15f2c45f1SShri Abhyankar #define PETSCDM_DLL 2af0996ceSBarry Smith #include <petsc/private/dmnetworkimpl.h> /*I "petscdmnetwork.h" I*/ 35f2c45f1SShri Abhyankar #include <petscdmda.h> 45f2c45f1SShri Abhyankar 54416b707SBarry Smith PetscErrorCode DMSetFromOptions_Network(PetscOptionItems *PetscOptionsObject,DM dm) 65f2c45f1SShri Abhyankar { 75f2c45f1SShri Abhyankar PetscErrorCode ierr; 85f2c45f1SShri Abhyankar 95f2c45f1SShri Abhyankar PetscFunctionBegin; 105f2c45f1SShri Abhyankar PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 111a1499c8SBarry Smith ierr = PetscOptionsHead(PetscOptionsObject,"DMNetwork Options");CHKERRQ(ierr); 125f2c45f1SShri Abhyankar ierr = PetscOptionsTail();CHKERRQ(ierr); 135f2c45f1SShri Abhyankar PetscFunctionReturn(0); 145f2c45f1SShri Abhyankar } 155f2c45f1SShri Abhyankar 165f2c45f1SShri Abhyankar /* External function declarations here */ 175f2c45f1SShri Abhyankar extern PetscErrorCode DMCreateMatrix_Network(DM, Mat*); 185f2c45f1SShri Abhyankar extern PetscErrorCode DMDestroy_Network(DM); 195f2c45f1SShri Abhyankar extern PetscErrorCode DMView_Network(DM, PetscViewer); 205f2c45f1SShri Abhyankar extern PetscErrorCode DMGlobalToLocalBegin_Network(DM, Vec, InsertMode, Vec); 215f2c45f1SShri Abhyankar extern PetscErrorCode DMGlobalToLocalEnd_Network(DM, Vec, InsertMode, Vec); 225f2c45f1SShri Abhyankar extern PetscErrorCode DMLocalToGlobalBegin_Network(DM, Vec, InsertMode, Vec); 235f2c45f1SShri Abhyankar extern PetscErrorCode DMLocalToGlobalEnd_Network(DM, Vec, InsertMode, Vec); 245f2c45f1SShri Abhyankar extern PetscErrorCode DMSetUp_Network(DM); 258415c774SShri Abhyankar extern PetscErrorCode DMClone_Network(DM, DM*); 265f2c45f1SShri Abhyankar 27*4dc485aaSHong Zhang static PetscErrorCode VecView_Network_Seq(DM networkdm,Vec X,PetscViewer viewer) 28*4dc485aaSHong Zhang { 29*4dc485aaSHong Zhang PetscErrorCode ierr; 30*4dc485aaSHong Zhang PetscInt i,e,v,Start,End,offset,nvar; 31*4dc485aaSHong Zhang const PetscScalar *xv; 32*4dc485aaSHong Zhang 33*4dc485aaSHong Zhang PetscFunctionBegin; 34*4dc485aaSHong Zhang ierr = VecGetArrayRead(X,&xv);CHKERRQ(ierr); 35*4dc485aaSHong Zhang 36*4dc485aaSHong Zhang /* iterate over edges */ 37*4dc485aaSHong Zhang ierr = DMNetworkGetEdgeRange(networkdm,&Start,&End);CHKERRQ(ierr); 38*4dc485aaSHong Zhang for (e=Start; e<End; e++) { 39*4dc485aaSHong Zhang ierr = DMNetworkGetVariableOffset(networkdm,e,&offset);CHKERRQ(ierr); 40*4dc485aaSHong Zhang ierr = DMNetworkGetNumVariables(networkdm,e,&nvar);CHKERRQ(ierr); 41*4dc485aaSHong Zhang if (!nvar) continue; 42*4dc485aaSHong Zhang ierr = PetscViewerASCIIPrintf(viewer,"Edge %D:\n",e-Start);CHKERRQ(ierr); 43*4dc485aaSHong Zhang for (i=offset; i< offset+nvar; i++) { 44*4dc485aaSHong Zhang #if defined(PETSC_USE_COMPLEX) 45*4dc485aaSHong Zhang if (PetscImaginaryPart(xv[i]) > 0.0) { 46*4dc485aaSHong Zhang ierr = PetscViewerASCIIPrintf(viewer," %g + %g i\n",(double)PetscRealPart(xv[i]),(double)PetscImaginaryPart(xv[i]));CHKERRQ(ierr); 47*4dc485aaSHong Zhang } else if (PetscImaginaryPart(xv[i]) < 0.0) { 48*4dc485aaSHong Zhang ierr = PetscViewerASCIIPrintf(viewer," %g - %g i\n",(double)PetscRealPart(xv[i]),-(double)PetscImaginaryPart(xv[i]));CHKERRQ(ierr); 49*4dc485aaSHong Zhang } else { 50*4dc485aaSHong Zhang ierr = PetscViewerASCIIPrintf(viewer," %g\n",(double)PetscRealPart(xv[i]));CHKERRQ(ierr); 51*4dc485aaSHong Zhang } 52*4dc485aaSHong Zhang #else 53*4dc485aaSHong Zhang ierr = PetscViewerASCIIPrintf(viewer," %g\n",(double)xv[i]);CHKERRQ(ierr); 54*4dc485aaSHong Zhang #endif 55*4dc485aaSHong Zhang } 56*4dc485aaSHong Zhang } 57*4dc485aaSHong Zhang 58*4dc485aaSHong Zhang /* iterate over vertices */ 59*4dc485aaSHong Zhang ierr = DMNetworkGetVertexRange(networkdm,&Start,&End);CHKERRQ(ierr); 60*4dc485aaSHong Zhang for (v=Start; v<End; v++) { 61*4dc485aaSHong Zhang ierr = DMNetworkGetVariableOffset(networkdm,v,&offset);CHKERRQ(ierr); 62*4dc485aaSHong Zhang ierr = DMNetworkGetNumVariables(networkdm,v,&nvar);CHKERRQ(ierr); 63*4dc485aaSHong Zhang if (!nvar) continue; 64*4dc485aaSHong Zhang ierr = PetscViewerASCIIPrintf(viewer,"Vertex %D:\n",v-Start);CHKERRQ(ierr); 65*4dc485aaSHong Zhang for (i=offset; i< offset+nvar; i++) { 66*4dc485aaSHong Zhang #if defined(PETSC_USE_COMPLEX) 67*4dc485aaSHong Zhang if (PetscImaginaryPart(xv[i]) > 0.0) { 68*4dc485aaSHong Zhang ierr = PetscViewerASCIIPrintf(viewer," %g + %g i\n",(double)PetscRealPart(xv[i]),(double)PetscImaginaryPart(xv[i]));CHKERRQ(ierr); 69*4dc485aaSHong Zhang } else if (PetscImaginaryPart(xv[i]) < 0.0) { 70*4dc485aaSHong Zhang ierr = PetscViewerASCIIPrintf(viewer," %g - %g i\n",(double)PetscRealPart(xv[i]),-(double)PetscImaginaryPart(xv[i]));CHKERRQ(ierr); 71*4dc485aaSHong Zhang } else { 72*4dc485aaSHong Zhang ierr = PetscViewerASCIIPrintf(viewer," %g\n",(double)PetscRealPart(xv[i]));CHKERRQ(ierr); 73*4dc485aaSHong Zhang } 74*4dc485aaSHong Zhang #else 75*4dc485aaSHong Zhang ierr = PetscViewerASCIIPrintf(viewer," %g\n",(double)xv[i]);CHKERRQ(ierr); 76*4dc485aaSHong Zhang #endif 77*4dc485aaSHong Zhang } 78*4dc485aaSHong Zhang } 79*4dc485aaSHong Zhang ierr = PetscViewerFlush(viewer);CHKERRQ(ierr); 80*4dc485aaSHong Zhang ierr = VecRestoreArrayRead(X,&xv);CHKERRQ(ierr); 81*4dc485aaSHong Zhang PetscFunctionReturn(0); 82*4dc485aaSHong Zhang } 83*4dc485aaSHong Zhang 84*4dc485aaSHong Zhang PetscErrorCode VecView_Network(Vec v,PetscViewer viewer) 85*4dc485aaSHong Zhang { 86*4dc485aaSHong Zhang DM dm; 87*4dc485aaSHong Zhang PetscErrorCode ierr; 88*4dc485aaSHong Zhang PetscBool isseq; 89*4dc485aaSHong Zhang 90*4dc485aaSHong Zhang PetscFunctionBegin; 91*4dc485aaSHong Zhang printf("VecView_Network...\n"); 92*4dc485aaSHong Zhang ierr = VecGetDM(v,&dm);CHKERRQ(ierr); 93*4dc485aaSHong Zhang if (!dm) SETERRQ(PetscObjectComm((PetscObject)v),PETSC_ERR_ARG_WRONG,"Vector not generated from a DM"); 94*4dc485aaSHong Zhang ierr = PetscObjectTypeCompare((PetscObject)v,VECSEQ,&isseq);CHKERRQ(ierr); 95*4dc485aaSHong Zhang if (isseq) { 96*4dc485aaSHong Zhang ierr = VecView_Network_Seq(dm,v,viewer);CHKERRQ(ierr); 97*4dc485aaSHong Zhang } else { 98*4dc485aaSHong Zhang printf("not done yet\n"); 99*4dc485aaSHong Zhang } 100*4dc485aaSHong Zhang PetscFunctionReturn(0); 101*4dc485aaSHong Zhang } 1025f2c45f1SShri Abhyankar 1035f2c45f1SShri Abhyankar static PetscErrorCode DMCreateGlobalVector_Network(DM dm,Vec *vec) 1045f2c45f1SShri Abhyankar { 1055f2c45f1SShri Abhyankar PetscErrorCode ierr; 1065f2c45f1SShri Abhyankar DM_Network *network = (DM_Network*) dm->data; 1075f2c45f1SShri Abhyankar 1085f2c45f1SShri Abhyankar PetscFunctionBegin; 1095f2c45f1SShri Abhyankar ierr = DMCreateGlobalVector(network->plex,vec);CHKERRQ(ierr); 110*4dc485aaSHong Zhang ierr = VecSetOperation(*vec, VECOP_VIEW, (void (*)(void)) VecView_Network);CHKERRQ(ierr); 1115f2c45f1SShri Abhyankar ierr = VecSetDM(*vec,dm);CHKERRQ(ierr); 1125f2c45f1SShri Abhyankar PetscFunctionReturn(0); 1135f2c45f1SShri Abhyankar } 1145f2c45f1SShri Abhyankar 1155f2c45f1SShri Abhyankar static PetscErrorCode DMCreateLocalVector_Network(DM dm,Vec *vec) 1165f2c45f1SShri Abhyankar { 1175f2c45f1SShri Abhyankar PetscErrorCode ierr; 1185f2c45f1SShri Abhyankar DM_Network *network = (DM_Network*) dm->data; 1195f2c45f1SShri Abhyankar 1205f2c45f1SShri Abhyankar PetscFunctionBegin; 1215f2c45f1SShri Abhyankar ierr = DMCreateLocalVector(network->plex,vec);CHKERRQ(ierr); 1225f2c45f1SShri Abhyankar ierr = VecSetDM(*vec,dm);CHKERRQ(ierr); 1235f2c45f1SShri Abhyankar PetscFunctionReturn(0); 1245f2c45f1SShri Abhyankar } 1255f2c45f1SShri Abhyankar 1265f2c45f1SShri Abhyankar PetscErrorCode DMInitialize_Network(DM dm) 1275f2c45f1SShri Abhyankar { 1285f2c45f1SShri Abhyankar 1295f2c45f1SShri Abhyankar PetscFunctionBegin; 1305f2c45f1SShri Abhyankar 1315f2c45f1SShri Abhyankar dm->ops->view = NULL; 1325f2c45f1SShri Abhyankar dm->ops->setfromoptions = DMSetFromOptions_Network; 1338415c774SShri Abhyankar dm->ops->clone = DMClone_Network; 1345f2c45f1SShri Abhyankar dm->ops->setup = DMSetUp_Network; 1355f2c45f1SShri Abhyankar dm->ops->createglobalvector = DMCreateGlobalVector_Network; 1365f2c45f1SShri Abhyankar dm->ops->createlocalvector = DMCreateLocalVector_Network; 1375f2c45f1SShri Abhyankar dm->ops->getlocaltoglobalmapping = NULL; 1385f2c45f1SShri Abhyankar dm->ops->createfieldis = NULL; 1395f2c45f1SShri Abhyankar dm->ops->createcoordinatedm = NULL; 1405f2c45f1SShri Abhyankar dm->ops->getcoloring = 0; 1415f2c45f1SShri Abhyankar dm->ops->creatematrix = DMCreateMatrix_Network; 1425f2c45f1SShri Abhyankar dm->ops->createinterpolation = 0; 1435f2c45f1SShri Abhyankar dm->ops->getaggregates = 0; 1445f2c45f1SShri Abhyankar dm->ops->getinjection = 0; 1455f2c45f1SShri Abhyankar dm->ops->refine = 0; 1465f2c45f1SShri Abhyankar dm->ops->coarsen = 0; 1475f2c45f1SShri Abhyankar dm->ops->refinehierarchy = 0; 1485f2c45f1SShri Abhyankar dm->ops->coarsenhierarchy = 0; 1495f2c45f1SShri Abhyankar dm->ops->globaltolocalbegin = DMGlobalToLocalBegin_Network; 1505f2c45f1SShri Abhyankar dm->ops->globaltolocalend = DMGlobalToLocalEnd_Network; 1515f2c45f1SShri Abhyankar dm->ops->localtoglobalbegin = DMLocalToGlobalBegin_Network; 1525f2c45f1SShri Abhyankar dm->ops->localtoglobalend = DMLocalToGlobalEnd_Network; 1535f2c45f1SShri Abhyankar dm->ops->destroy = DMDestroy_Network; 1545f2c45f1SShri Abhyankar dm->ops->createsubdm = NULL; 1555f2c45f1SShri Abhyankar dm->ops->locatepoints = NULL; 1565f2c45f1SShri Abhyankar PetscFunctionReturn(0); 1575f2c45f1SShri Abhyankar } 1585f2c45f1SShri Abhyankar 1598415c774SShri Abhyankar PetscErrorCode DMClone_Network(DM dm, DM *newdm) 1608415c774SShri Abhyankar { 1618415c774SShri Abhyankar DM_Network *network = (DM_Network *) dm->data; 1628415c774SShri Abhyankar PetscErrorCode ierr; 1638415c774SShri Abhyankar 1648415c774SShri Abhyankar PetscFunctionBegin; 1658415c774SShri Abhyankar network->refct++; 1668415c774SShri Abhyankar (*newdm)->data = network; 1678415c774SShri Abhyankar ierr = PetscObjectChangeTypeName((PetscObject) *newdm, DMNETWORK);CHKERRQ(ierr); 1688415c774SShri Abhyankar ierr = DMInitialize_Network(*newdm);CHKERRQ(ierr); 1698415c774SShri Abhyankar PetscFunctionReturn(0); 1708415c774SShri Abhyankar } 1718415c774SShri Abhyankar 1725f2c45f1SShri Abhyankar /*MC 1735f2c45f1SShri Abhyankar DMNETWORK = "network" - A DM object that encapsulates an unstructured network. The implementation is based on the DM object 1745f2c45f1SShri Abhyankar DMPlex that manages unstructured grids. Distributed networks use a non-overlapping partitioning of 1755f2c45f1SShri Abhyankar the edges. In the local representation, Vecs contain all unknowns in the interior and shared boundary. 1765f2c45f1SShri Abhyankar This is specified by a PetscSection object. Ownership in the global representation is determined by 1775f2c45f1SShri Abhyankar ownership of the underlying DMPlex points. This is specified by another PetscSection object. 1785f2c45f1SShri Abhyankar 1795f2c45f1SShri Abhyankar Level: intermediate 1805f2c45f1SShri Abhyankar 1815f2c45f1SShri Abhyankar .seealso: DMType, DMNetworkCreate(), DMCreate(), DMSetType() 1825f2c45f1SShri Abhyankar M*/ 1835f2c45f1SShri Abhyankar 1845f2c45f1SShri Abhyankar PETSC_EXTERN PetscErrorCode DMCreate_Network(DM dm) 1855f2c45f1SShri Abhyankar { 1865f2c45f1SShri Abhyankar DM_Network *network; 1875f2c45f1SShri Abhyankar PetscErrorCode ierr; 1885f2c45f1SShri Abhyankar 1895f2c45f1SShri Abhyankar PetscFunctionBegin; 1905f2c45f1SShri Abhyankar PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 1915f2c45f1SShri Abhyankar ierr = PetscNewLog(dm,&network);CHKERRQ(ierr); 1925f2c45f1SShri Abhyankar dm->data = network; 1935f2c45f1SShri Abhyankar 1945f2c45f1SShri Abhyankar network->refct = 1; 1955f2c45f1SShri Abhyankar network->NNodes = -1; 1965f2c45f1SShri Abhyankar network->NEdges = -1; 1975f2c45f1SShri Abhyankar network->nNodes = -1; 1985f2c45f1SShri Abhyankar network->nEdges = -1; 1995f2c45f1SShri Abhyankar 20013c2a604SAdrian Maldonado 2015f2c45f1SShri Abhyankar ierr = DMInitialize_Network(dm);CHKERRQ(ierr); 2025f2c45f1SShri Abhyankar PetscFunctionReturn(0); 2035f2c45f1SShri Abhyankar } 2045f2c45f1SShri Abhyankar 2055f2c45f1SShri Abhyankar /*@ 2065f2c45f1SShri Abhyankar DMNetworkCreate - Creates a DMNetwork object, which encapsulates an unstructured network. 2075f2c45f1SShri Abhyankar 2085f2c45f1SShri Abhyankar Collective on MPI_Comm 2095f2c45f1SShri Abhyankar 2105f2c45f1SShri Abhyankar Input Parameter: 2115f2c45f1SShri Abhyankar . comm - The communicator for the DMNetwork object 2125f2c45f1SShri Abhyankar 2135f2c45f1SShri Abhyankar Output Parameter: 2145f2c45f1SShri Abhyankar . network - The DMNetwork object 2155f2c45f1SShri Abhyankar 2165f2c45f1SShri Abhyankar Level: beginner 2175f2c45f1SShri Abhyankar 2185f2c45f1SShri Abhyankar .keywords: DMNetwork, create 2195f2c45f1SShri Abhyankar @*/ 2205f2c45f1SShri Abhyankar PetscErrorCode DMNetworkCreate(MPI_Comm comm, DM *network) 2215f2c45f1SShri Abhyankar { 2225f2c45f1SShri Abhyankar PetscErrorCode ierr; 2235f2c45f1SShri Abhyankar 2245f2c45f1SShri Abhyankar PetscFunctionBegin; 2255f2c45f1SShri Abhyankar PetscValidPointer(network,2); 2265f2c45f1SShri Abhyankar ierr = DMCreate(comm, network);CHKERRQ(ierr); 2275f2c45f1SShri Abhyankar ierr = DMSetType(*network, DMNETWORK);CHKERRQ(ierr); 2285f2c45f1SShri Abhyankar PetscFunctionReturn(0); 2295f2c45f1SShri Abhyankar } 230