); 4825edff71fSBarry Smith } else if (dim == 3) { 4835edff71fSBarry Smith ierr = VecRestoreArray4dRead(vec,gzm,gym,gxm,dof,gzs,gys,gxs,0,(PetscScalar*****)array);CHKERRQ(ierr); 4845edff71fSBarry Smith } else SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_CORRUPT,"DMDA dimension not 1, 2, or 3, it is %D\n",dim); 4855edff71fSBarry Smith PetscFunctionReturn(0); 4865edff71fSBarry Smith } 4875edff71fSBarry Smith 48847c6ae99SBarry Smith 48947c6ae99SBarry Smith 49047c6ae99SBarry Smith 49147c6ae99SBarry Smith 49247c6ae99SBarry Smith 49347c6ae99SBarry Smith 49447c6ae99SBarry Smith 49547c6ae99SBarry Smith 49647c6ae99SBarry Smith 49747c6ae99SBarry Smith 49847c6ae99SBarry Smith 49947c6ae99SBarry Smith 500