147c6ae99SBarry Smith 2af0996ceSBarry Smith #include <petsc/private/dmdaimpl.h> /*I "petscdmda.h" I*/ 347c6ae99SBarry Smith 447c6ae99SBarry Smith /*@C 5aa219208SBarry Smith DMDAVecGetArray - Returns a multiple dimension array that shares data with 647c6ae99SBarry Smith the underlying vector and is indexed using the global dimensions. 747c6ae99SBarry Smith 8d083f849SBarry Smith Logically collective on da 947c6ae99SBarry Smith 10d8d19677SJose E. Roman Input Parameters: 1147c6ae99SBarry Smith + da - the distributed array 12*dce8aebaSBarry Smith - vec - the vector, either a vector the same size as one obtained with `DMCreateGlobalVector()` or `DMCreateLocalVector()` 1347c6ae99SBarry Smith 1447c6ae99SBarry Smith Output Parameter: 1547c6ae99SBarry Smith . array - the array 1647c6ae99SBarry Smith 17*dce8aebaSBarry Smith Level: intermediate 18*dce8aebaSBarry Smith 1947c6ae99SBarry Smith Notes: 20*dce8aebaSBarry Smith Call `DMDAVecRestoreArray()` once you have finished accessing the vector entries. 2147c6ae99SBarry Smith 2247c6ae99SBarry Smith In C, the indexing is "backwards" from what expects: array[k][j][i] NOT array[i][j][k]! 2347c6ae99SBarry Smith 247e57d48aSBarry Smith If vec is a local vector (obtained with DMCreateLocalVector() etc) then the ghost point locations are accessible. If it is 257e57d48aSBarry Smith a global vector then the ghost points are not accessible. Of course with the local vector you will have had to do the 2647c6ae99SBarry Smith 27*dce8aebaSBarry Smith appropriate `DMGlobalToLocalBegin()` and `DMGlobalToLocalEnd()` to have correct values in the ghost locations. 2847c6ae99SBarry Smith 2995452b02SPatrick Sanan Fortran Notes: 30*dce8aebaSBarry Smith From Fortran use `DMDAVecGetArrayF90()` and pass for the array type `PetscScalar`,pointer :: array(:,...,:) of the appropriate 31*dce8aebaSBarry Smith dimension. For a `DMDA` created with a dof of 1 use the dimension of the `DMDA`, for a `DMDA` created with a dof greater than 1 use one more than the 32*dce8aebaSBarry Smith dimension of the `DMDA`. The order of the indices is array(xs:xs+xm-1,ys:ys+ym-1,zs:zs+zm-1) (when dof is 1) otherwise 33bef27881SBarry Smith array(0:dof-1,xs:xs+xm-1,ys:ys+ym-1,zs:zs+zm-1) where the values are obtained from 34af0996ceSBarry Smith DMDAGetCorners() for a global array or DMDAGetGhostCorners() for a local array. Include petsc/finclude/petscdmda.h90 to access this routine. 3547c6ae99SBarry Smith 36*dce8aebaSBarry Smith Due to bugs in the compiler `DMDAVecGetArrayF90()` does not work with gfortran versions before 4.5 3747c6ae99SBarry Smith 38*dce8aebaSBarry Smith .seealso: `DM`, `DMDA`, `DMDAGetGhostCorners()`, `DMDAGetCorners()`, `VecGetArray()`, `VecRestoreArray()`, `DMDAVecRestoreArray()`, `DMDAVecRestoreArrayDOF()` 39db781477SPatrick Sanan `DMDAVecGetArrayDOF()`, `DMDAVecGetArrayWrite()`, `DMDAVecRestoreArrayWrite()`, `DMDAVecGetArrayRead()`, `DMDAVecRestoreArrayRead()`, 40db781477SPatrick Sanan `DMStagVecGetArray()` 4147c6ae99SBarry Smith @*/ 42d71ae5a4SJacob Faibussowitsch PetscErrorCode DMDAVecGetArray(DM da, Vec vec, void *array) 43d71ae5a4SJacob Faibussowitsch { 4447c6ae99SBarry Smith PetscInt xs, ys, zs, xm, ym, zm, gxs, gys, gzs, gxm, gym, gzm, N, dim, dof; 4547c6ae99SBarry Smith 4647c6ae99SBarry Smith PetscFunctionBegin; 47a9a02de4SBarry Smith PetscValidHeaderSpecificType(da, DM_CLASSID, 1, DMDA); 486db82c94SMatthew G Knepley PetscValidHeaderSpecific(vec, VEC_CLASSID, 2); 496db82c94SMatthew G Knepley PetscValidPointer(array, 3); 509566063dSJacob Faibussowitsch PetscCall(DMDAGetCorners(da, &xs, &ys, &zs, &xm, &ym, &zm)); 519566063dSJacob Faibussowitsch PetscCall(DMDAGetGhostCorners(da, &gxs, &gys, &gzs, &gxm, &gym, &gzm)); 529566063dSJacob Faibussowitsch PetscCall(DMDAGetInfo(da, &dim, NULL, NULL, NULL, NULL, NULL, NULL, &dof, NULL, NULL, NULL, NULL, NULL)); 5347c6ae99SBarry Smith 5447c6ae99SBarry Smith /* Handle case where user passes in global vector as opposed to local */ 559566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(vec, &N)); 5647c6ae99SBarry Smith if (N == xm * ym * zm * dof) { 5747c6ae99SBarry Smith gxm = xm; 5847c6ae99SBarry Smith gym = ym; 5947c6ae99SBarry Smith gzm = zm; 6047c6ae99SBarry Smith gxs = xs; 6147c6ae99SBarry Smith gys = ys; 6247c6ae99SBarry Smith gzs = zs; 6363a3b9bcSJacob Faibussowitsch } else PetscCheck(N == gxm * gym * gzm * dof, PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "Vector local size %" PetscInt_FMT " is not compatible with DMDA local sizes %" PetscInt_FMT " %" PetscInt_FMT, N, xm * ym * zm * dof, gxm * gym * gzm * dof); 6447c6ae99SBarry Smith 6547c6ae99SBarry Smith if (dim == 1) { 669566063dSJacob Faibussowitsch PetscCall(VecGetArray1d(vec, gxm * dof, gxs * dof, (PetscScalar **)array)); 6747c6ae99SBarry Smith } else if (dim == 2) { 689566063dSJacob Faibussowitsch PetscCall(VecGetArray2d(vec, gym, gxm * dof, gys, gxs * dof, (PetscScalar ***)array)); 6947c6ae99SBarry Smith } else if (dim == 3) { 709566063dSJacob Faibussowitsch PetscCall(VecGetArray3d(vec, gzm, gym, gxm * dof, gzs, gys, gxs * dof, (PetscScalar ****)array)); 7163a3b9bcSJacob Faibussowitsch } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_CORRUPT, "DMDA dimension not 1, 2, or 3, it is %" PetscInt_FMT, dim); 7247c6ae99SBarry Smith PetscFunctionReturn(0); 7347c6ae99SBarry Smith } 7447c6ae99SBarry Smith 7547c6ae99SBarry Smith /*@ 76*dce8aebaSBarry Smith DMDAVecRestoreArray - Restores a multiple dimension array obtained with `DMDAVecGetArray()` 7747c6ae99SBarry Smith 78d083f849SBarry Smith Logically collective on da 7947c6ae99SBarry Smith 80d8d19677SJose E. Roman Input Parameters: 8147c6ae99SBarry Smith + da - the distributed array 8247c6ae99SBarry Smith . vec - the vector, either a vector the same size as one obtained with 83564755cdSBarry Smith DMCreateGlobalVector() or DMCreateLocalVector() 84e5c84f05SJed Brown - array - the array, non-NULL pointer is zeroed 8547c6ae99SBarry Smith 8647c6ae99SBarry Smith Level: intermediate 8747c6ae99SBarry Smith 88*dce8aebaSBarry Smith Fortran Note: 89*dce8aebaSBarry Smith From Fortran use `DMDAVecRestoreArayF90()` 9047c6ae99SBarry Smith 91*dce8aebaSBarry Smith .seealso: `DM`, `DMDA`, `DMDAGetGhostCorners()`, `DMDAGetCorners()`, `VecGetArray()`, `VecRestoreArray()`, `DMDAVecGetArray()`, 92db781477SPatrick Sanan `DMDAVecGetArrayWrite()`, `DMDAVecRestoreArrayWrite()`, `DMDAVecGetArrayRead()`, `DMDAVecRestoreArrayRead()`, 93db781477SPatrick Sanan `DMDStagVecRestoreArray()` 9447c6ae99SBarry Smith @*/ 95d71ae5a4SJacob Faibussowitsch PetscErrorCode DMDAVecRestoreArray(DM da, Vec vec, void *array) 96d71ae5a4SJacob Faibussowitsch { 9747c6ae99SBarry Smith PetscInt xs, ys, zs, xm, ym, zm, gxs, gys, gzs, gxm, gym, gzm, N, dim, dof; 9847c6ae99SBarry Smith 9947c6ae99SBarry Smith PetscFunctionBegin; 100a9a02de4SBarry Smith PetscValidHeaderSpecificType(da, DM_CLASSID, 1, DMDA); 1016db82c94SMatthew G Knepley PetscValidHeaderSpecific(vec, VEC_CLASSID, 2); 1026db82c94SMatthew G Knepley PetscValidPointer(array, 3); 1039566063dSJacob Faibussowitsch PetscCall(DMDAGetCorners(da, &xs, &ys, &zs, &xm, &ym, &zm)); 1049566063dSJacob Faibussowitsch PetscCall(DMDAGetGhostCorners(da, &gxs, &gys, &gzs, &gxm, &gym, &gzm)); 1059566063dSJacob Faibussowitsch PetscCall(DMDAGetInfo(da, &dim, NULL, NULL, NULL, NULL, NULL, NULL, &dof, NULL, NULL, NULL, NULL, NULL)); 10647c6ae99SBarry Smith 10747c6ae99SBarry Smith /* Handle case where user passes in global vector as opposed to local */ 1089566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(vec, &N)); 10947c6ae99SBarry Smith if (N == xm * ym * zm * dof) { 11047c6ae99SBarry Smith gxm = xm; 11147c6ae99SBarry Smith gym = ym; 11247c6ae99SBarry Smith gzm = zm; 11347c6ae99SBarry Smith gxs = xs; 11447c6ae99SBarry Smith gys = ys; 11547c6ae99SBarry Smith gzs = zs; 11663a3b9bcSJacob Faibussowitsch } else PetscCheck(N == gxm * gym * gzm * dof, PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "Vector local size %" PetscInt_FMT " is not compatible with DMDA local sizes %" PetscInt_FMT " %" PetscInt_FMT, N, xm * ym * zm * dof, gxm * gym * gzm * dof); 11747c6ae99SBarry Smith 11847c6ae99SBarry Smith if (dim == 1) { 1199566063dSJacob Faibussowitsch PetscCall(VecRestoreArray1d(vec, gxm * dof, gxs * dof, (PetscScalar **)array)); 12047c6ae99SBarry Smith } else if (dim == 2) { 1219566063dSJacob Faibussowitsch PetscCall(VecRestoreArray2d(vec, gym, gxm * dof, gys, gxs * dof, (PetscScalar ***)array)); 12247c6ae99SBarry Smith } else if (dim == 3) { 1239566063dSJacob Faibussowitsch PetscCall(VecRestoreArray3d(vec, gzm, gym, gxm * dof, gzs, gys, gxs * dof, (PetscScalar ****)array)); 12463a3b9bcSJacob Faibussowitsch } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_CORRUPT, "DMDA dimension not 1, 2, or 3, it is %" PetscInt_FMT, dim); 12547c6ae99SBarry Smith PetscFunctionReturn(0); 12647c6ae99SBarry Smith } 12747c6ae99SBarry Smith 12847c6ae99SBarry Smith /*@C 129fdc842d1SBarry Smith DMDAVecGetArrayWrite - Returns a multiple dimension array that shares data with 130fdc842d1SBarry Smith the underlying vector and is indexed using the global dimensions. 131fdc842d1SBarry Smith 132fdc842d1SBarry Smith Logically collective on Vec 133fdc842d1SBarry Smith 134d8d19677SJose E. Roman Input Parameters: 135fdc842d1SBarry Smith + da - the distributed array 136*dce8aebaSBarry Smith - vec - the vector, either a vector the same size as one obtained with `DMCreateGlobalVector()` or `DMCreateLocalVector()` 137fdc842d1SBarry Smith 138fdc842d1SBarry Smith Output Parameter: 139fdc842d1SBarry Smith . array - the array 140fdc842d1SBarry Smith 141*dce8aebaSBarry Smith Level: intermediate 142*dce8aebaSBarry Smith 143fdc842d1SBarry Smith Notes: 144*dce8aebaSBarry Smith Call `DMDAVecRestoreArray()` once you have finished accessing the vector entries. 145fdc842d1SBarry Smith 146fdc842d1SBarry Smith In C, the indexing is "backwards" from what expects: array[k][j][i] NOT array[i][j][k]! 147fdc842d1SBarry Smith 148*dce8aebaSBarry Smith If vec is a local vector (obtained with `DMCreateLocalVector()` etc) then the ghost point locations are accessible. If it is 149fdc842d1SBarry Smith a global vector then the ghost points are not accessible. Of course with the local vector you will have had to do the 150fdc842d1SBarry Smith 151*dce8aebaSBarry Smith appropriate `DMGlobalToLocalBegin()` and `DMGlobalToLocalEnd()` to have correct values in the ghost locations. 152fdc842d1SBarry Smith 153fdc842d1SBarry Smith Fortran Notes: 154*dce8aebaSBarry Smith From Fortran use `DMDAVecGetArrayF90()` and pass for the array type PetscScalar,pointer :: array(:,...,:) of the appropriate 155*dce8aebaSBarry Smith dimension. For a `DMDA` created with a dof of 1 use the dimension of the `DMDA`, for a `DMDA` created with a dof greater than 1 use one more than the 156*dce8aebaSBarry Smith dimension of the `DMDA`. The order of the indices is array(xs:xs+xm-1,ys:ys+ym-1,zs:zs+zm-1) (when dof is 1) otherwise 157fdc842d1SBarry Smith array(0:dof-1,xs:xs+xm-1,ys:ys+ym-1,zs:zs+zm-1) where the values are obtained from 158*dce8aebaSBarry Smith DMDAGetCorners() for a global array or `DMDAGetGhostCorners()` for a local array. Include petsc/finclude/petscdmda.h90 to access this routine. 159fdc842d1SBarry Smith 160*dce8aebaSBarry Smith Due to bugs in the compiler `DMDAVecGetArrayF90()` does not work with gfortran versions before 4.5 161fdc842d1SBarry Smith 162*dce8aebaSBarry Smith Developer Note: 163*dce8aebaSBarry Smith This has code duplication with `DMDAVecGetArray()` and `DMDAVecGetArrayRead()` 164fdc842d1SBarry Smith 165*dce8aebaSBarry Smith .seealso: `DM`, `DMDA`, `DMDAGetGhostCorners()`, `DMDAGetCorners()`, `VecGetArray()`, `VecRestoreArray()`, `DMDAVecRestoreArrayWrite()`, `DMDAVecRestoreArrayDOF()` 166db781477SPatrick Sanan `DMDAVecGetArrayDOF()`, `DMDAVecGetArray()`, `DMDAVecRestoreArray()`, `DMDAVecGetArrayRead()`, `DMDAVecRestoreArrayRead()` 167fdc842d1SBarry Smith @*/ 168d71ae5a4SJacob Faibussowitsch PetscErrorCode DMDAVecGetArrayWrite(DM da, Vec vec, void *array) 169d71ae5a4SJacob Faibussowitsch { 170fdc842d1SBarry Smith PetscInt xs, ys, zs, xm, ym, zm, gxs, gys, gzs, gxm, gym, gzm, N, dim, dof; 171fdc842d1SBarry Smith 172fdc842d1SBarry Smith PetscFunctionBegin; 173fdc842d1SBarry Smith PetscValidHeaderSpecificType(da, DM_CLASSID, 1, DMDA); 174fdc842d1SBarry Smith PetscValidHeaderSpecific(vec, VEC_CLASSID, 2); 175fdc842d1SBarry Smith PetscValidPointer(array, 3); 1761bb6d2a8SBarry Smith if (da->localSection) { 1779566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(vec, (PetscScalar **)array)); 178fdc842d1SBarry Smith PetscFunctionReturn(0); 179fdc842d1SBarry Smith } 1809566063dSJacob Faibussowitsch PetscCall(DMDAGetCorners(da, &xs, &ys, &zs, &xm, &ym, &zm)); 1819566063dSJacob Faibussowitsch PetscCall(DMDAGetGhostCorners(da, &gxs, &gys, &gzs, &gxm, &gym, &gzm)); 1829566063dSJacob Faibussowitsch PetscCall(DMDAGetInfo(da, &dim, NULL, NULL, NULL, NULL, NULL, NULL, &dof, NULL, NULL, NULL, NULL, NULL)); 183fdc842d1SBarry Smith 184fdc842d1SBarry Smith /* Handle case where user passes in global vector as opposed to local */ 1859566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(vec, &N)); 186fdc842d1SBarry Smith if (N == xm * ym * zm * dof) { 187fdc842d1SBarry Smith gxm = xm; 188fdc842d1SBarry Smith gym = ym; 189fdc842d1SBarry Smith gzm = zm; 190fdc842d1SBarry Smith gxs = xs; 191fdc842d1SBarry Smith gys = ys; 192fdc842d1SBarry Smith gzs = zs; 19363a3b9bcSJacob Faibussowitsch } else PetscCheck(N == gxm * gym * gzm * dof, PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "Vector local size %" PetscInt_FMT " is not compatible with DMDA local sizes %" PetscInt_FMT " %" PetscInt_FMT, N, xm * ym * zm * dof, gxm * gym * gzm * dof); 194fdc842d1SBarry Smith 195fdc842d1SBarry Smith if (dim == 1) { 1969566063dSJacob Faibussowitsch PetscCall(VecGetArray1dWrite(vec, gxm * dof, gxs * dof, (PetscScalar **)array)); 197fdc842d1SBarry Smith } else if (dim == 2) { 1989566063dSJacob Faibussowitsch PetscCall(VecGetArray2dWrite(vec, gym, gxm * dof, gys, gxs * dof, (PetscScalar ***)array)); 199fdc842d1SBarry Smith } else if (dim == 3) { 2009566063dSJacob Faibussowitsch PetscCall(VecGetArray3dWrite(vec, gzm, gym, gxm * dof, gzs, gys, gxs * dof, (PetscScalar ****)array)); 20163a3b9bcSJacob Faibussowitsch } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_CORRUPT, "DMDA dimension not 1, 2, or 3, it is %" PetscInt_FMT, dim); 202fdc842d1SBarry Smith PetscFunctionReturn(0); 203fdc842d1SBarry Smith } 204fdc842d1SBarry Smith 205fdc842d1SBarry Smith /*@ 206*dce8aebaSBarry Smith DMDAVecRestoreArrayWrite - Restores a multiple dimension array obtained with `DMDAVecGetArrayWrite()` 207fdc842d1SBarry Smith 208*dce8aebaSBarry Smith Logically collective on vec 209fdc842d1SBarry Smith 210d8d19677SJose E. Roman Input Parameters: 211fdc842d1SBarry Smith + da - the distributed array 212fdc842d1SBarry Smith . vec - the vector, either a vector the same size as one obtained with 213*dce8aebaSBarry Smith `DMCreateGlobalVector()` or `DMCreateLocalVector()` 214fdc842d1SBarry Smith - array - the array, non-NULL pointer is zeroed 215fdc842d1SBarry Smith 216fdc842d1SBarry Smith Level: intermediate 217fdc842d1SBarry Smith 218*dce8aebaSBarry Smith Fortran Note: 219*dce8aebaSBarry Smith From Fortran use `DMDAVecRestoreArayF90()` 220fdc842d1SBarry Smith 221*dce8aebaSBarry Smith .seealso: `DM`, `DMDA`, `DMDAGetGhostCorners()`, `DMDAGetCorners()`, `VecGetArray()`, `VecRestoreArray()`, `DMDAVecGetArrayWrite()`, 222db781477SPatrick Sanan `DMDAVecGetArray()`, `DMDAVecRestoreArray()`, `DMDAVecGetArrayRead()`, `DMDAVecRestoreArrayRead()` 223fdc842d1SBarry Smith @*/ 224d71ae5a4SJacob Faibussowitsch PetscErrorCode DMDAVecRestoreArrayWrite(DM da, Vec vec, void *array) 225d71ae5a4SJacob Faibussowitsch { 226fdc842d1SBarry Smith PetscInt xs, ys, zs, xm, ym, zm, gxs, gys, gzs, gxm, gym, gzm, N, dim, dof; 227fdc842d1SBarry Smith 228fdc842d1SBarry Smith PetscFunctionBegin; 229fdc842d1SBarry Smith PetscValidHeaderSpecificType(da, DM_CLASSID, 1, DMDA); 230fdc842d1SBarry Smith PetscValidHeaderSpecific(vec, VEC_CLASSID, 2); 231fdc842d1SBarry Smith PetscValidPointer(array, 3); 2321bb6d2a8SBarry Smith if (da->localSection) { 2339566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(vec, (PetscScalar **)array)); 234fdc842d1SBarry Smith PetscFunctionReturn(0); 235fdc842d1SBarry Smith } 2369566063dSJacob Faibussowitsch PetscCall(DMDAGetCorners(da, &xs, &ys, &zs, &xm, &ym, &zm)); 2379566063dSJacob Faibussowitsch PetscCall(DMDAGetGhostCorners(da, &gxs, &gys, &gzs, &gxm, &gym, &gzm)); 2389566063dSJacob Faibussowitsch PetscCall(DMDAGetInfo(da, &dim, NULL, NULL, NULL, NULL, NULL, NULL, &dof, NULL, NULL, NULL, NULL, NULL)); 239fdc842d1SBarry Smith 240fdc842d1SBarry Smith /* Handle case where user passes in global vector as opposed to local */ 2419566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(vec, &N)); 242fdc842d1SBarry Smith if (N == xm * ym * zm * dof) { 243fdc842d1SBarry Smith gxm = xm; 244fdc842d1SBarry Smith gym = ym; 245fdc842d1SBarry Smith gzm = zm; 246fdc842d1SBarry Smith gxs = xs; 247fdc842d1SBarry Smith gys = ys; 248fdc842d1SBarry Smith gzs = zs; 24963a3b9bcSJacob Faibussowitsch } else PetscCheck(N == gxm * gym * gzm * dof, PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "Vector local size %" PetscInt_FMT " is not compatible with DMDA local sizes %" PetscInt_FMT " %" PetscInt_FMT, N, xm * ym * zm * dof, gxm * gym * gzm * dof); 250fdc842d1SBarry Smith 251fdc842d1SBarry Smith if (dim == 1) { 2529566063dSJacob Faibussowitsch PetscCall(VecRestoreArray1dWrite(vec, gxm * dof, gxs * dof, (PetscScalar **)array)); 253fdc842d1SBarry Smith } else if (dim == 2) { 2549566063dSJacob Faibussowitsch PetscCall(VecRestoreArray2dWrite(vec, gym, gxm * dof, gys, gxs * dof, (PetscScalar ***)array)); 255fdc842d1SBarry Smith } else if (dim == 3) { 2569566063dSJacob Faibussowitsch PetscCall(VecRestoreArray3dWrite(vec, gzm, gym, gxm * dof, gzs, gys, gxs * dof, (PetscScalar ****)array)); 25763a3b9bcSJacob Faibussowitsch } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_CORRUPT, "DMDA dimension not 1, 2, or 3, it is %" PetscInt_FMT, dim); 258fdc842d1SBarry Smith PetscFunctionReturn(0); 259fdc842d1SBarry Smith } 260fdc842d1SBarry Smith 261fdc842d1SBarry Smith /*@C 262aa219208SBarry Smith DMDAVecGetArrayDOF - Returns a multiple dimension array that shares data with 26347c6ae99SBarry Smith the underlying vector and is indexed using the global dimensions. 26447c6ae99SBarry Smith 2652ddbf755SMatthew G. Knepley Logically collective 26647c6ae99SBarry Smith 267d8d19677SJose E. Roman Input Parameters: 26847c6ae99SBarry Smith + da - the distributed array 26947c6ae99SBarry Smith - vec - the vector, either a vector the same size as one obtained with 270*dce8aebaSBarry Smith `DMCreateGlobalVector()` or `DMCreateLocalVector()` 27147c6ae99SBarry Smith 27247c6ae99SBarry Smith Output Parameter: 27347c6ae99SBarry Smith . array - the array 27447c6ae99SBarry Smith 275*dce8aebaSBarry Smith Level: intermediate 276*dce8aebaSBarry Smith 27747c6ae99SBarry Smith Notes: 278*dce8aebaSBarry Smith Call `DMDAVecRestoreArrayDOF()` once you have finished accessing the vector entries. 27947c6ae99SBarry Smith 28047c6ae99SBarry Smith In C, the indexing is "backwards" from what expects: array[k][j][i][DOF] NOT array[i][j][k][DOF]! 28147c6ae99SBarry Smith 282*dce8aebaSBarry Smith In Fortran 90 you do not need a version of `DMDAVecRestoreArrayDOF()` just use `DMDAVecRestoreArrayF90()` and declare your array with one higher dimension, 283c4762a1bSJed Brown see src/dm/tutorials/ex11f90.F 2841b82215eSBarry Smith 285*dce8aebaSBarry Smith .seealso: `DM`, `DMDA`, `DMDAGetGhostCorners()`, `DMDAGetCorners()`, `VecGetArray()`, `VecRestoreArray()`, `DMDAVecRestoreArray()`, `DMDAVecGetArray()`, `DMDAVecRestoreArrayDOF()`, 2864ab966ffSPatrick Sanan `DMDAVecGetArrayWrite()`, `DMDAVecRestoreArrayWrite()`, `DMDAVecGetArrayRead()`, `DMDAVecRestoreArrayRead()`, `DMDAVecGetArrayDOFRead()` 28747c6ae99SBarry Smith @*/ 288d71ae5a4SJacob Faibussowitsch PetscErrorCode DMDAVecGetArrayDOF(DM da, Vec vec, void *array) 289d71ae5a4SJacob Faibussowitsch { 29047c6ae99SBarry Smith PetscInt xs, ys, zs, xm, ym, zm, gxs, gys, gzs, gxm, gym, gzm, N, dim, dof; 29147c6ae99SBarry Smith 29247c6ae99SBarry Smith PetscFunctionBegin; 2939566063dSJacob Faibussowitsch PetscCall(DMDAGetCorners(da, &xs, &ys, &zs, &xm, &ym, &zm)); 2949566063dSJacob Faibussowitsch PetscCall(DMDAGetGhostCorners(da, &gxs, &gys, &gzs, &gxm, &gym, &gzm)); 2959566063dSJacob Faibussowitsch PetscCall(DMDAGetInfo(da, &dim, NULL, NULL, NULL, NULL, NULL, NULL, &dof, NULL, NULL, NULL, NULL, NULL)); 29647c6ae99SBarry Smith 29747c6ae99SBarry Smith /* Handle case where user passes in global vector as opposed to local */ 2989566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(vec, &N)); 29947c6ae99SBarry Smith if (N == xm * ym * zm * dof) { 30047c6ae99SBarry Smith gxm = xm; 30147c6ae99SBarry Smith gym = ym; 30247c6ae99SBarry Smith gzm = zm; 30347c6ae99SBarry Smith gxs = xs; 30447c6ae99SBarry Smith gys = ys; 30547c6ae99SBarry Smith gzs = zs; 30663a3b9bcSJacob Faibussowitsch } else PetscCheck(N == gxm * gym * gzm * dof, PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "Vector local size %" PetscInt_FMT " is not compatible with DMDA local sizes %" PetscInt_FMT " %" PetscInt_FMT, N, xm * ym * zm * dof, gxm * gym * gzm * dof); 30747c6ae99SBarry Smith 30847c6ae99SBarry Smith if (dim == 1) { 3099566063dSJacob Faibussowitsch PetscCall(VecGetArray2d(vec, gxm, dof, gxs, 0, (PetscScalar ***)array)); 31047c6ae99SBarry Smith } else if (dim == 2) { 3119566063dSJacob Faibussowitsch PetscCall(VecGetArray3d(vec, gym, gxm, dof, gys, gxs, 0, (PetscScalar ****)array)); 31247c6ae99SBarry Smith } else if (dim == 3) { 3139566063dSJacob Faibussowitsch PetscCall(VecGetArray4d(vec, gzm, gym, gxm, dof, gzs, gys, gxs, 0, (PetscScalar *****)array)); 31463a3b9bcSJacob Faibussowitsch } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_CORRUPT, "DMDA dimension not 1, 2, or 3, it is %" PetscInt_FMT, dim); 31547c6ae99SBarry Smith PetscFunctionReturn(0); 31647c6ae99SBarry Smith } 31747c6ae99SBarry Smith 31847c6ae99SBarry Smith /*@ 319*dce8aebaSBarry Smith DMDAVecRestoreArrayDOF - Restores a multiple dimension array obtained with `DMDAVecGetArrayDOF()` 32047c6ae99SBarry Smith 3212ddbf755SMatthew G. Knepley Logically collective 32247c6ae99SBarry Smith 323d8d19677SJose E. Roman Input Parameters: 32447c6ae99SBarry Smith + da - the distributed array 32547c6ae99SBarry Smith . vec - the vector, either a vector the same size as one obtained with 326*dce8aebaSBarry Smith `DMCreateGlobalVector()` or `DMCreateLocalVector()` 32747c6ae99SBarry Smith - array - the array 32847c6ae99SBarry Smith 32947c6ae99SBarry Smith Level: intermediate 33047c6ae99SBarry Smith 331*dce8aebaSBarry Smith .seealso: `DM`, `DMDA`, `DMDAGetGhostCorners()`, `DMDAGetCorners()`, `VecGetArray()`, `VecRestoreArray()`, `DMDAVecGetArray()`, `DMDAVecGetArrayDOF()`, `DMDAVecRestoreArrayDOF()`, 3324ab966ffSPatrick Sanan `DMDAVecGetArrayWrite()`, `DMDAVecRestoreArrayWrite()`, `DMDAVecGetArrayRead()`, `DMDAVecRestoreArrayRead()` 33347c6ae99SBarry Smith @*/ 334d71ae5a4SJacob Faibussowitsch PetscErrorCode DMDAVecRestoreArrayDOF(DM da, Vec vec, void *array) 335d71ae5a4SJacob Faibussowitsch { 33647c6ae99SBarry Smith PetscInt xs, ys, zs, xm, ym, zm, gxs, gys, gzs, gxm, gym, gzm, N, dim, dof; 33747c6ae99SBarry Smith 33847c6ae99SBarry Smith PetscFunctionBegin; 3399566063dSJacob Faibussowitsch PetscCall(DMDAGetCorners(da, &xs, &ys, &zs, &xm, &ym, &zm)); 3409566063dSJacob Faibussowitsch PetscCall(DMDAGetGhostCorners(da, &gxs, &gys, &gzs, &gxm, &gym, &gzm)); 3419566063dSJacob Faibussowitsch PetscCall(DMDAGetInfo(da, &dim, NULL, NULL, NULL, NULL, NULL, NULL, &dof, NULL, NULL, NULL, NULL, NULL)); 34247c6ae99SBarry Smith 34347c6ae99SBarry Smith /* Handle case where user passes in global vector as opposed to local */ 3449566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(vec, &N)); 34547c6ae99SBarry Smith if (N == xm * ym * zm * dof) { 34647c6ae99SBarry Smith gxm = xm; 34747c6ae99SBarry Smith gym = ym; 34847c6ae99SBarry Smith gzm = zm; 34947c6ae99SBarry Smith gxs = xs; 35047c6ae99SBarry Smith gys = ys; 35147c6ae99SBarry Smith gzs = zs; 35247c6ae99SBarry Smith } 35347c6ae99SBarry Smith 35447c6ae99SBarry Smith if (dim == 1) { 3559566063dSJacob Faibussowitsch PetscCall(VecRestoreArray2d(vec, gxm, dof, gxs, 0, (PetscScalar ***)array)); 35647c6ae99SBarry Smith } else if (dim == 2) { 3579566063dSJacob Faibussowitsch PetscCall(VecRestoreArray3d(vec, gym, gxm, dof, gys, gxs, 0, (PetscScalar ****)array)); 35847c6ae99SBarry Smith } else if (dim == 3) { 3599566063dSJacob Faibussowitsch PetscCall(VecRestoreArray4d(vec, gzm, gym, gxm, dof, gzs, gys, gxs, 0, (PetscScalar *****)array)); 36063a3b9bcSJacob Faibussowitsch } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_CORRUPT, "DMDA dimension not 1, 2, or 3, it is %" PetscInt_FMT, dim); 36147c6ae99SBarry Smith PetscFunctionReturn(0); 36247c6ae99SBarry Smith } 36347c6ae99SBarry Smith 3645edff71fSBarry Smith /*@C 3655edff71fSBarry Smith DMDAVecGetArrayRead - Returns a multiple dimension array that shares data with 3665edff71fSBarry Smith the underlying vector and is indexed using the global dimensions. 3675edff71fSBarry Smith 3682ddbf755SMatthew G. Knepley Not collective 3695edff71fSBarry Smith 370d8d19677SJose E. Roman Input Parameters: 3715edff71fSBarry Smith + da - the distributed array 372*dce8aebaSBarry Smith - vec - the vector, either a vector the same size as one obtained with `DMCreateGlobalVector()` or `DMCreateLocalVector()` 3735edff71fSBarry Smith 3745edff71fSBarry Smith Output Parameter: 3755edff71fSBarry Smith . array - the array 3765edff71fSBarry Smith 377*dce8aebaSBarry Smith Level: intermediate 378*dce8aebaSBarry Smith 3795edff71fSBarry Smith Notes: 380*dce8aebaSBarry Smith Call `DMDAVecRestoreArrayRead()` once you have finished accessing the vector entries. 3815edff71fSBarry Smith 3825edff71fSBarry Smith In C, the indexing is "backwards" from what expects: array[k][j][i] NOT array[i][j][k]! 3835edff71fSBarry Smith 384*dce8aebaSBarry Smith If vec is a local vector (obtained with `DMCreateLocalVector()` etc) then the ghost point locations are accessible. If it is 3855edff71fSBarry Smith a global vector then the ghost points are not accessible. Of course with the local vector you will have had to do the 386*dce8aebaSBarry Smith appropriate `DMGlobalToLocalBegin()` and `DMGlobalToLocalEnd()` to have correct values in the ghost locations. 3875edff71fSBarry Smith 38895452b02SPatrick Sanan Fortran Notes: 389*dce8aebaSBarry Smith From Fortran use `DMDAVecGetArrayReadF90()` and pass for the array type `PetscScalar`,pointer :: array(:,...,:) of the appropriate 390*dce8aebaSBarry Smith dimension. For a `DMDA` created with a dof of 1 use the dimension of the `DMDA`, for a `DMDA` created with a dof greater than 1 use one more than the 391*dce8aebaSBarry Smith dimension of the `DMDA`. The order of the indices is array(xs:xs+xm-1,ys:ys+ym-1,zs:zs+zm-1) (when dof is 1) otherwise 3925edff71fSBarry Smith array(0:dof-1,xs:xs+xm-1,ys:ys+ym-1,zs:zs+zm-1) where the values are obtained from 393*dce8aebaSBarry Smith DMDAGetCorners() for a global array or `DMDAGetGhostCorners()` for a local array. Include petsc/finclude/petscdmda.h90 to access this routine. 3945edff71fSBarry Smith 395*dce8aebaSBarry Smith Due to bugs in the compiler `DMDAVecGetArrayReadF90()` does not work with gfortran versions before 4.5 3965edff71fSBarry Smith 397*dce8aebaSBarry Smith .seealso: `DM`, `DMDA`, `DMDAGetGhostCorners()`, `DMDAGetCorners()`, `VecGetArray()`, `VecRestoreArray()`, `DMDAVecRestoreArrayRead()`, `DMDAVecRestoreArrayDOF()` 398db781477SPatrick Sanan `DMDAVecGetArrayDOF()`, `DMDAVecGetArray()`, `DMDAVecRestoreArray()`, `DMDAVecGetArrayRead()`, `DMDAVecRestoreArrayRead()`, 399db781477SPatrick Sanan `DMStagVecGetArrayRead()` 4005edff71fSBarry Smith @*/ 401d71ae5a4SJacob Faibussowitsch PetscErrorCode DMDAVecGetArrayRead(DM da, Vec vec, void *array) 402d71ae5a4SJacob Faibussowitsch { 4035edff71fSBarry Smith PetscInt xs, ys, zs, xm, ym, zm, gxs, gys, gzs, gxm, gym, gzm, N, dim, dof; 4045edff71fSBarry Smith 4055edff71fSBarry Smith PetscFunctionBegin; 406a9a02de4SBarry Smith PetscValidHeaderSpecificType(da, DM_CLASSID, 1, DMDA); 4075edff71fSBarry Smith PetscValidHeaderSpecific(vec, VEC_CLASSID, 2); 4085edff71fSBarry Smith PetscValidPointer(array, 3); 4099566063dSJacob Faibussowitsch PetscCall(DMDAGetCorners(da, &xs, &ys, &zs, &xm, &ym, &zm)); 4109566063dSJacob Faibussowitsch PetscCall(DMDAGetGhostCorners(da, &gxs, &gys, &gzs, &gxm, &gym, &gzm)); 4119566063dSJacob Faibussowitsch PetscCall(DMDAGetInfo(da, &dim, NULL, NULL, NULL, NULL, NULL, NULL, &dof, NULL, NULL, NULL, NULL, NULL)); 4125edff71fSBarry Smith 4135edff71fSBarry Smith /* Handle case where user passes in global vector as opposed to local */ 4149566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(vec, &N)); 4155edff71fSBarry Smith if (N == xm * ym * zm * dof) { 4165edff71fSBarry Smith gxm = xm; 4175edff71fSBarry Smith gym = ym; 4185edff71fSBarry Smith gzm = zm; 4195edff71fSBarry Smith gxs = xs; 4205edff71fSBarry Smith gys = ys; 4215edff71fSBarry Smith gzs = zs; 42263a3b9bcSJacob Faibussowitsch } else PetscCheck(N == gxm * gym * gzm * dof, PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "Vector local size %" PetscInt_FMT " is not compatible with DMDA local sizes %" PetscInt_FMT " %" PetscInt_FMT, N, xm * ym * zm * dof, gxm * gym * gzm * dof); 4235edff71fSBarry Smith 4245edff71fSBarry Smith if (dim == 1) { 4259566063dSJacob Faibussowitsch PetscCall(VecGetArray1dRead(vec, gxm * dof, gxs * dof, (PetscScalar **)array)); 4265edff71fSBarry Smith } else if (dim == 2) { 4279566063dSJacob Faibussowitsch PetscCall(VecGetArray2dRead(vec, gym, gxm * dof, gys, gxs * dof, (PetscScalar ***)array)); 4285edff71fSBarry Smith } else if (dim == 3) { 4299566063dSJacob Faibussowitsch PetscCall(VecGetArray3dRead(vec, gzm, gym, gxm * dof, gzs, gys, gxs * dof, (PetscScalar ****)array)); 43063a3b9bcSJacob Faibussowitsch } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_CORRUPT, "DMDA dimension not 1, 2, or 3, it is %" PetscInt_FMT, dim); 4315edff71fSBarry Smith PetscFunctionReturn(0); 4325edff71fSBarry Smith } 4335edff71fSBarry Smith 4345edff71fSBarry Smith /*@ 435*dce8aebaSBarry Smith DMDAVecRestoreArrayRead - Restores a multiple dimension array obtained with `DMDAVecGetArrayRead()` 4365edff71fSBarry Smith 4372ddbf755SMatthew G. Knepley Not collective 4385edff71fSBarry Smith 439d8d19677SJose E. Roman Input Parameters: 4405edff71fSBarry Smith + da - the distributed array 4415edff71fSBarry Smith . vec - the vector, either a vector the same size as one obtained with 442*dce8aebaSBarry Smith `DMCreateGlobalVector()` or `DMCreateLocalVector()` 4435edff71fSBarry Smith - array - the array, non-NULL pointer is zeroed 4445edff71fSBarry Smith 4455edff71fSBarry Smith Level: intermediate 4465edff71fSBarry Smith 447*dce8aebaSBarry Smith Fortran Note: 448*dce8aebaSBarry Smith From Fortran use `DMDAVecRestoreArrayReadF90()` 4495edff71fSBarry Smith 450*dce8aebaSBarry Smith .seealso: `DM`, `DMDA`, `DMDAGetGhostCorners()`, `DMDAGetCorners()`, `VecGetArray()`, `VecRestoreArray()`, `DMDAVecGetArrayRead()`, 451db781477SPatrick Sanan `DMDAVecGetArray()`, `DMDAVecRestoreArray()`, `DMDAVecGetArrayWrite()`, `DMDAVecRestoreArrayWrite()`, 452db781477SPatrick Sanan `DMStagVecRestoreArrayRead()` 4535edff71fSBarry Smith @*/ 454d71ae5a4SJacob Faibussowitsch PetscErrorCode DMDAVecRestoreArrayRead(DM da, Vec vec, void *array) 455d71ae5a4SJacob Faibussowitsch { 4565edff71fSBarry Smith PetscInt xs, ys, zs, xm, ym, zm, gxs, gys, gzs, gxm, gym, gzm, N, dim, dof; 4575edff71fSBarry Smith 4585edff71fSBarry Smith PetscFunctionBegin; 459a9a02de4SBarry Smith PetscValidHeaderSpecificType(da, DM_CLASSID, 1, DMDA); 4605edff71fSBarry Smith PetscValidHeaderSpecific(vec, VEC_CLASSID, 2); 4615edff71fSBarry Smith PetscValidPointer(array, 3); 4629566063dSJacob Faibussowitsch PetscCall(DMDAGetCorners(da, &xs, &ys, &zs, &xm, &ym, &zm)); 4639566063dSJacob Faibussowitsch PetscCall(DMDAGetGhostCorners(da, &gxs, &gys, &gzs, &gxm, &gym, &gzm)); 4649566063dSJacob Faibussowitsch PetscCall(DMDAGetInfo(da, &dim, NULL, NULL, NULL, NULL, NULL, NULL, &dof, NULL, NULL, NULL, NULL, NULL)); 4655edff71fSBarry Smith 4665edff71fSBarry Smith /* Handle case where user passes in global vector as opposed to local */ 4679566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(vec, &N)); 4685edff71fSBarry Smith if (N == xm * ym * zm * dof) { 4695edff71fSBarry Smith gxm = xm; 4705edff71fSBarry Smith gym = ym; 4715edff71fSBarry Smith gzm = zm; 4725edff71fSBarry Smith gxs = xs; 4735edff71fSBarry Smith gys = ys; 4745edff71fSBarry Smith gzs = zs; 47563a3b9bcSJacob Faibussowitsch } else PetscCheck(N == gxm * gym * gzm * dof, PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "Vector local size %" PetscInt_FMT " is not compatible with DMDA local sizes %" PetscInt_FMT " %" PetscInt_FMT, N, xm * ym * zm * dof, gxm * gym * gzm * dof); 4765edff71fSBarry Smith 4775edff71fSBarry Smith if (dim == 1) { 4789566063dSJacob Faibussowitsch PetscCall(VecRestoreArray1dRead(vec, gxm * dof, gxs * dof, (PetscScalar **)array)); 4795edff71fSBarry Smith } else if (dim == 2) { 4809566063dSJacob Faibussowitsch PetscCall(VecRestoreArray2dRead(vec, gym, gxm * dof, gys, gxs * dof, (PetscScalar ***)array)); 4815edff71fSBarry Smith } else if (dim == 3) { 4829566063dSJacob Faibussowitsch PetscCall(VecRestoreArray3dRead(vec, gzm, gym, gxm * dof, gzs, gys, gxs * dof, (PetscScalar ****)array)); 48363a3b9bcSJacob Faibussowitsch } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_CORRUPT, "DMDA dimension not 1, 2, or 3, it is %" PetscInt_FMT, dim); 4845edff71fSBarry Smith PetscFunctionReturn(0); 4855edff71fSBarry Smith } 4865edff71fSBarry Smith 4875edff71fSBarry Smith /*@C 4885edff71fSBarry Smith DMDAVecGetArrayDOFRead - Returns a multiple dimension array that shares data with 4895edff71fSBarry Smith the underlying vector and is indexed using the global dimensions. 4905edff71fSBarry Smith 4915edff71fSBarry Smith Not Collective 4925edff71fSBarry Smith 493d8d19677SJose E. Roman Input Parameters: 4945edff71fSBarry Smith + da - the distributed array 4955edff71fSBarry Smith - vec - the vector, either a vector the same size as one obtained with 496*dce8aebaSBarry Smith `DMCreateGlobalVector()` or `DMCreateLocalVector()` 4975edff71fSBarry Smith 4985edff71fSBarry Smith Output Parameter: 4995edff71fSBarry Smith . array - the array 5005edff71fSBarry Smith 501*dce8aebaSBarry Smith Level: intermediate 502*dce8aebaSBarry Smith 5035edff71fSBarry Smith Notes: 504*dce8aebaSBarry Smith Call `DMDAVecRestoreArrayDOFRead()` once you have finished accessing the vector entries. 5055edff71fSBarry Smith 5065edff71fSBarry Smith In C, the indexing is "backwards" from what expects: array[k][j][i][DOF] NOT array[i][j][k][DOF]! 5075edff71fSBarry Smith 508*dce8aebaSBarry Smith Fortran Note: 509*dce8aebaSBarry Smith In Fortran you do not need a version of `DMDAVecRestoreArrayDOF()` just use `DMDAVecRestoreArrayReadF90()` and declare your array with one higher dimension, 510c4762a1bSJed Brown see src/dm/tutorials/ex11f90.F 5115edff71fSBarry Smith 512*dce8aebaSBarry Smith .seealso: `DM`, `DMDA`, `DMDAGetGhostCorners()`, `DMDAGetCorners()`, `VecGetArray()`, `VecRestoreArray()`, `DMDAVecRestoreArray()`, `DMDAVecGetArray()`, `DMDAVecGetArrayDOF()`, 5134ab966ffSPatrick Sanan `DMDAVecGetArrayWrite()`, `DMDAVecRestoreArrayWrite()`, `DMDAVecGetArrayRead()`, `DMDAVecRestoreArrayRead()` 5145edff71fSBarry Smith @*/ 515d71ae5a4SJacob Faibussowitsch PetscErrorCode DMDAVecGetArrayDOFRead(DM da, Vec vec, void *array) 516d71ae5a4SJacob Faibussowitsch { 5175edff71fSBarry Smith PetscInt xs, ys, zs, xm, ym, zm, gxs, gys, gzs, gxm, gym, gzm, N, dim, dof; 5185edff71fSBarry Smith 5195edff71fSBarry Smith PetscFunctionBegin; 5209566063dSJacob Faibussowitsch PetscCall(DMDAGetCorners(da, &xs, &ys, &zs, &xm, &ym, &zm)); 5219566063dSJacob Faibussowitsch PetscCall(DMDAGetGhostCorners(da, &gxs, &gys, &gzs, &gxm, &gym, &gzm)); 5229566063dSJacob Faibussowitsch PetscCall(DMDAGetInfo(da, &dim, NULL, NULL, NULL, NULL, NULL, NULL, &dof, NULL, NULL, NULL, NULL, NULL)); 5235edff71fSBarry Smith 5245edff71fSBarry Smith /* Handle case where user passes in global vector as opposed to local */ 5259566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(vec, &N)); 5265edff71fSBarry Smith if (N == xm * ym * zm * dof) { 5275edff71fSBarry Smith gxm = xm; 5285edff71fSBarry Smith gym = ym; 5295edff71fSBarry Smith gzm = zm; 5305edff71fSBarry Smith gxs = xs; 5315edff71fSBarry Smith gys = ys; 5325edff71fSBarry Smith gzs = zs; 53363a3b9bcSJacob Faibussowitsch } else PetscCheck(N == gxm * gym * gzm * dof, PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "Vector local size %" PetscInt_FMT " is not compatible with DMDA local sizes %" PetscInt_FMT " %" PetscInt_FMT, N, xm * ym * zm * dof, gxm * gym * gzm * dof); 5345edff71fSBarry Smith 5355edff71fSBarry Smith if (dim == 1) { 5369566063dSJacob Faibussowitsch PetscCall(VecGetArray2dRead(vec, gxm, dof, gxs, 0, (PetscScalar ***)array)); 5375edff71fSBarry Smith } else if (dim == 2) { 5389566063dSJacob Faibussowitsch PetscCall(VecGetArray3dRead(vec, gym, gxm, dof, gys, gxs, 0, (PetscScalar ****)array)); 5395edff71fSBarry Smith } else if (dim == 3) { 5409566063dSJacob Faibussowitsch PetscCall(VecGetArray4dRead(vec, gzm, gym, gxm, dof, gzs, gys, gxs, 0, (PetscScalar *****)array)); 54163a3b9bcSJacob Faibussowitsch } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_CORRUPT, "DMDA dimension not 1, 2, or 3, it is %" PetscInt_FMT, dim); 5425edff71fSBarry Smith PetscFunctionReturn(0); 5435edff71fSBarry Smith } 5445edff71fSBarry Smith 5455edff71fSBarry Smith /*@ 546*dce8aebaSBarry Smith DMDAVecRestoreArrayDOFRead - Restores a multiple dimension array obtained with `DMDAVecGetArrayDOFRead()` 5475edff71fSBarry Smith 5485edff71fSBarry Smith Not Collective 5495edff71fSBarry Smith 550d8d19677SJose E. Roman Input Parameters: 5515edff71fSBarry Smith + da - the distributed array 5525edff71fSBarry Smith . vec - the vector, either a vector the same size as one obtained with 553*dce8aebaSBarry Smith `DMCreateGlobalVector()` or `DMCreateLocalVector()` 5545edff71fSBarry Smith - array - the array 5555edff71fSBarry Smith 5565edff71fSBarry Smith Level: intermediate 5575edff71fSBarry Smith 558*dce8aebaSBarry Smith .seealso: `DM`, `DMDA`, `DMDAGetGhostCorners()`, `DMDAGetCorners()`, `VecGetArray()`, `VecRestoreArray()`, `DMDAVecGetArray()`, `DMDAVecGetArrayDOF()`, `DMDAVecRestoreArrayDOF()`, 5594ab966ffSPatrick Sanan `DMDAVecGetArrayWrite()`, `DMDAVecRestoreArrayWrite()`, `DMDAVecGetArrayRead()`, `DMDAVecRestoreArrayRead()` 5605edff71fSBarry Smith @*/ 561d71ae5a4SJacob Faibussowitsch PetscErrorCode DMDAVecRestoreArrayDOFRead(DM da, Vec vec, void *array) 562d71ae5a4SJacob Faibussowitsch { 5635edff71fSBarry Smith PetscInt xs, ys, zs, xm, ym, zm, gxs, gys, gzs, gxm, gym, gzm, N, dim, dof; 5645edff71fSBarry Smith 5655edff71fSBarry Smith PetscFunctionBegin; 5669566063dSJacob Faibussowitsch PetscCall(DMDAGetCorners(da, &xs, &ys, &zs, &xm, &ym, &zm)); 5679566063dSJacob Faibussowitsch PetscCall(DMDAGetGhostCorners(da, &gxs, &gys, &gzs, &gxm, &gym, &gzm)); 5689566063dSJacob Faibussowitsch PetscCall(DMDAGetInfo(da, &dim, NULL, NULL, NULL, NULL, NULL, NULL, &dof, NULL, NULL, NULL, NULL, NULL)); 5695edff71fSBarry Smith 5705edff71fSBarry Smith /* Handle case where user passes in global vector as opposed to local */ 5719566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(vec, &N)); 5725edff71fSBarry Smith if (N == xm * ym * zm * dof) { 5735edff71fSBarry Smith gxm = xm; 5745edff71fSBarry Smith gym = ym; 5755edff71fSBarry Smith gzm = zm; 5765edff71fSBarry Smith gxs = xs; 5775edff71fSBarry Smith gys = ys; 5785edff71fSBarry Smith gzs = zs; 5795edff71fSBarry Smith } 5805edff71fSBarry Smith 5815edff71fSBarry Smith if (dim == 1) { 5829566063dSJacob Faibussowitsch PetscCall(VecRestoreArray2dRead(vec, gxm, dof, gxs, 0, (PetscScalar ***)array)); 5835edff71fSBarry Smith } else if (dim == 2) { 5849566063dSJacob Faibussowitsch PetscCall(VecRestoreArray3dRead(vec, gym, gxm, dof, gys, gxs, 0, (PetscScalar ****)array)); 5855edff71fSBarry Smith } else if (dim == 3) { 5869566063dSJacob Faibussowitsch PetscCall(VecRestoreArray4dRead(vec, gzm, gym, gxm, dof, gzs, gys, gxs, 0, (PetscScalar *****)array)); 58763a3b9bcSJacob Faibussowitsch } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_CORRUPT, "DMDA dimension not 1, 2, or 3, it is %" PetscInt_FMT, dim); 5885edff71fSBarry Smith PetscFunctionReturn(0); 5895edff71fSBarry Smith } 5905edff71fSBarry Smith 5911e5d2365SBarry Smith /*@C 5921e5d2365SBarry Smith DMDAVecGetArrayDOFWrite - Returns a multiple dimension array that shares data with 5931e5d2365SBarry Smith the underlying vector and is indexed using the global dimensions. 5941e5d2365SBarry Smith 5951e5d2365SBarry Smith Not Collective 5961e5d2365SBarry Smith 597d8d19677SJose E. Roman Input Parameters: 5981e5d2365SBarry Smith + da - the distributed array 5991e5d2365SBarry Smith - vec - the vector, either a vector the same size as one obtained with 600*dce8aebaSBarry Smith `DMCreateGlobalVector()` or `DMCreateLocalVector()` 6011e5d2365SBarry Smith 6021e5d2365SBarry Smith Output Parameter: 6031e5d2365SBarry Smith . array - the array 6041e5d2365SBarry Smith 6051e5d2365SBarry Smith Notes: 606*dce8aebaSBarry Smith Call `DMDAVecRestoreArrayDOFWrite()` once you have finished accessing the vector entries. 6071e5d2365SBarry Smith 6081e5d2365SBarry Smith In C, the indexing is "backwards" from what expects: array[k][j][i][DOF] NOT array[i][j][k][DOF]! 6091e5d2365SBarry Smith 610*dce8aebaSBarry Smith Fortran Noe: 611*dce8aebaSBarry Smith In Fortran you do not need a version of `DMDAVecRestoreArrayDOF()` just use `DMDAVecRestoreArrayWriteF90()` and declare your array with one higher dimension, 6121e5d2365SBarry Smith see src/dm/tutorials/ex11f90.F 6131e5d2365SBarry Smith 6141e5d2365SBarry Smith Level: intermediate 6151e5d2365SBarry Smith 616*dce8aebaSBarry Smith .seealso: `DM`, `DMDA`, `DMDAGetGhostCorners()`, `DMDAGetCorners()`, `VecGetArray()`, `VecRestoreArray()`, `DMDAVecRestoreArray()`, `DMDAVecGetArray()`, `DMDAVecGetArrayDOF()`, 6174ab966ffSPatrick Sanan `DMDAVecGetArrayWrite()`, `DMDAVecRestoreArrayWrite()`, `DMDAVecGetArrayWrite()`, `DMDAVecRestoreArrayWrite()` 6181e5d2365SBarry Smith @*/ 619d71ae5a4SJacob Faibussowitsch PetscErrorCode DMDAVecGetArrayDOFWrite(DM da, Vec vec, void *array) 620d71ae5a4SJacob Faibussowitsch { 6211e5d2365SBarry Smith PetscInt xs, ys, zs, xm, ym, zm, gxs, gys, gzs, gxm, gym, gzm, N, dim, dof; 6221e5d2365SBarry Smith 6231e5d2365SBarry Smith PetscFunctionBegin; 6249566063dSJacob Faibussowitsch PetscCall(DMDAGetCorners(da, &xs, &ys, &zs, &xm, &ym, &zm)); 6259566063dSJacob Faibussowitsch PetscCall(DMDAGetGhostCorners(da, &gxs, &gys, &gzs, &gxm, &gym, &gzm)); 6269566063dSJacob Faibussowitsch PetscCall(DMDAGetInfo(da, &dim, NULL, NULL, NULL, NULL, NULL, NULL, &dof, NULL, NULL, NULL, NULL, NULL)); 6271e5d2365SBarry Smith 6281e5d2365SBarry Smith /* Handle case where user passes in global vector as opposed to local */ 6299566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(vec, &N)); 6301e5d2365SBarry Smith if (N == xm * ym * zm * dof) { 6311e5d2365SBarry Smith gxm = xm; 6321e5d2365SBarry Smith gym = ym; 6331e5d2365SBarry Smith gzm = zm; 6341e5d2365SBarry Smith gxs = xs; 6351e5d2365SBarry Smith gys = ys; 6361e5d2365SBarry Smith gzs = zs; 63763a3b9bcSJacob Faibussowitsch } else PetscCheck(N == gxm * gym * gzm * dof, PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "Vector local size %" PetscInt_FMT " is not compatible with DMDA local sizes %" PetscInt_FMT " %" PetscInt_FMT, N, xm * ym * zm * dof, gxm * gym * gzm * dof); 6381e5d2365SBarry Smith 6391e5d2365SBarry Smith if (dim == 1) { 6409566063dSJacob Faibussowitsch PetscCall(VecGetArray2dWrite(vec, gxm, dof, gxs, 0, (PetscScalar ***)array)); 6411e5d2365SBarry Smith } else if (dim == 2) { 6429566063dSJacob Faibussowitsch PetscCall(VecGetArray3dWrite(vec, gym, gxm, dof, gys, gxs, 0, (PetscScalar ****)array)); 6431e5d2365SBarry Smith } else if (dim == 3) { 6449566063dSJacob Faibussowitsch PetscCall(VecGetArray4dWrite(vec, gzm, gym, gxm, dof, gzs, gys, gxs, 0, (PetscScalar *****)array)); 64563a3b9bcSJacob Faibussowitsch } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_CORRUPT, "DMDA dimension not 1, 2, or 3, it is %" PetscInt_FMT, dim); 6461e5d2365SBarry Smith PetscFunctionReturn(0); 6471e5d2365SBarry Smith } 6481e5d2365SBarry Smith 6491e5d2365SBarry Smith /*@ 650*dce8aebaSBarry Smith DMDAVecRestoreArrayDOFWrite - Restores a multiple dimension array obtained with `DMDAVecGetArrayDOFWrite()` 6511e5d2365SBarry Smith 6521e5d2365SBarry Smith Not Collective 6531e5d2365SBarry Smith 654d8d19677SJose E. Roman Input Parameters: 6551e5d2365SBarry Smith + da - the distributed array 6561e5d2365SBarry Smith . vec - the vector, either a vector the same size as one obtained with 657*dce8aebaSBarry Smith `DMCreateGlobalVector()` or `DMCreateLocalVector()` 6581e5d2365SBarry Smith - array - the array 6591e5d2365SBarry Smith 6601e5d2365SBarry Smith Level: intermediate 6611e5d2365SBarry Smith 662*dce8aebaSBarry Smith .seealso: `DM`, `DMDA`, `DMDAGetGhostCorners()`, `DMDAGetCorners()`, `VecGetArray()`, `VecRestoreArray()`, `DMDAVecGetArray()`, `DMDAVecGetArrayDOF()`, `DMDAVecRestoreArrayDOF()`, 6634ab966ffSPatrick Sanan `DMDAVecGetArrayWrite()`, `DMDAVecRestoreArrayWrite()`, `DMDAVecGetArrayWrite()`, `DMDAVecRestoreArrayWrite()` 6641e5d2365SBarry Smith @*/ 665d71ae5a4SJacob Faibussowitsch PetscErrorCode DMDAVecRestoreArrayDOFWrite(DM da, Vec vec, void *array) 666d71ae5a4SJacob Faibussowitsch { 6671e5d2365SBarry Smith PetscInt xs, ys, zs, xm, ym, zm, gxs, gys, gzs, gxm, gym, gzm, N, dim, dof; 6681e5d2365SBarry Smith 6691e5d2365SBarry Smith PetscFunctionBegin; 6709566063dSJacob Faibussowitsch PetscCall(DMDAGetCorners(da, &xs, &ys, &zs, &xm, &ym, &zm)); 6719566063dSJacob Faibussowitsch PetscCall(DMDAGetGhostCorners(da, &gxs, &gys, &gzs, &gxm, &gym, &gzm)); 6729566063dSJacob Faibussowitsch PetscCall(DMDAGetInfo(da, &dim, NULL, NULL, NULL, NULL, NULL, NULL, &dof, NULL, NULL, NULL, NULL, NULL)); 6731e5d2365SBarry Smith 6741e5d2365SBarry Smith /* Handle case where user passes in global vector as opposed to local */ 6759566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(vec, &N)); 6761e5d2365SBarry Smith if (N == xm * ym * zm * dof) { 6771e5d2365SBarry Smith gxm = xm; 6781e5d2365SBarry Smith gym = ym; 6791e5d2365SBarry Smith gzm = zm; 6801e5d2365SBarry Smith gxs = xs; 6811e5d2365SBarry Smith gys = ys; 6821e5d2365SBarry Smith gzs = zs; 6831e5d2365SBarry Smith } 6841e5d2365SBarry Smith 6851e5d2365SBarry Smith if (dim == 1) { 6869566063dSJacob Faibussowitsch PetscCall(VecRestoreArray2dWrite(vec, gxm, dof, gxs, 0, (PetscScalar ***)array)); 6871e5d2365SBarry Smith } else if (dim == 2) { 6889566063dSJacob Faibussowitsch PetscCall(VecRestoreArray3dWrite(vec, gym, gxm, dof, gys, gxs, 0, (PetscScalar ****)array)); 6891e5d2365SBarry Smith } else if (dim == 3) { 6909566063dSJacob Faibussowitsch PetscCall(VecRestoreArray4dWrite(vec, gzm, gym, gxm, dof, gzs, gys, gxs, 0, (PetscScalar *****)array)); 69163a3b9bcSJacob Faibussowitsch } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_CORRUPT, "DMDA dimension not 1, 2, or 3, it is %" PetscInt_FMT, dim); 6921e5d2365SBarry Smith PetscFunctionReturn(0); 6931e5d2365SBarry Smith } 694