19be51f97SToby Isaac #include <petsc/private/dmforestimpl.h> /*I "petscdmforest.h" I*/ 29be51f97SToby Isaac #include <petsc/private/dmimpl.h> /*I "petscdm.h" I*/ 3a1b0c543SToby Isaac #include <petsc/private/dmlabelimpl.h> /*I "petscdmlabel.h" I*/ 4ef19d27cSToby Isaac #include <petscsf.h> 5db4d5e8cSToby Isaac 627d4645fSToby Isaac PetscBool DMForestPackageInitialized = PETSC_FALSE; 727d4645fSToby Isaac 827d4645fSToby Isaac typedef struct _DMForestTypeLink*DMForestTypeLink; 927d4645fSToby Isaac 1027d4645fSToby Isaac struct _DMForestTypeLink 1127d4645fSToby Isaac { 1227d4645fSToby Isaac char *name; 1327d4645fSToby Isaac DMForestTypeLink next; 1427d4645fSToby Isaac }; 1527d4645fSToby Isaac 1627d4645fSToby Isaac DMForestTypeLink DMForestTypeList; 1727d4645fSToby Isaac 1827d4645fSToby Isaac static PetscErrorCode DMForestPackageFinalize(void) 1927d4645fSToby Isaac { 2027d4645fSToby Isaac DMForestTypeLink oldLink, link = DMForestTypeList; 2127d4645fSToby Isaac PetscErrorCode ierr; 2227d4645fSToby Isaac 2327d4645fSToby Isaac PetscFunctionBegin; 2427d4645fSToby Isaac while (link) { 2527d4645fSToby Isaac oldLink = link; 26f416af30SBarry Smith ierr = PetscFree(oldLink->name);CHKERRQ(ierr); 2727d4645fSToby Isaac link = oldLink->next; 2827d4645fSToby Isaac ierr = PetscFree(oldLink);CHKERRQ(ierr); 2927d4645fSToby Isaac } 3027d4645fSToby Isaac PetscFunctionReturn(0); 3127d4645fSToby Isaac } 3227d4645fSToby Isaac 3327d4645fSToby Isaac static PetscErrorCode DMForestPackageInitialize(void) 3427d4645fSToby Isaac { 3527d4645fSToby Isaac PetscErrorCode ierr; 3627d4645fSToby Isaac 3727d4645fSToby Isaac PetscFunctionBegin; 3827d4645fSToby Isaac if (DMForestPackageInitialized) PetscFunctionReturn(0); 3927d4645fSToby Isaac DMForestPackageInitialized = PETSC_TRUE; 40f885a11aSToby Isaac 4127d4645fSToby Isaac ierr = DMForestRegisterType(DMFOREST);CHKERRQ(ierr); 4227d4645fSToby Isaac ierr = PetscRegisterFinalize(DMForestPackageFinalize);CHKERRQ(ierr); 4327d4645fSToby Isaac PetscFunctionReturn(0); 4427d4645fSToby Isaac } 4527d4645fSToby Isaac 469be51f97SToby Isaac /*@C 479be51f97SToby Isaac DMForestRegisterType - Registers a DMType as a subtype of DMFOREST (so that DMIsForest() will be correct) 489be51f97SToby Isaac 499be51f97SToby Isaac Not Collective 509be51f97SToby Isaac 519be51f97SToby Isaac Input parameter: 529be51f97SToby Isaac . name - the name of the type 539be51f97SToby Isaac 549be51f97SToby Isaac Level: advanced 559be51f97SToby Isaac 569be51f97SToby Isaac .seealso: DMFOREST, DMIsForest() 579be51f97SToby Isaac @*/ 5827d4645fSToby Isaac PetscErrorCode DMForestRegisterType(DMType name) 5927d4645fSToby Isaac { 6027d4645fSToby Isaac DMForestTypeLink link; 6127d4645fSToby Isaac PetscErrorCode ierr; 6227d4645fSToby Isaac 6327d4645fSToby Isaac PetscFunctionBegin; 6427d4645fSToby Isaac ierr = DMForestPackageInitialize();CHKERRQ(ierr); 6527d4645fSToby Isaac ierr = PetscNew(&link);CHKERRQ(ierr); 6627d4645fSToby Isaac ierr = PetscStrallocpy(name,&link->name);CHKERRQ(ierr); 6727d4645fSToby Isaac link->next = DMForestTypeList; 6827d4645fSToby Isaac DMForestTypeList = link; 6927d4645fSToby Isaac PetscFunctionReturn(0); 7027d4645fSToby Isaac } 7127d4645fSToby Isaac 729be51f97SToby Isaac /*@ 739be51f97SToby Isaac DMIsForest - Check whether a DM uses the DMFOREST interface for hierarchically-refined meshes 749be51f97SToby Isaac 759be51f97SToby Isaac Not Collective 769be51f97SToby Isaac 779be51f97SToby Isaac Input parameter: 789be51f97SToby Isaac . dm - the DM object 799be51f97SToby Isaac 809be51f97SToby Isaac Output parameter: 819be51f97SToby Isaac . isForest - whether dm is a subtype of DMFOREST 829be51f97SToby Isaac 839be51f97SToby Isaac Level: intermediate 849be51f97SToby Isaac 859be51f97SToby Isaac .seealso: DMFOREST, DMForestRegisterType() 869be51f97SToby Isaac @*/ 8727d4645fSToby Isaac PetscErrorCode DMIsForest(DM dm, PetscBool *isForest) 8827d4645fSToby Isaac { 8927d4645fSToby Isaac DMForestTypeLink link = DMForestTypeList; 9027d4645fSToby Isaac PetscErrorCode ierr; 9127d4645fSToby Isaac 9227d4645fSToby Isaac PetscFunctionBegin; 9327d4645fSToby Isaac while (link) { 9427d4645fSToby Isaac PetscBool sameType; 9527d4645fSToby Isaac ierr = PetscObjectTypeCompare((PetscObject)dm,link->name,&sameType);CHKERRQ(ierr); 9627d4645fSToby Isaac if (sameType) { 9727d4645fSToby Isaac *isForest = PETSC_TRUE; 9827d4645fSToby Isaac PetscFunctionReturn(0); 9927d4645fSToby Isaac } 10027d4645fSToby Isaac link = link->next; 10127d4645fSToby Isaac } 10227d4645fSToby Isaac *isForest = PETSC_FALSE; 10327d4645fSToby Isaac PetscFunctionReturn(0); 10427d4645fSToby Isaac } 10527d4645fSToby Isaac 1069be51f97SToby Isaac /*@ 1079be51f97SToby Isaac DMForestTemplate - Create a new DM that will be adapted from a source DM. The new DM reproduces the configuration 1089be51f97SToby Isaac of the source, but is not yet setup, so that the user can then define only the ways that the new DM should differ 1099be51f97SToby Isaac (by, e.g., refinement or repartitioning). The source DM is also set as the adaptivity source DM of the new DM (see 1109be51f97SToby Isaac DMForestSetAdaptivityForest()). 1119be51f97SToby Isaac 1129be51f97SToby Isaac Collective on dm 1139be51f97SToby Isaac 1149be51f97SToby Isaac Input Parameters: 1159be51f97SToby Isaac + dm - the source DM object 1169be51f97SToby Isaac - comm - the communicator for the new DM (this communicator is currently ignored, but is present so that DMForestTemplate() can be used within DMCoarsen()) 1179be51f97SToby Isaac 1189be51f97SToby Isaac Output Parameter: 1199be51f97SToby Isaac . tdm - the new DM object 1209be51f97SToby Isaac 1219be51f97SToby Isaac Level: intermediate 1229be51f97SToby Isaac 1239be51f97SToby Isaac .seealso: DMForestSetAdaptivityForest() 1249be51f97SToby Isaac @*/ 1259be51f97SToby Isaac PetscErrorCode DMForestTemplate(DM dm, MPI_Comm comm, DM *tdm) 126a0452a8eSToby Isaac { 127a0452a8eSToby Isaac DM_Forest *forest = (DM_Forest*) dm->data; 12820e8089bSToby Isaac DMType type; 129a0452a8eSToby Isaac DM base; 130a0452a8eSToby Isaac DMForestTopology topology; 131a0452a8eSToby Isaac PetscInt dim, overlap, ref, factor; 132a0452a8eSToby Isaac DMForestAdaptivityStrategy strat; 133795844e7SToby Isaac PetscDS ds; 134795844e7SToby Isaac void *ctx; 13549fc9a2fSToby Isaac PetscErrorCode (*map)(DM, PetscInt, PetscInt, const PetscReal[], PetscReal[], void*); 1363e58adeeSToby Isaac void *mapCtx; 137a0452a8eSToby Isaac PetscErrorCode ierr; 138a0452a8eSToby Isaac 139a0452a8eSToby Isaac PetscFunctionBegin; 140a0452a8eSToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 14120e8089bSToby Isaac ierr = DMCreate(PetscObjectComm((PetscObject)dm),tdm);CHKERRQ(ierr); 14220e8089bSToby Isaac ierr = DMGetType(dm,&type);CHKERRQ(ierr); 14320e8089bSToby Isaac ierr = DMSetType(*tdm,type);CHKERRQ(ierr); 144a0452a8eSToby Isaac ierr = DMForestGetBaseDM(dm,&base);CHKERRQ(ierr); 14520e8089bSToby Isaac ierr = DMForestSetBaseDM(*tdm,base);CHKERRQ(ierr); 146a0452a8eSToby Isaac ierr = DMForestGetTopology(dm,&topology);CHKERRQ(ierr); 14720e8089bSToby Isaac ierr = DMForestSetTopology(*tdm,topology);CHKERRQ(ierr); 148a0452a8eSToby Isaac ierr = DMForestGetAdjacencyDimension(dm,&dim);CHKERRQ(ierr); 14920e8089bSToby Isaac ierr = DMForestSetAdjacencyDimension(*tdm,dim);CHKERRQ(ierr); 150a0452a8eSToby Isaac ierr = DMForestGetPartitionOverlap(dm,&overlap);CHKERRQ(ierr); 15120e8089bSToby Isaac ierr = DMForestSetPartitionOverlap(*tdm,overlap);CHKERRQ(ierr); 152a0452a8eSToby Isaac ierr = DMForestGetMinimumRefinement(dm,&ref);CHKERRQ(ierr); 15320e8089bSToby Isaac ierr = DMForestSetMinimumRefinement(*tdm,ref);CHKERRQ(ierr); 154a0452a8eSToby Isaac ierr = DMForestGetMaximumRefinement(dm,&ref);CHKERRQ(ierr); 15520e8089bSToby Isaac ierr = DMForestSetMaximumRefinement(*tdm,ref);CHKERRQ(ierr); 156a0452a8eSToby Isaac ierr = DMForestGetAdaptivityStrategy(dm,&strat);CHKERRQ(ierr); 15720e8089bSToby Isaac ierr = DMForestSetAdaptivityStrategy(*tdm,strat);CHKERRQ(ierr); 158a0452a8eSToby Isaac ierr = DMForestGetGradeFactor(dm,&factor);CHKERRQ(ierr); 15920e8089bSToby Isaac ierr = DMForestSetGradeFactor(*tdm,factor);CHKERRQ(ierr); 1603e58adeeSToby Isaac ierr = DMForestGetBaseCoordinateMapping(dm,&map,&mapCtx);CHKERRQ(ierr); 1615e8c540aSToby Isaac ierr = DMForestSetBaseCoordinateMapping(*tdm,map,mapCtx);CHKERRQ(ierr); 162a0452a8eSToby Isaac if (forest->ftemplate) { 16320e8089bSToby Isaac ierr = (forest->ftemplate)(dm, *tdm);CHKERRQ(ierr); 164a0452a8eSToby Isaac } 16520e8089bSToby Isaac ierr = DMForestSetAdaptivityForest(*tdm,dm);CHKERRQ(ierr); 166795844e7SToby Isaac ierr = DMGetDS(dm,&ds);CHKERRQ(ierr); 167795844e7SToby Isaac ierr = DMSetDS(*tdm,ds);CHKERRQ(ierr); 168795844e7SToby Isaac ierr = DMGetApplicationContext(dm,&ctx);CHKERRQ(ierr); 169795844e7SToby Isaac ierr = DMSetApplicationContext(*tdm,&ctx);CHKERRQ(ierr); 17090b157c4SStefano Zampini { 17190b157c4SStefano Zampini PetscBool isper; 172795844e7SToby Isaac const PetscReal *maxCell, *L; 173795844e7SToby Isaac const DMBoundaryType *bd; 174795844e7SToby Isaac 17590b157c4SStefano Zampini ierr = DMGetPeriodicity(dm,&isper,&maxCell,&L,&bd);CHKERRQ(ierr); 17690b157c4SStefano Zampini ierr = DMSetPeriodicity(*tdm,isper,maxCell,L,bd);CHKERRQ(ierr); 177795844e7SToby Isaac } 178bff67a9bSToby Isaac ierr = DMCopyBoundary(dm,*tdm);CHKERRQ(ierr); 179a0452a8eSToby Isaac PetscFunctionReturn(0); 180a0452a8eSToby Isaac } 181a0452a8eSToby Isaac 18201d9d024SToby Isaac static PetscErrorCode DMInitialize_Forest(DM dm); 18301d9d024SToby Isaac 184db4d5e8cSToby Isaac PETSC_EXTERN PetscErrorCode DMClone_Forest(DM dm, DM *newdm) 185db4d5e8cSToby Isaac { 186db4d5e8cSToby Isaac DM_Forest *forest = (DM_Forest*) dm->data; 187db4d5e8cSToby Isaac const char *type; 188db4d5e8cSToby Isaac PetscErrorCode ierr; 189db4d5e8cSToby Isaac 190db4d5e8cSToby Isaac PetscFunctionBegin; 191db4d5e8cSToby Isaac forest->refct++; 192db4d5e8cSToby Isaac (*newdm)->data = forest; 193db4d5e8cSToby Isaac ierr = PetscObjectGetType((PetscObject) dm, &type);CHKERRQ(ierr); 194db4d5e8cSToby Isaac ierr = PetscObjectChangeTypeName((PetscObject) *newdm, type);CHKERRQ(ierr); 19501d9d024SToby Isaac ierr = DMInitialize_Forest(*newdm);CHKERRQ(ierr); 196db4d5e8cSToby Isaac PetscFunctionReturn(0); 197db4d5e8cSToby Isaac } 198db4d5e8cSToby Isaac 199d222f98bSToby Isaac static PetscErrorCode DMDestroy_Forest(DM dm) 200db4d5e8cSToby Isaac { 201db4d5e8cSToby Isaac DM_Forest *forest = (DM_Forest*) dm->data; 202db4d5e8cSToby Isaac PetscErrorCode ierr; 203db4d5e8cSToby Isaac 204db4d5e8cSToby Isaac PetscFunctionBegin; 205db4d5e8cSToby Isaac if (--forest->refct > 0) PetscFunctionReturn(0); 206d222f98bSToby Isaac if (forest->destroy) {ierr = forest->destroy(dm);CHKERRQ(ierr);} 207db4d5e8cSToby Isaac ierr = PetscSFDestroy(&forest->cellSF);CHKERRQ(ierr); 2080f17b9e3SToby Isaac ierr = PetscSFDestroy(&forest->preCoarseToFine);CHKERRQ(ierr); 2090f17b9e3SToby Isaac ierr = PetscSFDestroy(&forest->coarseToPreFine);CHKERRQ(ierr); 210a1b0c543SToby Isaac ierr = DMLabelDestroy(&forest->adaptLabel);CHKERRQ(ierr); 2119a81d013SToby Isaac ierr = PetscFree(forest->adaptStrategy);CHKERRQ(ierr); 21256ba9f64SToby Isaac ierr = DMDestroy(&forest->base);CHKERRQ(ierr); 213ba936b91SToby Isaac ierr = DMDestroy(&forest->adapt);CHKERRQ(ierr); 21430f902e7SToby Isaac ierr = PetscFree(forest->topology);CHKERRQ(ierr); 21530f902e7SToby Isaac ierr = PetscFree(forest);CHKERRQ(ierr); 216db4d5e8cSToby Isaac PetscFunctionReturn(0); 217db4d5e8cSToby Isaac } 218db4d5e8cSToby Isaac 2199be51f97SToby Isaac /*@C 2209be51f97SToby Isaac DMForestSetTopology - Set the topology of a DMForest during the pre-setup phase. The topology is a string (e.g. 22168d54884SBarry Smith "cube", "shell") and can be interpreted by subtypes of DMFOREST) to construct the base DM of a forest during 2229be51f97SToby Isaac DMSetUp(). 2239be51f97SToby Isaac 2249be51f97SToby Isaac Logically collective on dm 2259be51f97SToby Isaac 2269be51f97SToby Isaac Input parameters: 2279be51f97SToby Isaac + dm - the forest 2289be51f97SToby Isaac - topology - the topology of the forest 2299be51f97SToby Isaac 2309be51f97SToby Isaac Level: intermediate 2319be51f97SToby Isaac 2329be51f97SToby Isaac .seealso(): DMForestGetTopology(), DMForestSetBaseDM() 2339be51f97SToby Isaac @*/ 234dd8e54a2SToby Isaac PetscErrorCode DMForestSetTopology(DM dm, DMForestTopology topology) 235db4d5e8cSToby Isaac { 236db4d5e8cSToby Isaac DM_Forest *forest = (DM_Forest*) dm->data; 237db4d5e8cSToby Isaac PetscErrorCode ierr; 238db4d5e8cSToby Isaac 239db4d5e8cSToby Isaac PetscFunctionBegin; 240db4d5e8cSToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 241ef51cf95SToby Isaac if (dm->setupcalled) SETERRQ(PetscObjectComm((PetscObject)dm),PETSC_ERR_ARG_WRONGSTATE,"Cannot change the topology after setup"); 242dd8e54a2SToby Isaac ierr = PetscFree(forest->topology);CHKERRQ(ierr); 243dd8e54a2SToby Isaac ierr = PetscStrallocpy((const char*)topology,(char**) &forest->topology);CHKERRQ(ierr); 244db4d5e8cSToby Isaac PetscFunctionReturn(0); 245db4d5e8cSToby Isaac } 246db4d5e8cSToby Isaac 2479be51f97SToby Isaac /*@C 2489be51f97SToby Isaac DMForestGetTopology - Get a string describing the topology of a DMForest. 2499be51f97SToby Isaac 2509be51f97SToby Isaac Not collective 2519be51f97SToby Isaac 2529be51f97SToby Isaac Input parameter: 2539be51f97SToby Isaac . dm - the forest 2549be51f97SToby Isaac 2559be51f97SToby Isaac Output parameter: 2569be51f97SToby Isaac . topology - the topology of the forest (e.g., 'cube', 'shell') 2579be51f97SToby Isaac 2589be51f97SToby Isaac Level: intermediate 2599be51f97SToby Isaac 2609be51f97SToby Isaac .seealso: DMForestSetTopology() 2619be51f97SToby Isaac @*/ 262dd8e54a2SToby Isaac PetscErrorCode DMForestGetTopology(DM dm, DMForestTopology *topology) 263dd8e54a2SToby Isaac { 264dd8e54a2SToby Isaac DM_Forest *forest = (DM_Forest*) dm->data; 265dd8e54a2SToby Isaac 266dd8e54a2SToby Isaac PetscFunctionBegin; 267dd8e54a2SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 268dd8e54a2SToby Isaac PetscValidPointer(topology,2); 269dd8e54a2SToby Isaac *topology = forest->topology; 270dd8e54a2SToby Isaac PetscFunctionReturn(0); 271dd8e54a2SToby Isaac } 272dd8e54a2SToby Isaac 2739be51f97SToby Isaac /*@ 2749be51f97SToby Isaac DMForestSetBaseDM - During the pre-setup phase, set the DM that defines the base mesh of a DMForest forest. The 2759be51f97SToby Isaac forest will be hierarchically refined from the base, and all refinements/coarsenings of the forest will share its 276765b024eSBarry Smith base. In general, two forest must share a base to be comparable, to do things like construct interpolators. 2779be51f97SToby Isaac 2789be51f97SToby Isaac Logically collective on dm 2799be51f97SToby Isaac 2809be51f97SToby Isaac Input Parameters: 2819be51f97SToby Isaac + dm - the forest 2829be51f97SToby Isaac - base - the base DM of the forest 2839be51f97SToby Isaac 284765b024eSBarry Smith Notes: Currently the base DM must be a DMPLEX 285765b024eSBarry Smith 2869be51f97SToby Isaac Level: intermediate 2879be51f97SToby Isaac 2889be51f97SToby Isaac .seealso(): DMForestGetBaseDM() 2899be51f97SToby Isaac @*/ 290dd8e54a2SToby Isaac PetscErrorCode DMForestSetBaseDM(DM dm, DM base) 291dd8e54a2SToby Isaac { 292dd8e54a2SToby Isaac DM_Forest *forest = (DM_Forest*) dm->data; 293dd8e54a2SToby Isaac PetscInt dim, dimEmbed; 294dd8e54a2SToby Isaac PetscErrorCode ierr; 295dd8e54a2SToby Isaac 296dd8e54a2SToby Isaac PetscFunctionBegin; 297dd8e54a2SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 298ef51cf95SToby Isaac if (dm->setupcalled) SETERRQ(PetscObjectComm((PetscObject)dm),PETSC_ERR_ARG_WRONGSTATE,"Cannot change the base after setup"); 299dd8e54a2SToby Isaac ierr = PetscObjectReference((PetscObject)base);CHKERRQ(ierr); 300dd8e54a2SToby Isaac ierr = DMDestroy(&forest->base);CHKERRQ(ierr); 301dd8e54a2SToby Isaac forest->base = base; 302a0452a8eSToby Isaac if (base) { 303a0452a8eSToby Isaac PetscValidHeaderSpecific(base, DM_CLASSID, 2); 304dd8e54a2SToby Isaac ierr = DMGetDimension(base,&dim);CHKERRQ(ierr); 305dd8e54a2SToby Isaac ierr = DMSetDimension(dm,dim);CHKERRQ(ierr); 306dd8e54a2SToby Isaac ierr = DMGetCoordinateDim(base,&dimEmbed);CHKERRQ(ierr); 307dd8e54a2SToby Isaac ierr = DMSetCoordinateDim(dm,dimEmbed);CHKERRQ(ierr); 308a0452a8eSToby Isaac } 309dd8e54a2SToby Isaac PetscFunctionReturn(0); 310dd8e54a2SToby Isaac } 311dd8e54a2SToby Isaac 3129be51f97SToby Isaac /*@ 3139be51f97SToby Isaac DMForestGetBaseDM - Get the base DM of a DMForest forest. The forest will be hierarchically refined from the base, 31468d54884SBarry Smith and all refinements/coarsenings of the forest will share its base. In general, two forest must share a base to be 3159be51f97SToby Isaac comparable, to do things like construct interpolators. 3169be51f97SToby Isaac 3179be51f97SToby Isaac Not collective 3189be51f97SToby Isaac 3199be51f97SToby Isaac Input Parameter: 3209be51f97SToby Isaac . dm - the forest 3219be51f97SToby Isaac 3229be51f97SToby Isaac Output Parameter: 3239be51f97SToby Isaac . base - the base DM of the forest 3249be51f97SToby Isaac 3259be51f97SToby Isaac Level: intermediate 3269be51f97SToby Isaac 3279be51f97SToby Isaac .seealso(); DMForestSetBaseDM() 3289be51f97SToby Isaac @*/ 329dd8e54a2SToby Isaac PetscErrorCode DMForestGetBaseDM(DM dm, DM *base) 330dd8e54a2SToby Isaac { 331dd8e54a2SToby Isaac DM_Forest *forest = (DM_Forest*) dm->data; 332dd8e54a2SToby Isaac 333dd8e54a2SToby Isaac PetscFunctionBegin; 334dd8e54a2SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 335dd8e54a2SToby Isaac PetscValidPointer(base, 2); 336dd8e54a2SToby Isaac *base = forest->base; 337dd8e54a2SToby Isaac PetscFunctionReturn(0); 338dd8e54a2SToby Isaac } 339dd8e54a2SToby Isaac 34099478f86SToby Isaac PetscErrorCode DMForestSetBaseCoordinateMapping(DM dm, PetscErrorCode (*func)(DM,PetscInt,PetscInt,const PetscReal [],PetscReal [],void*),void *ctx) 341cf38a08cSToby Isaac { 342cf38a08cSToby Isaac DM_Forest *forest = (DM_Forest*) dm->data; 343cf38a08cSToby Isaac 344cf38a08cSToby Isaac PetscFunctionBegin; 345cf38a08cSToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 346cf38a08cSToby Isaac forest->mapcoordinates = func; 347cf38a08cSToby Isaac forest->mapcoordinatesctx = ctx; 348cf38a08cSToby Isaac PetscFunctionReturn(0); 349cf38a08cSToby Isaac } 350cf38a08cSToby Isaac 35199478f86SToby Isaac PetscErrorCode DMForestGetBaseCoordinateMapping(DM dm, PetscErrorCode (**func) (DM,PetscInt,PetscInt,const PetscReal [],PetscReal [],void*),void *ctx) 352cf38a08cSToby Isaac { 353cf38a08cSToby Isaac DM_Forest *forest = (DM_Forest*) dm->data; 354cf38a08cSToby Isaac 355cf38a08cSToby Isaac PetscFunctionBegin; 356cf38a08cSToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 357cf38a08cSToby Isaac if (func) *func = forest->mapcoordinates; 358cf38a08cSToby Isaac if (ctx) *((void**) ctx) = forest->mapcoordinatesctx; 359cf38a08cSToby Isaac PetscFunctionReturn(0); 360cf38a08cSToby Isaac } 361cf38a08cSToby Isaac 3629be51f97SToby Isaac /*@ 3639be51f97SToby Isaac DMForestSetAdaptivityForest - During the pre-setup phase, set the forest from which the current forest will be 3649be51f97SToby Isaac adapted (e.g., the current forest will be refined/coarsened/repartitioned from it) im DMSetUp(). Usually not needed 3659be51f97SToby Isaac by users directly: DMForestTemplate() constructs a new forest to be adapted from an old forest and calls this 3669be51f97SToby Isaac routine. 3679be51f97SToby Isaac 368dffe73a3SToby Isaac Note that this can be called after setup with adapt = NULL, which will clear all internal data related to the 369dffe73a3SToby Isaac adaptivity forest from dm. This way, repeatedly adapting does not leave stale DM objects in memory. 370dffe73a3SToby Isaac 3719be51f97SToby Isaac Logically collective on dm 3729be51f97SToby Isaac 3739be51f97SToby Isaac Input Parameter: 3749be51f97SToby Isaac + dm - the new forest, which will be constructed from adapt 3759be51f97SToby Isaac - adapt - the old forest 3769be51f97SToby Isaac 3779be51f97SToby Isaac Level: intermediate 3789be51f97SToby Isaac 3799be51f97SToby Isaac .seealso: DMForestGetAdaptivityForest(), DMForestSetAdaptivityPurpose() 3809be51f97SToby Isaac @*/ 381ba936b91SToby Isaac PetscErrorCode DMForestSetAdaptivityForest(DM dm,DM adapt) 382dd8e54a2SToby Isaac { 383dffe73a3SToby Isaac DM_Forest *forest, *adaptForest, *oldAdaptForest; 384dffe73a3SToby Isaac DM oldAdapt; 385*456cc5b7SMatthew G. Knepley PetscBool isForest; 386dd8e54a2SToby Isaac PetscErrorCode ierr; 387dd8e54a2SToby Isaac 388dd8e54a2SToby Isaac PetscFunctionBegin; 389dd8e54a2SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 390ba936b91SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 2); 391*456cc5b7SMatthew G. Knepley ierr = DMIsForest(dm, &isForest);CHKERRQ(ierr); 392*456cc5b7SMatthew G. Knepley if (!isForest) PetscFunctionReturn(0); 393ba936b91SToby Isaac forest = (DM_Forest*) dm->data; 394dffe73a3SToby Isaac ierr = DMForestGetAdaptivityForest(dm,&oldAdapt);CHKERRQ(ierr); 395dffe73a3SToby Isaac if (adapt != NULL && dm->setupcalled) SETERRQ(PetscObjectComm((PetscObject)dm),PETSC_ERR_ARG_WRONGSTATE,"Cannot change the adaptation forest after setup"); 396193eb951SToby Isaac adaptForest = (DM_Forest*) (adapt ? adapt->data : NULL); 397193eb951SToby Isaac oldAdaptForest = (DM_Forest*) (oldAdapt ? oldAdapt->data : NULL); 398dffe73a3SToby Isaac if (adaptForest != oldAdaptForest) { 399dffe73a3SToby Isaac ierr = PetscSFDestroy(&forest->preCoarseToFine);CHKERRQ(ierr); 400dffe73a3SToby Isaac ierr = PetscSFDestroy(&forest->coarseToPreFine);CHKERRQ(ierr); 401dffe73a3SToby Isaac if (forest->clearadaptivityforest) {ierr = (forest->clearadaptivityforest)(dm);CHKERRQ(ierr);} 402dffe73a3SToby Isaac } 40326d9498aSToby Isaac switch (forest->adaptPurpose) { 404cd3c525cSToby Isaac case DM_ADAPT_DETERMINE: 405ba936b91SToby Isaac ierr = PetscObjectReference((PetscObject)adapt);CHKERRQ(ierr); 406ba936b91SToby Isaac ierr = DMDestroy(&(forest->adapt));CHKERRQ(ierr); 407ba936b91SToby Isaac forest->adapt = adapt; 40826d9498aSToby Isaac break; 409a1b0c543SToby Isaac case DM_ADAPT_REFINE: 41026d9498aSToby Isaac ierr = DMSetCoarseDM(dm,adapt);CHKERRQ(ierr); 41126d9498aSToby Isaac break; 412a1b0c543SToby Isaac case DM_ADAPT_COARSEN: 41326d9498aSToby Isaac ierr = DMSetFineDM(dm,adapt);CHKERRQ(ierr); 41426d9498aSToby Isaac break; 41526d9498aSToby Isaac default: 41626d9498aSToby Isaac SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"invalid adaptivity purpose"); 41726d9498aSToby Isaac } 418dd8e54a2SToby Isaac PetscFunctionReturn(0); 419dd8e54a2SToby Isaac } 420dd8e54a2SToby Isaac 4219be51f97SToby Isaac /*@ 4229be51f97SToby Isaac DMForestGetAdaptivityForest - Get the forest from which the current forest is adapted. 4239be51f97SToby Isaac 4249be51f97SToby Isaac Not collective 4259be51f97SToby Isaac 4269be51f97SToby Isaac Input Parameter: 4279be51f97SToby Isaac . dm - the forest 4289be51f97SToby Isaac 4299be51f97SToby Isaac Output Parameter: 4309be51f97SToby Isaac . adapt - the forest from which dm is/was adapted 4319be51f97SToby Isaac 4329be51f97SToby Isaac Level: intermediate 4339be51f97SToby Isaac 4349be51f97SToby Isaac .seealso: DMForestSetAdaptivityForest(), DMForestSetAdaptivityPurpose() 4359be51f97SToby Isaac @*/ 436ba936b91SToby Isaac PetscErrorCode DMForestGetAdaptivityForest(DM dm, DM *adapt) 437dd8e54a2SToby Isaac { 438ba936b91SToby Isaac DM_Forest *forest; 43926d9498aSToby Isaac PetscErrorCode ierr; 440dd8e54a2SToby Isaac 441dd8e54a2SToby Isaac PetscFunctionBegin; 442dd8e54a2SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 443ba936b91SToby Isaac forest = (DM_Forest*) dm->data; 44426d9498aSToby Isaac switch (forest->adaptPurpose) { 445cd3c525cSToby Isaac case DM_ADAPT_DETERMINE: 446ba936b91SToby Isaac *adapt = forest->adapt; 44726d9498aSToby Isaac break; 448a1b0c543SToby Isaac case DM_ADAPT_REFINE: 44926d9498aSToby Isaac ierr = DMGetCoarseDM(dm,adapt);CHKERRQ(ierr); 45026d9498aSToby Isaac break; 451a1b0c543SToby Isaac case DM_ADAPT_COARSEN: 45226d9498aSToby Isaac ierr = DMGetFineDM(dm,adapt);CHKERRQ(ierr); 45326d9498aSToby Isaac break; 45426d9498aSToby Isaac default: 45526d9498aSToby Isaac SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"invalid adaptivity purpose"); 45626d9498aSToby Isaac } 45726d9498aSToby Isaac PetscFunctionReturn(0); 45826d9498aSToby Isaac } 45926d9498aSToby Isaac 4609be51f97SToby Isaac /*@ 4619be51f97SToby Isaac DMForestSetAdaptivityPurpose - During the pre-setup phase, set whether the current DM is being adapted from its 462a1b0c543SToby Isaac source (set with DMForestSetAdaptivityForest()) for the purpose of refinement (DM_ADAPT_REFINE), coarsening 463cd3c525cSToby Isaac (DM_ADAPT_COARSEN), or undefined (DM_ADAPT_DETERMINE). This only matters for the purposes of reference counting: 4649be51f97SToby Isaac during DMDestroy(), cyclic references can be found between DMs only if the cyclic reference is due to a fine/coarse 4659be51f97SToby Isaac relationship (see DMSetFineDM()/DMSetCoarseDM()). If the purpose is not refinement or coarsening, and the user does 4669be51f97SToby Isaac not maintain a reference to the post-adaptation forest (i.e., the one created by DMForestTemplate()), then this can 4679be51f97SToby Isaac cause a memory leak. This method is used by subtypes of DMForest when automatically constructing mesh hierarchies. 4689be51f97SToby Isaac 4699be51f97SToby Isaac Logically collective on dm 4709be51f97SToby Isaac 4719be51f97SToby Isaac Input Parameters: 4729be51f97SToby Isaac + dm - the forest 473cd3c525cSToby Isaac - purpose - the adaptivity purpose (DM_ADAPT_DETERMINE/DM_ADAPT_REFINE/DM_ADAPT_COARSEN) 4749be51f97SToby Isaac 4759be51f97SToby Isaac Level: advanced 4769be51f97SToby Isaac 4779be51f97SToby Isaac .seealso: DMForestTemplate(), DMForestSetAdaptivityForest(), DMForestGetAdaptivityForest() 4789be51f97SToby Isaac @*/ 479a1b0c543SToby Isaac PetscErrorCode DMForestSetAdaptivityPurpose(DM dm, DMAdaptFlag purpose) 48026d9498aSToby Isaac { 48126d9498aSToby Isaac DM_Forest *forest; 48226d9498aSToby Isaac PetscErrorCode ierr; 48326d9498aSToby Isaac 48426d9498aSToby Isaac PetscFunctionBegin; 48526d9498aSToby Isaac forest = (DM_Forest*) dm->data; 4869be51f97SToby Isaac if (dm->setupcalled) SETERRQ(PetscObjectComm((PetscObject)dm),PETSC_ERR_ARG_WRONGSTATE,"Cannot change the adaptation forest after setup"); 48726d9498aSToby Isaac if (purpose != forest->adaptPurpose) { 48826d9498aSToby Isaac DM adapt; 48926d9498aSToby Isaac 49026d9498aSToby Isaac ierr = DMForestGetAdaptivityForest(dm,&adapt);CHKERRQ(ierr); 49126d9498aSToby Isaac ierr = PetscObjectReference((PetscObject)adapt);CHKERRQ(ierr); 49226d9498aSToby Isaac ierr = DMForestSetAdaptivityForest(dm,NULL);CHKERRQ(ierr); 493f885a11aSToby Isaac 49426d9498aSToby Isaac forest->adaptPurpose = purpose; 495f885a11aSToby Isaac 49626d9498aSToby Isaac ierr = DMForestSetAdaptivityForest(dm,adapt);CHKERRQ(ierr); 49726d9498aSToby Isaac ierr = DMDestroy(&adapt);CHKERRQ(ierr); 49826d9498aSToby Isaac } 499dd8e54a2SToby Isaac PetscFunctionReturn(0); 500dd8e54a2SToby Isaac } 501dd8e54a2SToby Isaac 50256c0450aSToby Isaac /*@ 50356c0450aSToby Isaac DMForestGetAdaptivityPurpose - Get whether the current DM is being adapted from its source (set with 504a1b0c543SToby Isaac DMForestSetAdaptivityForest()) for the purpose of refinement (DM_ADAPT_REFINE), coarsening (DM_ADAPT_COARSEN), or 505cd3c525cSToby Isaac undefined (DM_ADAPT_DETERMINE). This only matters for the purposes of reference counting: during DMDestroy(), cyclic 50656c0450aSToby Isaac references can be found between DMs only if the cyclic reference is due to a fine/coarse relationship (see 50756c0450aSToby Isaac DMSetFineDM()/DMSetCoarseDM()). If the purpose is not refinement or coarsening, and the user does not maintain a 50856c0450aSToby Isaac reference to the post-adaptation forest (i.e., the one created by DMForestTemplate()), then this can cause a memory 50956c0450aSToby Isaac leak. This method is used by subtypes of DMForest when automatically constructing mesh hierarchies. 51056c0450aSToby Isaac 51156c0450aSToby Isaac Not collective 51256c0450aSToby Isaac 51356c0450aSToby Isaac Input Parameter: 51456c0450aSToby Isaac . dm - the forest 51556c0450aSToby Isaac 51656c0450aSToby Isaac Output Parameter: 517cd3c525cSToby Isaac . purpose - the adaptivity purpose (DM_ADAPT_DETERMINE/DM_ADAPT_REFINE/DM_ADAPT_COARSEN) 51856c0450aSToby Isaac 51956c0450aSToby Isaac Level: advanced 52056c0450aSToby Isaac 52156c0450aSToby Isaac .seealso: DMForestTemplate(), DMForestSetAdaptivityForest(), DMForestGetAdaptivityForest() 52256c0450aSToby Isaac @*/ 523a1b0c543SToby Isaac PetscErrorCode DMForestGetAdaptivityPurpose(DM dm, DMAdaptFlag *purpose) 52456c0450aSToby Isaac { 52556c0450aSToby Isaac DM_Forest *forest; 52656c0450aSToby Isaac 52756c0450aSToby Isaac PetscFunctionBegin; 52856c0450aSToby Isaac forest = (DM_Forest*) dm->data; 52956c0450aSToby Isaac *purpose = forest->adaptPurpose; 53056c0450aSToby Isaac PetscFunctionReturn(0); 53156c0450aSToby Isaac } 53256c0450aSToby Isaac 5339be51f97SToby Isaac /*@ 5349be51f97SToby Isaac DMForestSetAdjacencyDimension - During the pre-setup phase, set the dimension of interface points that determine 5359be51f97SToby Isaac cell adjacency (for the purposes of partitioning and overlap). 5369be51f97SToby Isaac 5379be51f97SToby Isaac Logically collective on dm 5389be51f97SToby Isaac 5399be51f97SToby Isaac Input Parameters: 5409be51f97SToby Isaac + dm - the forest 5419be51f97SToby Isaac - adjDim - default 0 (i.e., vertices determine adjacency) 5429be51f97SToby Isaac 5439be51f97SToby Isaac Level: intermediate 5449be51f97SToby Isaac 5459be51f97SToby Isaac .seealso: DMForestGetAdjacencyDimension(), DMForestSetAdjacencyCodimension(), DMForestSetPartitionOverlap() 5469be51f97SToby Isaac @*/ 547dd8e54a2SToby Isaac PetscErrorCode DMForestSetAdjacencyDimension(DM dm, PetscInt adjDim) 548dd8e54a2SToby Isaac { 549dd8e54a2SToby Isaac PetscInt dim; 550dd8e54a2SToby Isaac DM_Forest *forest = (DM_Forest*) dm->data; 551dd8e54a2SToby Isaac PetscErrorCode ierr; 552dd8e54a2SToby Isaac 553dd8e54a2SToby Isaac PetscFunctionBegin; 554dd8e54a2SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 555ef51cf95SToby Isaac if (dm->setupcalled) SETERRQ(PetscObjectComm((PetscObject)dm),PETSC_ERR_ARG_WRONGSTATE,"Cannot change the adjacency dimension after setup"); 556dd8e54a2SToby Isaac if (adjDim < 0) SETERRQ1(PetscObjectComm((PetscObject)dm),PETSC_ERR_ARG_OUTOFRANGE,"adjacency dim cannot be < 0: %d", adjDim); 557dd8e54a2SToby Isaac ierr = DMGetDimension(dm,&dim);CHKERRQ(ierr); 558dd8e54a2SToby Isaac if (adjDim > dim) SETERRQ2(PetscObjectComm((PetscObject)dm),PETSC_ERR_ARG_OUTOFRANGE,"adjacency dim cannot be > %d: %d", dim, adjDim); 559dd8e54a2SToby Isaac forest->adjDim = adjDim; 560dd8e54a2SToby Isaac PetscFunctionReturn(0); 561dd8e54a2SToby Isaac } 562dd8e54a2SToby Isaac 5639be51f97SToby Isaac /*@ 5649be51f97SToby Isaac DMForestSetAdjacencyCodimension - Like DMForestSetAdjacencyDimension(), but specified as a co-dimension (so that, 5659be51f97SToby Isaac e.g., adjacency based on facets can be specified by codimension 1 in all cases) 5669be51f97SToby Isaac 5679be51f97SToby Isaac Logically collective on dm 5689be51f97SToby Isaac 5699be51f97SToby Isaac Input Parameters: 5709be51f97SToby Isaac + dm - the forest 5719be51f97SToby Isaac - adjCodim - default isthe dimension of the forest (see DMGetDimension()), since this is the codimension of vertices 5729be51f97SToby Isaac 5739be51f97SToby Isaac Level: intermediate 5749be51f97SToby Isaac 5759be51f97SToby Isaac .seealso: DMForestGetAdjacencyCodimension(), DMForestSetAdjacencyDimension() 5769be51f97SToby Isaac @*/ 577dd8e54a2SToby Isaac PetscErrorCode DMForestSetAdjacencyCodimension(DM dm, PetscInt adjCodim) 578dd8e54a2SToby Isaac { 579dd8e54a2SToby Isaac PetscInt dim; 580dd8e54a2SToby Isaac PetscErrorCode ierr; 581dd8e54a2SToby Isaac 582dd8e54a2SToby Isaac PetscFunctionBegin; 583dd8e54a2SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 584dd8e54a2SToby Isaac ierr = DMGetDimension(dm,&dim);CHKERRQ(ierr); 585dd8e54a2SToby Isaac ierr = DMForestSetAdjacencyDimension(dm,dim-adjCodim);CHKERRQ(ierr); 586dd8e54a2SToby Isaac PetscFunctionReturn(0); 587dd8e54a2SToby Isaac } 588dd8e54a2SToby Isaac 5899be51f97SToby Isaac /*@ 5909be51f97SToby Isaac DMForestGetAdjacencyDimension - Get the dimension of interface points that determine cell adjacency (for the 5919be51f97SToby Isaac purposes of partitioning and overlap). 5929be51f97SToby Isaac 5939be51f97SToby Isaac Not collective 5949be51f97SToby Isaac 5959be51f97SToby Isaac Input Parameter: 5969be51f97SToby Isaac . dm - the forest 5979be51f97SToby Isaac 5989be51f97SToby Isaac Output Parameter: 5999be51f97SToby Isaac . adjDim - default 0 (i.e., vertices determine adjacency) 6009be51f97SToby Isaac 6019be51f97SToby Isaac Level: intermediate 6029be51f97SToby Isaac 6039be51f97SToby Isaac .seealso: DMForestSetAdjacencyDimension(), DMForestGetAdjacencyCodimension(), DMForestSetPartitionOverlap() 6049be51f97SToby Isaac @*/ 605dd8e54a2SToby Isaac PetscErrorCode DMForestGetAdjacencyDimension(DM dm, PetscInt *adjDim) 606dd8e54a2SToby Isaac { 607dd8e54a2SToby Isaac DM_Forest *forest = (DM_Forest*) dm->data; 608dd8e54a2SToby Isaac 609dd8e54a2SToby Isaac PetscFunctionBegin; 610dd8e54a2SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 611dd8e54a2SToby Isaac PetscValidIntPointer(adjDim,2); 612dd8e54a2SToby Isaac *adjDim = forest->adjDim; 613dd8e54a2SToby Isaac PetscFunctionReturn(0); 614dd8e54a2SToby Isaac } 615dd8e54a2SToby Isaac 6169be51f97SToby Isaac /*@ 6179be51f97SToby Isaac DMForestGetAdjacencyCodimension - Like DMForestGetAdjacencyDimension(), but specified as a co-dimension (so that, 6189be51f97SToby Isaac e.g., adjacency based on facets can be specified by codimension 1 in all cases) 6199be51f97SToby Isaac 6209be51f97SToby Isaac Not collective 6219be51f97SToby Isaac 6229be51f97SToby Isaac Input Parameter: 6239be51f97SToby Isaac . dm - the forest 6249be51f97SToby Isaac 6259be51f97SToby Isaac Output Parameter: 6269be51f97SToby Isaac . adjCodim - default isthe dimension of the forest (see DMGetDimension()), since this is the codimension of vertices 6279be51f97SToby Isaac 6289be51f97SToby Isaac Level: intermediate 6299be51f97SToby Isaac 6309be51f97SToby Isaac .seealso: DMForestSetAdjacencyCodimension(), DMForestGetAdjacencyDimension() 6319be51f97SToby Isaac @*/ 632dd8e54a2SToby Isaac PetscErrorCode DMForestGetAdjacencyCodimension(DM dm, PetscInt *adjCodim) 633dd8e54a2SToby Isaac { 634dd8e54a2SToby Isaac DM_Forest *forest = (DM_Forest*) dm->data; 635dd8e54a2SToby Isaac PetscInt dim; 636dd8e54a2SToby Isaac PetscErrorCode ierr; 637dd8e54a2SToby Isaac 638dd8e54a2SToby Isaac PetscFunctionBegin; 639dd8e54a2SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 640dd8e54a2SToby Isaac PetscValidIntPointer(adjCodim,2); 641dd8e54a2SToby Isaac ierr = DMGetDimension(dm,&dim);CHKERRQ(ierr); 642dd8e54a2SToby Isaac *adjCodim = dim - forest->adjDim; 643dd8e54a2SToby Isaac PetscFunctionReturn(0); 644dd8e54a2SToby Isaac } 645dd8e54a2SToby Isaac 6469be51f97SToby Isaac /*@ 6479be51f97SToby Isaac DMForestSetPartitionOverlap - During the pre-setup phase, set the amount of cell-overlap present in parallel 6489be51f97SToby Isaac partitions of a forest, with values > 0 indicating subdomains that are expanded by that many iterations of adding 6499be51f97SToby Isaac adjacent cells 6509be51f97SToby Isaac 6519be51f97SToby Isaac Logically collective on dm 6529be51f97SToby Isaac 6539be51f97SToby Isaac Input Parameters: 6549be51f97SToby Isaac + dm - the forest 6559be51f97SToby Isaac - overlap - default 0 6569be51f97SToby Isaac 6579be51f97SToby Isaac Level: intermediate 6589be51f97SToby Isaac 6599be51f97SToby Isaac .seealso: DMForestGetPartitionOverlap(), DMForestSetAdjacencyDimension(), DMForestSetAdjacencyCodimension() 6609be51f97SToby Isaac @*/ 661dd8e54a2SToby Isaac PetscErrorCode DMForestSetPartitionOverlap(DM dm, PetscInt overlap) 662dd8e54a2SToby Isaac { 663dd8e54a2SToby Isaac DM_Forest *forest = (DM_Forest*) dm->data; 664dd8e54a2SToby Isaac 665dd8e54a2SToby Isaac PetscFunctionBegin; 666dd8e54a2SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 667ef51cf95SToby Isaac if (dm->setupcalled) SETERRQ(PetscObjectComm((PetscObject)dm),PETSC_ERR_ARG_WRONGSTATE,"Cannot change the overlap after setup"); 668dd8e54a2SToby Isaac if (overlap < 0) SETERRQ1(PetscObjectComm((PetscObject)dm),PETSC_ERR_ARG_OUTOFRANGE,"overlap cannot be < 0: %d", overlap); 669dd8e54a2SToby Isaac forest->overlap = overlap; 670dd8e54a2SToby Isaac PetscFunctionReturn(0); 671dd8e54a2SToby Isaac } 672dd8e54a2SToby Isaac 6739be51f97SToby Isaac /*@ 6749be51f97SToby Isaac DMForestGetPartitionOverlap - Get the amount of cell-overlap present in parallel partitions of a forest, with values 6759be51f97SToby Isaac > 0 indicating subdomains that are expanded by that many iterations of adding adjacent cells 6769be51f97SToby Isaac 6779be51f97SToby Isaac Not collective 6789be51f97SToby Isaac 6799be51f97SToby Isaac Input Parameter: 6809be51f97SToby Isaac . dm - the forest 6819be51f97SToby Isaac 6829be51f97SToby Isaac Output Parameter: 6839be51f97SToby Isaac . overlap - default 0 6849be51f97SToby Isaac 6859be51f97SToby Isaac Level: intermediate 6869be51f97SToby Isaac 6879be51f97SToby Isaac .seealso: DMForestGetPartitionOverlap(), DMForestSetAdjacencyDimension(), DMForestSetAdjacencyCodimension() 6889be51f97SToby Isaac @*/ 689dd8e54a2SToby Isaac PetscErrorCode DMForestGetPartitionOverlap(DM dm, PetscInt *overlap) 690dd8e54a2SToby Isaac { 691dd8e54a2SToby Isaac DM_Forest *forest = (DM_Forest*) dm->data; 692dd8e54a2SToby Isaac 693dd8e54a2SToby Isaac PetscFunctionBegin; 694dd8e54a2SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 695dd8e54a2SToby Isaac PetscValidIntPointer(overlap,2); 696dd8e54a2SToby Isaac *overlap = forest->overlap; 697dd8e54a2SToby Isaac PetscFunctionReturn(0); 698dd8e54a2SToby Isaac } 699dd8e54a2SToby Isaac 7009be51f97SToby Isaac /*@ 7019be51f97SToby Isaac DMForestSetMinimumRefinement - During the pre-setup phase, set the minimum level of refinement (relative to the base 7029be51f97SToby Isaac DM, see DMForestGetBaseDM()) allowed in the forest. If the forest is being created by coarsening a previous forest 7039be51f97SToby Isaac (see DMForestGetAdaptivityForest()) this limits the amount of coarsening. 7049be51f97SToby Isaac 7059be51f97SToby Isaac Logically collective on dm 7069be51f97SToby Isaac 7079be51f97SToby Isaac Input Parameters: 7089be51f97SToby Isaac + dm - the forest 7099be51f97SToby Isaac - minRefinement - default PETSC_DEFAULT (interpreted by the subtype of DMForest) 7109be51f97SToby Isaac 7119be51f97SToby Isaac Level: intermediate 7129be51f97SToby Isaac 7139be51f97SToby Isaac .seealso: DMForestGetMinimumRefinement(), DMForestSetMaximumRefinement(), DMForestSetInitialRefinement(), DMForestGetBaseDM(), DMForestGetAdaptivityForest() 7149be51f97SToby Isaac @*/ 715dd8e54a2SToby Isaac PetscErrorCode DMForestSetMinimumRefinement(DM dm, PetscInt minRefinement) 716dd8e54a2SToby Isaac { 717dd8e54a2SToby Isaac DM_Forest *forest = (DM_Forest*) dm->data; 718dd8e54a2SToby Isaac 719dd8e54a2SToby Isaac PetscFunctionBegin; 720dd8e54a2SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 721ef51cf95SToby Isaac if (dm->setupcalled) SETERRQ(PetscObjectComm((PetscObject)dm),PETSC_ERR_ARG_WRONGSTATE,"Cannot change the minimum refinement after setup"); 722dd8e54a2SToby Isaac forest->minRefinement = minRefinement; 723dd8e54a2SToby Isaac PetscFunctionReturn(0); 724dd8e54a2SToby Isaac } 725dd8e54a2SToby Isaac 7269be51f97SToby Isaac /*@ 7279be51f97SToby Isaac DMForestGetMinimumRefinement - Get the minimum level of refinement (relative to the base DM, see 7289be51f97SToby Isaac DMForestGetBaseDM()) allowed in the forest. If the forest is being created by coarsening a previous forest (see 7299be51f97SToby Isaac DMForestGetAdaptivityForest()), this limits the amount of coarsening. 7309be51f97SToby Isaac 7319be51f97SToby Isaac Not collective 7329be51f97SToby Isaac 7339be51f97SToby Isaac Input Parameter: 7349be51f97SToby Isaac . dm - the forest 7359be51f97SToby Isaac 7369be51f97SToby Isaac Output Parameter: 7379be51f97SToby Isaac . minRefinement - default PETSC_DEFAULT (interpreted by the subtype of DMForest) 7389be51f97SToby Isaac 7399be51f97SToby Isaac Level: intermediate 7409be51f97SToby Isaac 7419be51f97SToby Isaac .seealso: DMForestSetMinimumRefinement(), DMForestGetMaximumRefinement(), DMForestGetInitialRefinement(), DMForestGetBaseDM(), DMForestGetAdaptivityForest() 7429be51f97SToby Isaac @*/ 743dd8e54a2SToby Isaac PetscErrorCode DMForestGetMinimumRefinement(DM dm, PetscInt *minRefinement) 744dd8e54a2SToby Isaac { 745dd8e54a2SToby Isaac DM_Forest *forest = (DM_Forest*) dm->data; 746dd8e54a2SToby Isaac 747dd8e54a2SToby Isaac PetscFunctionBegin; 748dd8e54a2SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 749dd8e54a2SToby Isaac PetscValidIntPointer(minRefinement,2); 750dd8e54a2SToby Isaac *minRefinement = forest->minRefinement; 751dd8e54a2SToby Isaac PetscFunctionReturn(0); 752dd8e54a2SToby Isaac } 753dd8e54a2SToby Isaac 7549be51f97SToby Isaac /*@ 7559be51f97SToby Isaac DMForestSetInitialRefinement - During the pre-setup phase, set the initial level of refinement (relative to the base 7569be51f97SToby Isaac DM, see DMForestGetBaseDM()) allowed in the forest. 7579be51f97SToby Isaac 7589be51f97SToby Isaac Logically collective on dm 7599be51f97SToby Isaac 7609be51f97SToby Isaac Input Parameters: 7619be51f97SToby Isaac + dm - the forest 7629be51f97SToby Isaac - initefinement - default PETSC_DEFAULT (interpreted by the subtype of DMForest) 7639be51f97SToby Isaac 7649be51f97SToby Isaac Level: intermediate 7659be51f97SToby Isaac 7669be51f97SToby Isaac .seealso: DMForestSetMinimumRefinement(), DMForestSetMaximumRefinement(), DMForestGetBaseDM() 7679be51f97SToby Isaac @*/ 76856ba9f64SToby Isaac PetscErrorCode DMForestSetInitialRefinement(DM dm, PetscInt initRefinement) 76956ba9f64SToby Isaac { 77056ba9f64SToby Isaac DM_Forest *forest = (DM_Forest*) dm->data; 77156ba9f64SToby Isaac 77256ba9f64SToby Isaac PetscFunctionBegin; 77356ba9f64SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 77456ba9f64SToby Isaac if (dm->setupcalled) SETERRQ(PetscObjectComm((PetscObject)dm),PETSC_ERR_ARG_WRONGSTATE,"Cannot change the initial refinement after setup"); 77556ba9f64SToby Isaac forest->initRefinement = initRefinement; 77656ba9f64SToby Isaac PetscFunctionReturn(0); 77756ba9f64SToby Isaac } 77856ba9f64SToby Isaac 7799be51f97SToby Isaac /*@ 7809be51f97SToby Isaac DMForestGetInitialRefinement - Get the initial level of refinement (relative to the base DM, see 7819be51f97SToby Isaac DMForestGetBaseDM()) allowed in the forest. 7829be51f97SToby Isaac 7839be51f97SToby Isaac Not collective 7849be51f97SToby Isaac 7859be51f97SToby Isaac Input Parameter: 7869be51f97SToby Isaac . dm - the forest 7879be51f97SToby Isaac 7889be51f97SToby Isaac Output Paramater: 7899be51f97SToby Isaac . initefinement - default PETSC_DEFAULT (interpreted by the subtype of DMForest) 7909be51f97SToby Isaac 7919be51f97SToby Isaac Level: intermediate 7929be51f97SToby Isaac 7939be51f97SToby Isaac .seealso: DMForestSetMinimumRefinement(), DMForestSetMaximumRefinement(), DMForestGetBaseDM() 7949be51f97SToby Isaac @*/ 79556ba9f64SToby Isaac PetscErrorCode DMForestGetInitialRefinement(DM dm, PetscInt *initRefinement) 79656ba9f64SToby Isaac { 79756ba9f64SToby Isaac DM_Forest *forest = (DM_Forest*) dm->data; 79856ba9f64SToby Isaac 79956ba9f64SToby Isaac PetscFunctionBegin; 80056ba9f64SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 80156ba9f64SToby Isaac PetscValidIntPointer(initRefinement,2); 80256ba9f64SToby Isaac *initRefinement = forest->initRefinement; 80356ba9f64SToby Isaac PetscFunctionReturn(0); 80456ba9f64SToby Isaac } 80556ba9f64SToby Isaac 8069be51f97SToby Isaac /*@ 8079be51f97SToby Isaac DMForestSetMaximumRefinement - During the pre-setup phase, set the maximum level of refinement (relative to the base 8089be51f97SToby Isaac DM, see DMForestGetBaseDM()) allowed in the forest. If the forest is being created by refining a previous forest 8099be51f97SToby Isaac (see DMForestGetAdaptivityForest()), this limits the amount of refinement. 8109be51f97SToby Isaac 8119be51f97SToby Isaac Logically collective on dm 8129be51f97SToby Isaac 8139be51f97SToby Isaac Input Parameters: 8149be51f97SToby Isaac + dm - the forest 8159be51f97SToby Isaac - maxRefinement - default PETSC_DEFAULT (interpreted by the subtype of DMForest) 8169be51f97SToby Isaac 8179be51f97SToby Isaac Level: intermediate 8189be51f97SToby Isaac 8199be51f97SToby Isaac .seealso: DMForestGetMinimumRefinement(), DMForestSetMaximumRefinement(), DMForestSetInitialRefinement(), DMForestGetBaseDM(), DMForestGetAdaptivityDM() 8209be51f97SToby Isaac @*/ 821c7eeac06SToby Isaac PetscErrorCode DMForestSetMaximumRefinement(DM dm, PetscInt maxRefinement) 822dd8e54a2SToby Isaac { 823dd8e54a2SToby Isaac DM_Forest *forest = (DM_Forest*) dm->data; 824dd8e54a2SToby Isaac 825dd8e54a2SToby Isaac PetscFunctionBegin; 826dd8e54a2SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 827ef51cf95SToby Isaac if (dm->setupcalled) SETERRQ(PetscObjectComm((PetscObject)dm),PETSC_ERR_ARG_WRONGSTATE,"Cannot change the maximum refinement after setup"); 828c7eeac06SToby Isaac forest->maxRefinement = maxRefinement; 829dd8e54a2SToby Isaac PetscFunctionReturn(0); 830dd8e54a2SToby Isaac } 831dd8e54a2SToby Isaac 8329be51f97SToby Isaac /*@ 8339be51f97SToby Isaac DMForestGetMaximumRefinement - Get the maximum level of refinement (relative to the base DM, see 8349be51f97SToby Isaac DMForestGetBaseDM()) allowed in the forest. If the forest is being created by refining a previous forest (see 8359be51f97SToby Isaac DMForestGetAdaptivityForest()), this limits the amount of refinement. 8369be51f97SToby Isaac 8379be51f97SToby Isaac Not collective 8389be51f97SToby Isaac 8399be51f97SToby Isaac Input Parameter: 8409be51f97SToby Isaac . dm - the forest 8419be51f97SToby Isaac 8429be51f97SToby Isaac Output Parameter: 8439be51f97SToby Isaac . maxRefinement - default PETSC_DEFAULT (interpreted by the subtype of DMForest) 8449be51f97SToby Isaac 8459be51f97SToby Isaac Level: intermediate 8469be51f97SToby Isaac 8479be51f97SToby Isaac .seealso: DMForestSetMaximumRefinement(), DMForestGetMinimumRefinement(), DMForestGetInitialRefinement(), DMForestGetBaseDM(), DMForestGetAdaptivityForest() 8489be51f97SToby Isaac @*/ 849c7eeac06SToby Isaac PetscErrorCode DMForestGetMaximumRefinement(DM dm, PetscInt *maxRefinement) 850dd8e54a2SToby Isaac { 851dd8e54a2SToby Isaac DM_Forest *forest = (DM_Forest*) dm->data; 852dd8e54a2SToby Isaac 853dd8e54a2SToby Isaac PetscFunctionBegin; 854dd8e54a2SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 855c7eeac06SToby Isaac PetscValidIntPointer(maxRefinement,2); 856c7eeac06SToby Isaac *maxRefinement = forest->maxRefinement; 857dd8e54a2SToby Isaac PetscFunctionReturn(0); 858dd8e54a2SToby Isaac } 859c7eeac06SToby Isaac 8609be51f97SToby Isaac /*@C 8619be51f97SToby Isaac DMForestSetAdaptivityStrategy - During the pre-setup phase, set the strategy for combining adaptivity labels from multiple processes. 8629be51f97SToby Isaac Subtypes of DMForest may define their own strategies. Two default strategies are DMFORESTADAPTALL, which indicates that all processes must agree 8639be51f97SToby Isaac for a refinement/coarsening flag to be valid, and DMFORESTADAPTANY, which indicates that only one process needs to 8649be51f97SToby Isaac specify refinement/coarsening. 8659be51f97SToby Isaac 8669be51f97SToby Isaac Logically collective on dm 8679be51f97SToby Isaac 8689be51f97SToby Isaac Input Parameters: 8699be51f97SToby Isaac + dm - the forest 8709be51f97SToby Isaac - adaptStrategy - default DMFORESTADAPTALL 8719be51f97SToby Isaac 8729be51f97SToby Isaac Level: advanced 8739be51f97SToby Isaac 8749be51f97SToby Isaac .seealso: DMForestGetAdaptivityStrategy() 8759be51f97SToby Isaac @*/ 876c7eeac06SToby Isaac PetscErrorCode DMForestSetAdaptivityStrategy(DM dm, DMForestAdaptivityStrategy adaptStrategy) 877c7eeac06SToby Isaac { 878c7eeac06SToby Isaac DM_Forest *forest = (DM_Forest*) dm->data; 879c7eeac06SToby Isaac PetscErrorCode ierr; 880c7eeac06SToby Isaac 881c7eeac06SToby Isaac PetscFunctionBegin; 882c7eeac06SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 883c7eeac06SToby Isaac ierr = PetscFree(forest->adaptStrategy);CHKERRQ(ierr); 884a73e2921SToby Isaac ierr = PetscStrallocpy((const char*) adaptStrategy,(char**)&forest->adaptStrategy);CHKERRQ(ierr); 885c7eeac06SToby Isaac PetscFunctionReturn(0); 886c7eeac06SToby Isaac } 887c7eeac06SToby Isaac 8889be51f97SToby Isaac /*@C 8899be51f97SToby Isaac DMForestSetAdaptivityStrategy - Get the strategy for combining adaptivity labels from multiple processes. Subtypes 8909be51f97SToby Isaac of DMForest may define their own strategies. Two default strategies are DMFORESTADAPTALL, which indicates that all 8919be51f97SToby Isaac processes must agree for a refinement/coarsening flag to be valid, and DMFORESTADAPTANY, which indicates that only 8929be51f97SToby Isaac one process needs to specify refinement/coarsening. 8939be51f97SToby Isaac 8949be51f97SToby Isaac Not collective 8959be51f97SToby Isaac 8969be51f97SToby Isaac Input Parameter: 8979be51f97SToby Isaac . dm - the forest 8989be51f97SToby Isaac 8999be51f97SToby Isaac Output Parameter: 9009be51f97SToby Isaac . adaptStrategy - the adaptivity strategy (default DMFORESTADAPTALL) 9019be51f97SToby Isaac 9029be51f97SToby Isaac Level: advanced 9039be51f97SToby Isaac 9049be51f97SToby Isaac .seealso: DMForestSetAdaptivityStrategy() 9059be51f97SToby Isaac @*/ 906c7eeac06SToby Isaac PetscErrorCode DMForestGetAdaptivityStrategy(DM dm, DMForestAdaptivityStrategy *adaptStrategy) 907c7eeac06SToby Isaac { 908c7eeac06SToby Isaac DM_Forest *forest = (DM_Forest*) dm->data; 909c7eeac06SToby Isaac 910c7eeac06SToby Isaac PetscFunctionBegin; 911c7eeac06SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 912c7eeac06SToby Isaac PetscValidPointer(adaptStrategy,2); 913c7eeac06SToby Isaac *adaptStrategy = forest->adaptStrategy; 914c7eeac06SToby Isaac PetscFunctionReturn(0); 915c7eeac06SToby Isaac } 916c7eeac06SToby Isaac 9172a133e43SToby Isaac /*@ 9182a133e43SToby Isaac DMForestGetAdaptivitySuccess - Return whether the requested adaptation (refinement, coarsening, repartitioning, 9192a133e43SToby Isaac etc.) was successful. PETSC_FALSE indicates that the post-adaptation forest is the same as the pre-adpatation 9202a133e43SToby Isaac forest. A requested adaptation may have been unsuccessful if, for example, the requested refinement would have 9212a133e43SToby Isaac exceeded the maximum refinement level. 9222a133e43SToby Isaac 9232a133e43SToby Isaac Collective on dm 9242a133e43SToby Isaac 9252a133e43SToby Isaac Input Parameter: 9262a133e43SToby Isaac 9272a133e43SToby Isaac . dm - the post-adaptation forest 9282a133e43SToby Isaac 9292a133e43SToby Isaac Output Parameter: 9302a133e43SToby Isaac 9312a133e43SToby Isaac . success - PETSC_TRUE if the post-adaptation forest is different from the pre-adaptation forest. 9322a133e43SToby Isaac 9332a133e43SToby Isaac Level: intermediate 9342a133e43SToby Isaac 9352a133e43SToby Isaac .see 9362a133e43SToby Isaac @*/ 9372a133e43SToby Isaac PetscErrorCode DMForestGetAdaptivitySuccess(DM dm, PetscBool *success) 9382a133e43SToby Isaac { 9392a133e43SToby Isaac DM_Forest *forest; 9402a133e43SToby Isaac PetscErrorCode ierr; 9412a133e43SToby Isaac 9422a133e43SToby Isaac PetscFunctionBegin; 9432a133e43SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 9442a133e43SToby Isaac if (!dm->setupcalled) SETERRQ(PetscObjectComm((PetscObject)dm),PETSC_ERR_ARG_WRONGSTATE,"DMSetUp() has not been called yet."); 9452a133e43SToby Isaac forest = (DM_Forest *) dm->data; 9462a133e43SToby Isaac ierr = (forest->getadaptivitysuccess)(dm,success);CHKERRQ(ierr); 9472a133e43SToby Isaac PetscFunctionReturn(0); 9482a133e43SToby Isaac } 9492a133e43SToby Isaac 950bf9b5d84SToby Isaac /*@ 951bf9b5d84SToby Isaac DMForestSetComputeAdaptivitySF - During the pre-setup phase, set whether transfer PetscSFs should be computed 952bf9b5d84SToby Isaac relating the cells of the pre-adaptation forest to the post-adaptiation forest. After DMSetUp() is called, these transfer PetscSFs can be accessed with DMForestGetAdaptivitySF(). 953bf9b5d84SToby Isaac 954bf9b5d84SToby Isaac Logically collective on dm 955bf9b5d84SToby Isaac 956bf9b5d84SToby Isaac Input Parameters: 957bf9b5d84SToby Isaac + dm - the post-adaptation forest 958bf9b5d84SToby Isaac - computeSF - default PETSC_TRUE 959bf9b5d84SToby Isaac 960bf9b5d84SToby Isaac Level: advanced 961bf9b5d84SToby Isaac 962bf9b5d84SToby Isaac .seealso: DMForestGetComputeAdaptivitySF(), DMForestGetAdaptivitySF() 963bf9b5d84SToby Isaac @*/ 964bf9b5d84SToby Isaac PetscErrorCode DMForestSetComputeAdaptivitySF(DM dm, PetscBool computeSF) 965bf9b5d84SToby Isaac { 966bf9b5d84SToby Isaac DM_Forest *forest; 967bf9b5d84SToby Isaac 968bf9b5d84SToby Isaac PetscFunctionBegin; 969bf9b5d84SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 970bf9b5d84SToby Isaac if (dm->setupcalled) SETERRQ(PetscObjectComm((PetscObject)dm),PETSC_ERR_ARG_WRONGSTATE,"Cannot compute adaptivity PetscSFs after setup is called"); 971bf9b5d84SToby Isaac forest = (DM_Forest*) dm->data; 972bf9b5d84SToby Isaac forest->computeAdaptSF = computeSF; 973bf9b5d84SToby Isaac PetscFunctionReturn(0); 974bf9b5d84SToby Isaac } 975bf9b5d84SToby Isaac 9760eb7e1eaSToby Isaac PetscErrorCode DMForestTransferVec(DM dmIn, Vec vecIn, DM dmOut, Vec vecOut, PetscBool useBCs, PetscReal time) 97780b27e07SToby Isaac { 97880b27e07SToby Isaac DM_Forest *forest; 97980b27e07SToby Isaac PetscErrorCode ierr; 98080b27e07SToby Isaac 98180b27e07SToby Isaac PetscFunctionBegin; 98280b27e07SToby Isaac PetscValidHeaderSpecific(dmIn ,DM_CLASSID ,1); 98380b27e07SToby Isaac PetscValidHeaderSpecific(vecIn ,VEC_CLASSID ,2); 98480b27e07SToby Isaac PetscValidHeaderSpecific(dmOut ,DM_CLASSID ,3); 98580b27e07SToby Isaac PetscValidHeaderSpecific(vecOut ,VEC_CLASSID ,4); 98680b27e07SToby Isaac forest = (DM_Forest *) dmIn->data; 98780b27e07SToby Isaac if (!forest->transfervec) SETERRQ(PetscObjectComm((PetscObject)dmIn),PETSC_ERR_SUP,"DMForestTransferVec() not implemented"); 9880eb7e1eaSToby Isaac ierr = (forest->transfervec)(dmIn,vecIn,dmOut,vecOut,useBCs,time);CHKERRQ(ierr); 98980b27e07SToby Isaac PetscFunctionReturn(0); 99080b27e07SToby Isaac } 99180b27e07SToby Isaac 992bf9b5d84SToby Isaac /*@ 993bf9b5d84SToby Isaac DMForestGetComputeAdaptivitySF - Get whether transfer PetscSFs should be computed relating the cells of the 994bf9b5d84SToby Isaac pre-adaptation forest to the post-adaptiation forest. After DMSetUp() is called, these transfer PetscSFs can be 995bf9b5d84SToby Isaac accessed with DMForestGetAdaptivitySF(). 996bf9b5d84SToby Isaac 997bf9b5d84SToby Isaac Not collective 998bf9b5d84SToby Isaac 999bf9b5d84SToby Isaac Input Parameter: 1000bf9b5d84SToby Isaac . dm - the post-adaptation forest 1001bf9b5d84SToby Isaac 1002bf9b5d84SToby Isaac Output Parameter: 1003bf9b5d84SToby Isaac . computeSF - default PETSC_TRUE 1004bf9b5d84SToby Isaac 1005bf9b5d84SToby Isaac Level: advanced 1006bf9b5d84SToby Isaac 1007bf9b5d84SToby Isaac .seealso: DMForestSetComputeAdaptivitySF(), DMForestGetAdaptivitySF() 1008bf9b5d84SToby Isaac @*/ 1009bf9b5d84SToby Isaac PetscErrorCode DMForestGetComputeAdaptivitySF(DM dm, PetscBool *computeSF) 1010bf9b5d84SToby Isaac { 1011bf9b5d84SToby Isaac DM_Forest *forest; 1012bf9b5d84SToby Isaac 1013bf9b5d84SToby Isaac PetscFunctionBegin; 1014bf9b5d84SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 1015bf9b5d84SToby Isaac forest = (DM_Forest*) dm->data; 1016bf9b5d84SToby Isaac *computeSF = forest->computeAdaptSF; 1017bf9b5d84SToby Isaac PetscFunctionReturn(0); 1018bf9b5d84SToby Isaac } 1019bf9b5d84SToby Isaac 1020bf9b5d84SToby Isaac /*@ 1021bf9b5d84SToby Isaac DMForestGetAdaptivitySF - Get PetscSFs that relate the pre-adaptation forest to the post-adaptation forest. 1022bf9b5d84SToby Isaac Adaptation can be any combination of refinement, coarsening, repartition, and change of overlap, so there may be 1023bf9b5d84SToby Isaac some cells of the pre-adaptation that are parents of post-adaptation cells, and vice versa. Therefore there are two 1024bf9b5d84SToby Isaac PetscSFs: one that relates pre-adaptation coarse cells to post-adaptation fine cells, and one that relates 1025bf9b5d84SToby Isaac pre-adaptation fine cells to post-adaptation coarse cells. 1026bf9b5d84SToby Isaac 1027bf9b5d84SToby Isaac Not collective 1028bf9b5d84SToby Isaac 1029bf9b5d84SToby Isaac Input Parameter: 1030bf9b5d84SToby Isaac dm - the post-adaptation forest 1031bf9b5d84SToby Isaac 1032bf9b5d84SToby Isaac Output Parameter: 10330f17b9e3SToby Isaac preCoarseToFine - pre-adaptation coarse cells to post-adaptation fine cells: BCast goes from pre- to post- 10340f17b9e3SToby Isaac coarseToPreFine - post-adaptation coarse cells to pre-adaptation fine cells: BCast goes from post- to pre- 1035bf9b5d84SToby Isaac 1036bf9b5d84SToby Isaac Level: advanced 1037bf9b5d84SToby Isaac 1038bf9b5d84SToby Isaac .seealso: DMForestGetComputeAdaptivitySF(), DMForestSetComputeAdaptivitySF() 1039bf9b5d84SToby Isaac @*/ 10400f17b9e3SToby Isaac PetscErrorCode DMForestGetAdaptivitySF(DM dm, PetscSF *preCoarseToFine, PetscSF *coarseToPreFine) 1041bf9b5d84SToby Isaac { 1042bf9b5d84SToby Isaac DM_Forest *forest; 1043bf9b5d84SToby Isaac PetscErrorCode ierr; 1044bf9b5d84SToby Isaac 1045bf9b5d84SToby Isaac PetscFunctionBegin; 1046bf9b5d84SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 1047bf9b5d84SToby Isaac ierr = DMSetUp(dm);CHKERRQ(ierr); 1048bf9b5d84SToby Isaac forest = (DM_Forest*) dm->data; 1049f885a11aSToby Isaac if (preCoarseToFine) *preCoarseToFine = forest->preCoarseToFine; 1050f885a11aSToby Isaac if (coarseToPreFine) *coarseToPreFine = forest->coarseToPreFine; 1051bf9b5d84SToby Isaac PetscFunctionReturn(0); 1052bf9b5d84SToby Isaac } 1053bf9b5d84SToby Isaac 10549be51f97SToby Isaac /*@ 10559be51f97SToby Isaac DMForestSetGradeFactor - During the pre-setup phase, set the desired amount of grading in the mesh, e.g. give 2 to 10569be51f97SToby Isaac indicate that the diameter of neighboring cells should differ by at most a factor of 2. Subtypes of DMForest may 10579be51f97SToby Isaac only support one particular choice of grading factor. 10589be51f97SToby Isaac 10599be51f97SToby Isaac Logically collective on dm 10609be51f97SToby Isaac 10619be51f97SToby Isaac Input Parameters: 10629be51f97SToby Isaac + dm - the forest 10639be51f97SToby Isaac - grade - the grading factor 10649be51f97SToby Isaac 10659be51f97SToby Isaac Level: advanced 10669be51f97SToby Isaac 10679be51f97SToby Isaac .seealso: DMForestGetGradeFactor() 10689be51f97SToby Isaac @*/ 1069c7eeac06SToby Isaac PetscErrorCode DMForestSetGradeFactor(DM dm, PetscInt grade) 1070c7eeac06SToby Isaac { 1071c7eeac06SToby Isaac DM_Forest *forest = (DM_Forest*) dm->data; 1072c7eeac06SToby Isaac 1073c7eeac06SToby Isaac PetscFunctionBegin; 1074c7eeac06SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 1075ef51cf95SToby Isaac if (dm->setupcalled) SETERRQ(PetscObjectComm((PetscObject)dm),PETSC_ERR_ARG_WRONGSTATE,"Cannot change the grade factor after setup"); 1076c7eeac06SToby Isaac forest->gradeFactor = grade; 1077c7eeac06SToby Isaac PetscFunctionReturn(0); 1078c7eeac06SToby Isaac } 1079c7eeac06SToby Isaac 10809be51f97SToby Isaac /*@ 10819be51f97SToby Isaac DMForestGetGradeFactor - Get the desired amount of grading in the mesh, e.g. give 2 to indicate that the diameter of 10829be51f97SToby Isaac neighboring cells should differ by at most a factor of 2. Subtypes of DMForest may only support one particular 10839be51f97SToby Isaac choice of grading factor. 10849be51f97SToby Isaac 10859be51f97SToby Isaac Not collective 10869be51f97SToby Isaac 10879be51f97SToby Isaac Input Parameter: 10889be51f97SToby Isaac . dm - the forest 10899be51f97SToby Isaac 10909be51f97SToby Isaac Output Parameter: 10919be51f97SToby Isaac . grade - the grading factor 10929be51f97SToby Isaac 10939be51f97SToby Isaac Level: advanced 10949be51f97SToby Isaac 10959be51f97SToby Isaac .seealso: DMForestSetGradeFactor() 10969be51f97SToby Isaac @*/ 1097c7eeac06SToby Isaac PetscErrorCode DMForestGetGradeFactor(DM dm, PetscInt *grade) 1098c7eeac06SToby Isaac { 1099c7eeac06SToby Isaac DM_Forest *forest = (DM_Forest*) dm->data; 1100c7eeac06SToby Isaac 1101c7eeac06SToby Isaac PetscFunctionBegin; 1102c7eeac06SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 1103c7eeac06SToby Isaac PetscValidIntPointer(grade,2); 1104c7eeac06SToby Isaac *grade = forest->gradeFactor; 1105c7eeac06SToby Isaac PetscFunctionReturn(0); 1106c7eeac06SToby Isaac } 1107c7eeac06SToby Isaac 11089be51f97SToby Isaac /*@ 11099be51f97SToby Isaac DMForestSetCellWeightFactor - During the pre-setup phase, set the factor by which the level of refinement changes 11109be51f97SToby Isaac the cell weight (see DMForestSetCellWeights()) when calculating partitions. The final weight of a cell will be 11119be51f97SToby Isaac (cellWeight) * (weightFactor^refinementLevel). A factor of 1 indicates that the weight of a cell does not depend on 11129be51f97SToby Isaac its level; a factor of 2, for example, might be appropriate for sub-cycling time-stepping methods, when the 11139be51f97SToby Isaac computation associated with a cell is multiplied by a factor of 2 for each additional level of refinement. 11149be51f97SToby Isaac 11159be51f97SToby Isaac Logically collective on dm 11169be51f97SToby Isaac 11179be51f97SToby Isaac Input Parameters: 11189be51f97SToby Isaac + dm - the forest 11199be51f97SToby Isaac - weightsFactors - default 1. 11209be51f97SToby Isaac 11219be51f97SToby Isaac Level: advanced 11229be51f97SToby Isaac 11239be51f97SToby Isaac .seealso: DMForestGetCellWeightFactor(), DMForestSetCellWeights() 11249be51f97SToby Isaac @*/ 1125ef51cf95SToby Isaac PetscErrorCode DMForestSetCellWeightFactor(DM dm, PetscReal weightsFactor) 1126c7eeac06SToby Isaac { 1127c7eeac06SToby Isaac DM_Forest *forest = (DM_Forest*) dm->data; 1128c7eeac06SToby Isaac 1129c7eeac06SToby Isaac PetscFunctionBegin; 1130c7eeac06SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 1131ef51cf95SToby Isaac if (dm->setupcalled) SETERRQ(PetscObjectComm((PetscObject)dm),PETSC_ERR_ARG_WRONGSTATE,"Cannot change the weights factor after setup"); 1132c7eeac06SToby Isaac forest->weightsFactor = weightsFactor; 1133c7eeac06SToby Isaac PetscFunctionReturn(0); 1134c7eeac06SToby Isaac } 1135c7eeac06SToby Isaac 11369be51f97SToby Isaac /*@ 11379be51f97SToby Isaac DMForestGetCellWeightFactor - Get the factor by which the level of refinement changes the cell weight (see 11389be51f97SToby Isaac DMForestSetCellWeights()) when calculating partitions. The final weight of a cell will be (cellWeight) * 11399be51f97SToby Isaac (weightFactor^refinementLevel). A factor of 1 indicates that the weight of a cell does not depend on its level; a 11409be51f97SToby Isaac factor of 2, for example, might be appropriate for sub-cycling time-stepping methods, when the computation 11419be51f97SToby Isaac associated with a cell is multiplied by a factor of 2 for each additional level of refinement. 11429be51f97SToby Isaac 11439be51f97SToby Isaac Not collective 11449be51f97SToby Isaac 11459be51f97SToby Isaac Input Parameter: 11469be51f97SToby Isaac . dm - the forest 11479be51f97SToby Isaac 11489be51f97SToby Isaac Output Parameter: 11499be51f97SToby Isaac . weightsFactors - default 1. 11509be51f97SToby Isaac 11519be51f97SToby Isaac Level: advanced 11529be51f97SToby Isaac 11539be51f97SToby Isaac .seealso: DMForestSetCellWeightFactor(), DMForestSetCellWeights() 11549be51f97SToby Isaac @*/ 1155ef51cf95SToby Isaac PetscErrorCode DMForestGetCellWeightFactor(DM dm, PetscReal *weightsFactor) 1156c7eeac06SToby Isaac { 1157c7eeac06SToby Isaac DM_Forest *forest = (DM_Forest*) dm->data; 1158c7eeac06SToby Isaac 1159c7eeac06SToby Isaac PetscFunctionBegin; 1160c7eeac06SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 1161c7eeac06SToby Isaac PetscValidRealPointer(weightsFactor,2); 1162c7eeac06SToby Isaac *weightsFactor = forest->weightsFactor; 1163c7eeac06SToby Isaac PetscFunctionReturn(0); 1164c7eeac06SToby Isaac } 1165c7eeac06SToby Isaac 11669be51f97SToby Isaac /*@ 11679be51f97SToby Isaac DMForestGetCellChart - After the setup phase, get the local half-open interval of the chart of cells on this process 11689be51f97SToby Isaac 11699be51f97SToby Isaac Not collective 11709be51f97SToby Isaac 11719be51f97SToby Isaac Input Parameter: 11729be51f97SToby Isaac . dm - the forest 11739be51f97SToby Isaac 11749be51f97SToby Isaac Output Parameters: 11759be51f97SToby Isaac + cStart - the first cell on this process 11769be51f97SToby Isaac - cEnd - one after the final cell on this process 11779be51f97SToby Isaac 11781a244344SSatish Balay Level: intermediate 11799be51f97SToby Isaac 11809be51f97SToby Isaac .seealso: DMForestGetCellSF() 11819be51f97SToby Isaac @*/ 1182c7eeac06SToby Isaac PetscErrorCode DMForestGetCellChart(DM dm, PetscInt *cStart, PetscInt *cEnd) 1183c7eeac06SToby Isaac { 1184c7eeac06SToby Isaac DM_Forest *forest = (DM_Forest*) dm->data; 1185c7eeac06SToby Isaac PetscErrorCode ierr; 1186c7eeac06SToby Isaac 1187c7eeac06SToby Isaac PetscFunctionBegin; 1188c7eeac06SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 1189c7eeac06SToby Isaac PetscValidIntPointer(cStart,2); 1190c7eeac06SToby Isaac PetscValidIntPointer(cEnd,2); 1191c7eeac06SToby Isaac if (((forest->cStart == PETSC_DETERMINE) || (forest->cEnd == PETSC_DETERMINE)) && forest->createcellchart) { 1192c7eeac06SToby Isaac ierr = forest->createcellchart(dm,&forest->cStart,&forest->cEnd);CHKERRQ(ierr); 1193c7eeac06SToby Isaac } 1194c7eeac06SToby Isaac *cStart = forest->cStart; 1195c7eeac06SToby Isaac *cEnd = forest->cEnd; 1196c7eeac06SToby Isaac PetscFunctionReturn(0); 1197c7eeac06SToby Isaac } 1198c7eeac06SToby Isaac 11999be51f97SToby Isaac /*@ 12009be51f97SToby Isaac DMForestGetCellSF - After the setup phase, get the PetscSF for overlapping cells between processes 12019be51f97SToby Isaac 12029be51f97SToby Isaac Not collective 12039be51f97SToby Isaac 12049be51f97SToby Isaac Input Parameter: 12059be51f97SToby Isaac . dm - the forest 12069be51f97SToby Isaac 12079be51f97SToby Isaac Output Parameter: 12089be51f97SToby Isaac . cellSF - the PetscSF 12099be51f97SToby Isaac 12101a244344SSatish Balay Level: intermediate 12119be51f97SToby Isaac 12129be51f97SToby Isaac .seealso: DMForestGetCellChart() 12139be51f97SToby Isaac @*/ 1214c7eeac06SToby Isaac PetscErrorCode DMForestGetCellSF(DM dm, PetscSF *cellSF) 1215c7eeac06SToby Isaac { 1216c7eeac06SToby Isaac DM_Forest *forest = (DM_Forest*) dm->data; 1217c7eeac06SToby Isaac PetscErrorCode ierr; 1218c7eeac06SToby Isaac 1219c7eeac06SToby Isaac PetscFunctionBegin; 1220c7eeac06SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 1221c7eeac06SToby Isaac PetscValidPointer(cellSF,2); 1222c7eeac06SToby Isaac if ((!forest->cellSF) && forest->createcellsf) { 1223c7eeac06SToby Isaac ierr = forest->createcellsf(dm,&forest->cellSF);CHKERRQ(ierr); 1224c7eeac06SToby Isaac } 1225c7eeac06SToby Isaac *cellSF = forest->cellSF; 1226c7eeac06SToby Isaac PetscFunctionReturn(0); 1227c7eeac06SToby Isaac } 1228c7eeac06SToby Isaac 12299be51f97SToby Isaac /*@C 12309be51f97SToby Isaac DMForestSetAdaptivityLabel - During the pre-setup phase, set the label of the pre-adaptation forest (see 12319be51f97SToby Isaac DMForestGetAdaptivityForest()) that holds the adaptation flags (refinement, coarsening, or some combination). The 1232cd3c525cSToby Isaac interpretation of the label values is up to the subtype of DMForest, but DM_ADAPT_DETERMINE, DM_ADAPT_KEEP, 1233cd3c525cSToby Isaac DM_ADAPT_REFINE, and DM_ADAPT_COARSEN have been reserved as choices that should be accepted by all subtypes. 12349be51f97SToby Isaac 12359be51f97SToby Isaac Logically collective on dm 12369be51f97SToby Isaac 12379be51f97SToby Isaac Input Parameters: 12389be51f97SToby Isaac - dm - the forest 1239a1b0c543SToby Isaac + adaptLabel - the label in the pre-adaptation forest 12409be51f97SToby Isaac 12419be51f97SToby Isaac Level: intermediate 12429be51f97SToby Isaac 12439be51f97SToby Isaac .seealso DMForestGetAdaptivityLabel() 12449be51f97SToby Isaac @*/ 1245a1b0c543SToby Isaac PetscErrorCode DMForestSetAdaptivityLabel(DM dm, DMLabel adaptLabel) 1246c7eeac06SToby Isaac { 1247c7eeac06SToby Isaac DM_Forest *forest = (DM_Forest*) dm->data; 1248c7eeac06SToby Isaac PetscErrorCode ierr; 1249c7eeac06SToby Isaac 1250c7eeac06SToby Isaac PetscFunctionBegin; 1251c7eeac06SToby Isaac PetscValidHeaderSpecific(dm,DM_CLASSID,1); 1252a1b0c543SToby Isaac adaptLabel->refct++; 1253a1b0c543SToby Isaac if (forest->adaptLabel) {ierr = DMLabelDestroy(&forest->adaptLabel);CHKERRQ(ierr);} 1254a1b0c543SToby Isaac forest->adaptLabel = adaptLabel; 1255c7eeac06SToby Isaac PetscFunctionReturn(0); 1256c7eeac06SToby Isaac } 1257c7eeac06SToby Isaac 12589be51f97SToby Isaac /*@C 12599be51f97SToby Isaac DMForestGetAdaptivityLabel - Get the label of the pre-adaptation forest (see DMForestGetAdaptivityForest()) that 12609be51f97SToby Isaac holds the adaptation flags (refinement, coarsening, or some combination). The interpretation of the label values is 1261cd3c525cSToby Isaac up to the subtype of DMForest, but DM_ADAPT_DETERMINE, DM_ADAPT_KEEP, DM_ADAPT_REFINE, and DM_ADAPT_COARSEN have 1262cd3c525cSToby Isaac been reserved as choices that should be accepted by all subtypes. 12639be51f97SToby Isaac 12649be51f97SToby Isaac Not collective 12659be51f97SToby Isaac 12669be51f97SToby Isaac Input Parameter: 12679be51f97SToby Isaac . dm - the forest 12689be51f97SToby Isaac 12699be51f97SToby Isaac Output Parameter: 12709be51f97SToby Isaac . adaptLabel - the name of the label in the pre-adaptation forest 12719be51f97SToby Isaac 12729be51f97SToby Isaac Level: intermediate 12739be51f97SToby Isaac 12749be51f97SToby Isaac .seealso DMForestSetAdaptivityLabel() 12759be51f97SToby Isaac @*/ 1276a1b0c543SToby Isaac PetscErrorCode DMForestGetAdaptivityLabel(DM dm, DMLabel *adaptLabel) 1277c7eeac06SToby Isaac { 1278c7eeac06SToby Isaac DM_Forest *forest = (DM_Forest*) dm->data; 1279c7eeac06SToby Isaac 1280c7eeac06SToby Isaac PetscFunctionBegin; 1281c7eeac06SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 1282ba936b91SToby Isaac *adaptLabel = forest->adaptLabel; 1283c7eeac06SToby Isaac PetscFunctionReturn(0); 1284c7eeac06SToby Isaac } 1285c7eeac06SToby Isaac 12869be51f97SToby Isaac /*@ 12879be51f97SToby Isaac DMForestSetCellWeights - Set the weights assigned to each of the cells (see DMForestGetCellChart()) of the current 12889be51f97SToby Isaac process: weights are used to determine parallel partitioning. Partitions will be created so that each process's 12899be51f97SToby Isaac ratio of weight to capacity (see DMForestSetWeightCapacity()) is roughly equal. If NULL, each cell receives a weight 12909be51f97SToby Isaac of 1. 12919be51f97SToby Isaac 12929be51f97SToby Isaac Logically collective on dm 12939be51f97SToby Isaac 12949be51f97SToby Isaac Input Parameters: 12959be51f97SToby Isaac + dm - the forest 12969be51f97SToby Isaac . weights - the array of weights for all cells, or NULL to indicate each cell has weight 1. 12979be51f97SToby Isaac - copyMode - how weights should reference weights 12989be51f97SToby Isaac 12999be51f97SToby Isaac Level: advanced 13009be51f97SToby Isaac 13019be51f97SToby Isaac .seealso: DMForestGetCellWeights(), DMForestSetWeightCapacity() 13029be51f97SToby Isaac @*/ 1303c7eeac06SToby Isaac PetscErrorCode DMForestSetCellWeights(DM dm, PetscReal weights[], PetscCopyMode copyMode) 1304c7eeac06SToby Isaac { 1305c7eeac06SToby Isaac DM_Forest *forest = (DM_Forest*) dm->data; 1306c7eeac06SToby Isaac PetscInt cStart, cEnd; 1307c7eeac06SToby Isaac PetscErrorCode ierr; 1308c7eeac06SToby Isaac 1309c7eeac06SToby Isaac PetscFunctionBegin; 1310c7eeac06SToby Isaac PetscValidHeaderSpecific(dm,DM_CLASSID,1); 1311c7eeac06SToby Isaac ierr = DMForestGetCellChart(dm,&cStart,&cEnd);CHKERRQ(ierr); 1312c7eeac06SToby Isaac if (cEnd < cStart) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"cell chart [%d,%d) is not valid",cStart,cEnd); 1313c7eeac06SToby Isaac if (copyMode == PETSC_COPY_VALUES) { 1314c7eeac06SToby Isaac if (forest->cellWeightsCopyMode != PETSC_OWN_POINTER || forest->cellWeights == weights) { 1315c7eeac06SToby Isaac ierr = PetscMalloc1(cEnd-cStart,&forest->cellWeights);CHKERRQ(ierr); 1316c7eeac06SToby Isaac } 1317c7eeac06SToby Isaac ierr = PetscMemcpy(forest->cellWeights,weights,(cEnd-cStart)*sizeof(*weights));CHKERRQ(ierr); 1318c7eeac06SToby Isaac forest->cellWeightsCopyMode = PETSC_OWN_POINTER; 1319c7eeac06SToby Isaac PetscFunctionReturn(0); 1320c7eeac06SToby Isaac } 1321c7eeac06SToby Isaac if (forest->cellWeightsCopyMode == PETSC_OWN_POINTER) { 1322c7eeac06SToby Isaac ierr = PetscFree(forest->cellWeights);CHKERRQ(ierr); 1323c7eeac06SToby Isaac } 1324c7eeac06SToby Isaac forest->cellWeights = weights; 1325c7eeac06SToby Isaac forest->cellWeightsCopyMode = copyMode; 1326c7eeac06SToby Isaac PetscFunctionReturn(0); 1327c7eeac06SToby Isaac } 1328c7eeac06SToby Isaac 13299be51f97SToby Isaac /*@ 13309be51f97SToby Isaac DMForestGetCellWeights - Get the weights assigned to each of the cells (see DMForestGetCellChart()) of the current 13319be51f97SToby Isaac process: weights are used to determine parallel partitioning. Partitions will be created so that each process's 13329be51f97SToby Isaac ratio of weight to capacity (see DMForestSetWeightCapacity()) is roughly equal. If NULL, each cell receives a weight 13339be51f97SToby Isaac of 1. 13349be51f97SToby Isaac 13359be51f97SToby Isaac Not collective 13369be51f97SToby Isaac 13379be51f97SToby Isaac Input Parameter: 13389be51f97SToby Isaac . dm - the forest 13399be51f97SToby Isaac 13409be51f97SToby Isaac Output Parameter: 13419be51f97SToby Isaac . weights - the array of weights for all cells, or NULL to indicate each cell has weight 1. 13429be51f97SToby Isaac 13439be51f97SToby Isaac Level: advanced 13449be51f97SToby Isaac 13459be51f97SToby Isaac .seealso: DMForestSetCellWeights(), DMForestSetWeightCapacity() 13469be51f97SToby Isaac @*/ 1347c7eeac06SToby Isaac PetscErrorCode DMForestGetCellWeights(DM dm, PetscReal **weights) 1348c7eeac06SToby Isaac { 1349c7eeac06SToby Isaac DM_Forest *forest = (DM_Forest*) dm->data; 1350c7eeac06SToby Isaac 1351c7eeac06SToby Isaac PetscFunctionBegin; 1352c7eeac06SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 1353c7eeac06SToby Isaac PetscValidPointer(weights,2); 1354c7eeac06SToby Isaac *weights = forest->cellWeights; 1355c7eeac06SToby Isaac PetscFunctionReturn(0); 1356c7eeac06SToby Isaac } 1357c7eeac06SToby Isaac 13589be51f97SToby Isaac /*@ 13599be51f97SToby Isaac DMForestSetWeightCapacity - During the pre-setup phase, set the capacity of the current process when repartitioning 13609be51f97SToby Isaac a pre-adaptation forest (see DMForestGetAdaptivityForest()). After partitioning, the ratio of the weight of each 13619be51f97SToby Isaac process's cells to the process's capacity will be roughly equal for all processes. A capacity of 0 indicates that 13629be51f97SToby Isaac the current process should not have any cells after repartitioning. 13639be51f97SToby Isaac 13649be51f97SToby Isaac Logically Collective on dm 13659be51f97SToby Isaac 13669be51f97SToby Isaac Input parameters: 13679be51f97SToby Isaac + dm - the forest 13689be51f97SToby Isaac - capacity - this process's capacity 13699be51f97SToby Isaac 13709be51f97SToby Isaac Level: advanced 13719be51f97SToby Isaac 13729be51f97SToby Isaac .seealso DMForestGetWeightCapacity(), DMForestSetCellWeights(), DMForestSetCellWeightFactor() 13739be51f97SToby Isaac @*/ 1374c7eeac06SToby Isaac PetscErrorCode DMForestSetWeightCapacity(DM dm, PetscReal capacity) 1375c7eeac06SToby Isaac { 1376c7eeac06SToby Isaac DM_Forest *forest = (DM_Forest*) dm->data; 1377c7eeac06SToby Isaac 1378c7eeac06SToby Isaac PetscFunctionBegin; 1379c7eeac06SToby Isaac PetscValidHeaderSpecific(dm,DM_CLASSID,1); 1380ef51cf95SToby Isaac if (dm->setupcalled) SETERRQ(PetscObjectComm((PetscObject)dm),PETSC_ERR_ARG_WRONGSTATE,"Cannot change the weight capacity after setup"); 1381c7eeac06SToby Isaac if (capacity < 0.) SETERRQ1(PetscObjectComm((PetscObject)dm),PETSC_ERR_ARG_OUTOFRANGE,"Cannot have negative weight capacity; %f",capacity); 1382c7eeac06SToby Isaac forest->weightCapacity = capacity; 1383c7eeac06SToby Isaac PetscFunctionReturn(0); 1384c7eeac06SToby Isaac } 1385c7eeac06SToby Isaac 13869be51f97SToby Isaac /*@ 13879be51f97SToby Isaac DMForestGetWeightCapacity - Set the capacity of the current process when repartitioning a pre-adaptation forest (see 13889be51f97SToby Isaac DMForestGetAdaptivityForest()). After partitioning, the ratio of the weight of each process's cells to the 13899be51f97SToby Isaac process's capacity will be roughly equal for all processes. A capacity of 0 indicates that the current process 13909be51f97SToby Isaac should not have any cells after repartitioning. 13919be51f97SToby Isaac 13929be51f97SToby Isaac Not collective 13939be51f97SToby Isaac 13949be51f97SToby Isaac Input parameter: 13959be51f97SToby Isaac . dm - the forest 13969be51f97SToby Isaac 13979be51f97SToby Isaac Output parameter: 13989be51f97SToby Isaac . capacity - this process's capacity 13999be51f97SToby Isaac 14009be51f97SToby Isaac Level: advanced 14019be51f97SToby Isaac 14029be51f97SToby Isaac .seealso DMForestSetWeightCapacity(), DMForestSetCellWeights(), DMForestSetCellWeightFactor() 14039be51f97SToby Isaac @*/ 1404c7eeac06SToby Isaac PetscErrorCode DMForestGetWeightCapacity(DM dm, PetscReal *capacity) 1405c7eeac06SToby Isaac { 1406c7eeac06SToby Isaac DM_Forest *forest = (DM_Forest*) dm->data; 1407c7eeac06SToby Isaac 1408c7eeac06SToby Isaac PetscFunctionBegin; 1409c7eeac06SToby Isaac PetscValidHeaderSpecific(dm,DM_CLASSID,1); 1410c7eeac06SToby Isaac PetscValidRealPointer(capacity,2); 1411c7eeac06SToby Isaac *capacity = forest->weightCapacity; 1412c7eeac06SToby Isaac PetscFunctionReturn(0); 1413c7eeac06SToby Isaac } 1414c7eeac06SToby Isaac 14150709b2feSToby Isaac PETSC_EXTERN PetscErrorCode DMSetFromOptions_Forest(PetscOptionItems *PetscOptionsObject,DM dm) 1416db4d5e8cSToby Isaac { 1417db4d5e8cSToby Isaac DM_Forest *forest = (DM_Forest*) dm->data; 141856ba9f64SToby Isaac PetscBool flg, flg1, flg2, flg3, flg4; 1419dd8e54a2SToby Isaac DMForestTopology oldTopo; 1420c7eeac06SToby Isaac char stringBuffer[256]; 1421dd8e54a2SToby Isaac PetscViewer viewer; 1422dd8e54a2SToby Isaac PetscViewerFormat format; 142356ba9f64SToby Isaac PetscInt adjDim, adjCodim, overlap, minRefinement, initRefinement, maxRefinement, grade; 1424c7eeac06SToby Isaac PetscReal weightsFactor; 1425c7eeac06SToby Isaac DMForestAdaptivityStrategy adaptStrategy; 1426db4d5e8cSToby Isaac PetscErrorCode ierr; 1427db4d5e8cSToby Isaac 1428db4d5e8cSToby Isaac PetscFunctionBegin; 1429db4d5e8cSToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 143058762b62SToby Isaac forest->setfromoptionscalled = PETSC_TRUE; 1431dd8e54a2SToby Isaac ierr = DMForestGetTopology(dm, &oldTopo);CHKERRQ(ierr); 1432a3eda1eaSToby Isaac ierr = PetscOptionsHead(PetscOptionsObject,"DMForest Options");CHKERRQ(ierr); 143356ba9f64SToby Isaac ierr = PetscOptionsString("-dm_forest_topology","the topology of the forest's base mesh","DMForestSetTopology",oldTopo,stringBuffer,256,&flg1);CHKERRQ(ierr); 143456ba9f64SToby Isaac ierr = PetscOptionsViewer("-dm_forest_base_dm","load the base DM from a viewer specification","DMForestSetBaseDM",&viewer,&format,&flg2);CHKERRQ(ierr); 143556ba9f64SToby Isaac ierr = PetscOptionsViewer("-dm_forest_coarse_forest","load the coarse forest from a viewer specification","DMForestSetCoarseForest",&viewer,&format,&flg3);CHKERRQ(ierr); 143656ba9f64SToby Isaac ierr = PetscOptionsViewer("-dm_forest_fine_forest","load the fine forest from a viewer specification","DMForestSetFineForest",&viewer,&format,&flg4);CHKERRQ(ierr); 1437f885a11aSToby Isaac if ((PetscInt) flg1 + (PetscInt) flg2 + (PetscInt) flg3 + (PetscInt) flg4 > 1) SETERRQ(PetscObjectComm((PetscObject)dm),PETSC_ERR_ARG_INCOMP,"Specify only one of -dm_forest_{topology,base_dm,coarse_forest,fine_forest}"); 143856ba9f64SToby Isaac if (flg1) { 143956ba9f64SToby Isaac ierr = DMForestSetTopology(dm,(DMForestTopology)stringBuffer);CHKERRQ(ierr); 144056ba9f64SToby Isaac ierr = DMForestSetBaseDM(dm,NULL);CHKERRQ(ierr); 144120e8089bSToby Isaac ierr = DMForestSetAdaptivityForest(dm,NULL);CHKERRQ(ierr); 144256ba9f64SToby Isaac } 144356ba9f64SToby Isaac if (flg2) { 1444dd8e54a2SToby Isaac DM base; 1445dd8e54a2SToby Isaac 1446dd8e54a2SToby Isaac ierr = DMCreate(PetscObjectComm((PetscObject)dm),&base);CHKERRQ(ierr); 1447dd8e54a2SToby Isaac ierr = PetscViewerPushFormat(viewer,format);CHKERRQ(ierr); 1448dd8e54a2SToby Isaac ierr = DMLoad(base,viewer);CHKERRQ(ierr); 1449dd8e54a2SToby Isaac ierr = PetscViewerDestroy(&viewer);CHKERRQ(ierr); 1450dd8e54a2SToby Isaac ierr = DMForestSetBaseDM(dm,base);CHKERRQ(ierr); 1451dd8e54a2SToby Isaac ierr = DMDestroy(&base);CHKERRQ(ierr); 145256ba9f64SToby Isaac ierr = DMForestSetTopology(dm,NULL);CHKERRQ(ierr); 145320e8089bSToby Isaac ierr = DMForestSetAdaptivityForest(dm,NULL);CHKERRQ(ierr); 1454dd8e54a2SToby Isaac } 145556ba9f64SToby Isaac if (flg3) { 1456dd8e54a2SToby Isaac DM coarse; 1457dd8e54a2SToby Isaac 1458dd8e54a2SToby Isaac ierr = DMCreate(PetscObjectComm((PetscObject)dm),&coarse);CHKERRQ(ierr); 1459dd8e54a2SToby Isaac ierr = PetscViewerPushFormat(viewer,format);CHKERRQ(ierr); 1460dd8e54a2SToby Isaac ierr = DMLoad(coarse,viewer);CHKERRQ(ierr); 1461dd8e54a2SToby Isaac ierr = PetscViewerDestroy(&viewer);CHKERRQ(ierr); 146220e8089bSToby Isaac ierr = DMForestSetAdaptivityForest(dm,coarse);CHKERRQ(ierr); 1463dd8e54a2SToby Isaac ierr = DMDestroy(&coarse);CHKERRQ(ierr); 146456ba9f64SToby Isaac ierr = DMForestSetTopology(dm,NULL);CHKERRQ(ierr); 146556ba9f64SToby Isaac ierr = DMForestSetBaseDM(dm,NULL);CHKERRQ(ierr); 1466dd8e54a2SToby Isaac } 146756ba9f64SToby Isaac if (flg4) { 1468dd8e54a2SToby Isaac DM fine; 1469dd8e54a2SToby Isaac 1470dd8e54a2SToby Isaac ierr = DMCreate(PetscObjectComm((PetscObject)dm),&fine);CHKERRQ(ierr); 1471dd8e54a2SToby Isaac ierr = PetscViewerPushFormat(viewer,format);CHKERRQ(ierr); 1472dd8e54a2SToby Isaac ierr = DMLoad(fine,viewer);CHKERRQ(ierr); 1473dd8e54a2SToby Isaac ierr = PetscViewerDestroy(&viewer);CHKERRQ(ierr); 147420e8089bSToby Isaac ierr = DMForestSetAdaptivityForest(dm,fine);CHKERRQ(ierr); 1475dd8e54a2SToby Isaac ierr = DMDestroy(&fine);CHKERRQ(ierr); 147656ba9f64SToby Isaac ierr = DMForestSetTopology(dm,NULL);CHKERRQ(ierr); 147756ba9f64SToby Isaac ierr = DMForestSetBaseDM(dm,NULL);CHKERRQ(ierr); 1478dd8e54a2SToby Isaac } 1479dd8e54a2SToby Isaac ierr = DMForestGetAdjacencyDimension(dm,&adjDim);CHKERRQ(ierr); 1480dd8e54a2SToby Isaac ierr = PetscOptionsInt("-dm_forest_adjacency_dimension","set the dimension of points that define adjacency in the forest","DMForestSetAdjacencyDimension",adjDim,&adjDim,&flg);CHKERRQ(ierr); 1481dd8e54a2SToby Isaac if (flg) { 1482dd8e54a2SToby Isaac ierr = DMForestSetAdjacencyDimension(dm,adjDim);CHKERRQ(ierr); 1483f885a11aSToby Isaac } else { 1484dd8e54a2SToby Isaac ierr = DMForestGetAdjacencyCodimension(dm,&adjCodim);CHKERRQ(ierr); 1485dd8e54a2SToby Isaac ierr = PetscOptionsInt("-dm_forest_adjacency_codimension","set the codimension of points that define adjacency in the forest","DMForestSetAdjacencyCodimension",adjCodim,&adjCodim,&flg);CHKERRQ(ierr); 1486dd8e54a2SToby Isaac if (flg) { 1487dd8e54a2SToby Isaac ierr = DMForestSetAdjacencyCodimension(dm,adjCodim);CHKERRQ(ierr); 1488dd8e54a2SToby Isaac } 1489dd8e54a2SToby Isaac } 1490dd8e54a2SToby Isaac ierr = DMForestGetPartitionOverlap(dm,&overlap);CHKERRQ(ierr); 1491dd8e54a2SToby Isaac ierr = PetscOptionsInt("-dm_forest_partition_overlap","set the degree of partition overlap","DMForestSetPartitionOverlap",overlap,&overlap,&flg);CHKERRQ(ierr); 1492dd8e54a2SToby Isaac if (flg) { 1493dd8e54a2SToby Isaac ierr = DMForestSetPartitionOverlap(dm,overlap);CHKERRQ(ierr); 1494dd8e54a2SToby Isaac } 1495a6121fbdSMatthew G. Knepley #if 0 1496a6121fbdSMatthew G. Knepley ierr = PetscOptionsInt("-dm_refine","equivalent to -dm_forest_set_minimum_refinement and -dm_forest_set_initial_refinement with the same value",NULL,minRefinement,&minRefinement,&flg);CHKERRQ(ierr); 1497a6121fbdSMatthew G. Knepley if (flg) { 1498a6121fbdSMatthew G. Knepley ierr = DMForestSetMinimumRefinement(dm,minRefinement);CHKERRQ(ierr); 1499a6121fbdSMatthew G. Knepley ierr = DMForestSetInitialRefinement(dm,minRefinement);CHKERRQ(ierr); 1500a6121fbdSMatthew G. Knepley } 1501a6121fbdSMatthew G. Knepley ierr = PetscOptionsInt("-dm_refine_hierarchy","equivalent to -dm_forest_set_minimum_refinement 0 and -dm_forest_set_initial_refinement",NULL,initRefinement,&initRefinement,&flg);CHKERRQ(ierr); 1502a6121fbdSMatthew G. Knepley if (flg) { 1503a6121fbdSMatthew G. Knepley ierr = DMForestSetMinimumRefinement(dm,0);CHKERRQ(ierr); 1504a6121fbdSMatthew G. Knepley ierr = DMForestSetInitialRefinement(dm,initRefinement);CHKERRQ(ierr); 1505a6121fbdSMatthew G. Knepley } 1506a6121fbdSMatthew G. Knepley #endif 1507dd8e54a2SToby Isaac ierr = DMForestGetMinimumRefinement(dm,&minRefinement);CHKERRQ(ierr); 1508dd8e54a2SToby Isaac ierr = PetscOptionsInt("-dm_forest_minimum_refinement","set the minimum level of refinement in the forest","DMForestSetMinimumRefinement",minRefinement,&minRefinement,&flg);CHKERRQ(ierr); 1509dd8e54a2SToby Isaac if (flg) { 1510dd8e54a2SToby Isaac ierr = DMForestSetMinimumRefinement(dm,minRefinement);CHKERRQ(ierr); 1511db4d5e8cSToby Isaac } 151256ba9f64SToby Isaac ierr = DMForestGetInitialRefinement(dm,&initRefinement);CHKERRQ(ierr); 151356ba9f64SToby Isaac ierr = PetscOptionsInt("-dm_forest_initial_refinement","set the initial level of refinement in the forest","DMForestSetInitialRefinement",initRefinement,&initRefinement,&flg);CHKERRQ(ierr); 151456ba9f64SToby Isaac if (flg) { 151556ba9f64SToby Isaac ierr = DMForestSetInitialRefinement(dm,initRefinement);CHKERRQ(ierr); 151656ba9f64SToby Isaac } 1517c7eeac06SToby Isaac ierr = DMForestGetMaximumRefinement(dm,&maxRefinement);CHKERRQ(ierr); 1518c7eeac06SToby Isaac ierr = PetscOptionsInt("-dm_forest_maximum_refinement","set the maximum level of refinement in the forest","DMForestSetMaximumRefinement",maxRefinement,&maxRefinement,&flg);CHKERRQ(ierr); 1519c7eeac06SToby Isaac if (flg) { 1520c7eeac06SToby Isaac ierr = DMForestSetMaximumRefinement(dm,maxRefinement);CHKERRQ(ierr); 1521c7eeac06SToby Isaac } 1522c7eeac06SToby Isaac ierr = DMForestGetAdaptivityStrategy(dm,&adaptStrategy);CHKERRQ(ierr); 1523c7eeac06SToby Isaac ierr = PetscOptionsString("-dm_forest_adaptivity_strategy","the forest's adaptivity-flag resolution strategy","DMForestSetAdaptivityStrategy",adaptStrategy,stringBuffer,256,&flg);CHKERRQ(ierr); 1524c7eeac06SToby Isaac if (flg) { 1525c7eeac06SToby Isaac ierr = DMForestSetAdaptivityStrategy(dm,(DMForestAdaptivityStrategy)stringBuffer);CHKERRQ(ierr); 1526c7eeac06SToby Isaac } 1527c7eeac06SToby Isaac ierr = DMForestGetGradeFactor(dm,&grade);CHKERRQ(ierr); 1528c7eeac06SToby Isaac ierr = PetscOptionsInt("-dm_forest_grade_factor","grade factor between neighboring cells","DMForestSetGradeFactor",grade,&grade,&flg);CHKERRQ(ierr); 1529c7eeac06SToby Isaac if (flg) { 1530c7eeac06SToby Isaac ierr = DMForestSetGradeFactor(dm,grade);CHKERRQ(ierr); 1531c7eeac06SToby Isaac } 1532c7eeac06SToby Isaac ierr = DMForestGetCellWeightFactor(dm,&weightsFactor);CHKERRQ(ierr); 1533c7eeac06SToby Isaac ierr = PetscOptionsReal("-dm_forest_cell_weight_factor","multiplying weight factor for cell refinement","DMForestSetCellWeightFactor",weightsFactor,&weightsFactor,&flg);CHKERRQ(ierr); 1534c7eeac06SToby Isaac if (flg) { 1535c7eeac06SToby Isaac ierr = DMForestSetCellWeightFactor(dm,weightsFactor);CHKERRQ(ierr); 1536c7eeac06SToby Isaac } 1537db4d5e8cSToby Isaac ierr = PetscOptionsTail();CHKERRQ(ierr); 1538db4d5e8cSToby Isaac PetscFunctionReturn(0); 1539db4d5e8cSToby Isaac } 1540db4d5e8cSToby Isaac 1541d8984e3bSMatthew G. Knepley PetscErrorCode DMCreateSubDM_Forest(DM dm, PetscInt numFields, PetscInt fields[], IS *is, DM *subdm) 1542d8984e3bSMatthew G. Knepley { 1543d8984e3bSMatthew G. Knepley PetscErrorCode ierr; 1544d8984e3bSMatthew G. Knepley 1545d8984e3bSMatthew G. Knepley PetscFunctionBegin; 1546d8984e3bSMatthew G. Knepley if (subdm) {ierr = DMClone(dm, subdm);CHKERRQ(ierr);} 1547d8984e3bSMatthew G. Knepley ierr = DMCreateSubDM_Section_Private(dm, numFields, fields, is, subdm);CHKERRQ(ierr); 1548d8984e3bSMatthew G. Knepley PetscFunctionReturn(0); 1549d8984e3bSMatthew G. Knepley } 1550d8984e3bSMatthew G. Knepley 15515421bac9SToby Isaac PetscErrorCode DMRefine_Forest(DM dm, MPI_Comm comm, DM *dmRefined) 15525421bac9SToby Isaac { 15535421bac9SToby Isaac DMLabel refine; 15545421bac9SToby Isaac DM fineDM; 15555421bac9SToby Isaac PetscErrorCode ierr; 15565421bac9SToby Isaac 15575421bac9SToby Isaac PetscFunctionBegin; 15585421bac9SToby Isaac ierr = DMGetFineDM(dm,&fineDM);CHKERRQ(ierr); 15595421bac9SToby Isaac if (fineDM) { 15605421bac9SToby Isaac ierr = PetscObjectReference((PetscObject)fineDM);CHKERRQ(ierr); 15615421bac9SToby Isaac *dmRefined = fineDM; 15625421bac9SToby Isaac PetscFunctionReturn(0); 15635421bac9SToby Isaac } 15645421bac9SToby Isaac ierr = DMForestTemplate(dm,comm,dmRefined);CHKERRQ(ierr); 15655421bac9SToby Isaac ierr = DMGetLabel(dm,"refine",&refine);CHKERRQ(ierr); 15665421bac9SToby Isaac if (!refine) { 1567a1b0c543SToby Isaac ierr = DMLabelCreate("refine",&refine);CHKERRQ(ierr); 1568a1b0c543SToby Isaac ierr = DMLabelSetDefaultValue(refine,DM_ADAPT_REFINE);CHKERRQ(ierr); 15695421bac9SToby Isaac } 1570a1b0c543SToby Isaac else { 1571a1b0c543SToby Isaac refine->refct++; 1572a1b0c543SToby Isaac } 1573a1b0c543SToby Isaac ierr = DMForestSetAdaptivityLabel(*dmRefined,refine);CHKERRQ(ierr); 1574a1b0c543SToby Isaac ierr = DMLabelDestroy(&refine);CHKERRQ(ierr); 15755421bac9SToby Isaac PetscFunctionReturn(0); 15765421bac9SToby Isaac } 15775421bac9SToby Isaac 15785421bac9SToby Isaac PetscErrorCode DMCoarsen_Forest(DM dm, MPI_Comm comm, DM *dmCoarsened) 15795421bac9SToby Isaac { 15805421bac9SToby Isaac DMLabel coarsen; 15815421bac9SToby Isaac DM coarseDM; 15825421bac9SToby Isaac PetscErrorCode ierr; 15835421bac9SToby Isaac 15845421bac9SToby Isaac PetscFunctionBegin; 15854098eed7SToby Isaac { 15864098eed7SToby Isaac PetscMPIInt mpiComparison; 15874098eed7SToby Isaac MPI_Comm dmcomm = PetscObjectComm((PetscObject)dm); 15884098eed7SToby Isaac 15894098eed7SToby Isaac ierr = MPI_Comm_compare(comm, dmcomm, &mpiComparison);CHKERRQ(ierr); 1590f885a11aSToby Isaac if (mpiComparison != MPI_IDENT && mpiComparison != MPI_CONGRUENT) SETERRQ(dmcomm,PETSC_ERR_SUP,"No support for different communicators yet"); 15914098eed7SToby Isaac } 15925421bac9SToby Isaac ierr = DMGetCoarseDM(dm,&coarseDM);CHKERRQ(ierr); 15935421bac9SToby Isaac if (coarseDM) { 15945421bac9SToby Isaac ierr = PetscObjectReference((PetscObject)coarseDM);CHKERRQ(ierr); 15955421bac9SToby Isaac *dmCoarsened = coarseDM; 15965421bac9SToby Isaac PetscFunctionReturn(0); 15975421bac9SToby Isaac } 15985421bac9SToby Isaac ierr = DMForestTemplate(dm,comm,dmCoarsened);CHKERRQ(ierr); 1599a1b0c543SToby Isaac ierr = DMForestSetAdaptivityPurpose(coarseDM,DM_ADAPT_COARSEN);CHKERRQ(ierr); 16005421bac9SToby Isaac ierr = DMGetLabel(dm,"coarsen",&coarsen);CHKERRQ(ierr); 16015421bac9SToby Isaac if (!coarsen) { 1602a1b0c543SToby Isaac ierr = DMLabelCreate("coarsen",&coarsen);CHKERRQ(ierr); 1603a1b0c543SToby Isaac ierr = DMLabelSetDefaultValue(coarsen,DM_ADAPT_COARSEN);CHKERRQ(ierr); 1604a1b0c543SToby Isaac } else { 1605a1b0c543SToby Isaac coarsen->refct++; 16065421bac9SToby Isaac } 1607a1b0c543SToby Isaac ierr = DMForestSetAdaptivityLabel(*dmCoarsened,coarsen);CHKERRQ(ierr); 1608a1b0c543SToby Isaac ierr = DMLabelDestroy(&coarsen);CHKERRQ(ierr); 16095421bac9SToby Isaac PetscFunctionReturn(0); 16105421bac9SToby Isaac } 16115421bac9SToby Isaac 1612a1b0c543SToby Isaac static PetscErrorCode DMAdaptLabel_Forest(DM dm, DMLabel label, DM *adaptedDM) 161309350103SToby Isaac { 161409350103SToby Isaac PetscBool success; 161509350103SToby Isaac PetscErrorCode ierr; 161609350103SToby Isaac 161709350103SToby Isaac PetscFunctionBegin; 161809350103SToby Isaac ierr = DMForestTemplate(dm,PetscObjectComm((PetscObject)dm),adaptedDM);CHKERRQ(ierr); 1619a1b0c543SToby Isaac ierr = DMForestSetAdaptivityLabel(*adaptedDM,label);CHKERRQ(ierr); 162009350103SToby Isaac ierr = DMSetUp(*adaptedDM);CHKERRQ(ierr); 162109350103SToby Isaac ierr = DMForestGetAdaptivitySuccess(*adaptedDM,&success);CHKERRQ(ierr); 162209350103SToby Isaac if (!success) { 162309350103SToby Isaac ierr = DMDestroy(adaptedDM);CHKERRQ(ierr); 162409350103SToby Isaac *adaptedDM = NULL; 162509350103SToby Isaac } 162609350103SToby Isaac PetscFunctionReturn(0); 162709350103SToby Isaac } 162809350103SToby Isaac 1629d222f98bSToby Isaac static PetscErrorCode DMInitialize_Forest(DM dm) 1630d222f98bSToby Isaac { 1631d222f98bSToby Isaac PetscErrorCode ierr; 1632d222f98bSToby Isaac 1633d222f98bSToby Isaac PetscFunctionBegin; 1634d222f98bSToby Isaac ierr = PetscMemzero(dm->ops,sizeof(*(dm->ops)));CHKERRQ(ierr); 1635d222f98bSToby Isaac 1636d222f98bSToby Isaac dm->ops->clone = DMClone_Forest; 1637d222f98bSToby Isaac dm->ops->setfromoptions = DMSetFromOptions_Forest; 1638d222f98bSToby Isaac dm->ops->destroy = DMDestroy_Forest; 1639d8984e3bSMatthew G. Knepley dm->ops->createsubdm = DMCreateSubDM_Forest; 16405421bac9SToby Isaac dm->ops->refine = DMRefine_Forest; 16415421bac9SToby Isaac dm->ops->coarsen = DMCoarsen_Forest; 16420d1cd5e0SMatthew G. Knepley dm->ops->adaptlabel = DMAdaptLabel_Forest; 1643d222f98bSToby Isaac PetscFunctionReturn(0); 1644d222f98bSToby Isaac } 1645d222f98bSToby Isaac 16469be51f97SToby Isaac /*MC 16479be51f97SToby Isaac 1648bae1f979SBarry Smith DMFOREST = "forest" - A DM object that encapsulates a hierarchically refined mesh. Forests usually have a base DM 1649bae1f979SBarry Smith (see DMForestGetBaseDM()), from which it is refined. The refinement and partitioning of forests is considered 1650bae1f979SBarry Smith immutable after DMSetUp() is called. To adapt a mesh, one should call DMForestTemplate() to create a new mesh that 1651bae1f979SBarry Smith will default to being identical to it, specify how that mesh should differ, and then calling DMSetUp() on the new 1652bae1f979SBarry Smith mesh. 1653bae1f979SBarry Smith 1654bae1f979SBarry Smith To specify that a mesh should be refined or coarsened from the previous mesh, a label should be defined on the 1655bae1f979SBarry Smith previous mesh whose values indicate which cells should be refined (DM_ADAPT_REFINE) or coarsened (DM_ADAPT_COARSEN) 1656bae1f979SBarry Smith and how (subtypes are free to allow additional values for things like anisotropic refinement). The label should be 1657bae1f979SBarry Smith given to the *new* mesh with DMForestSetAdaptivityLabel(). 16589be51f97SToby Isaac 16599be51f97SToby Isaac Level: advanced 16609be51f97SToby Isaac 16619be51f97SToby Isaac .seealso: DMType, DMCreate(), DMSetType(), DMForestGetBaseDM(), DMForestSetBaseDM(), DMForestTemplate(), DMForestSetAdaptivityLabel() 16629be51f97SToby Isaac M*/ 16639be51f97SToby Isaac 1664db4d5e8cSToby Isaac PETSC_EXTERN PetscErrorCode DMCreate_Forest(DM dm) 1665db4d5e8cSToby Isaac { 1666db4d5e8cSToby Isaac DM_Forest *forest; 1667db4d5e8cSToby Isaac PetscErrorCode ierr; 1668db4d5e8cSToby Isaac 1669db4d5e8cSToby Isaac PetscFunctionBegin; 1670db4d5e8cSToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 1671db4d5e8cSToby Isaac ierr = PetscNewLog(dm,&forest);CHKERRQ(ierr); 1672db4d5e8cSToby Isaac dm->dim = 0; 1673db4d5e8cSToby Isaac dm->data = forest; 1674db4d5e8cSToby Isaac forest->refct = 1; 1675db4d5e8cSToby Isaac forest->data = NULL; 167658762b62SToby Isaac forest->setfromoptionscalled = PETSC_FALSE; 1677db4d5e8cSToby Isaac forest->topology = NULL; 1678cd3c525cSToby Isaac forest->adapt = NULL; 1679db4d5e8cSToby Isaac forest->base = NULL; 16806a87ffbfSToby Isaac forest->adaptPurpose = DM_ADAPT_DETERMINE; 1681db4d5e8cSToby Isaac forest->adjDim = PETSC_DEFAULT; 1682db4d5e8cSToby Isaac forest->overlap = PETSC_DEFAULT; 1683db4d5e8cSToby Isaac forest->minRefinement = PETSC_DEFAULT; 1684db4d5e8cSToby Isaac forest->maxRefinement = PETSC_DEFAULT; 168556ba9f64SToby Isaac forest->initRefinement = PETSC_DEFAULT; 1686c7eeac06SToby Isaac forest->cStart = PETSC_DETERMINE; 1687c7eeac06SToby Isaac forest->cEnd = PETSC_DETERMINE; 1688cd3c525cSToby Isaac forest->cellSF = NULL; 1689ebdf65a2SToby Isaac forest->adaptLabel = NULL; 1690db4d5e8cSToby Isaac forest->gradeFactor = 2; 1691db4d5e8cSToby Isaac forest->cellWeights = NULL; 1692db4d5e8cSToby Isaac forest->cellWeightsCopyMode = PETSC_USE_POINTER; 1693db4d5e8cSToby Isaac forest->weightsFactor = 1.; 1694db4d5e8cSToby Isaac forest->weightCapacity = 1.; 1695a73e2921SToby Isaac ierr = DMForestSetAdaptivityStrategy(dm,DMFORESTADAPTALL);CHKERRQ(ierr); 1696d222f98bSToby Isaac ierr = DMInitialize_Forest(dm);CHKERRQ(ierr); 1697db4d5e8cSToby Isaac PetscFunctionReturn(0); 1698db4d5e8cSToby Isaac } 1699db4d5e8cSToby Isaac 1700