xref: /petsc/src/dm/impls/forest/p4est/pforest.h (revision 9d47de495d3c23378050c1b4a410c12a375cb6c6)
1a4963045SJacob Faibussowitsch #pragma once
23ea99036SJacob Faibussowitsch 
30a96aa3bSJed Brown #include <petscds.h>
4707c51c7SToby Isaac #include <petscfe.h>
50a96aa3bSJed Brown #include <petsc/private/dmimpl.h>
60a96aa3bSJed Brown #include <petsc/private/dmforestimpl.h>
70a96aa3bSJed Brown #include <petsc/private/dmpleximpl.h>
80a96aa3bSJed Brown #include <petsc/private/dmlabelimpl.h>
90a96aa3bSJed Brown #include <petsc/private/viewerimpl.h>
100a96aa3bSJed Brown #include <../src/sys/classes/viewer/impls/vtk/vtkvimpl.h>
110a96aa3bSJed Brown #include "petsc_p4est_package.h"
120a96aa3bSJed Brown 
130a96aa3bSJed Brown #if defined(PETSC_HAVE_P4EST)
140a96aa3bSJed Brown 
150a96aa3bSJed Brown   #if !defined(P4_TO_P8)
160a96aa3bSJed Brown     #include <p4est.h>
170a96aa3bSJed Brown     #include <p4est_extended.h>
180a96aa3bSJed Brown     #include <p4est_geometry.h>
190a96aa3bSJed Brown     #include <p4est_ghost.h>
200a96aa3bSJed Brown     #include <p4est_lnodes.h>
210a96aa3bSJed Brown     #include <p4est_vtk.h>
220a96aa3bSJed Brown     #include <p4est_plex.h>
230a96aa3bSJed Brown     #include <p4est_bits.h>
240a96aa3bSJed Brown     #include <p4est_algorithms.h>
250a96aa3bSJed Brown   #else
260a96aa3bSJed Brown     #include <p8est.h>
270a96aa3bSJed Brown     #include <p8est_extended.h>
280a96aa3bSJed Brown     #include <p8est_geometry.h>
290a96aa3bSJed Brown     #include <p8est_ghost.h>
300a96aa3bSJed Brown     #include <p8est_lnodes.h>
310a96aa3bSJed Brown     #include <p8est_vtk.h>
320a96aa3bSJed Brown     #include <p8est_plex.h>
330a96aa3bSJed Brown     #include <p8est_bits.h>
340a96aa3bSJed Brown     #include <p8est_algorithms.h>
350a96aa3bSJed Brown   #endif
360a96aa3bSJed Brown 
379371c9d4SSatish Balay typedef enum {
389371c9d4SSatish Balay   PATTERN_HASH,
399371c9d4SSatish Balay   PATTERN_FRACTAL,
409371c9d4SSatish Balay   PATTERN_CORNER,
419371c9d4SSatish Balay   PATTERN_CENTER,
429371c9d4SSatish Balay   PATTERN_COUNT
439371c9d4SSatish Balay } DMRefinePattern;
440a96aa3bSJed Brown static const char *DMRefinePatternName[PATTERN_COUNT] = {"hash", "fractal", "corner", "center"};
450a96aa3bSJed Brown 
469371c9d4SSatish Balay typedef struct _DMRefinePatternCtx {
470a96aa3bSJed Brown   PetscInt       corner;
480a96aa3bSJed Brown   PetscBool      fractal[P4EST_CHILDREN];
490a96aa3bSJed Brown   PetscReal      hashLikelihood;
500a96aa3bSJed Brown   PetscInt       maxLevel;
510a96aa3bSJed Brown   p4est_refine_t refine_fn;
529371c9d4SSatish Balay } DMRefinePatternCtx;
530a96aa3bSJed Brown 
DMRefinePattern_Corner(p4est_t * p4est,p4est_topidx_t which_tree,p4est_quadrant_t * quadrant)54d71ae5a4SJacob Faibussowitsch static int DMRefinePattern_Corner(p4est_t *p4est, p4est_topidx_t which_tree, p4est_quadrant_t *quadrant)
55d71ae5a4SJacob Faibussowitsch {
560a96aa3bSJed Brown   p4est_quadrant_t    root, rootcorner;
570a96aa3bSJed Brown   DMRefinePatternCtx *ctx;
580a96aa3bSJed Brown 
590a96aa3bSJed Brown   ctx = (DMRefinePatternCtx *)p4est->user_pointer;
600a96aa3bSJed Brown   if (quadrant->level >= ctx->maxLevel) return 0;
610a96aa3bSJed Brown 
620a96aa3bSJed Brown   root.x = root.y = 0;
630a96aa3bSJed Brown   #if defined(P4_TO_P8)
640a96aa3bSJed Brown   root.z = 0;
650a96aa3bSJed Brown   #endif
660a96aa3bSJed Brown   root.level = 0;
670a96aa3bSJed Brown   p4est_quadrant_corner_descendant(&root, &rootcorner, ctx->corner, quadrant->level);
680a96aa3bSJed Brown   if (p4est_quadrant_is_equal(quadrant, &rootcorner)) return 1;
690a96aa3bSJed Brown   return 0;
700a96aa3bSJed Brown }
710a96aa3bSJed Brown 
DMRefinePattern_Center(p4est_t * p4est,p4est_topidx_t which_tree,p4est_quadrant_t * quadrant)72d71ae5a4SJacob Faibussowitsch static int DMRefinePattern_Center(p4est_t *p4est, p4est_topidx_t which_tree, p4est_quadrant_t *quadrant)
73d71ae5a4SJacob Faibussowitsch {
740a96aa3bSJed Brown   int                 cid;
750a96aa3bSJed Brown   p4est_quadrant_t    ancestor, ancestorcorner;
760a96aa3bSJed Brown   DMRefinePatternCtx *ctx;
770a96aa3bSJed Brown 
780a96aa3bSJed Brown   ctx = (DMRefinePatternCtx *)p4est->user_pointer;
790a96aa3bSJed Brown   if (quadrant->level >= ctx->maxLevel) return 0;
800a96aa3bSJed Brown   if (quadrant->level <= 1) return 1;
810a96aa3bSJed Brown 
820a96aa3bSJed Brown   p4est_quadrant_ancestor(quadrant, 1, &ancestor);
830a96aa3bSJed Brown   cid = p4est_quadrant_child_id(&ancestor);
840a96aa3bSJed Brown   p4est_quadrant_corner_descendant(&ancestor, &ancestorcorner, P4EST_CHILDREN - 1 - cid, quadrant->level);
850a96aa3bSJed Brown   if (p4est_quadrant_is_equal(quadrant, &ancestorcorner)) return 1;
860a96aa3bSJed Brown   return 0;
870a96aa3bSJed Brown }
880a96aa3bSJed Brown 
DMRefinePattern_Fractal(p4est_t * p4est,p4est_topidx_t which_tree,p4est_quadrant_t * quadrant)89d71ae5a4SJacob Faibussowitsch static int DMRefinePattern_Fractal(p4est_t *p4est, p4est_topidx_t which_tree, p4est_quadrant_t *quadrant)
90d71ae5a4SJacob Faibussowitsch {
910a96aa3bSJed Brown   int                 cid;
920a96aa3bSJed Brown   DMRefinePatternCtx *ctx;
930a96aa3bSJed Brown 
940a96aa3bSJed Brown   ctx = (DMRefinePatternCtx *)p4est->user_pointer;
950a96aa3bSJed Brown   if (quadrant->level >= ctx->maxLevel) return 0;
960a96aa3bSJed Brown   if (!quadrant->level) return 1;
970a96aa3bSJed Brown   cid = p4est_quadrant_child_id(quadrant);
980a96aa3bSJed Brown   if (ctx->fractal[cid ^ ((int)(quadrant->level % P4EST_CHILDREN))]) return 1;
990a96aa3bSJed Brown   return 0;
1000a96aa3bSJed Brown }
1010a96aa3bSJed Brown 
1020a96aa3bSJed Brown   /* simplified from MurmurHash3 by Austin Appleby */
1030a96aa3bSJed Brown   #define DMPROT32(x, y) ((x << y) | (x >> (32 - y)))
DMPforestHash(const uint32_t * blocks,uint32_t nblocks)104d71ae5a4SJacob Faibussowitsch static uint32_t DMPforestHash(const uint32_t *blocks, uint32_t nblocks)
105d71ae5a4SJacob Faibussowitsch {
1060a96aa3bSJed Brown   uint32_t c1   = 0xcc9e2d51;
1070a96aa3bSJed Brown   uint32_t c2   = 0x1b873593;
1080a96aa3bSJed Brown   uint32_t r1   = 15;
1090a96aa3bSJed Brown   uint32_t r2   = 13;
1100a96aa3bSJed Brown   uint32_t m    = 5;
1110a96aa3bSJed Brown   uint32_t n    = 0xe6546b64;
1120a96aa3bSJed Brown   uint32_t hash = 0;
1130a96aa3bSJed Brown   int      len  = nblocks * 4;
1140a96aa3bSJed Brown   uint32_t i;
1150a96aa3bSJed Brown 
1160a96aa3bSJed Brown   for (i = 0; i < nblocks; i++) {
1170a96aa3bSJed Brown     uint32_t k;
1180a96aa3bSJed Brown 
1190a96aa3bSJed Brown     k = blocks[i];
1200a96aa3bSJed Brown     k *= c1;
1210a96aa3bSJed Brown     k = DMPROT32(k, r1);
1220a96aa3bSJed Brown     k *= c2;
1230a96aa3bSJed Brown 
1240a96aa3bSJed Brown     hash ^= k;
1250a96aa3bSJed Brown     hash = DMPROT32(hash, r2) * m + n;
1260a96aa3bSJed Brown   }
1270a96aa3bSJed Brown 
1280a96aa3bSJed Brown   hash ^= len;
1290a96aa3bSJed Brown   hash ^= (hash >> 16);
1300a96aa3bSJed Brown   hash *= 0x85ebca6b;
1310a96aa3bSJed Brown   hash ^= (hash >> 13);
1320a96aa3bSJed Brown   hash *= 0xc2b2ae35;
1330a96aa3bSJed Brown   hash ^= (hash >> 16);
1340a96aa3bSJed Brown 
1350a96aa3bSJed Brown   return hash;
1360a96aa3bSJed Brown }
1370a96aa3bSJed Brown 
1380a96aa3bSJed Brown   #if defined(UINT32_MAX)
1390a96aa3bSJed Brown     #define DMP4EST_HASH_MAX UINT32_MAX
1400a96aa3bSJed Brown   #else
1410a96aa3bSJed Brown     #define DMP4EST_HASH_MAX ((uint32_t)0xffffffff)
1420a96aa3bSJed Brown   #endif
1430a96aa3bSJed Brown 
DMRefinePattern_Hash(p4est_t * p4est,p4est_topidx_t which_tree,p4est_quadrant_t * quadrant)144d71ae5a4SJacob Faibussowitsch static int DMRefinePattern_Hash(p4est_t *p4est, p4est_topidx_t which_tree, p4est_quadrant_t *quadrant)
145d71ae5a4SJacob Faibussowitsch {
1460a96aa3bSJed Brown   uint32_t            data[5];
1470a96aa3bSJed Brown   uint32_t            result;
1480a96aa3bSJed Brown   DMRefinePatternCtx *ctx;
1490a96aa3bSJed Brown 
1500a96aa3bSJed Brown   ctx = (DMRefinePatternCtx *)p4est->user_pointer;
1510a96aa3bSJed Brown   if (quadrant->level >= ctx->maxLevel) return 0;
1520a96aa3bSJed Brown   data[0] = ((uint32_t)quadrant->level) << 24;
1530a96aa3bSJed Brown   data[1] = (uint32_t)which_tree;
1540a96aa3bSJed Brown   data[2] = (uint32_t)quadrant->x;
1550a96aa3bSJed Brown   data[3] = (uint32_t)quadrant->y;
1560a96aa3bSJed Brown   #if defined(P4_TO_P8)
1570a96aa3bSJed Brown   data[4] = (uint32_t)quadrant->z;
1580a96aa3bSJed Brown   #endif
1590a96aa3bSJed Brown 
1600a96aa3bSJed Brown   result = DMPforestHash(data, 2 + P4EST_DIM);
1610a96aa3bSJed Brown   if (((double)result / (double)DMP4EST_HASH_MAX) < ctx->hashLikelihood) return 1;
1620a96aa3bSJed Brown   return 0;
1630a96aa3bSJed Brown }
1640a96aa3bSJed Brown 
1650a96aa3bSJed Brown   #define DMConvert_pforest_plex _infix_pforest(DMConvert, _plex)
1660a96aa3bSJed Brown static PetscErrorCode DMConvert_pforest_plex(DM, DMType, DM *);
1670a96aa3bSJed Brown 
1680a96aa3bSJed Brown   #define DMFTopology_pforest _append_pforest(DMFTopology)
1690a96aa3bSJed Brown typedef struct {
1700a96aa3bSJed Brown   PetscInt              refct;
1710a96aa3bSJed Brown   p4est_connectivity_t *conn;
1720a96aa3bSJed Brown   p4est_geometry_t     *geom;
1730a96aa3bSJed Brown   PetscInt             *tree_face_to_uniq; /* p4est does not explicitly enumerate facets, but we must to keep track of labels */
1740a96aa3bSJed Brown } DMFTopology_pforest;
1750a96aa3bSJed Brown 
1760a96aa3bSJed Brown   #define DM_Forest_pforest _append_pforest(DM_Forest)
1770a96aa3bSJed Brown typedef struct {
1780a96aa3bSJed Brown   DMFTopology_pforest *topo;
1790a96aa3bSJed Brown   p4est_t             *forest;
1800a96aa3bSJed Brown   p4est_ghost_t       *ghost;
1810a96aa3bSJed Brown   p4est_lnodes_t      *lnodes;
1820a96aa3bSJed Brown   PetscBool            partition_for_coarsening;
1830a96aa3bSJed Brown   PetscBool            coarsen_hierarchy;
1840a96aa3bSJed Brown   PetscBool            labelsFinalized;
1850a96aa3bSJed Brown   PetscBool            adaptivitySuccess;
1860a96aa3bSJed Brown   PetscInt             cLocalStart;
1870a96aa3bSJed Brown   PetscInt             cLocalEnd;
1880a96aa3bSJed Brown   DM                   plex;
1890a96aa3bSJed Brown   char                *ghostName;
1900a96aa3bSJed Brown   PetscSF              pointAdaptToSelfSF;
1910a96aa3bSJed Brown   PetscSF              pointSelfToAdaptSF;
1920a96aa3bSJed Brown   PetscInt            *pointAdaptToSelfCids;
1930a96aa3bSJed Brown   PetscInt            *pointSelfToAdaptCids;
1940a96aa3bSJed Brown } DM_Forest_pforest;
1950a96aa3bSJed Brown 
1960a96aa3bSJed Brown   #define DM_Forest_geometry_pforest _append_pforest(DM_Forest_geometry)
1970a96aa3bSJed Brown typedef struct {
1980a96aa3bSJed Brown   DM base;
1990a96aa3bSJed Brown   PetscErrorCode (*map)(DM, PetscInt, PetscInt, const PetscReal[], PetscReal[], void *);
2000a96aa3bSJed Brown   void             *mapCtx;
2010a96aa3bSJed Brown   PetscInt          coordDim;
2020a96aa3bSJed Brown   p4est_geometry_t *inner;
2039371c9d4SSatish Balay } DM_Forest_geometry_pforest;
2040a96aa3bSJed Brown 
2050a96aa3bSJed Brown   #define GeometryMapping_pforest _append_pforest(GeometryMapping)
GeometryMapping_pforest(p4est_geometry_t * geom,p4est_topidx_t which_tree,const double abc[3],double xyz[3])206d71ae5a4SJacob Faibussowitsch static void GeometryMapping_pforest(p4est_geometry_t *geom, p4est_topidx_t which_tree, const double abc[3], double xyz[3])
207d71ae5a4SJacob Faibussowitsch {
2080a96aa3bSJed Brown   DM_Forest_geometry_pforest *geom_pforest = (DM_Forest_geometry_pforest *)geom->user;
2090a96aa3bSJed Brown   PetscReal                   PetscABC[3]  = {0.};
2100a96aa3bSJed Brown   PetscReal                   PetscXYZ[3]  = {0.};
2110a96aa3bSJed Brown   PetscInt                    i, d = PetscMin(3, geom_pforest->coordDim);
2120a96aa3bSJed Brown   double                      ABC[3];
2130a96aa3bSJed Brown   PetscErrorCode              ierr;
2140a96aa3bSJed Brown 
2150a96aa3bSJed Brown   (geom_pforest->inner->X)(geom_pforest->inner, which_tree, abc, ABC);
2160a96aa3bSJed Brown 
2170a96aa3bSJed Brown   for (i = 0; i < d; i++) PetscABC[i] = ABC[i];
2189371c9d4SSatish Balay   ierr = (geom_pforest->map)(geom_pforest->base, (PetscInt)which_tree, geom_pforest->coordDim, PetscABC, PetscXYZ, geom_pforest->mapCtx);
2199371c9d4SSatish Balay   PETSC_P4EST_ASSERT(!ierr);
2200a96aa3bSJed Brown   for (i = 0; i < d; i++) xyz[i] = PetscXYZ[i];
2210a96aa3bSJed Brown }
2220a96aa3bSJed Brown 
2230a96aa3bSJed Brown   #define GeometryDestroy_pforest _append_pforest(GeometryDestroy)
GeometryDestroy_pforest(p4est_geometry_t * geom)224d71ae5a4SJacob Faibussowitsch static void GeometryDestroy_pforest(p4est_geometry_t *geom)
225d71ae5a4SJacob Faibussowitsch {
2260a96aa3bSJed Brown   DM_Forest_geometry_pforest *geom_pforest = (DM_Forest_geometry_pforest *)geom->user;
2270a96aa3bSJed Brown   PetscErrorCode              ierr;
2280a96aa3bSJed Brown 
2290a96aa3bSJed Brown   p4est_geometry_destroy(geom_pforest->inner);
2309371c9d4SSatish Balay   ierr = PetscFree(geom->user);
2319371c9d4SSatish Balay   PETSC_P4EST_ASSERT(!ierr);
2329371c9d4SSatish Balay   ierr = PetscFree(geom);
2339371c9d4SSatish Balay   PETSC_P4EST_ASSERT(!ierr);
2340a96aa3bSJed Brown }
2350a96aa3bSJed Brown 
2360a96aa3bSJed Brown   #define DMFTopologyDestroy_pforest _append_pforest(DMFTopologyDestroy)
DMFTopologyDestroy_pforest(DMFTopology_pforest ** topo)237d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMFTopologyDestroy_pforest(DMFTopology_pforest **topo)
238d71ae5a4SJacob Faibussowitsch {
2390a96aa3bSJed Brown   PetscFunctionBegin;
2404ad8454bSPierre Jolivet   if (!*topo) PetscFunctionReturn(PETSC_SUCCESS);
2410a96aa3bSJed Brown   if (--((*topo)->refct) > 0) {
2420a96aa3bSJed Brown     *topo = NULL;
2433ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
2440a96aa3bSJed Brown   }
245792fecdfSBarry Smith   if ((*topo)->geom) PetscCallP4est(p4est_geometry_destroy, ((*topo)->geom));
246792fecdfSBarry Smith   PetscCallP4est(p4est_connectivity_destroy, ((*topo)->conn));
2479566063dSJacob Faibussowitsch   PetscCall(PetscFree((*topo)->tree_face_to_uniq));
2489566063dSJacob Faibussowitsch   PetscCall(PetscFree(*topo));
2490a96aa3bSJed Brown   *topo = NULL;
2503ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2510a96aa3bSJed Brown }
2520a96aa3bSJed Brown 
2530a96aa3bSJed Brown static PetscErrorCode PforestConnectivityEnumerateFacets(p4est_connectivity_t *, PetscInt **);
2540a96aa3bSJed Brown 
2550a96aa3bSJed Brown   #define DMFTopologyCreateBrick_pforest _append_pforest(DMFTopologyCreateBrick)
DMFTopologyCreateBrick_pforest(DM dm,PetscInt N[],PetscInt P[],PetscReal B[],DMFTopology_pforest ** topo,PetscBool useMorton)256d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMFTopologyCreateBrick_pforest(DM dm, PetscInt N[], PetscInt P[], PetscReal B[], DMFTopology_pforest **topo, PetscBool useMorton)
257d71ae5a4SJacob Faibussowitsch {
2580a96aa3bSJed Brown   double  *vertices;
2590a96aa3bSJed Brown   PetscInt i, numVerts;
2600a96aa3bSJed Brown 
2610a96aa3bSJed Brown   PetscFunctionBegin;
26228b400f6SJacob Faibussowitsch   PetscCheck(useMorton, PetscObjectComm((PetscObject)dm), PETSC_ERR_SUP, "Lexicographic ordering not implemented yet");
2634dfa11a4SJacob Faibussowitsch   PetscCall(PetscNew(topo));
2640a96aa3bSJed Brown 
2650a96aa3bSJed Brown   (*topo)->refct = 1;
2660a96aa3bSJed Brown   #if !defined(P4_TO_P8)
267792fecdfSBarry Smith   PetscCallP4estReturn((*topo)->conn, p4est_connectivity_new_brick, ((int)N[0], (int)N[1], (P[0] == DM_BOUNDARY_NONE) ? 0 : 1, (P[1] == DM_BOUNDARY_NONE) ? 0 : 1));
2680a96aa3bSJed Brown   #else
269792fecdfSBarry Smith   PetscCallP4estReturn((*topo)->conn, p8est_connectivity_new_brick, ((int)N[0], (int)N[1], (int)N[2], (P[0] == DM_BOUNDARY_NONE) ? 0 : 1, (P[1] == DM_BOUNDARY_NONE) ? 0 : 1, (P[2] == DM_BOUNDARY_NONE) ? 0 : 1));
2700a96aa3bSJed Brown   #endif
2710a96aa3bSJed Brown   numVerts = (*topo)->conn->num_vertices;
2720a96aa3bSJed Brown   vertices = (*topo)->conn->vertices;
2730a96aa3bSJed Brown   for (i = 0; i < 3 * numVerts; i++) {
2740a96aa3bSJed Brown     PetscInt j = i % 3;
2750a96aa3bSJed Brown 
2760a96aa3bSJed Brown     vertices[i] = B[2 * j] + (vertices[i] / N[j]) * (B[2 * j + 1] - B[2 * j]);
2770a96aa3bSJed Brown   }
2780a96aa3bSJed Brown   (*topo)->geom = NULL;
2799566063dSJacob Faibussowitsch   PetscCall(PforestConnectivityEnumerateFacets((*topo)->conn, &(*topo)->tree_face_to_uniq));
2803ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2810a96aa3bSJed Brown }
2820a96aa3bSJed Brown 
2830a96aa3bSJed Brown   #define DMFTopologyCreate_pforest _append_pforest(DMFTopologyCreate)
DMFTopologyCreate_pforest(DM dm,DMForestTopology topologyName,DMFTopology_pforest ** topo)284d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMFTopologyCreate_pforest(DM dm, DMForestTopology topologyName, DMFTopology_pforest **topo)
285d71ae5a4SJacob Faibussowitsch {
2860a96aa3bSJed Brown   const char *name = (const char *)topologyName;
2870a96aa3bSJed Brown   const char *prefix;
2880a96aa3bSJed Brown   PetscBool   isBrick, isShell, isSphere, isMoebius;
2890a96aa3bSJed Brown 
2900a96aa3bSJed Brown   PetscFunctionBegin;
2910a96aa3bSJed Brown   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
2924f572ea9SToby Isaac   PetscAssertPointer(name, 2);
2934f572ea9SToby Isaac   PetscAssertPointer(topo, 3);
2949566063dSJacob Faibussowitsch   PetscCall(PetscStrcmp(name, "brick", &isBrick));
2959566063dSJacob Faibussowitsch   PetscCall(PetscStrcmp(name, "shell", &isShell));
2969566063dSJacob Faibussowitsch   PetscCall(PetscStrcmp(name, "sphere", &isSphere));
2979566063dSJacob Faibussowitsch   PetscCall(PetscStrcmp(name, "moebius", &isMoebius));
2989566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetOptionsPrefix((PetscObject)dm, &prefix));
2990a96aa3bSJed Brown   if (isBrick) {
3000a96aa3bSJed Brown     PetscBool flgN, flgP, flgM, flgB, useMorton = PETSC_TRUE, periodic = PETSC_FALSE;
3010a96aa3bSJed Brown     PetscInt  N[3] = {2, 2, 2}, P[3] = {0, 0, 0}, nretN = P4EST_DIM, nretP = P4EST_DIM, nretB = 2 * P4EST_DIM, i;
3024fb89dddSMatthew G. Knepley     PetscReal B[6] = {0.0, 1.0, 0.0, 1.0, 0.0, 1.0}, Lstart[3] = {0., 0., 0.}, L[3] = {-1.0, -1.0, -1.0}, maxCell[3] = {-1.0, -1.0, -1.0};
3030a96aa3bSJed Brown 
3040a96aa3bSJed Brown     if (dm->setfromoptionscalled) {
3059566063dSJacob Faibussowitsch       PetscCall(PetscOptionsGetIntArray(((PetscObject)dm)->options, prefix, "-dm_p4est_brick_size", N, &nretN, &flgN));
3069566063dSJacob Faibussowitsch       PetscCall(PetscOptionsGetIntArray(((PetscObject)dm)->options, prefix, "-dm_p4est_brick_periodicity", P, &nretP, &flgP));
3079566063dSJacob Faibussowitsch       PetscCall(PetscOptionsGetRealArray(((PetscObject)dm)->options, prefix, "-dm_p4est_brick_bounds", B, &nretB, &flgB));
3089566063dSJacob Faibussowitsch       PetscCall(PetscOptionsGetBool(((PetscObject)dm)->options, prefix, "-dm_p4est_brick_use_morton_curve", &useMorton, &flgM));
3091dca8a05SBarry Smith       PetscCheck(!flgN || nretN == P4EST_DIM, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_SIZ, "Need to give %d sizes in -dm_p4est_brick_size, gave %" PetscInt_FMT, P4EST_DIM, nretN);
3101dca8a05SBarry Smith       PetscCheck(!flgP || nretP == P4EST_DIM, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_SIZ, "Need to give %d periodicities in -dm_p4est_brick_periodicity, gave %" PetscInt_FMT, P4EST_DIM, nretP);
3111dca8a05SBarry Smith       PetscCheck(!flgB || nretB == 2 * P4EST_DIM, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_SIZ, "Need to give %d bounds in -dm_p4est_brick_bounds, gave %" PetscInt_FMT, P4EST_DIM, nretP);
3120a96aa3bSJed Brown     }
3130a96aa3bSJed Brown     for (i = 0; i < P4EST_DIM; i++) {
3140a96aa3bSJed Brown       P[i]     = (P[i] ? DM_BOUNDARY_PERIODIC : DM_BOUNDARY_NONE);
3150a96aa3bSJed Brown       periodic = (PetscBool)(P[i] || periodic);
3160a96aa3bSJed Brown       if (!flgB) B[2 * i + 1] = N[i];
3176858538eSMatthew G. Knepley       if (P[i]) {
3184fb89dddSMatthew G. Knepley         Lstart[i]  = B[2 * i + 0];
3194fb89dddSMatthew G. Knepley         L[i]       = B[2 * i + 1] - B[2 * i + 0];
3206858538eSMatthew G. Knepley         maxCell[i] = 1.1 * (L[i] / N[i]);
3216858538eSMatthew G. Knepley       }
3220a96aa3bSJed Brown     }
3239566063dSJacob Faibussowitsch     PetscCall(DMFTopologyCreateBrick_pforest(dm, N, P, B, topo, useMorton));
3244fb89dddSMatthew G. Knepley     if (periodic) PetscCall(DMSetPeriodicity(dm, maxCell, Lstart, L));
3250a96aa3bSJed Brown   } else {
3264dfa11a4SJacob Faibussowitsch     PetscCall(PetscNew(topo));
3270a96aa3bSJed Brown 
3280a96aa3bSJed Brown     (*topo)->refct = 1;
329792fecdfSBarry Smith     PetscCallP4estReturn((*topo)->conn, p4est_connectivity_new_byname, (name));
3300a96aa3bSJed Brown     (*topo)->geom = NULL;
3311baa6e33SBarry Smith     if (isMoebius) PetscCall(DMSetCoordinateDim(dm, 3));
3320a96aa3bSJed Brown   #if defined(P4_TO_P8)
3330a96aa3bSJed Brown     if (isShell) {
3340a96aa3bSJed Brown       PetscReal R2 = 1., R1 = .55;
3350a96aa3bSJed Brown 
3360a96aa3bSJed Brown       if (dm->setfromoptionscalled) {
3379566063dSJacob Faibussowitsch         PetscCall(PetscOptionsGetReal(((PetscObject)dm)->options, prefix, "-dm_p4est_shell_outer_radius", &R2, NULL));
3389566063dSJacob Faibussowitsch         PetscCall(PetscOptionsGetReal(((PetscObject)dm)->options, prefix, "-dm_p4est_shell_inner_radius", &R1, NULL));
3390a96aa3bSJed Brown       }
340792fecdfSBarry Smith       PetscCallP4estReturn((*topo)->geom, p8est_geometry_new_shell, ((*topo)->conn, R2, R1));
3410a96aa3bSJed Brown     } else if (isSphere) {
3420a96aa3bSJed Brown       PetscReal R2 = 1., R1 = 0.191728, R0 = 0.039856;
3430a96aa3bSJed Brown 
3440a96aa3bSJed Brown       if (dm->setfromoptionscalled) {
3459566063dSJacob Faibussowitsch         PetscCall(PetscOptionsGetReal(((PetscObject)dm)->options, prefix, "-dm_p4est_sphere_outer_radius", &R2, NULL));
3469566063dSJacob Faibussowitsch         PetscCall(PetscOptionsGetReal(((PetscObject)dm)->options, prefix, "-dm_p4est_sphere_inner_radius", &R1, NULL));
3479566063dSJacob Faibussowitsch         PetscCall(PetscOptionsGetReal(((PetscObject)dm)->options, prefix, "-dm_p4est_sphere_core_radius", &R0, NULL));
3480a96aa3bSJed Brown       }
349792fecdfSBarry Smith       PetscCallP4estReturn((*topo)->geom, p8est_geometry_new_sphere, ((*topo)->conn, R2, R1, R0));
3500a96aa3bSJed Brown     }
3510a96aa3bSJed Brown   #endif
3529566063dSJacob Faibussowitsch     PetscCall(PforestConnectivityEnumerateFacets((*topo)->conn, &(*topo)->tree_face_to_uniq));
3530a96aa3bSJed Brown   }
3543ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3550a96aa3bSJed Brown }
3560a96aa3bSJed Brown 
3570a96aa3bSJed Brown   #define DMConvert_plex_pforest _append_pforest(DMConvert_plex)
DMConvert_plex_pforest(DM dm,DMType newtype,DM * pforest)358d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMConvert_plex_pforest(DM dm, DMType newtype, DM *pforest)
359d71ae5a4SJacob Faibussowitsch {
3600a96aa3bSJed Brown   MPI_Comm  comm;
3610a96aa3bSJed Brown   PetscBool isPlex;
3620a96aa3bSJed Brown   PetscInt  dim;
3630a96aa3bSJed Brown   void     *ctx;
3640a96aa3bSJed Brown 
3650a96aa3bSJed Brown   PetscFunctionBegin;
3660a96aa3bSJed Brown   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
3670a96aa3bSJed Brown   comm = PetscObjectComm((PetscObject)dm);
3689566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)dm, DMPLEX, &isPlex));
36928b400f6SJacob Faibussowitsch   PetscCheck(isPlex, comm, PETSC_ERR_ARG_WRONG, "Expected DM type %s, got %s", DMPLEX, ((PetscObject)dm)->type_name);
3709566063dSJacob Faibussowitsch   PetscCall(DMGetDimension(dm, &dim));
37163a3b9bcSJacob Faibussowitsch   PetscCheck(dim == P4EST_DIM, comm, PETSC_ERR_ARG_WRONG, "Expected DM dimension %d, got %" PetscInt_FMT, P4EST_DIM, dim);
3729566063dSJacob Faibussowitsch   PetscCall(DMCreate(comm, pforest));
3739566063dSJacob Faibussowitsch   PetscCall(DMSetType(*pforest, DMPFOREST));
3749566063dSJacob Faibussowitsch   PetscCall(DMForestSetBaseDM(*pforest, dm));
3759566063dSJacob Faibussowitsch   PetscCall(DMGetApplicationContext(dm, &ctx));
3769566063dSJacob Faibussowitsch   PetscCall(DMSetApplicationContext(*pforest, ctx));
3779566063dSJacob Faibussowitsch   PetscCall(DMCopyDisc(dm, *pforest));
3783ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3790a96aa3bSJed Brown }
3800a96aa3bSJed Brown 
3810a96aa3bSJed Brown   #define DMForestDestroy_pforest _append_pforest(DMForestDestroy)
DMForestDestroy_pforest(DM dm)382d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMForestDestroy_pforest(DM dm)
383d71ae5a4SJacob Faibussowitsch {
3840a96aa3bSJed Brown   DM_Forest         *forest  = (DM_Forest *)dm->data;
3850a96aa3bSJed Brown   DM_Forest_pforest *pforest = (DM_Forest_pforest *)forest->data;
3860a96aa3bSJed Brown 
3870a96aa3bSJed Brown   PetscFunctionBegin;
3880a96aa3bSJed Brown   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
389792fecdfSBarry Smith   if (pforest->lnodes) PetscCallP4est(p4est_lnodes_destroy, (pforest->lnodes));
3900a96aa3bSJed Brown   pforest->lnodes = NULL;
391792fecdfSBarry Smith   if (pforest->ghost) PetscCallP4est(p4est_ghost_destroy, (pforest->ghost));
3920a96aa3bSJed Brown   pforest->ghost = NULL;
393792fecdfSBarry Smith   if (pforest->forest) PetscCallP4est(p4est_destroy, (pforest->forest));
3940a96aa3bSJed Brown   pforest->forest = NULL;
3959566063dSJacob Faibussowitsch   PetscCall(DMFTopologyDestroy_pforest(&pforest->topo));
3969566063dSJacob Faibussowitsch   PetscCall(PetscFree(pforest->ghostName));
3979566063dSJacob Faibussowitsch   PetscCall(DMDestroy(&pforest->plex));
3989566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&pforest->pointAdaptToSelfSF));
3999566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&pforest->pointSelfToAdaptSF));
4009566063dSJacob Faibussowitsch   PetscCall(PetscFree(pforest->pointAdaptToSelfCids));
4019566063dSJacob Faibussowitsch   PetscCall(PetscFree(pforest->pointSelfToAdaptCids));
4029566063dSJacob Faibussowitsch   PetscCall(PetscFree(forest->data));
4033ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
4040a96aa3bSJed Brown }
4050a96aa3bSJed Brown 
4060a96aa3bSJed Brown   #define DMForestTemplate_pforest _append_pforest(DMForestTemplate)
DMForestTemplate_pforest(DM dm,DM tdm)407d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMForestTemplate_pforest(DM dm, DM tdm)
408d71ae5a4SJacob Faibussowitsch {
4090a96aa3bSJed Brown   DM_Forest_pforest *pforest  = (DM_Forest_pforest *)((DM_Forest *)dm->data)->data;
4100a96aa3bSJed Brown   DM_Forest_pforest *tpforest = (DM_Forest_pforest *)((DM_Forest *)tdm->data)->data;
4110a96aa3bSJed Brown 
4120a96aa3bSJed Brown   PetscFunctionBegin;
4130a96aa3bSJed Brown   if (pforest->topo) pforest->topo->refct++;
414f4f49eeaSPierre Jolivet   PetscCall(DMFTopologyDestroy_pforest(&tpforest->topo));
4150a96aa3bSJed Brown   tpforest->topo = pforest->topo;
4163ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
4170a96aa3bSJed Brown }
4180a96aa3bSJed Brown 
4190a96aa3bSJed Brown   #define DMPlexCreateConnectivity_pforest _append_pforest(DMPlexCreateConnectivity)
4200a96aa3bSJed Brown static PetscErrorCode DMPlexCreateConnectivity_pforest(DM, p4est_connectivity_t **, PetscInt **);
4210a96aa3bSJed Brown 
4229371c9d4SSatish Balay typedef struct _PforestAdaptCtx {
4230a96aa3bSJed Brown   PetscInt  maxLevel;
4240a96aa3bSJed Brown   PetscInt  minLevel;
4250a96aa3bSJed Brown   PetscInt  currLevel;
4260a96aa3bSJed Brown   PetscBool anyChange;
4279371c9d4SSatish Balay } PforestAdaptCtx;
4280a96aa3bSJed Brown 
pforest_coarsen_currlevel(p4est_t * p4est,p4est_topidx_t which_tree,p4est_quadrant_t * quadrants[])429d71ae5a4SJacob Faibussowitsch static int pforest_coarsen_currlevel(p4est_t *p4est, p4est_topidx_t which_tree, p4est_quadrant_t *quadrants[])
430d71ae5a4SJacob Faibussowitsch {
4310a96aa3bSJed Brown   PforestAdaptCtx *ctx       = (PforestAdaptCtx *)p4est->user_pointer;
4320a96aa3bSJed Brown   PetscInt         minLevel  = ctx->minLevel;
4330a96aa3bSJed Brown   PetscInt         currLevel = ctx->currLevel;
4340a96aa3bSJed Brown 
4350a96aa3bSJed Brown   if (quadrants[0]->level <= minLevel) return 0;
4360a96aa3bSJed Brown   return (int)((PetscInt)quadrants[0]->level == currLevel);
4370a96aa3bSJed Brown }
4380a96aa3bSJed Brown 
pforest_coarsen_uniform(p4est_t * p4est,p4est_topidx_t which_tree,p4est_quadrant_t * quadrants[])439d71ae5a4SJacob Faibussowitsch static int pforest_coarsen_uniform(p4est_t *p4est, p4est_topidx_t which_tree, p4est_quadrant_t *quadrants[])
440d71ae5a4SJacob Faibussowitsch {
4410a96aa3bSJed Brown   PforestAdaptCtx *ctx      = (PforestAdaptCtx *)p4est->user_pointer;
4420a96aa3bSJed Brown   PetscInt         minLevel = ctx->minLevel;
4430a96aa3bSJed Brown 
4440a96aa3bSJed Brown   return (int)((PetscInt)quadrants[0]->level > minLevel);
4450a96aa3bSJed Brown }
4460a96aa3bSJed Brown 
pforest_coarsen_flag_any(p4est_t * p4est,p4est_topidx_t which_tree,p4est_quadrant_t * quadrants[])447d71ae5a4SJacob Faibussowitsch static int pforest_coarsen_flag_any(p4est_t *p4est, p4est_topidx_t which_tree, p4est_quadrant_t *quadrants[])
448d71ae5a4SJacob Faibussowitsch {
4490a96aa3bSJed Brown   PetscInt         i;
4500a96aa3bSJed Brown   PetscBool        any      = PETSC_FALSE;
4510a96aa3bSJed Brown   PforestAdaptCtx *ctx      = (PforestAdaptCtx *)p4est->user_pointer;
4520a96aa3bSJed Brown   PetscInt         minLevel = ctx->minLevel;
4530a96aa3bSJed Brown 
4540a96aa3bSJed Brown   if (quadrants[0]->level <= minLevel) return 0;
4550a96aa3bSJed Brown   for (i = 0; i < P4EST_CHILDREN; i++) {
4560a96aa3bSJed Brown     if (quadrants[i]->p.user_int == DM_ADAPT_KEEP) {
4570a96aa3bSJed Brown       any = PETSC_FALSE;
4580a96aa3bSJed Brown       break;
4590a96aa3bSJed Brown     }
4600a96aa3bSJed Brown     if (quadrants[i]->p.user_int == DM_ADAPT_COARSEN) {
4610a96aa3bSJed Brown       any = PETSC_TRUE;
4620a96aa3bSJed Brown       break;
4630a96aa3bSJed Brown     }
4640a96aa3bSJed Brown   }
4650a96aa3bSJed Brown   return any ? 1 : 0;
4660a96aa3bSJed Brown }
4670a96aa3bSJed Brown 
pforest_coarsen_flag_all(p4est_t * p4est,p4est_topidx_t which_tree,p4est_quadrant_t * quadrants[])468d71ae5a4SJacob Faibussowitsch static int pforest_coarsen_flag_all(p4est_t *p4est, p4est_topidx_t which_tree, p4est_quadrant_t *quadrants[])
469d71ae5a4SJacob Faibussowitsch {
4700a96aa3bSJed Brown   PetscInt         i;
4710a96aa3bSJed Brown   PetscBool        all      = PETSC_TRUE;
4720a96aa3bSJed Brown   PforestAdaptCtx *ctx      = (PforestAdaptCtx *)p4est->user_pointer;
4730a96aa3bSJed Brown   PetscInt         minLevel = ctx->minLevel;
4740a96aa3bSJed Brown 
4750a96aa3bSJed Brown   if (quadrants[0]->level <= minLevel) return 0;
4760a96aa3bSJed Brown   for (i = 0; i < P4EST_CHILDREN; i++) {
4770a96aa3bSJed Brown     if (quadrants[i]->p.user_int != DM_ADAPT_COARSEN) {
4780a96aa3bSJed Brown       all = PETSC_FALSE;
4790a96aa3bSJed Brown       break;
4800a96aa3bSJed Brown     }
4810a96aa3bSJed Brown   }
4820a96aa3bSJed Brown   return all ? 1 : 0;
4830a96aa3bSJed Brown }
4840a96aa3bSJed Brown 
pforest_init_determine(p4est_t * p4est,p4est_topidx_t which_tree,p4est_quadrant_t * quadrant)485d71ae5a4SJacob Faibussowitsch static void pforest_init_determine(p4est_t *p4est, p4est_topidx_t which_tree, p4est_quadrant_t *quadrant)
486d71ae5a4SJacob Faibussowitsch {
4870a96aa3bSJed Brown   quadrant->p.user_int = DM_ADAPT_DETERMINE;
4880a96aa3bSJed Brown }
4890a96aa3bSJed Brown 
pforest_refine_uniform(p4est_t * p4est,p4est_topidx_t which_tree,p4est_quadrant_t * quadrant)490d71ae5a4SJacob Faibussowitsch static int pforest_refine_uniform(p4est_t *p4est, p4est_topidx_t which_tree, p4est_quadrant_t *quadrant)
491d71ae5a4SJacob Faibussowitsch {
4920a96aa3bSJed Brown   PforestAdaptCtx *ctx      = (PforestAdaptCtx *)p4est->user_pointer;
4930a96aa3bSJed Brown   PetscInt         maxLevel = ctx->maxLevel;
4940a96aa3bSJed Brown 
4954ad8454bSPierre Jolivet   return (PetscInt)quadrant->level < maxLevel;
4960a96aa3bSJed Brown }
4970a96aa3bSJed Brown 
pforest_refine_flag(p4est_t * p4est,p4est_topidx_t which_tree,p4est_quadrant_t * quadrant)498d71ae5a4SJacob Faibussowitsch static int pforest_refine_flag(p4est_t *p4est, p4est_topidx_t which_tree, p4est_quadrant_t *quadrant)
499d71ae5a4SJacob Faibussowitsch {
5000a96aa3bSJed Brown   PforestAdaptCtx *ctx      = (PforestAdaptCtx *)p4est->user_pointer;
5010a96aa3bSJed Brown   PetscInt         maxLevel = ctx->maxLevel;
5020a96aa3bSJed Brown 
5030a96aa3bSJed Brown   if ((PetscInt)quadrant->level >= maxLevel) return 0;
5040a96aa3bSJed Brown 
5054ad8454bSPierre Jolivet   return quadrant->p.user_int == DM_ADAPT_REFINE;
5060a96aa3bSJed Brown }
5070a96aa3bSJed Brown 
DMPforestComputeLocalCellTransferSF_loop(p4est_t * p4estFrom,PetscInt FromOffset,p4est_t * p4estTo,PetscInt ToOffset,p4est_topidx_t flt,p4est_topidx_t llt,PetscInt * toFineLeavesCount,PetscInt * toLeaves,PetscSFNode * fromRoots,PetscInt * fromFineLeavesCount,PetscInt * fromLeaves,PetscSFNode * toRoots)508d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPforestComputeLocalCellTransferSF_loop(p4est_t *p4estFrom, PetscInt FromOffset, p4est_t *p4estTo, PetscInt ToOffset, p4est_topidx_t flt, p4est_topidx_t llt, PetscInt *toFineLeavesCount, PetscInt *toLeaves, PetscSFNode *fromRoots, PetscInt *fromFineLeavesCount, PetscInt *fromLeaves, PetscSFNode *toRoots)
509d71ae5a4SJacob Faibussowitsch {
5100a96aa3bSJed Brown   PetscMPIInt    rank = p4estFrom->mpirank;
5110a96aa3bSJed Brown   p4est_topidx_t t;
5120a96aa3bSJed Brown   PetscInt       toFineLeaves = 0, fromFineLeaves = 0;
5130a96aa3bSJed Brown 
5140a96aa3bSJed Brown   PetscFunctionBegin;
5155a96e07bSStefano Zampini   /* -Wmaybe-uninitialized */
5165a96e07bSStefano Zampini   *toFineLeavesCount   = 0;
5175a96e07bSStefano Zampini   *fromFineLeavesCount = 0;
5180a96aa3bSJed Brown   for (t = flt; t <= llt; t++) { /* count roots and leaves */
5190a96aa3bSJed Brown     p4est_tree_t     *treeFrom  = &(((p4est_tree_t *)p4estFrom->trees->array)[t]);
5200a96aa3bSJed Brown     p4est_tree_t     *treeTo    = &(((p4est_tree_t *)p4estTo->trees->array)[t]);
5210a96aa3bSJed Brown     p4est_quadrant_t *firstFrom = &treeFrom->first_desc;
5220a96aa3bSJed Brown     p4est_quadrant_t *firstTo   = &treeTo->first_desc;
5230a96aa3bSJed Brown     PetscInt          numFrom   = (PetscInt)treeFrom->quadrants.elem_count;
5240a96aa3bSJed Brown     PetscInt          numTo     = (PetscInt)treeTo->quadrants.elem_count;
5250a96aa3bSJed Brown     p4est_quadrant_t *quadsFrom = (p4est_quadrant_t *)treeFrom->quadrants.array;
5260a96aa3bSJed Brown     p4est_quadrant_t *quadsTo   = (p4est_quadrant_t *)treeTo->quadrants.array;
5270a96aa3bSJed Brown     PetscInt          currentFrom, currentTo;
5280a96aa3bSJed Brown     PetscInt          treeOffsetFrom = (PetscInt)treeFrom->quadrants_offset;
5290a96aa3bSJed Brown     PetscInt          treeOffsetTo   = (PetscInt)treeTo->quadrants_offset;
5300a96aa3bSJed Brown     int               comp;
5310a96aa3bSJed Brown 
532792fecdfSBarry Smith     PetscCallP4estReturn(comp, p4est_quadrant_is_equal, (firstFrom, firstTo));
53328b400f6SJacob Faibussowitsch     PetscCheck(comp, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "non-matching partitions");
5340a96aa3bSJed Brown 
5350a96aa3bSJed Brown     for (currentFrom = 0, currentTo = 0; currentFrom < numFrom && currentTo < numTo;) {
5360a96aa3bSJed Brown       p4est_quadrant_t *quadFrom = &quadsFrom[currentFrom];
5370a96aa3bSJed Brown       p4est_quadrant_t *quadTo   = &quadsTo[currentTo];
5380a96aa3bSJed Brown 
5390a96aa3bSJed Brown       if (quadFrom->level == quadTo->level) {
5400a96aa3bSJed Brown         if (toLeaves) {
5410a96aa3bSJed Brown           toLeaves[toFineLeaves]        = currentTo + treeOffsetTo + ToOffset;
5420a96aa3bSJed Brown           fromRoots[toFineLeaves].rank  = rank;
5430a96aa3bSJed Brown           fromRoots[toFineLeaves].index = currentFrom + treeOffsetFrom + FromOffset;
5440a96aa3bSJed Brown         }
5450a96aa3bSJed Brown         toFineLeaves++;
5460a96aa3bSJed Brown         currentFrom++;
5470a96aa3bSJed Brown         currentTo++;
5480a96aa3bSJed Brown       } else {
5490a96aa3bSJed Brown         int fromIsAncestor;
5500a96aa3bSJed Brown 
551792fecdfSBarry Smith         PetscCallP4estReturn(fromIsAncestor, p4est_quadrant_is_ancestor, (quadFrom, quadTo));
5520a96aa3bSJed Brown         if (fromIsAncestor) {
5530a96aa3bSJed Brown           p4est_quadrant_t lastDesc;
5540a96aa3bSJed Brown 
5550a96aa3bSJed Brown           if (toLeaves) {
5560a96aa3bSJed Brown             toLeaves[toFineLeaves]        = currentTo + treeOffsetTo + ToOffset;
5570a96aa3bSJed Brown             fromRoots[toFineLeaves].rank  = rank;
5580a96aa3bSJed Brown             fromRoots[toFineLeaves].index = currentFrom + treeOffsetFrom + FromOffset;
5590a96aa3bSJed Brown           }
5600a96aa3bSJed Brown           toFineLeaves++;
5610a96aa3bSJed Brown           currentTo++;
562792fecdfSBarry Smith           PetscCallP4est(p4est_quadrant_last_descendant, (quadFrom, &lastDesc, quadTo->level));
563792fecdfSBarry Smith           PetscCallP4estReturn(comp, p4est_quadrant_is_equal, (quadTo, &lastDesc));
5640a96aa3bSJed Brown           if (comp) currentFrom++;
5650a96aa3bSJed Brown         } else {
5660a96aa3bSJed Brown           p4est_quadrant_t lastDesc;
5670a96aa3bSJed Brown 
5680a96aa3bSJed Brown           if (fromLeaves) {
5690a96aa3bSJed Brown             fromLeaves[fromFineLeaves]    = currentFrom + treeOffsetFrom + FromOffset;
5700a96aa3bSJed Brown             toRoots[fromFineLeaves].rank  = rank;
5710a96aa3bSJed Brown             toRoots[fromFineLeaves].index = currentTo + treeOffsetTo + ToOffset;
5720a96aa3bSJed Brown           }
5730a96aa3bSJed Brown           fromFineLeaves++;
5740a96aa3bSJed Brown           currentFrom++;
575792fecdfSBarry Smith           PetscCallP4est(p4est_quadrant_last_descendant, (quadTo, &lastDesc, quadFrom->level));
576792fecdfSBarry Smith           PetscCallP4estReturn(comp, p4est_quadrant_is_equal, (quadFrom, &lastDesc));
5770a96aa3bSJed Brown           if (comp) currentTo++;
5780a96aa3bSJed Brown         }
5790a96aa3bSJed Brown       }
5800a96aa3bSJed Brown     }
5810a96aa3bSJed Brown   }
5820a96aa3bSJed Brown   *toFineLeavesCount   = toFineLeaves;
5830a96aa3bSJed Brown   *fromFineLeavesCount = fromFineLeaves;
5843ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
5850a96aa3bSJed Brown }
5860a96aa3bSJed Brown 
5870a96aa3bSJed Brown /* Compute the maximum level across all the trees */
DMPforestGetRefinementLevel(DM dm,PetscInt * lev)588d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPforestGetRefinementLevel(DM dm, PetscInt *lev)
589d71ae5a4SJacob Faibussowitsch {
5900a96aa3bSJed Brown   p4est_topidx_t     t, flt, llt;
5910a96aa3bSJed Brown   DM_Forest         *forest      = (DM_Forest *)dm->data;
5920a96aa3bSJed Brown   DM_Forest_pforest *pforest     = (DM_Forest_pforest *)forest->data;
5930a96aa3bSJed Brown   PetscInt           maxlevelloc = 0;
5940a96aa3bSJed Brown   p4est_t           *p4est;
5950a96aa3bSJed Brown 
5960a96aa3bSJed Brown   PetscFunctionBegin;
59728b400f6SJacob Faibussowitsch   PetscCheck(pforest, PetscObjectComm((PetscObject)dm), PETSC_ERR_PLIB, "Missing DM_Forest_pforest");
59828b400f6SJacob Faibussowitsch   PetscCheck(pforest->forest, PetscObjectComm((PetscObject)dm), PETSC_ERR_PLIB, "Missing p4est_t");
5990a96aa3bSJed Brown   p4est = pforest->forest;
6000a96aa3bSJed Brown   flt   = p4est->first_local_tree;
6010a96aa3bSJed Brown   llt   = p4est->last_local_tree;
6020a96aa3bSJed Brown   for (t = flt; t <= llt; t++) {
6030a96aa3bSJed Brown     p4est_tree_t *tree = &(((p4est_tree_t *)p4est->trees->array)[t]);
6040a96aa3bSJed Brown     maxlevelloc        = PetscMax((PetscInt)tree->maxlevel, maxlevelloc);
6050a96aa3bSJed Brown   }
606462c564dSBarry Smith   PetscCallMPI(MPIU_Allreduce(&maxlevelloc, lev, 1, MPIU_INT, MPI_MAX, PetscObjectComm((PetscObject)dm)));
6073ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6080a96aa3bSJed Brown }
6090a96aa3bSJed Brown 
6100a96aa3bSJed Brown /* Puts identity in coarseToFine */
6110a96aa3bSJed Brown /* assumes a matching partition */
DMPforestComputeLocalCellTransferSF(MPI_Comm comm,p4est_t * p4estFrom,PetscInt FromOffset,p4est_t * p4estTo,PetscInt ToOffset,PetscSF * fromCoarseToFine,PetscSF * toCoarseFromFine)612d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPforestComputeLocalCellTransferSF(MPI_Comm comm, p4est_t *p4estFrom, PetscInt FromOffset, p4est_t *p4estTo, PetscInt ToOffset, PetscSF *fromCoarseToFine, PetscSF *toCoarseFromFine)
613d71ae5a4SJacob Faibussowitsch {
6140a96aa3bSJed Brown   p4est_topidx_t flt, llt;
6150a96aa3bSJed Brown   PetscSF        fromCoarse, toCoarse;
6160a96aa3bSJed Brown   PetscInt       numRootsFrom, numRootsTo, numLeavesFrom, numLeavesTo;
6170a96aa3bSJed Brown   PetscInt      *fromLeaves = NULL, *toLeaves = NULL;
6180a96aa3bSJed Brown   PetscSFNode   *fromRoots = NULL, *toRoots = NULL;
6190a96aa3bSJed Brown 
6200a96aa3bSJed Brown   PetscFunctionBegin;
6210a96aa3bSJed Brown   flt = p4estFrom->first_local_tree;
6220a96aa3bSJed Brown   llt = p4estFrom->last_local_tree;
6239566063dSJacob Faibussowitsch   PetscCall(PetscSFCreate(comm, &fromCoarse));
62448a46eb9SPierre Jolivet   if (toCoarseFromFine) PetscCall(PetscSFCreate(comm, &toCoarse));
6250a96aa3bSJed Brown   numRootsFrom = p4estFrom->local_num_quadrants + FromOffset;
6260a96aa3bSJed Brown   numRootsTo   = p4estTo->local_num_quadrants + ToOffset;
6279566063dSJacob Faibussowitsch   PetscCall(DMPforestComputeLocalCellTransferSF_loop(p4estFrom, FromOffset, p4estTo, ToOffset, flt, llt, &numLeavesTo, NULL, NULL, &numLeavesFrom, NULL, NULL));
6289566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(numLeavesTo, &toLeaves));
6299566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(numLeavesTo, &fromRoots));
6300a96aa3bSJed Brown   if (toCoarseFromFine) {
6319566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(numLeavesFrom, &fromLeaves));
6329566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(numLeavesFrom, &fromRoots));
6330a96aa3bSJed Brown   }
6349566063dSJacob Faibussowitsch   PetscCall(DMPforestComputeLocalCellTransferSF_loop(p4estFrom, FromOffset, p4estTo, ToOffset, flt, llt, &numLeavesTo, toLeaves, fromRoots, &numLeavesFrom, fromLeaves, toRoots));
6350a96aa3bSJed Brown   if (!ToOffset && (numLeavesTo == numRootsTo)) { /* compress */
6369566063dSJacob Faibussowitsch     PetscCall(PetscFree(toLeaves));
6379566063dSJacob Faibussowitsch     PetscCall(PetscSFSetGraph(fromCoarse, numRootsFrom, numLeavesTo, NULL, PETSC_OWN_POINTER, fromRoots, PETSC_OWN_POINTER));
6381baa6e33SBarry Smith   } else PetscCall(PetscSFSetGraph(fromCoarse, numRootsFrom, numLeavesTo, toLeaves, PETSC_OWN_POINTER, fromRoots, PETSC_OWN_POINTER));
6390a96aa3bSJed Brown   *fromCoarseToFine = fromCoarse;
6400a96aa3bSJed Brown   if (toCoarseFromFine) {
6419566063dSJacob Faibussowitsch     PetscCall(PetscSFSetGraph(toCoarse, numRootsTo, numLeavesFrom, fromLeaves, PETSC_OWN_POINTER, toRoots, PETSC_OWN_POINTER));
6420a96aa3bSJed Brown     *toCoarseFromFine = toCoarse;
6430a96aa3bSJed Brown   }
6443ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6450a96aa3bSJed Brown }
6460a96aa3bSJed Brown 
6470a96aa3bSJed Brown /* range of processes whose B sections overlap this ranks A section */
DMPforestComputeOverlappingRanks(PetscMPIInt size,PetscMPIInt rank,p4est_t * p4estA,p4est_t * p4estB,PetscInt * startB,PetscInt * endB)648d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPforestComputeOverlappingRanks(PetscMPIInt size, PetscMPIInt rank, p4est_t *p4estA, p4est_t *p4estB, PetscInt *startB, PetscInt *endB)
649d71ae5a4SJacob Faibussowitsch {
650f4f49eeaSPierre Jolivet   p4est_quadrant_t *myCoarseStart = &p4estA->global_first_position[rank];
651f4f49eeaSPierre Jolivet   p4est_quadrant_t *myCoarseEnd   = &p4estA->global_first_position[rank + 1];
6520a96aa3bSJed Brown   p4est_quadrant_t *globalFirstB  = p4estB->global_first_position;
6530a96aa3bSJed Brown 
6540a96aa3bSJed Brown   PetscFunctionBegin;
6550a96aa3bSJed Brown   *startB = -1;
6560a96aa3bSJed Brown   *endB   = -1;
6570a96aa3bSJed Brown   if (p4estA->local_num_quadrants) {
6580a96aa3bSJed Brown     PetscInt lo, hi, guess;
6590a96aa3bSJed Brown     /* binary search to find interval containing myCoarseStart */
6600a96aa3bSJed Brown     lo    = 0;
6610a96aa3bSJed Brown     hi    = size;
6620a96aa3bSJed Brown     guess = rank;
6630a96aa3bSJed Brown     while (1) {
6640a96aa3bSJed Brown       int startCompMy, myCompEnd;
6650a96aa3bSJed Brown 
666792fecdfSBarry Smith       PetscCallP4estReturn(startCompMy, p4est_quadrant_compare_piggy, (&globalFirstB[guess], myCoarseStart));
667792fecdfSBarry Smith       PetscCallP4estReturn(myCompEnd, p4est_quadrant_compare_piggy, (myCoarseStart, &globalFirstB[guess + 1]));
6680a96aa3bSJed Brown       if (startCompMy <= 0 && myCompEnd < 0) {
6690a96aa3bSJed Brown         *startB = guess;
6700a96aa3bSJed Brown         break;
6710a96aa3bSJed Brown       } else if (startCompMy > 0) { /* guess is to high */
6720a96aa3bSJed Brown         hi = guess;
6730a96aa3bSJed Brown       } else { /* guess is to low */
6740a96aa3bSJed Brown         lo = guess + 1;
6750a96aa3bSJed Brown       }
6760a96aa3bSJed Brown       guess = lo + (hi - lo) / 2;
6770a96aa3bSJed Brown     }
6780a96aa3bSJed Brown     /* reset bounds, but not guess */
6790a96aa3bSJed Brown     lo = 0;
6800a96aa3bSJed Brown     hi = size;
6810a96aa3bSJed Brown     while (1) {
6820a96aa3bSJed Brown       int startCompMy, myCompEnd;
6830a96aa3bSJed Brown 
684792fecdfSBarry Smith       PetscCallP4estReturn(startCompMy, p4est_quadrant_compare_piggy, (&globalFirstB[guess], myCoarseEnd));
685792fecdfSBarry Smith       PetscCallP4estReturn(myCompEnd, p4est_quadrant_compare_piggy, (myCoarseEnd, &globalFirstB[guess + 1]));
6860a96aa3bSJed Brown       if (startCompMy < 0 && myCompEnd <= 0) { /* notice that the comparison operators are different from above */
6870a96aa3bSJed Brown         *endB = guess + 1;
6880a96aa3bSJed Brown         break;
6890a96aa3bSJed Brown       } else if (startCompMy >= 0) { /* guess is to high */
6900a96aa3bSJed Brown         hi = guess;
6910a96aa3bSJed Brown       } else { /* guess is to low */
6920a96aa3bSJed Brown         lo = guess + 1;
6930a96aa3bSJed Brown       }
6940a96aa3bSJed Brown       guess = lo + (hi - lo) / 2;
6950a96aa3bSJed Brown     }
6960a96aa3bSJed Brown   }
6973ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6980a96aa3bSJed Brown }
6990a96aa3bSJed Brown 
7000a96aa3bSJed Brown static PetscErrorCode DMPforestGetPlex(DM, DM *);
7010a96aa3bSJed Brown 
7020a96aa3bSJed Brown   #define DMSetUp_pforest _append_pforest(DMSetUp)
DMSetUp_pforest(DM dm)703d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMSetUp_pforest(DM dm)
704d71ae5a4SJacob Faibussowitsch {
7050a96aa3bSJed Brown   DM_Forest         *forest  = (DM_Forest *)dm->data;
7060a96aa3bSJed Brown   DM_Forest_pforest *pforest = (DM_Forest_pforest *)forest->data;
7070a96aa3bSJed Brown   DM                 base, adaptFrom;
7080a96aa3bSJed Brown   DMForestTopology   topoName;
7090a96aa3bSJed Brown   PetscSF            preCoarseToFine = NULL, coarseToPreFine = NULL;
7100a96aa3bSJed Brown   PforestAdaptCtx    ctx;
7110a96aa3bSJed Brown 
7120a96aa3bSJed Brown   PetscFunctionBegin;
7131690c2aeSBarry Smith   ctx.minLevel  = PETSC_INT_MAX;
7140a96aa3bSJed Brown   ctx.maxLevel  = 0;
7150a96aa3bSJed Brown   ctx.currLevel = 0;
7160a96aa3bSJed Brown   ctx.anyChange = PETSC_FALSE;
7170a96aa3bSJed Brown   /* sanity check */
7189566063dSJacob Faibussowitsch   PetscCall(DMForestGetAdaptivityForest(dm, &adaptFrom));
7199566063dSJacob Faibussowitsch   PetscCall(DMForestGetBaseDM(dm, &base));
7209566063dSJacob Faibussowitsch   PetscCall(DMForestGetTopology(dm, &topoName));
7211dca8a05SBarry Smith   PetscCheck(adaptFrom || base || topoName, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONGSTATE, "A forest needs a topology, a base DM, or a DM to adapt from");
7220a96aa3bSJed Brown 
7230a96aa3bSJed Brown   /* === Step 1: DMFTopology === */
7240a96aa3bSJed Brown   if (adaptFrom) { /* reference already created topology */
7250a96aa3bSJed Brown     PetscBool          ispforest;
7260a96aa3bSJed Brown     DM_Forest         *aforest  = (DM_Forest *)adaptFrom->data;
7270a96aa3bSJed Brown     DM_Forest_pforest *apforest = (DM_Forest_pforest *)aforest->data;
7280a96aa3bSJed Brown 
7299566063dSJacob Faibussowitsch     PetscCall(PetscObjectTypeCompare((PetscObject)adaptFrom, DMPFOREST, &ispforest));
73028b400f6SJacob Faibussowitsch     PetscCheck(ispforest, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_NOTSAMETYPE, "Trying to adapt from %s, which is not %s", ((PetscObject)adaptFrom)->type_name, DMPFOREST);
73128b400f6SJacob Faibussowitsch     PetscCheck(apforest->topo, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONGSTATE, "The pre-adaptation forest must have a topology");
7329566063dSJacob Faibussowitsch     PetscCall(DMSetUp(adaptFrom));
7339566063dSJacob Faibussowitsch     PetscCall(DMForestGetBaseDM(dm, &base));
7349566063dSJacob Faibussowitsch     PetscCall(DMForestGetTopology(dm, &topoName));
7350a96aa3bSJed Brown   } else if (base) { /* construct a connectivity from base */
7360a96aa3bSJed Brown     PetscBool isPlex, isDA;
7370a96aa3bSJed Brown 
7389566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetName((PetscObject)base, &topoName));
7399566063dSJacob Faibussowitsch     PetscCall(DMForestSetTopology(dm, topoName));
7409566063dSJacob Faibussowitsch     PetscCall(PetscObjectTypeCompare((PetscObject)base, DMPLEX, &isPlex));
7419566063dSJacob Faibussowitsch     PetscCall(PetscObjectTypeCompare((PetscObject)base, DMDA, &isDA));
7420a96aa3bSJed Brown     if (isPlex) {
7430a96aa3bSJed Brown       MPI_Comm              comm = PetscObjectComm((PetscObject)dm);
7440a96aa3bSJed Brown       PetscInt              depth;
7450a96aa3bSJed Brown       PetscMPIInt           size;
7460a96aa3bSJed Brown       p4est_connectivity_t *conn = NULL;
7470a96aa3bSJed Brown       DMFTopology_pforest  *topo;
7480a96aa3bSJed Brown       PetscInt             *tree_face_to_uniq = NULL;
7490a96aa3bSJed Brown 
7509566063dSJacob Faibussowitsch       PetscCall(DMPlexGetDepth(base, &depth));
7510a96aa3bSJed Brown       if (depth == 1) {
7520a96aa3bSJed Brown         DM connDM;
7530a96aa3bSJed Brown 
7549566063dSJacob Faibussowitsch         PetscCall(DMPlexInterpolate(base, &connDM));
7550a96aa3bSJed Brown         base = connDM;
7569566063dSJacob Faibussowitsch         PetscCall(DMForestSetBaseDM(dm, base));
7579566063dSJacob Faibussowitsch         PetscCall(DMDestroy(&connDM));
75863a3b9bcSJacob Faibussowitsch       } else PetscCheck(depth == P4EST_DIM, comm, PETSC_ERR_ARG_WRONG, "Base plex is neither interpolated nor uninterpolated? depth %" PetscInt_FMT ", expected 2 or %d", depth, P4EST_DIM + 1);
7599566063dSJacob Faibussowitsch       PetscCallMPI(MPI_Comm_size(comm, &size));
7600a96aa3bSJed Brown       if (size > 1) {
7610a96aa3bSJed Brown         DM      dmRedundant;
7620a96aa3bSJed Brown         PetscSF sf;
7630a96aa3bSJed Brown 
7649566063dSJacob Faibussowitsch         PetscCall(DMPlexGetRedundantDM(base, &sf, &dmRedundant));
76528b400f6SJacob Faibussowitsch         PetscCheck(dmRedundant, comm, PETSC_ERR_PLIB, "Could not create redundant DM");
7669566063dSJacob Faibussowitsch         PetscCall(PetscObjectCompose((PetscObject)dmRedundant, "_base_migration_sf", (PetscObject)sf));
7679566063dSJacob Faibussowitsch         PetscCall(PetscSFDestroy(&sf));
7680a96aa3bSJed Brown         base = dmRedundant;
7699566063dSJacob Faibussowitsch         PetscCall(DMForestSetBaseDM(dm, base));
7709566063dSJacob Faibussowitsch         PetscCall(DMDestroy(&dmRedundant));
7710a96aa3bSJed Brown       }
7729566063dSJacob Faibussowitsch       PetscCall(DMViewFromOptions(base, NULL, "-dm_p4est_base_view"));
7739566063dSJacob Faibussowitsch       PetscCall(DMPlexCreateConnectivity_pforest(base, &conn, &tree_face_to_uniq));
7744dfa11a4SJacob Faibussowitsch       PetscCall(PetscNew(&topo));
7750a96aa3bSJed Brown       topo->refct = 1;
7760a96aa3bSJed Brown       topo->conn  = conn;
7770a96aa3bSJed Brown       topo->geom  = NULL;
7780a96aa3bSJed Brown       {
7790a96aa3bSJed Brown         PetscErrorCode (*map)(DM, PetscInt, PetscInt, const PetscReal[], PetscReal[], void *);
7800a96aa3bSJed Brown         void *mapCtx;
7810a96aa3bSJed Brown 
7829566063dSJacob Faibussowitsch         PetscCall(DMForestGetBaseCoordinateMapping(dm, &map, &mapCtx));
7830a96aa3bSJed Brown         if (map) {
7840a96aa3bSJed Brown           DM_Forest_geometry_pforest *geom_pforest;
7850a96aa3bSJed Brown           p4est_geometry_t           *geom;
7860a96aa3bSJed Brown 
7879566063dSJacob Faibussowitsch           PetscCall(PetscNew(&geom_pforest));
7889566063dSJacob Faibussowitsch           PetscCall(DMGetCoordinateDim(dm, &geom_pforest->coordDim));
7890a96aa3bSJed Brown           geom_pforest->map    = map;
7900a96aa3bSJed Brown           geom_pforest->mapCtx = mapCtx;
791792fecdfSBarry Smith           PetscCallP4estReturn(geom_pforest->inner, p4est_geometry_new_connectivity, (conn));
7929566063dSJacob Faibussowitsch           PetscCall(PetscNew(&geom));
7930a96aa3bSJed Brown           geom->name    = topoName;
7940a96aa3bSJed Brown           geom->user    = geom_pforest;
7950a96aa3bSJed Brown           geom->X       = GeometryMapping_pforest;
7960a96aa3bSJed Brown           geom->destroy = GeometryDestroy_pforest;
7970a96aa3bSJed Brown           topo->geom    = geom;
7980a96aa3bSJed Brown         }
7990a96aa3bSJed Brown       }
8000a96aa3bSJed Brown       topo->tree_face_to_uniq = tree_face_to_uniq;
8010a96aa3bSJed Brown       pforest->topo           = topo;
80228b400f6SJacob Faibussowitsch     } else PetscCheck(!isDA, PetscObjectComm((PetscObject)dm), PETSC_ERR_PLIB, "Not implemented yet");
8030a96aa3bSJed Brown   #if 0
8040a96aa3bSJed Brown       PetscInt N[3], P[3];
8050a96aa3bSJed Brown 
8060a96aa3bSJed Brown       /* get the sizes, periodicities */
8070a96aa3bSJed Brown       /* ... */
8080a96aa3bSJed Brown                                                                   /* don't use Morton order */
8099566063dSJacob Faibussowitsch       PetscCall(DMFTopologyCreateBrick_pforest(dm,N,P,&pforest->topo,PETSC_FALSE));
8100a96aa3bSJed Brown   #endif
8110a96aa3bSJed Brown     {
8120a96aa3bSJed Brown       PetscInt numLabels, l;
8130a96aa3bSJed Brown 
8149566063dSJacob Faibussowitsch       PetscCall(DMGetNumLabels(base, &numLabels));
8150a96aa3bSJed Brown       for (l = 0; l < numLabels; l++) {
8160a96aa3bSJed Brown         PetscBool   isDepth, isGhost, isVTK, isDim, isCellType;
8170a96aa3bSJed Brown         DMLabel     label, labelNew;
8180a96aa3bSJed Brown         PetscInt    defVal;
8190a96aa3bSJed Brown         const char *name;
8200a96aa3bSJed Brown 
8219566063dSJacob Faibussowitsch         PetscCall(DMGetLabelName(base, l, &name));
8229566063dSJacob Faibussowitsch         PetscCall(DMGetLabelByNum(base, l, &label));
8239566063dSJacob Faibussowitsch         PetscCall(PetscStrcmp(name, "depth", &isDepth));
8240a96aa3bSJed Brown         if (isDepth) continue;
8259566063dSJacob Faibussowitsch         PetscCall(PetscStrcmp(name, "dim", &isDim));
8260a96aa3bSJed Brown         if (isDim) continue;
8279566063dSJacob Faibussowitsch         PetscCall(PetscStrcmp(name, "celltype", &isCellType));
8280a96aa3bSJed Brown         if (isCellType) continue;
8299566063dSJacob Faibussowitsch         PetscCall(PetscStrcmp(name, "ghost", &isGhost));
8300a96aa3bSJed Brown         if (isGhost) continue;
8319566063dSJacob Faibussowitsch         PetscCall(PetscStrcmp(name, "vtk", &isVTK));
8320a96aa3bSJed Brown         if (isVTK) continue;
8339566063dSJacob Faibussowitsch         PetscCall(DMCreateLabel(dm, name));
8349566063dSJacob Faibussowitsch         PetscCall(DMGetLabel(dm, name, &labelNew));
8359566063dSJacob Faibussowitsch         PetscCall(DMLabelGetDefaultValue(label, &defVal));
8369566063dSJacob Faibussowitsch         PetscCall(DMLabelSetDefaultValue(labelNew, defVal));
8370a96aa3bSJed Brown       }
8380a96aa3bSJed Brown       /* map dm points (internal plex) to base
8390a96aa3bSJed Brown          we currently create the subpoint_map for the entire hierarchy, starting from the finest forest
8400a96aa3bSJed Brown          and propagating back to the coarsest
8410a96aa3bSJed Brown          This is not an optimal approach, since we need the map only on the coarsest level
8420a96aa3bSJed Brown          during DMForestTransferVecFromBase */
8439566063dSJacob Faibussowitsch       PetscCall(DMForestGetMinimumRefinement(dm, &l));
84448a46eb9SPierre Jolivet       if (!l) PetscCall(DMCreateLabel(dm, "_forest_base_subpoint_map"));
8450a96aa3bSJed Brown     }
8460a96aa3bSJed Brown   } else { /* construct from topology name */
8470a96aa3bSJed Brown     DMFTopology_pforest *topo;
8480a96aa3bSJed Brown 
8499566063dSJacob Faibussowitsch     PetscCall(DMFTopologyCreate_pforest(dm, topoName, &topo));
8500a96aa3bSJed Brown     pforest->topo = topo;
8510a96aa3bSJed Brown     /* TODO: construct base? */
8520a96aa3bSJed Brown   }
8530a96aa3bSJed Brown 
8540a96aa3bSJed Brown   /* === Step 2: get the leaves of the forest === */
8550a96aa3bSJed Brown   if (adaptFrom) { /* start with the old forest */
8560a96aa3bSJed Brown     DMLabel            adaptLabel;
8570a96aa3bSJed Brown     PetscInt           defaultValue;
8580a96aa3bSJed Brown     PetscInt           numValues, numValuesGlobal, cLocalStart, count;
8590a96aa3bSJed Brown     DM_Forest         *aforest  = (DM_Forest *)adaptFrom->data;
8600a96aa3bSJed Brown     DM_Forest_pforest *apforest = (DM_Forest_pforest *)aforest->data;
8610a96aa3bSJed Brown     PetscBool          computeAdaptSF;
8620a96aa3bSJed Brown     p4est_topidx_t     flt, llt, t;
8630a96aa3bSJed Brown 
8640a96aa3bSJed Brown     flt         = apforest->forest->first_local_tree;
8650a96aa3bSJed Brown     llt         = apforest->forest->last_local_tree;
8660a96aa3bSJed Brown     cLocalStart = apforest->cLocalStart;
8679566063dSJacob Faibussowitsch     PetscCall(DMForestGetComputeAdaptivitySF(dm, &computeAdaptSF));
868792fecdfSBarry Smith     PetscCallP4estReturn(pforest->forest, p4est_copy, (apforest->forest, 0)); /* 0 indicates no data copying */
8699566063dSJacob Faibussowitsch     PetscCall(DMForestGetAdaptivityLabel(dm, &adaptLabel));
8700a96aa3bSJed Brown     if (adaptLabel) {
8710a96aa3bSJed Brown       /* apply the refinement/coarsening by flags, plus minimum/maximum refinement */
8729566063dSJacob Faibussowitsch       PetscCall(DMLabelGetNumValues(adaptLabel, &numValues));
873462c564dSBarry Smith       PetscCallMPI(MPIU_Allreduce(&numValues, &numValuesGlobal, 1, MPIU_INT, MPI_MAX, PetscObjectComm((PetscObject)adaptFrom)));
8749566063dSJacob Faibussowitsch       PetscCall(DMLabelGetDefaultValue(adaptLabel, &defaultValue));
8750a96aa3bSJed Brown       if (!numValuesGlobal && defaultValue == DM_ADAPT_COARSEN_LAST) { /* uniform coarsen of the last level only (equivalent to DM_ADAPT_COARSEN for conforming grids)  */
8769566063dSJacob Faibussowitsch         PetscCall(DMForestGetMinimumRefinement(dm, &ctx.minLevel));
8779566063dSJacob Faibussowitsch         PetscCall(DMPforestGetRefinementLevel(dm, &ctx.currLevel));
8780a96aa3bSJed Brown         pforest->forest->user_pointer = (void *)&ctx;
879792fecdfSBarry Smith         PetscCallP4est(p4est_coarsen, (pforest->forest, 0, pforest_coarsen_currlevel, NULL));
8800a96aa3bSJed Brown         pforest->forest->user_pointer = (void *)dm;
881792fecdfSBarry Smith         PetscCallP4est(p4est_balance, (pforest->forest, P4EST_CONNECT_FULL, NULL));
8820a96aa3bSJed Brown         /* we will have to change the offset after we compute the overlap */
88348a46eb9SPierre Jolivet         if (computeAdaptSF) PetscCall(DMPforestComputeLocalCellTransferSF(PetscObjectComm((PetscObject)dm), pforest->forest, 0, apforest->forest, apforest->cLocalStart, &coarseToPreFine, NULL));
8840a96aa3bSJed Brown       } else if (!numValuesGlobal && defaultValue == DM_ADAPT_COARSEN) { /* uniform coarsen */
8859566063dSJacob Faibussowitsch         PetscCall(DMForestGetMinimumRefinement(dm, &ctx.minLevel));
8860a96aa3bSJed Brown         pforest->forest->user_pointer = (void *)&ctx;
887792fecdfSBarry Smith         PetscCallP4est(p4est_coarsen, (pforest->forest, 0, pforest_coarsen_uniform, NULL));
8880a96aa3bSJed Brown         pforest->forest->user_pointer = (void *)dm;
889792fecdfSBarry Smith         PetscCallP4est(p4est_balance, (pforest->forest, P4EST_CONNECT_FULL, NULL));
8900a96aa3bSJed Brown         /* we will have to change the offset after we compute the overlap */
89148a46eb9SPierre Jolivet         if (computeAdaptSF) PetscCall(DMPforestComputeLocalCellTransferSF(PetscObjectComm((PetscObject)dm), pforest->forest, 0, apforest->forest, apforest->cLocalStart, &coarseToPreFine, NULL));
8920a96aa3bSJed Brown       } else if (!numValuesGlobal && defaultValue == DM_ADAPT_REFINE) { /* uniform refine */
8939566063dSJacob Faibussowitsch         PetscCall(DMForestGetMaximumRefinement(dm, &ctx.maxLevel));
8940a96aa3bSJed Brown         pforest->forest->user_pointer = (void *)&ctx;
895792fecdfSBarry Smith         PetscCallP4est(p4est_refine, (pforest->forest, 0, pforest_refine_uniform, NULL));
8960a96aa3bSJed Brown         pforest->forest->user_pointer = (void *)dm;
897792fecdfSBarry Smith         PetscCallP4est(p4est_balance, (pforest->forest, P4EST_CONNECT_FULL, NULL));
8980a96aa3bSJed Brown         /* we will have to change the offset after we compute the overlap */
89948a46eb9SPierre Jolivet         if (computeAdaptSF) PetscCall(DMPforestComputeLocalCellTransferSF(PetscObjectComm((PetscObject)dm), apforest->forest, apforest->cLocalStart, pforest->forest, 0, &preCoarseToFine, NULL));
9000a96aa3bSJed Brown       } else if (numValuesGlobal) {
9010a96aa3bSJed Brown         p4est_t                   *p4est = pforest->forest;
9020a96aa3bSJed Brown         PetscInt                  *cellFlags;
9030a96aa3bSJed Brown         DMForestAdaptivityStrategy strategy;
9040a96aa3bSJed Brown         PetscSF                    cellSF;
9050a96aa3bSJed Brown         PetscInt                   c, cStart, cEnd;
9060a96aa3bSJed Brown         PetscBool                  adaptAny;
9070a96aa3bSJed Brown 
9089566063dSJacob Faibussowitsch         PetscCall(DMForestGetMaximumRefinement(dm, &ctx.maxLevel));
9099566063dSJacob Faibussowitsch         PetscCall(DMForestGetMinimumRefinement(dm, &ctx.minLevel));
9109566063dSJacob Faibussowitsch         PetscCall(DMForestGetAdaptivityStrategy(dm, &strategy));
9119566063dSJacob Faibussowitsch         PetscCall(PetscStrncmp(strategy, "any", 3, &adaptAny));
9129566063dSJacob Faibussowitsch         PetscCall(DMForestGetCellChart(adaptFrom, &cStart, &cEnd));
9139566063dSJacob Faibussowitsch         PetscCall(DMForestGetCellSF(adaptFrom, &cellSF));
9149566063dSJacob Faibussowitsch         PetscCall(PetscMalloc1(cEnd - cStart, &cellFlags));
9159566063dSJacob Faibussowitsch         for (c = cStart; c < cEnd; c++) PetscCall(DMLabelGetValue(adaptLabel, c, &cellFlags[c - cStart]));
9160a96aa3bSJed Brown         if (cellSF) {
9170a96aa3bSJed Brown           if (adaptAny) {
9189566063dSJacob Faibussowitsch             PetscCall(PetscSFReduceBegin(cellSF, MPIU_INT, cellFlags, cellFlags, MPI_MAX));
9199566063dSJacob Faibussowitsch             PetscCall(PetscSFReduceEnd(cellSF, MPIU_INT, cellFlags, cellFlags, MPI_MAX));
9200a96aa3bSJed Brown           } else {
9219566063dSJacob Faibussowitsch             PetscCall(PetscSFReduceBegin(cellSF, MPIU_INT, cellFlags, cellFlags, MPI_MIN));
9229566063dSJacob Faibussowitsch             PetscCall(PetscSFReduceEnd(cellSF, MPIU_INT, cellFlags, cellFlags, MPI_MIN));
9230a96aa3bSJed Brown           }
9240a96aa3bSJed Brown         }
9250a96aa3bSJed Brown         for (t = flt, count = cLocalStart; t <= llt; t++) {
9260a96aa3bSJed Brown           p4est_tree_t     *tree     = &(((p4est_tree_t *)p4est->trees->array)[t]);
9270a96aa3bSJed Brown           PetscInt          numQuads = (PetscInt)tree->quadrants.elem_count, i;
9280a96aa3bSJed Brown           p4est_quadrant_t *quads    = (p4est_quadrant_t *)tree->quadrants.array;
9290a96aa3bSJed Brown 
9300a96aa3bSJed Brown           for (i = 0; i < numQuads; i++) {
9310a96aa3bSJed Brown             p4est_quadrant_t *q = &quads[i];
9320a96aa3bSJed Brown             q->p.user_int       = cellFlags[count++];
9330a96aa3bSJed Brown           }
9340a96aa3bSJed Brown         }
9359566063dSJacob Faibussowitsch         PetscCall(PetscFree(cellFlags));
9360a96aa3bSJed Brown 
9370a96aa3bSJed Brown         pforest->forest->user_pointer = (void *)&ctx;
938792fecdfSBarry Smith         if (adaptAny) PetscCallP4est(p4est_coarsen, (pforest->forest, 0, pforest_coarsen_flag_any, pforest_init_determine));
939792fecdfSBarry Smith         else PetscCallP4est(p4est_coarsen, (pforest->forest, 0, pforest_coarsen_flag_all, pforest_init_determine));
940792fecdfSBarry Smith         PetscCallP4est(p4est_refine, (pforest->forest, 0, pforest_refine_flag, NULL));
9410a96aa3bSJed Brown         pforest->forest->user_pointer = (void *)dm;
942792fecdfSBarry Smith         PetscCallP4est(p4est_balance, (pforest->forest, P4EST_CONNECT_FULL, NULL));
94348a46eb9SPierre Jolivet         if (computeAdaptSF) PetscCall(DMPforestComputeLocalCellTransferSF(PetscObjectComm((PetscObject)dm), apforest->forest, apforest->cLocalStart, pforest->forest, 0, &preCoarseToFine, &coarseToPreFine));
9440a96aa3bSJed Brown       }
9450a96aa3bSJed Brown       for (t = flt, count = cLocalStart; t <= llt; t++) {
9460a96aa3bSJed Brown         p4est_tree_t     *atree     = &(((p4est_tree_t *)apforest->forest->trees->array)[t]);
9470a96aa3bSJed Brown         p4est_tree_t     *tree      = &(((p4est_tree_t *)pforest->forest->trees->array)[t]);
9480a96aa3bSJed Brown         PetscInt          anumQuads = (PetscInt)atree->quadrants.elem_count, i;
9490a96aa3bSJed Brown         PetscInt          numQuads  = (PetscInt)tree->quadrants.elem_count;
9500a96aa3bSJed Brown         p4est_quadrant_t *aquads    = (p4est_quadrant_t *)atree->quadrants.array;
9510a96aa3bSJed Brown         p4est_quadrant_t *quads     = (p4est_quadrant_t *)tree->quadrants.array;
9520a96aa3bSJed Brown 
9530a96aa3bSJed Brown         if (anumQuads != numQuads) {
9540a96aa3bSJed Brown           ctx.anyChange = PETSC_TRUE;
9550a96aa3bSJed Brown         } else {
9560a96aa3bSJed Brown           for (i = 0; i < numQuads; i++) {
9570a96aa3bSJed Brown             p4est_quadrant_t *aq = &aquads[i];
9580a96aa3bSJed Brown             p4est_quadrant_t *q  = &quads[i];
9590a96aa3bSJed Brown 
9600a96aa3bSJed Brown             if (aq->level != q->level) {
9610a96aa3bSJed Brown               ctx.anyChange = PETSC_TRUE;
9620a96aa3bSJed Brown               break;
9630a96aa3bSJed Brown             }
9640a96aa3bSJed Brown           }
9650a96aa3bSJed Brown         }
966ad540459SPierre Jolivet         if (ctx.anyChange) break;
9670a96aa3bSJed Brown       }
9680a96aa3bSJed Brown     }
9690a96aa3bSJed Brown     {
9700a96aa3bSJed Brown       PetscInt numLabels, l;
9710a96aa3bSJed Brown 
9729566063dSJacob Faibussowitsch       PetscCall(DMGetNumLabels(adaptFrom, &numLabels));
9730a96aa3bSJed Brown       for (l = 0; l < numLabels; l++) {
9740a96aa3bSJed Brown         PetscBool   isDepth, isCellType, isGhost, isVTK;
9750a96aa3bSJed Brown         DMLabel     label, labelNew;
9760a96aa3bSJed Brown         PetscInt    defVal;
9770a96aa3bSJed Brown         const char *name;
9780a96aa3bSJed Brown 
9799566063dSJacob Faibussowitsch         PetscCall(DMGetLabelName(adaptFrom, l, &name));
9809566063dSJacob Faibussowitsch         PetscCall(DMGetLabelByNum(adaptFrom, l, &label));
9819566063dSJacob Faibussowitsch         PetscCall(PetscStrcmp(name, "depth", &isDepth));
9820a96aa3bSJed Brown         if (isDepth) continue;
9839566063dSJacob Faibussowitsch         PetscCall(PetscStrcmp(name, "celltype", &isCellType));
9840a96aa3bSJed Brown         if (isCellType) continue;
9859566063dSJacob Faibussowitsch         PetscCall(PetscStrcmp(name, "ghost", &isGhost));
9860a96aa3bSJed Brown         if (isGhost) continue;
9879566063dSJacob Faibussowitsch         PetscCall(PetscStrcmp(name, "vtk", &isVTK));
9880a96aa3bSJed Brown         if (isVTK) continue;
9899566063dSJacob Faibussowitsch         PetscCall(DMCreateLabel(dm, name));
9909566063dSJacob Faibussowitsch         PetscCall(DMGetLabel(dm, name, &labelNew));
9919566063dSJacob Faibussowitsch         PetscCall(DMLabelGetDefaultValue(label, &defVal));
9929566063dSJacob Faibussowitsch         PetscCall(DMLabelSetDefaultValue(labelNew, defVal));
9930a96aa3bSJed Brown       }
9940a96aa3bSJed Brown     }
9950a96aa3bSJed Brown   } else { /* initial */
9960a96aa3bSJed Brown     PetscInt initLevel, minLevel;
99766c0a4b5SToby Isaac   #if defined(PETSC_HAVE_MPIUNI)
99866c0a4b5SToby Isaac     sc_MPI_Comm comm = sc_MPI_COMM_WORLD;
99966c0a4b5SToby Isaac   #else
100066c0a4b5SToby Isaac     MPI_Comm comm = PetscObjectComm((PetscObject)dm);
100166c0a4b5SToby Isaac   #endif
10020a96aa3bSJed Brown 
10039566063dSJacob Faibussowitsch     PetscCall(DMForestGetInitialRefinement(dm, &initLevel));
10049566063dSJacob Faibussowitsch     PetscCall(DMForestGetMinimumRefinement(dm, &minLevel));
10059371c9d4SSatish Balay     PetscCallP4estReturn(pforest->forest, p4est_new_ext,
10069371c9d4SSatish Balay                          (comm, pforest->topo->conn, 0, /* minimum number of quadrants per processor */
10070a96aa3bSJed Brown                           initLevel,                    /* level of refinement */
10080a96aa3bSJed Brown                           1,                            /* uniform refinement */
10090a96aa3bSJed Brown                           0,                            /* we don't allocate any per quadrant data */
10100a96aa3bSJed Brown                           NULL,                         /* there is no special quadrant initialization */
10110a96aa3bSJed Brown                           (void *)dm));                 /* this dm is the user context */
10120a96aa3bSJed Brown 
10130a96aa3bSJed Brown     if (initLevel > minLevel) pforest->coarsen_hierarchy = PETSC_TRUE;
10140a96aa3bSJed Brown     if (dm->setfromoptionscalled) {
10150a96aa3bSJed Brown       PetscBool   flgPattern, flgFractal;
10160a96aa3bSJed Brown       PetscInt    corner = 0;
10170a96aa3bSJed Brown       PetscInt    corners[P4EST_CHILDREN], ncorner = P4EST_CHILDREN;
10180a96aa3bSJed Brown       PetscReal   likelihood = 1. / P4EST_DIM;
10190a96aa3bSJed Brown       PetscInt    pattern;
10200a96aa3bSJed Brown       const char *prefix;
10210a96aa3bSJed Brown 
10229566063dSJacob Faibussowitsch       PetscCall(PetscObjectGetOptionsPrefix((PetscObject)dm, &prefix));
10239566063dSJacob Faibussowitsch       PetscCall(PetscOptionsGetEList(((PetscObject)dm)->options, prefix, "-dm_p4est_refine_pattern", DMRefinePatternName, PATTERN_COUNT, &pattern, &flgPattern));
10249566063dSJacob Faibussowitsch       PetscCall(PetscOptionsGetInt(((PetscObject)dm)->options, prefix, "-dm_p4est_refine_corner", &corner, NULL));
10259566063dSJacob Faibussowitsch       PetscCall(PetscOptionsGetIntArray(((PetscObject)dm)->options, prefix, "-dm_p4est_refine_fractal_corners", corners, &ncorner, &flgFractal));
10269566063dSJacob Faibussowitsch       PetscCall(PetscOptionsGetReal(((PetscObject)dm)->options, prefix, "-dm_p4est_refine_hash_likelihood", &likelihood, NULL));
10270a96aa3bSJed Brown 
10280a96aa3bSJed Brown       if (flgPattern) {
10290a96aa3bSJed Brown         DMRefinePatternCtx *ctx;
10300a96aa3bSJed Brown         PetscInt            maxLevel;
10310a96aa3bSJed Brown 
10329566063dSJacob Faibussowitsch         PetscCall(DMForestGetMaximumRefinement(dm, &maxLevel));
10334dfa11a4SJacob Faibussowitsch         PetscCall(PetscNew(&ctx));
10340a96aa3bSJed Brown         ctx->maxLevel = PetscMin(maxLevel, P4EST_QMAXLEVEL);
10350a96aa3bSJed Brown         if (initLevel + ctx->maxLevel > minLevel) pforest->coarsen_hierarchy = PETSC_TRUE;
10360a96aa3bSJed Brown         switch (pattern) {
10370a96aa3bSJed Brown         case PATTERN_HASH:
10380a96aa3bSJed Brown           ctx->refine_fn      = DMRefinePattern_Hash;
10390a96aa3bSJed Brown           ctx->hashLikelihood = likelihood;
10400a96aa3bSJed Brown           break;
10410a96aa3bSJed Brown         case PATTERN_CORNER:
10420a96aa3bSJed Brown           ctx->corner    = corner;
10430a96aa3bSJed Brown           ctx->refine_fn = DMRefinePattern_Corner;
10440a96aa3bSJed Brown           break;
1045d71ae5a4SJacob Faibussowitsch         case PATTERN_CENTER:
1046d71ae5a4SJacob Faibussowitsch           ctx->refine_fn = DMRefinePattern_Center;
1047d71ae5a4SJacob Faibussowitsch           break;
10480a96aa3bSJed Brown         case PATTERN_FRACTAL:
10490a96aa3bSJed Brown           if (flgFractal) {
10500a96aa3bSJed Brown             PetscInt i;
10510a96aa3bSJed Brown 
10520a96aa3bSJed Brown             for (i = 0; i < ncorner; i++) ctx->fractal[corners[i]] = PETSC_TRUE;
10530a96aa3bSJed Brown           } else {
10540a96aa3bSJed Brown   #if !defined(P4_TO_P8)
10550a96aa3bSJed Brown             ctx->fractal[0] = ctx->fractal[1] = ctx->fractal[2] = PETSC_TRUE;
10560a96aa3bSJed Brown   #else
10570a96aa3bSJed Brown             ctx->fractal[0] = ctx->fractal[3] = ctx->fractal[5] = ctx->fractal[6] = PETSC_TRUE;
10580a96aa3bSJed Brown   #endif
10590a96aa3bSJed Brown           }
10600a96aa3bSJed Brown           ctx->refine_fn = DMRefinePattern_Fractal;
10610a96aa3bSJed Brown           break;
1062d71ae5a4SJacob Faibussowitsch         default:
1063d71ae5a4SJacob Faibussowitsch           SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Not a valid refinement pattern");
10640a96aa3bSJed Brown         }
10650a96aa3bSJed Brown 
10660a96aa3bSJed Brown         pforest->forest->user_pointer = (void *)ctx;
1067792fecdfSBarry Smith         PetscCallP4est(p4est_refine, (pforest->forest, 1, ctx->refine_fn, NULL));
1068792fecdfSBarry Smith         PetscCallP4est(p4est_balance, (pforest->forest, P4EST_CONNECT_FULL, NULL));
10699566063dSJacob Faibussowitsch         PetscCall(PetscFree(ctx));
10700a96aa3bSJed Brown         pforest->forest->user_pointer = (void *)dm;
10710a96aa3bSJed Brown       }
10720a96aa3bSJed Brown     }
10730a96aa3bSJed Brown   }
10740a96aa3bSJed Brown   if (pforest->coarsen_hierarchy) {
10750a96aa3bSJed Brown     PetscInt initLevel, currLevel, minLevel;
10760a96aa3bSJed Brown 
10779566063dSJacob Faibussowitsch     PetscCall(DMPforestGetRefinementLevel(dm, &currLevel));
10789566063dSJacob Faibussowitsch     PetscCall(DMForestGetInitialRefinement(dm, &initLevel));
10799566063dSJacob Faibussowitsch     PetscCall(DMForestGetMinimumRefinement(dm, &minLevel));
1080156acca6SStefano Zampini     /* allow using PCMG and SNESFAS */
1081156acca6SStefano Zampini     PetscCall(DMSetRefineLevel(dm, currLevel - minLevel));
10820a96aa3bSJed Brown     if (currLevel > minLevel) {
10830a96aa3bSJed Brown       DM_Forest_pforest *coarse_pforest;
10840a96aa3bSJed Brown       DMLabel            coarsen;
10850a96aa3bSJed Brown       DM                 coarseDM;
10860a96aa3bSJed Brown 
10879566063dSJacob Faibussowitsch       PetscCall(DMForestTemplate(dm, MPI_COMM_NULL, &coarseDM));
10889566063dSJacob Faibussowitsch       PetscCall(DMForestSetAdaptivityPurpose(coarseDM, DM_ADAPT_COARSEN));
10899566063dSJacob Faibussowitsch       PetscCall(DMLabelCreate(PETSC_COMM_SELF, "coarsen", &coarsen));
10909566063dSJacob Faibussowitsch       PetscCall(DMLabelSetDefaultValue(coarsen, DM_ADAPT_COARSEN));
10919566063dSJacob Faibussowitsch       PetscCall(DMForestSetAdaptivityLabel(coarseDM, coarsen));
10929566063dSJacob Faibussowitsch       PetscCall(DMLabelDestroy(&coarsen));
10939566063dSJacob Faibussowitsch       PetscCall(DMSetCoarseDM(dm, coarseDM));
10949566063dSJacob Faibussowitsch       PetscCall(PetscObjectDereference((PetscObject)coarseDM));
10950a96aa3bSJed Brown       initLevel = currLevel == initLevel ? initLevel - 1 : initLevel;
10969566063dSJacob Faibussowitsch       PetscCall(DMForestSetInitialRefinement(coarseDM, initLevel));
10979566063dSJacob Faibussowitsch       PetscCall(DMForestSetMinimumRefinement(coarseDM, minLevel));
10980a96aa3bSJed Brown       coarse_pforest                    = (DM_Forest_pforest *)((DM_Forest *)coarseDM->data)->data;
10990a96aa3bSJed Brown       coarse_pforest->coarsen_hierarchy = PETSC_TRUE;
11000a96aa3bSJed Brown     }
11010a96aa3bSJed Brown   }
11020a96aa3bSJed Brown 
11030a96aa3bSJed Brown   { /* repartitioning and overlap */
11040a96aa3bSJed Brown     PetscMPIInt size, rank;
11050a96aa3bSJed Brown 
11069566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)dm), &size));
11079566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)dm), &rank));
1108217f96c1SStefano Zampini     if (size > 1 && (pforest->partition_for_coarsening || forest->cellWeights || forest->weightCapacity != 1. || forest->weightsFactor != 1.)) {
11090a96aa3bSJed Brown       PetscBool      copyForest  = PETSC_FALSE;
11100a96aa3bSJed Brown       p4est_t       *forest_copy = NULL;
11110a96aa3bSJed Brown       p4est_gloidx_t shipped     = 0;
11120a96aa3bSJed Brown 
11130a96aa3bSJed Brown       if (preCoarseToFine || coarseToPreFine) copyForest = PETSC_TRUE;
1114792fecdfSBarry Smith       if (copyForest) PetscCallP4estReturn(forest_copy, p4est_copy, (pforest->forest, 0));
11150a96aa3bSJed Brown 
1116966bd95aSPierre Jolivet       PetscCheck(!forest->cellWeights && forest->weightCapacity == 1. && forest->weightsFactor == 1., PetscObjectComm((PetscObject)dm), PETSC_ERR_PLIB, "Non-uniform partition cases not implemented yet");
1117792fecdfSBarry Smith       PetscCallP4estReturn(shipped, p4est_partition_ext, (pforest->forest, (int)pforest->partition_for_coarsening, NULL));
11180a96aa3bSJed Brown       if (shipped) ctx.anyChange = PETSC_TRUE;
11190a96aa3bSJed Brown       if (forest_copy) {
11200a96aa3bSJed Brown         if (preCoarseToFine || coarseToPreFine) {
11210a96aa3bSJed Brown           PetscSF        repartSF; /* repartSF has roots in the old partition */
11220a96aa3bSJed Brown           PetscInt       pStart = -1, pEnd = -1, p;
11230a96aa3bSJed Brown           PetscInt       numRoots, numLeaves;
11240a96aa3bSJed Brown           PetscSFNode   *repartRoots;
11250a96aa3bSJed Brown           p4est_gloidx_t postStart  = pforest->forest->global_first_quadrant[rank];
11260a96aa3bSJed Brown           p4est_gloidx_t postEnd    = pforest->forest->global_first_quadrant[rank + 1];
11270a96aa3bSJed Brown           p4est_gloidx_t partOffset = postStart;
11280a96aa3bSJed Brown 
11290a96aa3bSJed Brown           numRoots  = (PetscInt)(forest_copy->global_first_quadrant[rank + 1] - forest_copy->global_first_quadrant[rank]);
11300a96aa3bSJed Brown           numLeaves = (PetscInt)(postEnd - postStart);
11319566063dSJacob Faibussowitsch           PetscCall(DMPforestComputeOverlappingRanks(size, rank, pforest->forest, forest_copy, &pStart, &pEnd));
11329566063dSJacob Faibussowitsch           PetscCall(PetscMalloc1((PetscInt)pforest->forest->local_num_quadrants, &repartRoots));
11330a96aa3bSJed Brown           for (p = pStart; p < pEnd; p++) {
11340a96aa3bSJed Brown             p4est_gloidx_t preStart = forest_copy->global_first_quadrant[p];
11350a96aa3bSJed Brown             p4est_gloidx_t preEnd   = forest_copy->global_first_quadrant[p + 1];
11360a96aa3bSJed Brown 
11370a96aa3bSJed Brown             if (preEnd == preStart) continue;
113808401ef6SPierre Jolivet             PetscCheck(preStart <= postStart, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Bad partition overlap computation");
11390a96aa3bSJed Brown             preEnd = preEnd > postEnd ? postEnd : preEnd;
11406497c311SBarry Smith             for (p4est_gloidx_t q = partOffset; q < preEnd; q++) {
11410a96aa3bSJed Brown               repartRoots[q - postStart].rank  = p;
11426497c311SBarry Smith               repartRoots[q - postStart].index = (PetscInt)(partOffset - preStart);
11430a96aa3bSJed Brown             }
11440a96aa3bSJed Brown             partOffset = preEnd;
11450a96aa3bSJed Brown           }
11469566063dSJacob Faibussowitsch           PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)dm), &repartSF));
11479566063dSJacob Faibussowitsch           PetscCall(PetscSFSetGraph(repartSF, numRoots, numLeaves, NULL, PETSC_OWN_POINTER, repartRoots, PETSC_OWN_POINTER));
11489566063dSJacob Faibussowitsch           PetscCall(PetscSFSetUp(repartSF));
11490a96aa3bSJed Brown           if (preCoarseToFine) {
11500a96aa3bSJed Brown             PetscSF         repartSFembed, preCoarseToFineNew;
11510a96aa3bSJed Brown             PetscInt        nleaves;
11520a96aa3bSJed Brown             const PetscInt *leaves;
11530a96aa3bSJed Brown 
11549566063dSJacob Faibussowitsch             PetscCall(PetscSFSetUp(preCoarseToFine));
11559566063dSJacob Faibussowitsch             PetscCall(PetscSFGetGraph(preCoarseToFine, NULL, &nleaves, &leaves, NULL));
11560a96aa3bSJed Brown             if (leaves) {
11579566063dSJacob Faibussowitsch               PetscCall(PetscSFCreateEmbeddedRootSF(repartSF, nleaves, leaves, &repartSFembed));
11580a96aa3bSJed Brown             } else {
11590a96aa3bSJed Brown               repartSFembed = repartSF;
11609566063dSJacob Faibussowitsch               PetscCall(PetscObjectReference((PetscObject)repartSFembed));
11610a96aa3bSJed Brown             }
11629566063dSJacob Faibussowitsch             PetscCall(PetscSFCompose(preCoarseToFine, repartSFembed, &preCoarseToFineNew));
11639566063dSJacob Faibussowitsch             PetscCall(PetscSFDestroy(&preCoarseToFine));
11649566063dSJacob Faibussowitsch             PetscCall(PetscSFDestroy(&repartSFembed));
11650a96aa3bSJed Brown             preCoarseToFine = preCoarseToFineNew;
11660a96aa3bSJed Brown           }
11670a96aa3bSJed Brown           if (coarseToPreFine) {
11680a96aa3bSJed Brown             PetscSF repartSFinv, coarseToPreFineNew;
11690a96aa3bSJed Brown 
11709566063dSJacob Faibussowitsch             PetscCall(PetscSFCreateInverseSF(repartSF, &repartSFinv));
11719566063dSJacob Faibussowitsch             PetscCall(PetscSFCompose(repartSFinv, coarseToPreFine, &coarseToPreFineNew));
11729566063dSJacob Faibussowitsch             PetscCall(PetscSFDestroy(&coarseToPreFine));
11739566063dSJacob Faibussowitsch             PetscCall(PetscSFDestroy(&repartSFinv));
11740a96aa3bSJed Brown             coarseToPreFine = coarseToPreFineNew;
11750a96aa3bSJed Brown           }
11769566063dSJacob Faibussowitsch           PetscCall(PetscSFDestroy(&repartSF));
11770a96aa3bSJed Brown         }
1178792fecdfSBarry Smith         PetscCallP4est(p4est_destroy, (forest_copy));
11790a96aa3bSJed Brown       }
11800a96aa3bSJed Brown     }
11810a96aa3bSJed Brown     if (size > 1) {
11820a96aa3bSJed Brown       PetscInt overlap;
11830a96aa3bSJed Brown 
11849566063dSJacob Faibussowitsch       PetscCall(DMForestGetPartitionOverlap(dm, &overlap));
11850a96aa3bSJed Brown 
11860a96aa3bSJed Brown       if (adaptFrom) {
11870a96aa3bSJed Brown         PetscInt aoverlap;
11880a96aa3bSJed Brown 
11899566063dSJacob Faibussowitsch         PetscCall(DMForestGetPartitionOverlap(adaptFrom, &aoverlap));
1190ad540459SPierre Jolivet         if (aoverlap != overlap) ctx.anyChange = PETSC_TRUE;
11910a96aa3bSJed Brown       }
11920a96aa3bSJed Brown 
11930a96aa3bSJed Brown       if (overlap > 0) {
11940a96aa3bSJed Brown         PetscInt i, cLocalStart;
11950a96aa3bSJed Brown         PetscInt cEnd;
11960a96aa3bSJed Brown         PetscSF  preCellSF = NULL, cellSF = NULL;
11970a96aa3bSJed Brown 
1198792fecdfSBarry Smith         PetscCallP4estReturn(pforest->ghost, p4est_ghost_new, (pforest->forest, P4EST_CONNECT_FULL));
1199792fecdfSBarry Smith         PetscCallP4estReturn(pforest->lnodes, p4est_lnodes_new, (pforest->forest, pforest->ghost, -P4EST_DIM));
1200792fecdfSBarry Smith         PetscCallP4est(p4est_ghost_support_lnodes, (pforest->forest, pforest->lnodes, pforest->ghost));
1201792fecdfSBarry Smith         for (i = 1; i < overlap; i++) PetscCallP4est(p4est_ghost_expand_by_lnodes, (pforest->forest, pforest->lnodes, pforest->ghost));
12020a96aa3bSJed Brown 
12030a96aa3bSJed Brown         cLocalStart = pforest->cLocalStart = pforest->ghost->proc_offsets[rank];
12040a96aa3bSJed Brown         cEnd                               = pforest->forest->local_num_quadrants + pforest->ghost->proc_offsets[size];
12050a96aa3bSJed Brown 
12060a96aa3bSJed Brown         /* shift sfs by cLocalStart, expand by cell SFs */
12070a96aa3bSJed Brown         if (preCoarseToFine || coarseToPreFine) {
12089566063dSJacob Faibussowitsch           if (adaptFrom) PetscCall(DMForestGetCellSF(adaptFrom, &preCellSF));
12090a96aa3bSJed Brown           dm->setupcalled = PETSC_TRUE;
12109566063dSJacob Faibussowitsch           PetscCall(DMForestGetCellSF(dm, &cellSF));
12110a96aa3bSJed Brown         }
12120a96aa3bSJed Brown         if (preCoarseToFine) {
12130a96aa3bSJed Brown           PetscSF            preCoarseToFineNew;
12140a96aa3bSJed Brown           PetscInt           nleaves, nroots, *leavesNew, i, nleavesNew;
12150a96aa3bSJed Brown           const PetscInt    *leaves;
12160a96aa3bSJed Brown           const PetscSFNode *remotes;
12170a96aa3bSJed Brown           PetscSFNode       *remotesAll;
12180a96aa3bSJed Brown 
12199566063dSJacob Faibussowitsch           PetscCall(PetscSFSetUp(preCoarseToFine));
12209566063dSJacob Faibussowitsch           PetscCall(PetscSFGetGraph(preCoarseToFine, &nroots, &nleaves, &leaves, &remotes));
12219566063dSJacob Faibussowitsch           PetscCall(PetscMalloc1(cEnd, &remotesAll));
12220a96aa3bSJed Brown           for (i = 0; i < cEnd; i++) {
12230a96aa3bSJed Brown             remotesAll[i].rank  = -1;
12240a96aa3bSJed Brown             remotesAll[i].index = -1;
12250a96aa3bSJed Brown           }
12260a96aa3bSJed Brown           for (i = 0; i < nleaves; i++) remotesAll[(leaves ? leaves[i] : i) + cLocalStart] = remotes[i];
12279566063dSJacob Faibussowitsch           PetscCall(PetscSFSetUp(cellSF));
12286497c311SBarry Smith           PetscCall(PetscSFBcastBegin(cellSF, MPIU_SF_NODE, remotesAll, remotesAll, MPI_REPLACE));
12296497c311SBarry Smith           PetscCall(PetscSFBcastEnd(cellSF, MPIU_SF_NODE, remotesAll, remotesAll, MPI_REPLACE));
12300a96aa3bSJed Brown           nleavesNew = 0;
12310a96aa3bSJed Brown           for (i = 0; i < nleaves; i++) {
12320a96aa3bSJed Brown             if (remotesAll[i].rank >= 0) nleavesNew++;
12330a96aa3bSJed Brown           }
12349566063dSJacob Faibussowitsch           PetscCall(PetscMalloc1(nleavesNew, &leavesNew));
12350a96aa3bSJed Brown           nleavesNew = 0;
12360a96aa3bSJed Brown           for (i = 0; i < nleaves; i++) {
12370a96aa3bSJed Brown             if (remotesAll[i].rank >= 0) {
12380a96aa3bSJed Brown               leavesNew[nleavesNew] = i;
12390a96aa3bSJed Brown               if (i > nleavesNew) remotesAll[nleavesNew] = remotesAll[i];
12400a96aa3bSJed Brown               nleavesNew++;
12410a96aa3bSJed Brown             }
12420a96aa3bSJed Brown           }
12439566063dSJacob Faibussowitsch           PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)dm), &preCoarseToFineNew));
12440a96aa3bSJed Brown           if (nleavesNew < cEnd) {
12459566063dSJacob Faibussowitsch             PetscCall(PetscSFSetGraph(preCoarseToFineNew, nroots, nleavesNew, leavesNew, PETSC_OWN_POINTER, remotesAll, PETSC_COPY_VALUES));
12460a96aa3bSJed Brown           } else { /* all cells are leaves */
12479566063dSJacob Faibussowitsch             PetscCall(PetscFree(leavesNew));
12489566063dSJacob Faibussowitsch             PetscCall(PetscSFSetGraph(preCoarseToFineNew, nroots, nleavesNew, NULL, PETSC_OWN_POINTER, remotesAll, PETSC_COPY_VALUES));
12490a96aa3bSJed Brown           }
12509566063dSJacob Faibussowitsch           PetscCall(PetscFree(remotesAll));
12519566063dSJacob Faibussowitsch           PetscCall(PetscSFDestroy(&preCoarseToFine));
12520a96aa3bSJed Brown           preCoarseToFine = preCoarseToFineNew;
12530a96aa3bSJed Brown           preCoarseToFine = preCoarseToFineNew;
12540a96aa3bSJed Brown         }
12550a96aa3bSJed Brown         if (coarseToPreFine) {
12560a96aa3bSJed Brown           PetscSF            coarseToPreFineNew;
12570a96aa3bSJed Brown           PetscInt           nleaves, nroots, i, nleavesCellSF, nleavesExpanded, *leavesNew;
12580a96aa3bSJed Brown           const PetscInt    *leaves;
12590a96aa3bSJed Brown           const PetscSFNode *remotes;
12600a96aa3bSJed Brown           PetscSFNode       *remotesNew, *remotesNewRoot, *remotesExpanded;
12610a96aa3bSJed Brown 
12629566063dSJacob Faibussowitsch           PetscCall(PetscSFSetUp(coarseToPreFine));
12639566063dSJacob Faibussowitsch           PetscCall(PetscSFGetGraph(coarseToPreFine, &nroots, &nleaves, &leaves, &remotes));
12649566063dSJacob Faibussowitsch           PetscCall(PetscSFGetGraph(preCellSF, NULL, &nleavesCellSF, NULL, NULL));
12659566063dSJacob Faibussowitsch           PetscCall(PetscMalloc1(nroots, &remotesNewRoot));
12669566063dSJacob Faibussowitsch           PetscCall(PetscMalloc1(nleaves, &remotesNew));
12670a96aa3bSJed Brown           for (i = 0; i < nroots; i++) {
12680a96aa3bSJed Brown             remotesNewRoot[i].rank  = rank;
12690a96aa3bSJed Brown             remotesNewRoot[i].index = i + cLocalStart;
12700a96aa3bSJed Brown           }
12716497c311SBarry Smith           PetscCall(PetscSFBcastBegin(coarseToPreFine, MPIU_SF_NODE, remotesNewRoot, remotesNew, MPI_REPLACE));
12726497c311SBarry Smith           PetscCall(PetscSFBcastEnd(coarseToPreFine, MPIU_SF_NODE, remotesNewRoot, remotesNew, MPI_REPLACE));
12739566063dSJacob Faibussowitsch           PetscCall(PetscFree(remotesNewRoot));
12749566063dSJacob Faibussowitsch           PetscCall(PetscMalloc1(nleavesCellSF, &remotesExpanded));
12750a96aa3bSJed Brown           for (i = 0; i < nleavesCellSF; i++) {
12760a96aa3bSJed Brown             remotesExpanded[i].rank  = -1;
12770a96aa3bSJed Brown             remotesExpanded[i].index = -1;
12780a96aa3bSJed Brown           }
12790a96aa3bSJed Brown           for (i = 0; i < nleaves; i++) remotesExpanded[leaves ? leaves[i] : i] = remotesNew[i];
12809566063dSJacob Faibussowitsch           PetscCall(PetscFree(remotesNew));
12816497c311SBarry Smith           PetscCall(PetscSFBcastBegin(preCellSF, MPIU_SF_NODE, remotesExpanded, remotesExpanded, MPI_REPLACE));
12826497c311SBarry Smith           PetscCall(PetscSFBcastEnd(preCellSF, MPIU_SF_NODE, remotesExpanded, remotesExpanded, MPI_REPLACE));
12830a96aa3bSJed Brown 
12840a96aa3bSJed Brown           nleavesExpanded = 0;
12850a96aa3bSJed Brown           for (i = 0; i < nleavesCellSF; i++) {
12860a96aa3bSJed Brown             if (remotesExpanded[i].rank >= 0) nleavesExpanded++;
12870a96aa3bSJed Brown           }
12889566063dSJacob Faibussowitsch           PetscCall(PetscMalloc1(nleavesExpanded, &leavesNew));
12890a96aa3bSJed Brown           nleavesExpanded = 0;
12900a96aa3bSJed Brown           for (i = 0; i < nleavesCellSF; i++) {
12910a96aa3bSJed Brown             if (remotesExpanded[i].rank >= 0) {
12920a96aa3bSJed Brown               leavesNew[nleavesExpanded] = i;
12930a96aa3bSJed Brown               if (i > nleavesExpanded) remotesExpanded[nleavesExpanded] = remotes[i];
12940a96aa3bSJed Brown               nleavesExpanded++;
12950a96aa3bSJed Brown             }
12960a96aa3bSJed Brown           }
12979566063dSJacob Faibussowitsch           PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)dm), &coarseToPreFineNew));
12980a96aa3bSJed Brown           if (nleavesExpanded < nleavesCellSF) {
12999566063dSJacob Faibussowitsch             PetscCall(PetscSFSetGraph(coarseToPreFineNew, cEnd, nleavesExpanded, leavesNew, PETSC_OWN_POINTER, remotesExpanded, PETSC_COPY_VALUES));
13000a96aa3bSJed Brown           } else {
13019566063dSJacob Faibussowitsch             PetscCall(PetscFree(leavesNew));
13029566063dSJacob Faibussowitsch             PetscCall(PetscSFSetGraph(coarseToPreFineNew, cEnd, nleavesExpanded, NULL, PETSC_OWN_POINTER, remotesExpanded, PETSC_COPY_VALUES));
13030a96aa3bSJed Brown           }
13049566063dSJacob Faibussowitsch           PetscCall(PetscFree(remotesExpanded));
13059566063dSJacob Faibussowitsch           PetscCall(PetscSFDestroy(&coarseToPreFine));
13060a96aa3bSJed Brown           coarseToPreFine = coarseToPreFineNew;
13070a96aa3bSJed Brown         }
13080a96aa3bSJed Brown       }
13090a96aa3bSJed Brown     }
13100a96aa3bSJed Brown   }
13110a96aa3bSJed Brown   forest->preCoarseToFine = preCoarseToFine;
13120a96aa3bSJed Brown   forest->coarseToPreFine = coarseToPreFine;
13130a96aa3bSJed Brown   dm->setupcalled         = PETSC_TRUE;
13145440e5dcSBarry Smith   PetscCallMPI(MPIU_Allreduce(&ctx.anyChange, &pforest->adaptivitySuccess, 1, MPI_C_BOOL, MPI_LOR, PetscObjectComm((PetscObject)dm)));
13159566063dSJacob Faibussowitsch   PetscCall(DMPforestGetPlex(dm, NULL));
13163ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
13170a96aa3bSJed Brown }
13180a96aa3bSJed Brown 
13190a96aa3bSJed Brown   #define DMForestGetAdaptivitySuccess_pforest _append_pforest(DMForestGetAdaptivitySuccess)
DMForestGetAdaptivitySuccess_pforest(DM dm,PetscBool * success)1320d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMForestGetAdaptivitySuccess_pforest(DM dm, PetscBool *success)
1321d71ae5a4SJacob Faibussowitsch {
13220a96aa3bSJed Brown   DM_Forest         *forest;
13230a96aa3bSJed Brown   DM_Forest_pforest *pforest;
13240a96aa3bSJed Brown 
13250a96aa3bSJed Brown   PetscFunctionBegin;
13260a96aa3bSJed Brown   forest   = (DM_Forest *)dm->data;
13270a96aa3bSJed Brown   pforest  = (DM_Forest_pforest *)forest->data;
13280a96aa3bSJed Brown   *success = pforest->adaptivitySuccess;
13293ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
13300a96aa3bSJed Brown }
13310a96aa3bSJed Brown 
13320a96aa3bSJed Brown   #define DMView_ASCII_pforest _append_pforest(DMView_ASCII)
DMView_ASCII_pforest(PetscObject odm,PetscViewer viewer)1333d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMView_ASCII_pforest(PetscObject odm, PetscViewer viewer)
1334d71ae5a4SJacob Faibussowitsch {
13350a96aa3bSJed Brown   DM dm = (DM)odm;
13360a96aa3bSJed Brown 
13370a96aa3bSJed Brown   PetscFunctionBegin;
13380a96aa3bSJed Brown   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
13390a96aa3bSJed Brown   PetscValidHeaderSpecific(viewer, PETSC_VIEWER_CLASSID, 2);
13409566063dSJacob Faibussowitsch   PetscCall(DMSetUp(dm));
13410a96aa3bSJed Brown   switch (viewer->format) {
13420a96aa3bSJed Brown   case PETSC_VIEWER_DEFAULT:
13439371c9d4SSatish Balay   case PETSC_VIEWER_ASCII_INFO: {
13440a96aa3bSJed Brown     PetscInt    dim;
13450a96aa3bSJed Brown     const char *name;
13460a96aa3bSJed Brown 
13479566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetName((PetscObject)dm, &name));
13489566063dSJacob Faibussowitsch     PetscCall(DMGetDimension(dm, &dim));
134963a3b9bcSJacob Faibussowitsch     if (name) PetscCall(PetscViewerASCIIPrintf(viewer, "Forest %s in %" PetscInt_FMT " dimensions:\n", name, dim));
135063a3b9bcSJacob Faibussowitsch     else PetscCall(PetscViewerASCIIPrintf(viewer, "Forest in %" PetscInt_FMT " dimensions:\n", dim));
1351f4d061e9SPierre Jolivet   } /* fall through */
13520a96aa3bSJed Brown   case PETSC_VIEWER_ASCII_INFO_DETAIL:
13539371c9d4SSatish Balay   case PETSC_VIEWER_LOAD_BALANCE: {
13540a96aa3bSJed Brown     DM plex;
13550a96aa3bSJed Brown 
13569566063dSJacob Faibussowitsch     PetscCall(DMPforestGetPlex(dm, &plex));
13579566063dSJacob Faibussowitsch     PetscCall(DMView(plex, viewer));
13589371c9d4SSatish Balay   } break;
1359d71ae5a4SJacob Faibussowitsch   default:
1360d71ae5a4SJacob Faibussowitsch     SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_SUP, "No support for format '%s'", PetscViewerFormats[viewer->format]);
13610a96aa3bSJed Brown   }
13623ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
13630a96aa3bSJed Brown }
13640a96aa3bSJed Brown 
13650a96aa3bSJed Brown   #define DMView_VTK_pforest _append_pforest(DMView_VTK)
DMView_VTK_pforest(PetscObject odm,PetscViewer viewer)1366d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMView_VTK_pforest(PetscObject odm, PetscViewer viewer)
1367d71ae5a4SJacob Faibussowitsch {
13680a96aa3bSJed Brown   DM                 dm      = (DM)odm;
13690a96aa3bSJed Brown   DM_Forest         *forest  = (DM_Forest *)dm->data;
13700a96aa3bSJed Brown   DM_Forest_pforest *pforest = (DM_Forest_pforest *)forest->data;
13710a96aa3bSJed Brown   PetscBool          isvtk;
13720a96aa3bSJed Brown   PetscReal          vtkScale = 1. - PETSC_MACHINE_EPSILON;
13730a96aa3bSJed Brown   PetscViewer_VTK   *vtk      = (PetscViewer_VTK *)viewer->data;
13740a96aa3bSJed Brown   const char        *name;
13750a96aa3bSJed Brown   char              *filenameStrip = NULL;
13760a96aa3bSJed Brown   PetscBool          hasExt;
13770a96aa3bSJed Brown   size_t             len;
13780a96aa3bSJed Brown   p4est_geometry_t  *geom;
13790a96aa3bSJed Brown 
13800a96aa3bSJed Brown   PetscFunctionBegin;
13810a96aa3bSJed Brown   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
13820a96aa3bSJed Brown   PetscValidHeaderSpecific(viewer, PETSC_VIEWER_CLASSID, 2);
13839566063dSJacob Faibussowitsch   PetscCall(DMSetUp(dm));
13840a96aa3bSJed Brown   geom = pforest->topo->geom;
13859566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERVTK, &isvtk));
138628b400f6SJacob Faibussowitsch   PetscCheck(isvtk, PetscObjectComm((PetscObject)viewer), PETSC_ERR_ARG_INCOMP, "Cannot use viewer type %s", ((PetscObject)viewer)->type_name);
13870a96aa3bSJed Brown   switch (viewer->format) {
13880a96aa3bSJed Brown   case PETSC_VIEWER_VTK_VTU:
138928b400f6SJacob Faibussowitsch     PetscCheck(pforest->forest, PetscObjectComm(odm), PETSC_ERR_ARG_WRONG, "DM has not been setup with a valid forest");
13900a96aa3bSJed Brown     name = vtk->filename;
13919566063dSJacob Faibussowitsch     PetscCall(PetscStrlen(name, &len));
13929566063dSJacob Faibussowitsch     PetscCall(PetscStrcasecmp(name + len - 4, ".vtu", &hasExt));
13930a96aa3bSJed Brown     if (hasExt) {
13949566063dSJacob Faibussowitsch       PetscCall(PetscStrallocpy(name, &filenameStrip));
13950a96aa3bSJed Brown       filenameStrip[len - 4] = '\0';
13960a96aa3bSJed Brown       name                   = filenameStrip;
13970a96aa3bSJed Brown     }
1398792fecdfSBarry Smith     if (!pforest->topo->geom) PetscCallP4estReturn(geom, p4est_geometry_new_connectivity, (pforest->topo->conn));
13990a96aa3bSJed Brown     {
14000a96aa3bSJed Brown       p4est_vtk_context_t *pvtk;
14010a96aa3bSJed Brown       int                  footerr;
14020a96aa3bSJed Brown 
1403792fecdfSBarry Smith       PetscCallP4estReturn(pvtk, p4est_vtk_context_new, (pforest->forest, name));
1404792fecdfSBarry Smith       PetscCallP4est(p4est_vtk_context_set_geom, (pvtk, geom));
1405792fecdfSBarry Smith       PetscCallP4est(p4est_vtk_context_set_scale, (pvtk, (double)vtkScale));
1406792fecdfSBarry Smith       PetscCallP4estReturn(pvtk, p4est_vtk_write_header, (pvtk));
140728b400f6SJacob Faibussowitsch       PetscCheck(pvtk, PetscObjectComm((PetscObject)odm), PETSC_ERR_LIB, P4EST_STRING "_vtk_write_header() failed");
14089371c9d4SSatish Balay       PetscCallP4estReturn(pvtk, p4est_vtk_write_cell_dataf,
14099371c9d4SSatish Balay                            (pvtk, 1, /* write tree */
14100a96aa3bSJed Brown                             1,       /* write level */
14110a96aa3bSJed Brown                             1,       /* write rank */
14120a96aa3bSJed Brown                             0,       /* do not wrap rank */
14130a96aa3bSJed Brown                             0,       /* no scalar fields */
14140a96aa3bSJed Brown                             0,       /* no vector fields */
14150a96aa3bSJed Brown                             pvtk));
141628b400f6SJacob Faibussowitsch       PetscCheck(pvtk, PetscObjectComm((PetscObject)odm), PETSC_ERR_LIB, P4EST_STRING "_vtk_write_cell_dataf() failed");
1417792fecdfSBarry Smith       PetscCallP4estReturn(footerr, p4est_vtk_write_footer, (pvtk));
141828b400f6SJacob Faibussowitsch       PetscCheck(!footerr, PetscObjectComm((PetscObject)odm), PETSC_ERR_LIB, P4EST_STRING "_vtk_write_footer() failed");
14190a96aa3bSJed Brown     }
1420792fecdfSBarry Smith     if (!pforest->topo->geom) PetscCallP4est(p4est_geometry_destroy, (geom));
14219566063dSJacob Faibussowitsch     PetscCall(PetscFree(filenameStrip));
14220a96aa3bSJed Brown     break;
1423d71ae5a4SJacob Faibussowitsch   default:
1424d71ae5a4SJacob Faibussowitsch     SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_SUP, "No support for format '%s'", PetscViewerFormats[viewer->format]);
14250a96aa3bSJed Brown   }
14263ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
14270a96aa3bSJed Brown }
14280a96aa3bSJed Brown 
14290a96aa3bSJed Brown   #define DMView_HDF5_pforest _append_pforest(DMView_HDF5)
DMView_HDF5_pforest(DM dm,PetscViewer viewer)1430d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMView_HDF5_pforest(DM dm, PetscViewer viewer)
1431d71ae5a4SJacob Faibussowitsch {
14320a96aa3bSJed Brown   DM plex;
14330a96aa3bSJed Brown 
14340a96aa3bSJed Brown   PetscFunctionBegin;
14359566063dSJacob Faibussowitsch   PetscCall(DMSetUp(dm));
14369566063dSJacob Faibussowitsch   PetscCall(DMPforestGetPlex(dm, &plex));
14379566063dSJacob Faibussowitsch   PetscCall(DMView(plex, viewer));
14383ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
14390a96aa3bSJed Brown }
14400a96aa3bSJed Brown 
14410a96aa3bSJed Brown   #define DMView_GLVis_pforest _append_pforest(DMView_GLVis)
DMView_GLVis_pforest(DM dm,PetscViewer viewer)1442d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMView_GLVis_pforest(DM dm, PetscViewer viewer)
1443d71ae5a4SJacob Faibussowitsch {
14440a96aa3bSJed Brown   DM plex;
14450a96aa3bSJed Brown 
14460a96aa3bSJed Brown   PetscFunctionBegin;
14479566063dSJacob Faibussowitsch   PetscCall(DMSetUp(dm));
14489566063dSJacob Faibussowitsch   PetscCall(DMPforestGetPlex(dm, &plex));
14499566063dSJacob Faibussowitsch   PetscCall(DMView(plex, viewer));
14503ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
14510a96aa3bSJed Brown }
14520a96aa3bSJed Brown 
14530a96aa3bSJed Brown   #define DMView_pforest _append_pforest(DMView)
DMView_pforest(DM dm,PetscViewer viewer)1454d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMView_pforest(DM dm, PetscViewer viewer)
1455d71ae5a4SJacob Faibussowitsch {
14560a96aa3bSJed Brown   PetscBool isascii, isvtk, ishdf5, isglvis;
14570a96aa3bSJed Brown 
14580a96aa3bSJed Brown   PetscFunctionBegin;
14590a96aa3bSJed Brown   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
14600a96aa3bSJed Brown   PetscValidHeaderSpecific(viewer, PETSC_VIEWER_CLASSID, 2);
14619566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERASCII, &isascii));
14629566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERVTK, &isvtk));
14639566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERHDF5, &ishdf5));
14649566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERGLVIS, &isglvis));
14650a96aa3bSJed Brown   if (isascii) {
14669566063dSJacob Faibussowitsch     PetscCall(DMView_ASCII_pforest((PetscObject)dm, viewer));
14670a96aa3bSJed Brown   } else if (isvtk) {
14689566063dSJacob Faibussowitsch     PetscCall(DMView_VTK_pforest((PetscObject)dm, viewer));
14690a96aa3bSJed Brown   } else if (ishdf5) {
14709566063dSJacob Faibussowitsch     PetscCall(DMView_HDF5_pforest(dm, viewer));
14710a96aa3bSJed Brown   } else if (isglvis) {
14729566063dSJacob Faibussowitsch     PetscCall(DMView_GLVis_pforest(dm, viewer));
14730a96aa3bSJed Brown   } else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_SUP, "Viewer not supported (not VTK, HDF5, or GLVis)");
14743ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
14750a96aa3bSJed Brown }
14760a96aa3bSJed Brown 
PforestConnectivityEnumerateFacets(p4est_connectivity_t * conn,PetscInt ** tree_face_to_uniq)1477d71ae5a4SJacob Faibussowitsch static PetscErrorCode PforestConnectivityEnumerateFacets(p4est_connectivity_t *conn, PetscInt **tree_face_to_uniq)
1478d71ae5a4SJacob Faibussowitsch {
14790a96aa3bSJed Brown   PetscInt *ttf, f, t, g, count;
14800a96aa3bSJed Brown   PetscInt  numFacets;
14810a96aa3bSJed Brown 
14820a96aa3bSJed Brown   PetscFunctionBegin;
14830a96aa3bSJed Brown   numFacets = conn->num_trees * P4EST_FACES;
14849566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(numFacets, &ttf));
14850a96aa3bSJed Brown   for (f = 0; f < numFacets; f++) ttf[f] = -1;
14860a96aa3bSJed Brown   for (g = 0, count = 0, t = 0; t < conn->num_trees; t++) {
14870a96aa3bSJed Brown     for (f = 0; f < P4EST_FACES; f++, g++) {
14880a96aa3bSJed Brown       if (ttf[g] == -1) {
14890a96aa3bSJed Brown         PetscInt ng;
14900a96aa3bSJed Brown 
14910a96aa3bSJed Brown         ttf[g]  = count++;
14920a96aa3bSJed Brown         ng      = conn->tree_to_tree[g] * P4EST_FACES + (conn->tree_to_face[g] % P4EST_FACES);
14930a96aa3bSJed Brown         ttf[ng] = ttf[g];
14940a96aa3bSJed Brown       }
14950a96aa3bSJed Brown     }
14960a96aa3bSJed Brown   }
14970a96aa3bSJed Brown   *tree_face_to_uniq = ttf;
14983ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
14990a96aa3bSJed Brown }
15000a96aa3bSJed Brown 
DMPlexCreateConnectivity_pforest(DM dm,p4est_connectivity_t ** connOut,PetscInt ** tree_face_to_uniq)1501d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexCreateConnectivity_pforest(DM dm, p4est_connectivity_t **connOut, PetscInt **tree_face_to_uniq)
1502d71ae5a4SJacob Faibussowitsch {
15030a96aa3bSJed Brown   p4est_topidx_t numTrees, numVerts, numCorns, numCtt;
15040a96aa3bSJed Brown   PetscSection   ctt;
15050a96aa3bSJed Brown   #if defined(P4_TO_P8)
15060a96aa3bSJed Brown   p4est_topidx_t numEdges, numEtt;
15070a96aa3bSJed Brown   PetscSection   ett;
15080a96aa3bSJed Brown   PetscInt       eStart, eEnd, e, ettSize;
15090a96aa3bSJed Brown   PetscInt       vertOff = 1 + P4EST_FACES + P8EST_EDGES;
15100a96aa3bSJed Brown   PetscInt       edgeOff = 1 + P4EST_FACES;
15110a96aa3bSJed Brown   #else
15120a96aa3bSJed Brown   PetscInt vertOff = 1 + P4EST_FACES;
15130a96aa3bSJed Brown   #endif
15140a96aa3bSJed Brown   p4est_connectivity_t *conn;
15150a96aa3bSJed Brown   PetscInt              cStart, cEnd, c, vStart, vEnd, v, fStart, fEnd, f;
15160a96aa3bSJed Brown   PetscInt             *star = NULL, *closure = NULL, closureSize, starSize, cttSize;
15170a96aa3bSJed Brown   PetscInt             *ttf;
15180a96aa3bSJed Brown 
15190a96aa3bSJed Brown   PetscFunctionBegin;
15200a96aa3bSJed Brown   /* 1: count objects, allocate */
15219566063dSJacob Faibussowitsch   PetscCall(DMPlexGetSimplexOrBoxCells(dm, 0, &cStart, &cEnd));
15229566063dSJacob Faibussowitsch   PetscCall(P4estTopidxCast(cEnd - cStart, &numTrees));
15230a96aa3bSJed Brown   numVerts = P4EST_CHILDREN * numTrees;
15249566063dSJacob Faibussowitsch   PetscCall(DMPlexGetDepthStratum(dm, 0, &vStart, &vEnd));
15259566063dSJacob Faibussowitsch   PetscCall(P4estTopidxCast(vEnd - vStart, &numCorns));
15269566063dSJacob Faibussowitsch   PetscCall(PetscSectionCreate(PETSC_COMM_SELF, &ctt));
15279566063dSJacob Faibussowitsch   PetscCall(PetscSectionSetChart(ctt, vStart, vEnd));
15280a96aa3bSJed Brown   for (v = vStart; v < vEnd; v++) {
15290a96aa3bSJed Brown     PetscInt s;
15300a96aa3bSJed Brown 
15319566063dSJacob Faibussowitsch     PetscCall(DMPlexGetTransitiveClosure(dm, v, PETSC_FALSE, &starSize, &star));
15320a96aa3bSJed Brown     for (s = 0; s < starSize; s++) {
15330a96aa3bSJed Brown       PetscInt p = star[2 * s];
15340a96aa3bSJed Brown 
15350a96aa3bSJed Brown       if (p >= cStart && p < cEnd) {
15360a96aa3bSJed Brown         /* we want to count every time cell p references v, so we see how many times it comes up in the closure.  This
15370a96aa3bSJed Brown          * only protects against periodicity problems */
15389566063dSJacob Faibussowitsch         PetscCall(DMPlexGetTransitiveClosure(dm, p, PETSC_TRUE, &closureSize, &closure));
153963a3b9bcSJacob Faibussowitsch         PetscCheck(closureSize == P4EST_INSUL, PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "Cell %" PetscInt_FMT " with wrong closure size %" PetscInt_FMT " != %d", p, closureSize, P4EST_INSUL);
15400a96aa3bSJed Brown         for (c = 0; c < P4EST_CHILDREN; c++) {
15410a96aa3bSJed Brown           PetscInt cellVert = closure[2 * (c + vertOff)];
15420a96aa3bSJed Brown 
15431dca8a05SBarry Smith           PetscCheck(cellVert >= vStart && cellVert < vEnd, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Non-standard closure: vertices");
154448a46eb9SPierre Jolivet           if (cellVert == v) PetscCall(PetscSectionAddDof(ctt, v, 1));
15450a96aa3bSJed Brown         }
15469566063dSJacob Faibussowitsch         PetscCall(DMPlexRestoreTransitiveClosure(dm, p, PETSC_TRUE, &closureSize, &closure));
15470a96aa3bSJed Brown       }
15480a96aa3bSJed Brown     }
15499566063dSJacob Faibussowitsch     PetscCall(DMPlexRestoreTransitiveClosure(dm, v, PETSC_FALSE, &starSize, &star));
15500a96aa3bSJed Brown   }
15519566063dSJacob Faibussowitsch   PetscCall(PetscSectionSetUp(ctt));
15529566063dSJacob Faibussowitsch   PetscCall(PetscSectionGetStorageSize(ctt, &cttSize));
15539566063dSJacob Faibussowitsch   PetscCall(P4estTopidxCast(cttSize, &numCtt));
15540a96aa3bSJed Brown   #if defined(P4_TO_P8)
15559566063dSJacob Faibussowitsch   PetscCall(DMPlexGetSimplexOrBoxCells(dm, P4EST_DIM - 1, &eStart, &eEnd));
15569566063dSJacob Faibussowitsch   PetscCall(P4estTopidxCast(eEnd - eStart, &numEdges));
15579566063dSJacob Faibussowitsch   PetscCall(PetscSectionCreate(PETSC_COMM_SELF, &ett));
15589566063dSJacob Faibussowitsch   PetscCall(PetscSectionSetChart(ett, eStart, eEnd));
15590a96aa3bSJed Brown   for (e = eStart; e < eEnd; e++) {
15600a96aa3bSJed Brown     PetscInt s;
15610a96aa3bSJed Brown 
15629566063dSJacob Faibussowitsch     PetscCall(DMPlexGetTransitiveClosure(dm, e, PETSC_FALSE, &starSize, &star));
15630a96aa3bSJed Brown     for (s = 0; s < starSize; s++) {
15640a96aa3bSJed Brown       PetscInt p = star[2 * s];
15650a96aa3bSJed Brown 
15660a96aa3bSJed Brown       if (p >= cStart && p < cEnd) {
15670a96aa3bSJed Brown         /* we want to count every time cell p references e, so we see how many times it comes up in the closure.  This
15680a96aa3bSJed Brown          * only protects against periodicity problems */
15699566063dSJacob Faibussowitsch         PetscCall(DMPlexGetTransitiveClosure(dm, p, PETSC_TRUE, &closureSize, &closure));
157008401ef6SPierre Jolivet         PetscCheck(closureSize == P4EST_INSUL, PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "Cell with wrong closure size");
15710a96aa3bSJed Brown         for (c = 0; c < P8EST_EDGES; c++) {
15720a96aa3bSJed Brown           PetscInt cellEdge = closure[2 * (c + edgeOff)];
15730a96aa3bSJed Brown 
15741dca8a05SBarry Smith           PetscCheck(cellEdge >= eStart && cellEdge < eEnd, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Non-standard closure: edges");
157548a46eb9SPierre Jolivet           if (cellEdge == e) PetscCall(PetscSectionAddDof(ett, e, 1));
15760a96aa3bSJed Brown         }
15779566063dSJacob Faibussowitsch         PetscCall(DMPlexRestoreTransitiveClosure(dm, p, PETSC_TRUE, &closureSize, &closure));
15780a96aa3bSJed Brown       }
15790a96aa3bSJed Brown     }
15809566063dSJacob Faibussowitsch     PetscCall(DMPlexRestoreTransitiveClosure(dm, e, PETSC_FALSE, &starSize, &star));
15810a96aa3bSJed Brown   }
15829566063dSJacob Faibussowitsch   PetscCall(PetscSectionSetUp(ett));
15839566063dSJacob Faibussowitsch   PetscCall(PetscSectionGetStorageSize(ett, &ettSize));
15849566063dSJacob Faibussowitsch   PetscCall(P4estTopidxCast(ettSize, &numEtt));
15850a96aa3bSJed Brown 
15860a96aa3bSJed Brown   /* This routine allocates space for the arrays, which we fill below */
1587792fecdfSBarry Smith   PetscCallP4estReturn(conn, p8est_connectivity_new, (numVerts, numTrees, numEdges, numEtt, numCorns, numCtt));
15880a96aa3bSJed Brown   #else
1589792fecdfSBarry Smith   PetscCallP4estReturn(conn, p4est_connectivity_new, (numVerts, numTrees, numCorns, numCtt));
15900a96aa3bSJed Brown   #endif
15910a96aa3bSJed Brown 
15920a96aa3bSJed Brown   /* 2: visit every face, determine neighboring cells(trees) */
15939566063dSJacob Faibussowitsch   PetscCall(DMPlexGetSimplexOrBoxCells(dm, 1, &fStart, &fEnd));
15949566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1((cEnd - cStart) * P4EST_FACES, &ttf));
15950a96aa3bSJed Brown   for (f = fStart; f < fEnd; f++) {
15960a96aa3bSJed Brown     PetscInt        numSupp, s;
15970a96aa3bSJed Brown     PetscInt        myFace[2] = {-1, -1};
15981690c2aeSBarry Smith     PetscInt        myOrnt[2] = {PETSC_INT_MIN, PETSC_INT_MIN};
15990a96aa3bSJed Brown     const PetscInt *supp;
16000a96aa3bSJed Brown 
16019566063dSJacob Faibussowitsch     PetscCall(DMPlexGetSupportSize(dm, f, &numSupp));
16021dca8a05SBarry Smith     PetscCheck(numSupp == 1 || numSupp == 2, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "point %" PetscInt_FMT " has facet with %" PetscInt_FMT " sides: must be 1 or 2 (boundary or conformal)", f, numSupp);
16039566063dSJacob Faibussowitsch     PetscCall(DMPlexGetSupport(dm, f, &supp));
16040a96aa3bSJed Brown 
16050a96aa3bSJed Brown     for (s = 0; s < numSupp; s++) {
16060a96aa3bSJed Brown       PetscInt p = supp[s];
16070a96aa3bSJed Brown 
16080a96aa3bSJed Brown       if (p >= cEnd) {
16090a96aa3bSJed Brown         numSupp--;
16100a96aa3bSJed Brown         if (s) supp = &supp[1 - s];
16110a96aa3bSJed Brown         break;
16120a96aa3bSJed Brown       }
16130a96aa3bSJed Brown     }
16140a96aa3bSJed Brown     for (s = 0; s < numSupp; s++) {
16150a96aa3bSJed Brown       PetscInt        p = supp[s], i;
16160a96aa3bSJed Brown       PetscInt        numCone;
16170a96aa3bSJed Brown       DMPolytopeType  ct;
16180a96aa3bSJed Brown       const PetscInt *cone;
16190a96aa3bSJed Brown       const PetscInt *ornt;
16201690c2aeSBarry Smith       PetscInt        orient = PETSC_INT_MIN;
16210a96aa3bSJed Brown 
16229566063dSJacob Faibussowitsch       PetscCall(DMPlexGetConeSize(dm, p, &numCone));
162363a3b9bcSJacob Faibussowitsch       PetscCheck(numCone == P4EST_FACES, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "cell %" PetscInt_FMT " has %" PetscInt_FMT " facets, expect %d", p, numCone, P4EST_FACES);
16249566063dSJacob Faibussowitsch       PetscCall(DMPlexGetCone(dm, p, &cone));
16259566063dSJacob Faibussowitsch       PetscCall(DMPlexGetCellType(dm, cone[0], &ct));
16269566063dSJacob Faibussowitsch       PetscCall(DMPlexGetConeOrientation(dm, p, &ornt));
16270a96aa3bSJed Brown       for (i = 0; i < P4EST_FACES; i++) {
16280a96aa3bSJed Brown         if (cone[i] == f) {
16290a96aa3bSJed Brown           orient = DMPolytopeConvertNewOrientation_Internal(ct, ornt[i]);
16300a96aa3bSJed Brown           break;
16310a96aa3bSJed Brown         }
16320a96aa3bSJed Brown       }
163363a3b9bcSJacob Faibussowitsch       PetscCheck(i < P4EST_FACES, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "cell %" PetscInt_FMT " faced %" PetscInt_FMT " mismatch", p, f);
16340a96aa3bSJed Brown       if (p < cStart || p >= cEnd) {
16350a96aa3bSJed Brown         DMPolytopeType ct;
16369566063dSJacob Faibussowitsch         PetscCall(DMPlexGetCellType(dm, p, &ct));
163763a3b9bcSJacob Faibussowitsch         SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "cell %" PetscInt_FMT " (%s) should be in [%" PetscInt_FMT ", %" PetscInt_FMT ")", p, DMPolytopeTypes[ct], cStart, cEnd);
16380a96aa3bSJed Brown       }
16390a96aa3bSJed Brown       ttf[P4EST_FACES * (p - cStart) + PetscFaceToP4estFace[i]] = f - fStart;
16400a96aa3bSJed Brown       if (numSupp == 1) {
16410a96aa3bSJed Brown         /* boundary faces indicated by self reference */
16420a96aa3bSJed Brown         conn->tree_to_tree[P4EST_FACES * (p - cStart) + PetscFaceToP4estFace[i]] = p - cStart;
16430a96aa3bSJed Brown         conn->tree_to_face[P4EST_FACES * (p - cStart) + PetscFaceToP4estFace[i]] = (int8_t)PetscFaceToP4estFace[i];
16440a96aa3bSJed Brown       } else {
16450a96aa3bSJed Brown         const PetscInt N = P4EST_CHILDREN / 2;
16460a96aa3bSJed Brown 
16470a96aa3bSJed Brown         conn->tree_to_tree[P4EST_FACES * (p - cStart) + PetscFaceToP4estFace[i]] = supp[1 - s] - cStart;
16480a96aa3bSJed Brown         myFace[s]                                                                = PetscFaceToP4estFace[i];
16490a96aa3bSJed Brown         /* get the orientation of cell p in p4est-type closure to facet f, by composing the p4est-closure to
16500a96aa3bSJed Brown          * petsc-closure permutation and the petsc-closure to facet orientation */
16510a96aa3bSJed Brown         myOrnt[s] = DihedralCompose(N, orient, DMPolytopeConvertNewOrientation_Internal(ct, P4estFaceToPetscOrnt[myFace[s]]));
16520a96aa3bSJed Brown       }
16530a96aa3bSJed Brown     }
16540a96aa3bSJed Brown     if (numSupp == 2) {
16550a96aa3bSJed Brown       for (s = 0; s < numSupp; s++) {
16560a96aa3bSJed Brown         PetscInt       p = supp[s];
16570a96aa3bSJed Brown         PetscInt       orntAtoB;
16580a96aa3bSJed Brown         PetscInt       p4estOrient;
16590a96aa3bSJed Brown         const PetscInt N = P4EST_CHILDREN / 2;
16600a96aa3bSJed Brown 
16610a96aa3bSJed Brown         /* composing the forward permutation with the other cell's inverse permutation gives the self-to-neighbor
16620a96aa3bSJed Brown          * permutation of this cell-facet's cone */
16630a96aa3bSJed Brown         orntAtoB = DihedralCompose(N, DihedralInvert(N, myOrnt[1 - s]), myOrnt[s]);
16640a96aa3bSJed Brown 
16650a96aa3bSJed Brown         /* convert cone-description permutation (i.e., edges around facet) to cap-description permutation (i.e.,
16660a96aa3bSJed Brown          * vertices around facet) */
16670a96aa3bSJed Brown   #if !defined(P4_TO_P8)
16680a96aa3bSJed Brown         p4estOrient = orntAtoB < 0 ? -(orntAtoB + 1) : orntAtoB;
16690a96aa3bSJed Brown   #else
16700a96aa3bSJed Brown         {
16710a96aa3bSJed Brown           PetscInt firstVert      = orntAtoB < 0 ? ((-orntAtoB) % N) : orntAtoB;
16720a96aa3bSJed Brown           PetscInt p4estFirstVert = firstVert < 2 ? firstVert : (firstVert ^ 1);
16730a96aa3bSJed Brown 
16740a96aa3bSJed Brown           /* swap bits */
16750a96aa3bSJed Brown           p4estOrient = ((myFace[s] <= myFace[1 - s]) || (orntAtoB < 0)) ? p4estFirstVert : ((p4estFirstVert >> 1) | ((p4estFirstVert & 1) << 1));
16760a96aa3bSJed Brown         }
16770a96aa3bSJed Brown   #endif
16780a96aa3bSJed Brown         /* encode neighbor face and orientation in tree_to_face per p4est_connectivity standard (see
16790a96aa3bSJed Brown          * p4est_connectivity.h, p8est_connectivity.h) */
16806497c311SBarry Smith         conn->tree_to_face[P4EST_FACES * (p - cStart) + myFace[s]] = (int8_t)(myFace[1 - s] + p4estOrient * P4EST_FACES);
16810a96aa3bSJed Brown       }
16820a96aa3bSJed Brown     }
16830a96aa3bSJed Brown   }
16840a96aa3bSJed Brown 
16850a96aa3bSJed Brown   #if defined(P4_TO_P8)
16860a96aa3bSJed Brown   /* 3: visit every edge */
16870a96aa3bSJed Brown   conn->ett_offset[0] = 0;
16880a96aa3bSJed Brown   for (e = eStart; e < eEnd; e++) {
16890a96aa3bSJed Brown     PetscInt off, s;
16900a96aa3bSJed Brown 
16919566063dSJacob Faibussowitsch     PetscCall(PetscSectionGetOffset(ett, e, &off));
16920a96aa3bSJed Brown     conn->ett_offset[e - eStart] = (p4est_topidx_t)off;
16939566063dSJacob Faibussowitsch     PetscCall(DMPlexGetTransitiveClosure(dm, e, PETSC_FALSE, &starSize, &star));
16940a96aa3bSJed Brown     for (s = 0; s < starSize; s++) {
16950a96aa3bSJed Brown       PetscInt p = star[2 * s];
16960a96aa3bSJed Brown 
16970a96aa3bSJed Brown       if (p >= cStart && p < cEnd) {
16989566063dSJacob Faibussowitsch         PetscCall(DMPlexGetTransitiveClosure(dm, p, PETSC_TRUE, &closureSize, &closure));
169908401ef6SPierre Jolivet         PetscCheck(closureSize == P4EST_INSUL, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Non-standard closure");
17000a96aa3bSJed Brown         for (c = 0; c < P8EST_EDGES; c++) {
17010a96aa3bSJed Brown           PetscInt       cellEdge = closure[2 * (c + edgeOff)];
17020a96aa3bSJed Brown           PetscInt       cellOrnt = closure[2 * (c + edgeOff) + 1];
17030a96aa3bSJed Brown           DMPolytopeType ct;
17040a96aa3bSJed Brown 
17059566063dSJacob Faibussowitsch           PetscCall(DMPlexGetCellType(dm, cellEdge, &ct));
17060a96aa3bSJed Brown           cellOrnt = DMPolytopeConvertNewOrientation_Internal(ct, cellOrnt);
17070a96aa3bSJed Brown           if (cellEdge == e) {
17080a96aa3bSJed Brown             PetscInt p4estEdge = PetscEdgeToP4estEdge[c];
17090a96aa3bSJed Brown             PetscInt totalOrient;
17100a96aa3bSJed Brown 
17110a96aa3bSJed Brown             /* compose p4est-closure to petsc-closure permutation and petsc-closure to edge orientation */
17120a96aa3bSJed Brown             totalOrient = DihedralCompose(2, cellOrnt, DMPolytopeConvertNewOrientation_Internal(DM_POLYTOPE_SEGMENT, P4estEdgeToPetscOrnt[p4estEdge]));
17130a96aa3bSJed Brown             /* p4est orientations are positive: -2 => 1, -1 => 0 */
17140a96aa3bSJed Brown             totalOrient             = (totalOrient < 0) ? -(totalOrient + 1) : totalOrient;
17150a96aa3bSJed Brown             conn->edge_to_tree[off] = (p4est_locidx_t)(p - cStart);
1716d5b43468SJose E. Roman             /* encode cell-edge and orientation in edge_to_edge per p8est_connectivity standard (see
17170a96aa3bSJed Brown              * p8est_connectivity.h) */
17186497c311SBarry Smith             conn->edge_to_edge[off++]                                  = (int8_t)(p4estEdge + P8EST_EDGES * totalOrient);
17190a96aa3bSJed Brown             conn->tree_to_edge[P8EST_EDGES * (p - cStart) + p4estEdge] = e - eStart;
17200a96aa3bSJed Brown           }
17210a96aa3bSJed Brown         }
17229566063dSJacob Faibussowitsch         PetscCall(DMPlexRestoreTransitiveClosure(dm, p, PETSC_TRUE, &closureSize, &closure));
17230a96aa3bSJed Brown       }
17240a96aa3bSJed Brown     }
17259566063dSJacob Faibussowitsch     PetscCall(DMPlexRestoreTransitiveClosure(dm, e, PETSC_FALSE, &starSize, &star));
17260a96aa3bSJed Brown   }
17279566063dSJacob Faibussowitsch   PetscCall(PetscSectionDestroy(&ett));
17280a96aa3bSJed Brown   #endif
17290a96aa3bSJed Brown 
17300a96aa3bSJed Brown   /* 4: visit every vertex */
17310a96aa3bSJed Brown   conn->ctt_offset[0] = 0;
17320a96aa3bSJed Brown   for (v = vStart; v < vEnd; v++) {
17330a96aa3bSJed Brown     PetscInt off, s;
17340a96aa3bSJed Brown 
17359566063dSJacob Faibussowitsch     PetscCall(PetscSectionGetOffset(ctt, v, &off));
17360a96aa3bSJed Brown     conn->ctt_offset[v - vStart] = (p4est_topidx_t)off;
17379566063dSJacob Faibussowitsch     PetscCall(DMPlexGetTransitiveClosure(dm, v, PETSC_FALSE, &starSize, &star));
17380a96aa3bSJed Brown     for (s = 0; s < starSize; s++) {
17390a96aa3bSJed Brown       PetscInt p = star[2 * s];
17400a96aa3bSJed Brown 
17410a96aa3bSJed Brown       if (p >= cStart && p < cEnd) {
17429566063dSJacob Faibussowitsch         PetscCall(DMPlexGetTransitiveClosure(dm, p, PETSC_TRUE, &closureSize, &closure));
174308401ef6SPierre Jolivet         PetscCheck(closureSize == P4EST_INSUL, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Non-standard closure");
17440a96aa3bSJed Brown         for (c = 0; c < P4EST_CHILDREN; c++) {
17450a96aa3bSJed Brown           PetscInt cellVert = closure[2 * (c + vertOff)];
17460a96aa3bSJed Brown 
17470a96aa3bSJed Brown           if (cellVert == v) {
17480a96aa3bSJed Brown             PetscInt p4estVert = PetscVertToP4estVert[c];
17490a96aa3bSJed Brown 
17500a96aa3bSJed Brown             conn->corner_to_tree[off]                                       = (p4est_locidx_t)(p - cStart);
17510a96aa3bSJed Brown             conn->corner_to_corner[off++]                                   = (int8_t)p4estVert;
17520a96aa3bSJed Brown             conn->tree_to_corner[P4EST_CHILDREN * (p - cStart) + p4estVert] = v - vStart;
17530a96aa3bSJed Brown           }
17540a96aa3bSJed Brown         }
17559566063dSJacob Faibussowitsch         PetscCall(DMPlexRestoreTransitiveClosure(dm, p, PETSC_TRUE, &closureSize, &closure));
17560a96aa3bSJed Brown       }
17570a96aa3bSJed Brown     }
17589566063dSJacob Faibussowitsch     PetscCall(DMPlexRestoreTransitiveClosure(dm, v, PETSC_FALSE, &starSize, &star));
17590a96aa3bSJed Brown   }
17609566063dSJacob Faibussowitsch   PetscCall(PetscSectionDestroy(&ctt));
17610a96aa3bSJed Brown 
17620a96aa3bSJed Brown   /* 5: Compute the coordinates */
17630a96aa3bSJed Brown   {
17640a96aa3bSJed Brown     PetscInt coordDim;
17650a96aa3bSJed Brown 
17669566063dSJacob Faibussowitsch     PetscCall(DMGetCoordinateDim(dm, &coordDim));
17676858538eSMatthew G. Knepley     PetscCall(DMGetCoordinatesLocalSetUp(dm));
17680a96aa3bSJed Brown     for (c = cStart; c < cEnd; c++) {
17690a96aa3bSJed Brown       PetscInt           dof;
17706858538eSMatthew G. Knepley       PetscBool          isDG;
17710a96aa3bSJed Brown       PetscScalar       *cellCoords = NULL;
17726858538eSMatthew G. Knepley       const PetscScalar *array;
17730a96aa3bSJed Brown 
17746858538eSMatthew G. Knepley       PetscCall(DMPlexGetCellCoordinates(dm, c, &isDG, &dof, &array, &cellCoords));
17756858538eSMatthew G. Knepley       PetscCheck(dof == P4EST_CHILDREN * coordDim, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Need coordinates at the corners: (dof) %" PetscInt_FMT " != %d * %" PetscInt_FMT " (sdim)", dof, P4EST_CHILDREN, coordDim);
17760a96aa3bSJed Brown       for (v = 0; v < P4EST_CHILDREN; v++) {
17770a96aa3bSJed Brown         PetscInt i, lim = PetscMin(3, coordDim);
17780a96aa3bSJed Brown         PetscInt p4estVert = PetscVertToP4estVert[v];
17790a96aa3bSJed Brown 
17800a96aa3bSJed Brown         conn->tree_to_vertex[P4EST_CHILDREN * (c - cStart) + v] = P4EST_CHILDREN * (c - cStart) + v;
17810a96aa3bSJed Brown         /* p4est vertices are always embedded in R^3 */
17820a96aa3bSJed Brown         for (i = 0; i < 3; i++) conn->vertices[3 * (P4EST_CHILDREN * (c - cStart) + p4estVert) + i] = 0.;
17830a96aa3bSJed Brown         for (i = 0; i < lim; i++) conn->vertices[3 * (P4EST_CHILDREN * (c - cStart) + p4estVert) + i] = PetscRealPart(cellCoords[v * coordDim + i]);
17840a96aa3bSJed Brown       }
17856858538eSMatthew G. Knepley       PetscCall(DMPlexRestoreCellCoordinates(dm, c, &isDG, &dof, &array, &cellCoords));
17860a96aa3bSJed Brown     }
17870a96aa3bSJed Brown   }
17880a96aa3bSJed Brown 
17890a96aa3bSJed Brown   #if defined(P4EST_ENABLE_DEBUG)
179008401ef6SPierre Jolivet   PetscCheck(p4est_connectivity_is_valid(conn), PETSC_COMM_SELF, PETSC_ERR_PLIB, "Plex to p4est conversion failed");
17910a96aa3bSJed Brown   #endif
17920a96aa3bSJed Brown 
17930a96aa3bSJed Brown   *connOut = conn;
17940a96aa3bSJed Brown 
17950a96aa3bSJed Brown   *tree_face_to_uniq = ttf;
17963ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
17970a96aa3bSJed Brown }
17980a96aa3bSJed Brown 
locidx_to_PetscInt(sc_array_t * array)1799d71ae5a4SJacob Faibussowitsch static PetscErrorCode locidx_to_PetscInt(sc_array_t *array)
1800d71ae5a4SJacob Faibussowitsch {
18010a96aa3bSJed Brown   sc_array_t *newarray;
18020a96aa3bSJed Brown   size_t      zz, count = array->elem_count;
18030a96aa3bSJed Brown 
18040a96aa3bSJed Brown   PetscFunctionBegin;
180508401ef6SPierre Jolivet   PetscCheck(array->elem_size == sizeof(p4est_locidx_t), PETSC_COMM_SELF, PETSC_ERR_PLIB, "Wrong locidx size");
18060a96aa3bSJed Brown 
18073ba16761SJacob Faibussowitsch   if (sizeof(p4est_locidx_t) == sizeof(PetscInt)) PetscFunctionReturn(PETSC_SUCCESS);
18080a96aa3bSJed Brown 
18090a96aa3bSJed Brown   newarray = sc_array_new_size(sizeof(PetscInt), array->elem_count);
18100a96aa3bSJed Brown   for (zz = 0; zz < count; zz++) {
18110a96aa3bSJed Brown     p4est_locidx_t il = *((p4est_locidx_t *)sc_array_index(array, zz));
18120a96aa3bSJed Brown     PetscInt      *ip = (PetscInt *)sc_array_index(newarray, zz);
18130a96aa3bSJed Brown 
18140a96aa3bSJed Brown     *ip = (PetscInt)il;
18150a96aa3bSJed Brown   }
18160a96aa3bSJed Brown 
18170a96aa3bSJed Brown   sc_array_reset(array);
18180a96aa3bSJed Brown   sc_array_init_size(array, sizeof(PetscInt), count);
18190a96aa3bSJed Brown   sc_array_copy(array, newarray);
18200a96aa3bSJed Brown   sc_array_destroy(newarray);
18213ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
18220a96aa3bSJed Brown }
18230a96aa3bSJed Brown 
coords_double_to_PetscScalar(sc_array_t * array,PetscInt dim)1824d71ae5a4SJacob Faibussowitsch static PetscErrorCode coords_double_to_PetscScalar(sc_array_t *array, PetscInt dim)
1825d71ae5a4SJacob Faibussowitsch {
18260a96aa3bSJed Brown   sc_array_t *newarray;
18270a96aa3bSJed Brown   size_t      zz, count = array->elem_count;
18280a96aa3bSJed Brown 
18290a96aa3bSJed Brown   PetscFunctionBegin;
18301dca8a05SBarry Smith   PetscCheck(array->elem_size == 3 * sizeof(double), PETSC_COMM_SELF, PETSC_ERR_PLIB, "Wrong coordinate size");
18310a96aa3bSJed Brown   #if !defined(PETSC_USE_COMPLEX)
18323ba16761SJacob Faibussowitsch   if (sizeof(double) == sizeof(PetscScalar) && dim == 3) PetscFunctionReturn(PETSC_SUCCESS);
18330a96aa3bSJed Brown   #endif
18340a96aa3bSJed Brown 
18350a96aa3bSJed Brown   newarray = sc_array_new_size(dim * sizeof(PetscScalar), array->elem_count);
18360a96aa3bSJed Brown   for (zz = 0; zz < count; zz++) {
18370a96aa3bSJed Brown     int          i;
18380a96aa3bSJed Brown     double      *id = (double *)sc_array_index(array, zz);
18390a96aa3bSJed Brown     PetscScalar *ip = (PetscScalar *)sc_array_index(newarray, zz);
18400a96aa3bSJed Brown 
18410a96aa3bSJed Brown     for (i = 0; i < dim; i++) ip[i] = 0.;
18420a96aa3bSJed Brown     for (i = 0; i < PetscMin(dim, 3); i++) ip[i] = (PetscScalar)id[i];
18430a96aa3bSJed Brown   }
18440a96aa3bSJed Brown 
18450a96aa3bSJed Brown   sc_array_reset(array);
18460a96aa3bSJed Brown   sc_array_init_size(array, dim * sizeof(PetscScalar), count);
18470a96aa3bSJed Brown   sc_array_copy(array, newarray);
18480a96aa3bSJed Brown   sc_array_destroy(newarray);
18493ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
18500a96aa3bSJed Brown }
18510a96aa3bSJed Brown 
locidx_pair_to_PetscSFNode(sc_array_t * array)1852d71ae5a4SJacob Faibussowitsch static PetscErrorCode locidx_pair_to_PetscSFNode(sc_array_t *array)
1853d71ae5a4SJacob Faibussowitsch {
18540a96aa3bSJed Brown   sc_array_t *newarray;
18550a96aa3bSJed Brown   size_t      zz, count = array->elem_count;
18560a96aa3bSJed Brown 
18570a96aa3bSJed Brown   PetscFunctionBegin;
18581dca8a05SBarry Smith   PetscCheck(array->elem_size == 2 * sizeof(p4est_locidx_t), PETSC_COMM_SELF, PETSC_ERR_PLIB, "Wrong locidx size");
18590a96aa3bSJed Brown 
18600a96aa3bSJed Brown   newarray = sc_array_new_size(sizeof(PetscSFNode), array->elem_count);
18610a96aa3bSJed Brown   for (zz = 0; zz < count; zz++) {
18620a96aa3bSJed Brown     p4est_locidx_t *il = (p4est_locidx_t *)sc_array_index(array, zz);
18630a96aa3bSJed Brown     PetscSFNode    *ip = (PetscSFNode *)sc_array_index(newarray, zz);
18640a96aa3bSJed Brown 
18650a96aa3bSJed Brown     ip->rank  = (PetscInt)il[0];
18660a96aa3bSJed Brown     ip->index = (PetscInt)il[1];
18670a96aa3bSJed Brown   }
18680a96aa3bSJed Brown 
18690a96aa3bSJed Brown   sc_array_reset(array);
18700a96aa3bSJed Brown   sc_array_init_size(array, sizeof(PetscSFNode), count);
18710a96aa3bSJed Brown   sc_array_copy(array, newarray);
18720a96aa3bSJed Brown   sc_array_destroy(newarray);
18733ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
18740a96aa3bSJed Brown }
18750a96aa3bSJed Brown 
P4estToPlex_Local(p4est_t * p4est,DM * plex)1876d71ae5a4SJacob Faibussowitsch static PetscErrorCode P4estToPlex_Local(p4est_t *p4est, DM *plex)
1877d71ae5a4SJacob Faibussowitsch {
18780a96aa3bSJed Brown   PetscFunctionBegin;
18790a96aa3bSJed Brown   {
18800a96aa3bSJed Brown     sc_array_t    *points_per_dim    = sc_array_new(sizeof(p4est_locidx_t));
18810a96aa3bSJed Brown     sc_array_t    *cone_sizes        = sc_array_new(sizeof(p4est_locidx_t));
18820a96aa3bSJed Brown     sc_array_t    *cones             = sc_array_new(sizeof(p4est_locidx_t));
18830a96aa3bSJed Brown     sc_array_t    *cone_orientations = sc_array_new(sizeof(p4est_locidx_t));
18840a96aa3bSJed Brown     sc_array_t    *coords            = sc_array_new(3 * sizeof(double));
18850a96aa3bSJed Brown     sc_array_t    *children          = sc_array_new(sizeof(p4est_locidx_t));
18860a96aa3bSJed Brown     sc_array_t    *parents           = sc_array_new(sizeof(p4est_locidx_t));
18870a96aa3bSJed Brown     sc_array_t    *childids          = sc_array_new(sizeof(p4est_locidx_t));
18880a96aa3bSJed Brown     sc_array_t    *leaves            = sc_array_new(sizeof(p4est_locidx_t));
18890a96aa3bSJed Brown     sc_array_t    *remotes           = sc_array_new(2 * sizeof(p4est_locidx_t));
18900a96aa3bSJed Brown     p4est_locidx_t first_local_quad;
18910a96aa3bSJed Brown 
1892792fecdfSBarry Smith     PetscCallP4est(p4est_get_plex_data, (p4est, P4EST_CONNECT_FULL, 0, &first_local_quad, points_per_dim, cone_sizes, cones, cone_orientations, coords, children, parents, childids, leaves, remotes));
18930a96aa3bSJed Brown 
18949566063dSJacob Faibussowitsch     PetscCall(locidx_to_PetscInt(points_per_dim));
18959566063dSJacob Faibussowitsch     PetscCall(locidx_to_PetscInt(cone_sizes));
18969566063dSJacob Faibussowitsch     PetscCall(locidx_to_PetscInt(cones));
18979566063dSJacob Faibussowitsch     PetscCall(locidx_to_PetscInt(cone_orientations));
18989566063dSJacob Faibussowitsch     PetscCall(coords_double_to_PetscScalar(coords, P4EST_DIM));
18990a96aa3bSJed Brown 
19009566063dSJacob Faibussowitsch     PetscCall(DMPlexCreate(PETSC_COMM_SELF, plex));
19019566063dSJacob Faibussowitsch     PetscCall(DMSetDimension(*plex, P4EST_DIM));
19029566063dSJacob Faibussowitsch     PetscCall(DMPlexCreateFromDAG(*plex, P4EST_DIM, (PetscInt *)points_per_dim->array, (PetscInt *)cone_sizes->array, (PetscInt *)cones->array, (PetscInt *)cone_orientations->array, (PetscScalar *)coords->array));
19039566063dSJacob Faibussowitsch     PetscCall(DMPlexConvertOldOrientations_Internal(*plex));
19040a96aa3bSJed Brown     sc_array_destroy(points_per_dim);
19050a96aa3bSJed Brown     sc_array_destroy(cone_sizes);
19060a96aa3bSJed Brown     sc_array_destroy(cones);
19070a96aa3bSJed Brown     sc_array_destroy(cone_orientations);
19080a96aa3bSJed Brown     sc_array_destroy(coords);
19090a96aa3bSJed Brown     sc_array_destroy(children);
19100a96aa3bSJed Brown     sc_array_destroy(parents);
19110a96aa3bSJed Brown     sc_array_destroy(childids);
19120a96aa3bSJed Brown     sc_array_destroy(leaves);
19130a96aa3bSJed Brown     sc_array_destroy(remotes);
19140a96aa3bSJed Brown   }
19153ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
19160a96aa3bSJed Brown }
19170a96aa3bSJed Brown 
19180a96aa3bSJed Brown   #define DMReferenceTreeGetChildSymmetry_pforest _append_pforest(DMReferenceTreeGetChildSymmetry)
DMReferenceTreeGetChildSymmetry_pforest(DM dm,PetscInt parent,PetscInt parentOrientA,PetscInt childOrientA,PetscInt childA,PetscInt parentOrientB,PetscInt * childOrientB,PetscInt * childB)1919d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMReferenceTreeGetChildSymmetry_pforest(DM dm, PetscInt parent, PetscInt parentOrientA, PetscInt childOrientA, PetscInt childA, PetscInt parentOrientB, PetscInt *childOrientB, PetscInt *childB)
1920d71ae5a4SJacob Faibussowitsch {
19210a96aa3bSJed Brown   PetscInt coneSize, dStart, dEnd, vStart, vEnd, dim, ABswap, oAvert, oBvert, ABswapVert;
19220a96aa3bSJed Brown 
19230a96aa3bSJed Brown   PetscFunctionBegin;
19240a96aa3bSJed Brown   if (parentOrientA == parentOrientB) {
19250a96aa3bSJed Brown     if (childOrientB) *childOrientB = childOrientA;
19260a96aa3bSJed Brown     if (childB) *childB = childA;
19273ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
19280a96aa3bSJed Brown   }
19299566063dSJacob Faibussowitsch   PetscCall(DMPlexGetDepthStratum(dm, 0, &vStart, &vEnd));
19306aad120cSJose E. Roman   if (childA >= vStart && childA < vEnd) { /* vertices (always in the middle) are invariant under rotation */
19310a96aa3bSJed Brown     if (childOrientB) *childOrientB = 0;
19320a96aa3bSJed Brown     if (childB) *childB = childA;
19333ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
19340a96aa3bSJed Brown   }
19350a96aa3bSJed Brown   for (dim = 0; dim < 3; dim++) {
19369566063dSJacob Faibussowitsch     PetscCall(DMPlexGetDepthStratum(dm, dim, &dStart, &dEnd));
19370a96aa3bSJed Brown     if (parent >= dStart && parent <= dEnd) break;
19380a96aa3bSJed Brown   }
193963a3b9bcSJacob Faibussowitsch   PetscCheck(dim <= 2, PETSC_COMM_SELF, PETSC_ERR_SUP, "Cannot perform child symmetry for %" PetscInt_FMT "-cells", dim);
194028b400f6SJacob Faibussowitsch   PetscCheck(dim, PETSC_COMM_SELF, PETSC_ERR_PLIB, "A vertex has no children");
19410a96aa3bSJed Brown   if (childA < dStart || childA >= dEnd) { /* a 1-cell in a 2-cell */
19420a96aa3bSJed Brown     /* this is a lower-dimensional child: bootstrap */
19430a96aa3bSJed Brown     PetscInt        size, i, sA = -1, sB, sOrientB, sConeSize;
19440a96aa3bSJed Brown     const PetscInt *supp, *coneA, *coneB, *oA, *oB;
19450a96aa3bSJed Brown 
19469566063dSJacob Faibussowitsch     PetscCall(DMPlexGetSupportSize(dm, childA, &size));
19479566063dSJacob Faibussowitsch     PetscCall(DMPlexGetSupport(dm, childA, &supp));
19480a96aa3bSJed Brown 
19490a96aa3bSJed Brown     /* find a point sA in supp(childA) that has the same parent */
19500a96aa3bSJed Brown     for (i = 0; i < size; i++) {
19510a96aa3bSJed Brown       PetscInt sParent;
19520a96aa3bSJed Brown 
19530a96aa3bSJed Brown       sA = supp[i];
19540a96aa3bSJed Brown       if (sA == parent) continue;
19559566063dSJacob Faibussowitsch       PetscCall(DMPlexGetTreeParent(dm, sA, &sParent, NULL));
19560a96aa3bSJed Brown       if (sParent == parent) break;
19570a96aa3bSJed Brown     }
195808401ef6SPierre Jolivet     PetscCheck(i != size, PETSC_COMM_SELF, PETSC_ERR_PLIB, "could not find support in children");
19590a96aa3bSJed Brown     /* find out which point sB is in an equivalent position to sA under
19600a96aa3bSJed Brown      * parentOrientB */
19619566063dSJacob Faibussowitsch     PetscCall(DMReferenceTreeGetChildSymmetry_pforest(dm, parent, parentOrientA, 0, sA, parentOrientB, &sOrientB, &sB));
19629566063dSJacob Faibussowitsch     PetscCall(DMPlexGetConeSize(dm, sA, &sConeSize));
19639566063dSJacob Faibussowitsch     PetscCall(DMPlexGetCone(dm, sA, &coneA));
19649566063dSJacob Faibussowitsch     PetscCall(DMPlexGetCone(dm, sB, &coneB));
19659566063dSJacob Faibussowitsch     PetscCall(DMPlexGetConeOrientation(dm, sA, &oA));
19669566063dSJacob Faibussowitsch     PetscCall(DMPlexGetConeOrientation(dm, sB, &oB));
19670a96aa3bSJed Brown     /* step through the cone of sA in natural order */
19680a96aa3bSJed Brown     for (i = 0; i < sConeSize; i++) {
19690a96aa3bSJed Brown       if (coneA[i] == childA) {
19700a96aa3bSJed Brown         /* if childA is at position i in coneA,
19710a96aa3bSJed Brown          * then we want the point that is at sOrientB*i in coneB */
19720a96aa3bSJed Brown         PetscInt j = (sOrientB >= 0) ? ((sOrientB + i) % sConeSize) : ((sConeSize - (sOrientB + 1) - i) % sConeSize);
19730a96aa3bSJed Brown         if (childB) *childB = coneB[j];
19740a96aa3bSJed Brown         if (childOrientB) {
19750a96aa3bSJed Brown           DMPolytopeType ct;
19760a96aa3bSJed Brown           PetscInt       oBtrue;
19770a96aa3bSJed Brown 
19789566063dSJacob Faibussowitsch           PetscCall(DMPlexGetConeSize(dm, childA, &coneSize));
19790a96aa3bSJed Brown           /* compose sOrientB and oB[j] */
19801dca8a05SBarry Smith           PetscCheck(coneSize == 0 || coneSize == 2, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Expected a vertex or an edge");
19810a96aa3bSJed Brown           ct = coneSize ? DM_POLYTOPE_SEGMENT : DM_POLYTOPE_POINT;
19820a96aa3bSJed Brown           /* we may have to flip an edge */
19830a96aa3bSJed Brown           oBtrue        = (sOrientB >= 0) ? oB[j] : DMPolytopeTypeComposeOrientationInv(ct, -1, oB[j]);
19840a96aa3bSJed Brown           oBtrue        = DMPolytopeConvertNewOrientation_Internal(ct, oBtrue);
19850a96aa3bSJed Brown           ABswap        = DihedralSwap(coneSize, DMPolytopeConvertNewOrientation_Internal(ct, oA[i]), oBtrue);
19860a96aa3bSJed Brown           *childOrientB = DihedralCompose(coneSize, childOrientA, ABswap);
19870a96aa3bSJed Brown         }
19880a96aa3bSJed Brown         break;
19890a96aa3bSJed Brown       }
19900a96aa3bSJed Brown     }
199108401ef6SPierre Jolivet     PetscCheck(i != sConeSize, PETSC_COMM_SELF, PETSC_ERR_PLIB, "support cone mismatch");
19923ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
19930a96aa3bSJed Brown   }
19940a96aa3bSJed Brown   /* get the cone size and symmetry swap */
19959566063dSJacob Faibussowitsch   PetscCall(DMPlexGetConeSize(dm, parent, &coneSize));
19960a96aa3bSJed Brown   ABswap = DihedralSwap(coneSize, parentOrientA, parentOrientB);
19970a96aa3bSJed Brown   if (dim == 2) {
19980a96aa3bSJed Brown     /* orientations refer to cones: we want them to refer to vertices:
19990a96aa3bSJed Brown      * if it's a rotation, they are the same, but if the order is reversed, a
20000a96aa3bSJed Brown      * permutation that puts side i first does *not* put vertex i first */
20010a96aa3bSJed Brown     oAvert     = (parentOrientA >= 0) ? parentOrientA : -((-parentOrientA % coneSize) + 1);
20020a96aa3bSJed Brown     oBvert     = (parentOrientB >= 0) ? parentOrientB : -((-parentOrientB % coneSize) + 1);
20030a96aa3bSJed Brown     ABswapVert = DihedralSwap(coneSize, oAvert, oBvert);
20040a96aa3bSJed Brown   } else {
20050a96aa3bSJed Brown     oAvert     = parentOrientA;
20060a96aa3bSJed Brown     oBvert     = parentOrientB;
20070a96aa3bSJed Brown     ABswapVert = ABswap;
20080a96aa3bSJed Brown   }
20090a96aa3bSJed Brown   if (childB) {
20100a96aa3bSJed Brown     /* assume that each child corresponds to a vertex, in the same order */
20110a96aa3bSJed Brown     PetscInt        p, posA = -1, numChildren, i;
20120a96aa3bSJed Brown     const PetscInt *children;
20130a96aa3bSJed Brown 
20140a96aa3bSJed Brown     /* count which position the child is in */
20159566063dSJacob Faibussowitsch     PetscCall(DMPlexGetTreeChildren(dm, parent, &numChildren, &children));
20160a96aa3bSJed Brown     for (i = 0; i < numChildren; i++) {
20170a96aa3bSJed Brown       p = children[i];
20180a96aa3bSJed Brown       if (p == childA) {
20190a96aa3bSJed Brown         if (dim == 1) {
20200a96aa3bSJed Brown           posA = i;
20210a96aa3bSJed Brown         } else { /* 2D Morton to rotation */
20220a96aa3bSJed Brown           posA = (i & 2) ? (i ^ 1) : i;
20230a96aa3bSJed Brown         }
20240a96aa3bSJed Brown         break;
20250a96aa3bSJed Brown       }
20260a96aa3bSJed Brown     }
20270a96aa3bSJed Brown     if (posA >= coneSize) {
20280a96aa3bSJed Brown       SETERRQ(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Could not find childA in children of parent");
20290a96aa3bSJed Brown     } else {
20300a96aa3bSJed Brown       /* figure out position B by applying ABswapVert */
20310a96aa3bSJed Brown       PetscInt posB, childIdB;
20320a96aa3bSJed Brown 
20330a96aa3bSJed Brown       posB = (ABswapVert >= 0) ? ((ABswapVert + posA) % coneSize) : ((coneSize - (ABswapVert + 1) - posA) % coneSize);
20340a96aa3bSJed Brown       if (dim == 1) {
20350a96aa3bSJed Brown         childIdB = posB;
20360a96aa3bSJed Brown       } else { /* 2D rotation to Morton */
20370a96aa3bSJed Brown         childIdB = (posB & 2) ? (posB ^ 1) : posB;
20380a96aa3bSJed Brown       }
20390a96aa3bSJed Brown       if (childB) *childB = children[childIdB];
20400a96aa3bSJed Brown     }
20410a96aa3bSJed Brown   }
20420a96aa3bSJed Brown   if (childOrientB) *childOrientB = DihedralCompose(coneSize, childOrientA, ABswap);
20433ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
20440a96aa3bSJed Brown }
20450a96aa3bSJed Brown 
20460a96aa3bSJed Brown   #define DMCreateReferenceTree_pforest _append_pforest(DMCreateReferenceTree)
DMCreateReferenceTree_pforest(MPI_Comm comm,DM * dm)2047d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMCreateReferenceTree_pforest(MPI_Comm comm, DM *dm)
2048d71ae5a4SJacob Faibussowitsch {
20490a96aa3bSJed Brown   p4est_connectivity_t *refcube;
20500a96aa3bSJed Brown   p4est_t              *root, *refined;
20510a96aa3bSJed Brown   DM                    dmRoot, dmRefined;
20520a96aa3bSJed Brown   DM_Plex              *mesh;
20530a96aa3bSJed Brown   PetscMPIInt           rank;
205466c0a4b5SToby Isaac   #if defined(PETSC_HAVE_MPIUNI)
205566c0a4b5SToby Isaac   sc_MPI_Comm comm_self = sc_MPI_COMM_SELF;
205666c0a4b5SToby Isaac   #else
205766c0a4b5SToby Isaac   MPI_Comm comm_self = PETSC_COMM_SELF;
205866c0a4b5SToby Isaac   #endif
20590a96aa3bSJed Brown 
20600a96aa3bSJed Brown   PetscFunctionBegin;
2061792fecdfSBarry Smith   PetscCallP4estReturn(refcube, p4est_connectivity_new_byname, ("unit"));
20620a96aa3bSJed Brown   { /* [-1,1]^d geometry */
20630a96aa3bSJed Brown     PetscInt i, j;
20640a96aa3bSJed Brown 
20650a96aa3bSJed Brown     for (i = 0; i < P4EST_CHILDREN; i++) {
20660a96aa3bSJed Brown       for (j = 0; j < 3; j++) {
20670a96aa3bSJed Brown         refcube->vertices[3 * i + j] *= 2.;
20680a96aa3bSJed Brown         refcube->vertices[3 * i + j] -= 1.;
20690a96aa3bSJed Brown       }
20700a96aa3bSJed Brown     }
20710a96aa3bSJed Brown   }
2072792fecdfSBarry Smith   PetscCallP4estReturn(root, p4est_new, (comm_self, refcube, 0, NULL, NULL));
2073792fecdfSBarry Smith   PetscCallP4estReturn(refined, p4est_new_ext, (comm_self, refcube, 0, 1, 1, 0, NULL, NULL));
20749566063dSJacob Faibussowitsch   PetscCall(P4estToPlex_Local(root, &dmRoot));
20759566063dSJacob Faibussowitsch   PetscCall(P4estToPlex_Local(refined, &dmRefined));
20760a96aa3bSJed Brown   {
20770a96aa3bSJed Brown   #if !defined(P4_TO_P8)
20780a96aa3bSJed Brown     PetscInt nPoints   = 25;
20799371c9d4SSatish Balay     PetscInt perm[25]  = {0, 1, 2, 3, 4, 12, 8, 14, 6, 9, 15, 5, 13, 10, 7, 11, 16, 22, 20, 24, 17, 21, 18, 23, 19};
20809371c9d4SSatish Balay     PetscInt ident[25] = {0, 0, 0, 0, 1, 1, 2, 2, 3, 3, 4, 4, 0, 0, 0, 0, 5, 6, 7, 8, 1, 2, 3, 4, 0};
20810a96aa3bSJed Brown   #else
20820a96aa3bSJed Brown     PetscInt nPoints    = 125;
20839371c9d4SSatish Balay     PetscInt perm[125]  = {0,  1,  2,  3,  4,  5,  6,  7,  8,  32, 16, 36, 24, 40, 12, 17,  37,  25,  41,  9,   33,  20,  26, 42,  13,  21,  27,  43,  10,  34,  18,  38,  28,  14,  19,  39,  29,  11,  35,  22,  30, 15,
20849371c9d4SSatish Balay                            23, 31, 44, 84, 76, 92, 52, 86, 68, 94, 60, 78, 70, 96, 45, 85,  77,  93,  54,  72,  62,  74,  46, 80,  53,  87,  69,  95,  64,  82,  47,  81,  55,  73,  66,  48,  88,  56,  90,  61,  79, 71,
20859371c9d4SSatish Balay                            97, 49, 89, 58, 63, 75, 50, 57, 91, 65, 83, 51, 59, 67, 98, 106, 110, 122, 114, 120, 118, 124, 99, 111, 115, 119, 100, 107, 116, 121, 101, 117, 102, 108, 112, 123, 103, 113, 104, 109, 105};
20869371c9d4SSatish Balay     PetscInt ident[125] = {0,  0,  0,  0,  0,  0, 0, 0, 1, 1, 1, 1, 2, 2, 2, 2, 3, 3, 3, 3, 4, 4, 4, 4, 5, 5, 5, 5, 6, 6, 6, 6, 0, 0, 0, 0,  0,  0,  0,  0,  0,  0,  0,  0, 7, 7, 8,  8,  9,  9,  10, 10, 11, 11, 12, 12, 13, 13, 14, 14, 15, 15, 16,
20879371c9d4SSatish Balay                            16, 17, 17, 18, 18, 1, 1, 1, 1, 2, 2, 2, 2, 3, 3, 3, 3, 4, 4, 4, 4, 5, 5, 5, 5, 6, 6, 6, 6, 0, 0, 0, 0, 0, 0, 19, 20, 21, 22, 23, 24, 25, 26, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 1,  2,  3,  4,  5,  6,  0};
20880a96aa3bSJed Brown 
20890a96aa3bSJed Brown   #endif
20900a96aa3bSJed Brown     IS permIS;
20910a96aa3bSJed Brown     DM dmPerm;
20920a96aa3bSJed Brown 
20939566063dSJacob Faibussowitsch     PetscCall(ISCreateGeneral(PETSC_COMM_SELF, nPoints, perm, PETSC_USE_POINTER, &permIS));
20949566063dSJacob Faibussowitsch     PetscCall(DMPlexPermute(dmRefined, permIS, &dmPerm));
20950a96aa3bSJed Brown     if (dmPerm) {
20969566063dSJacob Faibussowitsch       PetscCall(DMDestroy(&dmRefined));
20970a96aa3bSJed Brown       dmRefined = dmPerm;
20980a96aa3bSJed Brown     }
20999566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&permIS));
21000a96aa3bSJed Brown     {
21010a96aa3bSJed Brown       PetscInt p;
21029566063dSJacob Faibussowitsch       PetscCall(DMCreateLabel(dmRoot, "identity"));
21039566063dSJacob Faibussowitsch       PetscCall(DMCreateLabel(dmRefined, "identity"));
210448a46eb9SPierre Jolivet       for (p = 0; p < P4EST_INSUL; p++) PetscCall(DMSetLabelValue(dmRoot, "identity", p, p));
210548a46eb9SPierre Jolivet       for (p = 0; p < nPoints; p++) PetscCall(DMSetLabelValue(dmRefined, "identity", p, ident[p]));
21060a96aa3bSJed Brown     }
21070a96aa3bSJed Brown   }
21089566063dSJacob Faibussowitsch   PetscCall(DMPlexCreateReferenceTree_Union(dmRoot, dmRefined, "identity", dm));
21090a96aa3bSJed Brown   mesh                   = (DM_Plex *)(*dm)->data;
21100a96aa3bSJed Brown   mesh->getchildsymmetry = DMReferenceTreeGetChildSymmetry_pforest;
21119566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(comm, &rank));
21120a96aa3bSJed Brown   if (rank == 0) {
21139566063dSJacob Faibussowitsch     PetscCall(DMViewFromOptions(dmRoot, NULL, "-dm_p4est_ref_root_view"));
21149566063dSJacob Faibussowitsch     PetscCall(DMViewFromOptions(dmRefined, NULL, "-dm_p4est_ref_refined_view"));
21159566063dSJacob Faibussowitsch     PetscCall(DMViewFromOptions(dmRefined, NULL, "-dm_p4est_ref_tree_view"));
21160a96aa3bSJed Brown   }
21179566063dSJacob Faibussowitsch   PetscCall(DMDestroy(&dmRefined));
21189566063dSJacob Faibussowitsch   PetscCall(DMDestroy(&dmRoot));
2119792fecdfSBarry Smith   PetscCallP4est(p4est_destroy, (refined));
2120792fecdfSBarry Smith   PetscCallP4est(p4est_destroy, (root));
2121792fecdfSBarry Smith   PetscCallP4est(p4est_connectivity_destroy, (refcube));
21223ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
21230a96aa3bSJed Brown }
21240a96aa3bSJed Brown 
DMShareDiscretization(DM dmA,DM dmB)2125d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMShareDiscretization(DM dmA, DM dmB)
2126d71ae5a4SJacob Faibussowitsch {
21270a96aa3bSJed Brown   void     *ctx;
21280a96aa3bSJed Brown   PetscInt  num;
21290a96aa3bSJed Brown   PetscReal val;
21300a96aa3bSJed Brown 
21310a96aa3bSJed Brown   PetscFunctionBegin;
21329566063dSJacob Faibussowitsch   PetscCall(DMGetApplicationContext(dmA, &ctx));
21339566063dSJacob Faibussowitsch   PetscCall(DMSetApplicationContext(dmB, ctx));
21349566063dSJacob Faibussowitsch   PetscCall(DMCopyDisc(dmA, dmB));
21359566063dSJacob Faibussowitsch   PetscCall(DMGetOutputSequenceNumber(dmA, &num, &val));
21369566063dSJacob Faibussowitsch   PetscCall(DMSetOutputSequenceNumber(dmB, num, val));
21370a96aa3bSJed Brown   if (dmB->localSection != dmA->localSection || dmB->globalSection != dmA->globalSection) {
21389566063dSJacob Faibussowitsch     PetscCall(DMClearLocalVectors(dmB));
21399566063dSJacob Faibussowitsch     PetscCall(PetscObjectReference((PetscObject)dmA->localSection));
2140f4f49eeaSPierre Jolivet     PetscCall(PetscSectionDestroy(&dmB->localSection));
21410a96aa3bSJed Brown     dmB->localSection = dmA->localSection;
21429566063dSJacob Faibussowitsch     PetscCall(DMClearGlobalVectors(dmB));
21439566063dSJacob Faibussowitsch     PetscCall(PetscObjectReference((PetscObject)dmA->globalSection));
2144f4f49eeaSPierre Jolivet     PetscCall(PetscSectionDestroy(&dmB->globalSection));
21450a96aa3bSJed Brown     dmB->globalSection = dmA->globalSection;
21469566063dSJacob Faibussowitsch     PetscCall(PetscObjectReference((PetscObject)dmA->defaultConstraint.section));
2147f4f49eeaSPierre Jolivet     PetscCall(PetscSectionDestroy(&dmB->defaultConstraint.section));
21483b8ba7d1SJed Brown     dmB->defaultConstraint.section = dmA->defaultConstraint.section;
21499566063dSJacob Faibussowitsch     PetscCall(PetscObjectReference((PetscObject)dmA->defaultConstraint.mat));
2150f4f49eeaSPierre Jolivet     PetscCall(MatDestroy(&dmB->defaultConstraint.mat));
21513b8ba7d1SJed Brown     dmB->defaultConstraint.mat = dmA->defaultConstraint.mat;
21529566063dSJacob Faibussowitsch     if (dmA->map) PetscCall(PetscLayoutReference(dmA->map, &dmB->map));
21530a96aa3bSJed Brown   }
21540a96aa3bSJed Brown   if (dmB->sectionSF != dmA->sectionSF) {
21559566063dSJacob Faibussowitsch     PetscCall(PetscObjectReference((PetscObject)dmA->sectionSF));
21569566063dSJacob Faibussowitsch     PetscCall(PetscSFDestroy(&dmB->sectionSF));
21570a96aa3bSJed Brown     dmB->sectionSF = dmA->sectionSF;
21580a96aa3bSJed Brown   }
21593ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
21600a96aa3bSJed Brown }
21610a96aa3bSJed Brown 
21620a96aa3bSJed Brown /* Get an SF that broadcasts a coarse-cell covering of the local fine cells */
DMPforestGetCellCoveringSF(MPI_Comm comm,p4est_t * p4estC,p4est_t * p4estF,PetscInt cStart,PetscInt cEnd,PetscSF * coveringSF)2163d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPforestGetCellCoveringSF(MPI_Comm comm, p4est_t *p4estC, p4est_t *p4estF, PetscInt cStart, PetscInt cEnd, PetscSF *coveringSF)
2164d71ae5a4SJacob Faibussowitsch {
21650a96aa3bSJed Brown   PetscInt     startF, endF, startC, endC, p, nLeaves;
21660a96aa3bSJed Brown   PetscSFNode *leaves;
21670a96aa3bSJed Brown   PetscSF      sf;
21680a96aa3bSJed Brown   PetscInt    *recv, *send;
21690a96aa3bSJed Brown   PetscMPIInt  tag;
21700a96aa3bSJed Brown   MPI_Request *recvReqs, *sendReqs;
21710a96aa3bSJed Brown   PetscSection section;
21720a96aa3bSJed Brown 
21730a96aa3bSJed Brown   PetscFunctionBegin;
21749566063dSJacob Faibussowitsch   PetscCall(DMPforestComputeOverlappingRanks(p4estC->mpisize, p4estC->mpirank, p4estF, p4estC, &startC, &endC));
21759566063dSJacob Faibussowitsch   PetscCall(PetscMalloc2(2 * (endC - startC), &recv, endC - startC, &recvReqs));
21769566063dSJacob Faibussowitsch   PetscCall(PetscCommGetNewTag(comm, &tag));
21770a96aa3bSJed Brown   for (p = startC; p < endC; p++) {
21780a96aa3bSJed Brown     recvReqs[p - startC] = MPI_REQUEST_NULL;                                        /* just in case we don't initiate a receive */
21790a96aa3bSJed Brown     if (p4estC->global_first_quadrant[p] == p4estC->global_first_quadrant[p + 1]) { /* empty coarse partition */
21800a96aa3bSJed Brown       recv[2 * (p - startC)]     = 0;
21810a96aa3bSJed Brown       recv[2 * (p - startC) + 1] = 0;
21820a96aa3bSJed Brown       continue;
21830a96aa3bSJed Brown     }
21840a96aa3bSJed Brown 
21856497c311SBarry Smith     PetscCallMPI(MPIU_Irecv(&recv[2 * (p - startC)], 2, MPIU_INT, p, tag, comm, &recvReqs[p - startC]));
21860a96aa3bSJed Brown   }
21879566063dSJacob Faibussowitsch   PetscCall(DMPforestComputeOverlappingRanks(p4estC->mpisize, p4estC->mpirank, p4estC, p4estF, &startF, &endF));
21889566063dSJacob Faibussowitsch   PetscCall(PetscMalloc2(2 * (endF - startF), &send, endF - startF, &sendReqs));
21890a96aa3bSJed Brown   /* count the quadrants rank will send to each of [startF,endF) */
21900a96aa3bSJed Brown   for (p = startF; p < endF; p++) {
21910a96aa3bSJed Brown     p4est_quadrant_t *myFineStart = &p4estF->global_first_position[p];
21920a96aa3bSJed Brown     p4est_quadrant_t *myFineEnd   = &p4estF->global_first_position[p + 1];
21930a96aa3bSJed Brown     PetscInt          tStart      = (PetscInt)myFineStart->p.which_tree;
21940a96aa3bSJed Brown     PetscInt          tEnd        = (PetscInt)myFineEnd->p.which_tree;
21950a96aa3bSJed Brown     PetscInt          firstCell = -1, lastCell = -1;
21960a96aa3bSJed Brown     p4est_tree_t     *treeStart = &(((p4est_tree_t *)p4estC->trees->array)[tStart]);
21970a96aa3bSJed Brown     p4est_tree_t     *treeEnd   = (size_t)tEnd < p4estC->trees->elem_count ? &(((p4est_tree_t *)p4estC->trees->array)[tEnd]) : NULL;
21980a96aa3bSJed Brown     ssize_t           overlapIndex;
21990a96aa3bSJed Brown 
22000a96aa3bSJed Brown     sendReqs[p - startF] = MPI_REQUEST_NULL; /* just in case we don't initiate a send */
22010a96aa3bSJed Brown     if (p4estF->global_first_quadrant[p] == p4estF->global_first_quadrant[p + 1]) continue;
22020a96aa3bSJed Brown 
22030a96aa3bSJed Brown     /* locate myFineStart in (or before) a cell */
22040a96aa3bSJed Brown     if (treeStart->quadrants.elem_count) {
2205f4f49eeaSPierre Jolivet       PetscCallP4estReturn(overlapIndex, sc_array_bsearch, (&treeStart->quadrants, myFineStart, p4est_quadrant_disjoint));
22060a96aa3bSJed Brown       if (overlapIndex < 0) {
22070a96aa3bSJed Brown         firstCell = 0;
22080a96aa3bSJed Brown       } else {
22096497c311SBarry Smith         firstCell = (PetscInt)(treeStart->quadrants_offset + overlapIndex);
22100a96aa3bSJed Brown       }
22110a96aa3bSJed Brown     } else {
22120a96aa3bSJed Brown       firstCell = 0;
22130a96aa3bSJed Brown     }
22140a96aa3bSJed Brown     if (treeEnd && treeEnd->quadrants.elem_count) {
2215f4f49eeaSPierre Jolivet       PetscCallP4estReturn(overlapIndex, sc_array_bsearch, (&treeEnd->quadrants, myFineEnd, p4est_quadrant_disjoint));
22160a96aa3bSJed Brown       if (overlapIndex < 0) { /* all of this local section is overlapped */
22170a96aa3bSJed Brown         lastCell = p4estC->local_num_quadrants;
22180a96aa3bSJed Brown       } else {
22190a96aa3bSJed Brown         p4est_quadrant_t *container = &(((p4est_quadrant_t *)treeEnd->quadrants.array)[overlapIndex]);
22200a96aa3bSJed Brown         p4est_quadrant_t  first_desc;
22210a96aa3bSJed Brown         int               equal;
22220a96aa3bSJed Brown 
2223792fecdfSBarry Smith         PetscCallP4est(p4est_quadrant_first_descendant, (container, &first_desc, P4EST_QMAXLEVEL));
2224792fecdfSBarry Smith         PetscCallP4estReturn(equal, p4est_quadrant_is_equal, (myFineEnd, &first_desc));
22250a96aa3bSJed Brown         if (equal) {
22266497c311SBarry Smith           lastCell = (PetscInt)(treeEnd->quadrants_offset + overlapIndex);
22270a96aa3bSJed Brown         } else {
22286497c311SBarry Smith           lastCell = (PetscInt)(treeEnd->quadrants_offset + overlapIndex + 1);
22290a96aa3bSJed Brown         }
22300a96aa3bSJed Brown       }
22310a96aa3bSJed Brown     } else {
22320a96aa3bSJed Brown       lastCell = p4estC->local_num_quadrants;
22330a96aa3bSJed Brown     }
22340a96aa3bSJed Brown     send[2 * (p - startF)]     = firstCell;
22350a96aa3bSJed Brown     send[2 * (p - startF) + 1] = lastCell - firstCell;
22366497c311SBarry Smith     PetscCallMPI(MPIU_Isend(&send[2 * (p - startF)], 2, MPIU_INT, p, tag, comm, &sendReqs[p - startF]));
22370a96aa3bSJed Brown   }
22389566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Waitall((PetscMPIInt)(endC - startC), recvReqs, MPI_STATUSES_IGNORE));
22399566063dSJacob Faibussowitsch   PetscCall(PetscSectionCreate(PETSC_COMM_SELF, &section));
22409566063dSJacob Faibussowitsch   PetscCall(PetscSectionSetChart(section, startC, endC));
22410a96aa3bSJed Brown   for (p = startC; p < endC; p++) {
22420a96aa3bSJed Brown     PetscInt numCells = recv[2 * (p - startC) + 1];
22439566063dSJacob Faibussowitsch     PetscCall(PetscSectionSetDof(section, p, numCells));
22440a96aa3bSJed Brown   }
22459566063dSJacob Faibussowitsch   PetscCall(PetscSectionSetUp(section));
22469566063dSJacob Faibussowitsch   PetscCall(PetscSectionGetStorageSize(section, &nLeaves));
22479566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(nLeaves, &leaves));
22480a96aa3bSJed Brown   for (p = startC; p < endC; p++) {
22490a96aa3bSJed Brown     PetscInt firstCell = recv[2 * (p - startC)];
22500a96aa3bSJed Brown     PetscInt numCells  = recv[2 * (p - startC) + 1];
22510a96aa3bSJed Brown     PetscInt off, i;
22520a96aa3bSJed Brown 
22539566063dSJacob Faibussowitsch     PetscCall(PetscSectionGetOffset(section, p, &off));
22540a96aa3bSJed Brown     for (i = 0; i < numCells; i++) {
22550a96aa3bSJed Brown       leaves[off + i].rank  = p;
22560a96aa3bSJed Brown       leaves[off + i].index = firstCell + i;
22570a96aa3bSJed Brown     }
22580a96aa3bSJed Brown   }
22599566063dSJacob Faibussowitsch   PetscCall(PetscSFCreate(comm, &sf));
22609566063dSJacob Faibussowitsch   PetscCall(PetscSFSetGraph(sf, cEnd - cStart, nLeaves, NULL, PETSC_OWN_POINTER, leaves, PETSC_OWN_POINTER));
22619566063dSJacob Faibussowitsch   PetscCall(PetscSectionDestroy(&section));
22629566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Waitall((PetscMPIInt)(endF - startF), sendReqs, MPI_STATUSES_IGNORE));
22639566063dSJacob Faibussowitsch   PetscCall(PetscFree2(send, sendReqs));
22649566063dSJacob Faibussowitsch   PetscCall(PetscFree2(recv, recvReqs));
22650a96aa3bSJed Brown   *coveringSF = sf;
22663ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
22670a96aa3bSJed Brown }
22680a96aa3bSJed Brown 
22690a96aa3bSJed Brown /* closure points for locally-owned cells */
DMPforestGetCellSFNodes(DM dm,PetscInt numClosureIndices,PetscInt * numClosurePoints,PetscSFNode ** closurePoints,PetscBool redirect)2270d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPforestGetCellSFNodes(DM dm, PetscInt numClosureIndices, PetscInt *numClosurePoints, PetscSFNode **closurePoints, PetscBool redirect)
2271d71ae5a4SJacob Faibussowitsch {
22720a96aa3bSJed Brown   PetscInt           cStart, cEnd;
22730a96aa3bSJed Brown   PetscInt           count, c;
22740a96aa3bSJed Brown   PetscMPIInt        rank;
22750a96aa3bSJed Brown   PetscInt           closureSize = -1;
22760a96aa3bSJed Brown   PetscInt          *closure     = NULL;
22770a96aa3bSJed Brown   PetscSF            pointSF;
22780a96aa3bSJed Brown   PetscInt           nleaves, nroots;
22790a96aa3bSJed Brown   const PetscInt    *ilocal;
22800a96aa3bSJed Brown   const PetscSFNode *iremote;
22810a96aa3bSJed Brown   DM                 plex;
22820a96aa3bSJed Brown   DM_Forest         *forest;
22830a96aa3bSJed Brown   DM_Forest_pforest *pforest;
22840a96aa3bSJed Brown 
22850a96aa3bSJed Brown   PetscFunctionBegin;
22860a96aa3bSJed Brown   forest  = (DM_Forest *)dm->data;
22870a96aa3bSJed Brown   pforest = (DM_Forest_pforest *)forest->data;
22880a96aa3bSJed Brown   cStart  = pforest->cLocalStart;
22890a96aa3bSJed Brown   cEnd    = pforest->cLocalEnd;
22909566063dSJacob Faibussowitsch   PetscCall(DMPforestGetPlex(dm, &plex));
22919566063dSJacob Faibussowitsch   PetscCall(DMGetPointSF(dm, &pointSF));
22929566063dSJacob Faibussowitsch   PetscCall(PetscSFGetGraph(pointSF, &nroots, &nleaves, &ilocal, &iremote));
22930a96aa3bSJed Brown   nleaves           = PetscMax(0, nleaves);
22940a96aa3bSJed Brown   nroots            = PetscMax(0, nroots);
22950a96aa3bSJed Brown   *numClosurePoints = numClosureIndices * (cEnd - cStart);
22969566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(*numClosurePoints, closurePoints));
22979566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)dm), &rank));
22980a96aa3bSJed Brown   for (c = cStart, count = 0; c < cEnd; c++) {
22990a96aa3bSJed Brown     PetscInt i;
23009566063dSJacob Faibussowitsch     PetscCall(DMPlexGetTransitiveClosure(plex, c, PETSC_TRUE, &closureSize, &closure));
23010a96aa3bSJed Brown 
23020a96aa3bSJed Brown     for (i = 0; i < numClosureIndices; i++, count++) {
23030a96aa3bSJed Brown       PetscInt p   = closure[2 * i];
23040a96aa3bSJed Brown       PetscInt loc = -1;
23050a96aa3bSJed Brown 
23069566063dSJacob Faibussowitsch       PetscCall(PetscFindInt(p, nleaves, ilocal, &loc));
23070a96aa3bSJed Brown       if (redirect && loc >= 0) {
23080a96aa3bSJed Brown         (*closurePoints)[count].rank  = iremote[loc].rank;
23090a96aa3bSJed Brown         (*closurePoints)[count].index = iremote[loc].index;
23100a96aa3bSJed Brown       } else {
23110a96aa3bSJed Brown         (*closurePoints)[count].rank  = rank;
23120a96aa3bSJed Brown         (*closurePoints)[count].index = p;
23130a96aa3bSJed Brown       }
23140a96aa3bSJed Brown     }
23159566063dSJacob Faibussowitsch     PetscCall(DMPlexRestoreTransitiveClosure(plex, c, PETSC_TRUE, &closureSize, &closure));
23160a96aa3bSJed Brown   }
23173ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
23180a96aa3bSJed Brown }
23190a96aa3bSJed Brown 
DMPforestMaxSFNode(void * a,void * b,PetscMPIInt * len,MPI_Datatype * type)2320d71ae5a4SJacob Faibussowitsch static void MPIAPI DMPforestMaxSFNode(void *a, void *b, PetscMPIInt *len, MPI_Datatype *type)
2321d71ae5a4SJacob Faibussowitsch {
23220a96aa3bSJed Brown   PetscMPIInt i;
23230a96aa3bSJed Brown 
23240a96aa3bSJed Brown   for (i = 0; i < *len; i++) {
23250a96aa3bSJed Brown     PetscSFNode *A = (PetscSFNode *)a;
23260a96aa3bSJed Brown     PetscSFNode *B = (PetscSFNode *)b;
23270a96aa3bSJed Brown 
23280a96aa3bSJed Brown     if (B->rank < 0) *B = *A;
23290a96aa3bSJed Brown   }
23300a96aa3bSJed Brown }
23310a96aa3bSJed Brown 
DMPforestGetTransferSF_Point(DM coarse,DM fine,PetscSF * sf,PetscBool transferIdent,PetscInt * childIds[])2332d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPforestGetTransferSF_Point(DM coarse, DM fine, PetscSF *sf, PetscBool transferIdent, PetscInt *childIds[])
2333d71ae5a4SJacob Faibussowitsch {
23340a96aa3bSJed Brown   MPI_Comm           comm;
23350a96aa3bSJed Brown   PetscMPIInt        rank, size;
23360a96aa3bSJed Brown   DM_Forest_pforest *pforestC, *pforestF;
23370a96aa3bSJed Brown   p4est_t           *p4estC, *p4estF;
23380a96aa3bSJed Brown   PetscInt           numClosureIndices;
23390a96aa3bSJed Brown   PetscInt           numClosurePointsC, numClosurePointsF;
23400a96aa3bSJed Brown   PetscSFNode       *closurePointsC, *closurePointsF;
23410a96aa3bSJed Brown   p4est_quadrant_t  *coverQuads = NULL;
23420a96aa3bSJed Brown   p4est_quadrant_t **treeQuads;
23430a96aa3bSJed Brown   PetscInt          *treeQuadCounts;
23440a96aa3bSJed Brown   MPI_Datatype       nodeType;
23450a96aa3bSJed Brown   MPI_Datatype       nodeClosureType;
23460a96aa3bSJed Brown   MPI_Op             sfNodeReduce;
23470a96aa3bSJed Brown   p4est_topidx_t     fltF, lltF, t;
23480a96aa3bSJed Brown   DM                 plexC, plexF;
23490a96aa3bSJed Brown   PetscInt           pStartF, pEndF, pStartC, pEndC;
23500a96aa3bSJed Brown   PetscBool          saveInCoarse = PETSC_FALSE;
23510a96aa3bSJed Brown   PetscBool          saveInFine   = PETSC_FALSE;
23520a96aa3bSJed Brown   PetscBool          formCids     = (childIds != NULL) ? PETSC_TRUE : PETSC_FALSE;
23530a96aa3bSJed Brown   PetscInt          *cids         = NULL;
23540a96aa3bSJed Brown 
23550a96aa3bSJed Brown   PetscFunctionBegin;
23560a96aa3bSJed Brown   pforestC = (DM_Forest_pforest *)((DM_Forest *)coarse->data)->data;
23570a96aa3bSJed Brown   pforestF = (DM_Forest_pforest *)((DM_Forest *)fine->data)->data;
23580a96aa3bSJed Brown   p4estC   = pforestC->forest;
23590a96aa3bSJed Brown   p4estF   = pforestF->forest;
236008401ef6SPierre Jolivet   PetscCheck(pforestC->topo == pforestF->topo, PetscObjectComm((PetscObject)coarse), PETSC_ERR_ARG_INCOMP, "DM's must have the same base DM");
23610a96aa3bSJed Brown   comm = PetscObjectComm((PetscObject)coarse);
23629566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(comm, &rank));
23639566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
23649566063dSJacob Faibussowitsch   PetscCall(DMPforestGetPlex(fine, &plexF));
23659566063dSJacob Faibussowitsch   PetscCall(DMPlexGetChart(plexF, &pStartF, &pEndF));
23669566063dSJacob Faibussowitsch   PetscCall(DMPforestGetPlex(coarse, &plexC));
23679566063dSJacob Faibussowitsch   PetscCall(DMPlexGetChart(plexC, &pStartC, &pEndC));
23680a96aa3bSJed Brown   { /* check if the results have been cached */
23690a96aa3bSJed Brown     DM adaptCoarse, adaptFine;
23700a96aa3bSJed Brown 
23719566063dSJacob Faibussowitsch     PetscCall(DMForestGetAdaptivityForest(coarse, &adaptCoarse));
23729566063dSJacob Faibussowitsch     PetscCall(DMForestGetAdaptivityForest(fine, &adaptFine));
23730a96aa3bSJed Brown     if (adaptCoarse && adaptCoarse->data == fine->data) { /* coarse is adapted from fine */
23740a96aa3bSJed Brown       if (pforestC->pointSelfToAdaptSF) {
2375f4f49eeaSPierre Jolivet         PetscCall(PetscObjectReference((PetscObject)pforestC->pointSelfToAdaptSF));
23760a96aa3bSJed Brown         *sf = pforestC->pointSelfToAdaptSF;
23770a96aa3bSJed Brown         if (childIds) {
23789566063dSJacob Faibussowitsch           PetscCall(PetscMalloc1(pEndF - pStartF, &cids));
23799566063dSJacob Faibussowitsch           PetscCall(PetscArraycpy(cids, pforestC->pointSelfToAdaptCids, pEndF - pStartF));
23800a96aa3bSJed Brown           *childIds = cids;
23810a96aa3bSJed Brown         }
23823ba16761SJacob Faibussowitsch         PetscFunctionReturn(PETSC_SUCCESS);
23830a96aa3bSJed Brown       } else {
23840a96aa3bSJed Brown         saveInCoarse = PETSC_TRUE;
23850a96aa3bSJed Brown         formCids     = PETSC_TRUE;
23860a96aa3bSJed Brown       }
23870a96aa3bSJed Brown     } else if (adaptFine && adaptFine->data == coarse->data) { /* fine is adapted from coarse */
23880a96aa3bSJed Brown       if (pforestF->pointAdaptToSelfSF) {
2389f4f49eeaSPierre Jolivet         PetscCall(PetscObjectReference((PetscObject)pforestF->pointAdaptToSelfSF));
23900a96aa3bSJed Brown         *sf = pforestF->pointAdaptToSelfSF;
23910a96aa3bSJed Brown         if (childIds) {
23929566063dSJacob Faibussowitsch           PetscCall(PetscMalloc1(pEndF - pStartF, &cids));
23939566063dSJacob Faibussowitsch           PetscCall(PetscArraycpy(cids, pforestF->pointAdaptToSelfCids, pEndF - pStartF));
23940a96aa3bSJed Brown           *childIds = cids;
23950a96aa3bSJed Brown         }
23963ba16761SJacob Faibussowitsch         PetscFunctionReturn(PETSC_SUCCESS);
23970a96aa3bSJed Brown       } else {
23980a96aa3bSJed Brown         saveInFine = PETSC_TRUE;
23990a96aa3bSJed Brown         formCids   = PETSC_TRUE;
24000a96aa3bSJed Brown       }
24010a96aa3bSJed Brown     }
24020a96aa3bSJed Brown   }
24030a96aa3bSJed Brown 
24040a96aa3bSJed Brown   /* count the number of closure points that have dofs and create a list */
24050a96aa3bSJed Brown   numClosureIndices = P4EST_INSUL;
24060a96aa3bSJed Brown   /* create the datatype */
24079566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Type_contiguous(2, MPIU_INT, &nodeType));
24089566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Type_commit(&nodeType));
24099566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Op_create(DMPforestMaxSFNode, PETSC_FALSE, &sfNodeReduce));
24109566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Type_contiguous(numClosureIndices * 2, MPIU_INT, &nodeClosureType));
24119566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Type_commit(&nodeClosureType));
24120a96aa3bSJed Brown   /* everything has to go through cells: for each cell, create a list of the sfnodes in its closure */
24130a96aa3bSJed Brown   /* get lists of closure point SF nodes for every cell */
24149566063dSJacob Faibussowitsch   PetscCall(DMPforestGetCellSFNodes(coarse, numClosureIndices, &numClosurePointsC, &closurePointsC, PETSC_TRUE));
24159566063dSJacob Faibussowitsch   PetscCall(DMPforestGetCellSFNodes(fine, numClosureIndices, &numClosurePointsF, &closurePointsF, PETSC_FALSE));
24160a96aa3bSJed Brown   /* create pointers for tree lists */
24170a96aa3bSJed Brown   fltF = p4estF->first_local_tree;
24180a96aa3bSJed Brown   lltF = p4estF->last_local_tree;
24199566063dSJacob Faibussowitsch   PetscCall(PetscCalloc2(lltF + 1 - fltF, &treeQuads, lltF + 1 - fltF, &treeQuadCounts));
24200a96aa3bSJed Brown   /* if the partitions don't match, ship the coarse to cover the fine */
24210a96aa3bSJed Brown   if (size > 1) {
24220a96aa3bSJed Brown     PetscInt p;
24230a96aa3bSJed Brown 
24240a96aa3bSJed Brown     for (p = 0; p < size; p++) {
24250a96aa3bSJed Brown       int equal;
24260a96aa3bSJed Brown 
2427792fecdfSBarry Smith       PetscCallP4estReturn(equal, p4est_quadrant_is_equal_piggy, (&p4estC->global_first_position[p], &p4estF->global_first_position[p]));
24280a96aa3bSJed Brown       if (!equal) break;
24290a96aa3bSJed Brown     }
24300a96aa3bSJed Brown     if (p < size) { /* non-matching distribution: send the coarse to cover the fine */
24310a96aa3bSJed Brown       PetscInt          cStartC, cEndC;
24320a96aa3bSJed Brown       PetscSF           coveringSF;
24330a96aa3bSJed Brown       PetscInt          nleaves;
24340a96aa3bSJed Brown       PetscInt          count;
24350a96aa3bSJed Brown       PetscSFNode      *newClosurePointsC;
24360a96aa3bSJed Brown       p4est_quadrant_t *coverQuadsSend;
24370a96aa3bSJed Brown       p4est_topidx_t    fltC = p4estC->first_local_tree;
24380a96aa3bSJed Brown       p4est_topidx_t    lltC = p4estC->last_local_tree;
24390a96aa3bSJed Brown       p4est_topidx_t    t;
24400a96aa3bSJed Brown       PetscMPIInt       blockSizes[4]   = {P4EST_DIM, 2, 1, 1};
24419371c9d4SSatish Balay       MPI_Aint          blockOffsets[4] = {offsetof(p4est_quadrant_t, x), offsetof(p4est_quadrant_t, level), offsetof(p4est_quadrant_t, pad16), offsetof(p4est_quadrant_t, p)};
24420a96aa3bSJed Brown       MPI_Datatype      blockTypes[4]   = {MPI_INT32_T, MPI_INT8_T, MPI_INT16_T, MPI_INT32_T /* p.which_tree */};
24430a96aa3bSJed Brown       MPI_Datatype      quadStruct, quadType;
24440a96aa3bSJed Brown 
24459566063dSJacob Faibussowitsch       PetscCall(DMPlexGetSimplexOrBoxCells(plexC, 0, &cStartC, &cEndC));
24469566063dSJacob Faibussowitsch       PetscCall(DMPforestGetCellCoveringSF(comm, p4estC, p4estF, pforestC->cLocalStart, pforestC->cLocalEnd, &coveringSF));
24479566063dSJacob Faibussowitsch       PetscCall(PetscSFGetGraph(coveringSF, NULL, &nleaves, NULL, NULL));
24489566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(numClosureIndices * nleaves, &newClosurePointsC));
24499566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(nleaves, &coverQuads));
24509566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(cEndC - cStartC, &coverQuadsSend));
24510a96aa3bSJed Brown       count = 0;
24520a96aa3bSJed Brown       for (t = fltC; t <= lltC; t++) { /* unfortunately, we need to pack a send array, since quads are not stored packed in p4est */
24530a96aa3bSJed Brown         p4est_tree_t *tree = &(((p4est_tree_t *)p4estC->trees->array)[t]);
24540a96aa3bSJed Brown         PetscInt      q;
24550a96aa3bSJed Brown 
24569566063dSJacob Faibussowitsch         PetscCall(PetscMemcpy(&coverQuadsSend[count], tree->quadrants.array, tree->quadrants.elem_count * sizeof(p4est_quadrant_t)));
24570a96aa3bSJed Brown         for (q = 0; (size_t)q < tree->quadrants.elem_count; q++) coverQuadsSend[count + q].p.which_tree = t;
24580a96aa3bSJed Brown         count += tree->quadrants.elem_count;
24590a96aa3bSJed Brown       }
24600a96aa3bSJed Brown       /* p is of a union type p4est_quadrant_data, but only the p.which_tree field is active at this time. So, we
24610a96aa3bSJed Brown          have a simple blockTypes[] to use. Note that quadStruct does not count potential padding in array of
24620a96aa3bSJed Brown          p4est_quadrant_t. We have to call MPI_Type_create_resized() to change upper-bound of quadStruct.
24630a96aa3bSJed Brown        */
24649566063dSJacob Faibussowitsch       PetscCallMPI(MPI_Type_create_struct(4, blockSizes, blockOffsets, blockTypes, &quadStruct));
24659566063dSJacob Faibussowitsch       PetscCallMPI(MPI_Type_create_resized(quadStruct, 0, sizeof(p4est_quadrant_t), &quadType));
24669566063dSJacob Faibussowitsch       PetscCallMPI(MPI_Type_commit(&quadType));
24679566063dSJacob Faibussowitsch       PetscCall(PetscSFBcastBegin(coveringSF, nodeClosureType, closurePointsC, newClosurePointsC, MPI_REPLACE));
24689566063dSJacob Faibussowitsch       PetscCall(PetscSFBcastBegin(coveringSF, quadType, coverQuadsSend, coverQuads, MPI_REPLACE));
24699566063dSJacob Faibussowitsch       PetscCall(PetscSFBcastEnd(coveringSF, nodeClosureType, closurePointsC, newClosurePointsC, MPI_REPLACE));
24709566063dSJacob Faibussowitsch       PetscCall(PetscSFBcastEnd(coveringSF, quadType, coverQuadsSend, coverQuads, MPI_REPLACE));
24719566063dSJacob Faibussowitsch       PetscCallMPI(MPI_Type_free(&quadStruct));
24729566063dSJacob Faibussowitsch       PetscCallMPI(MPI_Type_free(&quadType));
24739566063dSJacob Faibussowitsch       PetscCall(PetscFree(coverQuadsSend));
24749566063dSJacob Faibussowitsch       PetscCall(PetscFree(closurePointsC));
24759566063dSJacob Faibussowitsch       PetscCall(PetscSFDestroy(&coveringSF));
24760a96aa3bSJed Brown       closurePointsC = newClosurePointsC;
24770a96aa3bSJed Brown 
24780a96aa3bSJed Brown       /* assign tree quads based on locations in coverQuads */
24790a96aa3bSJed Brown       {
24800a96aa3bSJed Brown         PetscInt q;
24810a96aa3bSJed Brown         for (q = 0; q < nleaves; q++) {
24820a96aa3bSJed Brown           p4est_locidx_t t = coverQuads[q].p.which_tree;
24830a96aa3bSJed Brown           if (!treeQuadCounts[t - fltF]++) treeQuads[t - fltF] = &coverQuads[q];
24840a96aa3bSJed Brown         }
24850a96aa3bSJed Brown       }
24860a96aa3bSJed Brown     }
24870a96aa3bSJed Brown   }
24880a96aa3bSJed Brown   if (!coverQuads) { /* matching partitions: assign tree quads based on locations in p4est native arrays */
24890a96aa3bSJed Brown     for (t = fltF; t <= lltF; t++) {
24900a96aa3bSJed Brown       p4est_tree_t *tree = &(((p4est_tree_t *)p4estC->trees->array)[t]);
24910a96aa3bSJed Brown 
24926497c311SBarry Smith       treeQuadCounts[t - fltF] = (PetscInt)tree->quadrants.elem_count;
24930a96aa3bSJed Brown       treeQuads[t - fltF]      = (p4est_quadrant_t *)tree->quadrants.array;
24940a96aa3bSJed Brown     }
24950a96aa3bSJed Brown   }
24960a96aa3bSJed Brown 
24970a96aa3bSJed Brown   {
24980a96aa3bSJed Brown     PetscInt     p;
24990a96aa3bSJed Brown     PetscInt     cLocalStartF;
25000a96aa3bSJed Brown     PetscSF      pointSF;
25010a96aa3bSJed Brown     PetscSFNode *roots;
25020a96aa3bSJed Brown     PetscInt    *rootType;
25030a96aa3bSJed Brown     DM           refTree = NULL;
25040a96aa3bSJed Brown     DMLabel      canonical;
25050a96aa3bSJed Brown     PetscInt    *childClosures[P4EST_CHILDREN] = {NULL};
25060a96aa3bSJed Brown     PetscInt    *rootClosure                   = NULL;
25070a96aa3bSJed Brown     PetscInt     coarseOffset;
25080a96aa3bSJed Brown     PetscInt     numCoarseQuads;
25090a96aa3bSJed Brown 
25109566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(pEndF - pStartF, &roots));
25119566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(pEndF - pStartF, &rootType));
25129566063dSJacob Faibussowitsch     PetscCall(DMGetPointSF(fine, &pointSF));
25130a96aa3bSJed Brown     for (p = pStartF; p < pEndF; p++) {
25140a96aa3bSJed Brown       roots[p - pStartF].rank  = -1;
25150a96aa3bSJed Brown       roots[p - pStartF].index = -1;
25160a96aa3bSJed Brown       rootType[p - pStartF]    = -1;
25170a96aa3bSJed Brown     }
25180a96aa3bSJed Brown     if (formCids) {
25190a96aa3bSJed Brown       PetscInt child;
25200a96aa3bSJed Brown 
25219566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(pEndF - pStartF, &cids));
25220a96aa3bSJed Brown       for (p = pStartF; p < pEndF; p++) cids[p - pStartF] = -2;
25239566063dSJacob Faibussowitsch       PetscCall(DMPlexGetReferenceTree(plexF, &refTree));
25249566063dSJacob Faibussowitsch       PetscCall(DMPlexGetTransitiveClosure(refTree, 0, PETSC_TRUE, NULL, &rootClosure));
25250a96aa3bSJed Brown       for (child = 0; child < P4EST_CHILDREN; child++) { /* get the closures of the child cells in the reference tree */
25269566063dSJacob Faibussowitsch         PetscCall(DMPlexGetTransitiveClosure(refTree, child + 1, PETSC_TRUE, NULL, &childClosures[child]));
25270a96aa3bSJed Brown       }
25289566063dSJacob Faibussowitsch       PetscCall(DMGetLabel(refTree, "canonical", &canonical));
25290a96aa3bSJed Brown     }
25300a96aa3bSJed Brown     cLocalStartF = pforestF->cLocalStart;
25310a96aa3bSJed Brown     for (t = fltF, coarseOffset = 0, numCoarseQuads = 0; t <= lltF; t++, coarseOffset += numCoarseQuads) {
25320a96aa3bSJed Brown       p4est_tree_t     *tree         = &(((p4est_tree_t *)p4estF->trees->array)[t]);
25336497c311SBarry Smith       PetscInt          numFineQuads = (PetscInt)tree->quadrants.elem_count;
25340a96aa3bSJed Brown       p4est_quadrant_t *coarseQuads  = treeQuads[t - fltF];
25350a96aa3bSJed Brown       p4est_quadrant_t *fineQuads    = (p4est_quadrant_t *)tree->quadrants.array;
25360a96aa3bSJed Brown       PetscInt          i, coarseCount = 0;
25370a96aa3bSJed Brown       PetscInt          offset = tree->quadrants_offset;
25380a96aa3bSJed Brown       sc_array_t        coarseQuadsArray;
25390a96aa3bSJed Brown 
25400a96aa3bSJed Brown       numCoarseQuads = treeQuadCounts[t - fltF];
2541792fecdfSBarry Smith       PetscCallP4est(sc_array_init_data, (&coarseQuadsArray, coarseQuads, sizeof(p4est_quadrant_t), (size_t)numCoarseQuads));
25420a96aa3bSJed Brown       for (i = 0; i < numFineQuads; i++) {
25430a96aa3bSJed Brown         PetscInt          c          = i + offset;
25440a96aa3bSJed Brown         p4est_quadrant_t *quad       = &fineQuads[i];
25450a96aa3bSJed Brown         p4est_quadrant_t *quadCoarse = NULL;
25460a96aa3bSJed Brown         ssize_t           disjoint   = -1;
25470a96aa3bSJed Brown 
25480a96aa3bSJed Brown         while (disjoint < 0 && coarseCount < numCoarseQuads) {
25490a96aa3bSJed Brown           quadCoarse = &coarseQuads[coarseCount];
2550792fecdfSBarry Smith           PetscCallP4estReturn(disjoint, p4est_quadrant_disjoint, (quadCoarse, quad));
25510a96aa3bSJed Brown           if (disjoint < 0) coarseCount++;
25520a96aa3bSJed Brown         }
255308401ef6SPierre Jolivet         PetscCheck(disjoint == 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "did not find overlapping coarse quad");
25540a96aa3bSJed Brown         if (quadCoarse->level > quad->level || (quadCoarse->level == quad->level && !transferIdent)) { /* the "coarse" mesh is finer than the fine mesh at the point: continue */
25550a96aa3bSJed Brown           if (transferIdent) {                                                                         /* find corners */
25560a96aa3bSJed Brown             PetscInt j = 0;
25570a96aa3bSJed Brown 
25580a96aa3bSJed Brown             do {
25590a96aa3bSJed Brown               if (j < P4EST_CHILDREN) {
25600a96aa3bSJed Brown                 p4est_quadrant_t cornerQuad;
25610a96aa3bSJed Brown                 int              equal;
25620a96aa3bSJed Brown 
2563792fecdfSBarry Smith                 PetscCallP4est(p4est_quadrant_corner_descendant, (quad, &cornerQuad, j, quadCoarse->level));
2564792fecdfSBarry Smith                 PetscCallP4estReturn(equal, p4est_quadrant_is_equal, (&cornerQuad, quadCoarse));
25650a96aa3bSJed Brown                 if (equal) {
25660a96aa3bSJed Brown                   PetscInt    petscJ = P4estVertToPetscVert[j];
25670a96aa3bSJed Brown                   PetscInt    p      = closurePointsF[numClosureIndices * c + (P4EST_INSUL - P4EST_CHILDREN) + petscJ].index;
25680a96aa3bSJed Brown                   PetscSFNode q      = closurePointsC[numClosureIndices * (coarseCount + coarseOffset) + (P4EST_INSUL - P4EST_CHILDREN) + petscJ];
25690a96aa3bSJed Brown 
25700a96aa3bSJed Brown                   roots[p - pStartF]    = q;
25711690c2aeSBarry Smith                   rootType[p - pStartF] = PETSC_INT_MAX;
25720a96aa3bSJed Brown                   cids[p - pStartF]     = -1;
25730a96aa3bSJed Brown                   j++;
25740a96aa3bSJed Brown                 }
25750a96aa3bSJed Brown               }
25760a96aa3bSJed Brown               coarseCount++;
25770a96aa3bSJed Brown               disjoint = 1;
25780a96aa3bSJed Brown               if (coarseCount < numCoarseQuads) {
25790a96aa3bSJed Brown                 quadCoarse = &coarseQuads[coarseCount];
2580792fecdfSBarry Smith                 PetscCallP4estReturn(disjoint, p4est_quadrant_disjoint, (quadCoarse, quad));
25810a96aa3bSJed Brown               }
25820a96aa3bSJed Brown             } while (!disjoint);
25830a96aa3bSJed Brown           }
25840a96aa3bSJed Brown           continue;
25850a96aa3bSJed Brown         }
25860a96aa3bSJed Brown         if (quadCoarse->level == quad->level) { /* same quad present in coarse and fine mesh */
25870a96aa3bSJed Brown           PetscInt j;
25880a96aa3bSJed Brown           for (j = 0; j < numClosureIndices; j++) {
25890a96aa3bSJed Brown             PetscInt p = closurePointsF[numClosureIndices * c + j].index;
25900a96aa3bSJed Brown 
25910a96aa3bSJed Brown             roots[p - pStartF]    = closurePointsC[numClosureIndices * (coarseCount + coarseOffset) + j];
25921690c2aeSBarry Smith             rootType[p - pStartF] = PETSC_INT_MAX; /* unconditionally accept */
25930a96aa3bSJed Brown             cids[p - pStartF]     = -1;
25940a96aa3bSJed Brown           }
25950a96aa3bSJed Brown         } else {
25960a96aa3bSJed Brown           PetscInt levelDiff                 = quad->level - quadCoarse->level;
25970a96aa3bSJed Brown           PetscInt proposedCids[P4EST_INSUL] = {0};
25980a96aa3bSJed Brown 
25990a96aa3bSJed Brown           if (formCids) {
26000a96aa3bSJed Brown             PetscInt  cl;
26010a96aa3bSJed Brown             PetscInt *pointClosure = NULL;
26020a96aa3bSJed Brown             int       cid;
26030a96aa3bSJed Brown 
260408401ef6SPierre Jolivet             PetscCheck(levelDiff <= 1, PETSC_COMM_SELF, PETSC_ERR_USER, "Recursive child ids not implemented");
2605792fecdfSBarry Smith             PetscCallP4estReturn(cid, p4est_quadrant_child_id, (quad));
26069566063dSJacob Faibussowitsch             PetscCall(DMPlexGetTransitiveClosure(plexF, c + cLocalStartF, PETSC_TRUE, NULL, &pointClosure));
26070a96aa3bSJed Brown             for (cl = 0; cl < P4EST_INSUL; cl++) {
26080a96aa3bSJed Brown               PetscInt       p      = pointClosure[2 * cl];
26090a96aa3bSJed Brown               PetscInt       point  = childClosures[cid][2 * cl];
26100a96aa3bSJed Brown               PetscInt       ornt   = childClosures[cid][2 * cl + 1];
26110a96aa3bSJed Brown               PetscInt       newcid = -1;
26120a96aa3bSJed Brown               DMPolytopeType ct;
26130a96aa3bSJed Brown 
26141690c2aeSBarry Smith               if (rootType[p - pStartF] == PETSC_INT_MAX) continue;
26159566063dSJacob Faibussowitsch               PetscCall(DMPlexGetCellType(refTree, point, &ct));
26160a96aa3bSJed Brown               ornt = DMPolytopeConvertNewOrientation_Internal(ct, ornt);
26170a96aa3bSJed Brown               if (!cl) {
26180a96aa3bSJed Brown                 newcid = cid + 1;
26190a96aa3bSJed Brown               } else {
26200a96aa3bSJed Brown                 PetscInt rcl, parent, parentOrnt = 0;
26210a96aa3bSJed Brown 
26229566063dSJacob Faibussowitsch                 PetscCall(DMPlexGetTreeParent(refTree, point, &parent, NULL));
26230a96aa3bSJed Brown                 if (parent == point) {
26240a96aa3bSJed Brown                   newcid = -1;
26250a96aa3bSJed Brown                 } else if (!parent) { /* in the root */
26260a96aa3bSJed Brown                   newcid = point;
26270a96aa3bSJed Brown                 } else {
26280a96aa3bSJed Brown                   DMPolytopeType rct = DM_POLYTOPE_UNKNOWN;
26290a96aa3bSJed Brown 
26300a96aa3bSJed Brown                   for (rcl = 1; rcl < P4EST_INSUL; rcl++) {
26310a96aa3bSJed Brown                     if (rootClosure[2 * rcl] == parent) {
26329566063dSJacob Faibussowitsch                       PetscCall(DMPlexGetCellType(refTree, parent, &rct));
26330a96aa3bSJed Brown                       parentOrnt = DMPolytopeConvertNewOrientation_Internal(rct, rootClosure[2 * rcl + 1]);
26340a96aa3bSJed Brown                       break;
26350a96aa3bSJed Brown                     }
26360a96aa3bSJed Brown                   }
263708401ef6SPierre Jolivet                   PetscCheck(rcl < P4EST_INSUL, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Couldn't find parent in root closure");
26389566063dSJacob Faibussowitsch                   PetscCall(DMPlexReferenceTreeGetChildSymmetry(refTree, parent, parentOrnt, ornt, point, DMPolytopeConvertNewOrientation_Internal(rct, pointClosure[2 * rcl + 1]), NULL, &newcid));
26390a96aa3bSJed Brown                 }
26400a96aa3bSJed Brown               }
26410a96aa3bSJed Brown               if (newcid >= 0) {
264248a46eb9SPierre Jolivet                 if (canonical) PetscCall(DMLabelGetValue(canonical, newcid, &newcid));
26430a96aa3bSJed Brown                 proposedCids[cl] = newcid;
26440a96aa3bSJed Brown               }
26450a96aa3bSJed Brown             }
26469566063dSJacob Faibussowitsch             PetscCall(DMPlexRestoreTransitiveClosure(plexF, c + cLocalStartF, PETSC_TRUE, NULL, &pointClosure));
26470a96aa3bSJed Brown           }
26489371c9d4SSatish Balay           p4est_qcoord_t coarseBound[2][P4EST_DIM] = {
26499371c9d4SSatish Balay             {quadCoarse->x, quadCoarse->y,
26500a96aa3bSJed Brown   #if defined(P4_TO_P8)
26510a96aa3bSJed Brown              quadCoarse->z
26520a96aa3bSJed Brown   #endif
26539371c9d4SSatish Balay             },
26549371c9d4SSatish Balay             {0}
26559371c9d4SSatish Balay           };
26569371c9d4SSatish Balay           p4est_qcoord_t fineBound[2][P4EST_DIM] = {
26579371c9d4SSatish Balay             {quad->x, quad->y,
26580a96aa3bSJed Brown   #if defined(P4_TO_P8)
26590a96aa3bSJed Brown              quad->z
26600a96aa3bSJed Brown   #endif
26619371c9d4SSatish Balay             },
26629371c9d4SSatish Balay             {0}
26639371c9d4SSatish Balay           };
26640a96aa3bSJed Brown           PetscInt j;
26650a96aa3bSJed Brown           for (j = 0; j < P4EST_DIM; j++) { /* get the coordinates of cell boundaries in each direction */
26660a96aa3bSJed Brown             coarseBound[1][j] = coarseBound[0][j] + P4EST_QUADRANT_LEN(quadCoarse->level);
26670a96aa3bSJed Brown             fineBound[1][j]   = fineBound[0][j] + P4EST_QUADRANT_LEN(quad->level);
26680a96aa3bSJed Brown           }
26690a96aa3bSJed Brown           for (j = 0; j < numClosureIndices; j++) {
26700a96aa3bSJed Brown             PetscInt    l, p;
26710a96aa3bSJed Brown             PetscSFNode q;
26720a96aa3bSJed Brown 
26730a96aa3bSJed Brown             p = closurePointsF[numClosureIndices * c + j].index;
26741690c2aeSBarry Smith             if (rootType[p - pStartF] == PETSC_INT_MAX) continue;
26750a96aa3bSJed Brown             if (j == 0) { /* volume: ancestor is volume */
26760a96aa3bSJed Brown               l = 0;
26770a96aa3bSJed Brown             } else if (j < 1 + P4EST_FACES) { /* facet */
26780a96aa3bSJed Brown               PetscInt face       = PetscFaceToP4estFace[j - 1];
26790a96aa3bSJed Brown               PetscInt direction  = face / 2;
26800a96aa3bSJed Brown               PetscInt coarseFace = -1;
26810a96aa3bSJed Brown 
26820a96aa3bSJed Brown               if (coarseBound[face % 2][direction] == fineBound[face % 2][direction]) {
26830a96aa3bSJed Brown                 coarseFace = face;
26840a96aa3bSJed Brown                 l          = 1 + P4estFaceToPetscFace[coarseFace];
26850a96aa3bSJed Brown               } else {
26860a96aa3bSJed Brown                 l = 0;
26870a96aa3bSJed Brown               }
26880a96aa3bSJed Brown   #if defined(P4_TO_P8)
26890a96aa3bSJed Brown             } else if (j < 1 + P4EST_FACES + P8EST_EDGES) {
26900a96aa3bSJed Brown               PetscInt  edge       = PetscEdgeToP4estEdge[j - (1 + P4EST_FACES)];
26910a96aa3bSJed Brown               PetscInt  direction  = edge / 4;
26920a96aa3bSJed Brown               PetscInt  mod        = edge % 4;
26930a96aa3bSJed Brown               PetscInt  coarseEdge = -1, coarseFace = -1;
26940a96aa3bSJed Brown               PetscInt  minDir = PetscMin((direction + 1) % 3, (direction + 2) % 3);
26950a96aa3bSJed Brown               PetscInt  maxDir = PetscMax((direction + 1) % 3, (direction + 2) % 3);
26960a96aa3bSJed Brown               PetscBool dirTest[2];
26970a96aa3bSJed Brown 
26980a96aa3bSJed Brown               dirTest[0] = (PetscBool)(coarseBound[mod % 2][minDir] == fineBound[mod % 2][minDir]);
26990a96aa3bSJed Brown               dirTest[1] = (PetscBool)(coarseBound[mod / 2][maxDir] == fineBound[mod / 2][maxDir]);
27000a96aa3bSJed Brown 
27010a96aa3bSJed Brown               if (dirTest[0] && dirTest[1]) { /* fine edge falls on coarse edge */
27020a96aa3bSJed Brown                 coarseEdge = edge;
27030a96aa3bSJed Brown                 l          = 1 + P4EST_FACES + P4estEdgeToPetscEdge[coarseEdge];
27040a96aa3bSJed Brown               } else if (dirTest[0]) { /* fine edge falls on a coarse face in the minDir direction */
27050a96aa3bSJed Brown                 coarseFace = 2 * minDir + (mod % 2);
27060a96aa3bSJed Brown                 l          = 1 + P4estFaceToPetscFace[coarseFace];
27070a96aa3bSJed Brown               } else if (dirTest[1]) { /* fine edge falls on a coarse face in the maxDir direction */
27080a96aa3bSJed Brown                 coarseFace = 2 * maxDir + (mod / 2);
27090a96aa3bSJed Brown                 l          = 1 + P4estFaceToPetscFace[coarseFace];
27100a96aa3bSJed Brown               } else {
27110a96aa3bSJed Brown                 l = 0;
27120a96aa3bSJed Brown               }
27130a96aa3bSJed Brown   #endif
27140a96aa3bSJed Brown             } else {
27150a96aa3bSJed Brown               PetscInt  vertex = PetscVertToP4estVert[P4EST_CHILDREN - (P4EST_INSUL - j)];
27160a96aa3bSJed Brown               PetscBool dirTest[P4EST_DIM];
27170a96aa3bSJed Brown               PetscInt  m;
27180a96aa3bSJed Brown               PetscInt  numMatch     = 0;
27190a96aa3bSJed Brown               PetscInt  coarseVertex = -1, coarseFace = -1;
27200a96aa3bSJed Brown   #if defined(P4_TO_P8)
27210a96aa3bSJed Brown               PetscInt coarseEdge = -1;
27220a96aa3bSJed Brown   #endif
27230a96aa3bSJed Brown 
27240a96aa3bSJed Brown               for (m = 0; m < P4EST_DIM; m++) {
27250a96aa3bSJed Brown                 dirTest[m] = (PetscBool)(coarseBound[(vertex >> m) & 1][m] == fineBound[(vertex >> m) & 1][m]);
27260a96aa3bSJed Brown                 if (dirTest[m]) numMatch++;
27270a96aa3bSJed Brown               }
27280a96aa3bSJed Brown               if (numMatch == P4EST_DIM) { /* vertex on vertex */
27290a96aa3bSJed Brown                 coarseVertex = vertex;
27300a96aa3bSJed Brown                 l            = P4EST_INSUL - (P4EST_CHILDREN - P4estVertToPetscVert[coarseVertex]);
27310a96aa3bSJed Brown               } else if (numMatch == 1) { /* vertex on face */
27320a96aa3bSJed Brown                 for (m = 0; m < P4EST_DIM; m++) {
27330a96aa3bSJed Brown                   if (dirTest[m]) {
27340a96aa3bSJed Brown                     coarseFace = 2 * m + ((vertex >> m) & 1);
27350a96aa3bSJed Brown                     break;
27360a96aa3bSJed Brown                   }
27370a96aa3bSJed Brown                 }
27380a96aa3bSJed Brown                 l = 1 + P4estFaceToPetscFace[coarseFace];
27390a96aa3bSJed Brown   #if defined(P4_TO_P8)
27400a96aa3bSJed Brown               } else if (numMatch == 2) { /* vertex on edge */
27410a96aa3bSJed Brown                 for (m = 0; m < P4EST_DIM; m++) {
27420a96aa3bSJed Brown                   if (!dirTest[m]) {
27430a96aa3bSJed Brown                     PetscInt otherDir1 = (m + 1) % 3;
27440a96aa3bSJed Brown                     PetscInt otherDir2 = (m + 2) % 3;
27450a96aa3bSJed Brown                     PetscInt minDir    = PetscMin(otherDir1, otherDir2);
27460a96aa3bSJed Brown                     PetscInt maxDir    = PetscMax(otherDir1, otherDir2);
27470a96aa3bSJed Brown 
27480a96aa3bSJed Brown                     coarseEdge = m * 4 + 2 * ((vertex >> maxDir) & 1) + ((vertex >> minDir) & 1);
27490a96aa3bSJed Brown                     break;
27500a96aa3bSJed Brown                   }
27510a96aa3bSJed Brown                 }
27520a96aa3bSJed Brown                 l = 1 + P4EST_FACES + P4estEdgeToPetscEdge[coarseEdge];
27530a96aa3bSJed Brown   #endif
27540a96aa3bSJed Brown               } else { /* volume */
27550a96aa3bSJed Brown                 l = 0;
27560a96aa3bSJed Brown               }
27570a96aa3bSJed Brown             }
27580a96aa3bSJed Brown             q = closurePointsC[numClosureIndices * (coarseCount + coarseOffset) + l];
27590a96aa3bSJed Brown             if (l > rootType[p - pStartF]) {
27600a96aa3bSJed Brown               if (l >= P4EST_INSUL - P4EST_CHILDREN) { /* vertex on vertex: unconditional acceptance */
27610a96aa3bSJed Brown                 if (transferIdent) {
27620a96aa3bSJed Brown                   roots[p - pStartF]    = q;
27631690c2aeSBarry Smith                   rootType[p - pStartF] = PETSC_INT_MAX;
27640a96aa3bSJed Brown                   if (formCids) cids[p - pStartF] = -1;
27650a96aa3bSJed Brown                 }
27660a96aa3bSJed Brown               } else {
27670a96aa3bSJed Brown                 PetscInt k, thisp = p, limit;
27680a96aa3bSJed Brown 
27690a96aa3bSJed Brown                 roots[p - pStartF]    = q;
27700a96aa3bSJed Brown                 rootType[p - pStartF] = l;
27710a96aa3bSJed Brown                 if (formCids) cids[p - pStartF] = proposedCids[j];
27720a96aa3bSJed Brown                 limit = transferIdent ? levelDiff : (levelDiff - 1);
27730a96aa3bSJed Brown                 for (k = 0; k < limit; k++) {
27740a96aa3bSJed Brown                   PetscInt parent;
27750a96aa3bSJed Brown 
27769566063dSJacob Faibussowitsch                   PetscCall(DMPlexGetTreeParent(plexF, thisp, &parent, NULL));
27770a96aa3bSJed Brown                   if (parent == thisp) break;
27780a96aa3bSJed Brown 
27790a96aa3bSJed Brown                   roots[parent - pStartF]    = q;
27801690c2aeSBarry Smith                   rootType[parent - pStartF] = PETSC_INT_MAX;
27810a96aa3bSJed Brown                   if (formCids) cids[parent - pStartF] = -1;
27820a96aa3bSJed Brown                   thisp = parent;
27830a96aa3bSJed Brown                 }
27840a96aa3bSJed Brown               }
27850a96aa3bSJed Brown             }
27860a96aa3bSJed Brown           }
27870a96aa3bSJed Brown         }
27880a96aa3bSJed Brown       }
27890a96aa3bSJed Brown     }
27900a96aa3bSJed Brown 
27910a96aa3bSJed Brown     /* now every cell has labeled the points in its closure, so we first make sure everyone agrees by reducing to roots, and the broadcast the agreements */
27920a96aa3bSJed Brown     if (size > 1) {
27930a96aa3bSJed Brown       PetscInt *rootTypeCopy, p;
27940a96aa3bSJed Brown 
27959566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(pEndF - pStartF, &rootTypeCopy));
27969566063dSJacob Faibussowitsch       PetscCall(PetscArraycpy(rootTypeCopy, rootType, pEndF - pStartF));
279757168dbeSPierre Jolivet       PetscCall(PetscSFReduceBegin(pointSF, MPIU_INT, rootTypeCopy, rootTypeCopy, MPI_MAX));
279857168dbeSPierre Jolivet       PetscCall(PetscSFReduceEnd(pointSF, MPIU_INT, rootTypeCopy, rootTypeCopy, MPI_MAX));
27999566063dSJacob Faibussowitsch       PetscCall(PetscSFBcastBegin(pointSF, MPIU_INT, rootTypeCopy, rootTypeCopy, MPI_REPLACE));
28009566063dSJacob Faibussowitsch       PetscCall(PetscSFBcastEnd(pointSF, MPIU_INT, rootTypeCopy, rootTypeCopy, MPI_REPLACE));
28010a96aa3bSJed Brown       for (p = pStartF; p < pEndF; p++) {
28020a96aa3bSJed Brown         if (rootTypeCopy[p - pStartF] > rootType[p - pStartF]) { /* another process found a root of higher type (e.g. vertex instead of edge), which we want to accept, so nullify this */
28030a96aa3bSJed Brown           roots[p - pStartF].rank  = -1;
28040a96aa3bSJed Brown           roots[p - pStartF].index = -1;
28050a96aa3bSJed Brown         }
2806ac530a7eSPierre Jolivet         if (formCids && rootTypeCopy[p - pStartF] == PETSC_INT_MAX) cids[p - pStartF] = -1; /* we have found an antecedent that is the same: no child id */
28070a96aa3bSJed Brown       }
28089566063dSJacob Faibussowitsch       PetscCall(PetscFree(rootTypeCopy));
28099566063dSJacob Faibussowitsch       PetscCall(PetscSFReduceBegin(pointSF, nodeType, roots, roots, sfNodeReduce));
28109566063dSJacob Faibussowitsch       PetscCall(PetscSFReduceEnd(pointSF, nodeType, roots, roots, sfNodeReduce));
28119566063dSJacob Faibussowitsch       PetscCall(PetscSFBcastBegin(pointSF, nodeType, roots, roots, MPI_REPLACE));
28129566063dSJacob Faibussowitsch       PetscCall(PetscSFBcastEnd(pointSF, nodeType, roots, roots, MPI_REPLACE));
28130a96aa3bSJed Brown     }
28149566063dSJacob Faibussowitsch     PetscCall(PetscFree(rootType));
28150a96aa3bSJed Brown 
28160a96aa3bSJed Brown     {
28170a96aa3bSJed Brown       PetscInt     numRoots;
28180a96aa3bSJed Brown       PetscInt     numLeaves;
28190a96aa3bSJed Brown       PetscInt    *leaves;
28200a96aa3bSJed Brown       PetscSFNode *iremote;
28210a96aa3bSJed Brown       /* count leaves */
28220a96aa3bSJed Brown 
28230a96aa3bSJed Brown       numRoots = pEndC - pStartC;
28240a96aa3bSJed Brown 
28250a96aa3bSJed Brown       numLeaves = 0;
28260a96aa3bSJed Brown       for (p = pStartF; p < pEndF; p++) {
28270a96aa3bSJed Brown         if (roots[p - pStartF].index >= 0) numLeaves++;
28280a96aa3bSJed Brown       }
28299566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(numLeaves, &leaves));
28309566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(numLeaves, &iremote));
28310a96aa3bSJed Brown       numLeaves = 0;
28320a96aa3bSJed Brown       for (p = pStartF; p < pEndF; p++) {
28330a96aa3bSJed Brown         if (roots[p - pStartF].index >= 0) {
28340a96aa3bSJed Brown           leaves[numLeaves]  = p - pStartF;
28350a96aa3bSJed Brown           iremote[numLeaves] = roots[p - pStartF];
28360a96aa3bSJed Brown           numLeaves++;
28370a96aa3bSJed Brown         }
28380a96aa3bSJed Brown       }
28399566063dSJacob Faibussowitsch       PetscCall(PetscFree(roots));
28409566063dSJacob Faibussowitsch       PetscCall(PetscSFCreate(comm, sf));
28410a96aa3bSJed Brown       if (numLeaves == (pEndF - pStartF)) {
28429566063dSJacob Faibussowitsch         PetscCall(PetscFree(leaves));
28439566063dSJacob Faibussowitsch         PetscCall(PetscSFSetGraph(*sf, numRoots, numLeaves, NULL, PETSC_OWN_POINTER, iremote, PETSC_OWN_POINTER));
28440a96aa3bSJed Brown       } else {
28459566063dSJacob Faibussowitsch         PetscCall(PetscSFSetGraph(*sf, numRoots, numLeaves, leaves, PETSC_OWN_POINTER, iremote, PETSC_OWN_POINTER));
28460a96aa3bSJed Brown       }
28470a96aa3bSJed Brown     }
28480a96aa3bSJed Brown     if (formCids) {
28490a96aa3bSJed Brown       PetscSF  pointSF;
28500a96aa3bSJed Brown       PetscInt child;
28510a96aa3bSJed Brown 
28529566063dSJacob Faibussowitsch       PetscCall(DMPlexGetReferenceTree(plexF, &refTree));
28539566063dSJacob Faibussowitsch       PetscCall(DMGetPointSF(plexF, &pointSF));
285457168dbeSPierre Jolivet       PetscCall(PetscSFReduceBegin(pointSF, MPIU_INT, cids, cids, MPI_MAX));
285557168dbeSPierre Jolivet       PetscCall(PetscSFReduceEnd(pointSF, MPIU_INT, cids, cids, MPI_MAX));
28560a96aa3bSJed Brown       if (childIds) *childIds = cids;
285748a46eb9SPierre Jolivet       for (child = 0; child < P4EST_CHILDREN; child++) PetscCall(DMPlexRestoreTransitiveClosure(refTree, child + 1, PETSC_TRUE, NULL, &childClosures[child]));
28589566063dSJacob Faibussowitsch       PetscCall(DMPlexRestoreTransitiveClosure(refTree, 0, PETSC_TRUE, NULL, &rootClosure));
28590a96aa3bSJed Brown     }
28600a96aa3bSJed Brown   }
28610a96aa3bSJed Brown   if (saveInCoarse) { /* cache results */
28629566063dSJacob Faibussowitsch     PetscCall(PetscObjectReference((PetscObject)*sf));
28630a96aa3bSJed Brown     pforestC->pointSelfToAdaptSF = *sf;
28640a96aa3bSJed Brown     if (!childIds) {
28650a96aa3bSJed Brown       pforestC->pointSelfToAdaptCids = cids;
28660a96aa3bSJed Brown     } else {
28679566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(pEndF - pStartF, &pforestC->pointSelfToAdaptCids));
28689566063dSJacob Faibussowitsch       PetscCall(PetscArraycpy(pforestC->pointSelfToAdaptCids, cids, pEndF - pStartF));
28690a96aa3bSJed Brown     }
28700a96aa3bSJed Brown   } else if (saveInFine) {
28719566063dSJacob Faibussowitsch     PetscCall(PetscObjectReference((PetscObject)*sf));
28720a96aa3bSJed Brown     pforestF->pointAdaptToSelfSF = *sf;
28730a96aa3bSJed Brown     if (!childIds) {
28740a96aa3bSJed Brown       pforestF->pointAdaptToSelfCids = cids;
28750a96aa3bSJed Brown     } else {
28769566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(pEndF - pStartF, &pforestF->pointAdaptToSelfCids));
28779566063dSJacob Faibussowitsch       PetscCall(PetscArraycpy(pforestF->pointAdaptToSelfCids, cids, pEndF - pStartF));
28780a96aa3bSJed Brown     }
28790a96aa3bSJed Brown   }
28809566063dSJacob Faibussowitsch   PetscCall(PetscFree2(treeQuads, treeQuadCounts));
28819566063dSJacob Faibussowitsch   PetscCall(PetscFree(coverQuads));
28829566063dSJacob Faibussowitsch   PetscCall(PetscFree(closurePointsC));
28839566063dSJacob Faibussowitsch   PetscCall(PetscFree(closurePointsF));
28849566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Type_free(&nodeClosureType));
28859566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Op_free(&sfNodeReduce));
28869566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Type_free(&nodeType));
28873ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
28880a96aa3bSJed Brown }
28890a96aa3bSJed Brown 
28900a96aa3bSJed Brown /* children are sf leaves of parents */
DMPforestGetTransferSF_Internal(DM coarse,DM fine,const PetscInt dofPerDim[],PetscSF * sf,PetscBool transferIdent,PetscInt * childIds[])2891d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPforestGetTransferSF_Internal(DM coarse, DM fine, const PetscInt dofPerDim[], PetscSF *sf, PetscBool transferIdent, PetscInt *childIds[])
2892d71ae5a4SJacob Faibussowitsch {
28930a96aa3bSJed Brown   MPI_Comm           comm;
2894d70f29a3SPierre Jolivet   PetscMPIInt        rank;
28950a96aa3bSJed Brown   DM_Forest_pforest *pforestC, *pforestF;
28960a96aa3bSJed Brown   DM                 plexC, plexF;
28970a96aa3bSJed Brown   PetscInt           pStartC, pEndC, pStartF, pEndF;
28980a96aa3bSJed Brown   PetscSF            pointTransferSF;
28990a96aa3bSJed Brown   PetscBool          allOnes = PETSC_TRUE;
29000a96aa3bSJed Brown 
29010a96aa3bSJed Brown   PetscFunctionBegin;
29020a96aa3bSJed Brown   pforestC = (DM_Forest_pforest *)((DM_Forest *)coarse->data)->data;
29030a96aa3bSJed Brown   pforestF = (DM_Forest_pforest *)((DM_Forest *)fine->data)->data;
290408401ef6SPierre Jolivet   PetscCheck(pforestC->topo == pforestF->topo, PetscObjectComm((PetscObject)coarse), PETSC_ERR_ARG_INCOMP, "DM's must have the same base DM");
29050a96aa3bSJed Brown   comm = PetscObjectComm((PetscObject)coarse);
29069566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(comm, &rank));
29070a96aa3bSJed Brown 
29080a96aa3bSJed Brown   {
29090a96aa3bSJed Brown     PetscInt i;
29100a96aa3bSJed Brown     for (i = 0; i <= P4EST_DIM; i++) {
29110a96aa3bSJed Brown       if (dofPerDim[i] != 1) {
29120a96aa3bSJed Brown         allOnes = PETSC_FALSE;
29130a96aa3bSJed Brown         break;
29140a96aa3bSJed Brown       }
29150a96aa3bSJed Brown     }
29160a96aa3bSJed Brown   }
29179566063dSJacob Faibussowitsch   PetscCall(DMPforestGetTransferSF_Point(coarse, fine, &pointTransferSF, transferIdent, childIds));
29180a96aa3bSJed Brown   if (allOnes) {
29190a96aa3bSJed Brown     *sf = pointTransferSF;
29203ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
29210a96aa3bSJed Brown   }
29220a96aa3bSJed Brown 
29239566063dSJacob Faibussowitsch   PetscCall(DMPforestGetPlex(fine, &plexF));
29249566063dSJacob Faibussowitsch   PetscCall(DMPlexGetChart(plexF, &pStartF, &pEndF));
29259566063dSJacob Faibussowitsch   PetscCall(DMPforestGetPlex(coarse, &plexC));
29269566063dSJacob Faibussowitsch   PetscCall(DMPlexGetChart(plexC, &pStartC, &pEndC));
29270a96aa3bSJed Brown   {
29280a96aa3bSJed Brown     PetscInt           numRoots;
29290a96aa3bSJed Brown     PetscInt           numLeaves;
29300a96aa3bSJed Brown     const PetscInt    *leaves;
29310a96aa3bSJed Brown     const PetscSFNode *iremote;
29320a96aa3bSJed Brown     PetscInt           d;
29330a96aa3bSJed Brown     PetscSection       leafSection, rootSection;
29340a96aa3bSJed Brown 
2935217f96c1SStefano Zampini     /* count leaves */
29369566063dSJacob Faibussowitsch     PetscCall(PetscSFGetGraph(pointTransferSF, &numRoots, &numLeaves, &leaves, &iremote));
29379566063dSJacob Faibussowitsch     PetscCall(PetscSectionCreate(PETSC_COMM_SELF, &rootSection));
29389566063dSJacob Faibussowitsch     PetscCall(PetscSectionCreate(PETSC_COMM_SELF, &leafSection));
29399566063dSJacob Faibussowitsch     PetscCall(PetscSectionSetChart(rootSection, pStartC, pEndC));
29409566063dSJacob Faibussowitsch     PetscCall(PetscSectionSetChart(leafSection, pStartF, pEndF));
29410a96aa3bSJed Brown 
29420a96aa3bSJed Brown     for (d = 0; d <= P4EST_DIM; d++) {
29430a96aa3bSJed Brown       PetscInt startC, endC, e;
29440a96aa3bSJed Brown 
29459566063dSJacob Faibussowitsch       PetscCall(DMPlexGetSimplexOrBoxCells(plexC, P4EST_DIM - d, &startC, &endC));
294648a46eb9SPierre Jolivet       for (e = startC; e < endC; e++) PetscCall(PetscSectionSetDof(rootSection, e, dofPerDim[d]));
29470a96aa3bSJed Brown     }
29480a96aa3bSJed Brown 
29490a96aa3bSJed Brown     for (d = 0; d <= P4EST_DIM; d++) {
29500a96aa3bSJed Brown       PetscInt startF, endF, e;
29510a96aa3bSJed Brown 
29529566063dSJacob Faibussowitsch       PetscCall(DMPlexGetSimplexOrBoxCells(plexF, P4EST_DIM - d, &startF, &endF));
295348a46eb9SPierre Jolivet       for (e = startF; e < endF; e++) PetscCall(PetscSectionSetDof(leafSection, e, dofPerDim[d]));
29540a96aa3bSJed Brown     }
29550a96aa3bSJed Brown 
29569566063dSJacob Faibussowitsch     PetscCall(PetscSectionSetUp(rootSection));
29579566063dSJacob Faibussowitsch     PetscCall(PetscSectionSetUp(leafSection));
29580a96aa3bSJed Brown     {
29590a96aa3bSJed Brown       PetscInt     nroots, nleaves;
29600a96aa3bSJed Brown       PetscInt    *mine, i, p;
29610a96aa3bSJed Brown       PetscInt    *offsets, *offsetsRoot;
29620a96aa3bSJed Brown       PetscSFNode *remote;
29630a96aa3bSJed Brown 
29649566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(pEndF - pStartF, &offsets));
29659566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(pEndC - pStartC, &offsetsRoot));
296648a46eb9SPierre Jolivet       for (p = pStartC; p < pEndC; p++) PetscCall(PetscSectionGetOffset(rootSection, p, &offsetsRoot[p - pStartC]));
29679566063dSJacob Faibussowitsch       PetscCall(PetscSFBcastBegin(pointTransferSF, MPIU_INT, offsetsRoot, offsets, MPI_REPLACE));
29689566063dSJacob Faibussowitsch       PetscCall(PetscSFBcastEnd(pointTransferSF, MPIU_INT, offsetsRoot, offsets, MPI_REPLACE));
29699566063dSJacob Faibussowitsch       PetscCall(PetscSectionGetStorageSize(rootSection, &nroots));
29700a96aa3bSJed Brown       nleaves = 0;
29710a96aa3bSJed Brown       for (i = 0; i < numLeaves; i++) {
29720a96aa3bSJed Brown         PetscInt leaf = leaves ? leaves[i] : i;
29730a96aa3bSJed Brown         PetscInt dof;
29740a96aa3bSJed Brown 
29759566063dSJacob Faibussowitsch         PetscCall(PetscSectionGetDof(leafSection, leaf, &dof));
29760a96aa3bSJed Brown         nleaves += dof;
29770a96aa3bSJed Brown       }
29789566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(nleaves, &mine));
29799566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(nleaves, &remote));
29800a96aa3bSJed Brown       nleaves = 0;
29810a96aa3bSJed Brown       for (i = 0; i < numLeaves; i++) {
29820a96aa3bSJed Brown         PetscInt leaf = leaves ? leaves[i] : i;
29830a96aa3bSJed Brown         PetscInt dof;
29840a96aa3bSJed Brown         PetscInt off, j;
29850a96aa3bSJed Brown 
29869566063dSJacob Faibussowitsch         PetscCall(PetscSectionGetDof(leafSection, leaf, &dof));
29879566063dSJacob Faibussowitsch         PetscCall(PetscSectionGetOffset(leafSection, leaf, &off));
29880a96aa3bSJed Brown         for (j = 0; j < dof; j++) {
29890a96aa3bSJed Brown           remote[nleaves].rank  = iremote[i].rank;
29900a96aa3bSJed Brown           remote[nleaves].index = offsets[leaf] + j;
29910a96aa3bSJed Brown           mine[nleaves++]       = off + j;
29920a96aa3bSJed Brown         }
29930a96aa3bSJed Brown       }
29949566063dSJacob Faibussowitsch       PetscCall(PetscFree(offsetsRoot));
29959566063dSJacob Faibussowitsch       PetscCall(PetscFree(offsets));
29969566063dSJacob Faibussowitsch       PetscCall(PetscSFCreate(comm, sf));
29979566063dSJacob Faibussowitsch       PetscCall(PetscSFSetGraph(*sf, nroots, nleaves, mine, PETSC_OWN_POINTER, remote, PETSC_OWN_POINTER));
29980a96aa3bSJed Brown     }
29999566063dSJacob Faibussowitsch     PetscCall(PetscSectionDestroy(&leafSection));
30009566063dSJacob Faibussowitsch     PetscCall(PetscSectionDestroy(&rootSection));
30019566063dSJacob Faibussowitsch     PetscCall(PetscSFDestroy(&pointTransferSF));
30020a96aa3bSJed Brown   }
30033ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
30040a96aa3bSJed Brown }
30050a96aa3bSJed Brown 
DMPforestGetTransferSF(DM dmA,DM dmB,const PetscInt dofPerDim[],PetscSF * sfAtoB,PetscSF * sfBtoA)3006d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPforestGetTransferSF(DM dmA, DM dmB, const PetscInt dofPerDim[], PetscSF *sfAtoB, PetscSF *sfBtoA)
3007d71ae5a4SJacob Faibussowitsch {
30080a96aa3bSJed Brown   DM          adaptA, adaptB;
30090a96aa3bSJed Brown   DMAdaptFlag purpose;
30100a96aa3bSJed Brown 
30110a96aa3bSJed Brown   PetscFunctionBegin;
30129566063dSJacob Faibussowitsch   PetscCall(DMForestGetAdaptivityForest(dmA, &adaptA));
30139566063dSJacob Faibussowitsch   PetscCall(DMForestGetAdaptivityForest(dmB, &adaptB));
30140a96aa3bSJed Brown   /* it is more efficient when the coarser mesh is the first argument: reorder if we know one is coarser than the other */
30150a96aa3bSJed Brown   if (adaptA && adaptA->data == dmB->data) { /* dmA was adapted from dmB */
30169566063dSJacob Faibussowitsch     PetscCall(DMForestGetAdaptivityPurpose(dmA, &purpose));
30170a96aa3bSJed Brown     if (purpose == DM_ADAPT_REFINE) {
30189566063dSJacob Faibussowitsch       PetscCall(DMPforestGetTransferSF(dmB, dmA, dofPerDim, sfBtoA, sfAtoB));
30193ba16761SJacob Faibussowitsch       PetscFunctionReturn(PETSC_SUCCESS);
30200a96aa3bSJed Brown     }
30210a96aa3bSJed Brown   } else if (adaptB && adaptB->data == dmA->data) { /* dmB was adapted from dmA */
30229566063dSJacob Faibussowitsch     PetscCall(DMForestGetAdaptivityPurpose(dmB, &purpose));
30230a96aa3bSJed Brown     if (purpose == DM_ADAPT_COARSEN) {
30249566063dSJacob Faibussowitsch       PetscCall(DMPforestGetTransferSF(dmB, dmA, dofPerDim, sfBtoA, sfAtoB));
30253ba16761SJacob Faibussowitsch       PetscFunctionReturn(PETSC_SUCCESS);
30260a96aa3bSJed Brown     }
30270a96aa3bSJed Brown   }
30281baa6e33SBarry Smith   if (sfAtoB) PetscCall(DMPforestGetTransferSF_Internal(dmA, dmB, dofPerDim, sfAtoB, PETSC_TRUE, NULL));
30291baa6e33SBarry Smith   if (sfBtoA) PetscCall(DMPforestGetTransferSF_Internal(dmB, dmA, dofPerDim, sfBtoA, (PetscBool)(sfAtoB == NULL), NULL));
30303ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
30310a96aa3bSJed Brown }
30320a96aa3bSJed Brown 
DMPforestLabelsInitialize(DM dm,DM plex)3033d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPforestLabelsInitialize(DM dm, DM plex)
3034d71ae5a4SJacob Faibussowitsch {
30350a96aa3bSJed Brown   DM_Forest         *forest  = (DM_Forest *)dm->data;
30360a96aa3bSJed Brown   DM_Forest_pforest *pforest = (DM_Forest_pforest *)forest->data;
30370a96aa3bSJed Brown   PetscInt           cLocalStart, cLocalEnd, cStart, cEnd, fStart, fEnd, eStart, eEnd, vStart, vEnd;
30380a96aa3bSJed Brown   PetscInt           cStartBase, cEndBase, fStartBase, fEndBase, vStartBase, vEndBase, eStartBase, eEndBase;
30390a96aa3bSJed Brown   PetscInt           pStart, pEnd, pStartBase, pEndBase, p;
30400a96aa3bSJed Brown   DM                 base;
30410a96aa3bSJed Brown   PetscInt          *star      = NULL, starSize;
30420a96aa3bSJed Brown   DMLabelLink        next      = dm->labels;
30430a96aa3bSJed Brown   PetscInt           guess     = 0;
30440a96aa3bSJed Brown   p4est_topidx_t     num_trees = pforest->topo->conn->num_trees;
30450a96aa3bSJed Brown 
30460a96aa3bSJed Brown   PetscFunctionBegin;
30470a96aa3bSJed Brown   pforest->labelsFinalized = PETSC_TRUE;
30480a96aa3bSJed Brown   cLocalStart              = pforest->cLocalStart;
30490a96aa3bSJed Brown   cLocalEnd                = pforest->cLocalEnd;
30509566063dSJacob Faibussowitsch   PetscCall(DMForestGetBaseDM(dm, &base));
30510a96aa3bSJed Brown   if (!base) {
30520a96aa3bSJed Brown     if (pforest->ghostName) { /* insert a label to make the boundaries, with stratum values denoting which face of the element touches the boundary */
30530a96aa3bSJed Brown       p4est_connectivity_t *conn  = pforest->topo->conn;
30540a96aa3bSJed Brown       p4est_t              *p4est = pforest->forest;
30550a96aa3bSJed Brown       p4est_tree_t         *trees = (p4est_tree_t *)p4est->trees->array;
30560a96aa3bSJed Brown       p4est_topidx_t        t, flt = p4est->first_local_tree;
30570a96aa3bSJed Brown       p4est_topidx_t        llt = pforest->forest->last_local_tree;
30580a96aa3bSJed Brown       DMLabel               ghostLabel;
30590a96aa3bSJed Brown       PetscInt              c;
30600a96aa3bSJed Brown 
30619566063dSJacob Faibussowitsch       PetscCall(DMCreateLabel(plex, pforest->ghostName));
30629566063dSJacob Faibussowitsch       PetscCall(DMGetLabel(plex, pforest->ghostName, &ghostLabel));
30630a96aa3bSJed Brown       for (c = cLocalStart, t = flt; t <= llt; t++) {
30640a96aa3bSJed Brown         p4est_tree_t     *tree     = &trees[t];
30650a96aa3bSJed Brown         p4est_quadrant_t *quads    = (p4est_quadrant_t *)tree->quadrants.array;
30660a96aa3bSJed Brown         PetscInt          numQuads = (PetscInt)tree->quadrants.elem_count;
30670a96aa3bSJed Brown         PetscInt          q;
30680a96aa3bSJed Brown 
30690a96aa3bSJed Brown         for (q = 0; q < numQuads; q++, c++) {
30700a96aa3bSJed Brown           p4est_quadrant_t *quad = &quads[q];
30710a96aa3bSJed Brown           PetscInt          f;
30720a96aa3bSJed Brown 
30730a96aa3bSJed Brown           for (f = 0; f < P4EST_FACES; f++) {
30740a96aa3bSJed Brown             p4est_quadrant_t neigh;
30750a96aa3bSJed Brown             int              isOutside;
30760a96aa3bSJed Brown 
3077792fecdfSBarry Smith             PetscCallP4est(p4est_quadrant_face_neighbor, (quad, f, &neigh));
3078792fecdfSBarry Smith             PetscCallP4estReturn(isOutside, p4est_quadrant_is_outside_face, (&neigh));
30790a96aa3bSJed Brown             if (isOutside) {
30800a96aa3bSJed Brown               p4est_topidx_t nt;
30810a96aa3bSJed Brown               PetscInt       nf;
30820a96aa3bSJed Brown 
30830a96aa3bSJed Brown               nt = conn->tree_to_tree[t * P4EST_FACES + f];
30840a96aa3bSJed Brown               nf = (PetscInt)conn->tree_to_face[t * P4EST_FACES + f];
30850a96aa3bSJed Brown               nf = nf % P4EST_FACES;
30860a96aa3bSJed Brown               if (nt == t && nf == f) {
30870a96aa3bSJed Brown                 PetscInt        plexF = P4estFaceToPetscFace[f];
30880a96aa3bSJed Brown                 const PetscInt *cone;
30890a96aa3bSJed Brown 
30909566063dSJacob Faibussowitsch                 PetscCall(DMPlexGetCone(plex, c, &cone));
30919566063dSJacob Faibussowitsch                 PetscCall(DMLabelSetValue(ghostLabel, cone[plexF], plexF + 1));
30920a96aa3bSJed Brown               }
30930a96aa3bSJed Brown             }
30940a96aa3bSJed Brown           }
30950a96aa3bSJed Brown         }
30960a96aa3bSJed Brown       }
30970a96aa3bSJed Brown     }
30983ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
30990a96aa3bSJed Brown   }
31009566063dSJacob Faibussowitsch   PetscCall(DMPlexGetSimplexOrBoxCells(base, 0, &cStartBase, &cEndBase));
31019566063dSJacob Faibussowitsch   PetscCall(DMPlexGetSimplexOrBoxCells(base, 1, &fStartBase, &fEndBase));
31029566063dSJacob Faibussowitsch   PetscCall(DMPlexGetSimplexOrBoxCells(base, P4EST_DIM - 1, &eStartBase, &eEndBase));
31039566063dSJacob Faibussowitsch   PetscCall(DMPlexGetDepthStratum(base, 0, &vStartBase, &vEndBase));
31040a96aa3bSJed Brown 
31059566063dSJacob Faibussowitsch   PetscCall(DMPlexGetSimplexOrBoxCells(plex, 0, &cStart, &cEnd));
31069566063dSJacob Faibussowitsch   PetscCall(DMPlexGetSimplexOrBoxCells(plex, 1, &fStart, &fEnd));
31079566063dSJacob Faibussowitsch   PetscCall(DMPlexGetSimplexOrBoxCells(plex, P4EST_DIM - 1, &eStart, &eEnd));
31089566063dSJacob Faibussowitsch   PetscCall(DMPlexGetDepthStratum(plex, 0, &vStart, &vEnd));
31090a96aa3bSJed Brown 
31109566063dSJacob Faibussowitsch   PetscCall(DMPlexGetChart(plex, &pStart, &pEnd));
31119566063dSJacob Faibussowitsch   PetscCall(DMPlexGetChart(base, &pStartBase, &pEndBase));
31120a96aa3bSJed Brown   /* go through the mesh: use star to find a quadrant that borders a point.  Use the closure to determine the
31130a96aa3bSJed Brown    * orientation of the quadrant relative to that point.  Use that to relate the point to the numbering in the base
31140a96aa3bSJed Brown    * mesh, and extract a label value (since the base mesh is redundantly distributed, can be found locally). */
31150a96aa3bSJed Brown   while (next) {
31160a96aa3bSJed Brown     DMLabel     baseLabel;
31170a96aa3bSJed Brown     DMLabel     label = next->label;
31180a96aa3bSJed Brown     PetscBool   isDepth, isCellType, isGhost, isVTK, isSpmap;
31190a96aa3bSJed Brown     const char *name;
31200a96aa3bSJed Brown 
31219566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetName((PetscObject)label, &name));
31229566063dSJacob Faibussowitsch     PetscCall(PetscStrcmp(name, "depth", &isDepth));
31230a96aa3bSJed Brown     if (isDepth) {
31240a96aa3bSJed Brown       next = next->next;
31250a96aa3bSJed Brown       continue;
31260a96aa3bSJed Brown     }
31279566063dSJacob Faibussowitsch     PetscCall(PetscStrcmp(name, "celltype", &isCellType));
31280a96aa3bSJed Brown     if (isCellType) {
31290a96aa3bSJed Brown       next = next->next;
31300a96aa3bSJed Brown       continue;
31310a96aa3bSJed Brown     }
31329566063dSJacob Faibussowitsch     PetscCall(PetscStrcmp(name, "ghost", &isGhost));
31330a96aa3bSJed Brown     if (isGhost) {
31340a96aa3bSJed Brown       next = next->next;
31350a96aa3bSJed Brown       continue;
31360a96aa3bSJed Brown     }
31379566063dSJacob Faibussowitsch     PetscCall(PetscStrcmp(name, "vtk", &isVTK));
31380a96aa3bSJed Brown     if (isVTK) {
31390a96aa3bSJed Brown       next = next->next;
31400a96aa3bSJed Brown       continue;
31410a96aa3bSJed Brown     }
31429566063dSJacob Faibussowitsch     PetscCall(PetscStrcmp(name, "_forest_base_subpoint_map", &isSpmap));
31430a96aa3bSJed Brown     if (!isSpmap) {
31449566063dSJacob Faibussowitsch       PetscCall(DMGetLabel(base, name, &baseLabel));
31450a96aa3bSJed Brown       if (!baseLabel) {
31460a96aa3bSJed Brown         next = next->next;
31470a96aa3bSJed Brown         continue;
31480a96aa3bSJed Brown       }
31499566063dSJacob Faibussowitsch       PetscCall(DMLabelCreateIndex(baseLabel, pStartBase, pEndBase));
31500a96aa3bSJed Brown     } else baseLabel = NULL;
31510a96aa3bSJed Brown 
31520a96aa3bSJed Brown     for (p = pStart; p < pEnd; p++) {
31530a96aa3bSJed Brown       PetscInt          s, c = -1, l;
31540a96aa3bSJed Brown       PetscInt         *closure = NULL, closureSize;
31550a96aa3bSJed Brown       p4est_quadrant_t *ghosts  = (p4est_quadrant_t *)pforest->ghost->ghosts.array;
31560a96aa3bSJed Brown       p4est_tree_t     *trees   = (p4est_tree_t *)pforest->forest->trees->array;
31570a96aa3bSJed Brown       p4est_quadrant_t *q;
31580a96aa3bSJed Brown       PetscInt          t, val;
31590a96aa3bSJed Brown       PetscBool         zerosupportpoint = PETSC_FALSE;
31600a96aa3bSJed Brown 
31619566063dSJacob Faibussowitsch       PetscCall(DMPlexGetTransitiveClosure(plex, p, PETSC_FALSE, &starSize, &star));
31620a96aa3bSJed Brown       for (s = 0; s < starSize; s++) {
31630a96aa3bSJed Brown         PetscInt point = star[2 * s];
31640a96aa3bSJed Brown 
31650a96aa3bSJed Brown         if (cStart <= point && point < cEnd) {
31669566063dSJacob Faibussowitsch           PetscCall(DMPlexGetTransitiveClosure(plex, point, PETSC_TRUE, &closureSize, &closure));
31670a96aa3bSJed Brown           for (l = 0; l < closureSize; l++) {
31680a96aa3bSJed Brown             PetscInt qParent = closure[2 * l], q, pp = p, pParent = p;
31690a96aa3bSJed Brown             do { /* check parents of q */
31700a96aa3bSJed Brown               q = qParent;
31710a96aa3bSJed Brown               if (q == p) {
31720a96aa3bSJed Brown                 c = point;
31730a96aa3bSJed Brown                 break;
31740a96aa3bSJed Brown               }
31759566063dSJacob Faibussowitsch               PetscCall(DMPlexGetTreeParent(plex, q, &qParent, NULL));
31760a96aa3bSJed Brown             } while (qParent != q);
31770a96aa3bSJed Brown             if (c != -1) break;
31789566063dSJacob Faibussowitsch             PetscCall(DMPlexGetTreeParent(plex, pp, &pParent, NULL));
31790a96aa3bSJed Brown             q = closure[2 * l];
31800a96aa3bSJed Brown             while (pParent != pp) { /* check parents of p */
31810a96aa3bSJed Brown               pp = pParent;
31820a96aa3bSJed Brown               if (pp == q) {
31830a96aa3bSJed Brown                 c = point;
31840a96aa3bSJed Brown                 break;
31850a96aa3bSJed Brown               }
31869566063dSJacob Faibussowitsch               PetscCall(DMPlexGetTreeParent(plex, pp, &pParent, NULL));
31870a96aa3bSJed Brown             }
31880a96aa3bSJed Brown             if (c != -1) break;
31890a96aa3bSJed Brown           }
31909566063dSJacob Faibussowitsch           PetscCall(DMPlexRestoreTransitiveClosure(plex, point, PETSC_TRUE, NULL, &closure));
31910a96aa3bSJed Brown           if (l < closureSize) break;
31920a96aa3bSJed Brown         } else {
31930a96aa3bSJed Brown           PetscInt supportSize;
31940a96aa3bSJed Brown 
31959566063dSJacob Faibussowitsch           PetscCall(DMPlexGetSupportSize(plex, point, &supportSize));
31960a96aa3bSJed Brown           zerosupportpoint = (PetscBool)(zerosupportpoint || !supportSize);
31970a96aa3bSJed Brown         }
31980a96aa3bSJed Brown       }
31990a96aa3bSJed Brown       if (c < 0) {
32000a96aa3bSJed Brown         const char *prefix;
32010a96aa3bSJed Brown         PetscBool   print = PETSC_FALSE;
32020a96aa3bSJed Brown 
32039566063dSJacob Faibussowitsch         PetscCall(PetscObjectGetOptionsPrefix((PetscObject)dm, &prefix));
32049566063dSJacob Faibussowitsch         PetscCall(PetscOptionsGetBool(((PetscObject)dm)->options, prefix, "-dm_forest_print_label_error", &print, NULL));
32050a96aa3bSJed Brown         if (print) {
32060a96aa3bSJed Brown           PetscInt i;
32070a96aa3bSJed Brown 
320863a3b9bcSJacob Faibussowitsch           PetscCall(PetscPrintf(PETSC_COMM_SELF, "[%d] Failed to find cell with point %" PetscInt_FMT " in its closure for label %s (starSize %" PetscInt_FMT ")\n", PetscGlobalRank, p, baseLabel ? ((PetscObject)baseLabel)->name : "_forest_base_subpoint_map", starSize));
320963a3b9bcSJacob Faibussowitsch           for (i = 0; i < starSize; i++) PetscCall(PetscPrintf(PETSC_COMM_SELF, "  star[%" PetscInt_FMT "] = %" PetscInt_FMT ",%" PetscInt_FMT "\n", i, star[2 * i], star[2 * i + 1]));
32100a96aa3bSJed Brown         }
32119566063dSJacob Faibussowitsch         PetscCall(DMPlexRestoreTransitiveClosure(plex, p, PETSC_FALSE, NULL, &star));
32120a96aa3bSJed Brown         if (zerosupportpoint) continue;
32139371c9d4SSatish Balay         else
32149371c9d4SSatish Balay           SETERRQ(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Failed to find cell with point %" PetscInt_FMT " in its closure for label %s. Rerun with -dm_forest_print_label_error for more information", p, baseLabel ? ((PetscObject)baseLabel)->name : "_forest_base_subpoint_map");
32150a96aa3bSJed Brown       }
32169566063dSJacob Faibussowitsch       PetscCall(DMPlexRestoreTransitiveClosure(plex, p, PETSC_FALSE, NULL, &star));
32170a96aa3bSJed Brown 
32180a96aa3bSJed Brown       if (c < cLocalStart) {
32190a96aa3bSJed Brown         /* get from the beginning of the ghost layer */
3220f4f49eeaSPierre Jolivet         q = &ghosts[c];
32210a96aa3bSJed Brown         t = (PetscInt)q->p.which_tree;
32220a96aa3bSJed Brown       } else if (c < cLocalEnd) {
32230a96aa3bSJed Brown         PetscInt lo = 0, hi = num_trees;
32240a96aa3bSJed Brown         /* get from local quadrants: have to find the right tree */
32250a96aa3bSJed Brown 
32260a96aa3bSJed Brown         c -= cLocalStart;
32270a96aa3bSJed Brown 
32280a96aa3bSJed Brown         do {
32290a96aa3bSJed Brown           p4est_tree_t *tree;
32300a96aa3bSJed Brown 
32311dca8a05SBarry Smith           PetscCheck(guess >= lo && guess < num_trees && lo < hi, PETSC_COMM_SELF, PETSC_ERR_PLIB, "failed binary search");
32320a96aa3bSJed Brown           tree = &trees[guess];
32330a96aa3bSJed Brown           if (c < tree->quadrants_offset) {
32340a96aa3bSJed Brown             hi = guess;
32350a96aa3bSJed Brown           } else if (c < tree->quadrants_offset + (PetscInt)tree->quadrants.elem_count) {
32360a96aa3bSJed Brown             q = &((p4est_quadrant_t *)tree->quadrants.array)[c - (PetscInt)tree->quadrants_offset];
32370a96aa3bSJed Brown             t = guess;
32380a96aa3bSJed Brown             break;
32390a96aa3bSJed Brown           } else {
32400a96aa3bSJed Brown             lo = guess + 1;
32410a96aa3bSJed Brown           }
32420a96aa3bSJed Brown           guess = lo + (hi - lo) / 2;
32430a96aa3bSJed Brown         } while (1);
32440a96aa3bSJed Brown       } else {
32450a96aa3bSJed Brown         /* get from the end of the ghost layer */
32460a96aa3bSJed Brown         c -= (cLocalEnd - cLocalStart);
32470a96aa3bSJed Brown 
3248f4f49eeaSPierre Jolivet         q = &ghosts[c];
32490a96aa3bSJed Brown         t = (PetscInt)q->p.which_tree;
32500a96aa3bSJed Brown       }
32510a96aa3bSJed Brown 
32520a96aa3bSJed Brown       if (l == 0) { /* cell */
32530a96aa3bSJed Brown         if (baseLabel) {
32549566063dSJacob Faibussowitsch           PetscCall(DMLabelGetValue(baseLabel, t + cStartBase, &val));
32550a96aa3bSJed Brown         } else {
32560a96aa3bSJed Brown           val = t + cStartBase;
32570a96aa3bSJed Brown         }
32589566063dSJacob Faibussowitsch         PetscCall(DMLabelSetValue(label, p, val));
32590a96aa3bSJed Brown       } else if (l >= 1 && l < 1 + P4EST_FACES) { /* facet */
32600a96aa3bSJed Brown         p4est_quadrant_t nq;
32610a96aa3bSJed Brown         int              isInside;
32620a96aa3bSJed Brown 
32630a96aa3bSJed Brown         l = PetscFaceToP4estFace[l - 1];
3264792fecdfSBarry Smith         PetscCallP4est(p4est_quadrant_face_neighbor, (q, l, &nq));
3265792fecdfSBarry Smith         PetscCallP4estReturn(isInside, p4est_quadrant_is_inside_root, (&nq));
32660a96aa3bSJed Brown         if (isInside) {
32670a96aa3bSJed Brown           /* this facet is in the interior of a tree, so it inherits the label of the tree */
32680a96aa3bSJed Brown           if (baseLabel) {
32699566063dSJacob Faibussowitsch             PetscCall(DMLabelGetValue(baseLabel, t + cStartBase, &val));
32700a96aa3bSJed Brown           } else {
32710a96aa3bSJed Brown             val = t + cStartBase;
32720a96aa3bSJed Brown           }
32739566063dSJacob Faibussowitsch           PetscCall(DMLabelSetValue(label, p, val));
32740a96aa3bSJed Brown         } else {
32750a96aa3bSJed Brown           PetscInt f = pforest->topo->tree_face_to_uniq[P4EST_FACES * t + l];
32760a96aa3bSJed Brown 
32770a96aa3bSJed Brown           if (baseLabel) {
32789566063dSJacob Faibussowitsch             PetscCall(DMLabelGetValue(baseLabel, f + fStartBase, &val));
32790a96aa3bSJed Brown           } else {
32800a96aa3bSJed Brown             val = f + fStartBase;
32810a96aa3bSJed Brown           }
32829566063dSJacob Faibussowitsch           PetscCall(DMLabelSetValue(label, p, val));
32830a96aa3bSJed Brown         }
32840a96aa3bSJed Brown   #if defined(P4_TO_P8)
32850a96aa3bSJed Brown       } else if (l >= 1 + P4EST_FACES && l < 1 + P4EST_FACES + P8EST_EDGES) { /* edge */
32860a96aa3bSJed Brown         p4est_quadrant_t nq;
32870a96aa3bSJed Brown         int              isInside;
32880a96aa3bSJed Brown 
32890a96aa3bSJed Brown         l = PetscEdgeToP4estEdge[l - (1 + P4EST_FACES)];
3290792fecdfSBarry Smith         PetscCallP4est(p8est_quadrant_edge_neighbor, (q, l, &nq));
3291792fecdfSBarry Smith         PetscCallP4estReturn(isInside, p4est_quadrant_is_inside_root, (&nq));
32920a96aa3bSJed Brown         if (isInside) {
32930a96aa3bSJed Brown           /* this edge is in the interior of a tree, so it inherits the label of the tree */
32940a96aa3bSJed Brown           if (baseLabel) {
32959566063dSJacob Faibussowitsch             PetscCall(DMLabelGetValue(baseLabel, t + cStartBase, &val));
32960a96aa3bSJed Brown           } else {
32970a96aa3bSJed Brown             val = t + cStartBase;
32980a96aa3bSJed Brown           }
32999566063dSJacob Faibussowitsch           PetscCall(DMLabelSetValue(label, p, val));
33000a96aa3bSJed Brown         } else {
33010a96aa3bSJed Brown           int isOutsideFace;
33020a96aa3bSJed Brown 
3303792fecdfSBarry Smith           PetscCallP4estReturn(isOutsideFace, p4est_quadrant_is_outside_face, (&nq));
33040a96aa3bSJed Brown           if (isOutsideFace) {
33050a96aa3bSJed Brown             PetscInt f;
33060a96aa3bSJed Brown 
33070a96aa3bSJed Brown             if (nq.x < 0) {
33080a96aa3bSJed Brown               f = 0;
33090a96aa3bSJed Brown             } else if (nq.x >= P4EST_ROOT_LEN) {
33100a96aa3bSJed Brown               f = 1;
33110a96aa3bSJed Brown             } else if (nq.y < 0) {
33120a96aa3bSJed Brown               f = 2;
33130a96aa3bSJed Brown             } else if (nq.y >= P4EST_ROOT_LEN) {
33140a96aa3bSJed Brown               f = 3;
33150a96aa3bSJed Brown             } else if (nq.z < 0) {
33160a96aa3bSJed Brown               f = 4;
33170a96aa3bSJed Brown             } else {
33180a96aa3bSJed Brown               f = 5;
33190a96aa3bSJed Brown             }
33200a96aa3bSJed Brown             f = pforest->topo->tree_face_to_uniq[P4EST_FACES * t + f];
33210a96aa3bSJed Brown             if (baseLabel) {
33229566063dSJacob Faibussowitsch               PetscCall(DMLabelGetValue(baseLabel, f + fStartBase, &val));
33230a96aa3bSJed Brown             } else {
33240a96aa3bSJed Brown               val = f + fStartBase;
33250a96aa3bSJed Brown             }
33269566063dSJacob Faibussowitsch             PetscCall(DMLabelSetValue(label, p, val));
33270a96aa3bSJed Brown           } else { /* the quadrant edge corresponds to the tree edge */
33280a96aa3bSJed Brown             PetscInt e = pforest->topo->conn->tree_to_edge[P8EST_EDGES * t + l];
33290a96aa3bSJed Brown 
33300a96aa3bSJed Brown             if (baseLabel) {
33319566063dSJacob Faibussowitsch               PetscCall(DMLabelGetValue(baseLabel, e + eStartBase, &val));
33320a96aa3bSJed Brown             } else {
33330a96aa3bSJed Brown               val = e + eStartBase;
33340a96aa3bSJed Brown             }
33359566063dSJacob Faibussowitsch             PetscCall(DMLabelSetValue(label, p, val));
33360a96aa3bSJed Brown           }
33370a96aa3bSJed Brown         }
33380a96aa3bSJed Brown   #endif
33390a96aa3bSJed Brown       } else { /* vertex */
33400a96aa3bSJed Brown         p4est_quadrant_t nq;
33410a96aa3bSJed Brown         int              isInside;
33420a96aa3bSJed Brown 
33430a96aa3bSJed Brown   #if defined(P4_TO_P8)
33440a96aa3bSJed Brown         l = PetscVertToP4estVert[l - (1 + P4EST_FACES + P8EST_EDGES)];
33450a96aa3bSJed Brown   #else
33460a96aa3bSJed Brown         l = PetscVertToP4estVert[l - (1 + P4EST_FACES)];
33470a96aa3bSJed Brown   #endif
3348792fecdfSBarry Smith         PetscCallP4est(p4est_quadrant_corner_neighbor, (q, l, &nq));
3349792fecdfSBarry Smith         PetscCallP4estReturn(isInside, p4est_quadrant_is_inside_root, (&nq));
33500a96aa3bSJed Brown         if (isInside) {
33510a96aa3bSJed Brown           if (baseLabel) {
33529566063dSJacob Faibussowitsch             PetscCall(DMLabelGetValue(baseLabel, t + cStartBase, &val));
33530a96aa3bSJed Brown           } else {
33540a96aa3bSJed Brown             val = t + cStartBase;
33550a96aa3bSJed Brown           }
33569566063dSJacob Faibussowitsch           PetscCall(DMLabelSetValue(label, p, val));
33570a96aa3bSJed Brown         } else {
33580a96aa3bSJed Brown           int isOutside;
33590a96aa3bSJed Brown 
3360792fecdfSBarry Smith           PetscCallP4estReturn(isOutside, p4est_quadrant_is_outside_face, (&nq));
33610a96aa3bSJed Brown           if (isOutside) {
33620a96aa3bSJed Brown             PetscInt f = -1;
33630a96aa3bSJed Brown 
33640a96aa3bSJed Brown             if (nq.x < 0) {
33650a96aa3bSJed Brown               f = 0;
33660a96aa3bSJed Brown             } else if (nq.x >= P4EST_ROOT_LEN) {
33670a96aa3bSJed Brown               f = 1;
33680a96aa3bSJed Brown             } else if (nq.y < 0) {
33690a96aa3bSJed Brown               f = 2;
33700a96aa3bSJed Brown             } else if (nq.y >= P4EST_ROOT_LEN) {
33710a96aa3bSJed Brown               f = 3;
33720a96aa3bSJed Brown   #if defined(P4_TO_P8)
33730a96aa3bSJed Brown             } else if (nq.z < 0) {
33740a96aa3bSJed Brown               f = 4;
33750a96aa3bSJed Brown             } else {
33760a96aa3bSJed Brown               f = 5;
33770a96aa3bSJed Brown   #endif
33780a96aa3bSJed Brown             }
33790a96aa3bSJed Brown             f = pforest->topo->tree_face_to_uniq[P4EST_FACES * t + f];
33800a96aa3bSJed Brown             if (baseLabel) {
33819566063dSJacob Faibussowitsch               PetscCall(DMLabelGetValue(baseLabel, f + fStartBase, &val));
33820a96aa3bSJed Brown             } else {
33830a96aa3bSJed Brown               val = f + fStartBase;
33840a96aa3bSJed Brown             }
33859566063dSJacob Faibussowitsch             PetscCall(DMLabelSetValue(label, p, val));
33860a96aa3bSJed Brown             continue;
33870a96aa3bSJed Brown           }
33880a96aa3bSJed Brown   #if defined(P4_TO_P8)
3389792fecdfSBarry Smith           PetscCallP4estReturn(isOutside, p8est_quadrant_is_outside_edge, (&nq));
33900a96aa3bSJed Brown           if (isOutside) {
33910a96aa3bSJed Brown             /* outside edge */
33920a96aa3bSJed Brown             PetscInt e = -1;
33930a96aa3bSJed Brown 
33940a96aa3bSJed Brown             if (nq.x >= 0 && nq.x < P4EST_ROOT_LEN) {
33950a96aa3bSJed Brown               if (nq.z < 0) {
33960a96aa3bSJed Brown                 if (nq.y < 0) {
33970a96aa3bSJed Brown                   e = 0;
33980a96aa3bSJed Brown                 } else {
33990a96aa3bSJed Brown                   e = 1;
34000a96aa3bSJed Brown                 }
34010a96aa3bSJed Brown               } else {
34020a96aa3bSJed Brown                 if (nq.y < 0) {
34030a96aa3bSJed Brown                   e = 2;
34040a96aa3bSJed Brown                 } else {
34050a96aa3bSJed Brown                   e = 3;
34060a96aa3bSJed Brown                 }
34070a96aa3bSJed Brown               }
34080a96aa3bSJed Brown             } else if (nq.y >= 0 && nq.y < P4EST_ROOT_LEN) {
34090a96aa3bSJed Brown               if (nq.z < 0) {
34100a96aa3bSJed Brown                 if (nq.x < 0) {
34110a96aa3bSJed Brown                   e = 4;
34120a96aa3bSJed Brown                 } else {
34130a96aa3bSJed Brown                   e = 5;
34140a96aa3bSJed Brown                 }
34150a96aa3bSJed Brown               } else {
34160a96aa3bSJed Brown                 if (nq.x < 0) {
34170a96aa3bSJed Brown                   e = 6;
34180a96aa3bSJed Brown                 } else {
34190a96aa3bSJed Brown                   e = 7;
34200a96aa3bSJed Brown                 }
34210a96aa3bSJed Brown               }
34220a96aa3bSJed Brown             } else {
34230a96aa3bSJed Brown               if (nq.y < 0) {
34240a96aa3bSJed Brown                 if (nq.x < 0) {
34250a96aa3bSJed Brown                   e = 8;
34260a96aa3bSJed Brown                 } else {
34270a96aa3bSJed Brown                   e = 9;
34280a96aa3bSJed Brown                 }
34290a96aa3bSJed Brown               } else {
34300a96aa3bSJed Brown                 if (nq.x < 0) {
34310a96aa3bSJed Brown                   e = 10;
34320a96aa3bSJed Brown                 } else {
34330a96aa3bSJed Brown                   e = 11;
34340a96aa3bSJed Brown                 }
34350a96aa3bSJed Brown               }
34360a96aa3bSJed Brown             }
34370a96aa3bSJed Brown 
34380a96aa3bSJed Brown             e = pforest->topo->conn->tree_to_edge[P8EST_EDGES * t + e];
34390a96aa3bSJed Brown             if (baseLabel) {
34409566063dSJacob Faibussowitsch               PetscCall(DMLabelGetValue(baseLabel, e + eStartBase, &val));
34410a96aa3bSJed Brown             } else {
34420a96aa3bSJed Brown               val = e + eStartBase;
34430a96aa3bSJed Brown             }
34449566063dSJacob Faibussowitsch             PetscCall(DMLabelSetValue(label, p, val));
34450a96aa3bSJed Brown             continue;
34460a96aa3bSJed Brown           }
34470a96aa3bSJed Brown   #endif
34480a96aa3bSJed Brown           {
34490a96aa3bSJed Brown             /* outside vertex: same corner as quadrant corner */
34500a96aa3bSJed Brown             PetscInt v = pforest->topo->conn->tree_to_corner[P4EST_CHILDREN * t + l];
34510a96aa3bSJed Brown 
34520a96aa3bSJed Brown             if (baseLabel) {
34539566063dSJacob Faibussowitsch               PetscCall(DMLabelGetValue(baseLabel, v + vStartBase, &val));
34540a96aa3bSJed Brown             } else {
34550a96aa3bSJed Brown               val = v + vStartBase;
34560a96aa3bSJed Brown             }
34579566063dSJacob Faibussowitsch             PetscCall(DMLabelSetValue(label, p, val));
34580a96aa3bSJed Brown           }
34590a96aa3bSJed Brown         }
34600a96aa3bSJed Brown       }
34610a96aa3bSJed Brown     }
34620a96aa3bSJed Brown     next = next->next;
34630a96aa3bSJed Brown   }
34643ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
34650a96aa3bSJed Brown }
34660a96aa3bSJed Brown 
DMPforestLabelsFinalize(DM dm,DM plex)3467d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPforestLabelsFinalize(DM dm, DM plex)
3468d71ae5a4SJacob Faibussowitsch {
34690a96aa3bSJed Brown   DM_Forest_pforest *pforest = (DM_Forest_pforest *)((DM_Forest *)dm->data)->data;
34700a96aa3bSJed Brown   DM                 adapt;
34710a96aa3bSJed Brown 
34720a96aa3bSJed Brown   PetscFunctionBegin;
34733ba16761SJacob Faibussowitsch   if (pforest->labelsFinalized) PetscFunctionReturn(PETSC_SUCCESS);
34740a96aa3bSJed Brown   pforest->labelsFinalized = PETSC_TRUE;
34759566063dSJacob Faibussowitsch   PetscCall(DMForestGetAdaptivityForest(dm, &adapt));
34760a96aa3bSJed Brown   if (!adapt) {
34770a96aa3bSJed Brown     /* Initialize labels from the base dm */
34789566063dSJacob Faibussowitsch     PetscCall(DMPforestLabelsInitialize(dm, plex));
34790a96aa3bSJed Brown   } else {
34800a96aa3bSJed Brown     PetscInt    dofPerDim[4] = {1, 1, 1, 1};
34810a96aa3bSJed Brown     PetscSF     transferForward, transferBackward, pointSF;
34820a96aa3bSJed Brown     PetscInt    pStart, pEnd, pStartA, pEndA;
34830a96aa3bSJed Brown     PetscInt   *values, *adaptValues;
34840a96aa3bSJed Brown     DMLabelLink next = adapt->labels;
34850a96aa3bSJed Brown     DMLabel     adaptLabel;
34860a96aa3bSJed Brown     DM          adaptPlex;
34870a96aa3bSJed Brown 
34889566063dSJacob Faibussowitsch     PetscCall(DMForestGetAdaptivityLabel(dm, &adaptLabel));
34899566063dSJacob Faibussowitsch     PetscCall(DMPforestGetPlex(adapt, &adaptPlex));
34909566063dSJacob Faibussowitsch     PetscCall(DMPforestGetTransferSF(adapt, dm, dofPerDim, &transferForward, &transferBackward));
34919566063dSJacob Faibussowitsch     PetscCall(DMPlexGetChart(plex, &pStart, &pEnd));
34929566063dSJacob Faibussowitsch     PetscCall(DMPlexGetChart(adaptPlex, &pStartA, &pEndA));
34939566063dSJacob Faibussowitsch     PetscCall(PetscMalloc2(pEnd - pStart, &values, pEndA - pStartA, &adaptValues));
34949566063dSJacob Faibussowitsch     PetscCall(DMGetPointSF(plex, &pointSF));
34950a96aa3bSJed Brown     if (PetscDefined(USE_DEBUG)) {
34960a96aa3bSJed Brown       PetscInt p;
34970a96aa3bSJed Brown       for (p = pStartA; p < pEndA; p++) adaptValues[p - pStartA] = -1;
34980a96aa3bSJed Brown       for (p = pStart; p < pEnd; p++) values[p - pStart] = -2;
34990a96aa3bSJed Brown       if (transferForward) {
35009566063dSJacob Faibussowitsch         PetscCall(PetscSFBcastBegin(transferForward, MPIU_INT, adaptValues, values, MPI_REPLACE));
35019566063dSJacob Faibussowitsch         PetscCall(PetscSFBcastEnd(transferForward, MPIU_INT, adaptValues, values, MPI_REPLACE));
35020a96aa3bSJed Brown       }
35030a96aa3bSJed Brown       if (transferBackward) {
350457168dbeSPierre Jolivet         PetscCall(PetscSFReduceBegin(transferBackward, MPIU_INT, adaptValues, values, MPI_MAX));
350557168dbeSPierre Jolivet         PetscCall(PetscSFReduceEnd(transferBackward, MPIU_INT, adaptValues, values, MPI_MAX));
35060a96aa3bSJed Brown       }
35070a96aa3bSJed Brown       for (p = pStart; p < pEnd; p++) {
35080a96aa3bSJed Brown         PetscInt q = p, parent;
35090a96aa3bSJed Brown 
35109566063dSJacob Faibussowitsch         PetscCall(DMPlexGetTreeParent(plex, q, &parent, NULL));
35110a96aa3bSJed Brown         while (parent != q) {
35120a96aa3bSJed Brown           if (values[parent] == -2) values[parent] = values[q];
35130a96aa3bSJed Brown           q = parent;
35149566063dSJacob Faibussowitsch           PetscCall(DMPlexGetTreeParent(plex, q, &parent, NULL));
35150a96aa3bSJed Brown         }
35160a96aa3bSJed Brown       }
351757168dbeSPierre Jolivet       PetscCall(PetscSFReduceBegin(pointSF, MPIU_INT, values, values, MPI_MAX));
351857168dbeSPierre Jolivet       PetscCall(PetscSFReduceEnd(pointSF, MPIU_INT, values, values, MPI_MAX));
35199566063dSJacob Faibussowitsch       PetscCall(PetscSFBcastBegin(pointSF, MPIU_INT, values, values, MPI_REPLACE));
35209566063dSJacob Faibussowitsch       PetscCall(PetscSFBcastEnd(pointSF, MPIU_INT, values, values, MPI_REPLACE));
3521ad540459SPierre Jolivet       for (p = pStart; p < pEnd; p++) PetscCheck(values[p - pStart] != -2, PETSC_COMM_SELF, PETSC_ERR_PLIB, "uncovered point %" PetscInt_FMT, p);
35220a96aa3bSJed Brown     }
35230a96aa3bSJed Brown     while (next) {
35240a96aa3bSJed Brown       DMLabel     nextLabel = next->label;
35250a96aa3bSJed Brown       const char *name;
35260a96aa3bSJed Brown       PetscBool   isDepth, isCellType, isGhost, isVTK;
35270a96aa3bSJed Brown       DMLabel     label;
35280a96aa3bSJed Brown       PetscInt    p;
35290a96aa3bSJed Brown 
35309566063dSJacob Faibussowitsch       PetscCall(PetscObjectGetName((PetscObject)nextLabel, &name));
35319566063dSJacob Faibussowitsch       PetscCall(PetscStrcmp(name, "depth", &isDepth));
35320a96aa3bSJed Brown       if (isDepth) {
35330a96aa3bSJed Brown         next = next->next;
35340a96aa3bSJed Brown         continue;
35350a96aa3bSJed Brown       }
35369566063dSJacob Faibussowitsch       PetscCall(PetscStrcmp(name, "celltype", &isCellType));
35370a96aa3bSJed Brown       if (isCellType) {
35380a96aa3bSJed Brown         next = next->next;
35390a96aa3bSJed Brown         continue;
35400a96aa3bSJed Brown       }
35419566063dSJacob Faibussowitsch       PetscCall(PetscStrcmp(name, "ghost", &isGhost));
35420a96aa3bSJed Brown       if (isGhost) {
35430a96aa3bSJed Brown         next = next->next;
35440a96aa3bSJed Brown         continue;
35450a96aa3bSJed Brown       }
35469566063dSJacob Faibussowitsch       PetscCall(PetscStrcmp(name, "vtk", &isVTK));
35470a96aa3bSJed Brown       if (isVTK) {
35480a96aa3bSJed Brown         next = next->next;
35490a96aa3bSJed Brown         continue;
35500a96aa3bSJed Brown       }
35510a96aa3bSJed Brown       if (nextLabel == adaptLabel) {
35520a96aa3bSJed Brown         next = next->next;
35530a96aa3bSJed Brown         continue;
35540a96aa3bSJed Brown       }
35550a96aa3bSJed Brown       /* label was created earlier */
35569566063dSJacob Faibussowitsch       PetscCall(DMGetLabel(dm, name, &label));
355748a46eb9SPierre Jolivet       for (p = pStartA; p < pEndA; p++) PetscCall(DMLabelGetValue(nextLabel, p, &adaptValues[p]));
35581690c2aeSBarry Smith       for (p = pStart; p < pEnd; p++) values[p] = PETSC_INT_MIN;
35590a96aa3bSJed Brown 
35601baa6e33SBarry Smith       if (transferForward) PetscCall(PetscSFBcastBegin(transferForward, MPIU_INT, adaptValues, values, MPI_REPLACE));
356157168dbeSPierre Jolivet       if (transferBackward) PetscCall(PetscSFReduceBegin(transferBackward, MPIU_INT, adaptValues, values, MPI_MAX));
35621baa6e33SBarry Smith       if (transferForward) PetscCall(PetscSFBcastEnd(transferForward, MPIU_INT, adaptValues, values, MPI_REPLACE));
356357168dbeSPierre Jolivet       if (transferBackward) PetscCall(PetscSFReduceEnd(transferBackward, MPIU_INT, adaptValues, values, MPI_MAX));
35640a96aa3bSJed Brown       for (p = pStart; p < pEnd; p++) {
35650a96aa3bSJed Brown         PetscInt q = p, parent;
35660a96aa3bSJed Brown 
35679566063dSJacob Faibussowitsch         PetscCall(DMPlexGetTreeParent(plex, q, &parent, NULL));
35680a96aa3bSJed Brown         while (parent != q) {
35691690c2aeSBarry Smith           if (values[parent] == PETSC_INT_MIN) values[parent] = values[q];
35700a96aa3bSJed Brown           q = parent;
35719566063dSJacob Faibussowitsch           PetscCall(DMPlexGetTreeParent(plex, q, &parent, NULL));
35720a96aa3bSJed Brown         }
35730a96aa3bSJed Brown       }
357457168dbeSPierre Jolivet       PetscCall(PetscSFReduceBegin(pointSF, MPIU_INT, values, values, MPI_MAX));
357557168dbeSPierre Jolivet       PetscCall(PetscSFReduceEnd(pointSF, MPIU_INT, values, values, MPI_MAX));
35769566063dSJacob Faibussowitsch       PetscCall(PetscSFBcastBegin(pointSF, MPIU_INT, values, values, MPI_REPLACE));
35779566063dSJacob Faibussowitsch       PetscCall(PetscSFBcastEnd(pointSF, MPIU_INT, values, values, MPI_REPLACE));
35780a96aa3bSJed Brown 
357948a46eb9SPierre Jolivet       for (p = pStart; p < pEnd; p++) PetscCall(DMLabelSetValue(label, p, values[p]));
35800a96aa3bSJed Brown       next = next->next;
35810a96aa3bSJed Brown     }
35829566063dSJacob Faibussowitsch     PetscCall(PetscFree2(values, adaptValues));
35839566063dSJacob Faibussowitsch     PetscCall(PetscSFDestroy(&transferForward));
35849566063dSJacob Faibussowitsch     PetscCall(PetscSFDestroy(&transferBackward));
35850a96aa3bSJed Brown     pforest->labelsFinalized = PETSC_TRUE;
35860a96aa3bSJed Brown   }
35873ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
35880a96aa3bSJed Brown }
35890a96aa3bSJed Brown 
DMPforestMapCoordinates_Cell(DM plex,p4est_geometry_t * geom,PetscInt cell,p4est_quadrant_t * q,p4est_topidx_t t,p4est_connectivity_t * conn,PetscScalar * coords)3590d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPforestMapCoordinates_Cell(DM plex, p4est_geometry_t *geom, PetscInt cell, p4est_quadrant_t *q, p4est_topidx_t t, p4est_connectivity_t *conn, PetscScalar *coords)
3591d71ae5a4SJacob Faibussowitsch {
35920a96aa3bSJed Brown   PetscInt     closureSize, c, coordStart, coordEnd, coordDim;
35930a96aa3bSJed Brown   PetscInt    *closure = NULL;
35940a96aa3bSJed Brown   PetscSection coordSec;
35950a96aa3bSJed Brown 
35960a96aa3bSJed Brown   PetscFunctionBegin;
35979566063dSJacob Faibussowitsch   PetscCall(DMGetCoordinateSection(plex, &coordSec));
35989566063dSJacob Faibussowitsch   PetscCall(PetscSectionGetChart(coordSec, &coordStart, &coordEnd));
35999566063dSJacob Faibussowitsch   PetscCall(DMGetCoordinateDim(plex, &coordDim));
36009566063dSJacob Faibussowitsch   PetscCall(DMPlexGetTransitiveClosure(plex, cell, PETSC_TRUE, &closureSize, &closure));
36010a96aa3bSJed Brown   for (c = 0; c < closureSize; c++) {
36020a96aa3bSJed Brown     PetscInt point = closure[2 * c];
36030a96aa3bSJed Brown 
36040a96aa3bSJed Brown     if (point >= coordStart && point < coordEnd) {
36050a96aa3bSJed Brown       PetscInt dof, off;
36060a96aa3bSJed Brown       PetscInt nCoords, i;
36079566063dSJacob Faibussowitsch       PetscCall(PetscSectionGetDof(coordSec, point, &dof));
360808401ef6SPierre Jolivet       PetscCheck(dof % coordDim == 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Did not understand coordinate layout");
36090a96aa3bSJed Brown       nCoords = dof / coordDim;
36109566063dSJacob Faibussowitsch       PetscCall(PetscSectionGetOffset(coordSec, point, &off));
36110a96aa3bSJed Brown       for (i = 0; i < nCoords; i++) {
36120a96aa3bSJed Brown         PetscScalar *coord               = &coords[off + i * coordDim];
36130a96aa3bSJed Brown         double       coordP4est[3]       = {0.};
36140a96aa3bSJed Brown         double       coordP4estMapped[3] = {0.};
36150a96aa3bSJed Brown         PetscInt     j;
36160a96aa3bSJed Brown         PetscReal    treeCoords[P4EST_CHILDREN][3] = {{0.}};
36170a96aa3bSJed Brown         PetscReal    eta[3]                        = {0.};
36180a96aa3bSJed Brown         PetscInt     numRounds                     = 10;
36190a96aa3bSJed Brown         PetscReal    coordGuess[3]                 = {0.};
36200a96aa3bSJed Brown 
36210a96aa3bSJed Brown         eta[0] = (PetscReal)q->x / (PetscReal)P4EST_ROOT_LEN;
36220a96aa3bSJed Brown         eta[1] = (PetscReal)q->y / (PetscReal)P4EST_ROOT_LEN;
36230a96aa3bSJed Brown   #if defined(P4_TO_P8)
36240a96aa3bSJed Brown         eta[2] = (PetscReal)q->z / (PetscReal)P4EST_ROOT_LEN;
36250a96aa3bSJed Brown   #endif
36260a96aa3bSJed Brown 
36270a96aa3bSJed Brown         for (j = 0; j < P4EST_CHILDREN; j++) {
36280a96aa3bSJed Brown           PetscInt k;
36290a96aa3bSJed Brown 
36300a96aa3bSJed Brown           for (k = 0; k < 3; k++) treeCoords[j][k] = conn->vertices[3 * conn->tree_to_vertex[P4EST_CHILDREN * t + j] + k];
36310a96aa3bSJed Brown         }
36320a96aa3bSJed Brown 
36330a96aa3bSJed Brown         for (j = 0; j < P4EST_CHILDREN; j++) {
36340a96aa3bSJed Brown           PetscInt  k;
36350a96aa3bSJed Brown           PetscReal prod = 1.;
36360a96aa3bSJed Brown 
36370a96aa3bSJed Brown           for (k = 0; k < P4EST_DIM; k++) prod *= (j & (1 << k)) ? eta[k] : (1. - eta[k]);
36380a96aa3bSJed Brown           for (k = 0; k < 3; k++) coordGuess[k] += prod * treeCoords[j][k];
36390a96aa3bSJed Brown         }
36400a96aa3bSJed Brown 
36410a96aa3bSJed Brown         for (j = 0; j < numRounds; j++) {
36420a96aa3bSJed Brown           PetscInt dir;
36430a96aa3bSJed Brown 
36440a96aa3bSJed Brown           for (dir = 0; dir < P4EST_DIM; dir++) {
36450a96aa3bSJed Brown             PetscInt  k;
36460a96aa3bSJed Brown             PetscReal diff[3];
36470a96aa3bSJed Brown             PetscReal dXdeta[3] = {0.};
36480a96aa3bSJed Brown             PetscReal rhs, scale, update;
36490a96aa3bSJed Brown 
36500a96aa3bSJed Brown             for (k = 0; k < 3; k++) diff[k] = coordP4est[k] - coordGuess[k];
36510a96aa3bSJed Brown             for (k = 0; k < P4EST_CHILDREN; k++) {
36520a96aa3bSJed Brown               PetscInt  l;
36530a96aa3bSJed Brown               PetscReal prod = 1.;
36540a96aa3bSJed Brown 
36550a96aa3bSJed Brown               for (l = 0; l < P4EST_DIM; l++) {
36560a96aa3bSJed Brown                 if (l == dir) {
36570a96aa3bSJed Brown                   prod *= (k & (1 << l)) ? 1. : -1.;
36580a96aa3bSJed Brown                 } else {
36590a96aa3bSJed Brown                   prod *= (k & (1 << l)) ? eta[l] : (1. - eta[l]);
36600a96aa3bSJed Brown                 }
36610a96aa3bSJed Brown               }
36620a96aa3bSJed Brown               for (l = 0; l < 3; l++) dXdeta[l] += prod * treeCoords[k][l];
36630a96aa3bSJed Brown             }
36640a96aa3bSJed Brown             rhs   = 0.;
36650a96aa3bSJed Brown             scale = 0;
36660a96aa3bSJed Brown             for (k = 0; k < 3; k++) {
36670a96aa3bSJed Brown               rhs += diff[k] * dXdeta[k];
36680a96aa3bSJed Brown               scale += dXdeta[k] * dXdeta[k];
36690a96aa3bSJed Brown             }
36700a96aa3bSJed Brown             update = rhs / scale;
36710a96aa3bSJed Brown             eta[dir] += update;
36720a96aa3bSJed Brown             eta[dir] = PetscMin(eta[dir], 1.);
36730a96aa3bSJed Brown             eta[dir] = PetscMax(eta[dir], 0.);
36740a96aa3bSJed Brown 
36750a96aa3bSJed Brown             coordGuess[0] = coordGuess[1] = coordGuess[2] = 0.;
36760a96aa3bSJed Brown             for (k = 0; k < P4EST_CHILDREN; k++) {
36770a96aa3bSJed Brown               PetscInt  l;
36780a96aa3bSJed Brown               PetscReal prod = 1.;
36790a96aa3bSJed Brown 
36800a96aa3bSJed Brown               for (l = 0; l < P4EST_DIM; l++) prod *= (k & (1 << l)) ? eta[l] : (1. - eta[l]);
36810a96aa3bSJed Brown               for (l = 0; l < 3; l++) coordGuess[l] += prod * treeCoords[k][l];
36820a96aa3bSJed Brown             }
36830a96aa3bSJed Brown           }
36840a96aa3bSJed Brown         }
36850a96aa3bSJed Brown         for (j = 0; j < 3; j++) coordP4est[j] = (double)eta[j];
36860a96aa3bSJed Brown 
3687966bd95aSPierre Jolivet         PetscCheck(geom, PETSC_COMM_SELF, PETSC_ERR_SUP, "Not coded");
36880a96aa3bSJed Brown         (geom->X)(geom, t, coordP4est, coordP4estMapped);
36890a96aa3bSJed Brown         for (j = 0; j < coordDim; j++) coord[j] = (PetscScalar)coordP4estMapped[j];
36900a96aa3bSJed Brown       }
36910a96aa3bSJed Brown     }
36920a96aa3bSJed Brown   }
36939566063dSJacob Faibussowitsch   PetscCall(DMPlexRestoreTransitiveClosure(plex, cell, PETSC_TRUE, &closureSize, &closure));
36943ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
36950a96aa3bSJed Brown }
36960a96aa3bSJed Brown 
DMPforestMapCoordinates(DM dm,DM plex)3697d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPforestMapCoordinates(DM dm, DM plex)
3698d71ae5a4SJacob Faibussowitsch {
36990a96aa3bSJed Brown   DM_Forest         *forest;
37000a96aa3bSJed Brown   DM_Forest_pforest *pforest;
37010a96aa3bSJed Brown   p4est_geometry_t  *geom;
37020a96aa3bSJed Brown   PetscInt           cLocalStart, cLocalEnd;
37030a96aa3bSJed Brown   Vec                coordLocalVec;
37040a96aa3bSJed Brown   PetscScalar       *coords;
37050a96aa3bSJed Brown   p4est_topidx_t     flt, llt, t;
37060a96aa3bSJed Brown   p4est_tree_t      *trees;
37070a96aa3bSJed Brown   PetscErrorCode (*map)(DM, PetscInt, PetscInt, const PetscReal[], PetscReal[], void *);
37080a96aa3bSJed Brown   void *mapCtx;
37090a96aa3bSJed Brown 
37100a96aa3bSJed Brown   PetscFunctionBegin;
37110a96aa3bSJed Brown   forest  = (DM_Forest *)dm->data;
37120a96aa3bSJed Brown   pforest = (DM_Forest_pforest *)forest->data;
37130a96aa3bSJed Brown   geom    = pforest->topo->geom;
37149566063dSJacob Faibussowitsch   PetscCall(DMForestGetBaseCoordinateMapping(dm, &map, &mapCtx));
37153ba16761SJacob Faibussowitsch   if (!geom && !map) PetscFunctionReturn(PETSC_SUCCESS);
37169566063dSJacob Faibussowitsch   PetscCall(DMGetCoordinatesLocal(plex, &coordLocalVec));
37179566063dSJacob Faibussowitsch   PetscCall(VecGetArray(coordLocalVec, &coords));
37180a96aa3bSJed Brown   cLocalStart = pforest->cLocalStart;
37190a96aa3bSJed Brown   cLocalEnd   = pforest->cLocalEnd;
37200a96aa3bSJed Brown   flt         = pforest->forest->first_local_tree;
37210a96aa3bSJed Brown   llt         = pforest->forest->last_local_tree;
37220a96aa3bSJed Brown   trees       = (p4est_tree_t *)pforest->forest->trees->array;
37230a96aa3bSJed Brown   if (map) { /* apply the map directly to the existing coordinates */
37240a96aa3bSJed Brown     PetscSection coordSec;
37250a96aa3bSJed Brown     PetscInt     coordStart, coordEnd, p, coordDim, p4estCoordDim, cStart, cEnd, cEndInterior;
37260a96aa3bSJed Brown     DM           base;
37270a96aa3bSJed Brown 
37289566063dSJacob Faibussowitsch     PetscCall(DMPlexGetHeightStratum(plex, 0, &cStart, &cEnd));
37292827ebadSStefano Zampini     PetscCall(DMPlexGetCellTypeStratum(plex, DM_POLYTOPE_FV_GHOST, &cEndInterior, NULL));
37300a96aa3bSJed Brown     cEnd = cEndInterior < 0 ? cEnd : cEndInterior;
37319566063dSJacob Faibussowitsch     PetscCall(DMForestGetBaseDM(dm, &base));
37329566063dSJacob Faibussowitsch     PetscCall(DMGetCoordinateSection(plex, &coordSec));
37339566063dSJacob Faibussowitsch     PetscCall(PetscSectionGetChart(coordSec, &coordStart, &coordEnd));
37349566063dSJacob Faibussowitsch     PetscCall(DMGetCoordinateDim(plex, &coordDim));
37350a96aa3bSJed Brown     p4estCoordDim = PetscMin(coordDim, 3);
37360a96aa3bSJed Brown     for (p = coordStart; p < coordEnd; p++) {
37370a96aa3bSJed Brown       PetscInt *star = NULL, starSize;
37380a96aa3bSJed Brown       PetscInt  dof, off, cell = -1, coarsePoint = -1;
37390a96aa3bSJed Brown       PetscInt  nCoords, i;
37409566063dSJacob Faibussowitsch       PetscCall(PetscSectionGetDof(coordSec, p, &dof));
374108401ef6SPierre Jolivet       PetscCheck(dof % coordDim == 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Did not understand coordinate layout");
37420a96aa3bSJed Brown       nCoords = dof / coordDim;
37439566063dSJacob Faibussowitsch       PetscCall(PetscSectionGetOffset(coordSec, p, &off));
37449566063dSJacob Faibussowitsch       PetscCall(DMPlexGetTransitiveClosure(plex, p, PETSC_FALSE, &starSize, &star));
37450a96aa3bSJed Brown       for (i = 0; i < starSize; i++) {
37460a96aa3bSJed Brown         PetscInt point = star[2 * i];
37470a96aa3bSJed Brown 
37480a96aa3bSJed Brown         if (cStart <= point && point < cEnd) {
37490a96aa3bSJed Brown           cell = point;
37500a96aa3bSJed Brown           break;
37510a96aa3bSJed Brown         }
37520a96aa3bSJed Brown       }
37539566063dSJacob Faibussowitsch       PetscCall(DMPlexRestoreTransitiveClosure(plex, p, PETSC_FALSE, &starSize, &star));
37540a96aa3bSJed Brown       if (cell >= 0) {
37550a96aa3bSJed Brown         if (cell < cLocalStart) {
37560a96aa3bSJed Brown           p4est_quadrant_t *ghosts = (p4est_quadrant_t *)pforest->ghost->ghosts.array;
37570a96aa3bSJed Brown 
37580a96aa3bSJed Brown           coarsePoint = ghosts[cell].p.which_tree;
37590a96aa3bSJed Brown         } else if (cell < cLocalEnd) {
37600a96aa3bSJed Brown           cell -= cLocalStart;
37610a96aa3bSJed Brown           for (t = flt; t <= llt; t++) {
3762f4f49eeaSPierre Jolivet             p4est_tree_t *tree = &trees[t];
37630a96aa3bSJed Brown 
37640a96aa3bSJed Brown             if (cell >= tree->quadrants_offset && (size_t)cell < tree->quadrants_offset + tree->quadrants.elem_count) {
37650a96aa3bSJed Brown               coarsePoint = t;
37660a96aa3bSJed Brown               break;
37670a96aa3bSJed Brown             }
37680a96aa3bSJed Brown           }
37690a96aa3bSJed Brown         } else {
37700a96aa3bSJed Brown           p4est_quadrant_t *ghosts = (p4est_quadrant_t *)pforest->ghost->ghosts.array;
37710a96aa3bSJed Brown 
37720a96aa3bSJed Brown           coarsePoint = ghosts[cell - cLocalEnd].p.which_tree;
37730a96aa3bSJed Brown         }
37740a96aa3bSJed Brown       }
37750a96aa3bSJed Brown       for (i = 0; i < nCoords; i++) {
37760a96aa3bSJed Brown         PetscScalar *coord               = &coords[off + i * coordDim];
37770a96aa3bSJed Brown         PetscReal    coordP4est[3]       = {0.};
37780a96aa3bSJed Brown         PetscReal    coordP4estMapped[3] = {0.};
37790a96aa3bSJed Brown         PetscInt     j;
37800a96aa3bSJed Brown 
37810a96aa3bSJed Brown         for (j = 0; j < p4estCoordDim; j++) coordP4est[j] = PetscRealPart(coord[j]);
37829566063dSJacob Faibussowitsch         PetscCall((map)(base, coarsePoint, p4estCoordDim, coordP4est, coordP4estMapped, mapCtx));
37830a96aa3bSJed Brown         for (j = 0; j < p4estCoordDim; j++) coord[j] = (PetscScalar)coordP4estMapped[j];
37840a96aa3bSJed Brown       }
37850a96aa3bSJed Brown     }
37860a96aa3bSJed Brown   } else { /* we have to transform coordinates back to the unit cube (where geom is defined), and then apply geom */
37870a96aa3bSJed Brown     PetscInt cStart, cEnd, cEndInterior;
37880a96aa3bSJed Brown 
37899566063dSJacob Faibussowitsch     PetscCall(DMPlexGetHeightStratum(plex, 0, &cStart, &cEnd));
37902827ebadSStefano Zampini     PetscCall(DMPlexGetCellTypeStratum(plex, DM_POLYTOPE_FV_GHOST, &cEndInterior, NULL));
37910a96aa3bSJed Brown     cEnd = cEndInterior < 0 ? cEnd : cEndInterior;
37920a96aa3bSJed Brown     if (cLocalStart > 0) {
37930a96aa3bSJed Brown       p4est_quadrant_t *ghosts = (p4est_quadrant_t *)pforest->ghost->ghosts.array;
37940a96aa3bSJed Brown       PetscInt          count;
37950a96aa3bSJed Brown 
37960a96aa3bSJed Brown       for (count = 0; count < cLocalStart; count++) {
37970a96aa3bSJed Brown         p4est_quadrant_t *quad = &ghosts[count];
37980a96aa3bSJed Brown         p4est_topidx_t    t    = quad->p.which_tree;
37990a96aa3bSJed Brown 
38009566063dSJacob Faibussowitsch         PetscCall(DMPforestMapCoordinates_Cell(plex, geom, count, quad, t, pforest->topo->conn, coords));
38010a96aa3bSJed Brown       }
38020a96aa3bSJed Brown     }
38030a96aa3bSJed Brown     for (t = flt; t <= llt; t++) {
3804f4f49eeaSPierre Jolivet       p4est_tree_t     *tree     = &trees[t];
38050a96aa3bSJed Brown       PetscInt          offset   = cLocalStart + tree->quadrants_offset, i;
38060a96aa3bSJed Brown       PetscInt          numQuads = (PetscInt)tree->quadrants.elem_count;
38070a96aa3bSJed Brown       p4est_quadrant_t *quads    = (p4est_quadrant_t *)tree->quadrants.array;
38080a96aa3bSJed Brown 
38090a96aa3bSJed Brown       for (i = 0; i < numQuads; i++) {
38100a96aa3bSJed Brown         PetscInt count = i + offset;
38110a96aa3bSJed Brown 
38129566063dSJacob Faibussowitsch         PetscCall(DMPforestMapCoordinates_Cell(plex, geom, count, &quads[i], t, pforest->topo->conn, coords));
38130a96aa3bSJed Brown       }
38140a96aa3bSJed Brown     }
38150a96aa3bSJed Brown     if (cLocalEnd - cLocalStart < cEnd - cStart) {
38160a96aa3bSJed Brown       p4est_quadrant_t *ghosts    = (p4est_quadrant_t *)pforest->ghost->ghosts.array;
38170a96aa3bSJed Brown       PetscInt          numGhosts = (PetscInt)pforest->ghost->ghosts.elem_count;
38180a96aa3bSJed Brown       PetscInt          count;
38190a96aa3bSJed Brown 
38200a96aa3bSJed Brown       for (count = 0; count < numGhosts - cLocalStart; count++) {
38210a96aa3bSJed Brown         p4est_quadrant_t *quad = &ghosts[count + cLocalStart];
38220a96aa3bSJed Brown         p4est_topidx_t    t    = quad->p.which_tree;
38230a96aa3bSJed Brown 
38249566063dSJacob Faibussowitsch         PetscCall(DMPforestMapCoordinates_Cell(plex, geom, count + cLocalEnd, quad, t, pforest->topo->conn, coords));
38250a96aa3bSJed Brown       }
38260a96aa3bSJed Brown     }
38270a96aa3bSJed Brown   }
38289566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(coordLocalVec, &coords));
38293ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
38300a96aa3bSJed Brown }
38310a96aa3bSJed Brown 
PforestQuadrantIsInterior(p4est_quadrant_t * quad,PetscBool * is_interior)3832d71ae5a4SJacob Faibussowitsch static PetscErrorCode PforestQuadrantIsInterior(p4est_quadrant_t *quad, PetscBool *is_interior)
3833d71ae5a4SJacob Faibussowitsch {
3834852b71a7SToby Isaac   PetscFunctionBegin;
3835852b71a7SToby Isaac   p4est_qcoord_t h = P4EST_QUADRANT_LEN(quad->level);
3836852b71a7SToby Isaac   if ((quad->x > 0) && (quad->x + h < P4EST_ROOT_LEN)
3837852b71a7SToby Isaac   #ifdef P4_TO_P8
3838852b71a7SToby Isaac       && (quad->z > 0) && (quad->z + h < P4EST_ROOT_LEN)
3839852b71a7SToby Isaac   #endif
3840852b71a7SToby Isaac       && (quad->y > 0) && (quad->y + h < P4EST_ROOT_LEN)) {
3841852b71a7SToby Isaac     *is_interior = PETSC_TRUE;
3842852b71a7SToby Isaac   } else {
3843852b71a7SToby Isaac     *is_interior = PETSC_FALSE;
3844852b71a7SToby Isaac   }
38453ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3846852b71a7SToby Isaac }
3847852b71a7SToby Isaac 
3848852b71a7SToby Isaac /* We always use DG coordinates with p4est: if they do not match the vertex
3849852b71a7SToby Isaac    coordinates, add space for them in the section */
PforestCheckLocalizeCell(DM plex,PetscInt cDim,Vec cVecOld,DM_Forest_pforest * pforest,PetscSection oldSection,PetscSection newSection,PetscInt cell,PetscInt coarsePoint,p4est_quadrant_t * quad)3850d71ae5a4SJacob Faibussowitsch static PetscErrorCode PforestCheckLocalizeCell(DM plex, PetscInt cDim, Vec cVecOld, DM_Forest_pforest *pforest, PetscSection oldSection, PetscSection newSection, PetscInt cell, PetscInt coarsePoint, p4est_quadrant_t *quad)
3851d71ae5a4SJacob Faibussowitsch {
3852852b71a7SToby Isaac   PetscBool is_interior;
3853852b71a7SToby Isaac 
3854852b71a7SToby Isaac   PetscFunctionBegin;
3855852b71a7SToby Isaac   PetscCall(PforestQuadrantIsInterior(quad, &is_interior));
3856852b71a7SToby Isaac   if (is_interior) { // quads in the interior of a coarse cell can't touch periodic interfaces
3857852b71a7SToby Isaac     PetscCall(PetscSectionSetDof(newSection, cell, 0));
3858852b71a7SToby Isaac     PetscCall(PetscSectionSetFieldDof(newSection, cell, 0, 0));
3859852b71a7SToby Isaac   } else {
3860852b71a7SToby Isaac     PetscInt     cSize;
3861852b71a7SToby Isaac     PetscScalar *values      = NULL;
3862852b71a7SToby Isaac     PetscBool    same_coords = PETSC_TRUE;
3863852b71a7SToby Isaac 
3864852b71a7SToby Isaac     PetscCall(DMPlexVecGetClosure(plex, oldSection, cVecOld, cell, &cSize, &values));
3865852b71a7SToby Isaac     PetscAssert(cSize == cDim * P4EST_CHILDREN, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Unexpected closure size");
3866852b71a7SToby Isaac     for (int c = 0; c < P4EST_CHILDREN; c++) {
3867852b71a7SToby Isaac       p4est_qcoord_t quad_coords[3];
3868852b71a7SToby Isaac       p4est_qcoord_t h = P4EST_QUADRANT_LEN(quad->level);
3869852b71a7SToby Isaac       double         corner_coords[3];
3870852b71a7SToby Isaac       double         vert_coords[3];
3871852b71a7SToby Isaac       PetscInt       corner = PetscVertToP4estVert[c];
3872852b71a7SToby Isaac 
3873ad540459SPierre Jolivet       for (PetscInt d = 0; d < PetscMin(cDim, 3); d++) vert_coords[d] = PetscRealPart(values[c * cDim + d]);
3874852b71a7SToby Isaac 
3875852b71a7SToby Isaac       quad_coords[0] = quad->x;
3876852b71a7SToby Isaac       quad_coords[1] = quad->y;
3877852b71a7SToby Isaac   #ifdef P4_TO_P8
3878852b71a7SToby Isaac       quad_coords[2] = quad->z;
3879852b71a7SToby Isaac   #endif
3880ad540459SPierre Jolivet       for (int d = 0; d < 3; d++) quad_coords[d] += (corner & (1 << d)) ? h : 0;
3881*beceaeb6SBarry Smith   #if !defined(P4_TO_P8)
3882648bc8c4SBarry Smith       PetscCallP4est(p4est_qcoord_to_vertex, (pforest->forest->connectivity, coarsePoint, quad_coords[0], quad_coords[1], corner_coords));
3883852b71a7SToby Isaac   #else
3884648bc8c4SBarry Smith       PetscCallP4est(p4est_qcoord_to_vertex, (pforest->forest->connectivity, coarsePoint, quad_coords[0], quad_coords[1], quad_coords[2], corner_coords));
3885852b71a7SToby Isaac   #endif
3886852b71a7SToby Isaac       for (PetscInt d = 0; d < PetscMin(cDim, 3); d++) {
3887852b71a7SToby Isaac         if (fabs(vert_coords[d] - corner_coords[d]) > PETSC_SMALL) {
3888852b71a7SToby Isaac           same_coords = PETSC_FALSE;
3889852b71a7SToby Isaac           break;
3890852b71a7SToby Isaac         }
3891852b71a7SToby Isaac       }
3892852b71a7SToby Isaac     }
3893852b71a7SToby Isaac     if (same_coords) {
3894852b71a7SToby Isaac       PetscCall(PetscSectionSetDof(newSection, cell, 0));
3895852b71a7SToby Isaac       PetscCall(PetscSectionSetFieldDof(newSection, cell, 0, 0));
3896852b71a7SToby Isaac     } else {
3897852b71a7SToby Isaac       PetscCall(PetscSectionSetDof(newSection, cell, cSize));
3898852b71a7SToby Isaac       PetscCall(PetscSectionSetFieldDof(newSection, cell, 0, cSize));
3899852b71a7SToby Isaac     }
3900852b71a7SToby Isaac     PetscCall(DMPlexVecRestoreClosure(plex, oldSection, cVecOld, cell, &cSize, &values));
3901852b71a7SToby Isaac   }
39023ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3903852b71a7SToby Isaac }
3904852b71a7SToby Isaac 
PforestLocalizeCell(DM plex,PetscInt cDim,DM_Forest_pforest * pforest,PetscSection newSection,PetscInt cell,PetscInt coarsePoint,p4est_quadrant_t * quad,PetscScalar coords[])3905d71ae5a4SJacob Faibussowitsch static PetscErrorCode PforestLocalizeCell(DM plex, PetscInt cDim, DM_Forest_pforest *pforest, PetscSection newSection, PetscInt cell, PetscInt coarsePoint, p4est_quadrant_t *quad, PetscScalar coords[])
3906d71ae5a4SJacob Faibussowitsch {
3907852b71a7SToby Isaac   PetscInt cdof, off;
3908852b71a7SToby Isaac 
3909852b71a7SToby Isaac   PetscFunctionBegin;
3910852b71a7SToby Isaac   PetscCall(PetscSectionGetDof(newSection, cell, &cdof));
39113ba16761SJacob Faibussowitsch   if (!cdof) PetscFunctionReturn(PETSC_SUCCESS);
3912852b71a7SToby Isaac 
3913852b71a7SToby Isaac   PetscCall(PetscSectionGetOffset(newSection, cell, &off));
3914852b71a7SToby Isaac   for (PetscInt c = 0, pos = off; c < P4EST_CHILDREN; c++) {
3915852b71a7SToby Isaac     p4est_qcoord_t quad_coords[3];
3916852b71a7SToby Isaac     p4est_qcoord_t h = P4EST_QUADRANT_LEN(quad->level);
3917852b71a7SToby Isaac     double         corner_coords[3];
3918852b71a7SToby Isaac     PetscInt       corner = PetscVertToP4estVert[c];
3919852b71a7SToby Isaac 
3920852b71a7SToby Isaac     quad_coords[0] = quad->x;
3921852b71a7SToby Isaac     quad_coords[1] = quad->y;
3922852b71a7SToby Isaac   #ifdef P4_TO_P8
3923852b71a7SToby Isaac     quad_coords[2] = quad->z;
3924852b71a7SToby Isaac   #endif
3925ad540459SPierre Jolivet     for (int d = 0; d < 3; d++) quad_coords[d] += (corner & (1 << d)) ? h : 0;
3926*beceaeb6SBarry Smith   #if !defined(P4_TO_P8)
3927648bc8c4SBarry Smith     PetscCallP4est(p4est_qcoord_to_vertex, (pforest->forest->connectivity, coarsePoint, quad_coords[0], quad_coords[1], corner_coords));
3928852b71a7SToby Isaac   #else
3929648bc8c4SBarry Smith     PetscCallP4est(p4est_qcoord_to_vertex, (pforest->forest->connectivity, coarsePoint, quad_coords[0], quad_coords[1], quad_coords[2], corner_coords));
3930852b71a7SToby Isaac   #endif
3931ad540459SPierre Jolivet     for (PetscInt d = 0; d < PetscMin(cDim, 3); d++) coords[pos++] = corner_coords[d];
3932ad540459SPierre Jolivet     for (PetscInt d = PetscMin(cDim, 3); d < cDim; d++) coords[pos++] = 0.;
3933852b71a7SToby Isaac   }
39343ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3935852b71a7SToby Isaac }
3936852b71a7SToby Isaac 
DMPforestLocalizeCoordinates(DM dm,DM plex)3937d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPforestLocalizeCoordinates(DM dm, DM plex)
3938d71ae5a4SJacob Faibussowitsch {
39390a96aa3bSJed Brown   DM_Forest         *forest;
39400a96aa3bSJed Brown   DM_Forest_pforest *pforest;
39416858538eSMatthew G. Knepley   DM                 base, cdm, cdmCell;
3942852b71a7SToby Isaac   Vec                cVec, cVecOld;
3943852b71a7SToby Isaac   PetscSection       oldSection, newSection;
39440a96aa3bSJed Brown   PetscScalar       *coords2;
39456858538eSMatthew G. Knepley   const PetscReal   *L;
39460a96aa3bSJed Brown   PetscInt           cLocalStart, cLocalEnd, coarsePoint;
3947852b71a7SToby Isaac   PetscInt           cDim, newStart, newEnd;
3948852b71a7SToby Isaac   PetscInt           v, vStart, vEnd, cp, cStart, cEnd, cEndInterior;
39490a96aa3bSJed Brown   p4est_topidx_t     flt, llt, t;
39500a96aa3bSJed Brown   p4est_tree_t      *trees;
39516858538eSMatthew G. Knepley   PetscBool          baseLocalized = PETSC_FALSE;
39520a96aa3bSJed Brown 
39530a96aa3bSJed Brown   PetscFunctionBegin;
39544fb89dddSMatthew G. Knepley   PetscCall(DMGetPeriodicity(dm, NULL, NULL, &L));
39550a96aa3bSJed Brown   /* we localize on all cells if we don't have a base DM or the base DM coordinates have not been localized */
39569566063dSJacob Faibussowitsch   PetscCall(DMGetCoordinateDim(dm, &cDim));
39579566063dSJacob Faibussowitsch   PetscCall(DMForestGetBaseDM(dm, &base));
39586858538eSMatthew G. Knepley   if (base) PetscCall(DMGetCoordinatesLocalized(base, &baseLocalized));
39590a96aa3bSJed Brown   if (!baseLocalized) base = NULL;
39603ba16761SJacob Faibussowitsch   if (!baseLocalized && !L) PetscFunctionReturn(PETSC_SUCCESS);
39619566063dSJacob Faibussowitsch   PetscCall(DMPlexGetChart(plex, &newStart, &newEnd));
39620a96aa3bSJed Brown 
39639566063dSJacob Faibussowitsch   PetscCall(PetscSectionCreate(PetscObjectComm((PetscObject)dm), &newSection));
39649566063dSJacob Faibussowitsch   PetscCall(PetscSectionSetNumFields(newSection, 1));
39659566063dSJacob Faibussowitsch   PetscCall(PetscSectionSetFieldComponents(newSection, 0, cDim));
39669566063dSJacob Faibussowitsch   PetscCall(PetscSectionSetChart(newSection, newStart, newEnd));
39670a96aa3bSJed Brown 
39689566063dSJacob Faibussowitsch   PetscCall(DMGetCoordinateSection(plex, &oldSection));
39699566063dSJacob Faibussowitsch   PetscCall(DMPlexGetDepthStratum(plex, 0, &vStart, &vEnd));
3970852b71a7SToby Isaac   PetscCall(DMGetCoordinatesLocal(plex, &cVecOld));
39710a96aa3bSJed Brown 
39720a96aa3bSJed Brown   forest      = (DM_Forest *)dm->data;
39730a96aa3bSJed Brown   pforest     = (DM_Forest_pforest *)forest->data;
39740a96aa3bSJed Brown   cLocalStart = pforest->cLocalStart;
39750a96aa3bSJed Brown   cLocalEnd   = pforest->cLocalEnd;
39760a96aa3bSJed Brown   flt         = pforest->forest->first_local_tree;
39770a96aa3bSJed Brown   llt         = pforest->forest->last_local_tree;
39780a96aa3bSJed Brown   trees       = (p4est_tree_t *)pforest->forest->trees->array;
39790a96aa3bSJed Brown 
39809566063dSJacob Faibussowitsch   PetscCall(DMPlexGetHeightStratum(plex, 0, &cStart, &cEnd));
39812827ebadSStefano Zampini   PetscCall(DMPlexGetCellTypeStratum(plex, DM_POLYTOPE_FV_GHOST, &cEndInterior, NULL));
39820a96aa3bSJed Brown   cEnd = cEndInterior < 0 ? cEnd : cEndInterior;
3983852b71a7SToby Isaac   cp   = 0;
39840a96aa3bSJed Brown   if (cLocalStart > 0) {
39850a96aa3bSJed Brown     p4est_quadrant_t *ghosts = (p4est_quadrant_t *)pforest->ghost->ghosts.array;
3986852b71a7SToby Isaac     PetscInt          cell;
39870a96aa3bSJed Brown 
3988852b71a7SToby Isaac     for (cell = 0; cell < cLocalStart; ++cell, cp++) {
3989852b71a7SToby Isaac       p4est_quadrant_t *quad = &ghosts[cell];
3990852b71a7SToby Isaac 
39910a96aa3bSJed Brown       coarsePoint = quad->p.which_tree;
3992852b71a7SToby Isaac       PetscCall(PforestCheckLocalizeCell(plex, cDim, cVecOld, pforest, oldSection, newSection, cell, coarsePoint, quad));
39930a96aa3bSJed Brown     }
39940a96aa3bSJed Brown   }
39950a96aa3bSJed Brown   for (t = flt; t <= llt; t++) {
3996f4f49eeaSPierre Jolivet     p4est_tree_t     *tree     = &trees[t];
39970a96aa3bSJed Brown     PetscInt          offset   = cLocalStart + tree->quadrants_offset;
39980a96aa3bSJed Brown     PetscInt          numQuads = (PetscInt)tree->quadrants.elem_count;
3999852b71a7SToby Isaac     p4est_quadrant_t *quads    = (p4est_quadrant_t *)tree->quadrants.array;
40000a96aa3bSJed Brown     PetscInt          i;
40010a96aa3bSJed Brown 
40020a96aa3bSJed Brown     if (!numQuads) continue;
40030a96aa3bSJed Brown     coarsePoint = t;
4004852b71a7SToby Isaac     for (i = 0; i < numQuads; i++, cp++) {
4005852b71a7SToby Isaac       PetscInt          cell = i + offset;
4006852b71a7SToby Isaac       p4est_quadrant_t *quad = &quads[i];
40070a96aa3bSJed Brown 
4008852b71a7SToby Isaac       PetscCall(PforestCheckLocalizeCell(plex, cDim, cVecOld, pforest, oldSection, newSection, cell, coarsePoint, quad));
40090a96aa3bSJed Brown     }
40100a96aa3bSJed Brown   }
40110a96aa3bSJed Brown   if (cLocalEnd - cLocalStart < cEnd - cStart) {
40120a96aa3bSJed Brown     p4est_quadrant_t *ghosts    = (p4est_quadrant_t *)pforest->ghost->ghosts.array;
40130a96aa3bSJed Brown     PetscInt          numGhosts = (PetscInt)pforest->ghost->ghosts.elem_count;
40140a96aa3bSJed Brown     PetscInt          count;
40150a96aa3bSJed Brown 
4016852b71a7SToby Isaac     for (count = 0; count < numGhosts - cLocalStart; count++, cp++) {
40170a96aa3bSJed Brown       p4est_quadrant_t *quad = &ghosts[count + cLocalStart];
40180a96aa3bSJed Brown       coarsePoint            = quad->p.which_tree;
4019852b71a7SToby Isaac       PetscInt cell          = count + cLocalEnd;
40200a96aa3bSJed Brown 
4021852b71a7SToby Isaac       PetscCall(PforestCheckLocalizeCell(plex, cDim, cVecOld, pforest, oldSection, newSection, cell, coarsePoint, quad));
40220a96aa3bSJed Brown     }
40230a96aa3bSJed Brown   }
4024852b71a7SToby Isaac   PetscAssert(cp == cEnd - cStart, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Unexpected number of fine cells %" PetscInt_FMT " != %" PetscInt_FMT, cp, cEnd - cStart);
40250a96aa3bSJed Brown 
40269566063dSJacob Faibussowitsch   PetscCall(PetscSectionSetUp(newSection));
40276858538eSMatthew G. Knepley   PetscCall(DMGetCoordinateDM(plex, &cdm));
40286858538eSMatthew G. Knepley   PetscCall(DMClone(cdm, &cdmCell));
40296858538eSMatthew G. Knepley   PetscCall(DMSetCellCoordinateDM(plex, cdmCell));
40306858538eSMatthew G. Knepley   PetscCall(DMDestroy(&cdmCell));
40316858538eSMatthew G. Knepley   PetscCall(DMSetCellCoordinateSection(plex, cDim, newSection));
40329566063dSJacob Faibussowitsch   PetscCall(PetscSectionGetStorageSize(newSection, &v));
40339566063dSJacob Faibussowitsch   PetscCall(VecCreate(PETSC_COMM_SELF, &cVec));
40349566063dSJacob Faibussowitsch   PetscCall(PetscObjectSetName((PetscObject)cVec, "coordinates"));
40359566063dSJacob Faibussowitsch   PetscCall(VecSetBlockSize(cVec, cDim));
40369566063dSJacob Faibussowitsch   PetscCall(VecSetSizes(cVec, v, PETSC_DETERMINE));
40379566063dSJacob Faibussowitsch   PetscCall(VecSetType(cVec, VECSTANDARD));
40389566063dSJacob Faibussowitsch   PetscCall(VecSet(cVec, PETSC_MIN_REAL));
40390a96aa3bSJed Brown 
40400a96aa3bSJed Brown   /* Localize coordinates on cells if needed */
40416858538eSMatthew G. Knepley   PetscCall(VecGetArray(cVec, &coords2));
4042852b71a7SToby Isaac   cp = 0;
4043852b71a7SToby Isaac   if (cLocalStart > 0) {
4044852b71a7SToby Isaac     p4est_quadrant_t *ghosts = (p4est_quadrant_t *)pforest->ghost->ghosts.array;
4045852b71a7SToby Isaac     PetscInt          cell;
4046852b71a7SToby Isaac 
4047852b71a7SToby Isaac     for (cell = 0; cell < cLocalStart; ++cell, cp++) {
4048852b71a7SToby Isaac       p4est_quadrant_t *quad = &ghosts[cell];
4049852b71a7SToby Isaac 
4050852b71a7SToby Isaac       coarsePoint = quad->p.which_tree;
4051852b71a7SToby Isaac       PetscCall(PforestLocalizeCell(plex, cDim, pforest, newSection, cell, coarsePoint, quad, coords2));
4052852b71a7SToby Isaac     }
4053852b71a7SToby Isaac   }
40540a96aa3bSJed Brown   for (t = flt; t <= llt; t++) {
4055f4f49eeaSPierre Jolivet     p4est_tree_t     *tree     = &trees[t];
40560a96aa3bSJed Brown     PetscInt          offset   = cLocalStart + tree->quadrants_offset;
40570a96aa3bSJed Brown     PetscInt          numQuads = (PetscInt)tree->quadrants.elem_count;
4058852b71a7SToby Isaac     p4est_quadrant_t *quads    = (p4est_quadrant_t *)tree->quadrants.array;
4059852b71a7SToby Isaac     PetscInt          i;
40600a96aa3bSJed Brown 
40610a96aa3bSJed Brown     if (!numQuads) continue;
4062852b71a7SToby Isaac     coarsePoint = t;
4063852b71a7SToby Isaac     for (i = 0; i < numQuads; i++, cp++) {
4064852b71a7SToby Isaac       PetscInt          cell = i + offset;
40650a96aa3bSJed Brown       p4est_quadrant_t *quad = &quads[i];
40660a96aa3bSJed Brown 
4067852b71a7SToby Isaac       PetscCall(PforestLocalizeCell(plex, cDim, pforest, newSection, cell, coarsePoint, quad, coords2));
4068852b71a7SToby Isaac     }
4069852b71a7SToby Isaac   }
4070852b71a7SToby Isaac   if (cLocalEnd - cLocalStart < cEnd - cStart) {
4071852b71a7SToby Isaac     p4est_quadrant_t *ghosts    = (p4est_quadrant_t *)pforest->ghost->ghosts.array;
4072852b71a7SToby Isaac     PetscInt          numGhosts = (PetscInt)pforest->ghost->ghosts.elem_count;
4073852b71a7SToby Isaac     PetscInt          count;
40740a96aa3bSJed Brown 
4075852b71a7SToby Isaac     for (count = 0; count < numGhosts - cLocalStart; count++, cp++) {
4076852b71a7SToby Isaac       p4est_quadrant_t *quad = &ghosts[count + cLocalStart];
4077852b71a7SToby Isaac       coarsePoint            = quad->p.which_tree;
4078852b71a7SToby Isaac       PetscInt cell          = count + cLocalEnd;
40790a96aa3bSJed Brown 
4080852b71a7SToby Isaac       PetscCall(PforestLocalizeCell(plex, cDim, pforest, newSection, cell, coarsePoint, quad, coords2));
40810a96aa3bSJed Brown     }
40820a96aa3bSJed Brown   }
40839566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(cVec, &coords2));
40846858538eSMatthew G. Knepley   PetscCall(DMSetCellCoordinatesLocal(plex, cVec));
40859566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&cVec));
40869566063dSJacob Faibussowitsch   PetscCall(PetscSectionDestroy(&newSection));
40873ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
40880a96aa3bSJed Brown }
40890a96aa3bSJed Brown 
40900a96aa3bSJed Brown   #define DMForestClearAdaptivityForest_pforest _append_pforest(DMForestClearAdaptivityForest)
DMForestClearAdaptivityForest_pforest(DM dm)4091d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMForestClearAdaptivityForest_pforest(DM dm)
4092d71ae5a4SJacob Faibussowitsch {
40930a96aa3bSJed Brown   DM_Forest         *forest;
40940a96aa3bSJed Brown   DM_Forest_pforest *pforest;
40950a96aa3bSJed Brown 
40960a96aa3bSJed Brown   PetscFunctionBegin;
40970a96aa3bSJed Brown   forest  = (DM_Forest *)dm->data;
40980a96aa3bSJed Brown   pforest = (DM_Forest_pforest *)forest->data;
4099f4f49eeaSPierre Jolivet   PetscCall(PetscSFDestroy(&pforest->pointAdaptToSelfSF));
4100f4f49eeaSPierre Jolivet   PetscCall(PetscSFDestroy(&pforest->pointSelfToAdaptSF));
41019566063dSJacob Faibussowitsch   PetscCall(PetscFree(pforest->pointAdaptToSelfCids));
41029566063dSJacob Faibussowitsch   PetscCall(PetscFree(pforest->pointSelfToAdaptCids));
41033ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
41040a96aa3bSJed Brown }
41050a96aa3bSJed Brown 
DMConvert_pforest_plex(DM dm,DMType newtype,DM * plex)4106d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMConvert_pforest_plex(DM dm, DMType newtype, DM *plex)
4107d71ae5a4SJacob Faibussowitsch {
41080a96aa3bSJed Brown   DM_Forest           *forest;
41090a96aa3bSJed Brown   DM_Forest_pforest   *pforest;
41100a96aa3bSJed Brown   DM                   refTree, newPlex, base;
41110a96aa3bSJed Brown   PetscInt             adjDim, adjCodim, coordDim;
41120a96aa3bSJed Brown   MPI_Comm             comm;
41130a96aa3bSJed Brown   PetscBool            isPforest;
41140a96aa3bSJed Brown   PetscInt             dim;
41150a96aa3bSJed Brown   PetscInt             overlap;
41160a96aa3bSJed Brown   p4est_connect_type_t ctype;
41170a96aa3bSJed Brown   p4est_locidx_t       first_local_quad = -1;
41180a96aa3bSJed Brown   sc_array_t          *points_per_dim, *cone_sizes, *cones, *cone_orientations, *coords, *children, *parents, *childids, *leaves, *remotes;
41190a96aa3bSJed Brown   PetscSection         parentSection;
41200a96aa3bSJed Brown   PetscSF              pointSF;
41210a96aa3bSJed Brown   size_t               zz, count;
41220a96aa3bSJed Brown   PetscInt             pStart, pEnd;
41230a96aa3bSJed Brown   DMLabel              ghostLabelBase = NULL;
41240a96aa3bSJed Brown 
41250a96aa3bSJed Brown   PetscFunctionBegin;
41260a96aa3bSJed Brown   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
41270a96aa3bSJed Brown   comm = PetscObjectComm((PetscObject)dm);
41289566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)dm, DMPFOREST, &isPforest));
412928b400f6SJacob Faibussowitsch   PetscCheck(isPforest, comm, PETSC_ERR_ARG_WRONG, "Expected DM type %s, got %s", DMPFOREST, ((PetscObject)dm)->type_name);
4130671c294aSToby Isaac   PetscCall(DMSetUp(dm));
41319566063dSJacob Faibussowitsch   PetscCall(DMGetDimension(dm, &dim));
413263a3b9bcSJacob Faibussowitsch   PetscCheck(dim == P4EST_DIM, comm, PETSC_ERR_ARG_WRONG, "Expected DM dimension %d, got %" PetscInt_FMT, P4EST_DIM, dim);
41330a96aa3bSJed Brown   forest  = (DM_Forest *)dm->data;
41340a96aa3bSJed Brown   pforest = (DM_Forest_pforest *)forest->data;
41359566063dSJacob Faibussowitsch   PetscCall(DMForestGetBaseDM(dm, &base));
413648a46eb9SPierre Jolivet   if (base) PetscCall(DMGetLabel(base, "ghost", &ghostLabelBase));
41370a96aa3bSJed Brown   if (!pforest->plex) {
41380a96aa3bSJed Brown     PetscMPIInt size;
4139c7d28b7cSMatthew G. Knepley     const char *name;
41400a96aa3bSJed Brown 
41419566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Comm_size(comm, &size));
41429566063dSJacob Faibussowitsch     PetscCall(DMCreate(comm, &newPlex));
4143c7d28b7cSMatthew G. Knepley     PetscCall(PetscObjectGetName((PetscObject)dm, &name));
4144c7d28b7cSMatthew G. Knepley     PetscCall(PetscObjectSetName((PetscObject)newPlex, name));
41459566063dSJacob Faibussowitsch     PetscCall(DMSetType(newPlex, DMPLEX));
41469566063dSJacob Faibussowitsch     PetscCall(DMSetMatType(newPlex, dm->mattype));
41470a96aa3bSJed Brown     /* share labels */
41489566063dSJacob Faibussowitsch     PetscCall(DMCopyLabels(dm, newPlex, PETSC_OWN_POINTER, PETSC_TRUE, DM_COPY_LABELS_FAIL));
41499566063dSJacob Faibussowitsch     PetscCall(DMForestGetAdjacencyDimension(dm, &adjDim));
41509566063dSJacob Faibussowitsch     PetscCall(DMForestGetAdjacencyCodimension(dm, &adjCodim));
41519566063dSJacob Faibussowitsch     PetscCall(DMGetCoordinateDim(dm, &coordDim));
41520a96aa3bSJed Brown     if (adjDim == 0) {
41530a96aa3bSJed Brown       ctype = P4EST_CONNECT_FULL;
41540a96aa3bSJed Brown     } else if (adjCodim == 1) {
41550a96aa3bSJed Brown       ctype = P4EST_CONNECT_FACE;
41560a96aa3bSJed Brown   #if defined(P4_TO_P8)
41570a96aa3bSJed Brown     } else if (adjDim == 1) {
41580a96aa3bSJed Brown       ctype = P8EST_CONNECT_EDGE;
41590a96aa3bSJed Brown   #endif
41600a96aa3bSJed Brown     } else {
416163a3b9bcSJacob Faibussowitsch       SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Invalid adjacency dimension %" PetscInt_FMT, adjDim);
41620a96aa3bSJed Brown     }
416363a3b9bcSJacob Faibussowitsch     PetscCheck(ctype == P4EST_CONNECT_FULL, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Adjacency dimension %" PetscInt_FMT " / codimension %" PetscInt_FMT " not supported yet", adjDim, adjCodim);
41649566063dSJacob Faibussowitsch     PetscCall(DMForestGetPartitionOverlap(dm, &overlap));
416560667520SVaclav Hapla     PetscCall(DMPlexSetOverlap_Plex(newPlex, NULL, overlap));
41660a96aa3bSJed Brown 
41670a96aa3bSJed Brown     points_per_dim    = sc_array_new(sizeof(p4est_locidx_t));
41680a96aa3bSJed Brown     cone_sizes        = sc_array_new(sizeof(p4est_locidx_t));
41690a96aa3bSJed Brown     cones             = sc_array_new(sizeof(p4est_locidx_t));
41700a96aa3bSJed Brown     cone_orientations = sc_array_new(sizeof(p4est_locidx_t));
41710a96aa3bSJed Brown     coords            = sc_array_new(3 * sizeof(double));
41720a96aa3bSJed Brown     children          = sc_array_new(sizeof(p4est_locidx_t));
41730a96aa3bSJed Brown     parents           = sc_array_new(sizeof(p4est_locidx_t));
41740a96aa3bSJed Brown     childids          = sc_array_new(sizeof(p4est_locidx_t));
41750a96aa3bSJed Brown     leaves            = sc_array_new(sizeof(p4est_locidx_t));
41760a96aa3bSJed Brown     remotes           = sc_array_new(2 * sizeof(p4est_locidx_t));
41770a96aa3bSJed Brown 
4178792fecdfSBarry Smith     PetscCallP4est(p4est_get_plex_data_ext, (pforest->forest, &pforest->ghost, &pforest->lnodes, ctype, (int)((size > 1) ? overlap : 0), &first_local_quad, points_per_dim, cone_sizes, cones, cone_orientations, coords, children, parents, childids, leaves, remotes, 1));
41790a96aa3bSJed Brown 
41800a96aa3bSJed Brown     pforest->cLocalStart = (PetscInt)first_local_quad;
41810a96aa3bSJed Brown     pforest->cLocalEnd   = pforest->cLocalStart + (PetscInt)pforest->forest->local_num_quadrants;
41829566063dSJacob Faibussowitsch     PetscCall(locidx_to_PetscInt(points_per_dim));
41839566063dSJacob Faibussowitsch     PetscCall(locidx_to_PetscInt(cone_sizes));
41849566063dSJacob Faibussowitsch     PetscCall(locidx_to_PetscInt(cones));
41859566063dSJacob Faibussowitsch     PetscCall(locidx_to_PetscInt(cone_orientations));
41869566063dSJacob Faibussowitsch     PetscCall(coords_double_to_PetscScalar(coords, coordDim));
41879566063dSJacob Faibussowitsch     PetscCall(locidx_to_PetscInt(children));
41889566063dSJacob Faibussowitsch     PetscCall(locidx_to_PetscInt(parents));
41899566063dSJacob Faibussowitsch     PetscCall(locidx_to_PetscInt(childids));
41909566063dSJacob Faibussowitsch     PetscCall(locidx_to_PetscInt(leaves));
41919566063dSJacob Faibussowitsch     PetscCall(locidx_pair_to_PetscSFNode(remotes));
41920a96aa3bSJed Brown 
41939566063dSJacob Faibussowitsch     PetscCall(DMSetDimension(newPlex, P4EST_DIM));
41949566063dSJacob Faibussowitsch     PetscCall(DMSetCoordinateDim(newPlex, coordDim));
41959566063dSJacob Faibussowitsch     PetscCall(DMPlexSetMaxProjectionHeight(newPlex, P4EST_DIM - 1));
41969566063dSJacob Faibussowitsch     PetscCall(DMPlexCreateFromDAG(newPlex, P4EST_DIM, (PetscInt *)points_per_dim->array, (PetscInt *)cone_sizes->array, (PetscInt *)cones->array, (PetscInt *)cone_orientations->array, (PetscScalar *)coords->array));
41979566063dSJacob Faibussowitsch     PetscCall(DMPlexConvertOldOrientations_Internal(newPlex));
41989566063dSJacob Faibussowitsch     PetscCall(DMCreateReferenceTree_pforest(comm, &refTree));
41999566063dSJacob Faibussowitsch     PetscCall(DMPlexSetReferenceTree(newPlex, refTree));
42009566063dSJacob Faibussowitsch     PetscCall(PetscSectionCreate(comm, &parentSection));
42019566063dSJacob Faibussowitsch     PetscCall(DMPlexGetChart(newPlex, &pStart, &pEnd));
42029566063dSJacob Faibussowitsch     PetscCall(PetscSectionSetChart(parentSection, pStart, pEnd));
42030a96aa3bSJed Brown     count = children->elem_count;
42040a96aa3bSJed Brown     for (zz = 0; zz < count; zz++) {
42050a96aa3bSJed Brown       PetscInt child = *((PetscInt *)sc_array_index(children, zz));
42060a96aa3bSJed Brown 
42079566063dSJacob Faibussowitsch       PetscCall(PetscSectionSetDof(parentSection, child, 1));
42080a96aa3bSJed Brown     }
42099566063dSJacob Faibussowitsch     PetscCall(PetscSectionSetUp(parentSection));
42109566063dSJacob Faibussowitsch     PetscCall(DMPlexSetTree(newPlex, parentSection, (PetscInt *)parents->array, (PetscInt *)childids->array));
42119566063dSJacob Faibussowitsch     PetscCall(PetscSectionDestroy(&parentSection));
42129566063dSJacob Faibussowitsch     PetscCall(PetscSFCreate(comm, &pointSF));
42130a96aa3bSJed Brown     /*
42140a96aa3bSJed Brown        These arrays defining the sf are from the p4est library, but the code there shows the leaves being populated in increasing order.
42150a96aa3bSJed Brown        https://gitlab.com/petsc/petsc/merge_requests/2248#note_240186391
42160a96aa3bSJed Brown     */
42179566063dSJacob Faibussowitsch     PetscCall(PetscSFSetGraph(pointSF, pEnd - pStart, (PetscInt)leaves->elem_count, (PetscInt *)leaves->array, PETSC_COPY_VALUES, (PetscSFNode *)remotes->array, PETSC_COPY_VALUES));
42189566063dSJacob Faibussowitsch     PetscCall(DMSetPointSF(newPlex, pointSF));
42199566063dSJacob Faibussowitsch     PetscCall(DMSetPointSF(dm, pointSF));
42200a96aa3bSJed Brown     {
42210a96aa3bSJed Brown       DM coordDM;
42220a96aa3bSJed Brown 
42239566063dSJacob Faibussowitsch       PetscCall(DMGetCoordinateDM(newPlex, &coordDM));
42249566063dSJacob Faibussowitsch       PetscCall(DMSetPointSF(coordDM, pointSF));
42250a96aa3bSJed Brown     }
42269566063dSJacob Faibussowitsch     PetscCall(PetscSFDestroy(&pointSF));
42270a96aa3bSJed Brown     sc_array_destroy(points_per_dim);
42280a96aa3bSJed Brown     sc_array_destroy(cone_sizes);
42290a96aa3bSJed Brown     sc_array_destroy(cones);
42300a96aa3bSJed Brown     sc_array_destroy(cone_orientations);
42310a96aa3bSJed Brown     sc_array_destroy(coords);
42320a96aa3bSJed Brown     sc_array_destroy(children);
42330a96aa3bSJed Brown     sc_array_destroy(parents);
42340a96aa3bSJed Brown     sc_array_destroy(childids);
42350a96aa3bSJed Brown     sc_array_destroy(leaves);
42360a96aa3bSJed Brown     sc_array_destroy(remotes);
42370a96aa3bSJed Brown 
42380a96aa3bSJed Brown     {
42394fb89dddSMatthew G. Knepley       const PetscReal *maxCell, *Lstart, *L;
42400a96aa3bSJed Brown 
42414fb89dddSMatthew G. Knepley       PetscCall(DMGetPeriodicity(dm, &maxCell, &Lstart, &L));
42424fb89dddSMatthew G. Knepley       PetscCall(DMSetPeriodicity(newPlex, maxCell, Lstart, L));
42439566063dSJacob Faibussowitsch       PetscCall(DMPforestLocalizeCoordinates(dm, newPlex));
42440a96aa3bSJed Brown     }
42450a96aa3bSJed Brown 
42460a96aa3bSJed Brown     if (overlap > 0) { /* the p4est routine can't set all of the coordinates in its routine if there is overlap */
42470a96aa3bSJed Brown       Vec                coordsGlobal, coordsLocal;
42480a96aa3bSJed Brown       const PetscScalar *globalArray;
42490a96aa3bSJed Brown       PetscScalar       *localArray;
42500a96aa3bSJed Brown       PetscSF            coordSF;
42510a96aa3bSJed Brown       DM                 coordDM;
42520a96aa3bSJed Brown 
42539566063dSJacob Faibussowitsch       PetscCall(DMGetCoordinateDM(newPlex, &coordDM));
42549566063dSJacob Faibussowitsch       PetscCall(DMGetSectionSF(coordDM, &coordSF));
42559566063dSJacob Faibussowitsch       PetscCall(DMGetCoordinates(newPlex, &coordsGlobal));
42569566063dSJacob Faibussowitsch       PetscCall(DMGetCoordinatesLocal(newPlex, &coordsLocal));
42579566063dSJacob Faibussowitsch       PetscCall(VecGetArrayRead(coordsGlobal, &globalArray));
42589566063dSJacob Faibussowitsch       PetscCall(VecGetArray(coordsLocal, &localArray));
42599566063dSJacob Faibussowitsch       PetscCall(PetscSFBcastBegin(coordSF, MPIU_SCALAR, globalArray, localArray, MPI_REPLACE));
42609566063dSJacob Faibussowitsch       PetscCall(PetscSFBcastEnd(coordSF, MPIU_SCALAR, globalArray, localArray, MPI_REPLACE));
42619566063dSJacob Faibussowitsch       PetscCall(VecRestoreArray(coordsLocal, &localArray));
42629566063dSJacob Faibussowitsch       PetscCall(VecRestoreArrayRead(coordsGlobal, &globalArray));
42639566063dSJacob Faibussowitsch       PetscCall(DMSetCoordinatesLocal(newPlex, coordsLocal));
42640a96aa3bSJed Brown     }
42659566063dSJacob Faibussowitsch     PetscCall(DMPforestMapCoordinates(dm, newPlex));
42660a96aa3bSJed Brown 
42670a96aa3bSJed Brown     pforest->plex = newPlex;
42680a96aa3bSJed Brown 
42690a96aa3bSJed Brown     /* copy labels */
42709566063dSJacob Faibussowitsch     PetscCall(DMPforestLabelsFinalize(dm, newPlex));
42710a96aa3bSJed Brown 
42720a96aa3bSJed Brown     if (ghostLabelBase || pforest->ghostName) { /* we have to do this after copying labels because the labels drive the construction of ghost cells */
42730a96aa3bSJed Brown       PetscInt numAdded;
42740a96aa3bSJed Brown       DM       newPlexGhosted;
42750a96aa3bSJed Brown       void    *ctx;
42760a96aa3bSJed Brown 
42779566063dSJacob Faibussowitsch       PetscCall(DMPlexConstructGhostCells(newPlex, pforest->ghostName, &numAdded, &newPlexGhosted));
42789566063dSJacob Faibussowitsch       PetscCall(DMGetApplicationContext(newPlex, &ctx));
42799566063dSJacob Faibussowitsch       PetscCall(DMSetApplicationContext(newPlexGhosted, ctx));
42800a96aa3bSJed Brown       /* we want the sf for the ghost dm to be the one for the p4est dm as well */
42819566063dSJacob Faibussowitsch       PetscCall(DMGetPointSF(newPlexGhosted, &pointSF));
42829566063dSJacob Faibussowitsch       PetscCall(DMSetPointSF(dm, pointSF));
42839566063dSJacob Faibussowitsch       PetscCall(DMDestroy(&newPlex));
42849566063dSJacob Faibussowitsch       PetscCall(DMPlexSetReferenceTree(newPlexGhosted, refTree));
42859566063dSJacob Faibussowitsch       PetscCall(DMForestClearAdaptivityForest_pforest(dm));
42860a96aa3bSJed Brown       newPlex = newPlexGhosted;
42870a96aa3bSJed Brown 
42880a96aa3bSJed Brown       /* share the labels back */
42899566063dSJacob Faibussowitsch       PetscCall(DMDestroyLabelLinkList_Internal(dm));
42909566063dSJacob Faibussowitsch       PetscCall(DMCopyLabels(newPlex, dm, PETSC_OWN_POINTER, PETSC_TRUE, DM_COPY_LABELS_FAIL));
42910a96aa3bSJed Brown       pforest->plex = newPlex;
42920a96aa3bSJed Brown     }
42939566063dSJacob Faibussowitsch     PetscCall(DMDestroy(&refTree));
42940a96aa3bSJed Brown     if (dm->setfromoptionscalled) {
4295d0609cedSBarry Smith       PetscObjectOptionsBegin((PetscObject)newPlex);
4296dbbe0bcdSBarry Smith       PetscCall(DMSetFromOptions_NonRefinement_Plex(newPlex, PetscOptionsObject));
4297dbbe0bcdSBarry Smith       PetscCall(PetscObjectProcessOptionsHandlers((PetscObject)newPlex, PetscOptionsObject));
4298d0609cedSBarry Smith       PetscOptionsEnd();
42990a96aa3bSJed Brown     }
43009566063dSJacob Faibussowitsch     PetscCall(DMViewFromOptions(newPlex, NULL, "-dm_p4est_plex_view"));
43010a96aa3bSJed Brown     {
43026858538eSMatthew G. Knepley       DM           cdm;
43030a96aa3bSJed Brown       PetscSection coordsSec;
43040a96aa3bSJed Brown       Vec          coords;
43050a96aa3bSJed Brown       PetscInt     cDim;
43060a96aa3bSJed Brown 
43079566063dSJacob Faibussowitsch       PetscCall(DMGetCoordinateDim(newPlex, &cDim));
43089566063dSJacob Faibussowitsch       PetscCall(DMGetCoordinateSection(newPlex, &coordsSec));
43099566063dSJacob Faibussowitsch       PetscCall(DMSetCoordinateSection(dm, cDim, coordsSec));
43109566063dSJacob Faibussowitsch       PetscCall(DMGetCoordinatesLocal(newPlex, &coords));
43119566063dSJacob Faibussowitsch       PetscCall(DMSetCoordinatesLocal(dm, coords));
4312707c51c7SToby Isaac       PetscCall(DMGetCoordinateDM(newPlex, &cdm));
4313707c51c7SToby Isaac       if (cdm) {
4314707c51c7SToby Isaac         PetscFE fe;
4315707c51c7SToby Isaac   #if !defined(P4_TO_P8)
4316707c51c7SToby Isaac         DMPolytopeType celltype = DM_POLYTOPE_QUADRILATERAL;
4317707c51c7SToby Isaac   #else
4318707c51c7SToby Isaac         DMPolytopeType celltype = DM_POLYTOPE_HEXAHEDRON;
4319707c51c7SToby Isaac   #endif
4320707c51c7SToby Isaac 
4321707c51c7SToby Isaac         PetscCall(PetscFECreateLagrangeByCell(PETSC_COMM_SELF, dim, dim, celltype, 1, PETSC_DEFAULT, &fe));
4322707c51c7SToby Isaac         PetscCall(DMSetField(cdm, 0, NULL, (PetscObject)fe));
4323707c51c7SToby Isaac         PetscCall(PetscFEDestroy(&fe));
4324707c51c7SToby Isaac         PetscCall(DMCreateDS(cdm));
4325707c51c7SToby Isaac       }
43266858538eSMatthew G. Knepley       PetscCall(DMGetCellCoordinateDM(newPlex, &cdm));
43276858538eSMatthew G. Knepley       if (cdm) PetscCall(DMSetCellCoordinateDM(dm, cdm));
43286858538eSMatthew G. Knepley       PetscCall(DMGetCellCoordinateSection(newPlex, &coordsSec));
43296858538eSMatthew G. Knepley       if (coordsSec) PetscCall(DMSetCellCoordinateSection(dm, cDim, coordsSec));
43306858538eSMatthew G. Knepley       PetscCall(DMGetCellCoordinatesLocal(newPlex, &coords));
43316858538eSMatthew G. Knepley       if (coords) PetscCall(DMSetCellCoordinatesLocal(dm, coords));
43320a96aa3bSJed Brown     }
4333cdf84abbSMatthew G. Knepley   } else {
4334cdf84abbSMatthew G. Knepley     PetscCall(DMCopyLabels(dm, pforest->plex, PETSC_OWN_POINTER, PETSC_FALSE, DM_COPY_LABELS_REPLACE));
43350a96aa3bSJed Brown   }
43360a96aa3bSJed Brown   newPlex = pforest->plex;
43370a96aa3bSJed Brown   if (plex) {
43389566063dSJacob Faibussowitsch     PetscCall(DMClone(newPlex, plex));
43396858538eSMatthew G. Knepley   #if 0
43409566063dSJacob Faibussowitsch     PetscCall(DMGetCoordinateDM(newPlex,&coordDM));
43419566063dSJacob Faibussowitsch     PetscCall(DMSetCoordinateDM(*plex,coordDM));
43426858538eSMatthew G. Knepley     PetscCall(DMGetCellCoordinateDM(newPlex,&coordDM));
43436858538eSMatthew G. Knepley     PetscCall(DMSetCellCoordinateDM(*plex,coordDM));
43446858538eSMatthew G. Knepley   #endif
43459566063dSJacob Faibussowitsch     PetscCall(DMShareDiscretization(dm, *plex));
43460a96aa3bSJed Brown   }
43473ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
43480a96aa3bSJed Brown }
43490a96aa3bSJed Brown 
DMSetFromOptions_pforest(DM dm,PetscOptionItems PetscOptionsObject)4350ce78bad3SBarry Smith static PetscErrorCode DMSetFromOptions_pforest(DM dm, PetscOptionItems PetscOptionsObject)
4351d71ae5a4SJacob Faibussowitsch {
43520a96aa3bSJed Brown   DM_Forest_pforest *pforest = (DM_Forest_pforest *)((DM_Forest *)dm->data)->data;
43530a96aa3bSJed Brown   char               stringBuffer[256];
43540a96aa3bSJed Brown   PetscBool          flg;
43550a96aa3bSJed Brown 
43560a96aa3bSJed Brown   PetscFunctionBegin;
4357dbbe0bcdSBarry Smith   PetscCall(DMSetFromOptions_Forest(dm, PetscOptionsObject));
4358d0609cedSBarry Smith   PetscOptionsHeadBegin(PetscOptionsObject, "DM" P4EST_STRING " options");
4359217f96c1SStefano Zampini   PetscCall(PetscOptionsBool("-dm_p4est_partition_for_coarsening", "partition forest to allow for coarsening", "DMP4estSetPartitionForCoarsening", pforest->partition_for_coarsening, &pforest->partition_for_coarsening, NULL));
43609566063dSJacob Faibussowitsch   PetscCall(PetscOptionsString("-dm_p4est_ghost_label_name", "the name of the ghost label when converting from a DMPlex", NULL, NULL, stringBuffer, sizeof(stringBuffer), &flg));
4361d0609cedSBarry Smith   PetscOptionsHeadEnd();
43620a96aa3bSJed Brown   if (flg) {
43639566063dSJacob Faibussowitsch     PetscCall(PetscFree(pforest->ghostName));
43649566063dSJacob Faibussowitsch     PetscCall(PetscStrallocpy(stringBuffer, &pforest->ghostName));
43650a96aa3bSJed Brown   }
43663ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
43670a96aa3bSJed Brown }
43680a96aa3bSJed Brown 
43690a96aa3bSJed Brown   #if !defined(P4_TO_P8)
43700a96aa3bSJed Brown     #define DMPforestGetPartitionForCoarsening DMP4estGetPartitionForCoarsening
43710a96aa3bSJed Brown     #define DMPforestSetPartitionForCoarsening DMP4estSetPartitionForCoarsening
43720a96aa3bSJed Brown   #else
43730a96aa3bSJed Brown     #define DMPforestGetPartitionForCoarsening DMP8estGetPartitionForCoarsening
43740a96aa3bSJed Brown     #define DMPforestSetPartitionForCoarsening DMP8estSetPartitionForCoarsening
43750a96aa3bSJed Brown   #endif
43760a96aa3bSJed Brown 
DMPforestGetPartitionForCoarsening(DM dm,PetscBool * flg)4377d71ae5a4SJacob Faibussowitsch PETSC_EXTERN PetscErrorCode DMPforestGetPartitionForCoarsening(DM dm, PetscBool *flg)
4378d71ae5a4SJacob Faibussowitsch {
43790a96aa3bSJed Brown   DM_Forest_pforest *pforest;
43800a96aa3bSJed Brown 
43810a96aa3bSJed Brown   PetscFunctionBegin;
43820a96aa3bSJed Brown   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
43830a96aa3bSJed Brown   pforest = (DM_Forest_pforest *)((DM_Forest *)dm->data)->data;
43840a96aa3bSJed Brown   *flg    = pforest->partition_for_coarsening;
43853ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
43860a96aa3bSJed Brown }
43870a96aa3bSJed Brown 
DMPforestSetPartitionForCoarsening(DM dm,PetscBool flg)4388d71ae5a4SJacob Faibussowitsch PETSC_EXTERN PetscErrorCode DMPforestSetPartitionForCoarsening(DM dm, PetscBool flg)
4389d71ae5a4SJacob Faibussowitsch {
43900a96aa3bSJed Brown   DM_Forest_pforest *pforest;
43910a96aa3bSJed Brown 
43920a96aa3bSJed Brown   PetscFunctionBegin;
43930a96aa3bSJed Brown   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
43940a96aa3bSJed Brown   pforest                           = (DM_Forest_pforest *)((DM_Forest *)dm->data)->data;
43950a96aa3bSJed Brown   pforest->partition_for_coarsening = flg;
43963ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
43970a96aa3bSJed Brown }
43980a96aa3bSJed Brown 
DMPforestGetPlex(DM dm,DM * plex)4399d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPforestGetPlex(DM dm, DM *plex)
4400d71ae5a4SJacob Faibussowitsch {
44010a96aa3bSJed Brown   DM_Forest_pforest *pforest;
44020a96aa3bSJed Brown 
44030a96aa3bSJed Brown   PetscFunctionBegin;
44040a96aa3bSJed Brown   if (plex) *plex = NULL;
44059566063dSJacob Faibussowitsch   PetscCall(DMSetUp(dm));
44060a96aa3bSJed Brown   pforest = (DM_Forest_pforest *)((DM_Forest *)dm->data)->data;
440748a46eb9SPierre Jolivet   if (!pforest->plex) PetscCall(DMConvert_pforest_plex(dm, DMPLEX, NULL));
44089566063dSJacob Faibussowitsch   PetscCall(DMShareDiscretization(dm, pforest->plex));
44090a96aa3bSJed Brown   if (plex) *plex = pforest->plex;
44103ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
44110a96aa3bSJed Brown }
44120a96aa3bSJed Brown 
44130a96aa3bSJed Brown   #define DMCreateInterpolation_pforest _append_pforest(DMCreateInterpolation)
DMCreateInterpolation_pforest(DM dmCoarse,DM dmFine,Mat * interpolation,Vec * scaling)4414d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMCreateInterpolation_pforest(DM dmCoarse, DM dmFine, Mat *interpolation, Vec *scaling)
4415d71ae5a4SJacob Faibussowitsch {
44160a96aa3bSJed Brown   PetscSection gsc, gsf;
44170a96aa3bSJed Brown   PetscInt     m, n;
44180a96aa3bSJed Brown   DM           cdm;
44190a96aa3bSJed Brown 
44200a96aa3bSJed Brown   PetscFunctionBegin;
44219566063dSJacob Faibussowitsch   PetscCall(DMGetGlobalSection(dmFine, &gsf));
44229566063dSJacob Faibussowitsch   PetscCall(PetscSectionGetConstrainedStorageSize(gsf, &m));
44239566063dSJacob Faibussowitsch   PetscCall(DMGetGlobalSection(dmCoarse, &gsc));
44249566063dSJacob Faibussowitsch   PetscCall(PetscSectionGetConstrainedStorageSize(gsc, &n));
44250a96aa3bSJed Brown 
44269566063dSJacob Faibussowitsch   PetscCall(MatCreate(PetscObjectComm((PetscObject)dmFine), interpolation));
44279566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(*interpolation, m, n, PETSC_DETERMINE, PETSC_DETERMINE));
44289566063dSJacob Faibussowitsch   PetscCall(MatSetType(*interpolation, MATAIJ));
44290a96aa3bSJed Brown 
44309566063dSJacob Faibussowitsch   PetscCall(DMGetCoarseDM(dmFine, &cdm));
443108401ef6SPierre Jolivet   PetscCheck(cdm == dmCoarse, PetscObjectComm((PetscObject)dmFine), PETSC_ERR_SUP, "Only interpolation from coarse DM for now");
44320a96aa3bSJed Brown 
44330a96aa3bSJed Brown   {
44340a96aa3bSJed Brown     DM        plexF, plexC;
44350a96aa3bSJed Brown     PetscSF   sf;
44360a96aa3bSJed Brown     PetscInt *cids;
44370a96aa3bSJed Brown     PetscInt  dofPerDim[4] = {1, 1, 1, 1};
44380a96aa3bSJed Brown 
44399566063dSJacob Faibussowitsch     PetscCall(DMPforestGetPlex(dmCoarse, &plexC));
44409566063dSJacob Faibussowitsch     PetscCall(DMPforestGetPlex(dmFine, &plexF));
44419566063dSJacob Faibussowitsch     PetscCall(DMPforestGetTransferSF_Internal(dmCoarse, dmFine, dofPerDim, &sf, PETSC_TRUE, &cids));
44429566063dSJacob Faibussowitsch     PetscCall(PetscSFSetUp(sf));
44439566063dSJacob Faibussowitsch     PetscCall(DMPlexComputeInterpolatorTree(plexC, plexF, sf, cids, *interpolation));
44449566063dSJacob Faibussowitsch     PetscCall(PetscSFDestroy(&sf));
44459566063dSJacob Faibussowitsch     PetscCall(PetscFree(cids));
44460a96aa3bSJed Brown   }
44479566063dSJacob Faibussowitsch   PetscCall(MatViewFromOptions(*interpolation, NULL, "-interp_mat_view"));
44480a96aa3bSJed Brown   /* Use naive scaling */
44499566063dSJacob Faibussowitsch   PetscCall(DMCreateInterpolationScale(dmCoarse, dmFine, *interpolation, scaling));
44503ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
44510a96aa3bSJed Brown }
44520a96aa3bSJed Brown 
44530a96aa3bSJed Brown   #define DMCreateInjection_pforest _append_pforest(DMCreateInjection)
DMCreateInjection_pforest(DM dmCoarse,DM dmFine,Mat * injection)4454d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMCreateInjection_pforest(DM dmCoarse, DM dmFine, Mat *injection)
4455d71ae5a4SJacob Faibussowitsch {
44560a96aa3bSJed Brown   PetscSection gsc, gsf;
44570a96aa3bSJed Brown   PetscInt     m, n;
44580a96aa3bSJed Brown   DM           cdm;
44590a96aa3bSJed Brown 
44600a96aa3bSJed Brown   PetscFunctionBegin;
44619566063dSJacob Faibussowitsch   PetscCall(DMGetGlobalSection(dmFine, &gsf));
44629566063dSJacob Faibussowitsch   PetscCall(PetscSectionGetConstrainedStorageSize(gsf, &n));
44639566063dSJacob Faibussowitsch   PetscCall(DMGetGlobalSection(dmCoarse, &gsc));
44649566063dSJacob Faibussowitsch   PetscCall(PetscSectionGetConstrainedStorageSize(gsc, &m));
44650a96aa3bSJed Brown 
44669566063dSJacob Faibussowitsch   PetscCall(MatCreate(PetscObjectComm((PetscObject)dmFine), injection));
44679566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(*injection, m, n, PETSC_DETERMINE, PETSC_DETERMINE));
44689566063dSJacob Faibussowitsch   PetscCall(MatSetType(*injection, MATAIJ));
44690a96aa3bSJed Brown 
44709566063dSJacob Faibussowitsch   PetscCall(DMGetCoarseDM(dmFine, &cdm));
447108401ef6SPierre Jolivet   PetscCheck(cdm == dmCoarse, PetscObjectComm((PetscObject)dmFine), PETSC_ERR_SUP, "Only injection to coarse DM for now");
44720a96aa3bSJed Brown 
44730a96aa3bSJed Brown   {
44740a96aa3bSJed Brown     DM        plexF, plexC;
44750a96aa3bSJed Brown     PetscSF   sf;
44760a96aa3bSJed Brown     PetscInt *cids;
44770a96aa3bSJed Brown     PetscInt  dofPerDim[4] = {1, 1, 1, 1};
44780a96aa3bSJed Brown 
44799566063dSJacob Faibussowitsch     PetscCall(DMPforestGetPlex(dmCoarse, &plexC));
44809566063dSJacob Faibussowitsch     PetscCall(DMPforestGetPlex(dmFine, &plexF));
44819566063dSJacob Faibussowitsch     PetscCall(DMPforestGetTransferSF_Internal(dmCoarse, dmFine, dofPerDim, &sf, PETSC_TRUE, &cids));
44829566063dSJacob Faibussowitsch     PetscCall(PetscSFSetUp(sf));
44839566063dSJacob Faibussowitsch     PetscCall(DMPlexComputeInjectorTree(plexC, plexF, sf, cids, *injection));
44849566063dSJacob Faibussowitsch     PetscCall(PetscSFDestroy(&sf));
44859566063dSJacob Faibussowitsch     PetscCall(PetscFree(cids));
44860a96aa3bSJed Brown   }
44879566063dSJacob Faibussowitsch   PetscCall(MatViewFromOptions(*injection, NULL, "-inject_mat_view"));
44880a96aa3bSJed Brown   /* Use naive scaling */
44893ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
44900a96aa3bSJed Brown }
44910a96aa3bSJed Brown 
44920a96aa3bSJed Brown   #define DMForestTransferVecFromBase_pforest _append_pforest(DMForestTransferVecFromBase)
DMForestTransferVecFromBase_pforest(DM dm,Vec vecIn,Vec vecOut)4493d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMForestTransferVecFromBase_pforest(DM dm, Vec vecIn, Vec vecOut)
4494d71ae5a4SJacob Faibussowitsch {
44950a96aa3bSJed Brown   DM        dmIn, dmVecIn, base, basec, plex, coarseDM;
44960a96aa3bSJed Brown   DM       *hierarchy;
44970a96aa3bSJed Brown   PetscSF   sfRed = NULL;
44980a96aa3bSJed Brown   PetscDS   ds;
44990a96aa3bSJed Brown   Vec       vecInLocal, vecOutLocal;
45000a96aa3bSJed Brown   DMLabel   subpointMap;
45010a96aa3bSJed Brown   PetscInt  minLevel, mh, n_hi, i;
45020a96aa3bSJed Brown   PetscBool hiforest, *hierarchy_forest;
45030a96aa3bSJed Brown 
45040a96aa3bSJed Brown   PetscFunctionBegin;
45059566063dSJacob Faibussowitsch   PetscCall(VecGetDM(vecIn, &dmVecIn));
45069566063dSJacob Faibussowitsch   PetscCall(DMGetDS(dmVecIn, &ds));
450728b400f6SJacob Faibussowitsch   PetscCheck(ds, PetscObjectComm((PetscObject)dmVecIn), PETSC_ERR_SUP, "Cannot transfer without a PetscDS object");
45080a96aa3bSJed Brown   { /* we cannot stick user contexts into function callbacks for DMProjectFieldLocal! */
45090a96aa3bSJed Brown     PetscSection section;
45100a96aa3bSJed Brown     PetscInt     Nf;
45110a96aa3bSJed Brown 
45129566063dSJacob Faibussowitsch     PetscCall(DMGetLocalSection(dmVecIn, &section));
45139566063dSJacob Faibussowitsch     PetscCall(PetscSectionGetNumFields(section, &Nf));
451463a3b9bcSJacob Faibussowitsch     PetscCheck(Nf <= 3, PetscObjectComm((PetscObject)dmVecIn), PETSC_ERR_SUP, "Number of fields %" PetscInt_FMT " are currently not supported! Send an email at petsc-dev@mcs.anl.gov", Nf);
45150a96aa3bSJed Brown   }
45169566063dSJacob Faibussowitsch   PetscCall(DMForestGetMinimumRefinement(dm, &minLevel));
451763a3b9bcSJacob Faibussowitsch   PetscCheck(!minLevel, PetscObjectComm((PetscObject)dm), PETSC_ERR_SUP, "Cannot transfer with minimum refinement set to %" PetscInt_FMT ". Rerun with DMForestSetMinimumRefinement(dm,0)", minLevel);
45189566063dSJacob Faibussowitsch   PetscCall(DMForestGetBaseDM(dm, &base));
451928b400f6SJacob Faibussowitsch   PetscCheck(base, PetscObjectComm((PetscObject)dm), PETSC_ERR_SUP, "Missing base DM");
45200a96aa3bSJed Brown 
45219566063dSJacob Faibussowitsch   PetscCall(VecSet(vecOut, 0.0));
45220a96aa3bSJed Brown   if (dmVecIn == base) { /* sequential runs */
45239566063dSJacob Faibussowitsch     PetscCall(PetscObjectReference((PetscObject)vecIn));
45240a96aa3bSJed Brown   } else {
45250a96aa3bSJed Brown     PetscSection secIn, secInRed;
45260a96aa3bSJed Brown     Vec          vecInRed, vecInLocal;
45270a96aa3bSJed Brown 
45289566063dSJacob Faibussowitsch     PetscCall(PetscObjectQuery((PetscObject)base, "_base_migration_sf", (PetscObject *)&sfRed));
452928b400f6SJacob Faibussowitsch     PetscCheck(sfRed, PETSC_COMM_SELF, PETSC_ERR_SUP, "Not the DM set with DMForestSetBaseDM()");
45309566063dSJacob Faibussowitsch     PetscCall(PetscSectionCreate(PetscObjectComm((PetscObject)dmVecIn), &secInRed));
45319566063dSJacob Faibussowitsch     PetscCall(VecCreate(PETSC_COMM_SELF, &vecInRed));
45329566063dSJacob Faibussowitsch     PetscCall(DMGetLocalSection(dmVecIn, &secIn));
45339566063dSJacob Faibussowitsch     PetscCall(DMGetLocalVector(dmVecIn, &vecInLocal));
45349566063dSJacob Faibussowitsch     PetscCall(DMGlobalToLocalBegin(dmVecIn, vecIn, INSERT_VALUES, vecInLocal));
45359566063dSJacob Faibussowitsch     PetscCall(DMGlobalToLocalEnd(dmVecIn, vecIn, INSERT_VALUES, vecInLocal));
45369566063dSJacob Faibussowitsch     PetscCall(DMPlexDistributeField(dmVecIn, sfRed, secIn, vecInLocal, secInRed, vecInRed));
45379566063dSJacob Faibussowitsch     PetscCall(DMRestoreLocalVector(dmVecIn, &vecInLocal));
45389566063dSJacob Faibussowitsch     PetscCall(PetscSectionDestroy(&secInRed));
45390a96aa3bSJed Brown     vecIn = vecInRed;
45400a96aa3bSJed Brown   }
45410a96aa3bSJed Brown 
45420a96aa3bSJed Brown   /* we first search through the AdaptivityForest hierarchy
45430a96aa3bSJed Brown      once we found the first disconnected forest, we upsweep the DM hierarchy */
45440a96aa3bSJed Brown   hiforest = PETSC_TRUE;
45450a96aa3bSJed Brown 
45460a96aa3bSJed Brown   /* upsweep to the coarsest DM */
45470a96aa3bSJed Brown   n_hi     = 0;
45480a96aa3bSJed Brown   coarseDM = dm;
45490a96aa3bSJed Brown   do {
45500a96aa3bSJed Brown     PetscBool isforest;
45510a96aa3bSJed Brown 
45520a96aa3bSJed Brown     dmIn = coarseDM;
45530a96aa3bSJed Brown     /* need to call DMSetUp to have the hierarchy recursively setup */
45549566063dSJacob Faibussowitsch     PetscCall(DMSetUp(dmIn));
45559566063dSJacob Faibussowitsch     PetscCall(DMIsForest(dmIn, &isforest));
455628b400f6SJacob Faibussowitsch     PetscCheck(isforest, PetscObjectComm((PetscObject)dmIn), PETSC_ERR_SUP, "Cannot currently transfer through a mixed hierarchy! Found DM type %s", ((PetscObject)dmIn)->type_name);
45570a96aa3bSJed Brown     coarseDM = NULL;
455848a46eb9SPierre Jolivet     if (hiforest) PetscCall(DMForestGetAdaptivityForest(dmIn, &coarseDM));
45590a96aa3bSJed Brown     if (!coarseDM) { /* DMForest hierarchy ended, we keep upsweeping through the DM hierarchy */
45600a96aa3bSJed Brown       hiforest = PETSC_FALSE;
45619566063dSJacob Faibussowitsch       PetscCall(DMGetCoarseDM(dmIn, &coarseDM));
45620a96aa3bSJed Brown     }
45630a96aa3bSJed Brown     n_hi++;
45640a96aa3bSJed Brown   } while (coarseDM);
45650a96aa3bSJed Brown 
45669566063dSJacob Faibussowitsch   PetscCall(PetscMalloc2(n_hi, &hierarchy, n_hi, &hierarchy_forest));
45670a96aa3bSJed Brown 
45680a96aa3bSJed Brown   i        = 0;
45690a96aa3bSJed Brown   hiforest = PETSC_TRUE;
45700a96aa3bSJed Brown   coarseDM = dm;
45710a96aa3bSJed Brown   do {
45720a96aa3bSJed Brown     dmIn     = coarseDM;
45730a96aa3bSJed Brown     coarseDM = NULL;
457448a46eb9SPierre Jolivet     if (hiforest) PetscCall(DMForestGetAdaptivityForest(dmIn, &coarseDM));
45750a96aa3bSJed Brown     if (!coarseDM) { /* DMForest hierarchy ended, we keep upsweeping through the DM hierarchy */
45760a96aa3bSJed Brown       hiforest = PETSC_FALSE;
45779566063dSJacob Faibussowitsch       PetscCall(DMGetCoarseDM(dmIn, &coarseDM));
45780a96aa3bSJed Brown     }
45790a96aa3bSJed Brown     i++;
45800a96aa3bSJed Brown     hierarchy[n_hi - i] = dmIn;
45810a96aa3bSJed Brown   } while (coarseDM);
45820a96aa3bSJed Brown 
45830a96aa3bSJed Brown   /* project base vector on the coarsest forest (minimum refinement = 0) */
45849566063dSJacob Faibussowitsch   PetscCall(DMPforestGetPlex(dmIn, &plex));
45850a96aa3bSJed Brown 
45860a96aa3bSJed Brown   /* Check this plex is compatible with the base */
45870a96aa3bSJed Brown   {
45880a96aa3bSJed Brown     IS       gnum[2];
45890a96aa3bSJed Brown     PetscInt ncells[2], gncells[2];
45900a96aa3bSJed Brown 
45919566063dSJacob Faibussowitsch     PetscCall(DMPlexGetCellNumbering(base, &gnum[0]));
45929566063dSJacob Faibussowitsch     PetscCall(DMPlexGetCellNumbering(plex, &gnum[1]));
45939566063dSJacob Faibussowitsch     PetscCall(ISGetMinMax(gnum[0], NULL, &ncells[0]));
45949566063dSJacob Faibussowitsch     PetscCall(ISGetMinMax(gnum[1], NULL, &ncells[1]));
4595462c564dSBarry Smith     PetscCallMPI(MPIU_Allreduce(ncells, gncells, 2, MPIU_INT, MPI_MAX, PetscObjectComm((PetscObject)dm)));
459663a3b9bcSJacob Faibussowitsch     PetscCheck(gncells[0] == gncells[1], PetscObjectComm((PetscObject)dm), PETSC_ERR_SUP, "Invalid number of base cells! Expected %" PetscInt_FMT ", found %" PetscInt_FMT, gncells[0] + 1, gncells[1] + 1);
45970a96aa3bSJed Brown   }
45980a96aa3bSJed Brown 
45999566063dSJacob Faibussowitsch   PetscCall(DMGetLabel(dmIn, "_forest_base_subpoint_map", &subpointMap));
460028b400f6SJacob Faibussowitsch   PetscCheck(subpointMap, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Missing _forest_base_subpoint_map label");
46010a96aa3bSJed Brown 
46029566063dSJacob Faibussowitsch   PetscCall(DMPlexGetMaxProjectionHeight(base, &mh));
46039566063dSJacob Faibussowitsch   PetscCall(DMPlexSetMaxProjectionHeight(plex, mh));
46040a96aa3bSJed Brown 
46059566063dSJacob Faibussowitsch   PetscCall(DMClone(base, &basec));
46069566063dSJacob Faibussowitsch   PetscCall(DMCopyDisc(dmVecIn, basec));
46070a96aa3bSJed Brown   if (sfRed) {
46089566063dSJacob Faibussowitsch     PetscCall(PetscObjectReference((PetscObject)vecIn));
46090a96aa3bSJed Brown     vecInLocal = vecIn;
46100a96aa3bSJed Brown   } else {
46119566063dSJacob Faibussowitsch     PetscCall(DMCreateLocalVector(basec, &vecInLocal));
46129566063dSJacob Faibussowitsch     PetscCall(DMGlobalToLocalBegin(basec, vecIn, INSERT_VALUES, vecInLocal));
46139566063dSJacob Faibussowitsch     PetscCall(DMGlobalToLocalEnd(basec, vecIn, INSERT_VALUES, vecInLocal));
46140a96aa3bSJed Brown   }
46150a96aa3bSJed Brown 
46169566063dSJacob Faibussowitsch   PetscCall(DMGetLocalVector(dmIn, &vecOutLocal));
46170a96aa3bSJed Brown   { /* get degrees of freedom ordered onto dmIn */
46180a96aa3bSJed Brown     PetscSF            basetocoarse;
46190a96aa3bSJed Brown     PetscInt           bStart, bEnd, nroots;
46200a96aa3bSJed Brown     PetscInt           iStart, iEnd, nleaves, leaf;
46210a96aa3bSJed Brown     PetscMPIInt        rank;
46220a96aa3bSJed Brown     PetscSFNode       *remotes;
46230a96aa3bSJed Brown     PetscSection       secIn, secOut;
46240a96aa3bSJed Brown     PetscInt          *remoteOffsets;
46250a96aa3bSJed Brown     PetscSF            transferSF;
46260a96aa3bSJed Brown     const PetscScalar *inArray;
46270a96aa3bSJed Brown     PetscScalar       *outArray;
46280a96aa3bSJed Brown 
46299566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)basec), &rank));
46309566063dSJacob Faibussowitsch     PetscCall(DMPlexGetChart(basec, &bStart, &bEnd));
46310a96aa3bSJed Brown     nroots = PetscMax(bEnd - bStart, 0);
46329566063dSJacob Faibussowitsch     PetscCall(DMPlexGetChart(plex, &iStart, &iEnd));
46330a96aa3bSJed Brown     nleaves = PetscMax(iEnd - iStart, 0);
46340a96aa3bSJed Brown 
46359566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(nleaves, &remotes));
46360a96aa3bSJed Brown     for (leaf = iStart; leaf < iEnd; leaf++) {
46370a96aa3bSJed Brown       PetscInt index;
46380a96aa3bSJed Brown 
46390a96aa3bSJed Brown       remotes[leaf - iStart].rank = rank;
46409566063dSJacob Faibussowitsch       PetscCall(DMLabelGetValue(subpointMap, leaf, &index));
46410a96aa3bSJed Brown       remotes[leaf - iStart].index = index;
46420a96aa3bSJed Brown     }
46430a96aa3bSJed Brown 
46449566063dSJacob Faibussowitsch     PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)basec), &basetocoarse));
46459566063dSJacob Faibussowitsch     PetscCall(PetscSFSetGraph(basetocoarse, nroots, nleaves, NULL, PETSC_OWN_POINTER, remotes, PETSC_OWN_POINTER));
46469566063dSJacob Faibussowitsch     PetscCall(PetscSFSetUp(basetocoarse));
46479566063dSJacob Faibussowitsch     PetscCall(DMGetLocalSection(basec, &secIn));
46489566063dSJacob Faibussowitsch     PetscCall(PetscSectionCreate(PetscObjectComm((PetscObject)dmIn), &secOut));
46499566063dSJacob Faibussowitsch     PetscCall(PetscSFDistributeSection(basetocoarse, secIn, &remoteOffsets, secOut));
46509566063dSJacob Faibussowitsch     PetscCall(PetscSFCreateSectionSF(basetocoarse, secIn, remoteOffsets, secOut, &transferSF));
46519566063dSJacob Faibussowitsch     PetscCall(PetscFree(remoteOffsets));
46529566063dSJacob Faibussowitsch     PetscCall(VecGetArrayWrite(vecOutLocal, &outArray));
46539566063dSJacob Faibussowitsch     PetscCall(VecGetArrayRead(vecInLocal, &inArray));
46549566063dSJacob Faibussowitsch     PetscCall(PetscSFBcastBegin(transferSF, MPIU_SCALAR, inArray, outArray, MPI_REPLACE));
46559566063dSJacob Faibussowitsch     PetscCall(PetscSFBcastEnd(transferSF, MPIU_SCALAR, inArray, outArray, MPI_REPLACE));
46569566063dSJacob Faibussowitsch     PetscCall(VecRestoreArrayRead(vecInLocal, &inArray));
46579566063dSJacob Faibussowitsch     PetscCall(VecRestoreArrayWrite(vecOutLocal, &outArray));
46589566063dSJacob Faibussowitsch     PetscCall(PetscSFDestroy(&transferSF));
46599566063dSJacob Faibussowitsch     PetscCall(PetscSectionDestroy(&secOut));
46609566063dSJacob Faibussowitsch     PetscCall(PetscSFDestroy(&basetocoarse));
46610a96aa3bSJed Brown   }
46629566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&vecInLocal));
46639566063dSJacob Faibussowitsch   PetscCall(DMDestroy(&basec));
46649566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&vecIn));
46650a96aa3bSJed Brown 
46660a96aa3bSJed Brown   /* output */
46670a96aa3bSJed Brown   if (n_hi > 1) { /* downsweep the stored hierarchy */
46680a96aa3bSJed Brown     Vec vecOut1, vecOut2;
46690a96aa3bSJed Brown     DM  fineDM;
46700a96aa3bSJed Brown 
46719566063dSJacob Faibussowitsch     PetscCall(DMGetGlobalVector(dmIn, &vecOut1));
46729566063dSJacob Faibussowitsch     PetscCall(DMLocalToGlobal(dmIn, vecOutLocal, INSERT_VALUES, vecOut1));
46739566063dSJacob Faibussowitsch     PetscCall(DMRestoreLocalVector(dmIn, &vecOutLocal));
46740a96aa3bSJed Brown     for (i = 1; i < n_hi - 1; i++) {
46750a96aa3bSJed Brown       fineDM = hierarchy[i];
46769566063dSJacob Faibussowitsch       PetscCall(DMGetGlobalVector(fineDM, &vecOut2));
46779566063dSJacob Faibussowitsch       PetscCall(DMForestTransferVec(dmIn, vecOut1, fineDM, vecOut2, PETSC_TRUE, 0.0));
46789566063dSJacob Faibussowitsch       PetscCall(DMRestoreGlobalVector(dmIn, &vecOut1));
46790a96aa3bSJed Brown       vecOut1 = vecOut2;
46800a96aa3bSJed Brown       dmIn    = fineDM;
46810a96aa3bSJed Brown     }
46829566063dSJacob Faibussowitsch     PetscCall(DMForestTransferVec(dmIn, vecOut1, dm, vecOut, PETSC_TRUE, 0.0));
46839566063dSJacob Faibussowitsch     PetscCall(DMRestoreGlobalVector(dmIn, &vecOut1));
46840a96aa3bSJed Brown   } else {
46859566063dSJacob Faibussowitsch     PetscCall(DMLocalToGlobal(dmIn, vecOutLocal, INSERT_VALUES, vecOut));
46869566063dSJacob Faibussowitsch     PetscCall(DMRestoreLocalVector(dmIn, &vecOutLocal));
46870a96aa3bSJed Brown   }
46889566063dSJacob Faibussowitsch   PetscCall(PetscFree2(hierarchy, hierarchy_forest));
46893ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
46900a96aa3bSJed Brown }
46910a96aa3bSJed Brown 
46920a96aa3bSJed Brown   #define DMForestTransferVec_pforest _append_pforest(DMForestTransferVec)
DMForestTransferVec_pforest(DM dmIn,Vec vecIn,DM dmOut,Vec vecOut,PetscBool useBCs,PetscReal time)4693d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMForestTransferVec_pforest(DM dmIn, Vec vecIn, DM dmOut, Vec vecOut, PetscBool useBCs, PetscReal time)
4694d71ae5a4SJacob Faibussowitsch {
46950a96aa3bSJed Brown   DM          adaptIn, adaptOut, plexIn, plexOut;
46960a96aa3bSJed Brown   DM_Forest  *forestIn, *forestOut, *forestAdaptIn, *forestAdaptOut;
46970a96aa3bSJed Brown   PetscInt    dofPerDim[] = {1, 1, 1, 1};
46980a96aa3bSJed Brown   PetscSF     inSF = NULL, outSF = NULL;
46990a96aa3bSJed Brown   PetscInt   *inCids = NULL, *outCids = NULL;
47000a96aa3bSJed Brown   DMAdaptFlag purposeIn, purposeOut;
47010a96aa3bSJed Brown 
47020a96aa3bSJed Brown   PetscFunctionBegin;
47030a96aa3bSJed Brown   forestOut = (DM_Forest *)dmOut->data;
47040a96aa3bSJed Brown   forestIn  = (DM_Forest *)dmIn->data;
47050a96aa3bSJed Brown 
47069566063dSJacob Faibussowitsch   PetscCall(DMForestGetAdaptivityForest(dmOut, &adaptOut));
47079566063dSJacob Faibussowitsch   PetscCall(DMForestGetAdaptivityPurpose(dmOut, &purposeOut));
47080a96aa3bSJed Brown   forestAdaptOut = adaptOut ? (DM_Forest *)adaptOut->data : NULL;
47090a96aa3bSJed Brown 
47109566063dSJacob Faibussowitsch   PetscCall(DMForestGetAdaptivityForest(dmIn, &adaptIn));
47119566063dSJacob Faibussowitsch   PetscCall(DMForestGetAdaptivityPurpose(dmIn, &purposeIn));
47120a96aa3bSJed Brown   forestAdaptIn = adaptIn ? (DM_Forest *)adaptIn->data : NULL;
47130a96aa3bSJed Brown 
47140a96aa3bSJed Brown   if (forestAdaptOut == forestIn) {
47150a96aa3bSJed Brown     switch (purposeOut) {
47160a96aa3bSJed Brown     case DM_ADAPT_REFINE:
47179566063dSJacob Faibussowitsch       PetscCall(DMPforestGetTransferSF_Internal(dmIn, dmOut, dofPerDim, &inSF, PETSC_TRUE, &inCids));
47189566063dSJacob Faibussowitsch       PetscCall(PetscSFSetUp(inSF));
47190a96aa3bSJed Brown       break;
47200a96aa3bSJed Brown     case DM_ADAPT_COARSEN:
47210a96aa3bSJed Brown     case DM_ADAPT_COARSEN_LAST:
47229566063dSJacob Faibussowitsch       PetscCall(DMPforestGetTransferSF_Internal(dmOut, dmIn, dofPerDim, &outSF, PETSC_TRUE, &outCids));
47239566063dSJacob Faibussowitsch       PetscCall(PetscSFSetUp(outSF));
47240a96aa3bSJed Brown       break;
47250a96aa3bSJed Brown     default:
47269566063dSJacob Faibussowitsch       PetscCall(DMPforestGetTransferSF_Internal(dmIn, dmOut, dofPerDim, &inSF, PETSC_TRUE, &inCids));
47279566063dSJacob Faibussowitsch       PetscCall(DMPforestGetTransferSF_Internal(dmOut, dmIn, dofPerDim, &outSF, PETSC_FALSE, &outCids));
47289566063dSJacob Faibussowitsch       PetscCall(PetscSFSetUp(inSF));
47299566063dSJacob Faibussowitsch       PetscCall(PetscSFSetUp(outSF));
47300a96aa3bSJed Brown     }
47310a96aa3bSJed Brown   } else if (forestAdaptIn == forestOut) {
47320a96aa3bSJed Brown     switch (purposeIn) {
47330a96aa3bSJed Brown     case DM_ADAPT_REFINE:
47349566063dSJacob Faibussowitsch       PetscCall(DMPforestGetTransferSF_Internal(dmOut, dmIn, dofPerDim, &outSF, PETSC_TRUE, &inCids));
47359566063dSJacob Faibussowitsch       PetscCall(PetscSFSetUp(outSF));
47360a96aa3bSJed Brown       break;
47370a96aa3bSJed Brown     case DM_ADAPT_COARSEN:
47380a96aa3bSJed Brown     case DM_ADAPT_COARSEN_LAST:
47399566063dSJacob Faibussowitsch       PetscCall(DMPforestGetTransferSF_Internal(dmIn, dmOut, dofPerDim, &inSF, PETSC_TRUE, &inCids));
47409566063dSJacob Faibussowitsch       PetscCall(PetscSFSetUp(inSF));
47410a96aa3bSJed Brown       break;
47420a96aa3bSJed Brown     default:
47439566063dSJacob Faibussowitsch       PetscCall(DMPforestGetTransferSF_Internal(dmIn, dmOut, dofPerDim, &inSF, PETSC_TRUE, &inCids));
47449566063dSJacob Faibussowitsch       PetscCall(DMPforestGetTransferSF_Internal(dmOut, dmIn, dofPerDim, &outSF, PETSC_FALSE, &outCids));
47459566063dSJacob Faibussowitsch       PetscCall(PetscSFSetUp(inSF));
47469566063dSJacob Faibussowitsch       PetscCall(PetscSFSetUp(outSF));
47470a96aa3bSJed Brown     }
47480a96aa3bSJed Brown   } else SETERRQ(PetscObjectComm((PetscObject)dmIn), PETSC_ERR_SUP, "Only support transfer from pre-adaptivity to post-adaptivity right now");
47499566063dSJacob Faibussowitsch   PetscCall(DMPforestGetPlex(dmIn, &plexIn));
47509566063dSJacob Faibussowitsch   PetscCall(DMPforestGetPlex(dmOut, &plexOut));
47510a96aa3bSJed Brown 
47529566063dSJacob Faibussowitsch   PetscCall(DMPlexTransferVecTree(plexIn, vecIn, plexOut, vecOut, inSF, outSF, inCids, outCids, useBCs, time));
47539566063dSJacob Faibussowitsch   PetscCall(PetscFree(inCids));
47549566063dSJacob Faibussowitsch   PetscCall(PetscFree(outCids));
47559566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&inSF));
47569566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&outSF));
47579566063dSJacob Faibussowitsch   PetscCall(PetscFree(inCids));
47589566063dSJacob Faibussowitsch   PetscCall(PetscFree(outCids));
47593ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
47600a96aa3bSJed Brown }
47610a96aa3bSJed Brown 
47620a96aa3bSJed Brown   #define DMCreateCoordinateDM_pforest _append_pforest(DMCreateCoordinateDM)
DMCreateCoordinateDM_pforest(DM dm,DM * cdm)4763d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMCreateCoordinateDM_pforest(DM dm, DM *cdm)
4764d71ae5a4SJacob Faibussowitsch {
47650a96aa3bSJed Brown   DM plex;
47660a96aa3bSJed Brown 
47670a96aa3bSJed Brown   PetscFunctionBegin;
47680a96aa3bSJed Brown   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
47699566063dSJacob Faibussowitsch   PetscCall(DMPforestGetPlex(dm, &plex));
47709566063dSJacob Faibussowitsch   PetscCall(DMGetCoordinateDM(plex, cdm));
47719566063dSJacob Faibussowitsch   PetscCall(PetscObjectReference((PetscObject)*cdm));
47723ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
47730a96aa3bSJed Brown }
47740a96aa3bSJed Brown 
47750a96aa3bSJed Brown   #define VecViewLocal_pforest _append_pforest(VecViewLocal)
VecViewLocal_pforest(Vec vec,PetscViewer viewer)4776d71ae5a4SJacob Faibussowitsch static PetscErrorCode VecViewLocal_pforest(Vec vec, PetscViewer viewer)
4777d71ae5a4SJacob Faibussowitsch {
47780a96aa3bSJed Brown   DM dm, plex;
47790a96aa3bSJed Brown 
47800a96aa3bSJed Brown   PetscFunctionBegin;
47819566063dSJacob Faibussowitsch   PetscCall(VecGetDM(vec, &dm));
4782217f96c1SStefano Zampini   PetscCall(PetscObjectReference((PetscObject)dm));
47839566063dSJacob Faibussowitsch   PetscCall(DMPforestGetPlex(dm, &plex));
47849566063dSJacob Faibussowitsch   PetscCall(VecSetDM(vec, plex));
47859566063dSJacob Faibussowitsch   PetscCall(VecView_Plex_Local(vec, viewer));
47869566063dSJacob Faibussowitsch   PetscCall(VecSetDM(vec, dm));
4787217f96c1SStefano Zampini   PetscCall(DMDestroy(&dm));
47883ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
47890a96aa3bSJed Brown }
47900a96aa3bSJed Brown 
47910a96aa3bSJed Brown   #define VecView_pforest _append_pforest(VecView)
VecView_pforest(Vec vec,PetscViewer viewer)4792d71ae5a4SJacob Faibussowitsch static PetscErrorCode VecView_pforest(Vec vec, PetscViewer viewer)
4793d71ae5a4SJacob Faibussowitsch {
47940a96aa3bSJed Brown   DM dm, plex;
47950a96aa3bSJed Brown 
47960a96aa3bSJed Brown   PetscFunctionBegin;
47979566063dSJacob Faibussowitsch   PetscCall(VecGetDM(vec, &dm));
4798217f96c1SStefano Zampini   PetscCall(PetscObjectReference((PetscObject)dm));
47999566063dSJacob Faibussowitsch   PetscCall(DMPforestGetPlex(dm, &plex));
48009566063dSJacob Faibussowitsch   PetscCall(VecSetDM(vec, plex));
48019566063dSJacob Faibussowitsch   PetscCall(VecView_Plex(vec, viewer));
48029566063dSJacob Faibussowitsch   PetscCall(VecSetDM(vec, dm));
4803217f96c1SStefano Zampini   PetscCall(DMDestroy(&dm));
48043ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
48050a96aa3bSJed Brown }
48060a96aa3bSJed Brown 
48070a96aa3bSJed Brown   #define VecView_pforest_Native _infix_pforest(VecView, _Native)
VecView_pforest_Native(Vec vec,PetscViewer viewer)4808d71ae5a4SJacob Faibussowitsch static PetscErrorCode VecView_pforest_Native(Vec vec, PetscViewer viewer)
4809d71ae5a4SJacob Faibussowitsch {
48100a96aa3bSJed Brown   DM dm, plex;
48110a96aa3bSJed Brown 
48120a96aa3bSJed Brown   PetscFunctionBegin;
48139566063dSJacob Faibussowitsch   PetscCall(VecGetDM(vec, &dm));
4814217f96c1SStefano Zampini   PetscCall(PetscObjectReference((PetscObject)dm));
48159566063dSJacob Faibussowitsch   PetscCall(DMPforestGetPlex(dm, &plex));
48169566063dSJacob Faibussowitsch   PetscCall(VecSetDM(vec, plex));
48179566063dSJacob Faibussowitsch   PetscCall(VecView_Plex_Native(vec, viewer));
48189566063dSJacob Faibussowitsch   PetscCall(VecSetDM(vec, dm));
4819217f96c1SStefano Zampini   PetscCall(DMDestroy(&dm));
48203ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
48210a96aa3bSJed Brown }
48220a96aa3bSJed Brown 
48230a96aa3bSJed Brown   #define VecLoad_pforest _append_pforest(VecLoad)
VecLoad_pforest(Vec vec,PetscViewer viewer)4824d71ae5a4SJacob Faibussowitsch static PetscErrorCode VecLoad_pforest(Vec vec, PetscViewer viewer)
4825d71ae5a4SJacob Faibussowitsch {
48260a96aa3bSJed Brown   DM dm, plex;
48270a96aa3bSJed Brown 
48280a96aa3bSJed Brown   PetscFunctionBegin;
48299566063dSJacob Faibussowitsch   PetscCall(VecGetDM(vec, &dm));
4830217f96c1SStefano Zampini   PetscCall(PetscObjectReference((PetscObject)dm));
48319566063dSJacob Faibussowitsch   PetscCall(DMPforestGetPlex(dm, &plex));
48329566063dSJacob Faibussowitsch   PetscCall(VecSetDM(vec, plex));
48339566063dSJacob Faibussowitsch   PetscCall(VecLoad_Plex(vec, viewer));
48349566063dSJacob Faibussowitsch   PetscCall(VecSetDM(vec, dm));
4835217f96c1SStefano Zampini   PetscCall(DMDestroy(&dm));
48363ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
48370a96aa3bSJed Brown }
48380a96aa3bSJed Brown 
48390a96aa3bSJed Brown   #define VecLoad_pforest_Native _infix_pforest(VecLoad, _Native)
VecLoad_pforest_Native(Vec vec,PetscViewer viewer)4840d71ae5a4SJacob Faibussowitsch static PetscErrorCode VecLoad_pforest_Native(Vec vec, PetscViewer viewer)
4841d71ae5a4SJacob Faibussowitsch {
48420a96aa3bSJed Brown   DM dm, plex;
48430a96aa3bSJed Brown 
48440a96aa3bSJed Brown   PetscFunctionBegin;
48459566063dSJacob Faibussowitsch   PetscCall(VecGetDM(vec, &dm));
4846217f96c1SStefano Zampini   PetscCall(PetscObjectReference((PetscObject)dm));
48479566063dSJacob Faibussowitsch   PetscCall(DMPforestGetPlex(dm, &plex));
48489566063dSJacob Faibussowitsch   PetscCall(VecSetDM(vec, plex));
48499566063dSJacob Faibussowitsch   PetscCall(VecLoad_Plex_Native(vec, viewer));
48509566063dSJacob Faibussowitsch   PetscCall(VecSetDM(vec, dm));
4851217f96c1SStefano Zampini   PetscCall(DMDestroy(&dm));
48523ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
48530a96aa3bSJed Brown }
48540a96aa3bSJed Brown 
48550a96aa3bSJed Brown   #define DMCreateGlobalVector_pforest _append_pforest(DMCreateGlobalVector)
DMCreateGlobalVector_pforest(DM dm,Vec * vec)4856d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMCreateGlobalVector_pforest(DM dm, Vec *vec)
4857d71ae5a4SJacob Faibussowitsch {
48580a96aa3bSJed Brown   PetscFunctionBegin;
48599566063dSJacob Faibussowitsch   PetscCall(DMCreateGlobalVector_Section_Private(dm, vec));
48609566063dSJacob Faibussowitsch   /* PetscCall(VecSetOperation(*vec, VECOP_DUPLICATE, (void(*)(void)) VecDuplicate_MPI_DM)); */
486157d50842SBarry Smith   PetscCall(VecSetOperation(*vec, VECOP_VIEW, (PetscErrorCodeFn *)VecView_pforest));
486257d50842SBarry Smith   PetscCall(VecSetOperation(*vec, VECOP_VIEWNATIVE, (PetscErrorCodeFn *)VecView_pforest_Native));
486357d50842SBarry Smith   PetscCall(VecSetOperation(*vec, VECOP_LOAD, (PetscErrorCodeFn *)VecLoad_pforest));
486457d50842SBarry Smith   PetscCall(VecSetOperation(*vec, VECOP_LOADNATIVE, (PetscErrorCodeFn *)VecLoad_pforest_Native));
48653ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
48660a96aa3bSJed Brown }
48670a96aa3bSJed Brown 
48680a96aa3bSJed Brown   #define DMCreateLocalVector_pforest _append_pforest(DMCreateLocalVector)
DMCreateLocalVector_pforest(DM dm,Vec * vec)4869d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMCreateLocalVector_pforest(DM dm, Vec *vec)
4870d71ae5a4SJacob Faibussowitsch {
48710a96aa3bSJed Brown   PetscFunctionBegin;
48729566063dSJacob Faibussowitsch   PetscCall(DMCreateLocalVector_Section_Private(dm, vec));
487357d50842SBarry Smith   PetscCall(VecSetOperation(*vec, VECOP_VIEW, (PetscErrorCodeFn *)VecViewLocal_pforest));
48743ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
48750a96aa3bSJed Brown }
48760a96aa3bSJed Brown 
48770a96aa3bSJed Brown   #define DMCreateMatrix_pforest _append_pforest(DMCreateMatrix)
DMCreateMatrix_pforest(DM dm,Mat * mat)4878d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMCreateMatrix_pforest(DM dm, Mat *mat)
4879d71ae5a4SJacob Faibussowitsch {
48800a96aa3bSJed Brown   DM plex;
48810a96aa3bSJed Brown 
48820a96aa3bSJed Brown   PetscFunctionBegin;
48830a96aa3bSJed Brown   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
48849566063dSJacob Faibussowitsch   PetscCall(DMPforestGetPlex(dm, &plex));
48850a96aa3bSJed Brown   if (plex->prealloc_only != dm->prealloc_only) plex->prealloc_only = dm->prealloc_only; /* maybe this should go into forest->plex */
48862495aca6SStefano Zampini   PetscCall(DMSetMatType(plex, dm->mattype));
48879566063dSJacob Faibussowitsch   PetscCall(DMCreateMatrix(plex, mat));
48889566063dSJacob Faibussowitsch   PetscCall(MatSetDM(*mat, dm));
48893ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
48900a96aa3bSJed Brown }
48910a96aa3bSJed Brown 
48920a96aa3bSJed Brown   #define DMProjectFunctionLocal_pforest _append_pforest(DMProjectFunctionLocal)
DMProjectFunctionLocal_pforest(DM dm,PetscReal time,PetscErrorCode (** funcs)(PetscInt,PetscReal,const PetscReal[],PetscInt,PetscScalar *,void *),void ** ctxs,InsertMode mode,Vec localX)4893d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMProjectFunctionLocal_pforest(DM dm, PetscReal time, PetscErrorCode (**funcs)(PetscInt, PetscReal, const PetscReal[], PetscInt, PetscScalar *, void *), void **ctxs, InsertMode mode, Vec localX)
4894d71ae5a4SJacob Faibussowitsch {
48950a96aa3bSJed Brown   DM plex;
48960a96aa3bSJed Brown 
48970a96aa3bSJed Brown   PetscFunctionBegin;
48980a96aa3bSJed Brown   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
48999566063dSJacob Faibussowitsch   PetscCall(DMPforestGetPlex(dm, &plex));
49009566063dSJacob Faibussowitsch   PetscCall(DMProjectFunctionLocal(plex, time, funcs, ctxs, mode, localX));
49013ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
49020a96aa3bSJed Brown }
49030a96aa3bSJed Brown 
49040a96aa3bSJed Brown   #define DMProjectFunctionLabelLocal_pforest _append_pforest(DMProjectFunctionLabelLocal)
DMProjectFunctionLabelLocal_pforest(DM dm,PetscReal time,DMLabel label,PetscInt numIds,const PetscInt ids[],PetscInt Ncc,const PetscInt comps[],PetscErrorCode (** funcs)(PetscInt,PetscReal,const PetscReal[],PetscInt,PetscScalar *,void *),void ** ctxs,InsertMode mode,Vec localX)4905d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMProjectFunctionLabelLocal_pforest(DM dm, PetscReal time, DMLabel label, PetscInt numIds, const PetscInt ids[], PetscInt Ncc, const PetscInt comps[], PetscErrorCode (**funcs)(PetscInt, PetscReal, const PetscReal[], PetscInt, PetscScalar *, void *), void **ctxs, InsertMode mode, Vec localX)
4906d71ae5a4SJacob Faibussowitsch {
49070a96aa3bSJed Brown   DM plex;
49080a96aa3bSJed Brown 
49090a96aa3bSJed Brown   PetscFunctionBegin;
49100a96aa3bSJed Brown   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
49119566063dSJacob Faibussowitsch   PetscCall(DMPforestGetPlex(dm, &plex));
49129566063dSJacob Faibussowitsch   PetscCall(DMProjectFunctionLabelLocal(plex, time, label, numIds, ids, Ncc, comps, funcs, ctxs, mode, localX));
49133ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
49140a96aa3bSJed Brown }
49150a96aa3bSJed Brown 
49160a96aa3bSJed Brown   #define DMProjectFieldLocal_pforest _append_pforest(DMProjectFieldLocal)
DMProjectFieldLocal_pforest(DM dm,PetscReal time,Vec localU,void (** funcs)(PetscInt,PetscInt,PetscInt,const PetscInt[],const PetscInt[],const PetscScalar[],const PetscScalar[],const PetscScalar[],const PetscInt[],const PetscInt[],const PetscScalar[],const PetscScalar[],const PetscScalar[],PetscReal,const PetscReal[],PetscInt,const PetscScalar[],PetscScalar[]),InsertMode mode,Vec localX)4917d71ae5a4SJacob Faibussowitsch PetscErrorCode DMProjectFieldLocal_pforest(DM dm, PetscReal time, Vec localU, void (**funcs)(PetscInt, PetscInt, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], PetscReal, const PetscReal[], PetscInt, const PetscScalar[], PetscScalar[]), InsertMode mode, Vec localX)
4918d71ae5a4SJacob Faibussowitsch {
49190a96aa3bSJed Brown   DM plex;
49200a96aa3bSJed Brown 
49210a96aa3bSJed Brown   PetscFunctionBegin;
49220a96aa3bSJed Brown   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
49239566063dSJacob Faibussowitsch   PetscCall(DMPforestGetPlex(dm, &plex));
49249566063dSJacob Faibussowitsch   PetscCall(DMProjectFieldLocal(plex, time, localU, funcs, mode, localX));
49253ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
49260a96aa3bSJed Brown }
49270a96aa3bSJed Brown 
49280a96aa3bSJed Brown   #define DMComputeL2Diff_pforest _append_pforest(DMComputeL2Diff)
DMComputeL2Diff_pforest(DM dm,PetscReal time,PetscErrorCode (** funcs)(PetscInt,PetscReal,const PetscReal[],PetscInt,PetscScalar *,void *),void ** ctxs,Vec X,PetscReal * diff)4929d71ae5a4SJacob Faibussowitsch PetscErrorCode DMComputeL2Diff_pforest(DM dm, PetscReal time, PetscErrorCode (**funcs)(PetscInt, PetscReal, const PetscReal[], PetscInt, PetscScalar *, void *), void **ctxs, Vec X, PetscReal *diff)
4930d71ae5a4SJacob Faibussowitsch {
49310a96aa3bSJed Brown   DM plex;
49320a96aa3bSJed Brown 
49330a96aa3bSJed Brown   PetscFunctionBegin;
49340a96aa3bSJed Brown   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
49359566063dSJacob Faibussowitsch   PetscCall(DMPforestGetPlex(dm, &plex));
49369566063dSJacob Faibussowitsch   PetscCall(DMComputeL2Diff(plex, time, funcs, ctxs, X, diff));
49373ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
49380a96aa3bSJed Brown }
49390a96aa3bSJed Brown 
49400a96aa3bSJed Brown   #define DMComputeL2FieldDiff_pforest _append_pforest(DMComputeL2FieldDiff)
DMComputeL2FieldDiff_pforest(DM dm,PetscReal time,PetscErrorCode (** funcs)(PetscInt,PetscReal,const PetscReal[],PetscInt,PetscScalar *,void *),void ** ctxs,Vec X,PetscReal diff[])4941d71ae5a4SJacob Faibussowitsch PetscErrorCode DMComputeL2FieldDiff_pforest(DM dm, PetscReal time, PetscErrorCode (**funcs)(PetscInt, PetscReal, const PetscReal[], PetscInt, PetscScalar *, void *), void **ctxs, Vec X, PetscReal diff[])
4942d71ae5a4SJacob Faibussowitsch {
49430a96aa3bSJed Brown   DM plex;
49440a96aa3bSJed Brown 
49450a96aa3bSJed Brown   PetscFunctionBegin;
49460a96aa3bSJed Brown   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
49479566063dSJacob Faibussowitsch   PetscCall(DMPforestGetPlex(dm, &plex));
49489566063dSJacob Faibussowitsch   PetscCall(DMComputeL2FieldDiff(plex, time, funcs, ctxs, X, diff));
49493ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
49500a96aa3bSJed Brown }
49510a96aa3bSJed Brown 
49520a96aa3bSJed Brown   #define DMCreatelocalsection_pforest _append_pforest(DMCreatelocalsection)
DMCreatelocalsection_pforest(DM dm)4953d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMCreatelocalsection_pforest(DM dm)
4954d71ae5a4SJacob Faibussowitsch {
49550a96aa3bSJed Brown   DM           plex;
49560a96aa3bSJed Brown   PetscSection section;
49570a96aa3bSJed Brown 
49580a96aa3bSJed Brown   PetscFunctionBegin;
49590a96aa3bSJed Brown   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
49609566063dSJacob Faibussowitsch   PetscCall(DMPforestGetPlex(dm, &plex));
49619566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(plex, &section));
49629566063dSJacob Faibussowitsch   PetscCall(DMSetLocalSection(dm, section));
49633ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
49640a96aa3bSJed Brown }
49650a96aa3bSJed Brown 
49660a96aa3bSJed Brown   #define DMCreateDefaultConstraints_pforest _append_pforest(DMCreateDefaultConstraints)
DMCreateDefaultConstraints_pforest(DM dm)4967d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMCreateDefaultConstraints_pforest(DM dm)
4968d71ae5a4SJacob Faibussowitsch {
49690a96aa3bSJed Brown   DM           plex;
49700a96aa3bSJed Brown   Mat          mat;
497179769bd5SJed Brown   Vec          bias;
49720a96aa3bSJed Brown   PetscSection section;
49730a96aa3bSJed Brown 
49740a96aa3bSJed Brown   PetscFunctionBegin;
49750a96aa3bSJed Brown   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
49769566063dSJacob Faibussowitsch   PetscCall(DMPforestGetPlex(dm, &plex));
49779566063dSJacob Faibussowitsch   PetscCall(DMGetDefaultConstraints(plex, &section, &mat, &bias));
49789566063dSJacob Faibussowitsch   PetscCall(DMSetDefaultConstraints(dm, section, mat, bias));
49793ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
49800a96aa3bSJed Brown }
49810a96aa3bSJed Brown 
49820a96aa3bSJed Brown   #define DMGetDimPoints_pforest _append_pforest(DMGetDimPoints)
DMGetDimPoints_pforest(DM dm,PetscInt dim,PetscInt * cStart,PetscInt * cEnd)4983d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMGetDimPoints_pforest(DM dm, PetscInt dim, PetscInt *cStart, PetscInt *cEnd)
4984d71ae5a4SJacob Faibussowitsch {
49850a96aa3bSJed Brown   DM plex;
49860a96aa3bSJed Brown 
49870a96aa3bSJed Brown   PetscFunctionBegin;
49880a96aa3bSJed Brown   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
49899566063dSJacob Faibussowitsch   PetscCall(DMPforestGetPlex(dm, &plex));
49909566063dSJacob Faibussowitsch   PetscCall(DMGetDimPoints(plex, dim, cStart, cEnd));
49913ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
49920a96aa3bSJed Brown }
49930a96aa3bSJed Brown 
49940a96aa3bSJed Brown   /* Need to forward declare */
49950a96aa3bSJed Brown   #define DMInitialize_pforest _append_pforest(DMInitialize)
49960a96aa3bSJed Brown static PetscErrorCode DMInitialize_pforest(DM dm);
49970a96aa3bSJed Brown 
49980a96aa3bSJed Brown   #define DMClone_pforest _append_pforest(DMClone)
DMClone_pforest(DM dm,DM * newdm)4999d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMClone_pforest(DM dm, DM *newdm)
5000d71ae5a4SJacob Faibussowitsch {
50010a96aa3bSJed Brown   PetscFunctionBegin;
50029566063dSJacob Faibussowitsch   PetscCall(DMClone_Forest(dm, newdm));
50039566063dSJacob Faibussowitsch   PetscCall(DMInitialize_pforest(*newdm));
50043ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
50050a96aa3bSJed Brown }
50060a96aa3bSJed Brown 
50070a96aa3bSJed Brown   #define DMForestCreateCellChart_pforest _append_pforest(DMForestCreateCellChart)
DMForestCreateCellChart_pforest(DM dm,PetscInt * cStart,PetscInt * cEnd)5008d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMForestCreateCellChart_pforest(DM dm, PetscInt *cStart, PetscInt *cEnd)
5009d71ae5a4SJacob Faibussowitsch {
50100a96aa3bSJed Brown   DM_Forest         *forest;
50110a96aa3bSJed Brown   DM_Forest_pforest *pforest;
50120a96aa3bSJed Brown   PetscInt           overlap;
50130a96aa3bSJed Brown 
50140a96aa3bSJed Brown   PetscFunctionBegin;
50159566063dSJacob Faibussowitsch   PetscCall(DMSetUp(dm));
50160a96aa3bSJed Brown   forest  = (DM_Forest *)dm->data;
50170a96aa3bSJed Brown   pforest = (DM_Forest_pforest *)forest->data;
50180a96aa3bSJed Brown   *cStart = 0;
50199566063dSJacob Faibussowitsch   PetscCall(DMForestGetPartitionOverlap(dm, &overlap));
50200a96aa3bSJed Brown   if (overlap && pforest->ghost) {
50210a96aa3bSJed Brown     *cEnd = pforest->forest->local_num_quadrants + pforest->ghost->proc_offsets[pforest->forest->mpisize];
50220a96aa3bSJed Brown   } else {
50230a96aa3bSJed Brown     *cEnd = pforest->forest->local_num_quadrants;
50240a96aa3bSJed Brown   }
50253ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
50260a96aa3bSJed Brown }
50270a96aa3bSJed Brown 
50280a96aa3bSJed Brown   #define DMForestCreateCellSF_pforest _append_pforest(DMForestCreateCellSF)
DMForestCreateCellSF_pforest(DM dm,PetscSF * cellSF)5029d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMForestCreateCellSF_pforest(DM dm, PetscSF *cellSF)
5030d71ae5a4SJacob Faibussowitsch {
50310a96aa3bSJed Brown   DM_Forest         *forest;
50320a96aa3bSJed Brown   DM_Forest_pforest *pforest;
50330a96aa3bSJed Brown   PetscMPIInt        rank;
50340a96aa3bSJed Brown   PetscInt           overlap;
50350a96aa3bSJed Brown   PetscInt           cStart, cEnd, cLocalStart, cLocalEnd;
50360a96aa3bSJed Brown   PetscInt           nRoots, nLeaves, *mine = NULL;
50370a96aa3bSJed Brown   PetscSFNode       *remote = NULL;
50380a96aa3bSJed Brown   PetscSF            sf;
50390a96aa3bSJed Brown 
50400a96aa3bSJed Brown   PetscFunctionBegin;
50419566063dSJacob Faibussowitsch   PetscCall(DMForestGetCellChart(dm, &cStart, &cEnd));
50420a96aa3bSJed Brown   forest      = (DM_Forest *)dm->data;
50430a96aa3bSJed Brown   pforest     = (DM_Forest_pforest *)forest->data;
50440a96aa3bSJed Brown   nRoots      = cEnd - cStart;
50450a96aa3bSJed Brown   cLocalStart = pforest->cLocalStart;
50460a96aa3bSJed Brown   cLocalEnd   = pforest->cLocalEnd;
50470a96aa3bSJed Brown   nLeaves     = 0;
50489566063dSJacob Faibussowitsch   PetscCall(DMForestGetPartitionOverlap(dm, &overlap));
50499566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)dm), &rank));
50500a96aa3bSJed Brown   if (overlap && pforest->ghost) {
50510a96aa3bSJed Brown     PetscSFNode      *mirror;
50520a96aa3bSJed Brown     p4est_quadrant_t *mirror_array;
50530a96aa3bSJed Brown     PetscInt          nMirror, nGhostPre, nSelf, q;
50540a96aa3bSJed Brown     void            **mirrorPtrs;
50550a96aa3bSJed Brown 
50560a96aa3bSJed Brown     nMirror   = (PetscInt)pforest->ghost->mirrors.elem_count;
50570a96aa3bSJed Brown     nSelf     = cLocalEnd - cLocalStart;
50580a96aa3bSJed Brown     nLeaves   = nRoots - nSelf;
50590a96aa3bSJed Brown     nGhostPre = (PetscInt)pforest->ghost->proc_offsets[rank];
50609566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(nLeaves, &mine));
50619566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(nLeaves, &remote));
50629566063dSJacob Faibussowitsch     PetscCall(PetscMalloc2(nMirror, &mirror, nMirror, &mirrorPtrs));
50630a96aa3bSJed Brown     mirror_array = (p4est_quadrant_t *)pforest->ghost->mirrors.array;
50640a96aa3bSJed Brown     for (q = 0; q < nMirror; q++) {
5065f4f49eeaSPierre Jolivet       p4est_quadrant_t *mir = &mirror_array[q];
50660a96aa3bSJed Brown 
50670a96aa3bSJed Brown       mirror[q].rank  = rank;
50680a96aa3bSJed Brown       mirror[q].index = (PetscInt)mir->p.piggy3.local_num + cLocalStart;
5069f4f49eeaSPierre Jolivet       mirrorPtrs[q]   = (void *)&mirror[q];
50700a96aa3bSJed Brown     }
5071792fecdfSBarry Smith     PetscCallP4est(p4est_ghost_exchange_custom, (pforest->forest, pforest->ghost, sizeof(PetscSFNode), mirrorPtrs, remote));
50729566063dSJacob Faibussowitsch     PetscCall(PetscFree2(mirror, mirrorPtrs));
50730a96aa3bSJed Brown     for (q = 0; q < nGhostPre; q++) mine[q] = q;
50740a96aa3bSJed Brown     for (; q < nLeaves; q++) mine[q] = (q - nGhostPre) + cLocalEnd;
50750a96aa3bSJed Brown   }
50769566063dSJacob Faibussowitsch   PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)dm), &sf));
50779566063dSJacob Faibussowitsch   PetscCall(PetscSFSetGraph(sf, nRoots, nLeaves, mine, PETSC_OWN_POINTER, remote, PETSC_OWN_POINTER));
50780a96aa3bSJed Brown   *cellSF = sf;
50793ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
50800a96aa3bSJed Brown }
50810a96aa3bSJed Brown 
DMCreateNeumannOverlap_pforest(DM dm,IS * ovl,Mat * J,PetscErrorCode (** setup)(Mat,PetscReal,Vec,Vec,PetscReal,IS,void *),void ** setup_ctx)5082d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMCreateNeumannOverlap_pforest(DM dm, IS *ovl, Mat *J, PetscErrorCode (**setup)(Mat, PetscReal, Vec, Vec, PetscReal, IS, void *), void **setup_ctx)
5083d71ae5a4SJacob Faibussowitsch {
50840a96aa3bSJed Brown   DM plex;
50850a96aa3bSJed Brown 
50860a96aa3bSJed Brown   PetscFunctionBegin;
50879566063dSJacob Faibussowitsch   PetscCall(DMPforestGetPlex(dm, &plex));
5088e4d5475eSStefano Zampini   PetscCall(DMCopyAuxiliaryVec(dm, plex));
50899566063dSJacob Faibussowitsch   PetscCall(DMCreateNeumannOverlap_Plex(plex, ovl, J, setup, setup_ctx));
5090e4d5475eSStefano Zampini   PetscCall(DMClearAuxiliaryVec(plex));
50910a96aa3bSJed Brown   if (!*setup) {
50929566063dSJacob Faibussowitsch     PetscCall(PetscObjectQueryFunction((PetscObject)dm, "MatComputeNeumannOverlap_C", setup));
509348a46eb9SPierre Jolivet     if (*setup) PetscCall(PetscObjectCompose((PetscObject)*ovl, "_DM_Original_HPDDM", (PetscObject)dm));
50940a96aa3bSJed Brown   }
50953ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
50960a96aa3bSJed Brown }
50970a96aa3bSJed Brown 
5098907a3e9cSStefano Zampini   #define DMCreateDomainDecomposition_pforest _append_pforest(DMCreateDomainDecomposition)
DMCreateDomainDecomposition_pforest(DM dm,PetscInt * nsub,char *** names,IS ** innerises,IS ** outerises,DM ** dms)5099907a3e9cSStefano Zampini static PetscErrorCode DMCreateDomainDecomposition_pforest(DM dm, PetscInt *nsub, char ***names, IS **innerises, IS **outerises, DM **dms)
5100907a3e9cSStefano Zampini {
5101907a3e9cSStefano Zampini   DM plex;
5102907a3e9cSStefano Zampini 
5103907a3e9cSStefano Zampini   PetscFunctionBegin;
5104907a3e9cSStefano Zampini   PetscCall(DMPforestGetPlex(dm, &plex));
5105e4d5475eSStefano Zampini   PetscCall(DMCopyAuxiliaryVec(dm, plex));
5106907a3e9cSStefano Zampini   PetscCall(DMCreateDomainDecomposition(plex, nsub, names, innerises, outerises, dms));
5107e4d5475eSStefano Zampini   PetscCall(DMClearAuxiliaryVec(plex));
5108907a3e9cSStefano Zampini   PetscFunctionReturn(PETSC_SUCCESS);
5109907a3e9cSStefano Zampini }
5110907a3e9cSStefano Zampini 
5111907a3e9cSStefano Zampini   #define DMCreateDomainDecompositionScatters_pforest _append_pforest(DMCreateDomainDecompositionScatters)
DMCreateDomainDecompositionScatters_pforest(DM dm,PetscInt n,DM * subdms,VecScatter ** iscat,VecScatter ** oscat,VecScatter ** lscat)5112907a3e9cSStefano Zampini static PetscErrorCode DMCreateDomainDecompositionScatters_pforest(DM dm, PetscInt n, DM *subdms, VecScatter **iscat, VecScatter **oscat, VecScatter **lscat)
5113907a3e9cSStefano Zampini {
5114907a3e9cSStefano Zampini   DM plex;
5115907a3e9cSStefano Zampini 
5116907a3e9cSStefano Zampini   PetscFunctionBegin;
5117907a3e9cSStefano Zampini   PetscCall(DMPforestGetPlex(dm, &plex));
5118e4d5475eSStefano Zampini   PetscCall(DMCopyAuxiliaryVec(dm, plex));
5119907a3e9cSStefano Zampini   PetscCall(DMCreateDomainDecompositionScatters(plex, n, subdms, iscat, oscat, lscat));
5120907a3e9cSStefano Zampini   PetscFunctionReturn(PETSC_SUCCESS);
5121907a3e9cSStefano Zampini }
5122907a3e9cSStefano Zampini 
DMInitialize_pforest(DM dm)5123d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMInitialize_pforest(DM dm)
5124d71ae5a4SJacob Faibussowitsch {
51250a96aa3bSJed Brown   PetscFunctionBegin;
51260a96aa3bSJed Brown   dm->ops->setup                     = DMSetUp_pforest;
51270a96aa3bSJed Brown   dm->ops->view                      = DMView_pforest;
51280a96aa3bSJed Brown   dm->ops->clone                     = DMClone_pforest;
51290a96aa3bSJed Brown   dm->ops->createinterpolation       = DMCreateInterpolation_pforest;
51300a96aa3bSJed Brown   dm->ops->createinjection           = DMCreateInjection_pforest;
51310a96aa3bSJed Brown   dm->ops->setfromoptions            = DMSetFromOptions_pforest;
51320a96aa3bSJed Brown   dm->ops->createcoordinatedm        = DMCreateCoordinateDM_pforest;
513399acd26cSksagiyam   dm->ops->createcellcoordinatedm    = NULL;
51340a96aa3bSJed Brown   dm->ops->createglobalvector        = DMCreateGlobalVector_pforest;
51350a96aa3bSJed Brown   dm->ops->createlocalvector         = DMCreateLocalVector_pforest;
51360a96aa3bSJed Brown   dm->ops->creatematrix              = DMCreateMatrix_pforest;
51370a96aa3bSJed Brown   dm->ops->projectfunctionlocal      = DMProjectFunctionLocal_pforest;
51380a96aa3bSJed Brown   dm->ops->projectfunctionlabellocal = DMProjectFunctionLabelLocal_pforest;
51390a96aa3bSJed Brown   dm->ops->projectfieldlocal         = DMProjectFieldLocal_pforest;
51400a96aa3bSJed Brown   dm->ops->createlocalsection        = DMCreatelocalsection_pforest;
51410a96aa3bSJed Brown   dm->ops->createdefaultconstraints  = DMCreateDefaultConstraints_pforest;
51420a96aa3bSJed Brown   dm->ops->computel2diff             = DMComputeL2Diff_pforest;
51430a96aa3bSJed Brown   dm->ops->computel2fielddiff        = DMComputeL2FieldDiff_pforest;
51440a96aa3bSJed Brown   dm->ops->getdimpoints              = DMGetDimPoints_pforest;
5145907a3e9cSStefano Zampini   dm->ops->createdomaindecomposition = DMCreateDomainDecomposition_pforest;
5146907a3e9cSStefano Zampini   dm->ops->createddscatters          = DMCreateDomainDecompositionScatters_pforest;
51470a96aa3bSJed Brown 
51489566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)dm, PetscStringize(DMConvert_plex_pforest) "_C", DMConvert_plex_pforest));
51499566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)dm, PetscStringize(DMConvert_pforest_plex) "_C", DMConvert_pforest_plex));
51509566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)dm, "DMCreateNeumannOverlap_C", DMCreateNeumannOverlap_pforest));
51519566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)dm, "DMPlexGetOverlap_C", DMForestGetPartitionOverlap));
51523ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
51530a96aa3bSJed Brown }
51540a96aa3bSJed Brown 
51550a96aa3bSJed Brown   #define DMCreate_pforest _append_pforest(DMCreate)
DMCreate_pforest(DM dm)5156d71ae5a4SJacob Faibussowitsch PETSC_EXTERN PetscErrorCode DMCreate_pforest(DM dm)
5157d71ae5a4SJacob Faibussowitsch {
51580a96aa3bSJed Brown   DM_Forest         *forest;
51590a96aa3bSJed Brown   DM_Forest_pforest *pforest;
51600a96aa3bSJed Brown 
51610a96aa3bSJed Brown   PetscFunctionBegin;
51629566063dSJacob Faibussowitsch   PetscCall(PetscP4estInitialize());
51639566063dSJacob Faibussowitsch   PetscCall(DMCreate_Forest(dm));
51649566063dSJacob Faibussowitsch   PetscCall(DMInitialize_pforest(dm));
51659566063dSJacob Faibussowitsch   PetscCall(DMSetDimension(dm, P4EST_DIM));
51660a96aa3bSJed Brown 
51670a96aa3bSJed Brown   /* set forest defaults */
51689566063dSJacob Faibussowitsch   PetscCall(DMForestSetTopology(dm, "unit"));
51699566063dSJacob Faibussowitsch   PetscCall(DMForestSetMinimumRefinement(dm, 0));
51709566063dSJacob Faibussowitsch   PetscCall(DMForestSetInitialRefinement(dm, 0));
51719566063dSJacob Faibussowitsch   PetscCall(DMForestSetMaximumRefinement(dm, P4EST_QMAXLEVEL));
51729566063dSJacob Faibussowitsch   PetscCall(DMForestSetGradeFactor(dm, 2));
51739566063dSJacob Faibussowitsch   PetscCall(DMForestSetAdjacencyDimension(dm, 0));
51749566063dSJacob Faibussowitsch   PetscCall(DMForestSetPartitionOverlap(dm, 0));
51750a96aa3bSJed Brown 
51760a96aa3bSJed Brown   /* create p4est data */
51774dfa11a4SJacob Faibussowitsch   PetscCall(PetscNew(&pforest));
51780a96aa3bSJed Brown 
51790a96aa3bSJed Brown   forest                            = (DM_Forest *)dm->data;
51800a96aa3bSJed Brown   forest->data                      = pforest;
51810a96aa3bSJed Brown   forest->destroy                   = DMForestDestroy_pforest;
51820a96aa3bSJed Brown   forest->ftemplate                 = DMForestTemplate_pforest;
51830a96aa3bSJed Brown   forest->transfervec               = DMForestTransferVec_pforest;
51840a96aa3bSJed Brown   forest->transfervecfrombase       = DMForestTransferVecFromBase_pforest;
51850a96aa3bSJed Brown   forest->createcellchart           = DMForestCreateCellChart_pforest;
51860a96aa3bSJed Brown   forest->createcellsf              = DMForestCreateCellSF_pforest;
51870a96aa3bSJed Brown   forest->clearadaptivityforest     = DMForestClearAdaptivityForest_pforest;
51880a96aa3bSJed Brown   forest->getadaptivitysuccess      = DMForestGetAdaptivitySuccess_pforest;
51890a96aa3bSJed Brown   pforest->topo                     = NULL;
51900a96aa3bSJed Brown   pforest->forest                   = NULL;
51910a96aa3bSJed Brown   pforest->ghost                    = NULL;
51920a96aa3bSJed Brown   pforest->lnodes                   = NULL;
51930a96aa3bSJed Brown   pforest->partition_for_coarsening = PETSC_TRUE;
51940a96aa3bSJed Brown   pforest->coarsen_hierarchy        = PETSC_FALSE;
51950a96aa3bSJed Brown   pforest->cLocalStart              = -1;
51960a96aa3bSJed Brown   pforest->cLocalEnd                = -1;
51970a96aa3bSJed Brown   pforest->labelsFinalized          = PETSC_FALSE;
51980a96aa3bSJed Brown   pforest->ghostName                = NULL;
51993ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
52000a96aa3bSJed Brown }
52010a96aa3bSJed Brown 
52020a96aa3bSJed Brown #endif /* defined(PETSC_HAVE_P4EST) */
5203