xref: /petsc/src/dm/impls/plex/cgns/plexcgns2.c (revision bcd4bb4a4158aa96f212e9537e87b40407faf83e)
1 #include <petsc/private/dmpleximpl.h> /*I   "petscdmplex.h"   I*/
2 #include <petsc/private/viewercgnsimpl.h>
3 
4 #include <pcgnslib.h>
5 #include <cgns_io.h>
6 
7 #if !defined(CGNS_ENUMT)
8   #define CGNS_ENUMT(a) a
9 #endif
10 #if !defined(CGNS_ENUMV)
11   #define CGNS_ENUMV(a) a
12 #endif
13 // Permute plex closure ordering to CGNS
14 static PetscErrorCode DMPlexCGNSGetPermutation_Internal(DMPolytopeType cell_type, PetscInt closure_size, CGNS_ENUMT(ElementType_t) * element_type, const int **perm)
15 {
16   CGNS_ENUMT(ElementType_t) element_type_tmp;
17 
18   // https://cgns.github.io/CGNS_docs_current/sids/conv.html#unstructgrid
19   static const int bar_2[2]   = {0, 1};
20   static const int bar_3[3]   = {1, 2, 0};
21   static const int bar_4[4]   = {2, 3, 0, 1};
22   static const int bar_5[5]   = {3, 4, 0, 1, 2};
23   static const int tri_3[3]   = {0, 1, 2};
24   static const int tri_6[6]   = {3, 4, 5, 0, 1, 2};
25   static const int tri_10[10] = {7, 8, 9, 1, 2, 3, 4, 5, 6, 0};
26   static const int quad_4[4]  = {0, 1, 2, 3};
27   static const int quad_9[9]  = {
28     5, 6, 7, 8, // vertices
29     1, 2, 3, 4, // edges
30     0,          // center
31   };
32   static const int quad_16[] = {
33     12, 13, 14, 15,               // vertices
34     4,  5,  6,  7,  8, 9, 10, 11, // edges
35     0,  1,  3,  2,                // centers
36   };
37   static const int quad_25[] = {
38     21, 22, 23, 24,                                 // vertices
39     9,  10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, // edges
40     0,  1,  2,  5,  8,  7,  6,  3,  4,              // centers
41   };
42   static const int tetra_4[4]   = {0, 2, 1, 3};
43   static const int tetra_10[10] = {6, 8, 7, 9, 2, 1, 0, 3, 5, 4};
44   static const int tetra_20[20] = {
45     16, 18, 17, 19,         // vertices
46     9,  8,  7,  6,  5,  4,  // bottom edges
47     10, 11, 14, 15, 13, 12, // side edges
48     0,  2,  3,  1,          // faces
49   };
50   static const int hexa_8[8]   = {0, 3, 2, 1, 4, 5, 6, 7};
51   static const int hexa_27[27] = {
52     19, 22, 21, 20, 23, 24, 25, 26, // vertices
53     10, 9,  8,  7,                  // bottom edges
54     16, 15, 18, 17,                 // mid edges
55     11, 12, 13, 14,                 // top edges
56     1,  3,  5,  4,  6,  2,          // faces
57     0,                              // center
58   };
59   static const int hexa_64[64] = {
60     // debug with $PETSC_ARCH/tests/dm/impls/plex/tests/ex49 -dm_plex_simplex 0 -dm_plex_dim 3 -dm_plex_box_faces 1,1,1 -dm_coord_petscspace_degree 3
61     56, 59, 58, 57, 60, 61, 62, 63, // vertices
62     39, 38, 37, 36, 35, 34, 33, 32, // bottom edges
63     51, 50, 48, 49, 52, 53, 55, 54, // mid edges; Paraview needs edge 21-22 swapped with 23-24
64     40, 41, 42, 43, 44, 45, 46, 47, // top edges
65     8,  10, 11, 9,                  // z-minus face
66     16, 17, 19, 18,                 // y-minus face
67     24, 25, 27, 26,                 // x-plus face
68     20, 21, 23, 22,                 // y-plus face
69     30, 28, 29, 31,                 // x-minus face
70     12, 13, 15, 14,                 // z-plus face
71     0,  1,  3,  2,  4,  5,  7,  6,  // center
72   };
73 
74   PetscFunctionBegin;
75   element_type_tmp = CGNS_ENUMV(ElementTypeNull);
76   *perm            = NULL;
77   switch (cell_type) {
78   case DM_POLYTOPE_SEGMENT:
79     switch (closure_size) {
80     case 2:
81       element_type_tmp = CGNS_ENUMV(BAR_2);
82       *perm            = bar_2;
83     case 3:
84       element_type_tmp = CGNS_ENUMV(BAR_3);
85       *perm            = bar_3;
86     case 4:
87       element_type_tmp = CGNS_ENUMV(BAR_4);
88       *perm            = bar_4;
89       break;
90     case 5:
91       element_type_tmp = CGNS_ENUMV(BAR_5);
92       *perm            = bar_5;
93       break;
94     default:
95       SETERRQ(PETSC_COMM_SELF, PETSC_ERR_SUP, "Cell type %s with closure size %" PetscInt_FMT, DMPolytopeTypes[cell_type], closure_size);
96     }
97     break;
98   case DM_POLYTOPE_TRIANGLE:
99     switch (closure_size) {
100     case 3:
101       element_type_tmp = CGNS_ENUMV(TRI_3);
102       *perm            = tri_3;
103       break;
104     case 6:
105       element_type_tmp = CGNS_ENUMV(TRI_6);
106       *perm            = tri_6;
107       break;
108     case 10:
109       element_type_tmp = CGNS_ENUMV(TRI_10);
110       *perm            = tri_10;
111       break;
112     default:
113       SETERRQ(PETSC_COMM_SELF, PETSC_ERR_SUP, "Cell type %s with closure size %" PetscInt_FMT, DMPolytopeTypes[cell_type], closure_size);
114     }
115     break;
116   case DM_POLYTOPE_QUADRILATERAL:
117     switch (closure_size) {
118     case 4:
119       element_type_tmp = CGNS_ENUMV(QUAD_4);
120       *perm            = quad_4;
121       break;
122     case 9:
123       element_type_tmp = CGNS_ENUMV(QUAD_9);
124       *perm            = quad_9;
125       break;
126     case 16:
127       element_type_tmp = CGNS_ENUMV(QUAD_16);
128       *perm            = quad_16;
129       break;
130     case 25:
131       element_type_tmp = CGNS_ENUMV(QUAD_25);
132       *perm            = quad_25;
133       break;
134     default:
135       SETERRQ(PETSC_COMM_SELF, PETSC_ERR_SUP, "Cell type %s with closure size %" PetscInt_FMT, DMPolytopeTypes[cell_type], closure_size);
136     }
137     break;
138   case DM_POLYTOPE_TETRAHEDRON:
139     switch (closure_size) {
140     case 4:
141       element_type_tmp = CGNS_ENUMV(TETRA_4);
142       *perm            = tetra_4;
143       break;
144     case 10:
145       element_type_tmp = CGNS_ENUMV(TETRA_10);
146       *perm            = tetra_10;
147       break;
148     case 20:
149       element_type_tmp = CGNS_ENUMV(TETRA_20);
150       *perm            = tetra_20;
151       break;
152     default:
153       SETERRQ(PETSC_COMM_SELF, PETSC_ERR_SUP, "Cell type %s with closure size %" PetscInt_FMT, DMPolytopeTypes[cell_type], closure_size);
154     }
155     break;
156   case DM_POLYTOPE_HEXAHEDRON:
157     switch (closure_size) {
158     case 8:
159       element_type_tmp = CGNS_ENUMV(HEXA_8);
160       *perm            = hexa_8;
161       break;
162     case 27:
163       element_type_tmp = CGNS_ENUMV(HEXA_27);
164       *perm            = hexa_27;
165       break;
166     case 64:
167       element_type_tmp = CGNS_ENUMV(HEXA_64);
168       *perm            = hexa_64;
169       break;
170     default:
171       SETERRQ(PETSC_COMM_SELF, PETSC_ERR_SUP, "Cell type %s with closure size %" PetscInt_FMT, DMPolytopeTypes[cell_type], closure_size);
172     }
173     break;
174   default:
175     SETERRQ(PETSC_COMM_SELF, PETSC_ERR_SUP, "Cell type %s with closure size %" PetscInt_FMT, DMPolytopeTypes[cell_type], closure_size);
176   }
177   if (element_type) *element_type = element_type_tmp;
178   PetscFunctionReturn(PETSC_SUCCESS);
179 }
180 
181 /*
182   Input Parameters:
183 + cellType  - The CGNS-defined element type
184 
185   Output Parameters:
186 + dmcelltype  - The equivalent DMPolytopeType for the cellType
187 . numCorners - Number of corners of the polytope
188 - dim - The topological dimension of the polytope
189 
190 CGNS elements defined in: https://cgns.github.io/CGNS_docs_current/sids/conv.html#unstructgrid
191 */
192 static inline PetscErrorCode CGNSElementTypeGetTopologyInfo(CGNS_ENUMT(ElementType_t) cellType, DMPolytopeType *dmcelltype, PetscInt *numCorners, PetscInt *dim)
193 {
194   DMPolytopeType _dmcelltype;
195 
196   PetscFunctionBeginUser;
197   switch (cellType) {
198   case CGNS_ENUMV(BAR_2):
199   case CGNS_ENUMV(BAR_3):
200   case CGNS_ENUMV(BAR_4):
201   case CGNS_ENUMV(BAR_5):
202     _dmcelltype = DM_POLYTOPE_SEGMENT;
203     break;
204   case CGNS_ENUMV(TRI_3):
205   case CGNS_ENUMV(TRI_6):
206   case CGNS_ENUMV(TRI_9):
207   case CGNS_ENUMV(TRI_10):
208   case CGNS_ENUMV(TRI_12):
209   case CGNS_ENUMV(TRI_15):
210     _dmcelltype = DM_POLYTOPE_TRIANGLE;
211     break;
212   case CGNS_ENUMV(QUAD_4):
213   case CGNS_ENUMV(QUAD_8):
214   case CGNS_ENUMV(QUAD_9):
215   case CGNS_ENUMV(QUAD_12):
216   case CGNS_ENUMV(QUAD_16):
217   case CGNS_ENUMV(QUAD_P4_16):
218   case CGNS_ENUMV(QUAD_25):
219     _dmcelltype = DM_POLYTOPE_QUADRILATERAL;
220     break;
221   case CGNS_ENUMV(TETRA_4):
222   case CGNS_ENUMV(TETRA_10):
223   case CGNS_ENUMV(TETRA_16):
224   case CGNS_ENUMV(TETRA_20):
225   case CGNS_ENUMV(TETRA_22):
226   case CGNS_ENUMV(TETRA_34):
227   case CGNS_ENUMV(TETRA_35):
228     _dmcelltype = DM_POLYTOPE_TETRAHEDRON;
229     break;
230   case CGNS_ENUMV(PYRA_5):
231   case CGNS_ENUMV(PYRA_13):
232   case CGNS_ENUMV(PYRA_14):
233   case CGNS_ENUMV(PYRA_21):
234   case CGNS_ENUMV(PYRA_29):
235   case CGNS_ENUMV(PYRA_P4_29):
236   case CGNS_ENUMV(PYRA_30):
237   case CGNS_ENUMV(PYRA_50):
238   case CGNS_ENUMV(PYRA_55):
239     _dmcelltype = DM_POLYTOPE_PYRAMID;
240     break;
241   case CGNS_ENUMV(PENTA_6):
242   case CGNS_ENUMV(PENTA_15):
243   case CGNS_ENUMV(PENTA_18):
244   case CGNS_ENUMV(PENTA_24):
245   case CGNS_ENUMV(PENTA_33):
246   case CGNS_ENUMV(PENTA_38):
247   case CGNS_ENUMV(PENTA_40):
248   case CGNS_ENUMV(PENTA_66):
249   case CGNS_ENUMV(PENTA_75):
250     _dmcelltype = DM_POLYTOPE_TRI_PRISM;
251     break;
252   case CGNS_ENUMV(HEXA_8):
253   case CGNS_ENUMV(HEXA_20):
254   case CGNS_ENUMV(HEXA_27):
255   case CGNS_ENUMV(HEXA_32):
256   case CGNS_ENUMV(HEXA_44):
257   case CGNS_ENUMV(HEXA_56):
258   case CGNS_ENUMV(HEXA_64):
259   case CGNS_ENUMV(HEXA_98):
260   case CGNS_ENUMV(HEXA_125):
261     _dmcelltype = DM_POLYTOPE_HEXAHEDRON;
262     break;
263   case CGNS_ENUMV(MIXED):
264     SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Invalid CGNS ElementType_t: MIXED");
265   default:
266     SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Invalid CGNS ElementType_t: %d", (int)cellType);
267   }
268 
269   if (dmcelltype) *dmcelltype = _dmcelltype;
270   if (numCorners) *numCorners = DMPolytopeTypeGetNumVertices(_dmcelltype);
271   if (dim) *dim = DMPolytopeTypeGetDim(_dmcelltype);
272   PetscFunctionReturn(PETSC_SUCCESS);
273 }
274 
275 /*
276   Input Parameters:
277 + cellType  - The CGNS-defined cell type
278 
279   Output Parameters:
280 + numClosure - Number of nodes that define the function space on the cell
281 - pOrder - The polynomial order of the cell
282 
283 CGNS elements defined in: https://cgns.github.io/CGNS_docs_current/sids/conv.html#unstructgrid
284 
285 Note: we only support "full" elements, ie. not seredipity elements
286 */
287 static inline PetscErrorCode CGNSElementTypeGetDiscretizationInfo(CGNS_ENUMT(ElementType_t) cellType, PetscInt *numClosure, PetscInt *pOrder)
288 {
289   PetscInt _numClosure, _pOrder;
290 
291   PetscFunctionBeginUser;
292   switch (cellType) {
293   case CGNS_ENUMV(BAR_2):
294     _numClosure = 2;
295     _pOrder     = 1;
296     break;
297   case CGNS_ENUMV(BAR_3):
298     _numClosure = 3;
299     _pOrder     = 2;
300     break;
301   case CGNS_ENUMV(BAR_4):
302     _numClosure = 4;
303     _pOrder     = 3;
304     break;
305   case CGNS_ENUMV(BAR_5):
306     _numClosure = 5;
307     _pOrder     = 4;
308     break;
309   case CGNS_ENUMV(TRI_3):
310     _numClosure = 3;
311     _pOrder     = 1;
312     break;
313   case CGNS_ENUMV(TRI_6):
314     _numClosure = 6;
315     _pOrder     = 2;
316     break;
317   case CGNS_ENUMV(TRI_10):
318     _numClosure = 10;
319     _pOrder     = 3;
320     break;
321   case CGNS_ENUMV(TRI_15):
322     _numClosure = 15;
323     _pOrder     = 4;
324     break;
325   case CGNS_ENUMV(QUAD_4):
326     _numClosure = 4;
327     _pOrder     = 1;
328     break;
329   case CGNS_ENUMV(QUAD_9):
330     _numClosure = 9;
331     _pOrder     = 2;
332     break;
333   case CGNS_ENUMV(QUAD_16):
334     _numClosure = 16;
335     _pOrder     = 3;
336     break;
337   case CGNS_ENUMV(QUAD_25):
338     _numClosure = 25;
339     _pOrder     = 4;
340     break;
341   case CGNS_ENUMV(TETRA_4):
342     _numClosure = 4;
343     _pOrder     = 1;
344     break;
345   case CGNS_ENUMV(TETRA_10):
346     _numClosure = 10;
347     _pOrder     = 2;
348     break;
349   case CGNS_ENUMV(TETRA_20):
350     _numClosure = 20;
351     _pOrder     = 3;
352     break;
353   case CGNS_ENUMV(TETRA_35):
354     _numClosure = 35;
355     _pOrder     = 4;
356     break;
357   case CGNS_ENUMV(PYRA_5):
358     _numClosure = 5;
359     _pOrder     = 1;
360     break;
361   case CGNS_ENUMV(PYRA_14):
362     _numClosure = 14;
363     _pOrder     = 2;
364     break;
365   case CGNS_ENUMV(PYRA_30):
366     _numClosure = 30;
367     _pOrder     = 3;
368     break;
369   case CGNS_ENUMV(PYRA_55):
370     _numClosure = 55;
371     _pOrder     = 4;
372     break;
373   case CGNS_ENUMV(PENTA_6):
374     _numClosure = 6;
375     _pOrder     = 1;
376     break;
377   case CGNS_ENUMV(PENTA_18):
378     _numClosure = 18;
379     _pOrder     = 2;
380     break;
381   case CGNS_ENUMV(PENTA_40):
382     _numClosure = 40;
383     _pOrder     = 3;
384     break;
385   case CGNS_ENUMV(PENTA_75):
386     _numClosure = 75;
387     _pOrder     = 4;
388     break;
389   case CGNS_ENUMV(HEXA_8):
390     _numClosure = 8;
391     _pOrder     = 1;
392     break;
393   case CGNS_ENUMV(HEXA_27):
394     _numClosure = 27;
395     _pOrder     = 2;
396     break;
397   case CGNS_ENUMV(HEXA_64):
398     _numClosure = 64;
399     _pOrder     = 3;
400     break;
401   case CGNS_ENUMV(HEXA_125):
402     _numClosure = 125;
403     _pOrder     = 4;
404     break;
405   case CGNS_ENUMV(MIXED):
406     SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Invalid CGNS ElementType_t: MIXED");
407   default:
408     SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Unsupported or Invalid cell type %d", (int)cellType);
409   }
410   if (numClosure) *numClosure = _numClosure;
411   if (pOrder) *pOrder = _pOrder;
412   PetscFunctionReturn(PETSC_SUCCESS);
413 }
414 
415 static PetscErrorCode PetscCGNSDataType(PetscDataType pd, CGNS_ENUMT(DataType_t) * cd)
416 {
417   PetscFunctionBegin;
418   switch (pd) {
419   case PETSC_FLOAT:
420     *cd = CGNS_ENUMV(RealSingle);
421     break;
422   case PETSC_DOUBLE:
423     *cd = CGNS_ENUMV(RealDouble);
424     break;
425   case PETSC_COMPLEX:
426     *cd = CGNS_ENUMV(ComplexDouble);
427     break;
428   default:
429     SETERRQ(PETSC_COMM_SELF, PETSC_ERR_SUP, "Data type %s", PetscDataTypes[pd]);
430   }
431   PetscFunctionReturn(PETSC_SUCCESS);
432 }
433 
434 PetscErrorCode DMPlexCreateCGNSFromFile_Internal(MPI_Comm comm, const char filename[], PetscBool interpolate, DM *dm)
435 {
436   int       cgid                = -1;
437   PetscBool use_parallel_viewer = PETSC_FALSE;
438 
439   PetscFunctionBegin;
440   PetscAssertPointer(filename, 2);
441   PetscCall(PetscViewerCGNSRegisterLogEvents_Internal());
442   PetscCall(PetscOptionsGetBool(NULL, NULL, "-dm_plex_cgns_parallel", &use_parallel_viewer, NULL));
443 
444   if (use_parallel_viewer) {
445     PetscCallCGNS(cgp_mpi_comm(comm));
446     PetscCallCGNSOpen(cgp_open(filename, CG_MODE_READ, &cgid), 0, 0);
447     PetscCheck(cgid > 0, PETSC_COMM_SELF, PETSC_ERR_LIB, "cgp_open(\"%s\",...) did not return a valid file ID", filename);
448     PetscCall(DMPlexCreateCGNS(comm, cgid, interpolate, dm));
449     PetscCallCGNSClose(cgp_close(cgid), 0, 0);
450   } else {
451     PetscCallCGNSOpen(cg_open(filename, CG_MODE_READ, &cgid), 0, 0);
452     PetscCheck(cgid > 0, PETSC_COMM_SELF, PETSC_ERR_LIB, "cg_open(\"%s\",...) did not return a valid file ID", filename);
453     PetscCall(DMPlexCreateCGNS(comm, cgid, interpolate, dm));
454     PetscCallCGNSClose(cg_close(cgid), 0, 0);
455   }
456   PetscFunctionReturn(PETSC_SUCCESS);
457 }
458 
459 PetscErrorCode DMPlexCreateCGNS_Internal_Serial(MPI_Comm comm, PetscInt cgid, PetscBool interpolate, DM *dm)
460 {
461   PetscMPIInt  num_proc, rank;
462   DM           cdm;
463   DMLabel      label;
464   PetscSection coordSection;
465   Vec          coordinates;
466   PetscScalar *coords;
467   PetscInt    *cellStart, *vertStart, v;
468   PetscInt     labelIdRange[2], labelId;
469   /* Read from file */
470   char      basename[CGIO_MAX_NAME_LENGTH + 1];
471   char      buffer[CGIO_MAX_NAME_LENGTH + 1];
472   int       dim = 0, physDim = 0, coordDim = 0, numVertices = 0, numCells = 0;
473   int       nzones = 0;
474   const int B      = 1; // Only support single base
475 
476   PetscFunctionBegin;
477   PetscCallMPI(MPI_Comm_rank(comm, &rank));
478   PetscCallMPI(MPI_Comm_size(comm, &num_proc));
479   PetscCall(DMCreate(comm, dm));
480   PetscCall(DMSetType(*dm, DMPLEX));
481 
482   /* Open CGNS II file and read basic information on rank 0, then broadcast to all processors */
483   if (rank == 0) {
484     int nbases, z;
485 
486     PetscCallCGNSRead(cg_nbases(cgid, &nbases), *dm, 0);
487     PetscCheck(nbases <= 1, PETSC_COMM_SELF, PETSC_ERR_LIB, "CGNS file must have a single base, not %d", nbases);
488     PetscCallCGNSRead(cg_base_read(cgid, B, basename, &dim, &physDim), *dm, 0);
489     PetscCallCGNSRead(cg_nzones(cgid, B, &nzones), *dm, 0);
490     PetscCall(PetscCalloc2(nzones + 1, &cellStart, nzones + 1, &vertStart));
491     for (z = 1; z <= nzones; ++z) {
492       cgsize_t sizes[3]; /* Number of vertices, number of cells, number of boundary vertices */
493 
494       PetscCallCGNSRead(cg_zone_read(cgid, B, z, buffer, sizes), *dm, 0);
495       numVertices += sizes[0];
496       numCells += sizes[1];
497       cellStart[z] += sizes[1] + cellStart[z - 1];
498       vertStart[z] += sizes[0] + vertStart[z - 1];
499     }
500     for (z = 1; z <= nzones; ++z) vertStart[z] += numCells;
501     coordDim = dim;
502   }
503   PetscCallMPI(MPI_Bcast(basename, CGIO_MAX_NAME_LENGTH + 1, MPI_CHAR, 0, comm));
504   PetscCallMPI(MPI_Bcast(&dim, 1, MPI_INT, 0, comm));
505   PetscCallMPI(MPI_Bcast(&coordDim, 1, MPI_INT, 0, comm));
506   PetscCallMPI(MPI_Bcast(&nzones, 1, MPI_INT, 0, comm));
507 
508   PetscCall(PetscObjectSetName((PetscObject)*dm, basename));
509   PetscCall(DMSetDimension(*dm, dim));
510   PetscCall(DMCreateLabel(*dm, "celltype"));
511   PetscCall(DMPlexSetChart(*dm, 0, numCells + numVertices));
512 
513   /* Read zone information */
514   if (rank == 0) {
515     int z, c, c_loc;
516 
517     /* Read the cell set connectivity table and build mesh topology
518        CGNS standard requires that cells in a zone be numbered sequentially and be pairwise disjoint. */
519     /* First set sizes */
520     for (z = 1, c = 0; z <= nzones; ++z) {
521       CGNS_ENUMT(ZoneType_t) zonetype;
522       int nsections;
523       CGNS_ENUMT(ElementType_t) cellType;
524       cgsize_t       start, end;
525       int            nbndry, parentFlag;
526       PetscInt       numCorners, pOrder;
527       DMPolytopeType ctype;
528       const int      S = 1; // Only support single section
529 
530       PetscCallCGNSRead(cg_zone_type(cgid, B, z, &zonetype), *dm, 0);
531       PetscCheck(zonetype != CGNS_ENUMV(Structured), PETSC_COMM_SELF, PETSC_ERR_LIB, "Can only handle Unstructured zones for CGNS");
532       PetscCallCGNSRead(cg_nsections(cgid, B, z, &nsections), *dm, 0);
533       PetscCheck(nsections <= 1, PETSC_COMM_SELF, PETSC_ERR_LIB, "CGNS file must have a single section, not %d", nsections);
534       PetscCallCGNSRead(cg_section_read(cgid, B, z, S, buffer, &cellType, &start, &end, &nbndry, &parentFlag), *dm, 0);
535       if (cellType == CGNS_ENUMV(MIXED)) {
536         cgsize_t elementDataSize, *elements;
537         PetscInt off;
538 
539         PetscCallCGNSRead(cg_ElementDataSize(cgid, B, z, S, &elementDataSize), *dm, 0);
540         PetscCall(PetscMalloc1(elementDataSize, &elements));
541         PetscCallCGNSReadData(cg_poly_elements_read(cgid, B, z, S, elements, NULL, NULL), *dm, 0);
542         for (c_loc = start, off = 0; c_loc <= end; ++c_loc, ++c) {
543           PetscCall(CGNSElementTypeGetTopologyInfo((CGNS_ENUMT(ElementType_t))elements[off], &ctype, &numCorners, NULL));
544           PetscCall(CGNSElementTypeGetDiscretizationInfo((CGNS_ENUMT(ElementType_t))elements[off], NULL, &pOrder));
545           PetscCheck(pOrder == 1, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Serial CGNS reader only supports first order elements, not %" PetscInt_FMT " order", pOrder);
546           PetscCall(DMPlexSetConeSize(*dm, c, numCorners));
547           PetscCall(DMPlexSetCellType(*dm, c, ctype));
548           off += numCorners + 1;
549         }
550         PetscCall(PetscFree(elements));
551       } else {
552         PetscCall(CGNSElementTypeGetTopologyInfo(cellType, &ctype, &numCorners, NULL));
553         PetscCall(CGNSElementTypeGetDiscretizationInfo(cellType, NULL, &pOrder));
554         PetscCheck(pOrder == 1, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Serial CGNS reader only supports first order elements, not %" PetscInt_FMT " order", pOrder);
555         for (c_loc = start; c_loc <= end; ++c_loc, ++c) {
556           PetscCall(DMPlexSetConeSize(*dm, c, numCorners));
557           PetscCall(DMPlexSetCellType(*dm, c, ctype));
558         }
559       }
560     }
561     for (v = numCells; v < numCells + numVertices; ++v) PetscCall(DMPlexSetCellType(*dm, v, DM_POLYTOPE_POINT));
562   }
563 
564   PetscCall(DMSetUp(*dm));
565 
566   PetscCall(DMCreateLabel(*dm, "zone"));
567   if (rank == 0) {
568     int z, c, c_loc, v_loc;
569 
570     PetscCall(DMGetLabel(*dm, "zone", &label));
571     for (z = 1, c = 0; z <= nzones; ++z) {
572       CGNS_ENUMT(ElementType_t) cellType;
573       cgsize_t  elementDataSize, *elements, start, end;
574       int       nbndry, parentFlag;
575       PetscInt *cone, numc, numCorners, maxCorners = 27, pOrder;
576       const int S = 1; // Only support single section
577 
578       PetscCallCGNSRead(cg_section_read(cgid, B, z, S, buffer, &cellType, &start, &end, &nbndry, &parentFlag), *dm, 0);
579       numc = end - start;
580       PetscCallCGNSRead(cg_ElementDataSize(cgid, B, z, S, &elementDataSize), *dm, 0);
581       PetscCall(PetscMalloc2(elementDataSize, &elements, maxCorners, &cone));
582       PetscCallCGNSReadData(cg_poly_elements_read(cgid, B, z, S, elements, NULL, NULL), *dm, 0);
583       if (cellType == CGNS_ENUMV(MIXED)) {
584         /* CGNS uses Fortran-based indexing, DMPlex uses C-style and numbers cell first then vertices. */
585         for (c_loc = 0, v = 0; c_loc <= numc; ++c_loc, ++c) {
586           PetscCall(CGNSElementTypeGetTopologyInfo((CGNS_ENUMT(ElementType_t))elements[v], NULL, &numCorners, NULL));
587           PetscCall(CGNSElementTypeGetDiscretizationInfo((CGNS_ENUMT(ElementType_t))elements[v], NULL, &pOrder));
588           PetscCheck(pOrder == 1, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Serial CGNS reader only supports first order elements, not %" PetscInt_FMT " order", pOrder);
589           ++v;
590           for (v_loc = 0; v_loc < numCorners; ++v_loc, ++v) cone[v_loc] = elements[v] + numCells - 1;
591           PetscCall(DMPlexReorderCell(*dm, c, cone));
592           PetscCall(DMPlexSetCone(*dm, c, cone));
593           PetscCall(DMLabelSetValue(label, c, z));
594         }
595       } else {
596         PetscCall(CGNSElementTypeGetTopologyInfo(cellType, NULL, &numCorners, NULL));
597         PetscCall(CGNSElementTypeGetDiscretizationInfo(cellType, NULL, &pOrder));
598         PetscCheck(pOrder == 1, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Serial CGNS reader only supports first order elements, not %" PetscInt_FMT " order", pOrder);
599         /* CGNS uses Fortran-based indexing, DMPlex uses C-style and numbers cell first then vertices. */
600         for (c_loc = 0, v = 0; c_loc <= numc; ++c_loc, ++c) {
601           for (v_loc = 0; v_loc < numCorners; ++v_loc, ++v) cone[v_loc] = elements[v] + numCells - 1;
602           PetscCall(DMPlexReorderCell(*dm, c, cone));
603           PetscCall(DMPlexSetCone(*dm, c, cone));
604           PetscCall(DMLabelSetValue(label, c, z));
605         }
606       }
607       PetscCall(PetscFree2(elements, cone));
608     }
609   }
610 
611   PetscCall(DMPlexSymmetrize(*dm));
612   PetscCall(DMPlexStratify(*dm));
613   if (interpolate) PetscCall(DMPlexInterpolateInPlace_Internal(*dm));
614 
615   /* Read coordinates */
616   PetscCall(DMSetCoordinateDim(*dm, coordDim));
617   PetscCall(DMGetCoordinateDM(*dm, &cdm));
618   PetscCall(DMGetLocalSection(cdm, &coordSection));
619   PetscCall(PetscSectionSetNumFields(coordSection, 1));
620   PetscCall(PetscSectionSetFieldComponents(coordSection, 0, coordDim));
621   PetscCall(PetscSectionSetChart(coordSection, numCells, numCells + numVertices));
622   for (v = numCells; v < numCells + numVertices; ++v) {
623     PetscCall(PetscSectionSetDof(coordSection, v, dim));
624     PetscCall(PetscSectionSetFieldDof(coordSection, v, 0, coordDim));
625   }
626   PetscCall(PetscSectionSetUp(coordSection));
627 
628   PetscCall(DMCreateLocalVector(cdm, &coordinates));
629   PetscCall(VecGetArray(coordinates, &coords));
630   if (rank == 0) {
631     PetscInt off = 0;
632     float   *x[3];
633     int      z, d;
634 
635     PetscCall(PetscMalloc3(numVertices, &x[0], numVertices, &x[1], numVertices, &x[2]));
636     for (z = 1; z <= nzones; ++z) {
637       CGNS_ENUMT(DataType_t) datatype;
638       cgsize_t sizes[3]; /* Number of vertices, number of cells, number of boundary vertices */
639       cgsize_t range_min[3] = {1, 1, 1};
640       cgsize_t range_max[3] = {1, 1, 1};
641       int      ngrids, ncoords;
642 
643       PetscCallCGNSRead(cg_zone_read(cgid, B, z, buffer, sizes), *dm, 0);
644       range_max[0] = sizes[0];
645       PetscCallCGNSRead(cg_ngrids(cgid, B, z, &ngrids), *dm, 0);
646       PetscCheck(ngrids <= 1, PETSC_COMM_SELF, PETSC_ERR_LIB, "CGNS file must have a single grid, not %d", ngrids);
647       PetscCallCGNSRead(cg_ncoords(cgid, B, z, &ncoords), *dm, 0);
648       PetscCheck(ncoords == coordDim, PETSC_COMM_SELF, PETSC_ERR_LIB, "CGNS file must have a coordinate array for each dimension, not %d", ncoords);
649       for (d = 0; d < coordDim; ++d) {
650         PetscCallCGNSRead(cg_coord_info(cgid, B, z, 1 + d, &datatype, buffer), *dm, 0);
651         PetscCallCGNSReadData(cg_coord_read(cgid, B, z, buffer, CGNS_ENUMV(RealSingle), range_min, range_max, x[d]), *dm, 0);
652       }
653       if (coordDim >= 1) {
654         for (v = 0; v < sizes[0]; ++v) coords[(v + off) * coordDim + 0] = x[0][v];
655       }
656       if (coordDim >= 2) {
657         for (v = 0; v < sizes[0]; ++v) coords[(v + off) * coordDim + 1] = x[1][v];
658       }
659       if (coordDim >= 3) {
660         for (v = 0; v < sizes[0]; ++v) coords[(v + off) * coordDim + 2] = x[2][v];
661       }
662       off += sizes[0];
663     }
664     PetscCall(PetscFree3(x[0], x[1], x[2]));
665   }
666   PetscCall(VecRestoreArray(coordinates, &coords));
667 
668   PetscCall(PetscObjectSetName((PetscObject)coordinates, "coordinates"));
669   PetscCall(VecSetBlockSize(coordinates, coordDim));
670   PetscCall(DMSetCoordinatesLocal(*dm, coordinates));
671   PetscCall(VecDestroy(&coordinates));
672 
673   /* Read boundary conditions */
674   PetscCall(DMGetNumLabels(*dm, &labelIdRange[0]));
675   if (rank == 0) {
676     CGNS_ENUMT(BCType_t) bctype;
677     CGNS_ENUMT(DataType_t) datatype;
678     CGNS_ENUMT(PointSetType_t) pointtype;
679     cgsize_t  *points;
680     PetscReal *normals;
681     int        normal[3];
682     char      *bcname = buffer;
683     cgsize_t   npoints, nnormals;
684     int        z, nbc, bc, c, ndatasets;
685 
686     for (z = 1; z <= nzones; ++z) {
687       PetscCallCGNSRead(cg_nbocos(cgid, B, z, &nbc), *dm, 0);
688       for (bc = 1; bc <= nbc; ++bc) {
689         PetscCallCGNSRead(cg_boco_info(cgid, B, z, bc, bcname, &bctype, &pointtype, &npoints, normal, &nnormals, &datatype, &ndatasets), *dm, 0);
690         PetscCall(DMCreateLabel(*dm, bcname));
691         PetscCall(DMGetLabel(*dm, bcname, &label));
692         PetscCall(PetscMalloc2(npoints, &points, nnormals, &normals));
693         PetscCallCGNSReadData(cg_boco_read(cgid, B, z, bc, points, (void *)normals), *dm, 0);
694         if (pointtype == CGNS_ENUMV(ElementRange)) {
695           // Range of cells: assuming half-open interval
696           for (c = points[0]; c < points[1]; ++c) PetscCall(DMLabelSetValue(label, c - cellStart[z - 1], 1));
697         } else if (pointtype == CGNS_ENUMV(ElementList)) {
698           // List of cells
699           for (c = 0; c < npoints; ++c) PetscCall(DMLabelSetValue(label, points[c] - cellStart[z - 1], 1));
700         } else if (pointtype == CGNS_ENUMV(PointRange)) {
701           CGNS_ENUMT(GridLocation_t) gridloc;
702 
703           // List of points:
704           PetscCallCGNS(cg_goto(cgid, 1, "Zone_t", z, "BC_t", bc, "end"));
705           PetscCallCGNSRead(cg_gridlocation_read(&gridloc), *dm, 0);
706           // Range of points: assuming half-open interval
707           for (c = points[0]; c < points[1]; ++c) {
708             if (gridloc == CGNS_ENUMV(Vertex)) PetscCall(DMLabelSetValue(label, c - vertStart[z - 1], 1));
709             else PetscCall(DMLabelSetValue(label, c - cellStart[z - 1], 1));
710           }
711         } else if (pointtype == CGNS_ENUMV(PointList)) {
712           CGNS_ENUMT(GridLocation_t) gridloc;
713 
714           // List of points:
715           PetscCallCGNS(cg_goto(cgid, 1, "Zone_t", z, "BC_t", bc, "end"));
716           PetscCallCGNSRead(cg_gridlocation_read(&gridloc), *dm, 0);
717           for (c = 0; c < npoints; ++c) {
718             if (gridloc == CGNS_ENUMV(Vertex)) PetscCall(DMLabelSetValue(label, points[c] - vertStart[z - 1], 1));
719             else PetscCall(DMLabelSetValue(label, points[c] - cellStart[z - 1], 1));
720           }
721         } else SETERRQ(comm, PETSC_ERR_SUP, "Unsupported point set type %d", (int)pointtype);
722         PetscCall(PetscFree2(points, normals));
723       }
724     }
725     PetscCall(PetscFree2(cellStart, vertStart));
726   }
727   PetscCall(DMGetNumLabels(*dm, &labelIdRange[1]));
728   PetscCallMPI(MPI_Bcast(labelIdRange, 2, MPIU_INT, 0, comm));
729 
730   /* Create BC labels at all processes */
731   for (labelId = labelIdRange[0]; labelId < labelIdRange[1]; ++labelId) {
732     char       *labelName = buffer;
733     size_t      len       = sizeof(buffer);
734     const char *locName;
735 
736     if (rank == 0) {
737       PetscCall(DMGetLabelByNum(*dm, labelId, &label));
738       PetscCall(PetscObjectGetName((PetscObject)label, &locName));
739       PetscCall(PetscStrncpy(labelName, locName, len));
740     }
741     PetscCallMPI(MPI_Bcast(labelName, (PetscMPIInt)len, MPIU_INT, 0, comm));
742     PetscCallMPI(DMCreateLabel(*dm, labelName));
743   }
744   PetscFunctionReturn(PETSC_SUCCESS);
745 }
746 
747 PetscErrorCode DMPlexCreateCGNS_Internal_Parallel(MPI_Comm comm, PetscInt cgid, PetscBool interpolate, DM *dm)
748 {
749   PetscMPIInt num_proc, rank;
750   /* Read from file */
751   char     basename[CGIO_MAX_NAME_LENGTH + 1];
752   char     buffer[CGIO_MAX_NAME_LENGTH + 1];
753   int      dim = 0, physDim = 0, coordDim = 0;
754   PetscInt NVertices = 0, NCells = 0;
755   int      nzones = 0, nbases;
756   int      z      = 1; // Only supports single zone files
757   int      B      = 1; // Only supports single base
758 
759   PetscFunctionBegin;
760   PetscCallMPI(MPI_Comm_rank(comm, &rank));
761   PetscCallMPI(MPI_Comm_size(comm, &num_proc));
762   PetscCall(DMCreate(comm, dm));
763   PetscCall(DMSetType(*dm, DMPLEX));
764 
765   PetscCallCGNSRead(cg_nbases(cgid, &nbases), *dm, 0);
766   PetscCheck(nbases <= 1, PETSC_COMM_SELF, PETSC_ERR_LIB, "CGNS file must have a single base, not %d", nbases);
767   //  From the CGNS web page                 cell_dim  phys_dim (embedding space in PETSc) CGNS defines as length of spatial vectors/components)
768   PetscCallCGNSRead(cg_base_read(cgid, B, basename, &dim, &physDim), *dm, 0);
769   PetscCallCGNSRead(cg_nzones(cgid, B, &nzones), *dm, 0);
770   PetscCheck(nzones == 1, PETSC_COMM_SELF, PETSC_ERR_LIB, "Parallel reader limited to one zone, not %d", nzones);
771   {
772     cgsize_t sizes[3]; /* Number of vertices, number of cells, number of boundary vertices */
773 
774     PetscCallCGNSRead(cg_zone_read(cgid, B, z, buffer, sizes), *dm, 0);
775     NVertices = sizes[0];
776     NCells    = sizes[1];
777   }
778 
779   PetscCall(PetscObjectSetName((PetscObject)*dm, basename));
780   PetscCall(DMSetDimension(*dm, dim));
781   coordDim = dim;
782 
783   // This is going to be a headache for mixed-topology and multiple sections. We may have to restore reading the data twice (once before  the SetChart
784   // call to get this right but continuing for now with single section, single topology, one zone.
785   // establish element ranges for my rank
786   PetscInt    mystarte, myende, mystartv, myendv, myownede, myownedv;
787   PetscLayout elem_map, vtx_map;
788   PetscCall(PetscLayoutCreateFromSizes(comm, PETSC_DECIDE, NCells, 1, &elem_map));
789   PetscCall(PetscLayoutCreateFromSizes(comm, PETSC_DECIDE, NVertices, 1, &vtx_map));
790   PetscCall(PetscLayoutGetRange(elem_map, &mystarte, &myende));
791   PetscCall(PetscLayoutGetLocalSize(elem_map, &myownede));
792   PetscCall(PetscLayoutGetRange(vtx_map, &mystartv, &myendv));
793   PetscCall(PetscLayoutGetLocalSize(vtx_map, &myownedv));
794 
795   // -- Build Plex in parallel
796   DMPolytopeType dm_cell_type = DM_POLYTOPE_UNKNOWN;
797   PetscInt       pOrder = 1, numClosure = -1;
798   cgsize_t      *elements;
799   {
800     int        nsections;
801     PetscInt  *elementsQ1, numCorners = -1;
802     const int *perm;
803     cgsize_t   start, end; // Throwaway
804 
805     cg_nsections(cgid, B, z, &nsections);
806     // Read element connectivity
807     for (int index_sect = 1; index_sect <= nsections; index_sect++) {
808       int      nbndry, parentFlag;
809       PetscInt cell_dim;
810       CGNS_ENUMT(ElementType_t) cellType;
811 
812       PetscCallCGNSRead(cg_section_read(cgid, B, z, index_sect, buffer, &cellType, &start, &end, &nbndry, &parentFlag), *dm, 0);
813 
814       PetscCall(CGNSElementTypeGetTopologyInfo(cellType, &dm_cell_type, &numCorners, &cell_dim));
815       // Skip over element that are not max dimension (ie. boundary elements)
816       if (cell_dim != dim) continue;
817       PetscCall(CGNSElementTypeGetDiscretizationInfo(cellType, &numClosure, &pOrder));
818       PetscCall(PetscMalloc1(myownede * numClosure, &elements));
819       PetscCallCGNSReadData(cgp_elements_read_data(cgid, B, z, index_sect, mystarte + 1, myende, elements), *dm, 0);
820       for (PetscInt v = 0; v < myownede * numClosure; ++v) elements[v] -= 1; // 0 based
821       break;
822     }
823 
824     // Create corners-only connectivity
825     PetscCall(PetscMalloc1(myownede * numCorners, &elementsQ1));
826     PetscCall(DMPlexCGNSGetPermutation_Internal(dm_cell_type, numCorners, NULL, &perm));
827     for (PetscInt e = 0; e < myownede; ++e) {
828       for (PetscInt v = 0; v < numCorners; ++v) elementsQ1[e * numCorners + perm[v]] = elements[e * numClosure + v];
829     }
830 
831     // Build cell-vertex Plex
832     PetscCall(DMPlexBuildFromCellListParallel(*dm, myownede, myownedv, NVertices, numCorners, elementsQ1, NULL, NULL));
833     PetscCall(DMViewFromOptions(*dm, NULL, "-corner_dm_view"));
834     PetscCall(PetscFree(elementsQ1));
835   }
836 
837   if (interpolate) PetscCall(DMPlexInterpolateInPlace_Internal(*dm));
838 
839   // -- Create SF for naive nodal-data read to elements
840   PetscSF plex_to_cgns_sf;
841   {
842     PetscInt     nleaves, num_comp;
843     PetscInt    *leaf, num_leaves = 0;
844     PetscInt     cStart, cEnd;
845     const int   *perm;
846     PetscSF      cgns_to_local_sf;
847     PetscSection local_section;
848     PetscFE      fe;
849 
850     // sfNatural requires PetscSection to handle DMDistribute, so we use PetscFE to define the section
851     // Use number of components = 1 to work with just the nodes themselves
852     PetscCall(PetscFECreateLagrangeByCell(PETSC_COMM_SELF, dim, 1, dm_cell_type, pOrder, PETSC_DETERMINE, &fe));
853     PetscCall(PetscObjectSetName((PetscObject)fe, "FE for sfNatural"));
854     PetscCall(DMAddField(*dm, NULL, (PetscObject)fe));
855     PetscCall(DMCreateDS(*dm));
856     PetscCall(PetscFEDestroy(&fe));
857 
858     PetscCall(DMGetLocalSection(*dm, &local_section));
859     PetscCall(PetscSectionViewFromOptions(local_section, NULL, "-fe_natural_section_view"));
860     PetscCall(PetscSectionGetFieldComponents(local_section, 0, &num_comp));
861     PetscCall(PetscSectionGetStorageSize(local_section, &nleaves));
862     nleaves /= num_comp;
863     PetscCall(PetscMalloc1(nleaves, &leaf));
864     for (PetscInt i = 0; i < nleaves; i++) leaf[i] = -1;
865 
866     // Get the permutation from CGNS closure numbering to PLEX closure numbering
867     PetscCall(DMPlexCGNSGetPermutation_Internal(dm_cell_type, numClosure, NULL, &perm));
868     PetscCall(DMPlexGetHeightStratum(*dm, 0, &cStart, &cEnd));
869     for (PetscInt cell = cStart; cell < cEnd; ++cell) {
870       PetscInt num_closure_dof, *closure_idx = NULL;
871 
872       PetscCall(DMPlexGetClosureIndices(*dm, local_section, local_section, cell, PETSC_FALSE, &num_closure_dof, &closure_idx, NULL, NULL));
873       PetscAssert(numClosure * num_comp == num_closure_dof, comm, PETSC_ERR_PLIB, "Closure dof size does not match polytope");
874       for (PetscInt i = 0; i < numClosure; i++) {
875         PetscInt li = closure_idx[perm[i] * num_comp] / num_comp;
876         if (li < 0) continue;
877 
878         PetscInt cgns_idx = elements[cell * numClosure + i];
879         if (leaf[li] == -1) {
880           leaf[li] = cgns_idx;
881           num_leaves++;
882         } else PetscAssert(leaf[li] == cgns_idx, PETSC_COMM_SELF, PETSC_ERR_PLIB, "leaf does not match previously set");
883       }
884       PetscCall(DMPlexRestoreClosureIndices(*dm, local_section, local_section, cell, PETSC_FALSE, &num_closure_dof, &closure_idx, NULL, NULL));
885     }
886     PetscAssert(num_leaves == nleaves, PETSC_COMM_SELF, PETSC_ERR_PLIB, "leaf count in closure does not match nleaves");
887     PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)*dm), &cgns_to_local_sf));
888     PetscCall(PetscSFSetGraphLayout(cgns_to_local_sf, vtx_map, nleaves, NULL, PETSC_USE_POINTER, leaf));
889     PetscCall(PetscObjectSetName((PetscObject)cgns_to_local_sf, "CGNS to Plex SF"));
890     PetscCall(PetscSFViewFromOptions(cgns_to_local_sf, NULL, "-CGNStoPlex_sf_view"));
891     PetscCall(PetscFree(leaf));
892     PetscCall(PetscFree(elements));
893 
894     { // Convert cgns_to_local to global_to_cgns
895       PetscSF sectionsf, cgns_to_global_sf;
896 
897       PetscCall(DMGetSectionSF(*dm, &sectionsf));
898       PetscCall(PetscSFComposeInverse(cgns_to_local_sf, sectionsf, &cgns_to_global_sf));
899       PetscCall(PetscSFDestroy(&cgns_to_local_sf));
900       PetscCall(PetscSFCreateInverseSF(cgns_to_global_sf, &plex_to_cgns_sf));
901       PetscCall(PetscObjectSetName((PetscObject)plex_to_cgns_sf, "Global Plex to CGNS"));
902       PetscCall(PetscSFDestroy(&cgns_to_global_sf));
903     }
904   }
905 
906   { // -- Set coordinates for DM
907     PetscScalar *coords;
908     float       *x[3];
909     double      *xd[3];
910     PetscBool    read_with_double;
911     PetscFE      cfe;
912 
913     // Setup coordinate space first. Use pOrder here for isoparametric; revisit with CPEX-0045 High Order.
914     PetscCall(PetscFECreateLagrangeByCell(PETSC_COMM_SELF, dim, coordDim, dm_cell_type, pOrder, PETSC_DETERMINE, &cfe));
915     PetscCall(DMSetCoordinateDisc(*dm, cfe, PETSC_FALSE, PETSC_FALSE));
916     PetscCall(PetscFEDestroy(&cfe));
917 
918     { // Determine if coords are written in single or double precision
919       CGNS_ENUMT(DataType_t) datatype;
920 
921       PetscCallCGNSRead(cg_coord_info(cgid, B, z, 1, &datatype, buffer), *dm, 0);
922       read_with_double = datatype == CGNS_ENUMV(RealDouble) ? PETSC_TRUE : PETSC_FALSE;
923     }
924 
925     // Read coords from file and set into component-major ordering
926     if (read_with_double) PetscCall(PetscMalloc3(myownedv, &xd[0], myownedv, &xd[1], myownedv, &xd[2]));
927     else PetscCall(PetscMalloc3(myownedv, &x[0], myownedv, &x[1], myownedv, &x[2]));
928     PetscCall(PetscMalloc1(myownedv * coordDim, &coords));
929     {
930       cgsize_t sizes[3]; /* Number of vertices, number of cells, number of boundary vertices */
931       cgsize_t range_min[3] = {mystartv + 1, 1, 1};
932       cgsize_t range_max[3] = {myendv, 1, 1};
933       int      ngrids, ncoords;
934 
935       PetscCallCGNSRead(cg_zone_read(cgid, B, z, buffer, sizes), *dm, 0);
936       PetscCallCGNSRead(cg_ngrids(cgid, B, z, &ngrids), *dm, 0);
937       PetscCheck(ngrids <= 1, PETSC_COMM_SELF, PETSC_ERR_LIB, "CGNS file must have a single grid, not %d", ngrids);
938       PetscCallCGNSRead(cg_ncoords(cgid, B, z, &ncoords), *dm, 0);
939       PetscCheck(ncoords == coordDim, PETSC_COMM_SELF, PETSC_ERR_LIB, "CGNS file must have a coordinate array for each dimension, not %d", ncoords);
940       if (read_with_double) {
941         for (int d = 0; d < coordDim; ++d) PetscCallCGNSReadData(cgp_coord_read_data(cgid, B, z, (d + 1), range_min, range_max, xd[d]), *dm, 0);
942         if (coordDim >= 1) {
943           for (PetscInt v = 0; v < myownedv; ++v) coords[v * coordDim + 0] = xd[0][v];
944         }
945         if (coordDim >= 2) {
946           for (PetscInt v = 0; v < myownedv; ++v) coords[v * coordDim + 1] = xd[1][v];
947         }
948         if (coordDim >= 3) {
949           for (PetscInt v = 0; v < myownedv; ++v) coords[v * coordDim + 2] = xd[2][v];
950         }
951       } else {
952         for (int d = 0; d < coordDim; ++d) PetscCallCGNSReadData(cgp_coord_read_data(cgid, 1, z, (d + 1), range_min, range_max, x[d]), *dm, 0);
953         if (coordDim >= 1) {
954           for (PetscInt v = 0; v < myownedv; ++v) coords[v * coordDim + 0] = x[0][v];
955         }
956         if (coordDim >= 2) {
957           for (PetscInt v = 0; v < myownedv; ++v) coords[v * coordDim + 1] = x[1][v];
958         }
959         if (coordDim >= 3) {
960           for (PetscInt v = 0; v < myownedv; ++v) coords[v * coordDim + 2] = x[2][v];
961         }
962       }
963     }
964     if (read_with_double) PetscCall(PetscFree3(xd[0], xd[1], xd[2]));
965     else PetscCall(PetscFree3(x[0], x[1], x[2]));
966 
967     { // Reduce CGNS-ordered coordinate nodes to Plex ordering, and set DM's coordinates
968       Vec          coord_global;
969       MPI_Datatype unit;
970       PetscScalar *coord_global_array;
971       DM           cdm;
972 
973       PetscCall(DMGetCoordinateDM(*dm, &cdm));
974       PetscCall(DMCreateGlobalVector(cdm, &coord_global));
975       PetscCall(VecGetArrayWrite(coord_global, &coord_global_array));
976       PetscCallMPI(MPI_Type_contiguous(coordDim, MPIU_SCALAR, &unit));
977       PetscCallMPI(MPI_Type_commit(&unit));
978       PetscCall(PetscSFReduceBegin(plex_to_cgns_sf, unit, coords, coord_global_array, MPI_REPLACE));
979       PetscCall(PetscSFReduceEnd(plex_to_cgns_sf, unit, coords, coord_global_array, MPI_REPLACE));
980       PetscCall(VecRestoreArrayWrite(coord_global, &coord_global_array));
981       PetscCallMPI(MPI_Type_free(&unit));
982       PetscCall(DMSetCoordinates(*dm, coord_global));
983       PetscCall(VecDestroy(&coord_global));
984     }
985     PetscCall(PetscFree(coords));
986   }
987 
988   // -- Set sfNatural for solution vectors in CGNS file
989   // NOTE: We set sfNatural to be the map between the original CGNS ordering of nodes and the Plex ordering of nodes.
990   PetscCall(PetscSFViewFromOptions(plex_to_cgns_sf, NULL, "-sfNatural_init_view"));
991   PetscCall(DMSetNaturalSF(*dm, plex_to_cgns_sf));
992   PetscCall(DMSetUseNatural(*dm, PETSC_TRUE));
993   PetscCall(PetscSFDestroy(&plex_to_cgns_sf));
994 
995   PetscCall(PetscLayoutDestroy(&elem_map));
996   PetscCall(PetscLayoutDestroy(&vtx_map));
997   PetscFunctionReturn(PETSC_SUCCESS);
998 }
999 
1000 // node_l2g must be freed
1001 static PetscErrorCode DMPlexCreateNodeNumbering(DM dm, PetscInt *num_local_nodes, PetscInt *num_global_nodes, PetscInt *nStart, PetscInt *nEnd, const PetscInt **node_l2g)
1002 {
1003   PetscSection    local_section;
1004   PetscSF         point_sf;
1005   PetscInt        pStart, pEnd, spStart, spEnd, *points, nleaves, ncomp, *nodes;
1006   PetscMPIInt     comm_size;
1007   const PetscInt *ilocal, field = 0;
1008 
1009   PetscFunctionBegin;
1010   *num_local_nodes  = -1;
1011   *num_global_nodes = -1;
1012   *nStart           = -1;
1013   *nEnd             = -1;
1014   *node_l2g         = NULL;
1015 
1016   PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)dm), &comm_size));
1017   PetscCall(DMGetLocalSection(dm, &local_section));
1018   PetscCall(DMPlexGetChart(dm, &pStart, &pEnd));
1019   PetscCall(PetscSectionGetChart(local_section, &spStart, &spEnd));
1020   PetscCall(DMGetPointSF(dm, &point_sf));
1021   if (comm_size == 1) nleaves = 0;
1022   else PetscCall(PetscSFGetGraph(point_sf, NULL, &nleaves, &ilocal, NULL));
1023   PetscCall(PetscSectionGetFieldComponents(local_section, field, &ncomp));
1024 
1025   PetscInt local_node = 0, owned_node = 0, owned_start = 0;
1026   for (PetscInt p = spStart, leaf = 0; p < spEnd; p++) {
1027     PetscInt dof;
1028     PetscCall(PetscSectionGetFieldDof(local_section, p, field, &dof));
1029     PetscAssert(dof % ncomp == 0, PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "Field dof %" PetscInt_FMT " must be divisible by components %" PetscInt_FMT, dof, ncomp);
1030     local_node += dof / ncomp;
1031     if (leaf < nleaves && p == ilocal[leaf]) { // skip points owned by a different process
1032       leaf++;
1033     } else {
1034       owned_node += dof / ncomp;
1035     }
1036   }
1037   PetscCallMPI(MPI_Exscan(&owned_node, &owned_start, 1, MPIU_INT, MPI_SUM, PetscObjectComm((PetscObject)dm)));
1038   PetscCall(PetscMalloc1(pEnd - pStart, &points));
1039   owned_node = 0;
1040   for (PetscInt p = spStart, leaf = 0; p < spEnd; p++) {
1041     if (leaf < nleaves && p == ilocal[leaf]) { // skip points owned by a different process
1042       points[p - pStart] = -1;
1043       leaf++;
1044       continue;
1045     }
1046     PetscInt dof, offset;
1047     PetscCall(PetscSectionGetFieldDof(local_section, p, field, &dof));
1048     PetscCall(PetscSectionGetFieldOffset(local_section, p, field, &offset));
1049     PetscAssert(offset % ncomp == 0, PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "Field offset %" PetscInt_FMT " must be divisible by components %" PetscInt_FMT, offset, ncomp);
1050     points[p - pStart] = owned_start + owned_node;
1051     owned_node += dof / ncomp;
1052   }
1053   if (comm_size > 1) {
1054     PetscCall(PetscSFBcastBegin(point_sf, MPIU_INT, points, points, MPI_REPLACE));
1055     PetscCall(PetscSFBcastEnd(point_sf, MPIU_INT, points, points, MPI_REPLACE));
1056   }
1057 
1058   // Set up global indices for each local node
1059   PetscCall(PetscMalloc1(local_node, &nodes));
1060   for (PetscInt p = spStart; p < spEnd; p++) {
1061     PetscInt dof, offset;
1062     PetscCall(PetscSectionGetFieldDof(local_section, p, field, &dof));
1063     PetscCall(PetscSectionGetFieldOffset(local_section, p, field, &offset));
1064     for (PetscInt n = 0; n < dof / ncomp; n++) nodes[offset / ncomp + n] = points[p - pStart] + n;
1065   }
1066   PetscCall(PetscFree(points));
1067   *num_local_nodes = local_node;
1068   *nStart          = owned_start;
1069   *nEnd            = owned_start + owned_node;
1070   PetscCallMPI(MPIU_Allreduce(&owned_node, num_global_nodes, 1, MPIU_INT, MPI_SUM, PetscObjectComm((PetscObject)dm)));
1071   *node_l2g = nodes;
1072   PetscFunctionReturn(PETSC_SUCCESS);
1073 }
1074 
1075 PetscErrorCode DMView_PlexCGNS(DM dm, PetscViewer viewer)
1076 {
1077   PetscViewer_CGNS *cgv = (PetscViewer_CGNS *)viewer->data;
1078   PetscInt          fvGhostStart;
1079   PetscInt          topo_dim, coord_dim, num_global_elems;
1080   PetscInt          cStart, cEnd, num_local_nodes, num_global_nodes, nStart, nEnd;
1081   const PetscInt   *node_l2g;
1082   Vec               coord;
1083   DM                colloc_dm, cdm;
1084   PetscMPIInt       size;
1085   const char       *dm_name;
1086   int               base, zone;
1087   cgsize_t          isize[3];
1088 
1089   PetscFunctionBegin;
1090   if (!cgv->file_num) {
1091     PetscInt time_step;
1092     PetscCall(DMGetOutputSequenceNumber(dm, &time_step, NULL));
1093     PetscCall(PetscViewerCGNSFileOpen_Internal(viewer, time_step));
1094   }
1095   PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)dm), &size));
1096   PetscCall(DMGetDimension(dm, &topo_dim));
1097   PetscCall(DMGetCoordinateDim(dm, &coord_dim));
1098   PetscCall(PetscObjectGetName((PetscObject)dm, &dm_name));
1099   PetscCallCGNSWrite(cg_base_write(cgv->file_num, dm_name, topo_dim, coord_dim, &base), dm, viewer);
1100   PetscCallCGNS(cg_goto(cgv->file_num, base, NULL));
1101   PetscCallCGNSWrite(cg_dataclass_write(CGNS_ENUMV(NormalizedByDimensional)), dm, viewer);
1102 
1103   {
1104     PetscFE        fe, fe_coord;
1105     PetscClassId   ds_id;
1106     PetscDualSpace dual_space, dual_space_coord;
1107     PetscInt       num_fields, field_order = -1, field_order_coord;
1108     PetscBool      is_simplex;
1109     PetscCall(DMGetNumFields(dm, &num_fields));
1110     if (num_fields > 0) {
1111       PetscCall(DMGetField(dm, 0, NULL, (PetscObject *)&fe));
1112       PetscCall(PetscObjectGetClassId((PetscObject)fe, &ds_id));
1113       if (ds_id != PETSCFE_CLASSID) {
1114         fe = NULL;
1115         if (ds_id == PETSCFV_CLASSID) field_order = -1; // use whatever is present for coords; field will be CellCenter
1116         else field_order = 1;                           // assume vertex-based linear elements
1117       }
1118     } else fe = NULL;
1119     if (fe) {
1120       PetscCall(PetscFEGetDualSpace(fe, &dual_space));
1121       PetscCall(PetscDualSpaceGetOrder(dual_space, &field_order));
1122     }
1123     PetscCall(DMGetCoordinateDM(dm, &cdm));
1124     PetscCall(DMGetField(cdm, 0, NULL, (PetscObject *)&fe_coord));
1125     {
1126       PetscClassId id;
1127       PetscCall(PetscObjectGetClassId((PetscObject)fe_coord, &id));
1128       if (id != PETSCFE_CLASSID) fe_coord = NULL;
1129     }
1130     if (fe_coord) {
1131       PetscCall(PetscFEGetDualSpace(fe_coord, &dual_space_coord));
1132       PetscCall(PetscDualSpaceGetOrder(dual_space_coord, &field_order_coord));
1133     } else field_order_coord = 1;
1134     if (field_order > 0 && field_order != field_order_coord) {
1135       PetscInt quadrature_order = field_order;
1136       PetscCall(DMClone(dm, &colloc_dm));
1137       { // Inform the new colloc_dm that it is a coordinate DM so isoperiodic affine corrections can be applied
1138         const PetscSF *face_sfs;
1139         PetscInt       num_face_sfs;
1140         PetscCall(DMPlexGetIsoperiodicFaceSF(dm, &num_face_sfs, &face_sfs));
1141         PetscCall(DMPlexSetIsoperiodicFaceSF(colloc_dm, num_face_sfs, (PetscSF *)face_sfs));
1142         if (face_sfs) colloc_dm->periodic.setup = DMPeriodicCoordinateSetUp_Internal;
1143       }
1144       PetscCall(DMPlexIsSimplex(dm, &is_simplex));
1145       PetscCall(PetscFECreateLagrange(PetscObjectComm((PetscObject)dm), topo_dim, coord_dim, is_simplex, field_order, quadrature_order, &fe));
1146       PetscCall(DMSetCoordinateDisc(colloc_dm, fe, PETSC_FALSE, PETSC_TRUE));
1147       PetscCall(PetscFEDestroy(&fe));
1148     } else {
1149       PetscCall(PetscObjectReference((PetscObject)dm));
1150       colloc_dm = dm;
1151     }
1152   }
1153   PetscCall(DMGetCoordinateDM(colloc_dm, &cdm));
1154   PetscCall(DMPlexCreateNodeNumbering(cdm, &num_local_nodes, &num_global_nodes, &nStart, &nEnd, &node_l2g));
1155   PetscCall(DMGetCoordinatesLocal(colloc_dm, &coord));
1156   PetscCall(DMPlexGetHeightStratum(dm, 0, &cStart, &cEnd));
1157   PetscCall(DMPlexGetCellTypeStratum(dm, DM_POLYTOPE_FV_GHOST, &fvGhostStart, NULL));
1158   if (fvGhostStart >= 0) cEnd = fvGhostStart;
1159   num_global_elems = cEnd - cStart;
1160   PetscCallMPI(MPIU_Allreduce(MPI_IN_PLACE, &num_global_elems, 1, MPIU_INT, MPI_SUM, PetscObjectComm((PetscObject)dm)));
1161   isize[0] = num_global_nodes;
1162   isize[1] = num_global_elems;
1163   isize[2] = 0;
1164   PetscCallCGNSWrite(cg_zone_write(cgv->file_num, base, "Zone", isize, CGNS_ENUMV(Unstructured), &zone), dm, viewer);
1165 
1166   {
1167     const PetscScalar *X;
1168     PetscScalar       *x;
1169     int                coord_ids[3];
1170 
1171     PetscCall(VecGetArrayRead(coord, &X));
1172     for (PetscInt d = 0; d < coord_dim; d++) {
1173       const double exponents[] = {0, 1, 0, 0, 0};
1174       char         coord_name[64];
1175       PetscCall(PetscSNPrintf(coord_name, sizeof coord_name, "Coordinate%c", 'X' + (int)d));
1176       PetscCallCGNSWrite(cgp_coord_write(cgv->file_num, base, zone, CGNS_ENUMV(RealDouble), coord_name, &coord_ids[d]), dm, viewer);
1177       PetscCallCGNS(cg_goto(cgv->file_num, base, "Zone_t", zone, "GridCoordinates", 0, coord_name, 0, NULL));
1178       PetscCallCGNSWrite(cg_exponents_write(CGNS_ENUMV(RealDouble), exponents), dm, viewer);
1179     }
1180 
1181     int        section;
1182     cgsize_t   e_owned, e_global, e_start, *conn = NULL;
1183     const int *perm;
1184     CGNS_ENUMT(ElementType_t) element_type = CGNS_ENUMV(ElementTypeNull);
1185     {
1186       PetscCall(PetscMalloc1(nEnd - nStart, &x));
1187       for (PetscInt d = 0; d < coord_dim; d++) {
1188         for (PetscInt n = 0; n < num_local_nodes; n++) {
1189           PetscInt gn = node_l2g[n];
1190           if (gn < nStart || nEnd <= gn) continue;
1191           x[gn - nStart] = X[n * coord_dim + d];
1192         }
1193         // CGNS nodes use 1-based indexing
1194         cgsize_t start = nStart + 1, end = nEnd;
1195         PetscCallCGNSWriteData(cgp_coord_write_data(cgv->file_num, base, zone, coord_ids[d], &start, &end, x), dm, viewer);
1196       }
1197       PetscCall(PetscFree(x));
1198       PetscCall(VecRestoreArrayRead(coord, &X));
1199     }
1200 
1201     e_owned = cEnd - cStart;
1202     if (e_owned > 0) {
1203       DMPolytopeType cell_type;
1204 
1205       PetscCall(DMPlexGetCellType(dm, cStart, &cell_type));
1206       for (PetscInt i = cStart, c = 0; i < cEnd; i++) {
1207         PetscInt closure_dof, *closure_indices, elem_size;
1208 
1209         PetscCall(DMPlexGetClosureIndices(cdm, cdm->localSection, cdm->localSection, i, PETSC_FALSE, &closure_dof, &closure_indices, NULL, NULL));
1210         elem_size = closure_dof / coord_dim;
1211         if (!conn) PetscCall(PetscMalloc1(e_owned * elem_size, &conn));
1212         PetscCall(DMPlexCGNSGetPermutation_Internal(cell_type, closure_dof / coord_dim, &element_type, &perm));
1213         for (PetscInt j = 0; j < elem_size; j++) conn[c++] = node_l2g[closure_indices[perm[j] * coord_dim] / coord_dim] + 1;
1214         PetscCall(DMPlexRestoreClosureIndices(cdm, cdm->localSection, cdm->localSection, i, PETSC_FALSE, &closure_dof, &closure_indices, NULL, NULL));
1215       }
1216     }
1217 
1218     { // Get global element_type (for ranks that do not have owned elements)
1219       PetscInt local_element_type, global_element_type;
1220 
1221       local_element_type = e_owned > 0 ? element_type : -1;
1222       PetscCallMPI(MPIU_Allreduce(&local_element_type, &global_element_type, 1, MPIU_INT, MPI_MAX, PetscObjectComm((PetscObject)viewer)));
1223       if (local_element_type != -1) PetscCheck(local_element_type == global_element_type, PETSC_COMM_SELF, PETSC_ERR_SUP, "Ranks with different element types not supported");
1224       element_type = (CGNS_ENUMT(ElementType_t))global_element_type;
1225     }
1226     PetscCallMPI(MPIU_Allreduce(&e_owned, &e_global, 1, MPIU_CGSIZE, MPI_SUM, PetscObjectComm((PetscObject)dm)));
1227     PetscCheck(e_global == num_global_elems, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Unexpected number of elements %" PRIdCGSIZE " vs %" PetscInt_FMT, e_global, num_global_elems);
1228     e_start = 0;
1229     PetscCallMPI(MPI_Exscan(&e_owned, &e_start, 1, MPIU_CGSIZE, MPI_SUM, PetscObjectComm((PetscObject)dm)));
1230     PetscCallCGNSWrite(cgp_section_write(cgv->file_num, base, zone, "Elem", element_type, 1, e_global, 0, &section), dm, viewer);
1231     PetscCallCGNSWriteData(cgp_elements_write_data(cgv->file_num, base, zone, section, e_start + 1, e_start + e_owned, conn), dm, viewer);
1232     PetscCall(PetscFree(conn));
1233 
1234     cgv->base            = base;
1235     cgv->zone            = zone;
1236     cgv->node_l2g        = node_l2g;
1237     cgv->num_local_nodes = num_local_nodes;
1238     cgv->nStart          = nStart;
1239     cgv->nEnd            = nEnd;
1240     cgv->eStart          = e_start;
1241     cgv->eEnd            = e_start + e_owned;
1242     if (1) {
1243       PetscMPIInt rank;
1244       int        *efield;
1245       int         sol, field;
1246       DMLabel     label;
1247       PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)dm), &rank));
1248       PetscCall(PetscMalloc1(e_owned, &efield));
1249       for (PetscInt i = 0; i < e_owned; i++) efield[i] = rank;
1250       PetscCallCGNSWrite(cg_sol_write(cgv->file_num, base, zone, "CellInfo", CGNS_ENUMV(CellCenter), &sol), dm, viewer);
1251       PetscCallCGNSWrite(cgp_field_write(cgv->file_num, base, zone, sol, CGNS_ENUMV(Integer), "Rank", &field), dm, viewer);
1252       cgsize_t start = e_start + 1, end = e_start + e_owned;
1253       PetscCallCGNSWriteData(cgp_field_write_data(cgv->file_num, base, zone, sol, field, &start, &end, efield), dm, viewer);
1254       PetscCall(DMGetLabel(dm, "Cell Sets", &label));
1255       if (label) {
1256         for (PetscInt c = cStart; c < cEnd; c++) {
1257           PetscInt value;
1258           PetscCall(DMLabelGetValue(label, c, &value));
1259           efield[c - cStart] = value;
1260         }
1261         PetscCallCGNSWrite(cgp_field_write(cgv->file_num, base, zone, sol, CGNS_ENUMV(Integer), "CellSet", &field), dm, viewer);
1262         PetscCallCGNSWriteData(cgp_field_write_data(cgv->file_num, base, zone, sol, field, &start, &end, efield), dm, viewer);
1263       }
1264       PetscCall(PetscFree(efield));
1265     }
1266   }
1267   PetscCall(DMDestroy(&colloc_dm));
1268   PetscFunctionReturn(PETSC_SUCCESS);
1269 }
1270 
1271 PetscErrorCode VecView_Plex_Local_CGNS(Vec V, PetscViewer viewer)
1272 {
1273   PetscViewer_CGNS  *cgv = (PetscViewer_CGNS *)viewer->data;
1274   DM                 dm;
1275   PetscSection       section;
1276   PetscInt           time_step, num_fields, pStart, pEnd, fvGhostStart;
1277   PetscReal          time, *time_slot;
1278   size_t            *step_slot;
1279   const PetscScalar *v;
1280   char               solution_name[PETSC_MAX_PATH_LEN];
1281   int                sol;
1282 
1283   PetscFunctionBegin;
1284   PetscCall(VecGetDM(V, &dm));
1285   PetscCall(DMGetLocalSection(dm, &section));
1286   PetscCall(PetscSectionGetChart(section, &pStart, &pEnd));
1287   PetscCall(DMPlexGetCellTypeStratum(dm, DM_POLYTOPE_FV_GHOST, &fvGhostStart, NULL));
1288   if (fvGhostStart >= 0) pEnd = fvGhostStart;
1289 
1290   if (!cgv->node_l2g) PetscCall(DMView(dm, viewer));
1291   if (!cgv->grid_loc) { // Determine if writing to cell-centers or to nodes
1292     PetscInt cStart, cEnd;
1293     PetscInt local_grid_loc, global_grid_loc;
1294 
1295     PetscCall(DMPlexGetHeightStratum(dm, 0, &cStart, &cEnd));
1296     if (fvGhostStart >= 0) cEnd = fvGhostStart;
1297     if (cgv->num_local_nodes == 0) local_grid_loc = -1;
1298     else if (cStart == pStart && cEnd == pEnd) local_grid_loc = CGNS_ENUMV(CellCenter);
1299     else local_grid_loc = CGNS_ENUMV(Vertex);
1300 
1301     PetscCallMPI(MPIU_Allreduce(&local_grid_loc, &global_grid_loc, 1, MPIU_INT, MPI_MAX, PetscObjectComm((PetscObject)viewer)));
1302     if (local_grid_loc != -1)
1303       PetscCheck(local_grid_loc == global_grid_loc, PETSC_COMM_SELF, PETSC_ERR_SUP, "Ranks with different grid locations not supported. Local has %" PetscInt_FMT ", allreduce returned %" PetscInt_FMT, local_grid_loc, global_grid_loc);
1304     PetscCheck((global_grid_loc == CGNS_ENUMV(CellCenter)) || (global_grid_loc == CGNS_ENUMV(Vertex)), PetscObjectComm((PetscObject)viewer), PETSC_ERR_SUP, "Grid location should only be CellCenter (%d) or Vertex(%d), but have %" PetscInt_FMT, CGNS_ENUMV(CellCenter), CGNS_ENUMV(Vertex), global_grid_loc);
1305     cgv->grid_loc = (CGNS_ENUMT(GridLocation_t))global_grid_loc;
1306   }
1307   if (!cgv->nodal_field) {
1308     switch (cgv->grid_loc) {
1309     case CGNS_ENUMV(Vertex): {
1310       PetscCall(PetscMalloc1(cgv->nEnd - cgv->nStart, &cgv->nodal_field));
1311     } break;
1312     case CGNS_ENUMV(CellCenter): {
1313       PetscCall(PetscMalloc1(cgv->eEnd - cgv->eStart, &cgv->nodal_field));
1314     } break;
1315     default:
1316       SETERRQ(PETSC_COMM_SELF, PETSC_ERR_SUP, "Can only write for Vertex and CellCenter grid locations");
1317     }
1318   }
1319   if (!cgv->output_times) PetscCall(PetscSegBufferCreate(sizeof(PetscReal), 20, &cgv->output_times));
1320   if (!cgv->output_steps) PetscCall(PetscSegBufferCreate(sizeof(size_t), 20, &cgv->output_steps));
1321 
1322   PetscCall(DMGetOutputSequenceNumber(dm, &time_step, &time));
1323   if (time_step < 0) {
1324     time_step = 0;
1325     time      = 0.;
1326   }
1327   // Avoid "Duplicate child name found" error by not writing an already-written solution.
1328   // This usually occurs when a solution is written and then diverges on the very next timestep.
1329   if (time_step == cgv->previous_output_step) PetscFunctionReturn(PETSC_SUCCESS);
1330 
1331   PetscCall(PetscSegBufferGet(cgv->output_times, 1, &time_slot));
1332   *time_slot = time;
1333   PetscCall(PetscSegBufferGet(cgv->output_steps, 1, &step_slot));
1334   *step_slot = cgv->previous_output_step = time_step;
1335   PetscCall(PetscSNPrintf(solution_name, sizeof solution_name, "FlowSolution%" PetscInt_FMT, time_step));
1336   PetscCallCGNSWrite(cg_sol_write(cgv->file_num, cgv->base, cgv->zone, solution_name, cgv->grid_loc, &sol), V, viewer);
1337   PetscCall(VecGetArrayRead(V, &v));
1338   PetscCall(PetscSectionGetNumFields(section, &num_fields));
1339   for (PetscInt field = 0; field < num_fields; field++) {
1340     PetscInt    ncomp;
1341     const char *field_name;
1342     PetscCall(PetscSectionGetFieldName(section, field, &field_name));
1343     PetscCall(PetscSectionGetFieldComponents(section, field, &ncomp));
1344     for (PetscInt comp = 0; comp < ncomp; comp++) {
1345       int         cgfield;
1346       const char *comp_name;
1347       char        cgns_field_name[32]; // CGNS max field name is 32
1348       CGNS_ENUMT(DataType_t) datatype;
1349       PetscCall(PetscSectionGetComponentName(section, field, comp, &comp_name));
1350       if (ncomp == 1 && comp_name[0] == '0' && comp_name[1] == '\0' && field_name[0] != '\0') PetscCall(PetscStrncpy(cgns_field_name, field_name, sizeof cgns_field_name));
1351       else if (field_name[0] == '\0') PetscCall(PetscStrncpy(cgns_field_name, comp_name, sizeof cgns_field_name));
1352       else PetscCall(PetscSNPrintf(cgns_field_name, sizeof cgns_field_name, "%s.%s", field_name, comp_name));
1353       PetscCall(PetscCGNSDataType(PETSC_SCALAR, &datatype));
1354       PetscCallCGNSWrite(cgp_field_write(cgv->file_num, cgv->base, cgv->zone, sol, datatype, cgns_field_name, &cgfield), V, viewer);
1355       for (PetscInt p = pStart, n = 0; p < pEnd; p++) {
1356         PetscInt off, dof;
1357         PetscCall(PetscSectionGetFieldDof(section, p, field, &dof));
1358         if (dof == 0) continue;
1359         PetscCall(PetscSectionGetFieldOffset(section, p, field, &off));
1360         for (PetscInt c = comp; c < dof; c += ncomp, n++) {
1361           switch (cgv->grid_loc) {
1362           case CGNS_ENUMV(Vertex): {
1363             PetscInt gn = cgv->node_l2g[n];
1364             if (gn < cgv->nStart || cgv->nEnd <= gn) continue;
1365             cgv->nodal_field[gn - cgv->nStart] = v[off + c];
1366           } break;
1367           case CGNS_ENUMV(CellCenter): {
1368             cgv->nodal_field[n] = v[off + c];
1369           } break;
1370           default:
1371             SETERRQ(PETSC_COMM_SELF, PETSC_ERR_SUP, "Can only pack for Vertex and CellCenter grid locations");
1372           }
1373         }
1374       }
1375       // CGNS nodes use 1-based indexing
1376       cgsize_t start, end;
1377       switch (cgv->grid_loc) {
1378       case CGNS_ENUMV(Vertex): {
1379         start = cgv->nStart + 1;
1380         end   = cgv->nEnd;
1381       } break;
1382       case CGNS_ENUMV(CellCenter): {
1383         start = cgv->eStart + 1;
1384         end   = cgv->eEnd;
1385       } break;
1386       default:
1387         SETERRQ(PETSC_COMM_SELF, PETSC_ERR_SUP, "Can only write for Vertex and CellCenter grid locations");
1388       }
1389       PetscCallCGNSWriteData(cgp_field_write_data(cgv->file_num, cgv->base, cgv->zone, sol, cgfield, &start, &end, cgv->nodal_field), V, viewer);
1390     }
1391   }
1392   PetscCall(VecRestoreArrayRead(V, &v));
1393   PetscCall(PetscViewerCGNSCheckBatch_Internal(viewer));
1394   PetscFunctionReturn(PETSC_SUCCESS);
1395 }
1396 
1397 PetscErrorCode VecLoad_Plex_CGNS_Internal(Vec V, PetscViewer viewer)
1398 {
1399   MPI_Comm          comm;
1400   char              buffer[CGIO_MAX_NAME_LENGTH + 1];
1401   PetscViewer_CGNS *cgv                 = (PetscViewer_CGNS *)viewer->data;
1402   int               cgid                = cgv->file_num;
1403   PetscBool         use_parallel_viewer = PETSC_FALSE;
1404   int               z                   = 1; // Only support one zone
1405   int               B                   = 1; // Only support one base
1406   int               numComp;
1407   PetscInt          V_numComps, mystartv, myendv, myownedv;
1408 
1409   PetscFunctionBeginUser;
1410   PetscCall(PetscObjectGetComm((PetscObject)V, &comm));
1411 
1412   PetscCall(PetscOptionsGetBool(NULL, NULL, "-dm_plex_cgns_parallel", &use_parallel_viewer, NULL));
1413   PetscCheck(use_parallel_viewer, comm, PETSC_ERR_USER_INPUT, "Cannot use VecLoad with CGNS file in serial reader; use -dm_plex_cgns_parallel to enable parallel reader");
1414 
1415   { // Get CGNS node ownership information
1416     int         nbases, nzones;
1417     PetscInt    NVertices;
1418     PetscLayout vtx_map;
1419     cgsize_t    sizes[3]; /* Number of vertices, number of cells, number of boundary vertices */
1420 
1421     PetscCallCGNSRead(cg_nbases(cgid, &nbases), V, viewer);
1422     PetscCheck(nbases <= 1, PETSC_COMM_SELF, PETSC_ERR_LIB, "CGNS file must have a single base, not %d", nbases);
1423     PetscCallCGNSRead(cg_nzones(cgid, B, &nzones), V, viewer);
1424     PetscCheck(nzones == 1, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "limited to one zone %d", (int)nzones);
1425 
1426     PetscCallCGNSRead(cg_zone_read(cgid, B, z, buffer, sizes), V, viewer);
1427     NVertices = sizes[0];
1428 
1429     PetscCall(PetscLayoutCreateFromSizes(comm, PETSC_DECIDE, NVertices, 1, &vtx_map));
1430     PetscCall(PetscLayoutGetRange(vtx_map, &mystartv, &myendv));
1431     PetscCall(PetscLayoutGetLocalSize(vtx_map, &myownedv));
1432     PetscCall(PetscLayoutDestroy(&vtx_map));
1433   }
1434 
1435   { // -- Read data from file into Vec
1436     PetscScalar *fields = NULL;
1437     PetscSF      sfNatural;
1438 
1439     { // Check compatibility between sfNatural and the data source and sink
1440       DM       dm;
1441       PetscInt nleaves, nroots, V_local_size;
1442 
1443       PetscCall(VecGetDM(V, &dm));
1444       PetscCall(DMGetNaturalSF(dm, &sfNatural));
1445       PetscCheck(sfNatural, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "DM of Vec must have sfNatural");
1446       PetscCall(PetscSFGetGraph(sfNatural, &nroots, &nleaves, NULL, NULL));
1447       PetscCall(VecGetLocalSize(V, &V_local_size));
1448       PetscCheck(nleaves == myownedv, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Number of locally owned vertices (% " PetscInt_FMT ") must match number of leaves in sfNatural (% " PetscInt_FMT ")", myownedv, nleaves);
1449       PetscCheck(V_local_size % nroots == 0, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Local Vec size (% " PetscInt_FMT ") not evenly divisible by number of roots in sfNatural (% " PetscInt_FMT ")", V_local_size, nroots);
1450       V_numComps = V_local_size / nroots;
1451     }
1452 
1453     { // Read data into component-major ordering
1454       int isol, numSols;
1455       CGNS_ENUMT(DataType_t) datatype;
1456       double *fields_CGNS;
1457 
1458       PetscCallCGNSRead(cg_nsols(cgid, B, z, &numSols), V, viewer);
1459       PetscCall(PetscViewerCGNSGetSolutionFileIndex_Internal(viewer, &isol));
1460       PetscCallCGNSRead(cg_nfields(cgid, B, z, isol, &numComp), V, viewer);
1461       PetscCheck(V_numComps == numComp, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Vec sized for  % " PetscInt_FMT " components per node, but file has %d components per node", V_numComps, numComp);
1462 
1463       cgsize_t range_min[3] = {mystartv + 1, 1, 1};
1464       cgsize_t range_max[3] = {myendv, 1, 1};
1465       PetscCall(PetscMalloc1(myownedv * numComp, &fields_CGNS));
1466       PetscCall(PetscMalloc1(myownedv * numComp, &fields));
1467       for (int d = 0; d < numComp; ++d) {
1468         PetscCallCGNSRead(cg_field_info(cgid, B, z, isol, (d + 1), &datatype, buffer), V, viewer);
1469         PetscCheck(datatype == CGNS_ENUMV(RealDouble), PETSC_COMM_SELF, PETSC_ERR_ARG_NOTSAMETYPE, "Field %s in file is not of type double", buffer);
1470         PetscCallCGNSReadData(cgp_field_read_data(cgid, B, z, isol, (d + 1), range_min, range_max, &fields_CGNS[d * myownedv]), V, viewer);
1471       }
1472       for (int d = 0; d < numComp; ++d) {
1473         for (PetscInt v = 0; v < myownedv; ++v) fields[v * numComp + d] = fields_CGNS[d * myownedv + v];
1474       }
1475       PetscCall(PetscFree(fields_CGNS));
1476     }
1477 
1478     { // Reduce fields into Vec array
1479       PetscScalar *V_array;
1480       MPI_Datatype fieldtype;
1481 
1482       PetscCall(VecGetArrayWrite(V, &V_array));
1483       PetscCallMPI(MPI_Type_contiguous(numComp, MPIU_SCALAR, &fieldtype));
1484       PetscCallMPI(MPI_Type_commit(&fieldtype));
1485       PetscCall(PetscSFReduceBegin(sfNatural, fieldtype, fields, V_array, MPI_REPLACE));
1486       PetscCall(PetscSFReduceEnd(sfNatural, fieldtype, fields, V_array, MPI_REPLACE));
1487       PetscCallMPI(MPI_Type_free(&fieldtype));
1488       PetscCall(VecRestoreArrayWrite(V, &V_array));
1489     }
1490     PetscCall(PetscFree(fields));
1491   }
1492   PetscFunctionReturn(PETSC_SUCCESS);
1493 }
1494