147c6ae99SBarry Smith 2af0996ceSBarry Smith #include <petsc/private/dmdaimpl.h> /*I "petscdmda.h" I*/ 347c6ae99SBarry Smith 447c6ae99SBarry Smith /*@C 5aa219208SBarry Smith DMDAVecGetArray - Returns a multiple dimension array that shares data with 647c6ae99SBarry Smith the underlying vector and is indexed using the global dimensions. 747c6ae99SBarry Smith 8*d083f849SBarry Smith Logically collective on da 947c6ae99SBarry Smith 1047c6ae99SBarry Smith Input Parameter: 1147c6ae99SBarry Smith + da - the distributed array 127e57d48aSBarry Smith - vec - the vector, either a vector the same size as one obtained with DMCreateGlobalVector() or DMCreateLocalVector() 1347c6ae99SBarry Smith 1447c6ae99SBarry Smith Output Parameter: 1547c6ae99SBarry Smith . array - the array 1647c6ae99SBarry Smith 1747c6ae99SBarry Smith Notes: 18aa219208SBarry Smith Call DMDAVecRestoreArray() once you have finished accessing the vector entries. 1947c6ae99SBarry Smith 2047c6ae99SBarry Smith In C, the indexing is "backwards" from what expects: array[k][j][i] NOT array[i][j][k]! 2147c6ae99SBarry Smith 227e57d48aSBarry Smith If vec is a local vector (obtained with DMCreateLocalVector() etc) then the ghost point locations are accessible. If it is 237e57d48aSBarry Smith a global vector then the ghost points are not accessible. Of course with the local vector you will have had to do the 2447c6ae99SBarry Smith 257e57d48aSBarry Smith appropriate DMGlobalToLocalBegin() and DMGlobalToLocalEnd() to have correct values in the ghost locations. 2647c6ae99SBarry Smith 2795452b02SPatrick Sanan Fortran Notes: 2895452b02SPatrick Sanan From Fortran use DMDAVecGetArrayF90() and pass for the array type PetscScalar,pointer :: array(:,...,:) of the appropriate 29aa219208SBarry Smith dimension. For a DMDA created with a dof of 1 use the dimension of the DMDA, for a DMDA created with a dof greater than 1 use one more than the 30aa219208SBarry Smith dimension of the DMDA. The order of the indices is array(xs:xs+xm-1,ys:ys+ym-1,zs:zs+zm-1) (when dof is 1) otherwise 31bef27881SBarry Smith array(0:dof-1,xs:xs+xm-1,ys:ys+ym-1,zs:zs+zm-1) where the values are obtained from 32af0996ceSBarry Smith DMDAGetCorners() for a global array or DMDAGetGhostCorners() for a local array. Include petsc/finclude/petscdmda.h90 to access this routine. 3347c6ae99SBarry Smith 34596f5af7SJed Brown Due to bugs in the compiler DMDAVecGetArrayF90() does not work with gfortran versions before 4.5 3547c6ae99SBarry Smith 3647c6ae99SBarry Smith Level: intermediate 3747c6ae99SBarry Smith 38aa219208SBarry Smith .seealso: DMDAGetGhostCorners(), DMDAGetCorners(), VecGetArray(), VecRestoreArray(), DMDAVecRestoreArray(), DMDAVecRestoreArrayDOF() 396db82c94SMatthew G Knepley DMDAVecGetArrayDOF() 4047c6ae99SBarry Smith @*/ 417087cfbeSBarry Smith PetscErrorCode DMDAVecGetArray(DM da,Vec vec,void *array) 4247c6ae99SBarry Smith { 4347c6ae99SBarry Smith PetscErrorCode ierr; 4447c6ae99SBarry Smith PetscInt xs,ys,zs,xm,ym,zm,gxs,gys,gzs,gxm,gym,gzm,N,dim,dof; 4547c6ae99SBarry Smith 4647c6ae99SBarry Smith PetscFunctionBegin; 47a9a02de4SBarry Smith PetscValidHeaderSpecificType(da, DM_CLASSID, 1,DMDA); 486db82c94SMatthew G Knepley PetscValidHeaderSpecific(vec, VEC_CLASSID, 2); 496db82c94SMatthew G Knepley PetscValidPointer(array, 3); 50aa1993deSMatthew G Knepley if (da->defaultSection) { 51aa1993deSMatthew G Knepley ierr = VecGetArray(vec,(PetscScalar**)array);CHKERRQ(ierr); 52aa1993deSMatthew G Knepley PetscFunctionReturn(0); 53aa1993deSMatthew G Knepley } 54aa219208SBarry Smith ierr = DMDAGetCorners(da,&xs,&ys,&zs,&xm,&ym,&zm);CHKERRQ(ierr); 55aa219208SBarry Smith ierr = DMDAGetGhostCorners(da,&gxs,&gys,&gzs,&gxm,&gym,&gzm);CHKERRQ(ierr); 561321219cSEthan Coon ierr = DMDAGetInfo(da,&dim,0,0,0,0,0,0,&dof,0,0,0,0,0);CHKERRQ(ierr); 5747c6ae99SBarry Smith 5847c6ae99SBarry Smith /* Handle case where user passes in global vector as opposed to local */ 5947c6ae99SBarry Smith ierr = VecGetLocalSize(vec,&N);CHKERRQ(ierr); 6047c6ae99SBarry Smith if (N == xm*ym*zm*dof) { 6147c6ae99SBarry Smith gxm = xm; 6247c6ae99SBarry Smith gym = ym; 6347c6ae99SBarry Smith gzm = zm; 6447c6ae99SBarry Smith gxs = xs; 6547c6ae99SBarry Smith gys = ys; 6647c6ae99SBarry Smith gzs = zs; 6730729d88SBarry Smith } else if (N != gxm*gym*gzm*dof) SETERRQ3(PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"Vector local size %D is not compatible with DMDA local sizes %D %D\n",N,xm*ym*zm*dof,gxm*gym*gzm*dof); 6847c6ae99SBarry Smith 6947c6ae99SBarry Smith if (dim == 1) { 7047c6ae99SBarry Smith ierr = VecGetArray1d(vec,gxm*dof,gxs*dof,(PetscScalar**)array);CHKERRQ(ierr); 7147c6ae99SBarry Smith } else if (dim == 2) { 7247c6ae99SBarry Smith ierr = VecGetArray2d(vec,gym,gxm*dof,gys,gxs*dof,(PetscScalar***)array);CHKERRQ(ierr); 7347c6ae99SBarry Smith } else if (dim == 3) { 7447c6ae99SBarry Smith ierr = VecGetArray3d(vec,gzm,gym,gxm*dof,gzs,gys,gxs*dof,(PetscScalar****)array);CHKERRQ(ierr); 7530729d88SBarry Smith } else SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_CORRUPT,"DMDA dimension not 1, 2, or 3, it is %D\n",dim); 7647c6ae99SBarry Smith PetscFunctionReturn(0); 7747c6ae99SBarry Smith } 7847c6ae99SBarry Smith 7947c6ae99SBarry Smith /*@ 80aa219208SBarry Smith DMDAVecRestoreArray - Restores a multiple dimension array obtained with DMDAVecGetArray() 8147c6ae99SBarry Smith 82*d083f849SBarry Smith Logically collective on da 8347c6ae99SBarry Smith 8447c6ae99SBarry Smith Input Parameter: 8547c6ae99SBarry Smith + da - the distributed array 8647c6ae99SBarry Smith . vec - the vector, either a vector the same size as one obtained with 87564755cdSBarry Smith DMCreateGlobalVector() or DMCreateLocalVector() 88e5c84f05SJed Brown - array - the array, non-NULL pointer is zeroed 8947c6ae99SBarry Smith 9047c6ae99SBarry Smith Level: intermediate 9147c6ae99SBarry Smith 9295452b02SPatrick Sanan Fortran Notes: 9395452b02SPatrick Sanan From Fortran use DMDAVecRestoreArrayF90() 9447c6ae99SBarry Smith 95aa219208SBarry Smith .seealso: DMDAGetGhostCorners(), DMDAGetCorners(), VecGetArray(), VecRestoreArray(), DMDAVecGetArray() 9647c6ae99SBarry Smith @*/ 977087cfbeSBarry Smith PetscErrorCode DMDAVecRestoreArray(DM da,Vec vec,void *array) 9847c6ae99SBarry Smith { 9947c6ae99SBarry Smith PetscErrorCode ierr; 10047c6ae99SBarry Smith PetscInt xs,ys,zs,xm,ym,zm,gxs,gys,gzs,gxm,gym,gzm,N,dim,dof; 10147c6ae99SBarry Smith 10247c6ae99SBarry Smith PetscFunctionBegin; 103a9a02de4SBarry Smith PetscValidHeaderSpecificType(da, DM_CLASSID, 1,DMDA); 1046db82c94SMatthew G Knepley PetscValidHeaderSpecific(vec, VEC_CLASSID, 2); 1056db82c94SMatthew G Knepley PetscValidPointer(array, 3); 106aa1993deSMatthew G Knepley if (da->defaultSection) { 107aa1993deSMatthew G Knepley ierr = VecRestoreArray(vec,(PetscScalar**)array);CHKERRQ(ierr); 108aa1993deSMatthew G Knepley PetscFunctionReturn(0); 109aa1993deSMatthew G Knepley } 110aa219208SBarry Smith ierr = DMDAGetCorners(da,&xs,&ys,&zs,&xm,&ym,&zm);CHKERRQ(ierr); 111aa219208SBarry Smith ierr = DMDAGetGhostCorners(da,&gxs,&gys,&gzs,&gxm,&gym,&gzm);CHKERRQ(ierr); 1121321219cSEthan Coon ierr = DMDAGetInfo(da,&dim,0,0,0,0,0,0,&dof,0,0,0,0,0);CHKERRQ(ierr); 11347c6ae99SBarry Smith 11447c6ae99SBarry Smith /* Handle case where user passes in global vector as opposed to local */ 11547c6ae99SBarry Smith ierr = VecGetLocalSize(vec,&N);CHKERRQ(ierr); 11647c6ae99SBarry Smith if (N == xm*ym*zm*dof) { 11747c6ae99SBarry Smith gxm = xm; 11847c6ae99SBarry Smith gym = ym; 11947c6ae99SBarry Smith gzm = zm; 12047c6ae99SBarry Smith gxs = xs; 12147c6ae99SBarry Smith gys = ys; 12247c6ae99SBarry Smith gzs = zs; 12330729d88SBarry Smith } else if (N != gxm*gym*gzm*dof) SETERRQ3(PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"Vector local size %D is not compatible with DMDA local sizes %D %D\n",N,xm*ym*zm*dof,gxm*gym*gzm*dof); 12447c6ae99SBarry Smith 12547c6ae99SBarry Smith if (dim == 1) { 12647c6ae99SBarry Smith ierr = VecRestoreArray1d(vec,gxm*dof,gxs*dof,(PetscScalar**)array);CHKERRQ(ierr); 12747c6ae99SBarry Smith } else if (dim == 2) { 12847c6ae99SBarry Smith ierr = VecRestoreArray2d(vec,gym,gxm*dof,gys,gxs*dof,(PetscScalar***)array);CHKERRQ(ierr); 12947c6ae99SBarry Smith } else if (dim == 3) { 13047c6ae99SBarry Smith ierr = VecRestoreArray3d(vec,gzm,gym,gxm*dof,gzs,gys,gxs*dof,(PetscScalar****)array);CHKERRQ(ierr); 13130729d88SBarry Smith } else SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_CORRUPT,"DMDA dimension not 1, 2, or 3, it is %D\n",dim); 13247c6ae99SBarry Smith PetscFunctionReturn(0); 13347c6ae99SBarry Smith } 13447c6ae99SBarry Smith 13547c6ae99SBarry Smith /*@C 136aa219208SBarry Smith DMDAVecGetArrayDOF - Returns a multiple dimension array that shares data with 13747c6ae99SBarry Smith the underlying vector and is indexed using the global dimensions. 13847c6ae99SBarry Smith 1392ddbf755SMatthew G. Knepley Logically collective 14047c6ae99SBarry Smith 14147c6ae99SBarry Smith Input Parameter: 14247c6ae99SBarry Smith + da - the distributed array 14347c6ae99SBarry Smith - vec - the vector, either a vector the same size as one obtained with 144564755cdSBarry Smith DMCreateGlobalVector() or DMCreateLocalVector() 14547c6ae99SBarry Smith 14647c6ae99SBarry Smith Output Parameter: 14747c6ae99SBarry Smith . array - the array 14847c6ae99SBarry Smith 14947c6ae99SBarry Smith Notes: 150aa219208SBarry Smith Call DMDAVecRestoreArrayDOF() once you have finished accessing the vector entries. 15147c6ae99SBarry Smith 15247c6ae99SBarry Smith In C, the indexing is "backwards" from what expects: array[k][j][i][DOF] NOT array[i][j][k][DOF]! 15347c6ae99SBarry Smith 1541b82215eSBarry Smith In Fortran 90 you do not need a version of DMDAVecRestoreArrayDOF() just use DMDAVecRestoreArrayF90() and declare your array with one higher dimension, 1551b82215eSBarry Smith see src/dm/examples/tutorials/ex11f90.F 1561b82215eSBarry Smith 15747c6ae99SBarry Smith Level: intermediate 15847c6ae99SBarry Smith 159aa219208SBarry Smith .seealso: DMDAGetGhostCorners(), DMDAGetCorners(), VecGetArray(), VecRestoreArray(), DMDAVecRestoreArray(), DMDAVecGetArray(), DMDAVecRestoreArrayDOF() 16047c6ae99SBarry Smith @*/ 1617087cfbeSBarry Smith PetscErrorCode DMDAVecGetArrayDOF(DM da,Vec vec,void *array) 16247c6ae99SBarry Smith { 16347c6ae99SBarry Smith PetscErrorCode ierr; 16447c6ae99SBarry Smith PetscInt xs,ys,zs,xm,ym,zm,gxs,gys,gzs,gxm,gym,gzm,N,dim,dof; 16547c6ae99SBarry Smith 16647c6ae99SBarry Smith PetscFunctionBegin; 167aa219208SBarry Smith ierr = DMDAGetCorners(da,&xs,&ys,&zs,&xm,&ym,&zm);CHKERRQ(ierr); 168aa219208SBarry Smith ierr = DMDAGetGhostCorners(da,&gxs,&gys,&gzs,&gxm,&gym,&gzm);CHKERRQ(ierr); 1691321219cSEthan Coon ierr = DMDAGetInfo(da,&dim,0,0,0,0,0,0,&dof,0,0,0,0,0);CHKERRQ(ierr); 17047c6ae99SBarry Smith 17147c6ae99SBarry Smith /* Handle case where user passes in global vector as opposed to local */ 17247c6ae99SBarry Smith ierr = VecGetLocalSize(vec,&N);CHKERRQ(ierr); 17347c6ae99SBarry Smith if (N == xm*ym*zm*dof) { 17447c6ae99SBarry Smith gxm = xm; 17547c6ae99SBarry Smith gym = ym; 17647c6ae99SBarry Smith gzm = zm; 17747c6ae99SBarry Smith gxs = xs; 17847c6ae99SBarry Smith gys = ys; 17947c6ae99SBarry Smith gzs = zs; 18030729d88SBarry Smith } else if (N != gxm*gym*gzm*dof) SETERRQ3(PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"Vector local size %D is not compatible with DMDA local sizes %D %D\n",N,xm*ym*zm*dof,gxm*gym*gzm*dof); 18147c6ae99SBarry Smith 18247c6ae99SBarry Smith if (dim == 1) { 18347c6ae99SBarry Smith ierr = VecGetArray2d(vec,gxm,dof,gxs,0,(PetscScalar***)array);CHKERRQ(ierr); 18447c6ae99SBarry Smith } else if (dim == 2) { 18547c6ae99SBarry Smith ierr = VecGetArray3d(vec,gym,gxm,dof,gys,gxs,0,(PetscScalar****)array);CHKERRQ(ierr); 18647c6ae99SBarry Smith } else if (dim == 3) { 18747c6ae99SBarry Smith ierr = VecGetArray4d(vec,gzm,gym,gxm,dof,gzs,gys,gxs,0,(PetscScalar*****)array);CHKERRQ(ierr); 18830729d88SBarry Smith } else SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_CORRUPT,"DMDA dimension not 1, 2, or 3, it is %D\n",dim); 18947c6ae99SBarry Smith PetscFunctionReturn(0); 19047c6ae99SBarry Smith } 19147c6ae99SBarry Smith 19247c6ae99SBarry Smith /*@ 193aa219208SBarry Smith DMDAVecRestoreArrayDOF - Restores a multiple dimension array obtained with DMDAVecGetArrayDOF() 19447c6ae99SBarry Smith 1952ddbf755SMatthew G. Knepley Logically collective 19647c6ae99SBarry Smith 19747c6ae99SBarry Smith Input Parameter: 19847c6ae99SBarry Smith + da - the distributed array 19947c6ae99SBarry Smith . vec - the vector, either a vector the same size as one obtained with 200564755cdSBarry Smith DMCreateGlobalVector() or DMCreateLocalVector() 20147c6ae99SBarry Smith - array - the array 20247c6ae99SBarry Smith 20347c6ae99SBarry Smith Level: intermediate 20447c6ae99SBarry Smith 205aa219208SBarry Smith .seealso: DMDAGetGhostCorners(), DMDAGetCorners(), VecGetArray(), VecRestoreArray(), DMDAVecGetArray(), DMDAVecGetArrayDOF(), DMDAVecRestoreArrayDOF() 20647c6ae99SBarry Smith @*/ 2077087cfbeSBarry Smith PetscErrorCode DMDAVecRestoreArrayDOF(DM da,Vec vec,void *array) 20847c6ae99SBarry Smith { 20947c6ae99SBarry Smith PetscErrorCode ierr; 21047c6ae99SBarry Smith PetscInt xs,ys,zs,xm,ym,zm,gxs,gys,gzs,gxm,gym,gzm,N,dim,dof; 21147c6ae99SBarry Smith 21247c6ae99SBarry Smith PetscFunctionBegin; 213aa219208SBarry Smith ierr = DMDAGetCorners(da,&xs,&ys,&zs,&xm,&ym,&zm);CHKERRQ(ierr); 214aa219208SBarry Smith ierr = DMDAGetGhostCorners(da,&gxs,&gys,&gzs,&gxm,&gym,&gzm);CHKERRQ(ierr); 2151321219cSEthan Coon ierr = DMDAGetInfo(da,&dim,0,0,0,0,0,0,&dof,0,0,0,0,0);CHKERRQ(ierr); 21647c6ae99SBarry Smith 21747c6ae99SBarry Smith /* Handle case where user passes in global vector as opposed to local */ 21847c6ae99SBarry Smith ierr = VecGetLocalSize(vec,&N);CHKERRQ(ierr); 21947c6ae99SBarry Smith if (N == xm*ym*zm*dof) { 22047c6ae99SBarry Smith gxm = xm; 22147c6ae99SBarry Smith gym = ym; 22247c6ae99SBarry Smith gzm = zm; 22347c6ae99SBarry Smith gxs = xs; 22447c6ae99SBarry Smith gys = ys; 22547c6ae99SBarry Smith gzs = zs; 22647c6ae99SBarry Smith } 22747c6ae99SBarry Smith 22847c6ae99SBarry Smith if (dim == 1) { 22947c6ae99SBarry Smith ierr = VecRestoreArray2d(vec,gxm,dof,gxs,0,(PetscScalar***)array);CHKERRQ(ierr); 23047c6ae99SBarry Smith } else if (dim == 2) { 23147c6ae99SBarry Smith ierr = VecRestoreArray3d(vec,gym,gxm,dof,gys,gxs,0,(PetscScalar****)array);CHKERRQ(ierr); 23247c6ae99SBarry Smith } else if (dim == 3) { 23347c6ae99SBarry Smith ierr = VecRestoreArray4d(vec,gzm,gym,gxm,dof,gzs,gys,gxs,0,(PetscScalar*****)array);CHKERRQ(ierr); 23430729d88SBarry Smith } else SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_CORRUPT,"DMDA dimension not 1, 2, or 3, it is %D\n",dim); 23547c6ae99SBarry Smith PetscFunctionReturn(0); 23647c6ae99SBarry Smith } 23747c6ae99SBarry Smith 2385edff71fSBarry Smith /*@C 2395edff71fSBarry Smith DMDAVecGetArrayRead - Returns a multiple dimension array that shares data with 2405edff71fSBarry Smith the underlying vector and is indexed using the global dimensions. 2415edff71fSBarry Smith 2422ddbf755SMatthew G. Knepley Not collective 2435edff71fSBarry Smith 2445edff71fSBarry Smith Input Parameter: 2455edff71fSBarry Smith + da - the distributed array 2465edff71fSBarry Smith - vec - the vector, either a vector the same size as one obtained with DMCreateGlobalVector() or DMCreateLocalVector() 2475edff71fSBarry Smith 2485edff71fSBarry Smith Output Parameter: 2495edff71fSBarry Smith . array - the array 2505edff71fSBarry Smith 2515edff71fSBarry Smith Notes: 2525edff71fSBarry Smith Call DMDAVecRestoreArrayRead() once you have finished accessing the vector entries. 2535edff71fSBarry Smith 2545edff71fSBarry Smith In C, the indexing is "backwards" from what expects: array[k][j][i] NOT array[i][j][k]! 2555edff71fSBarry Smith 2565edff71fSBarry Smith If vec is a local vector (obtained with DMCreateLocalVector() etc) then the ghost point locations are accessible. If it is 2575edff71fSBarry Smith a global vector then the ghost points are not accessible. Of course with the local vector you will have had to do the 2585edff71fSBarry Smith 2595edff71fSBarry Smith appropriate DMGlobalToLocalBegin() and DMGlobalToLocalEnd() to have correct values in the ghost locations. 2605edff71fSBarry Smith 26195452b02SPatrick Sanan Fortran Notes: 26295452b02SPatrick Sanan From Fortran use DMDAVecGetArrayReadF90() and pass for the array type PetscScalar,pointer :: array(:,...,:) of the appropriate 2635edff71fSBarry Smith dimension. For a DMDA created with a dof of 1 use the dimension of the DMDA, for a DMDA created with a dof greater than 1 use one more than the 2645edff71fSBarry Smith dimension of the DMDA. The order of the indices is array(xs:xs+xm-1,ys:ys+ym-1,zs:zs+zm-1) (when dof is 1) otherwise 2655edff71fSBarry Smith array(0:dof-1,xs:xs+xm-1,ys:ys+ym-1,zs:zs+zm-1) where the values are obtained from 266af0996ceSBarry Smith DMDAGetCorners() for a global array or DMDAGetGhostCorners() for a local array. Include petsc/finclude/petscdmda.h90 to access this routine. 2675edff71fSBarry Smith 2684ebdaf59SBarry Smith Due to bugs in the compiler DMDAVecGetArrayReadF90() does not work with gfortran versions before 4.5 2695edff71fSBarry Smith 2705edff71fSBarry Smith Level: intermediate 2715edff71fSBarry Smith 2725edff71fSBarry Smith .seealso: DMDAGetGhostCorners(), DMDAGetCorners(), VecGetArray(), VecRestoreArray(), DMDAVecRestoreArray(), DMDAVecRestoreArrayDOF() 2735edff71fSBarry Smith DMDAVecGetArrayDOF() 2745edff71fSBarry Smith @*/ 2755edff71fSBarry Smith PetscErrorCode DMDAVecGetArrayRead(DM da,Vec vec,void *array) 2765edff71fSBarry Smith { 2775edff71fSBarry Smith PetscErrorCode ierr; 2785edff71fSBarry Smith PetscInt xs,ys,zs,xm,ym,zm,gxs,gys,gzs,gxm,gym,gzm,N,dim,dof; 2795edff71fSBarry Smith 2805edff71fSBarry Smith PetscFunctionBegin; 281a9a02de4SBarry Smith PetscValidHeaderSpecificType(da, DM_CLASSID, 1,DMDA); 2825edff71fSBarry Smith PetscValidHeaderSpecific(vec, VEC_CLASSID, 2); 2835edff71fSBarry Smith PetscValidPointer(array, 3); 2845edff71fSBarry Smith if (da->defaultSection) { 2855edff71fSBarry Smith ierr = VecGetArrayRead(vec,(const PetscScalar**)array);CHKERRQ(ierr); 2865edff71fSBarry Smith PetscFunctionReturn(0); 2875edff71fSBarry Smith } 2885edff71fSBarry Smith ierr = DMDAGetCorners(da,&xs,&ys,&zs,&xm,&ym,&zm);CHKERRQ(ierr); 2895edff71fSBarry Smith ierr = DMDAGetGhostCorners(da,&gxs,&gys,&gzs,&gxm,&gym,&gzm);CHKERRQ(ierr); 2905edff71fSBarry Smith ierr = DMDAGetInfo(da,&dim,0,0,0,0,0,0,&dof,0,0,0,0,0);CHKERRQ(ierr); 2915edff71fSBarry Smith 2925edff71fSBarry Smith /* Handle case where user passes in global vector as opposed to local */ 2935edff71fSBarry Smith ierr = VecGetLocalSize(vec,&N);CHKERRQ(ierr); 2945edff71fSBarry Smith if (N == xm*ym*zm*dof) { 2955edff71fSBarry Smith gxm = xm; 2965edff71fSBarry Smith gym = ym; 2975edff71fSBarry Smith gzm = zm; 2985edff71fSBarry Smith gxs = xs; 2995edff71fSBarry Smith gys = ys; 3005edff71fSBarry Smith gzs = zs; 3015edff71fSBarry Smith } else if (N != gxm*gym*gzm*dof) SETERRQ3(PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"Vector local size %D is not compatible with DMDA local sizes %D %D\n",N,xm*ym*zm*dof,gxm*gym*gzm*dof); 3025edff71fSBarry Smith 3035edff71fSBarry Smith if (dim == 1) { 3045edff71fSBarry Smith ierr = VecGetArray1dRead(vec,gxm*dof,gxs*dof,(PetscScalar**)array);CHKERRQ(ierr); 3055edff71fSBarry Smith } else if (dim == 2) { 3065edff71fSBarry Smith ierr = VecGetArray2dRead(vec,gym,gxm*dof,gys,gxs*dof,(PetscScalar***)array);CHKERRQ(ierr); 3075edff71fSBarry Smith } else if (dim == 3) { 3085edff71fSBarry Smith ierr = VecGetArray3dRead(vec,gzm,gym,gxm*dof,gzs,gys,gxs*dof,(PetscScalar****)array);CHKERRQ(ierr); 3095edff71fSBarry Smith } else SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_CORRUPT,"DMDA dimension not 1, 2, or 3, it is %D\n",dim); 3105edff71fSBarry Smith PetscFunctionReturn(0); 3115edff71fSBarry Smith } 3125edff71fSBarry Smith 3135edff71fSBarry Smith /*@ 3145edff71fSBarry Smith DMDAVecRestoreArrayRead - Restores a multiple dimension array obtained with DMDAVecGetArrayRead() 3155edff71fSBarry Smith 3162ddbf755SMatthew G. Knepley Not collective 3175edff71fSBarry Smith 3185edff71fSBarry Smith Input Parameter: 3195edff71fSBarry Smith + da - the distributed array 3205edff71fSBarry Smith . vec - the vector, either a vector the same size as one obtained with 3215edff71fSBarry Smith DMCreateGlobalVector() or DMCreateLocalVector() 3225edff71fSBarry Smith - array - the array, non-NULL pointer is zeroed 3235edff71fSBarry Smith 3245edff71fSBarry Smith Level: intermediate 3255edff71fSBarry Smith 32695452b02SPatrick Sanan Fortran Notes: 32795452b02SPatrick Sanan From Fortran use DMDAVecRestoreArrayReadF90() 3285edff71fSBarry Smith 3295edff71fSBarry Smith .seealso: DMDAGetGhostCorners(), DMDAGetCorners(), VecGetArray(), VecRestoreArray(), DMDAVecGetArray() 3305edff71fSBarry Smith @*/ 3315edff71fSBarry Smith PetscErrorCode DMDAVecRestoreArrayRead(DM da,Vec vec,void *array) 3325edff71fSBarry Smith { 3335edff71fSBarry Smith PetscErrorCode ierr; 3345edff71fSBarry Smith PetscInt xs,ys,zs,xm,ym,zm,gxs,gys,gzs,gxm,gym,gzm,N,dim,dof; 3355edff71fSBarry Smith 3365edff71fSBarry Smith PetscFunctionBegin; 337a9a02de4SBarry Smith PetscValidHeaderSpecificType(da, DM_CLASSID, 1,DMDA); 3385edff71fSBarry Smith PetscValidHeaderSpecific(vec, VEC_CLASSID, 2); 3395edff71fSBarry Smith PetscValidPointer(array, 3); 3405edff71fSBarry Smith if (da->defaultSection) { 3415edff71fSBarry Smith ierr = VecRestoreArrayRead(vec,(const PetscScalar**)array);CHKERRQ(ierr); 3425edff71fSBarry Smith PetscFunctionReturn(0); 3435edff71fSBarry Smith } 3445edff71fSBarry Smith ierr = DMDAGetCorners(da,&xs,&ys,&zs,&xm,&ym,&zm);CHKERRQ(ierr); 3455edff71fSBarry Smith ierr = DMDAGetGhostCorners(da,&gxs,&gys,&gzs,&gxm,&gym,&gzm);CHKERRQ(ierr); 3465edff71fSBarry Smith ierr = DMDAGetInfo(da,&dim,0,0,0,0,0,0,&dof,0,0,0,0,0);CHKERRQ(ierr); 3475edff71fSBarry Smith 3485edff71fSBarry Smith /* Handle case where user passes in global vector as opposed to local */ 3495edff71fSBarry Smith ierr = VecGetLocalSize(vec,&N);CHKERRQ(ierr); 3505edff71fSBarry Smith if (N == xm*ym*zm*dof) { 3515edff71fSBarry Smith gxm = xm; 3525edff71fSBarry Smith gym = ym; 3535edff71fSBarry Smith gzm = zm; 3545edff71fSBarry Smith gxs = xs; 3555edff71fSBarry Smith gys = ys; 3565edff71fSBarry Smith gzs = zs; 3575edff71fSBarry Smith } else if (N != gxm*gym*gzm*dof) SETERRQ3(PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"Vector local size %D is not compatible with DMDA local sizes %D %D\n",N,xm*ym*zm*dof,gxm*gym*gzm*dof); 3585edff71fSBarry Smith 3595edff71fSBarry Smith if (dim == 1) { 3605edff71fSBarry Smith ierr = VecRestoreArray1dRead(vec,gxm*dof,gxs*dof,(PetscScalar**)array);CHKERRQ(ierr); 3615edff71fSBarry Smith } else if (dim == 2) { 3625edff71fSBarry Smith ierr = VecRestoreArray2dRead(vec,gym,gxm*dof,gys,gxs*dof,(PetscScalar***)array);CHKERRQ(ierr); 3635edff71fSBarry Smith } else if (dim == 3) { 3645edff71fSBarry Smith ierr = VecRestoreArray3dRead(vec,gzm,gym,gxm*dof,gzs,gys,gxs*dof,(PetscScalar****)array);CHKERRQ(ierr); 3655edff71fSBarry Smith } else SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_CORRUPT,"DMDA dimension not 1, 2, or 3, it is %D\n",dim); 3665edff71fSBarry Smith PetscFunctionReturn(0); 3675edff71fSBarry Smith } 3685edff71fSBarry Smith 3695edff71fSBarry Smith /*@C 3705edff71fSBarry Smith DMDAVecGetArrayDOFRead - Returns a multiple dimension array that shares data with 3715edff71fSBarry Smith the underlying vector and is indexed using the global dimensions. 3725edff71fSBarry Smith 3735edff71fSBarry Smith Not Collective 3745edff71fSBarry Smith 3755edff71fSBarry Smith Input Parameter: 3765edff71fSBarry Smith + da - the distributed array 3775edff71fSBarry Smith - vec - the vector, either a vector the same size as one obtained with 3785edff71fSBarry Smith DMCreateGlobalVector() or DMCreateLocalVector() 3795edff71fSBarry Smith 3805edff71fSBarry Smith Output Parameter: 3815edff71fSBarry Smith . array - the array 3825edff71fSBarry Smith 3835edff71fSBarry Smith Notes: 3845edff71fSBarry Smith Call DMDAVecRestoreArrayDOFRead() once you have finished accessing the vector entries. 3855edff71fSBarry Smith 3865edff71fSBarry Smith In C, the indexing is "backwards" from what expects: array[k][j][i][DOF] NOT array[i][j][k][DOF]! 3875edff71fSBarry Smith 3884ebdaf59SBarry Smith In Fortran 90 you do not need a version of DMDAVecRestoreArrayDOF() just use DMDAVecRestoreArrayReadF90() and declare your array with one higher dimension, 3895edff71fSBarry Smith see src/dm/examples/tutorials/ex11f90.F 3905edff71fSBarry Smith 3915edff71fSBarry Smith Level: intermediate 3925edff71fSBarry Smith 3935edff71fSBarry Smith .seealso: DMDAGetGhostCorners(), DMDAGetCorners(), VecGetArray(), VecRestoreArray(), DMDAVecRestoreArray(), DMDAVecGetArray(), DMDAVecRestoreArrayDOF() 3945edff71fSBarry Smith @*/ 3955edff71fSBarry Smith PetscErrorCode DMDAVecGetArrayDOFRead(DM da,Vec vec,void *array) 3965edff71fSBarry Smith { 3975edff71fSBarry Smith PetscErrorCode ierr; 3985edff71fSBarry Smith PetscInt xs,ys,zs,xm,ym,zm,gxs,gys,gzs,gxm,gym,gzm,N,dim,dof; 3995edff71fSBarry Smith 4005edff71fSBarry Smith PetscFunctionBegin; 4015edff71fSBarry Smith ierr = DMDAGetCorners(da,&xs,&ys,&zs,&xm,&ym,&zm);CHKERRQ(ierr); 4025edff71fSBarry Smith ierr = DMDAGetGhostCorners(da,&gxs,&gys,&gzs,&gxm,&gym,&gzm);CHKERRQ(ierr); 4035edff71fSBarry Smith ierr = DMDAGetInfo(da,&dim,0,0,0,0,0,0,&dof,0,0,0,0,0);CHKERRQ(ierr); 4045edff71fSBarry Smith 4055edff71fSBarry Smith /* Handle case where user passes in global vector as opposed to local */ 4065edff71fSBarry Smith ierr = VecGetLocalSize(vec,&N);CHKERRQ(ierr); 4075edff71fSBarry Smith if (N == xm*ym*zm*dof) { 4085edff71fSBarry Smith gxm = xm; 4095edff71fSBarry Smith gym = ym; 4105edff71fSBarry Smith gzm = zm; 4115edff71fSBarry Smith gxs = xs; 4125edff71fSBarry Smith gys = ys; 4135edff71fSBarry Smith gzs = zs; 4145edff71fSBarry Smith } else if (N != gxm*gym*gzm*dof) SETERRQ3(PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"Vector local size %D is not compatible with DMDA local sizes %D %D\n",N,xm*ym*zm*dof,gxm*gym*gzm*dof); 4155edff71fSBarry Smith 4165edff71fSBarry Smith if (dim == 1) { 4175edff71fSBarry Smith ierr = VecGetArray2dRead(vec,gxm,dof,gxs,0,(PetscScalar***)array);CHKERRQ(ierr); 4185edff71fSBarry Smith } else if (dim == 2) { 4195edff71fSBarry Smith ierr = VecGetArray3dRead(vec,gym,gxm,dof,gys,gxs,0,(PetscScalar****)array);CHKERRQ(ierr); 4205edff71fSBarry Smith } else if (dim == 3) { 4215edff71fSBarry Smith ierr = VecGetArray4dRead(vec,gzm,gym,gxm,dof,gzs,gys,gxs,0,(PetscScalar*****)array);CHKERRQ(ierr); 4225edff71fSBarry Smith } else SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_CORRUPT,"DMDA dimension not 1, 2, or 3, it is %D\n",dim); 4235edff71fSBarry Smith PetscFunctionReturn(0); 4245edff71fSBarry Smith } 4255edff71fSBarry Smith 4265edff71fSBarry Smith /*@ 4275edff71fSBarry Smith DMDAVecRestoreArrayDOFRead - Restores a multiple dimension array obtained with DMDAVecGetArrayDOFRead() 4285edff71fSBarry Smith 4295edff71fSBarry Smith Not Collective 4305edff71fSBarry Smith 4315edff71fSBarry Smith Input Parameter: 4325edff71fSBarry Smith + da - the distributed array 4335edff71fSBarry Smith . vec - the vector, either a vector the same size as one obtained with 4345edff71fSBarry Smith DMCreateGlobalVector() or DMCreateLocalVector() 4355edff71fSBarry Smith - array - the array 4365edff71fSBarry Smith 4375edff71fSBarry Smith Level: intermediate 4385edff71fSBarry Smith 4395edff71fSBarry Smith .seealso: DMDAGetGhostCorners(), DMDAGetCorners(), VecGetArray(), VecRestoreArray(), DMDAVecGetArray(), DMDAVecGetArrayDOF(), DMDAVecRestoreArrayDOF() 4405edff71fSBarry Smith @*/ 4415edff71fSBarry Smith PetscErrorCode DMDAVecRestoreArrayDOFRead(DM da,Vec vec,void *array) 4425edff71fSBarry Smith { 4435edff71fSBarry Smith PetscErrorCode ierr; 4445edff71fSBarry Smith PetscInt xs,ys,zs,xm,ym,zm,gxs,gys,gzs,gxm,gym,gzm,N,dim,dof; 4455edff71fSBarry Smith 4465edff71fSBarry Smith PetscFunctionBegin; 4475edff71fSBarry Smith ierr = DMDAGetCorners(da,&xs,&ys,&zs,&xm,&ym,&zm);CHKERRQ(ierr); 4485edff71fSBarry Smith ierr = DMDAGetGhostCorners(da,&gxs,&gys,&gzs,&gxm,&gym,&gzm);CHKERRQ(ierr); 4495edff71fSBarry Smith ierr = DMDAGetInfo(da,&dim,0,0,0,0,0,0,&dof,0,0,0,0,0);CHKERRQ(ierr); 4505edff71fSBarry Smith 4515edff71fSBarry Smith /* Handle case where user passes in global vector as opposed to local */ 4525edff71fSBarry Smith ierr = VecGetLocalSize(vec,&N);CHKERRQ(ierr); 4535edff71fSBarry Smith if (N == xm*ym*zm*dof) { 4545edff71fSBarry Smith gxm = xm; 4555edff71fSBarry Smith gym = ym; 4565edff71fSBarry Smith gzm = zm; 4575edff71fSBarry Smith gxs = xs; 4585edff71fSBarry Smith gys = ys; 4595edff71fSBarry Smith gzs = zs; 4605edff71fSBarry Smith } 4615edff71fSBarry Smith 4625edff71fSBarry Smith if (dim == 1) { 4635edff71fSBarry Smith ierr = VecRestoreArray2dRead(vec,gxm,dof,gxs,0,(PetscScalar***)array);CHKERRQ(ierr); 4645edff71fSBarry Smith } else if (dim == 2) { 4655edff71fSBarry Smith ierr = VecRestoreArray3dRead(vec,gym,gxm,dof,gys,gxs,0,(PetscScalar****)array);CHKERRQ(ierr); 4665edff71fSBarry Smith } else if (dim == 3) { 4675edff71fSBarry Smith ierr = VecRestoreArray4dRead(vec,gzm,gym,gxm,dof,gzs,gys,gxs,0,(PetscScalar*****)array);CHKERRQ(ierr); 4685edff71fSBarry Smith } else SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_CORRUPT,"DMDA dimension not 1, 2, or 3, it is %D\n",dim); 4695edff71fSBarry Smith PetscFunctionReturn(0); 4705edff71fSBarry Smith } 4715edff71fSBarry Smith 47247c6ae99SBarry Smith 47347c6ae99SBarry Smith 47447c6ae99SBarry Smith 47547c6ae99SBarry Smith 47647c6ae99SBarry Smith 47747c6ae99SBarry Smith 47847c6ae99SBarry Smith 47947c6ae99SBarry Smith 48047c6ae99SBarry Smith 48147c6ae99SBarry Smith 48247c6ae99SBarry Smith 48347c6ae99SBarry Smith 484