1af0996ceSBarry Smith #include <petsc/private/dmpleximpl.h> /*I "petscdmplex.h" I*/ 2c58f1c22SToby Isaac #include <petsc/private/dmlabelimpl.h> /*I "petscdmlabel.h" I*/ 370034214SMatthew G. Knepley 43c1f0c11SLawrence Mitchell /*@C 53c1f0c11SLawrence Mitchell DMPlexSetAdjacencyUser - Define adjacency in the mesh using a user-provided callback 63c1f0c11SLawrence Mitchell 73c1f0c11SLawrence Mitchell Input Parameters: 83c1f0c11SLawrence Mitchell + dm - The DM object 93c1f0c11SLawrence Mitchell . user - The user callback, may be NULL (to clear the callback) 103c1f0c11SLawrence Mitchell - ctx - context for callback evaluation, may be NULL 113c1f0c11SLawrence Mitchell 123c1f0c11SLawrence Mitchell Level: advanced 133c1f0c11SLawrence Mitchell 143c1f0c11SLawrence Mitchell Notes: 153c1f0c11SLawrence Mitchell The caller of DMPlexGetAdjacency may need to arrange that a large enough array is available for the adjacency. 163c1f0c11SLawrence Mitchell 173c1f0c11SLawrence Mitchell Any setting here overrides other configuration of DMPlex adjacency determination. 183c1f0c11SLawrence Mitchell 19db781477SPatrick Sanan .seealso: `DMSetAdjacency()`, `DMPlexDistribute()`, `DMPlexPreallocateOperator()`, `DMPlexGetAdjacency()`, `DMPlexGetAdjacencyUser()` 203c1f0c11SLawrence Mitchell @*/ 213c1f0c11SLawrence Mitchell PetscErrorCode DMPlexSetAdjacencyUser(DM dm,PetscErrorCode (*user)(DM,PetscInt,PetscInt*,PetscInt[],void*),void *ctx) 223c1f0c11SLawrence Mitchell { 233c1f0c11SLawrence Mitchell DM_Plex *mesh = (DM_Plex *)dm->data; 243c1f0c11SLawrence Mitchell 253c1f0c11SLawrence Mitchell PetscFunctionBegin; 263c1f0c11SLawrence Mitchell PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 273c1f0c11SLawrence Mitchell mesh->useradjacency = user; 283c1f0c11SLawrence Mitchell mesh->useradjacencyctx = ctx; 293c1f0c11SLawrence Mitchell PetscFunctionReturn(0); 303c1f0c11SLawrence Mitchell } 313c1f0c11SLawrence Mitchell 323c1f0c11SLawrence Mitchell /*@C 333c1f0c11SLawrence Mitchell DMPlexGetAdjacencyUser - get the user-defined adjacency callback 343c1f0c11SLawrence Mitchell 353c1f0c11SLawrence Mitchell Input Parameter: 363c1f0c11SLawrence Mitchell . dm - The DM object 373c1f0c11SLawrence Mitchell 383c1f0c11SLawrence Mitchell Output Parameters: 396b867d5aSJose E. Roman + user - The user callback 403c1f0c11SLawrence Mitchell - ctx - context for callback evaluation 413c1f0c11SLawrence Mitchell 423c1f0c11SLawrence Mitchell Level: advanced 433c1f0c11SLawrence Mitchell 44db781477SPatrick Sanan .seealso: `DMSetAdjacency()`, `DMPlexDistribute()`, `DMPlexPreallocateOperator()`, `DMPlexGetAdjacency()`, `DMPlexSetAdjacencyUser()` 453c1f0c11SLawrence Mitchell @*/ 463c1f0c11SLawrence Mitchell PetscErrorCode DMPlexGetAdjacencyUser(DM dm, PetscErrorCode (**user)(DM,PetscInt,PetscInt*,PetscInt[],void*), void **ctx) 473c1f0c11SLawrence Mitchell { 483c1f0c11SLawrence Mitchell DM_Plex *mesh = (DM_Plex *)dm->data; 493c1f0c11SLawrence Mitchell 503c1f0c11SLawrence Mitchell PetscFunctionBegin; 513c1f0c11SLawrence Mitchell PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 523c1f0c11SLawrence Mitchell if (user) *user = mesh->useradjacency; 533c1f0c11SLawrence Mitchell if (ctx) *ctx = mesh->useradjacencyctx; 543c1f0c11SLawrence Mitchell PetscFunctionReturn(0); 553c1f0c11SLawrence Mitchell } 563c1f0c11SLawrence Mitchell 5770034214SMatthew G. Knepley /*@ 58a17985deSToby Isaac DMPlexSetAdjacencyUseAnchors - Define adjacency in the mesh using the point-to-point constraints. 598b0b4c70SToby Isaac 608b0b4c70SToby Isaac Input Parameters: 618b0b4c70SToby Isaac + dm - The DM object 625b317d89SToby Isaac - useAnchors - Flag to use the constraints. If PETSC_TRUE, then constrained points are omitted from DMPlexGetAdjacency(), and their anchor points appear in their place. 638b0b4c70SToby Isaac 648b0b4c70SToby Isaac Level: intermediate 658b0b4c70SToby Isaac 66db781477SPatrick Sanan .seealso: `DMGetAdjacency()`, `DMSetAdjacency()`, `DMPlexDistribute()`, `DMPlexPreallocateOperator()`, `DMPlexSetAnchors()` 678b0b4c70SToby Isaac @*/ 685b317d89SToby Isaac PetscErrorCode DMPlexSetAdjacencyUseAnchors(DM dm, PetscBool useAnchors) 698b0b4c70SToby Isaac { 708b0b4c70SToby Isaac DM_Plex *mesh = (DM_Plex *) dm->data; 718b0b4c70SToby Isaac 728b0b4c70SToby Isaac PetscFunctionBegin; 738b0b4c70SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 745b317d89SToby Isaac mesh->useAnchors = useAnchors; 758b0b4c70SToby Isaac PetscFunctionReturn(0); 768b0b4c70SToby Isaac } 778b0b4c70SToby Isaac 788b0b4c70SToby Isaac /*@ 79a17985deSToby Isaac DMPlexGetAdjacencyUseAnchors - Query whether adjacency in the mesh uses the point-to-point constraints. 808b0b4c70SToby Isaac 818b0b4c70SToby Isaac Input Parameter: 828b0b4c70SToby Isaac . dm - The DM object 838b0b4c70SToby Isaac 848b0b4c70SToby Isaac Output Parameter: 855b317d89SToby Isaac . useAnchors - Flag to use the closure. If PETSC_TRUE, then constrained points are omitted from DMPlexGetAdjacency(), and their anchor points appear in their place. 868b0b4c70SToby Isaac 878b0b4c70SToby Isaac Level: intermediate 888b0b4c70SToby Isaac 89db781477SPatrick Sanan .seealso: `DMPlexSetAdjacencyUseAnchors()`, `DMSetAdjacency()`, `DMGetAdjacency()`, `DMPlexDistribute()`, `DMPlexPreallocateOperator()`, `DMPlexSetAnchors()` 908b0b4c70SToby Isaac @*/ 915b317d89SToby Isaac PetscErrorCode DMPlexGetAdjacencyUseAnchors(DM dm, PetscBool *useAnchors) 928b0b4c70SToby Isaac { 938b0b4c70SToby Isaac DM_Plex *mesh = (DM_Plex *) dm->data; 948b0b4c70SToby Isaac 958b0b4c70SToby Isaac PetscFunctionBegin; 968b0b4c70SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 97064a246eSJacob Faibussowitsch PetscValidBoolPointer(useAnchors, 2); 985b317d89SToby Isaac *useAnchors = mesh->useAnchors; 998b0b4c70SToby Isaac PetscFunctionReturn(0); 1008b0b4c70SToby Isaac } 1018b0b4c70SToby Isaac 10270034214SMatthew G. Knepley static PetscErrorCode DMPlexGetAdjacency_Cone_Internal(DM dm, PetscInt p, PetscInt *adjSize, PetscInt adj[]) 10370034214SMatthew G. Knepley { 10470034214SMatthew G. Knepley const PetscInt *cone = NULL; 10570034214SMatthew G. Knepley PetscInt numAdj = 0, maxAdjSize = *adjSize, coneSize, c; 10670034214SMatthew G. Knepley 10770034214SMatthew G. Knepley PetscFunctionBeginHot; 1089566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, p, &coneSize)); 1099566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(dm, p, &cone)); 1104b6b44bdSMatthew G. Knepley for (c = 0; c <= coneSize; ++c) { 1114b6b44bdSMatthew G. Knepley const PetscInt point = !c ? p : cone[c-1]; 11270034214SMatthew G. Knepley const PetscInt *support = NULL; 11370034214SMatthew G. Knepley PetscInt supportSize, s, q; 11470034214SMatthew G. Knepley 1159566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupportSize(dm, point, &supportSize)); 1169566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupport(dm, point, &support)); 11770034214SMatthew G. Knepley for (s = 0; s < supportSize; ++s) { 118527e7439SSatish Balay for (q = 0; q < numAdj || ((void)(adj[numAdj++] = support[s]),0); ++q) { 11970034214SMatthew G. Knepley if (support[s] == adj[q]) break; 12070034214SMatthew G. Knepley } 12163a3b9bcSJacob Faibussowitsch PetscCheck(numAdj <= maxAdjSize,PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid mesh exceeded adjacency allocation (%" PetscInt_FMT ")", maxAdjSize); 12270034214SMatthew G. Knepley } 12370034214SMatthew G. Knepley } 12470034214SMatthew G. Knepley *adjSize = numAdj; 12570034214SMatthew G. Knepley PetscFunctionReturn(0); 12670034214SMatthew G. Knepley } 12770034214SMatthew G. Knepley 12870034214SMatthew G. Knepley static PetscErrorCode DMPlexGetAdjacency_Support_Internal(DM dm, PetscInt p, PetscInt *adjSize, PetscInt adj[]) 12970034214SMatthew G. Knepley { 13070034214SMatthew G. Knepley const PetscInt *support = NULL; 13170034214SMatthew G. Knepley PetscInt numAdj = 0, maxAdjSize = *adjSize, supportSize, s; 13270034214SMatthew G. Knepley 13370034214SMatthew G. Knepley PetscFunctionBeginHot; 1349566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupportSize(dm, p, &supportSize)); 1359566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupport(dm, p, &support)); 1364b6b44bdSMatthew G. Knepley for (s = 0; s <= supportSize; ++s) { 1374b6b44bdSMatthew G. Knepley const PetscInt point = !s ? p : support[s-1]; 13870034214SMatthew G. Knepley const PetscInt *cone = NULL; 13970034214SMatthew G. Knepley PetscInt coneSize, c, q; 14070034214SMatthew G. Knepley 1419566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, point, &coneSize)); 1429566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(dm, point, &cone)); 14370034214SMatthew G. Knepley for (c = 0; c < coneSize; ++c) { 144527e7439SSatish Balay for (q = 0; q < numAdj || ((void)(adj[numAdj++] = cone[c]),0); ++q) { 14570034214SMatthew G. Knepley if (cone[c] == adj[q]) break; 14670034214SMatthew G. Knepley } 14763a3b9bcSJacob Faibussowitsch PetscCheck(numAdj <= maxAdjSize,PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid mesh exceeded adjacency allocation (%" PetscInt_FMT ")", maxAdjSize); 14870034214SMatthew G. Knepley } 14970034214SMatthew G. Knepley } 15070034214SMatthew G. Knepley *adjSize = numAdj; 15170034214SMatthew G. Knepley PetscFunctionReturn(0); 15270034214SMatthew G. Knepley } 15370034214SMatthew G. Knepley 15470034214SMatthew G. Knepley static PetscErrorCode DMPlexGetAdjacency_Transitive_Internal(DM dm, PetscInt p, PetscBool useClosure, PetscInt *adjSize, PetscInt adj[]) 15570034214SMatthew G. Knepley { 15670034214SMatthew G. Knepley PetscInt *star = NULL; 15770034214SMatthew G. Knepley PetscInt numAdj = 0, maxAdjSize = *adjSize, starSize, s; 15870034214SMatthew G. Knepley 15970034214SMatthew G. Knepley PetscFunctionBeginHot; 1609566063dSJacob Faibussowitsch PetscCall(DMPlexGetTransitiveClosure(dm, p, useClosure, &starSize, &star)); 16170034214SMatthew G. Knepley for (s = 0; s < starSize*2; s += 2) { 16270034214SMatthew G. Knepley const PetscInt *closure = NULL; 16370034214SMatthew G. Knepley PetscInt closureSize, c, q; 16470034214SMatthew G. Knepley 1659566063dSJacob Faibussowitsch PetscCall(DMPlexGetTransitiveClosure(dm, star[s], (PetscBool)!useClosure, &closureSize, (PetscInt**) &closure)); 16670034214SMatthew G. Knepley for (c = 0; c < closureSize*2; c += 2) { 167527e7439SSatish Balay for (q = 0; q < numAdj || ((void)(adj[numAdj++] = closure[c]),0); ++q) { 16870034214SMatthew G. Knepley if (closure[c] == adj[q]) break; 16970034214SMatthew G. Knepley } 17063a3b9bcSJacob Faibussowitsch PetscCheck(numAdj <= maxAdjSize,PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid mesh exceeded adjacency allocation (%" PetscInt_FMT ")", maxAdjSize); 17170034214SMatthew G. Knepley } 1729566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreTransitiveClosure(dm, star[s], (PetscBool)!useClosure, &closureSize, (PetscInt**) &closure)); 17370034214SMatthew G. Knepley } 1749566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreTransitiveClosure(dm, p, useClosure, &starSize, &star)); 17570034214SMatthew G. Knepley *adjSize = numAdj; 17670034214SMatthew G. Knepley PetscFunctionReturn(0); 17770034214SMatthew G. Knepley } 17870034214SMatthew G. Knepley 1795b317d89SToby Isaac PetscErrorCode DMPlexGetAdjacency_Internal(DM dm, PetscInt p, PetscBool useCone, PetscBool useTransitiveClosure, PetscBool useAnchors, PetscInt *adjSize, PetscInt *adj[]) 18070034214SMatthew G. Knepley { 18179bad331SMatthew G. Knepley static PetscInt asiz = 0; 1828b0b4c70SToby Isaac PetscInt maxAnchors = 1; 1838b0b4c70SToby Isaac PetscInt aStart = -1, aEnd = -1; 1848b0b4c70SToby Isaac PetscInt maxAdjSize; 1858b0b4c70SToby Isaac PetscSection aSec = NULL; 1868b0b4c70SToby Isaac IS aIS = NULL; 1878b0b4c70SToby Isaac const PetscInt *anchors; 1883c1f0c11SLawrence Mitchell DM_Plex *mesh = (DM_Plex *)dm->data; 18970034214SMatthew G. Knepley 19070034214SMatthew G. Knepley PetscFunctionBeginHot; 1915b317d89SToby Isaac if (useAnchors) { 1929566063dSJacob Faibussowitsch PetscCall(DMPlexGetAnchors(dm,&aSec,&aIS)); 1938b0b4c70SToby Isaac if (aSec) { 1949566063dSJacob Faibussowitsch PetscCall(PetscSectionGetMaxDof(aSec,&maxAnchors)); 19524c766afSToby Isaac maxAnchors = PetscMax(1,maxAnchors); 1969566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(aSec,&aStart,&aEnd)); 1979566063dSJacob Faibussowitsch PetscCall(ISGetIndices(aIS,&anchors)); 1988b0b4c70SToby Isaac } 1998b0b4c70SToby Isaac } 20079bad331SMatthew G. Knepley if (!*adj) { 20124c766afSToby Isaac PetscInt depth, coneSeries, supportSeries, maxC, maxS, pStart, pEnd; 20279bad331SMatthew G. Knepley 2039566063dSJacob Faibussowitsch PetscCall(DMPlexGetChart(dm, &pStart,&pEnd)); 2049566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepth(dm, &depth)); 205412e9a14SMatthew G. Knepley depth = PetscMax(depth, -depth); 2069566063dSJacob Faibussowitsch PetscCall(DMPlexGetMaxSizes(dm, &maxC, &maxS)); 20724c766afSToby Isaac coneSeries = (maxC > 1) ? ((PetscPowInt(maxC,depth+1)-1)/(maxC-1)) : depth+1; 20824c766afSToby Isaac supportSeries = (maxS > 1) ? ((PetscPowInt(maxS,depth+1)-1)/(maxS-1)) : depth+1; 20924c766afSToby Isaac asiz = PetscMax(PetscPowInt(maxS,depth)*coneSeries,PetscPowInt(maxC,depth)*supportSeries); 2108b0b4c70SToby Isaac asiz *= maxAnchors; 21124c766afSToby Isaac asiz = PetscMin(asiz,pEnd-pStart); 2129566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(asiz,adj)); 21379bad331SMatthew G. Knepley } 21479bad331SMatthew G. Knepley if (*adjSize < 0) *adjSize = asiz; 2158b0b4c70SToby Isaac maxAdjSize = *adjSize; 2163c1f0c11SLawrence Mitchell if (mesh->useradjacency) { 2179566063dSJacob Faibussowitsch PetscCall((*mesh->useradjacency)(dm, p, adjSize, *adj, mesh->useradjacencyctx)); 2183c1f0c11SLawrence Mitchell } else if (useTransitiveClosure) { 2199566063dSJacob Faibussowitsch PetscCall(DMPlexGetAdjacency_Transitive_Internal(dm, p, useCone, adjSize, *adj)); 22070034214SMatthew G. Knepley } else if (useCone) { 2219566063dSJacob Faibussowitsch PetscCall(DMPlexGetAdjacency_Cone_Internal(dm, p, adjSize, *adj)); 22270034214SMatthew G. Knepley } else { 2239566063dSJacob Faibussowitsch PetscCall(DMPlexGetAdjacency_Support_Internal(dm, p, adjSize, *adj)); 22470034214SMatthew G. Knepley } 2255b317d89SToby Isaac if (useAnchors && aSec) { 2268b0b4c70SToby Isaac PetscInt origSize = *adjSize; 2278b0b4c70SToby Isaac PetscInt numAdj = origSize; 2288b0b4c70SToby Isaac PetscInt i = 0, j; 2298b0b4c70SToby Isaac PetscInt *orig = *adj; 2308b0b4c70SToby Isaac 2318b0b4c70SToby Isaac while (i < origSize) { 2328b0b4c70SToby Isaac PetscInt p = orig[i]; 2338b0b4c70SToby Isaac PetscInt aDof = 0; 2348b0b4c70SToby Isaac 2358b0b4c70SToby Isaac if (p >= aStart && p < aEnd) { 2369566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(aSec,p,&aDof)); 2378b0b4c70SToby Isaac } 2388b0b4c70SToby Isaac if (aDof) { 2398b0b4c70SToby Isaac PetscInt aOff; 2408b0b4c70SToby Isaac PetscInt s, q; 2418b0b4c70SToby Isaac 2428b0b4c70SToby Isaac for (j = i + 1; j < numAdj; j++) { 2438b0b4c70SToby Isaac orig[j - 1] = orig[j]; 2448b0b4c70SToby Isaac } 2458b0b4c70SToby Isaac origSize--; 2468b0b4c70SToby Isaac numAdj--; 2479566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(aSec,p,&aOff)); 2488b0b4c70SToby Isaac for (s = 0; s < aDof; ++s) { 249527e7439SSatish Balay for (q = 0; q < numAdj || ((void)(orig[numAdj++] = anchors[aOff+s]),0); ++q) { 2508b0b4c70SToby Isaac if (anchors[aOff+s] == orig[q]) break; 2518b0b4c70SToby Isaac } 25263a3b9bcSJacob Faibussowitsch PetscCheck(numAdj <= maxAdjSize,PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid mesh exceeded adjacency allocation (%" PetscInt_FMT ")", maxAdjSize); 2538b0b4c70SToby Isaac } 2548b0b4c70SToby Isaac } 2558b0b4c70SToby Isaac else { 2568b0b4c70SToby Isaac i++; 2578b0b4c70SToby Isaac } 2588b0b4c70SToby Isaac } 2598b0b4c70SToby Isaac *adjSize = numAdj; 2609566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(aIS,&anchors)); 2618b0b4c70SToby Isaac } 26270034214SMatthew G. Knepley PetscFunctionReturn(0); 26370034214SMatthew G. Knepley } 26470034214SMatthew G. Knepley 26570034214SMatthew G. Knepley /*@ 26670034214SMatthew G. Knepley DMPlexGetAdjacency - Return all points adjacent to the given point 26770034214SMatthew G. Knepley 26870034214SMatthew G. Knepley Input Parameters: 26970034214SMatthew G. Knepley + dm - The DM object 2706b867d5aSJose E. Roman - p - The point 27170034214SMatthew G. Knepley 2726b867d5aSJose E. Roman Input/Output Parameters: 2736b867d5aSJose E. Roman + adjSize - The maximum size of adj if it is non-NULL, or PETSC_DETERMINE; 2746b867d5aSJose E. Roman on output the number of adjacent points 2756b867d5aSJose E. Roman - adj - Either NULL so that the array is allocated, or an existing array with size adjSize; 2766b867d5aSJose E. Roman on output contains the adjacent points 27770034214SMatthew G. Knepley 27870034214SMatthew G. Knepley Level: advanced 27970034214SMatthew G. Knepley 28095452b02SPatrick Sanan Notes: 28195452b02SPatrick Sanan The user must PetscFree the adj array if it was not passed in. 28270034214SMatthew G. Knepley 283db781477SPatrick Sanan .seealso: `DMSetAdjacency()`, `DMPlexDistribute()`, `DMCreateMatrix()`, `DMPlexPreallocateOperator()` 28470034214SMatthew G. Knepley @*/ 28570034214SMatthew G. Knepley PetscErrorCode DMPlexGetAdjacency(DM dm, PetscInt p, PetscInt *adjSize, PetscInt *adj[]) 28670034214SMatthew G. Knepley { 2871cf84007SMatthew G. Knepley PetscBool useCone, useClosure, useAnchors; 28870034214SMatthew G. Knepley 28970034214SMatthew G. Knepley PetscFunctionBeginHot; 29070034214SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 291dadcf809SJacob Faibussowitsch PetscValidIntPointer(adjSize,3); 29270034214SMatthew G. Knepley PetscValidPointer(adj,4); 2939566063dSJacob Faibussowitsch PetscCall(DMGetBasicAdjacency(dm, &useCone, &useClosure)); 2949566063dSJacob Faibussowitsch PetscCall(DMPlexGetAdjacencyUseAnchors(dm, &useAnchors)); 2959566063dSJacob Faibussowitsch PetscCall(DMPlexGetAdjacency_Internal(dm, p, useCone, useClosure, useAnchors, adjSize, adj)); 29670034214SMatthew G. Knepley PetscFunctionReturn(0); 29770034214SMatthew G. Knepley } 29808633170SToby Isaac 299b0a623aaSMatthew G. Knepley /*@ 300b0a623aaSMatthew G. Knepley DMPlexCreateTwoSidedProcessSF - Create an SF which just has process connectivity 301b0a623aaSMatthew G. Knepley 302d083f849SBarry Smith Collective on dm 303b0a623aaSMatthew G. Knepley 304b0a623aaSMatthew G. Knepley Input Parameters: 305b0a623aaSMatthew G. Knepley + dm - The DM 3066b867d5aSJose E. Roman . sfPoint - The PetscSF which encodes point connectivity 3076b867d5aSJose E. Roman . rootRankSection - 3086b867d5aSJose E. Roman . rootRanks - 3096b867d5aSJose E. Roman . leftRankSection - 3106b867d5aSJose E. Roman - leafRanks - 311b0a623aaSMatthew G. Knepley 312b0a623aaSMatthew G. Knepley Output Parameters: 313b0a623aaSMatthew G. Knepley + processRanks - A list of process neighbors, or NULL 314b0a623aaSMatthew G. Knepley - sfProcess - An SF encoding the two-sided process connectivity, or NULL 315b0a623aaSMatthew G. Knepley 316b0a623aaSMatthew G. Knepley Level: developer 317b0a623aaSMatthew G. Knepley 318db781477SPatrick Sanan .seealso: `PetscSFCreate()`, `DMPlexCreateProcessSF()` 319b0a623aaSMatthew G. Knepley @*/ 320b0a623aaSMatthew G. Knepley PetscErrorCode DMPlexCreateTwoSidedProcessSF(DM dm, PetscSF sfPoint, PetscSection rootRankSection, IS rootRanks, PetscSection leafRankSection, IS leafRanks, IS *processRanks, PetscSF *sfProcess) 321b0a623aaSMatthew G. Knepley { 322b0a623aaSMatthew G. Knepley const PetscSFNode *remotePoints; 323b0a623aaSMatthew G. Knepley PetscInt *localPointsNew; 324b0a623aaSMatthew G. Knepley PetscSFNode *remotePointsNew; 325b0a623aaSMatthew G. Knepley const PetscInt *nranks; 326b0a623aaSMatthew G. Knepley PetscInt *ranksNew; 327b0a623aaSMatthew G. Knepley PetscBT neighbors; 328b0a623aaSMatthew G. Knepley PetscInt pStart, pEnd, p, numLeaves, l, numNeighbors, n; 3299852e123SBarry Smith PetscMPIInt size, proc, rank; 330b0a623aaSMatthew G. Knepley 331b0a623aaSMatthew G. Knepley PetscFunctionBegin; 332b0a623aaSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 333b0a623aaSMatthew G. Knepley PetscValidHeaderSpecific(sfPoint, PETSCSF_CLASSID, 2); 334064a246eSJacob Faibussowitsch if (processRanks) {PetscValidPointer(processRanks, 7);} 335064a246eSJacob Faibussowitsch if (sfProcess) {PetscValidPointer(sfProcess, 8);} 3369566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject) dm), &size)); 3379566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject) dm), &rank)); 3389566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(sfPoint, NULL, &numLeaves, NULL, &remotePoints)); 3399566063dSJacob Faibussowitsch PetscCall(PetscBTCreate(size, &neighbors)); 3409566063dSJacob Faibussowitsch PetscCall(PetscBTMemzero(size, neighbors)); 341b0a623aaSMatthew G. Knepley /* Compute root-to-leaf process connectivity */ 3429566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(rootRankSection, &pStart, &pEnd)); 3439566063dSJacob Faibussowitsch PetscCall(ISGetIndices(rootRanks, &nranks)); 344b0a623aaSMatthew G. Knepley for (p = pStart; p < pEnd; ++p) { 345b0a623aaSMatthew G. Knepley PetscInt ndof, noff, n; 346b0a623aaSMatthew G. Knepley 3479566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(rootRankSection, p, &ndof)); 3489566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(rootRankSection, p, &noff)); 3499566063dSJacob Faibussowitsch for (n = 0; n < ndof; ++n) PetscCall(PetscBTSet(neighbors, nranks[noff+n])); 350b0a623aaSMatthew G. Knepley } 3519566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(rootRanks, &nranks)); 352b0a623aaSMatthew G. Knepley /* Compute leaf-to-neighbor process connectivity */ 3539566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(leafRankSection, &pStart, &pEnd)); 3549566063dSJacob Faibussowitsch PetscCall(ISGetIndices(leafRanks, &nranks)); 355b0a623aaSMatthew G. Knepley for (p = pStart; p < pEnd; ++p) { 356b0a623aaSMatthew G. Knepley PetscInt ndof, noff, n; 357b0a623aaSMatthew G. Knepley 3589566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(leafRankSection, p, &ndof)); 3599566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(leafRankSection, p, &noff)); 3609566063dSJacob Faibussowitsch for (n = 0; n < ndof; ++n) PetscCall(PetscBTSet(neighbors, nranks[noff+n])); 361b0a623aaSMatthew G. Knepley } 3629566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(leafRanks, &nranks)); 363b0a623aaSMatthew G. Knepley /* Compute leaf-to-root process connectivity */ 364b0a623aaSMatthew G. Knepley for (l = 0; l < numLeaves; ++l) {PetscBTSet(neighbors, remotePoints[l].rank);} 365b0a623aaSMatthew G. Knepley /* Calculate edges */ 366b0a623aaSMatthew G. Knepley PetscBTClear(neighbors, rank); 3679852e123SBarry Smith for (proc = 0, numNeighbors = 0; proc < size; ++proc) {if (PetscBTLookup(neighbors, proc)) ++numNeighbors;} 3689566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(numNeighbors, &ranksNew)); 3699566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(numNeighbors, &localPointsNew)); 3709566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(numNeighbors, &remotePointsNew)); 3719852e123SBarry Smith for (proc = 0, n = 0; proc < size; ++proc) { 372b0a623aaSMatthew G. Knepley if (PetscBTLookup(neighbors, proc)) { 373b0a623aaSMatthew G. Knepley ranksNew[n] = proc; 374b0a623aaSMatthew G. Knepley localPointsNew[n] = proc; 375b0a623aaSMatthew G. Knepley remotePointsNew[n].index = rank; 376b0a623aaSMatthew G. Knepley remotePointsNew[n].rank = proc; 377b0a623aaSMatthew G. Knepley ++n; 378b0a623aaSMatthew G. Knepley } 379b0a623aaSMatthew G. Knepley } 3809566063dSJacob Faibussowitsch PetscCall(PetscBTDestroy(&neighbors)); 3819566063dSJacob Faibussowitsch if (processRanks) PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)dm), numNeighbors, ranksNew, PETSC_OWN_POINTER, processRanks)); 3829566063dSJacob Faibussowitsch else PetscCall(PetscFree(ranksNew)); 383b0a623aaSMatthew G. Knepley if (sfProcess) { 3849566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)dm), sfProcess)); 3859566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject) *sfProcess, "Two-Sided Process SF")); 3869566063dSJacob Faibussowitsch PetscCall(PetscSFSetFromOptions(*sfProcess)); 3879566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(*sfProcess, size, numNeighbors, localPointsNew, PETSC_OWN_POINTER, remotePointsNew, PETSC_OWN_POINTER)); 388b0a623aaSMatthew G. Knepley } 389b0a623aaSMatthew G. Knepley PetscFunctionReturn(0); 390b0a623aaSMatthew G. Knepley } 391b0a623aaSMatthew G. Knepley 392b0a623aaSMatthew G. Knepley /*@ 393b0a623aaSMatthew G. Knepley DMPlexDistributeOwnership - Compute owner information for shared points. This basically gets two-sided for an SF. 394b0a623aaSMatthew G. Knepley 395d083f849SBarry Smith Collective on dm 396b0a623aaSMatthew G. Knepley 397b0a623aaSMatthew G. Knepley Input Parameter: 398b0a623aaSMatthew G. Knepley . dm - The DM 399b0a623aaSMatthew G. Knepley 400b0a623aaSMatthew G. Knepley Output Parameters: 401b0a623aaSMatthew G. Knepley + rootSection - The number of leaves for a given root point 402b0a623aaSMatthew G. Knepley . rootrank - The rank of each edge into the root point 403b0a623aaSMatthew G. Knepley . leafSection - The number of processes sharing a given leaf point 404b0a623aaSMatthew G. Knepley - leafrank - The rank of each process sharing a leaf point 405b0a623aaSMatthew G. Knepley 406b0a623aaSMatthew G. Knepley Level: developer 407b0a623aaSMatthew G. Knepley 408db781477SPatrick Sanan .seealso: `DMPlexCreateOverlapLabel()`, `DMPlexDistribute()`, `DMPlexDistributeOverlap()` 409b0a623aaSMatthew G. Knepley @*/ 410b0a623aaSMatthew G. Knepley PetscErrorCode DMPlexDistributeOwnership(DM dm, PetscSection rootSection, IS *rootrank, PetscSection leafSection, IS *leafrank) 411b0a623aaSMatthew G. Knepley { 412b0a623aaSMatthew G. Knepley MPI_Comm comm; 413b0a623aaSMatthew G. Knepley PetscSF sfPoint; 414b0a623aaSMatthew G. Knepley const PetscInt *rootdegree; 415b0a623aaSMatthew G. Knepley PetscInt *myrank, *remoterank; 416b0a623aaSMatthew G. Knepley PetscInt pStart, pEnd, p, nedges; 417b0a623aaSMatthew G. Knepley PetscMPIInt rank; 418b0a623aaSMatthew G. Knepley 419b0a623aaSMatthew G. Knepley PetscFunctionBegin; 4209566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject) dm, &comm)); 4219566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 4229566063dSJacob Faibussowitsch PetscCall(DMPlexGetChart(dm, &pStart, &pEnd)); 4239566063dSJacob Faibussowitsch PetscCall(DMGetPointSF(dm, &sfPoint)); 424b0a623aaSMatthew G. Knepley /* Compute number of leaves for each root */ 4259566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject) rootSection, "Root Section")); 4269566063dSJacob Faibussowitsch PetscCall(PetscSectionSetChart(rootSection, pStart, pEnd)); 4279566063dSJacob Faibussowitsch PetscCall(PetscSFComputeDegreeBegin(sfPoint, &rootdegree)); 4289566063dSJacob Faibussowitsch PetscCall(PetscSFComputeDegreeEnd(sfPoint, &rootdegree)); 4299566063dSJacob Faibussowitsch for (p = pStart; p < pEnd; ++p) PetscCall(PetscSectionSetDof(rootSection, p, rootdegree[p-pStart])); 4309566063dSJacob Faibussowitsch PetscCall(PetscSectionSetUp(rootSection)); 431b0a623aaSMatthew G. Knepley /* Gather rank of each leaf to root */ 4329566063dSJacob Faibussowitsch PetscCall(PetscSectionGetStorageSize(rootSection, &nedges)); 4339566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(pEnd-pStart, &myrank)); 4349566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nedges, &remoterank)); 435b0a623aaSMatthew G. Knepley for (p = 0; p < pEnd-pStart; ++p) myrank[p] = rank; 4369566063dSJacob Faibussowitsch PetscCall(PetscSFGatherBegin(sfPoint, MPIU_INT, myrank, remoterank)); 4379566063dSJacob Faibussowitsch PetscCall(PetscSFGatherEnd(sfPoint, MPIU_INT, myrank, remoterank)); 4389566063dSJacob Faibussowitsch PetscCall(PetscFree(myrank)); 4399566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(comm, nedges, remoterank, PETSC_OWN_POINTER, rootrank)); 440b0a623aaSMatthew G. Knepley /* Distribute remote ranks to leaves */ 4419566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject) leafSection, "Leaf Section")); 4429566063dSJacob Faibussowitsch PetscCall(DMPlexDistributeFieldIS(dm, sfPoint, rootSection, *rootrank, leafSection, leafrank)); 443b0a623aaSMatthew G. Knepley PetscFunctionReturn(0); 444b0a623aaSMatthew G. Knepley } 445b0a623aaSMatthew G. Knepley 446c506a872SMatthew G. Knepley #if 0 447c506a872SMatthew G. Knepley static PetscErrorCode DMPlexCopyOverlapLabels(DM dm, DM ndm) 448c506a872SMatthew G. Knepley { 449c506a872SMatthew G. Knepley DM_Plex *mesh = (DM_Plex *) dm->data; 450c506a872SMatthew G. Knepley DM_Plex *nmesh = (DM_Plex *) ndm->data; 451c506a872SMatthew G. Knepley 452c506a872SMatthew G. Knepley PetscFunctionBegin; 453c506a872SMatthew G. Knepley if (mesh->numOvLabels) { 454c506a872SMatthew G. Knepley const char *name; 455c506a872SMatthew G. Knepley PetscInt l; 456c506a872SMatthew G. Knepley 457c506a872SMatthew G. Knepley nmesh->numOvLabels = mesh->numOvLabels; 458c506a872SMatthew G. Knepley for (l = 0; l < mesh->numOvLabels; ++l) { 459c506a872SMatthew G. Knepley PetscCall(PetscObjectGetName((PetscObject) mesh->ovLabels[l], &name)); 460c506a872SMatthew G. Knepley PetscCall(DMGetLabel(ndm, name, &nmesh->ovLabels[l])); 461c506a872SMatthew G. Knepley nmesh->ovValues[l] = mesh->ovValues[l]; 462c506a872SMatthew G. Knepley } 463c506a872SMatthew G. Knepley PetscCall(PetscObjectGetName((PetscObject) mesh->ovExLabel, &name)); 464c506a872SMatthew G. Knepley PetscCall(DMGetLabel(ndm, name, &nmesh->ovExLabel)); 465c506a872SMatthew G. Knepley nmesh->ovExValue = mesh->ovExValue; 466c506a872SMatthew G. Knepley } 467c506a872SMatthew G. Knepley PetscFunctionReturn(0); 468c506a872SMatthew G. Knepley } 469c506a872SMatthew G. Knepley #endif 470c506a872SMatthew G. Knepley 471278397a0SMatthew G. Knepley /*@C 472c506a872SMatthew G. Knepley DMPlexCreateOverlapLabel - Compute a label indicating what overlap points should be sent to new processes 473b0a623aaSMatthew G. Knepley 474d083f849SBarry Smith Collective on dm 475b0a623aaSMatthew G. Knepley 476b0a623aaSMatthew G. Knepley Input Parameters: 477b0a623aaSMatthew G. Knepley + dm - The DM 47824d039d7SMichael Lange . levels - Number of overlap levels 479b0a623aaSMatthew G. Knepley . rootSection - The number of leaves for a given root point 480b0a623aaSMatthew G. Knepley . rootrank - The rank of each edge into the root point 481b0a623aaSMatthew G. Knepley . leafSection - The number of processes sharing a given leaf point 482b0a623aaSMatthew G. Knepley - leafrank - The rank of each process sharing a leaf point 483b0a623aaSMatthew G. Knepley 484064ec1f3Sprj- Output Parameter: 485b4ec6ac8SBarry Smith . ovLabel - DMLabel containing remote overlap contributions as point/rank pairings 486b0a623aaSMatthew G. Knepley 487b0a623aaSMatthew G. Knepley Level: developer 488b0a623aaSMatthew G. Knepley 489c506a872SMatthew G. Knepley .seealso: `DMPlexCreateOverlapLabelFromLabels()`, `DMPlexGetAdjacency()`, `DMPlexDistributeOwnership()`, `DMPlexDistribute()` 490b0a623aaSMatthew G. Knepley @*/ 491dccdeccaSVaclav Hapla PetscErrorCode DMPlexCreateOverlapLabel(DM dm, PetscInt levels, PetscSection rootSection, IS rootrank, PetscSection leafSection, IS leafrank, DMLabel *ovLabel) 492b0a623aaSMatthew G. Knepley { 493e540f424SMichael Lange MPI_Comm comm; 494b0a623aaSMatthew G. Knepley DMLabel ovAdjByRank; /* A DMLabel containing all points adjacent to shared points, separated by rank (value in label) */ 495874ddda9SLisandro Dalcin PetscSF sfPoint; 496b0a623aaSMatthew G. Knepley const PetscSFNode *remote; 497b0a623aaSMatthew G. Knepley const PetscInt *local; 4981fd9873aSMichael Lange const PetscInt *nrank, *rrank; 499b0a623aaSMatthew G. Knepley PetscInt *adj = NULL; 5001fd9873aSMichael Lange PetscInt pStart, pEnd, p, sStart, sEnd, nleaves, l; 5019852e123SBarry Smith PetscMPIInt rank, size; 50231bc6364SLisandro Dalcin PetscBool flg; 503b0a623aaSMatthew G. Knepley 504b0a623aaSMatthew G. Knepley PetscFunctionBegin; 5056ba1a4c7SVaclav Hapla *ovLabel = NULL; 5069566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject) dm, &comm)); 5079566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 5089566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 5096ba1a4c7SVaclav Hapla if (size == 1) PetscFunctionReturn(0); 5109566063dSJacob Faibussowitsch PetscCall(DMGetPointSF(dm, &sfPoint)); 5119566063dSJacob Faibussowitsch PetscCall(DMPlexGetChart(dm, &pStart, &pEnd)); 512d1674c6dSMatthew Knepley if (!levels) { 513d1674c6dSMatthew Knepley /* Add owned points */ 5149566063dSJacob Faibussowitsch PetscCall(DMLabelCreate(PETSC_COMM_SELF, "Overlap label", ovLabel)); 5159566063dSJacob Faibussowitsch for (p = pStart; p < pEnd; ++p) PetscCall(DMLabelSetValue(*ovLabel, p, rank)); 516d1674c6dSMatthew Knepley PetscFunctionReturn(0); 517d1674c6dSMatthew Knepley } 5189566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(leafSection, &sStart, &sEnd)); 5199566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(sfPoint, NULL, &nleaves, &local, &remote)); 5209566063dSJacob Faibussowitsch PetscCall(DMLabelCreate(PETSC_COMM_SELF, "Overlap adjacency", &ovAdjByRank)); 521b0a623aaSMatthew G. Knepley /* Handle leaves: shared with the root point */ 522b0a623aaSMatthew G. Knepley for (l = 0; l < nleaves; ++l) { 523b0a623aaSMatthew G. Knepley PetscInt adjSize = PETSC_DETERMINE, a; 524b0a623aaSMatthew G. Knepley 5259566063dSJacob Faibussowitsch PetscCall(DMPlexGetAdjacency(dm, local ? local[l] : l, &adjSize, &adj)); 5269566063dSJacob Faibussowitsch for (a = 0; a < adjSize; ++a) PetscCall(DMLabelSetValue(ovAdjByRank, adj[a], remote[l].rank)); 527b0a623aaSMatthew G. Knepley } 5289566063dSJacob Faibussowitsch PetscCall(ISGetIndices(rootrank, &rrank)); 5299566063dSJacob Faibussowitsch PetscCall(ISGetIndices(leafrank, &nrank)); 530b0a623aaSMatthew G. Knepley /* Handle roots */ 531b0a623aaSMatthew G. Knepley for (p = pStart; p < pEnd; ++p) { 532b0a623aaSMatthew G. Knepley PetscInt adjSize = PETSC_DETERMINE, neighbors = 0, noff, n, a; 533b0a623aaSMatthew G. Knepley 534b0a623aaSMatthew G. Knepley if ((p >= sStart) && (p < sEnd)) { 535b0a623aaSMatthew G. Knepley /* Some leaves share a root with other leaves on different processes */ 5369566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(leafSection, p, &neighbors)); 537b0a623aaSMatthew G. Knepley if (neighbors) { 5389566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(leafSection, p, &noff)); 5399566063dSJacob Faibussowitsch PetscCall(DMPlexGetAdjacency(dm, p, &adjSize, &adj)); 540b0a623aaSMatthew G. Knepley for (n = 0; n < neighbors; ++n) { 541b0a623aaSMatthew G. Knepley const PetscInt remoteRank = nrank[noff+n]; 542b0a623aaSMatthew G. Knepley 543b0a623aaSMatthew G. Knepley if (remoteRank == rank) continue; 5449566063dSJacob Faibussowitsch for (a = 0; a < adjSize; ++a) PetscCall(DMLabelSetValue(ovAdjByRank, adj[a], remoteRank)); 545b0a623aaSMatthew G. Knepley } 546b0a623aaSMatthew G. Knepley } 547b0a623aaSMatthew G. Knepley } 548b0a623aaSMatthew G. Knepley /* Roots are shared with leaves */ 5499566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(rootSection, p, &neighbors)); 550b0a623aaSMatthew G. Knepley if (!neighbors) continue; 5519566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(rootSection, p, &noff)); 5529566063dSJacob Faibussowitsch PetscCall(DMPlexGetAdjacency(dm, p, &adjSize, &adj)); 553b0a623aaSMatthew G. Knepley for (n = 0; n < neighbors; ++n) { 554b0a623aaSMatthew G. Knepley const PetscInt remoteRank = rrank[noff+n]; 555b0a623aaSMatthew G. Knepley 556b0a623aaSMatthew G. Knepley if (remoteRank == rank) continue; 5579566063dSJacob Faibussowitsch for (a = 0; a < adjSize; ++a) PetscCall(DMLabelSetValue(ovAdjByRank, adj[a], remoteRank)); 558b0a623aaSMatthew G. Knepley } 559b0a623aaSMatthew G. Knepley } 5609566063dSJacob Faibussowitsch PetscCall(PetscFree(adj)); 5619566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(rootrank, &rrank)); 5629566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(leafrank, &nrank)); 56324d039d7SMichael Lange /* Add additional overlap levels */ 564be200f8dSMichael Lange for (l = 1; l < levels; l++) { 565be200f8dSMichael Lange /* Propagate point donations over SF to capture remote connections */ 5669566063dSJacob Faibussowitsch PetscCall(DMPlexPartitionLabelPropagate(dm, ovAdjByRank)); 567be200f8dSMichael Lange /* Add next level of point donations to the label */ 5689566063dSJacob Faibussowitsch PetscCall(DMPlexPartitionLabelAdjacency(dm, ovAdjByRank)); 569be200f8dSMichael Lange } 57026a7d390SMatthew G. Knepley /* We require the closure in the overlap */ 5719566063dSJacob Faibussowitsch PetscCall(DMPlexPartitionLabelClosure(dm, ovAdjByRank)); 5729566063dSJacob Faibussowitsch PetscCall(PetscOptionsHasName(((PetscObject) dm)->options,((PetscObject) dm)->prefix, "-overlap_view", &flg)); 573e540f424SMichael Lange if (flg) { 574825f8a23SLisandro Dalcin PetscViewer viewer; 5759566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIGetStdout(PetscObjectComm((PetscObject)dm), &viewer)); 5769566063dSJacob Faibussowitsch PetscCall(DMLabelView(ovAdjByRank, viewer)); 577b0a623aaSMatthew G. Knepley } 578874ddda9SLisandro Dalcin /* Invert sender to receiver label */ 5799566063dSJacob Faibussowitsch PetscCall(DMLabelCreate(PETSC_COMM_SELF, "Overlap label", ovLabel)); 5809566063dSJacob Faibussowitsch PetscCall(DMPlexPartitionLabelInvert(dm, ovAdjByRank, NULL, *ovLabel)); 581a9f1d5b2SMichael Lange /* Add owned points, except for shared local points */ 5829566063dSJacob Faibussowitsch for (p = pStart; p < pEnd; ++p) PetscCall(DMLabelSetValue(*ovLabel, p, rank)); 583e540f424SMichael Lange for (l = 0; l < nleaves; ++l) { 5849566063dSJacob Faibussowitsch PetscCall(DMLabelClearValue(*ovLabel, local[l], rank)); 5859566063dSJacob Faibussowitsch PetscCall(DMLabelSetValue(*ovLabel, remote[l].index, remote[l].rank)); 586e540f424SMichael Lange } 587e540f424SMichael Lange /* Clean up */ 5889566063dSJacob Faibussowitsch PetscCall(DMLabelDestroy(&ovAdjByRank)); 589b0a623aaSMatthew G. Knepley PetscFunctionReturn(0); 590b0a623aaSMatthew G. Knepley } 59170034214SMatthew G. Knepley 592c506a872SMatthew G. Knepley static PetscErrorCode HandlePoint_Private(DM dm, PetscInt p, PetscSection section, const PetscInt ranks[], PetscInt numExLabels, const DMLabel exLabel[], const PetscInt exValue[], DMLabel ovAdjByRank) 593c506a872SMatthew G. Knepley { 594c506a872SMatthew G. Knepley PetscInt neighbors, el; 595c506a872SMatthew G. Knepley 596c506a872SMatthew G. Knepley PetscFunctionBegin; 597c506a872SMatthew G. Knepley PetscCall(PetscSectionGetDof(section, p, &neighbors)); 598c506a872SMatthew G. Knepley if (neighbors) { 599c506a872SMatthew G. Knepley PetscInt *adj = NULL; 600c506a872SMatthew G. Knepley PetscInt adjSize = PETSC_DETERMINE, noff, n, a; 601c506a872SMatthew G. Knepley PetscMPIInt rank; 602c506a872SMatthew G. Knepley 603c506a872SMatthew G. Knepley PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject) dm), &rank)); 604c506a872SMatthew G. Knepley PetscCall(PetscSectionGetOffset(section, p, &noff)); 605c506a872SMatthew G. Knepley PetscCall(DMPlexGetAdjacency(dm, p, &adjSize, &adj)); 606c506a872SMatthew G. Knepley for (n = 0; n < neighbors; ++n) { 607c506a872SMatthew G. Knepley const PetscInt remoteRank = ranks[noff+n]; 608c506a872SMatthew G. Knepley 609c506a872SMatthew G. Knepley if (remoteRank == rank) continue; 610c506a872SMatthew G. Knepley for (a = 0; a < adjSize; ++a) { 611c506a872SMatthew G. Knepley PetscBool insert = PETSC_TRUE; 612c506a872SMatthew G. Knepley 613c506a872SMatthew G. Knepley for (el = 0; el < numExLabels; ++el) { 614c506a872SMatthew G. Knepley PetscInt exVal; 615c506a872SMatthew G. Knepley PetscCall(DMLabelGetValue(exLabel[el], adj[a], &exVal)); 616c506a872SMatthew G. Knepley if (exVal == exValue[el]) {insert = PETSC_FALSE; break;} 617c506a872SMatthew G. Knepley } 618c506a872SMatthew G. Knepley if (insert) PetscCall(DMLabelSetValue(ovAdjByRank, adj[a], remoteRank)); 619c506a872SMatthew G. Knepley } 620c506a872SMatthew G. Knepley } 621c506a872SMatthew G. Knepley } 622c506a872SMatthew G. Knepley PetscFunctionReturn(0); 623c506a872SMatthew G. Knepley } 624c506a872SMatthew G. Knepley 625c506a872SMatthew G. Knepley /*@C 626c506a872SMatthew G. Knepley DMPlexCreateOverlapLabelFromLabels - Compute a label indicating what overlap points should be sent to new processes 627c506a872SMatthew G. Knepley 628c506a872SMatthew G. Knepley Collective on dm 629c506a872SMatthew G. Knepley 630c506a872SMatthew G. Knepley Input Parameters: 631c506a872SMatthew G. Knepley + dm - The DM 632c506a872SMatthew G. Knepley . numLabels - The number of labels to draw candidate points from 633c506a872SMatthew G. Knepley . label - An array of labels containing candidate points 634c506a872SMatthew G. Knepley . value - An array of label values marking the candidate points 635c506a872SMatthew G. Knepley . numExLabels - The number of labels to use for exclusion 636c506a872SMatthew G. Knepley . exLabel - An array of labels indicating points to be excluded, or NULL 637c506a872SMatthew G. Knepley . exValue - An array of label values to be excluded, or NULL 638c506a872SMatthew G. Knepley . rootSection - The number of leaves for a given root point 639c506a872SMatthew G. Knepley . rootrank - The rank of each edge into the root point 640c506a872SMatthew G. Knepley . leafSection - The number of processes sharing a given leaf point 641c506a872SMatthew G. Knepley - leafrank - The rank of each process sharing a leaf point 642c506a872SMatthew G. Knepley 643c506a872SMatthew G. Knepley Output Parameter: 644c506a872SMatthew G. Knepley . ovLabel - DMLabel containing remote overlap contributions as point/rank pairings 645c506a872SMatthew G. Knepley 646c506a872SMatthew G. Knepley Note: 647c506a872SMatthew G. Knepley The candidate points are only added to the overlap if they are adjacent to a shared point 648c506a872SMatthew G. Knepley 649c506a872SMatthew G. Knepley Level: developer 650c506a872SMatthew G. Knepley 651c506a872SMatthew G. Knepley .seealso: `DMPlexCreateOverlapLabel()`, `DMPlexGetAdjacency()`, `DMPlexDistributeOwnership()`, `DMPlexDistribute()` 652c506a872SMatthew G. Knepley @*/ 653c506a872SMatthew G. Knepley PetscErrorCode DMPlexCreateOverlapLabelFromLabels(DM dm, PetscInt numLabels, const DMLabel label[], const PetscInt value[], 654c506a872SMatthew G. Knepley PetscInt numExLabels, const DMLabel exLabel[], const PetscInt exValue[], PetscSection rootSection, IS rootrank, PetscSection leafSection, IS leafrank, DMLabel *ovLabel) 655c506a872SMatthew G. Knepley { 656c506a872SMatthew G. Knepley MPI_Comm comm; 657c506a872SMatthew G. Knepley DMLabel ovAdjByRank; /* A DMLabel containing all points adjacent to shared points, separated by rank (value in label) */ 658c506a872SMatthew G. Knepley PetscSF sfPoint; 659c506a872SMatthew G. Knepley const PetscSFNode *remote; 660c506a872SMatthew G. Knepley const PetscInt *local; 661c506a872SMatthew G. Knepley const PetscInt *nrank, *rrank; 662c506a872SMatthew G. Knepley PetscInt *adj = NULL; 663c506a872SMatthew G. Knepley PetscInt pStart, pEnd, p, sStart, sEnd, nleaves, l, el; 664c506a872SMatthew G. Knepley PetscMPIInt rank, size; 665c506a872SMatthew G. Knepley PetscBool flg; 666c506a872SMatthew G. Knepley 667c506a872SMatthew G. Knepley PetscFunctionBegin; 668c506a872SMatthew G. Knepley *ovLabel = NULL; 669c506a872SMatthew G. Knepley PetscCall(PetscObjectGetComm((PetscObject) dm, &comm)); 670c506a872SMatthew G. Knepley PetscCallMPI(MPI_Comm_size(comm, &size)); 671c506a872SMatthew G. Knepley PetscCallMPI(MPI_Comm_rank(comm, &rank)); 672c506a872SMatthew G. Knepley if (size == 1) PetscFunctionReturn(0); 673c506a872SMatthew G. Knepley PetscCall(DMGetPointSF(dm, &sfPoint)); 674c506a872SMatthew G. Knepley PetscCall(DMPlexGetChart(dm, &pStart, &pEnd)); 675c506a872SMatthew G. Knepley PetscCall(PetscSectionGetChart(leafSection, &sStart, &sEnd)); 676c506a872SMatthew G. Knepley PetscCall(PetscSFGetGraph(sfPoint, NULL, &nleaves, &local, &remote)); 677c506a872SMatthew G. Knepley PetscCall(DMLabelCreate(PETSC_COMM_SELF, "Overlap adjacency", &ovAdjByRank)); 678c506a872SMatthew G. Knepley PetscCall(ISGetIndices(rootrank, &rrank)); 679c506a872SMatthew G. Knepley PetscCall(ISGetIndices(leafrank, &nrank)); 680c506a872SMatthew G. Knepley for (l = 0; l < numLabels; ++l) { 681c506a872SMatthew G. Knepley IS valIS; 682c506a872SMatthew G. Knepley const PetscInt *points; 683c506a872SMatthew G. Knepley PetscInt n; 684c506a872SMatthew G. Knepley 685c506a872SMatthew G. Knepley PetscCall(DMLabelGetStratumIS(label[l], value[l], &valIS)); 686c506a872SMatthew G. Knepley if (!valIS) continue; 687c506a872SMatthew G. Knepley PetscCall(ISGetIndices(valIS, &points)); 688c506a872SMatthew G. Knepley PetscCall(ISGetLocalSize(valIS, &n)); 689c506a872SMatthew G. Knepley for (PetscInt i = 0; i < n; ++i) { 690c506a872SMatthew G. Knepley const PetscInt p = points[i]; 691c506a872SMatthew G. Knepley 692c506a872SMatthew G. Knepley if ((p >= sStart) && (p < sEnd)) { 693c506a872SMatthew G. Knepley PetscInt loc, adjSize = PETSC_DETERMINE; 694c506a872SMatthew G. Knepley 695c506a872SMatthew G. Knepley /* Handle leaves: shared with the root point */ 696c506a872SMatthew G. Knepley if (local) PetscCall(PetscFindInt(p, nleaves, local, &loc)); 697c506a872SMatthew G. Knepley else loc = (p >= 0 && p < nleaves) ? p : -1; 698c506a872SMatthew G. Knepley if (loc >= 0) { 699c506a872SMatthew G. Knepley const PetscInt remoteRank = remote[loc].rank; 700c506a872SMatthew G. Knepley 701c506a872SMatthew G. Knepley PetscCall(DMPlexGetAdjacency(dm, p, &adjSize, &adj)); 702c506a872SMatthew G. Knepley for (PetscInt a = 0; a < adjSize; ++a) { 703c506a872SMatthew G. Knepley PetscBool insert = PETSC_TRUE; 704c506a872SMatthew G. Knepley 705c506a872SMatthew G. Knepley for (el = 0; el < numExLabels; ++el) { 706c506a872SMatthew G. Knepley PetscInt exVal; 707c506a872SMatthew G. Knepley PetscCall(DMLabelGetValue(exLabel[el], adj[a], &exVal)); 708c506a872SMatthew G. Knepley if (exVal == exValue[el]) {insert = PETSC_FALSE; break;} 709c506a872SMatthew G. Knepley } 710c506a872SMatthew G. Knepley if (insert) PetscCall(DMLabelSetValue(ovAdjByRank, adj[a], remoteRank)); 711c506a872SMatthew G. Knepley } 712c506a872SMatthew G. Knepley } 713c506a872SMatthew G. Knepley /* Some leaves share a root with other leaves on different processes */ 714c506a872SMatthew G. Knepley HandlePoint_Private(dm, p, leafSection, nrank, numExLabels, exLabel, exValue, ovAdjByRank); 715c506a872SMatthew G. Knepley } 716c506a872SMatthew G. Knepley /* Roots are shared with leaves */ 717c506a872SMatthew G. Knepley HandlePoint_Private(dm, p, rootSection, rrank, numExLabels, exLabel, exValue, ovAdjByRank); 718c506a872SMatthew G. Knepley } 719c506a872SMatthew G. Knepley PetscCall(ISRestoreIndices(valIS, &points)); 720c506a872SMatthew G. Knepley PetscCall(ISDestroy(&valIS)); 721c506a872SMatthew G. Knepley } 722c506a872SMatthew G. Knepley PetscCall(PetscFree(adj)); 723c506a872SMatthew G. Knepley PetscCall(ISRestoreIndices(rootrank, &rrank)); 724c506a872SMatthew G. Knepley PetscCall(ISRestoreIndices(leafrank, &nrank)); 725c506a872SMatthew G. Knepley /* We require the closure in the overlap */ 726c506a872SMatthew G. Knepley PetscCall(DMPlexPartitionLabelClosure(dm, ovAdjByRank)); 727c506a872SMatthew G. Knepley PetscCall(PetscOptionsHasName(((PetscObject) dm)->options,((PetscObject) dm)->prefix, "-overlap_view", &flg)); 728c506a872SMatthew G. Knepley if (flg) { 729c506a872SMatthew G. Knepley PetscViewer viewer; 730c506a872SMatthew G. Knepley PetscCall(PetscViewerASCIIGetStdout(PetscObjectComm((PetscObject)dm), &viewer)); 731c506a872SMatthew G. Knepley PetscCall(DMLabelView(ovAdjByRank, viewer)); 732c506a872SMatthew G. Knepley } 733c506a872SMatthew G. Knepley /* Invert sender to receiver label */ 734c506a872SMatthew G. Knepley PetscCall(DMLabelCreate(PETSC_COMM_SELF, "Overlap label", ovLabel)); 735c506a872SMatthew G. Knepley PetscCall(DMPlexPartitionLabelInvert(dm, ovAdjByRank, NULL, *ovLabel)); 736c506a872SMatthew G. Knepley /* Add owned points, except for shared local points */ 737c506a872SMatthew G. Knepley for (p = pStart; p < pEnd; ++p) PetscCall(DMLabelSetValue(*ovLabel, p, rank)); 738c506a872SMatthew G. Knepley for (l = 0; l < nleaves; ++l) { 739c506a872SMatthew G. Knepley PetscCall(DMLabelClearValue(*ovLabel, local[l], rank)); 740c506a872SMatthew G. Knepley PetscCall(DMLabelSetValue(*ovLabel, remote[l].index, remote[l].rank)); 741c506a872SMatthew G. Knepley } 742c506a872SMatthew G. Knepley /* Clean up */ 743c506a872SMatthew G. Knepley PetscCall(DMLabelDestroy(&ovAdjByRank)); 744c506a872SMatthew G. Knepley PetscFunctionReturn(0); 745c506a872SMatthew G. Knepley } 746c506a872SMatthew G. Knepley 74724cc2ca5SMatthew G. Knepley /*@C 74824cc2ca5SMatthew G. Knepley DMPlexCreateOverlapMigrationSF - Create an SF describing the new mesh distribution to make the overlap described by the input SF 74924cc2ca5SMatthew G. Knepley 750d083f849SBarry Smith Collective on dm 75124cc2ca5SMatthew G. Knepley 75224cc2ca5SMatthew G. Knepley Input Parameters: 75324cc2ca5SMatthew G. Knepley + dm - The DM 75424cc2ca5SMatthew G. Knepley - overlapSF - The SF mapping ghost points in overlap to owner points on other processes 75524cc2ca5SMatthew G. Knepley 756064ec1f3Sprj- Output Parameter: 757a2b725a8SWilliam Gropp . migrationSF - An SF that maps original points in old locations to points in new locations 75824cc2ca5SMatthew G. Knepley 75924cc2ca5SMatthew G. Knepley Level: developer 76024cc2ca5SMatthew G. Knepley 761db781477SPatrick Sanan .seealso: `DMPlexCreateOverlapLabel()`, `DMPlexDistributeOverlap()`, `DMPlexDistribute()` 76224cc2ca5SMatthew G. Knepley @*/ 76346f9b1c3SMichael Lange PetscErrorCode DMPlexCreateOverlapMigrationSF(DM dm, PetscSF overlapSF, PetscSF *migrationSF) 76446f9b1c3SMichael Lange { 76546f9b1c3SMichael Lange MPI_Comm comm; 7669852e123SBarry Smith PetscMPIInt rank, size; 76746f9b1c3SMichael Lange PetscInt d, dim, p, pStart, pEnd, nroots, nleaves, newLeaves, point, numSharedPoints; 76846f9b1c3SMichael Lange PetscInt *pointDepths, *remoteDepths, *ilocal; 76946f9b1c3SMichael Lange PetscInt *depthRecv, *depthShift, *depthIdx; 77046f9b1c3SMichael Lange PetscSFNode *iremote; 77146f9b1c3SMichael Lange PetscSF pointSF; 77246f9b1c3SMichael Lange const PetscInt *sharedLocal; 77346f9b1c3SMichael Lange const PetscSFNode *overlapRemote, *sharedRemote; 77446f9b1c3SMichael Lange 77546f9b1c3SMichael Lange PetscFunctionBegin; 77646f9b1c3SMichael Lange PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 7779566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)dm, &comm)); 7789566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 7799566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 7809566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 78146f9b1c3SMichael Lange 78246f9b1c3SMichael Lange /* Before building the migration SF we need to know the new stratum offsets */ 7839566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(overlapSF, &nroots, &nleaves, NULL, &overlapRemote)); 7849566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(nroots, &pointDepths, nleaves, &remoteDepths)); 78546f9b1c3SMichael Lange for (d=0; d<dim+1; d++) { 7869566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthStratum(dm, d, &pStart, &pEnd)); 78746f9b1c3SMichael Lange for (p=pStart; p<pEnd; p++) pointDepths[p] = d; 78846f9b1c3SMichael Lange } 78946f9b1c3SMichael Lange for (p=0; p<nleaves; p++) remoteDepths[p] = -1; 7909566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(overlapSF, MPIU_INT, pointDepths, remoteDepths,MPI_REPLACE)); 7919566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(overlapSF, MPIU_INT, pointDepths, remoteDepths,MPI_REPLACE)); 79246f9b1c3SMichael Lange 7932d4ee042Sprj- /* Count received points in each stratum and compute the internal strata shift */ 7949566063dSJacob Faibussowitsch PetscCall(PetscMalloc3(dim+1, &depthRecv, dim+1, &depthShift, dim+1, &depthIdx)); 79546f9b1c3SMichael Lange for (d=0; d<dim+1; d++) depthRecv[d]=0; 79646f9b1c3SMichael Lange for (p=0; p<nleaves; p++) depthRecv[remoteDepths[p]]++; 79746f9b1c3SMichael Lange depthShift[dim] = 0; 79846f9b1c3SMichael Lange for (d=0; d<dim; d++) depthShift[d] = depthRecv[dim]; 79946f9b1c3SMichael Lange for (d=1; d<dim; d++) depthShift[d] += depthRecv[0]; 80046f9b1c3SMichael Lange for (d=dim-2; d>0; d--) depthShift[d] += depthRecv[d+1]; 80146f9b1c3SMichael Lange for (d=0; d<dim+1; d++) { 8029566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthStratum(dm, d, &pStart, &pEnd)); 80346f9b1c3SMichael Lange depthIdx[d] = pStart + depthShift[d]; 80446f9b1c3SMichael Lange } 80546f9b1c3SMichael Lange 80646f9b1c3SMichael Lange /* Form the overlap SF build an SF that describes the full overlap migration SF */ 8079566063dSJacob Faibussowitsch PetscCall(DMPlexGetChart(dm, &pStart, &pEnd)); 80846f9b1c3SMichael Lange newLeaves = pEnd - pStart + nleaves; 8099566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(newLeaves, &ilocal)); 8109566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(newLeaves, &iremote)); 81146f9b1c3SMichael Lange /* First map local points to themselves */ 81246f9b1c3SMichael Lange for (d=0; d<dim+1; d++) { 8139566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthStratum(dm, d, &pStart, &pEnd)); 81446f9b1c3SMichael Lange for (p=pStart; p<pEnd; p++) { 81546f9b1c3SMichael Lange point = p + depthShift[d]; 81646f9b1c3SMichael Lange ilocal[point] = point; 81746f9b1c3SMichael Lange iremote[point].index = p; 81846f9b1c3SMichael Lange iremote[point].rank = rank; 81946f9b1c3SMichael Lange depthIdx[d]++; 82046f9b1c3SMichael Lange } 82146f9b1c3SMichael Lange } 82246f9b1c3SMichael Lange 82346f9b1c3SMichael Lange /* Add in the remote roots for currently shared points */ 8249566063dSJacob Faibussowitsch PetscCall(DMGetPointSF(dm, &pointSF)); 8259566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(pointSF, NULL, &numSharedPoints, &sharedLocal, &sharedRemote)); 82646f9b1c3SMichael Lange for (d=0; d<dim+1; d++) { 8279566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthStratum(dm, d, &pStart, &pEnd)); 82846f9b1c3SMichael Lange for (p=0; p<numSharedPoints; p++) { 82946f9b1c3SMichael Lange if (pStart <= sharedLocal[p] && sharedLocal[p] < pEnd) { 83046f9b1c3SMichael Lange point = sharedLocal[p] + depthShift[d]; 83146f9b1c3SMichael Lange iremote[point].index = sharedRemote[p].index; 83246f9b1c3SMichael Lange iremote[point].rank = sharedRemote[p].rank; 83346f9b1c3SMichael Lange } 83446f9b1c3SMichael Lange } 83546f9b1c3SMichael Lange } 83646f9b1c3SMichael Lange 83746f9b1c3SMichael Lange /* Now add the incoming overlap points */ 83846f9b1c3SMichael Lange for (p=0; p<nleaves; p++) { 83946f9b1c3SMichael Lange point = depthIdx[remoteDepths[p]]; 84046f9b1c3SMichael Lange ilocal[point] = point; 84146f9b1c3SMichael Lange iremote[point].index = overlapRemote[p].index; 84246f9b1c3SMichael Lange iremote[point].rank = overlapRemote[p].rank; 84346f9b1c3SMichael Lange depthIdx[remoteDepths[p]]++; 84446f9b1c3SMichael Lange } 8459566063dSJacob Faibussowitsch PetscCall(PetscFree2(pointDepths,remoteDepths)); 84646f9b1c3SMichael Lange 8479566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(comm, migrationSF)); 8489566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject) *migrationSF, "Overlap Migration SF")); 8499566063dSJacob Faibussowitsch PetscCall(PetscSFSetFromOptions(*migrationSF)); 8509566063dSJacob Faibussowitsch PetscCall(DMPlexGetChart(dm, &pStart, &pEnd)); 8519566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(*migrationSF, pEnd-pStart, newLeaves, ilocal, PETSC_OWN_POINTER, iremote, PETSC_OWN_POINTER)); 85246f9b1c3SMichael Lange 8539566063dSJacob Faibussowitsch PetscCall(PetscFree3(depthRecv, depthShift, depthIdx)); 85470034214SMatthew G. Knepley PetscFunctionReturn(0); 85570034214SMatthew G. Knepley } 85670034214SMatthew G. Knepley 857a9f1d5b2SMichael Lange /*@ 858f0e73a3dSToby Isaac DMPlexStratifyMigrationSF - Rearrange the leaves of a migration sf for stratification. 859a9f1d5b2SMichael Lange 860064ec1f3Sprj- Input Parameters: 861a9f1d5b2SMichael Lange + dm - The DM 862a9f1d5b2SMichael Lange - sf - A star forest with non-ordered leaves, usually defining a DM point migration 863a9f1d5b2SMichael Lange 864a9f1d5b2SMichael Lange Output Parameter: 865a9f1d5b2SMichael Lange . migrationSF - A star forest with added leaf indirection that ensures the resulting DM is stratified 866a9f1d5b2SMichael Lange 867412e9a14SMatthew G. Knepley Note: 868412e9a14SMatthew G. Knepley This lexicographically sorts by (depth, cellType) 869412e9a14SMatthew G. Knepley 870a9f1d5b2SMichael Lange Level: developer 871a9f1d5b2SMichael Lange 872db781477SPatrick Sanan .seealso: `DMPlexPartitionLabelCreateSF()`, `DMPlexDistribute()`, `DMPlexDistributeOverlap()` 873a9f1d5b2SMichael Lange @*/ 874a9f1d5b2SMichael Lange PetscErrorCode DMPlexStratifyMigrationSF(DM dm, PetscSF sf, PetscSF *migrationSF) 875a9f1d5b2SMichael Lange { 876a9f1d5b2SMichael Lange MPI_Comm comm; 8779852e123SBarry Smith PetscMPIInt rank, size; 878412e9a14SMatthew G. Knepley PetscInt d, ldepth, depth, dim, p, pStart, pEnd, nroots, nleaves; 879412e9a14SMatthew G. Knepley PetscSFNode *pointDepths, *remoteDepths; 880412e9a14SMatthew G. Knepley PetscInt *ilocal; 881a9f1d5b2SMichael Lange PetscInt *depthRecv, *depthShift, *depthIdx; 882412e9a14SMatthew G. Knepley PetscInt *ctRecv, *ctShift, *ctIdx; 883a9f1d5b2SMichael Lange const PetscSFNode *iremote; 884a9f1d5b2SMichael Lange 885a9f1d5b2SMichael Lange PetscFunctionBegin; 886a9f1d5b2SMichael Lange PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 8879566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject) dm, &comm)); 8889566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 8899566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 8909566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepth(dm, &ldepth)); 8919566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 8921c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&ldepth, &depth, 1, MPIU_INT, MPI_MAX, comm)); 89363a3b9bcSJacob Faibussowitsch PetscCheck(!(ldepth >= 0) || !(depth != ldepth),PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Inconsistent Plex depth %" PetscInt_FMT " != %" PetscInt_FMT, ldepth, depth); 8949566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DMPLEX_PartStratSF,dm,0,0,0)); 895a9f1d5b2SMichael Lange 896a9f1d5b2SMichael Lange /* Before building the migration SF we need to know the new stratum offsets */ 8979566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(sf, &nroots, &nleaves, NULL, &iremote)); 8989566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(nroots, &pointDepths, nleaves, &remoteDepths)); 8997fab53ddSMatthew G. Knepley for (d = 0; d < depth+1; ++d) { 9009566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthStratum(dm, d, &pStart, &pEnd)); 901f0e73a3dSToby Isaac for (p = pStart; p < pEnd; ++p) { 902412e9a14SMatthew G. Knepley DMPolytopeType ct; 903f0e73a3dSToby Isaac 9049566063dSJacob Faibussowitsch PetscCall(DMPlexGetCellType(dm, p, &ct)); 905412e9a14SMatthew G. Knepley pointDepths[p].index = d; 906412e9a14SMatthew G. Knepley pointDepths[p].rank = ct; 907f0e73a3dSToby Isaac } 908412e9a14SMatthew G. Knepley } 909412e9a14SMatthew G. Knepley for (p = 0; p < nleaves; ++p) {remoteDepths[p].index = -1; remoteDepths[p].rank = -1;} 9109566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(sf, MPIU_2INT, pointDepths, remoteDepths,MPI_REPLACE)); 9119566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(sf, MPIU_2INT, pointDepths, remoteDepths,MPI_REPLACE)); 912412e9a14SMatthew G. Knepley /* Count received points in each stratum and compute the internal strata shift */ 9139566063dSJacob Faibussowitsch PetscCall(PetscCalloc6(depth+1, &depthRecv, depth+1, &depthShift, depth+1, &depthIdx, DM_NUM_POLYTOPES, &ctRecv, DM_NUM_POLYTOPES, &ctShift, DM_NUM_POLYTOPES, &ctIdx)); 914412e9a14SMatthew G. Knepley for (p = 0; p < nleaves; ++p) { 915412e9a14SMatthew G. Knepley if (remoteDepths[p].rank < 0) { 916412e9a14SMatthew G. Knepley ++depthRecv[remoteDepths[p].index]; 917412e9a14SMatthew G. Knepley } else { 918412e9a14SMatthew G. Knepley ++ctRecv[remoteDepths[p].rank]; 919412e9a14SMatthew G. Knepley } 920412e9a14SMatthew G. Knepley } 921412e9a14SMatthew G. Knepley { 922412e9a14SMatthew G. Knepley PetscInt depths[4], dims[4], shift = 0, i, c; 923412e9a14SMatthew G. Knepley 9248238f61eSMatthew G. Knepley /* Cells (depth), Vertices (0), Faces (depth-1), Edges (1) 9258238f61eSMatthew G. Knepley Consider DM_POLYTOPE_FV_GHOST and DM_POLYTOPE_INTERIOR_GHOST as cells 9268238f61eSMatthew G. Knepley */ 927412e9a14SMatthew G. Knepley depths[0] = depth; depths[1] = 0; depths[2] = depth-1; depths[3] = 1; 928412e9a14SMatthew G. Knepley dims[0] = dim; dims[1] = 0; dims[2] = dim-1; dims[3] = 1; 929412e9a14SMatthew G. Knepley for (i = 0; i <= depth; ++i) { 930412e9a14SMatthew G. Knepley const PetscInt dep = depths[i]; 931412e9a14SMatthew G. Knepley const PetscInt dim = dims[i]; 932412e9a14SMatthew G. Knepley 933412e9a14SMatthew G. Knepley for (c = 0; c < DM_NUM_POLYTOPES; ++c) { 9348238f61eSMatthew G. Knepley if (DMPolytopeTypeGetDim((DMPolytopeType) c) != dim && !(i == 0 && (c == DM_POLYTOPE_FV_GHOST || c == DM_POLYTOPE_INTERIOR_GHOST))) continue; 935412e9a14SMatthew G. Knepley ctShift[c] = shift; 936412e9a14SMatthew G. Knepley shift += ctRecv[c]; 937412e9a14SMatthew G. Knepley } 938412e9a14SMatthew G. Knepley depthShift[dep] = shift; 939412e9a14SMatthew G. Knepley shift += depthRecv[dep]; 940412e9a14SMatthew G. Knepley } 941412e9a14SMatthew G. Knepley for (c = 0; c < DM_NUM_POLYTOPES; ++c) { 942412e9a14SMatthew G. Knepley const PetscInt ctDim = DMPolytopeTypeGetDim((DMPolytopeType) c); 943412e9a14SMatthew G. Knepley 9448238f61eSMatthew G. Knepley if ((ctDim < 0 || ctDim > dim) && (c != DM_POLYTOPE_FV_GHOST && c != DM_POLYTOPE_INTERIOR_GHOST)) { 945412e9a14SMatthew G. Knepley ctShift[c] = shift; 946412e9a14SMatthew G. Knepley shift += ctRecv[c]; 947412e9a14SMatthew G. Knepley } 948412e9a14SMatthew G. Knepley } 949412e9a14SMatthew G. Knepley } 950a9f1d5b2SMichael Lange /* Derive a new local permutation based on stratified indices */ 9519566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nleaves, &ilocal)); 9527fab53ddSMatthew G. Knepley for (p = 0; p < nleaves; ++p) { 953412e9a14SMatthew G. Knepley const PetscInt dep = remoteDepths[p].index; 954412e9a14SMatthew G. Knepley const DMPolytopeType ct = (DMPolytopeType) remoteDepths[p].rank; 9557fab53ddSMatthew G. Knepley 956412e9a14SMatthew G. Knepley if ((PetscInt) ct < 0) { 9577fab53ddSMatthew G. Knepley ilocal[p] = depthShift[dep] + depthIdx[dep]; 958412e9a14SMatthew G. Knepley ++depthIdx[dep]; 959412e9a14SMatthew G. Knepley } else { 960412e9a14SMatthew G. Knepley ilocal[p] = ctShift[ct] + ctIdx[ct]; 961412e9a14SMatthew G. Knepley ++ctIdx[ct]; 962412e9a14SMatthew G. Knepley } 963a9f1d5b2SMichael Lange } 9649566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(comm, migrationSF)); 9659566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject) *migrationSF, "Migration SF")); 9669566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(*migrationSF, nroots, nleaves, ilocal, PETSC_OWN_POINTER, (PetscSFNode*)iremote, PETSC_COPY_VALUES)); 9679566063dSJacob Faibussowitsch PetscCall(PetscFree2(pointDepths,remoteDepths)); 9689566063dSJacob Faibussowitsch PetscCall(PetscFree6(depthRecv, depthShift, depthIdx, ctRecv, ctShift, ctIdx)); 9699566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DMPLEX_PartStratSF,dm,0,0,0)); 970a9f1d5b2SMichael Lange PetscFunctionReturn(0); 971a9f1d5b2SMichael Lange } 972a9f1d5b2SMichael Lange 97370034214SMatthew G. Knepley /*@ 97470034214SMatthew G. Knepley DMPlexDistributeField - Distribute field data to match a given PetscSF, usually the SF from mesh distribution 97570034214SMatthew G. Knepley 976d083f849SBarry Smith Collective on dm 97770034214SMatthew G. Knepley 97870034214SMatthew G. Knepley Input Parameters: 97970034214SMatthew G. Knepley + dm - The DMPlex object 98070034214SMatthew G. Knepley . pointSF - The PetscSF describing the communication pattern 98170034214SMatthew G. Knepley . originalSection - The PetscSection for existing data layout 982cb15cd0eSMatthew G. Knepley - originalVec - The existing data in a local vector 98370034214SMatthew G. Knepley 98470034214SMatthew G. Knepley Output Parameters: 98570034214SMatthew G. Knepley + newSection - The PetscSF describing the new data layout 986cb15cd0eSMatthew G. Knepley - newVec - The new data in a local vector 98770034214SMatthew G. Knepley 98870034214SMatthew G. Knepley Level: developer 98970034214SMatthew G. Knepley 990db781477SPatrick Sanan .seealso: `DMPlexDistribute()`, `DMPlexDistributeFieldIS()`, `DMPlexDistributeData()` 99170034214SMatthew G. Knepley @*/ 99270034214SMatthew G. Knepley PetscErrorCode DMPlexDistributeField(DM dm, PetscSF pointSF, PetscSection originalSection, Vec originalVec, PetscSection newSection, Vec newVec) 99370034214SMatthew G. Knepley { 99470034214SMatthew G. Knepley PetscSF fieldSF; 99570034214SMatthew G. Knepley PetscInt *remoteOffsets, fieldSize; 99670034214SMatthew G. Knepley PetscScalar *originalValues, *newValues; 99770034214SMatthew G. Knepley 99870034214SMatthew G. Knepley PetscFunctionBegin; 9999566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DMPLEX_DistributeField,dm,0,0,0)); 10009566063dSJacob Faibussowitsch PetscCall(PetscSFDistributeSection(pointSF, originalSection, &remoteOffsets, newSection)); 100170034214SMatthew G. Knepley 10029566063dSJacob Faibussowitsch PetscCall(PetscSectionGetStorageSize(newSection, &fieldSize)); 10039566063dSJacob Faibussowitsch PetscCall(VecSetSizes(newVec, fieldSize, PETSC_DETERMINE)); 10049566063dSJacob Faibussowitsch PetscCall(VecSetType(newVec,dm->vectype)); 100570034214SMatthew G. Knepley 10069566063dSJacob Faibussowitsch PetscCall(VecGetArray(originalVec, &originalValues)); 10079566063dSJacob Faibussowitsch PetscCall(VecGetArray(newVec, &newValues)); 10089566063dSJacob Faibussowitsch PetscCall(PetscSFCreateSectionSF(pointSF, originalSection, remoteOffsets, newSection, &fieldSF)); 10099566063dSJacob Faibussowitsch PetscCall(PetscFree(remoteOffsets)); 10109566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(fieldSF, MPIU_SCALAR, originalValues, newValues,MPI_REPLACE)); 10119566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(fieldSF, MPIU_SCALAR, originalValues, newValues,MPI_REPLACE)); 10129566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&fieldSF)); 10139566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(newVec, &newValues)); 10149566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(originalVec, &originalValues)); 10159566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DMPLEX_DistributeField,dm,0,0,0)); 101670034214SMatthew G. Knepley PetscFunctionReturn(0); 101770034214SMatthew G. Knepley } 101870034214SMatthew G. Knepley 101970034214SMatthew G. Knepley /*@ 102070034214SMatthew G. Knepley DMPlexDistributeFieldIS - Distribute field data to match a given PetscSF, usually the SF from mesh distribution 102170034214SMatthew G. Knepley 1022d083f849SBarry Smith Collective on dm 102370034214SMatthew G. Knepley 102470034214SMatthew G. Knepley Input Parameters: 102570034214SMatthew G. Knepley + dm - The DMPlex object 102670034214SMatthew G. Knepley . pointSF - The PetscSF describing the communication pattern 102770034214SMatthew G. Knepley . originalSection - The PetscSection for existing data layout 102870034214SMatthew G. Knepley - originalIS - The existing data 102970034214SMatthew G. Knepley 103070034214SMatthew G. Knepley Output Parameters: 103170034214SMatthew G. Knepley + newSection - The PetscSF describing the new data layout 103270034214SMatthew G. Knepley - newIS - The new data 103370034214SMatthew G. Knepley 103470034214SMatthew G. Knepley Level: developer 103570034214SMatthew G. Knepley 1036db781477SPatrick Sanan .seealso: `DMPlexDistribute()`, `DMPlexDistributeField()`, `DMPlexDistributeData()` 103770034214SMatthew G. Knepley @*/ 103870034214SMatthew G. Knepley PetscErrorCode DMPlexDistributeFieldIS(DM dm, PetscSF pointSF, PetscSection originalSection, IS originalIS, PetscSection newSection, IS *newIS) 103970034214SMatthew G. Knepley { 104070034214SMatthew G. Knepley PetscSF fieldSF; 104170034214SMatthew G. Knepley PetscInt *newValues, *remoteOffsets, fieldSize; 104270034214SMatthew G. Knepley const PetscInt *originalValues; 104370034214SMatthew G. Knepley 104470034214SMatthew G. Knepley PetscFunctionBegin; 10459566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DMPLEX_DistributeField,dm,0,0,0)); 10469566063dSJacob Faibussowitsch PetscCall(PetscSFDistributeSection(pointSF, originalSection, &remoteOffsets, newSection)); 104770034214SMatthew G. Knepley 10489566063dSJacob Faibussowitsch PetscCall(PetscSectionGetStorageSize(newSection, &fieldSize)); 10499566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(fieldSize, &newValues)); 105070034214SMatthew G. Knepley 10519566063dSJacob Faibussowitsch PetscCall(ISGetIndices(originalIS, &originalValues)); 10529566063dSJacob Faibussowitsch PetscCall(PetscSFCreateSectionSF(pointSF, originalSection, remoteOffsets, newSection, &fieldSF)); 10539566063dSJacob Faibussowitsch PetscCall(PetscFree(remoteOffsets)); 10549566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(fieldSF, MPIU_INT, (PetscInt *) originalValues, newValues,MPI_REPLACE)); 10559566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(fieldSF, MPIU_INT, (PetscInt *) originalValues, newValues,MPI_REPLACE)); 10569566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&fieldSF)); 10579566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(originalIS, &originalValues)); 10589566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject) pointSF), fieldSize, newValues, PETSC_OWN_POINTER, newIS)); 10599566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DMPLEX_DistributeField,dm,0,0,0)); 106070034214SMatthew G. Knepley PetscFunctionReturn(0); 106170034214SMatthew G. Knepley } 106270034214SMatthew G. Knepley 106370034214SMatthew G. Knepley /*@ 106470034214SMatthew G. Knepley DMPlexDistributeData - Distribute field data to match a given PetscSF, usually the SF from mesh distribution 106570034214SMatthew G. Knepley 1066d083f849SBarry Smith Collective on dm 106770034214SMatthew G. Knepley 106870034214SMatthew G. Knepley Input Parameters: 106970034214SMatthew G. Knepley + dm - The DMPlex object 107070034214SMatthew G. Knepley . pointSF - The PetscSF describing the communication pattern 107170034214SMatthew G. Knepley . originalSection - The PetscSection for existing data layout 107270034214SMatthew G. Knepley . datatype - The type of data 107370034214SMatthew G. Knepley - originalData - The existing data 107470034214SMatthew G. Knepley 107570034214SMatthew G. Knepley Output Parameters: 107670034214SMatthew G. Knepley + newSection - The PetscSection describing the new data layout 107770034214SMatthew G. Knepley - newData - The new data 107870034214SMatthew G. Knepley 107970034214SMatthew G. Knepley Level: developer 108070034214SMatthew G. Knepley 1081db781477SPatrick Sanan .seealso: `DMPlexDistribute()`, `DMPlexDistributeField()` 108270034214SMatthew G. Knepley @*/ 108370034214SMatthew G. Knepley PetscErrorCode DMPlexDistributeData(DM dm, PetscSF pointSF, PetscSection originalSection, MPI_Datatype datatype, void *originalData, PetscSection newSection, void **newData) 108470034214SMatthew G. Knepley { 108570034214SMatthew G. Knepley PetscSF fieldSF; 108670034214SMatthew G. Knepley PetscInt *remoteOffsets, fieldSize; 108770034214SMatthew G. Knepley PetscMPIInt dataSize; 108870034214SMatthew G. Knepley 108970034214SMatthew G. Knepley PetscFunctionBegin; 10909566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DMPLEX_DistributeData,dm,0,0,0)); 10919566063dSJacob Faibussowitsch PetscCall(PetscSFDistributeSection(pointSF, originalSection, &remoteOffsets, newSection)); 109270034214SMatthew G. Knepley 10939566063dSJacob Faibussowitsch PetscCall(PetscSectionGetStorageSize(newSection, &fieldSize)); 10949566063dSJacob Faibussowitsch PetscCallMPI(MPI_Type_size(datatype, &dataSize)); 10959566063dSJacob Faibussowitsch PetscCall(PetscMalloc(fieldSize * dataSize, newData)); 109670034214SMatthew G. Knepley 10979566063dSJacob Faibussowitsch PetscCall(PetscSFCreateSectionSF(pointSF, originalSection, remoteOffsets, newSection, &fieldSF)); 10989566063dSJacob Faibussowitsch PetscCall(PetscFree(remoteOffsets)); 10999566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(fieldSF, datatype, originalData, *newData,MPI_REPLACE)); 11009566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(fieldSF, datatype, originalData, *newData,MPI_REPLACE)); 11019566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&fieldSF)); 11029566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DMPLEX_DistributeData,dm,0,0,0)); 110370034214SMatthew G. Knepley PetscFunctionReturn(0); 110470034214SMatthew G. Knepley } 110570034214SMatthew G. Knepley 110624cc2ca5SMatthew G. Knepley static PetscErrorCode DMPlexDistributeCones(DM dm, PetscSF migrationSF, ISLocalToGlobalMapping original, ISLocalToGlobalMapping renumbering, DM dmParallel) 1107cc71bff1SMichael Lange { 1108cc71bff1SMichael Lange DM_Plex *pmesh = (DM_Plex*) (dmParallel)->data; 1109cc71bff1SMichael Lange MPI_Comm comm; 1110cc71bff1SMichael Lange PetscSF coneSF; 1111cc71bff1SMichael Lange PetscSection originalConeSection, newConeSection; 1112ac04eaf7SToby Isaac PetscInt *remoteOffsets, *cones, *globCones, *newCones, newConesSize; 1113cc71bff1SMichael Lange PetscBool flg; 1114cc71bff1SMichael Lange 1115cc71bff1SMichael Lange PetscFunctionBegin; 1116cc71bff1SMichael Lange PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 11170c86c063SLisandro Dalcin PetscValidHeaderSpecific(dmParallel, DM_CLASSID, 5); 11189566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DMPLEX_DistributeCones,dm,0,0,0)); 1119cc71bff1SMichael Lange /* Distribute cone section */ 11209566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)dm, &comm)); 11219566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSection(dm, &originalConeSection)); 11229566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSection(dmParallel, &newConeSection)); 11239566063dSJacob Faibussowitsch PetscCall(PetscSFDistributeSection(migrationSF, originalConeSection, &remoteOffsets, newConeSection)); 11249566063dSJacob Faibussowitsch PetscCall(DMSetUp(dmParallel)); 1125cc71bff1SMichael Lange /* Communicate and renumber cones */ 11269566063dSJacob Faibussowitsch PetscCall(PetscSFCreateSectionSF(migrationSF, originalConeSection, remoteOffsets, newConeSection, &coneSF)); 11279566063dSJacob Faibussowitsch PetscCall(PetscFree(remoteOffsets)); 11289566063dSJacob Faibussowitsch PetscCall(DMPlexGetCones(dm, &cones)); 1129ac04eaf7SToby Isaac if (original) { 1130ac04eaf7SToby Isaac PetscInt numCones; 1131ac04eaf7SToby Isaac 11329566063dSJacob Faibussowitsch PetscCall(PetscSectionGetStorageSize(originalConeSection,&numCones)); 11339566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(numCones,&globCones)); 11349566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingApplyBlock(original, numCones, cones, globCones)); 1135367003a6SStefano Zampini } else { 1136ac04eaf7SToby Isaac globCones = cones; 1137ac04eaf7SToby Isaac } 11389566063dSJacob Faibussowitsch PetscCall(DMPlexGetCones(dmParallel, &newCones)); 11399566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(coneSF, MPIU_INT, globCones, newCones,MPI_REPLACE)); 11409566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(coneSF, MPIU_INT, globCones, newCones,MPI_REPLACE)); 11411baa6e33SBarry Smith if (original) PetscCall(PetscFree(globCones)); 11429566063dSJacob Faibussowitsch PetscCall(PetscSectionGetStorageSize(newConeSection, &newConesSize)); 11439566063dSJacob Faibussowitsch PetscCall(ISGlobalToLocalMappingApplyBlock(renumbering, IS_GTOLM_MASK, newConesSize, newCones, NULL, newCones)); 114476bd3646SJed Brown if (PetscDefined(USE_DEBUG)) { 11453533c52bSMatthew G. Knepley PetscInt p; 11463533c52bSMatthew G. Knepley PetscBool valid = PETSC_TRUE; 11473533c52bSMatthew G. Knepley for (p = 0; p < newConesSize; ++p) { 114863a3b9bcSJacob Faibussowitsch if (newCones[p] < 0) {valid = PETSC_FALSE; PetscCall(PetscPrintf(PETSC_COMM_SELF, "[%d] Point %" PetscInt_FMT " not in overlap SF\n", PetscGlobalRank,p));} 11493533c52bSMatthew G. Knepley } 115028b400f6SJacob Faibussowitsch PetscCheck(valid,PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Invalid global to local map"); 11513533c52bSMatthew G. Knepley } 11529566063dSJacob Faibussowitsch PetscCall(PetscOptionsHasName(((PetscObject) dm)->options,((PetscObject) dm)->prefix, "-cones_view", &flg)); 1153cc71bff1SMichael Lange if (flg) { 11549566063dSJacob Faibussowitsch PetscCall(PetscPrintf(comm, "Serial Cone Section:\n")); 11559566063dSJacob Faibussowitsch PetscCall(PetscSectionView(originalConeSection, PETSC_VIEWER_STDOUT_(comm))); 11569566063dSJacob Faibussowitsch PetscCall(PetscPrintf(comm, "Parallel Cone Section:\n")); 11579566063dSJacob Faibussowitsch PetscCall(PetscSectionView(newConeSection, PETSC_VIEWER_STDOUT_(comm))); 11589566063dSJacob Faibussowitsch PetscCall(PetscSFView(coneSF, NULL)); 1159cc71bff1SMichael Lange } 11609566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeOrientations(dm, &cones)); 11619566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeOrientations(dmParallel, &newCones)); 11629566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(coneSF, MPIU_INT, cones, newCones,MPI_REPLACE)); 11639566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(coneSF, MPIU_INT, cones, newCones,MPI_REPLACE)); 11649566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&coneSF)); 11659566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DMPLEX_DistributeCones,dm,0,0,0)); 1166eaf898f9SPatrick Sanan /* Create supports and stratify DMPlex */ 1167cc71bff1SMichael Lange { 1168cc71bff1SMichael Lange PetscInt pStart, pEnd; 1169cc71bff1SMichael Lange 11709566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(pmesh->coneSection, &pStart, &pEnd)); 11719566063dSJacob Faibussowitsch PetscCall(PetscSectionSetChart(pmesh->supportSection, pStart, pEnd)); 1172cc71bff1SMichael Lange } 11739566063dSJacob Faibussowitsch PetscCall(DMPlexSymmetrize(dmParallel)); 11749566063dSJacob Faibussowitsch PetscCall(DMPlexStratify(dmParallel)); 11751cf84007SMatthew G. Knepley { 11761cf84007SMatthew G. Knepley PetscBool useCone, useClosure, useAnchors; 11771cf84007SMatthew G. Knepley 11789566063dSJacob Faibussowitsch PetscCall(DMGetBasicAdjacency(dm, &useCone, &useClosure)); 11799566063dSJacob Faibussowitsch PetscCall(DMSetBasicAdjacency(dmParallel, useCone, useClosure)); 11809566063dSJacob Faibussowitsch PetscCall(DMPlexGetAdjacencyUseAnchors(dm, &useAnchors)); 11819566063dSJacob Faibussowitsch PetscCall(DMPlexSetAdjacencyUseAnchors(dmParallel, useAnchors)); 11821cf84007SMatthew G. Knepley } 1183cc71bff1SMichael Lange PetscFunctionReturn(0); 1184cc71bff1SMichael Lange } 1185cc71bff1SMichael Lange 118624cc2ca5SMatthew G. Knepley static PetscErrorCode DMPlexDistributeCoordinates(DM dm, PetscSF migrationSF, DM dmParallel) 11870df0e737SMichael Lange { 11880df0e737SMichael Lange MPI_Comm comm; 11899318fe57SMatthew G. Knepley DM cdm, cdmParallel; 11900df0e737SMichael Lange PetscSection originalCoordSection, newCoordSection; 11910df0e737SMichael Lange Vec originalCoordinates, newCoordinates; 11920df0e737SMichael Lange PetscInt bs; 11930df0e737SMichael Lange const char *name; 1194*4fb89dddSMatthew G. Knepley const PetscReal *maxCell, *Lstart, *L; 11950df0e737SMichael Lange 11960df0e737SMichael Lange PetscFunctionBegin; 11970df0e737SMichael Lange PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 11980c86c063SLisandro Dalcin PetscValidHeaderSpecific(dmParallel, DM_CLASSID, 3); 11990df0e737SMichael Lange 12009566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)dm, &comm)); 12016858538eSMatthew G. Knepley PetscCall(DMGetCoordinateDM(dm, &cdm)); 12026858538eSMatthew G. Knepley PetscCall(DMGetCoordinateDM(dmParallel, &cdmParallel)); 12036858538eSMatthew G. Knepley PetscCall(DMCopyDisc(cdm, cdmParallel)); 12049566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateSection(dm, &originalCoordSection)); 12059566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateSection(dmParallel, &newCoordSection)); 12069566063dSJacob Faibussowitsch PetscCall(DMGetCoordinatesLocal(dm, &originalCoordinates)); 12070df0e737SMichael Lange if (originalCoordinates) { 12089566063dSJacob Faibussowitsch PetscCall(VecCreate(PETSC_COMM_SELF, &newCoordinates)); 12099566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject) originalCoordinates, &name)); 12109566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject) newCoordinates, name)); 12110df0e737SMichael Lange 12129566063dSJacob Faibussowitsch PetscCall(DMPlexDistributeField(dm, migrationSF, originalCoordSection, originalCoordinates, newCoordSection, newCoordinates)); 12139566063dSJacob Faibussowitsch PetscCall(DMSetCoordinatesLocal(dmParallel, newCoordinates)); 12149566063dSJacob Faibussowitsch PetscCall(VecGetBlockSize(originalCoordinates, &bs)); 12159566063dSJacob Faibussowitsch PetscCall(VecSetBlockSize(newCoordinates, bs)); 12169566063dSJacob Faibussowitsch PetscCall(VecDestroy(&newCoordinates)); 12170df0e737SMichael Lange } 12186858538eSMatthew G. Knepley 12196858538eSMatthew G. Knepley PetscCall(PetscObjectGetComm((PetscObject)dm, &comm)); 1220*4fb89dddSMatthew G. Knepley PetscCall(DMGetPeriodicity(dm, &maxCell, &Lstart, &L)); 1221*4fb89dddSMatthew G. Knepley PetscCall(DMSetPeriodicity(dmParallel, maxCell, Lstart, L)); 12226858538eSMatthew G. Knepley PetscCall(DMGetCellCoordinateDM(dm, &cdm)); 12236858538eSMatthew G. Knepley if (cdm) { 12246858538eSMatthew G. Knepley PetscCall(DMClone(dmParallel, &cdmParallel)); 12256858538eSMatthew G. Knepley PetscCall(DMSetCellCoordinateDM(dmParallel, cdmParallel)); 12269566063dSJacob Faibussowitsch PetscCall(DMCopyDisc(cdm, cdmParallel)); 12276858538eSMatthew G. Knepley PetscCall(DMDestroy(&cdmParallel)); 12286858538eSMatthew G. Knepley PetscCall(DMGetCellCoordinateSection(dm, &originalCoordSection)); 12296858538eSMatthew G. Knepley PetscCall(DMGetCellCoordinatesLocal(dm, &originalCoordinates)); 12306858538eSMatthew G. Knepley PetscCall(PetscSectionCreate(comm, &newCoordSection)); 12316858538eSMatthew G. Knepley if (originalCoordinates) { 12326858538eSMatthew G. Knepley PetscCall(VecCreate(PETSC_COMM_SELF, &newCoordinates)); 12336858538eSMatthew G. Knepley PetscCall(PetscObjectGetName((PetscObject) originalCoordinates, &name)); 12346858538eSMatthew G. Knepley PetscCall(PetscObjectSetName((PetscObject) newCoordinates, name)); 12356858538eSMatthew G. Knepley 12366858538eSMatthew G. Knepley PetscCall(DMPlexDistributeField(dm, migrationSF, originalCoordSection, originalCoordinates, newCoordSection, newCoordinates)); 12376858538eSMatthew G. Knepley PetscCall(VecGetBlockSize(originalCoordinates, &bs)); 12386858538eSMatthew G. Knepley PetscCall(VecSetBlockSize(newCoordinates, bs)); 12396858538eSMatthew G. Knepley PetscCall(DMSetCellCoordinateSection(dmParallel, bs, newCoordSection)); 12406858538eSMatthew G. Knepley PetscCall(DMSetCellCoordinatesLocal(dmParallel, newCoordinates)); 12416858538eSMatthew G. Knepley PetscCall(VecDestroy(&newCoordinates)); 12426858538eSMatthew G. Knepley } 12436858538eSMatthew G. Knepley PetscCall(PetscSectionDestroy(&newCoordSection)); 12446858538eSMatthew G. Knepley } 12450df0e737SMichael Lange PetscFunctionReturn(0); 12460df0e737SMichael Lange } 12470df0e737SMichael Lange 124824cc2ca5SMatthew G. Knepley static PetscErrorCode DMPlexDistributeLabels(DM dm, PetscSF migrationSF, DM dmParallel) 12490df0e737SMichael Lange { 1250df0420ecSMatthew G. Knepley DM_Plex *mesh = (DM_Plex*) dm->data; 12510df0e737SMichael Lange MPI_Comm comm; 12527980c9d4SMatthew G. Knepley DMLabel depthLabel; 12530df0e737SMichael Lange PetscMPIInt rank; 12547980c9d4SMatthew G. Knepley PetscInt depth, d, numLabels, numLocalLabels, l; 1255df0420ecSMatthew G. Knepley PetscBool hasLabels = PETSC_FALSE, lsendDepth, sendDepth; 1256df0420ecSMatthew G. Knepley PetscObjectState depthState = -1; 12570df0e737SMichael Lange 12580df0e737SMichael Lange PetscFunctionBegin; 12590df0e737SMichael Lange PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 12600c86c063SLisandro Dalcin PetscValidHeaderSpecific(dmParallel, DM_CLASSID, 3); 12610c86c063SLisandro Dalcin 12629566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DMPLEX_DistributeLabels,dm,0,0,0)); 12639566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)dm, &comm)); 12649566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 12650df0e737SMichael Lange 1266df0420ecSMatthew G. Knepley /* If the user has changed the depth label, communicate it instead */ 12679566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepth(dm, &depth)); 12689566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthLabel(dm, &depthLabel)); 12699566063dSJacob Faibussowitsch if (depthLabel) PetscCall(PetscObjectStateGet((PetscObject) depthLabel, &depthState)); 1270df0420ecSMatthew G. Knepley lsendDepth = mesh->depthState != depthState ? PETSC_TRUE : PETSC_FALSE; 12711c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&lsendDepth, &sendDepth, 1, MPIU_BOOL, MPI_LOR, comm)); 1272df0420ecSMatthew G. Knepley if (sendDepth) { 12739566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthLabel(dmParallel, &dmParallel->depthLabel)); 12749566063dSJacob Faibussowitsch PetscCall(DMRemoveLabelBySelf(dmParallel, &dmParallel->depthLabel, PETSC_FALSE)); 1275df0420ecSMatthew G. Knepley } 1276d995df53SMatthew G. Knepley /* Everyone must have either the same number of labels, or none */ 12779566063dSJacob Faibussowitsch PetscCall(DMGetNumLabels(dm, &numLocalLabels)); 1278d995df53SMatthew G. Knepley numLabels = numLocalLabels; 12799566063dSJacob Faibussowitsch PetscCallMPI(MPI_Bcast(&numLabels, 1, MPIU_INT, 0, comm)); 1280627847f0SMatthew G. Knepley if (numLabels == numLocalLabels) hasLabels = PETSC_TRUE; 12815d80c0bfSVaclav Hapla for (l = 0; l < numLabels; ++l) { 1282bdd2d751SMichael Lange DMLabel label = NULL, labelNew = NULL; 128383e10cb3SLisandro Dalcin PetscBool isDepth, lisOutput = PETSC_TRUE, isOutput; 1284d67d17b1SMatthew G. Knepley const char *name = NULL; 12850df0e737SMichael Lange 1286d67d17b1SMatthew G. Knepley if (hasLabels) { 12879566063dSJacob Faibussowitsch PetscCall(DMGetLabelByNum(dm, l, &label)); 12880df0e737SMichael Lange /* Skip "depth" because it is recreated */ 12899566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject) label, &name)); 12909566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(name, "depth", &isDepth)); 1291d67d17b1SMatthew G. Knepley } 12929566063dSJacob Faibussowitsch PetscCallMPI(MPI_Bcast(&isDepth, 1, MPIU_BOOL, 0, comm)); 129383e10cb3SLisandro Dalcin if (isDepth && !sendDepth) continue; 12949566063dSJacob Faibussowitsch PetscCall(DMLabelDistribute(label, migrationSF, &labelNew)); 129583e10cb3SLisandro Dalcin if (isDepth) { 12967980c9d4SMatthew G. Knepley /* Put in any missing strata which can occur if users are managing the depth label themselves */ 12977980c9d4SMatthew G. Knepley PetscInt gdepth; 12987980c9d4SMatthew G. Knepley 12991c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&depth, &gdepth, 1, MPIU_INT, MPI_MAX, comm)); 130063a3b9bcSJacob Faibussowitsch PetscCheck(!(depth >= 0) || !(gdepth != depth),PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Inconsistent Plex depth %" PetscInt_FMT " != %" PetscInt_FMT, depth, gdepth); 13017980c9d4SMatthew G. Knepley for (d = 0; d <= gdepth; ++d) { 13027980c9d4SMatthew G. Knepley PetscBool has; 13037980c9d4SMatthew G. Knepley 13049566063dSJacob Faibussowitsch PetscCall(DMLabelHasStratum(labelNew, d, &has)); 13059566063dSJacob Faibussowitsch if (!has) PetscCall(DMLabelAddStratum(labelNew, d)); 13067980c9d4SMatthew G. Knepley } 13077980c9d4SMatthew G. Knepley } 13089566063dSJacob Faibussowitsch PetscCall(DMAddLabel(dmParallel, labelNew)); 130983e10cb3SLisandro Dalcin /* Put the output flag in the new label */ 13109566063dSJacob Faibussowitsch if (hasLabels) PetscCall(DMGetLabelOutput(dm, name, &lisOutput)); 13111c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&lisOutput, &isOutput, 1, MPIU_BOOL, MPI_LAND, comm)); 13129566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject) labelNew, &name)); 13139566063dSJacob Faibussowitsch PetscCall(DMSetLabelOutput(dmParallel, name, isOutput)); 13149566063dSJacob Faibussowitsch PetscCall(DMLabelDestroy(&labelNew)); 13150df0e737SMichael Lange } 13169566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DMPLEX_DistributeLabels,dm,0,0,0)); 13170df0e737SMichael Lange PetscFunctionReturn(0); 13180df0e737SMichael Lange } 13190df0e737SMichael Lange 132024cc2ca5SMatthew G. Knepley static PetscErrorCode DMPlexDistributeSetupTree(DM dm, PetscSF migrationSF, ISLocalToGlobalMapping original, ISLocalToGlobalMapping renumbering, DM dmParallel) 1321a6f36705SMichael Lange { 132215078cd4SMichael Lange DM_Plex *mesh = (DM_Plex*) dm->data; 132315078cd4SMichael Lange DM_Plex *pmesh = (DM_Plex*) (dmParallel)->data; 1324a6f36705SMichael Lange MPI_Comm comm; 1325a6f36705SMichael Lange DM refTree; 1326a6f36705SMichael Lange PetscSection origParentSection, newParentSection; 1327a6f36705SMichael Lange PetscInt *origParents, *origChildIDs; 1328a6f36705SMichael Lange PetscBool flg; 1329a6f36705SMichael Lange 1330a6f36705SMichael Lange PetscFunctionBegin; 1331a6f36705SMichael Lange PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 13320c86c063SLisandro Dalcin PetscValidHeaderSpecific(dmParallel, DM_CLASSID, 5); 13339566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)dm, &comm)); 1334a6f36705SMichael Lange 1335a6f36705SMichael Lange /* Set up tree */ 13369566063dSJacob Faibussowitsch PetscCall(DMPlexGetReferenceTree(dm,&refTree)); 13379566063dSJacob Faibussowitsch PetscCall(DMPlexSetReferenceTree(dmParallel,refTree)); 13389566063dSJacob Faibussowitsch PetscCall(DMPlexGetTree(dm,&origParentSection,&origParents,&origChildIDs,NULL,NULL)); 1339a6f36705SMichael Lange if (origParentSection) { 1340a6f36705SMichael Lange PetscInt pStart, pEnd; 134108633170SToby Isaac PetscInt *newParents, *newChildIDs, *globParents; 1342a6f36705SMichael Lange PetscInt *remoteOffsetsParents, newParentSize; 1343a6f36705SMichael Lange PetscSF parentSF; 1344a6f36705SMichael Lange 13459566063dSJacob Faibussowitsch PetscCall(DMPlexGetChart(dmParallel, &pStart, &pEnd)); 13469566063dSJacob Faibussowitsch PetscCall(PetscSectionCreate(PetscObjectComm((PetscObject)dmParallel),&newParentSection)); 13479566063dSJacob Faibussowitsch PetscCall(PetscSectionSetChart(newParentSection,pStart,pEnd)); 13489566063dSJacob Faibussowitsch PetscCall(PetscSFDistributeSection(migrationSF, origParentSection, &remoteOffsetsParents, newParentSection)); 13499566063dSJacob Faibussowitsch PetscCall(PetscSFCreateSectionSF(migrationSF, origParentSection, remoteOffsetsParents, newParentSection, &parentSF)); 13509566063dSJacob Faibussowitsch PetscCall(PetscFree(remoteOffsetsParents)); 13519566063dSJacob Faibussowitsch PetscCall(PetscSectionGetStorageSize(newParentSection,&newParentSize)); 13529566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(newParentSize,&newParents,newParentSize,&newChildIDs)); 135308633170SToby Isaac if (original) { 135408633170SToby Isaac PetscInt numParents; 135508633170SToby Isaac 13569566063dSJacob Faibussowitsch PetscCall(PetscSectionGetStorageSize(origParentSection,&numParents)); 13579566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(numParents,&globParents)); 13589566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingApplyBlock(original, numParents, origParents, globParents)); 135908633170SToby Isaac } 136008633170SToby Isaac else { 136108633170SToby Isaac globParents = origParents; 136208633170SToby Isaac } 13639566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(parentSF, MPIU_INT, globParents, newParents,MPI_REPLACE)); 13649566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(parentSF, MPIU_INT, globParents, newParents,MPI_REPLACE)); 13651baa6e33SBarry Smith if (original) PetscCall(PetscFree(globParents)); 13669566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(parentSF, MPIU_INT, origChildIDs, newChildIDs,MPI_REPLACE)); 13679566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(parentSF, MPIU_INT, origChildIDs, newChildIDs,MPI_REPLACE)); 13689566063dSJacob Faibussowitsch PetscCall(ISGlobalToLocalMappingApplyBlock(renumbering,IS_GTOLM_MASK, newParentSize, newParents, NULL, newParents)); 136976bd3646SJed Brown if (PetscDefined(USE_DEBUG)) { 13704a54e071SToby Isaac PetscInt p; 13714a54e071SToby Isaac PetscBool valid = PETSC_TRUE; 13724a54e071SToby Isaac for (p = 0; p < newParentSize; ++p) { 137363a3b9bcSJacob Faibussowitsch if (newParents[p] < 0) {valid = PETSC_FALSE; PetscCall(PetscPrintf(PETSC_COMM_SELF, "Point %" PetscInt_FMT " not in overlap SF\n", p));} 13744a54e071SToby Isaac } 137528b400f6SJacob Faibussowitsch PetscCheck(valid,PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Invalid global to local map"); 13764a54e071SToby Isaac } 13779566063dSJacob Faibussowitsch PetscCall(PetscOptionsHasName(((PetscObject) dm)->options,((PetscObject) dm)->prefix, "-parents_view", &flg)); 1378a6f36705SMichael Lange if (flg) { 13799566063dSJacob Faibussowitsch PetscCall(PetscPrintf(comm, "Serial Parent Section: \n")); 13809566063dSJacob Faibussowitsch PetscCall(PetscSectionView(origParentSection, PETSC_VIEWER_STDOUT_(comm))); 13819566063dSJacob Faibussowitsch PetscCall(PetscPrintf(comm, "Parallel Parent Section: \n")); 13829566063dSJacob Faibussowitsch PetscCall(PetscSectionView(newParentSection, PETSC_VIEWER_STDOUT_(comm))); 13839566063dSJacob Faibussowitsch PetscCall(PetscSFView(parentSF, NULL)); 1384a6f36705SMichael Lange } 13859566063dSJacob Faibussowitsch PetscCall(DMPlexSetTree(dmParallel,newParentSection,newParents,newChildIDs)); 13869566063dSJacob Faibussowitsch PetscCall(PetscSectionDestroy(&newParentSection)); 13879566063dSJacob Faibussowitsch PetscCall(PetscFree2(newParents,newChildIDs)); 13889566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&parentSF)); 1389a6f36705SMichael Lange } 139015078cd4SMichael Lange pmesh->useAnchors = mesh->useAnchors; 1391a6f36705SMichael Lange PetscFunctionReturn(0); 1392a6f36705SMichael Lange } 13930df0e737SMichael Lange 139424cc2ca5SMatthew G. Knepley PETSC_UNUSED static PetscErrorCode DMPlexDistributeSF(DM dm, PetscSF migrationSF, DM dmParallel) 13954eca1733SMichael Lange { 13969852e123SBarry Smith PetscMPIInt rank, size; 13974eca1733SMichael Lange MPI_Comm comm; 13984eca1733SMichael Lange 13994eca1733SMichael Lange PetscFunctionBegin; 14004eca1733SMichael Lange PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 14010c86c063SLisandro Dalcin PetscValidHeaderSpecific(dmParallel, DM_CLASSID, 3); 14024eca1733SMichael Lange 14034eca1733SMichael Lange /* Create point SF for parallel mesh */ 14049566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DMPLEX_DistributeSF,dm,0,0,0)); 14059566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)dm, &comm)); 14069566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 14079566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 14084eca1733SMichael Lange { 14094eca1733SMichael Lange const PetscInt *leaves; 14104eca1733SMichael Lange PetscSFNode *remotePoints, *rowners, *lowners; 14114eca1733SMichael Lange PetscInt numRoots, numLeaves, numGhostPoints = 0, p, gp, *ghostPoints; 14124eca1733SMichael Lange PetscInt pStart, pEnd; 14134eca1733SMichael Lange 14149566063dSJacob Faibussowitsch PetscCall(DMPlexGetChart(dmParallel, &pStart, &pEnd)); 14159566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(migrationSF, &numRoots, &numLeaves, &leaves, NULL)); 14169566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(numRoots,&rowners,numLeaves,&lowners)); 14174eca1733SMichael Lange for (p=0; p<numRoots; p++) { 14184eca1733SMichael Lange rowners[p].rank = -1; 14194eca1733SMichael Lange rowners[p].index = -1; 14204eca1733SMichael Lange } 14219566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(migrationSF, MPIU_2INT, rowners, lowners,MPI_REPLACE)); 14229566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(migrationSF, MPIU_2INT, rowners, lowners,MPI_REPLACE)); 14234eca1733SMichael Lange for (p = 0; p < numLeaves; ++p) { 14244eca1733SMichael Lange if (lowners[p].rank < 0 || lowners[p].rank == rank) { /* Either put in a bid or we know we own it */ 14254eca1733SMichael Lange lowners[p].rank = rank; 14264eca1733SMichael Lange lowners[p].index = leaves ? leaves[p] : p; 14274eca1733SMichael Lange } else if (lowners[p].rank >= 0) { /* Point already claimed so flag so that MAXLOC does not listen to us */ 14284eca1733SMichael Lange lowners[p].rank = -2; 14294eca1733SMichael Lange lowners[p].index = -2; 14304eca1733SMichael Lange } 14314eca1733SMichael Lange } 14324eca1733SMichael Lange for (p=0; p<numRoots; p++) { /* Root must not participate in the rediction, flag so that MAXLOC does not use */ 14334eca1733SMichael Lange rowners[p].rank = -3; 14344eca1733SMichael Lange rowners[p].index = -3; 14354eca1733SMichael Lange } 14369566063dSJacob Faibussowitsch PetscCall(PetscSFReduceBegin(migrationSF, MPIU_2INT, lowners, rowners, MPI_MAXLOC)); 14379566063dSJacob Faibussowitsch PetscCall(PetscSFReduceEnd(migrationSF, MPIU_2INT, lowners, rowners, MPI_MAXLOC)); 14389566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(migrationSF, MPIU_2INT, rowners, lowners,MPI_REPLACE)); 14399566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(migrationSF, MPIU_2INT, rowners, lowners,MPI_REPLACE)); 14404eca1733SMichael Lange for (p = 0; p < numLeaves; ++p) { 14411dca8a05SBarry Smith PetscCheck(lowners[p].rank >= 0 && lowners[p].index >= 0,PETSC_COMM_SELF,PETSC_ERR_PLIB,"Cell partition corrupt: point not claimed"); 14424eca1733SMichael Lange if (lowners[p].rank != rank) ++numGhostPoints; 14434eca1733SMichael Lange } 14449566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(numGhostPoints, &ghostPoints)); 14459566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(numGhostPoints, &remotePoints)); 14464eca1733SMichael Lange for (p = 0, gp = 0; p < numLeaves; ++p) { 14474eca1733SMichael Lange if (lowners[p].rank != rank) { 14484eca1733SMichael Lange ghostPoints[gp] = leaves ? leaves[p] : p; 14494eca1733SMichael Lange remotePoints[gp].rank = lowners[p].rank; 14504eca1733SMichael Lange remotePoints[gp].index = lowners[p].index; 14514eca1733SMichael Lange ++gp; 14524eca1733SMichael Lange } 14534eca1733SMichael Lange } 14549566063dSJacob Faibussowitsch PetscCall(PetscFree2(rowners,lowners)); 14559566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph((dmParallel)->sf, pEnd - pStart, numGhostPoints, ghostPoints, PETSC_OWN_POINTER, remotePoints, PETSC_OWN_POINTER)); 14569566063dSJacob Faibussowitsch PetscCall(PetscSFSetFromOptions((dmParallel)->sf)); 14574eca1733SMichael Lange } 14581cf84007SMatthew G. Knepley { 14591cf84007SMatthew G. Knepley PetscBool useCone, useClosure, useAnchors; 14601cf84007SMatthew G. Knepley 14619566063dSJacob Faibussowitsch PetscCall(DMGetBasicAdjacency(dm, &useCone, &useClosure)); 14629566063dSJacob Faibussowitsch PetscCall(DMSetBasicAdjacency(dmParallel, useCone, useClosure)); 14639566063dSJacob Faibussowitsch PetscCall(DMPlexGetAdjacencyUseAnchors(dm, &useAnchors)); 14649566063dSJacob Faibussowitsch PetscCall(DMPlexSetAdjacencyUseAnchors(dmParallel, useAnchors)); 14651cf84007SMatthew G. Knepley } 14669566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DMPLEX_DistributeSF,dm,0,0,0)); 14674eca1733SMichael Lange PetscFunctionReturn(0); 14684eca1733SMichael Lange } 14694eca1733SMichael Lange 147098ba2d7fSLawrence Mitchell /*@ 147198ba2d7fSLawrence Mitchell DMPlexSetPartitionBalance - Should distribution of the DM attempt to balance the shared point partition? 147298ba2d7fSLawrence Mitchell 147398ba2d7fSLawrence Mitchell Input Parameters: 147498ba2d7fSLawrence Mitchell + dm - The DMPlex object 147598ba2d7fSLawrence Mitchell - flg - Balance the partition? 147698ba2d7fSLawrence Mitchell 147798ba2d7fSLawrence Mitchell Level: intermediate 147898ba2d7fSLawrence Mitchell 1479db781477SPatrick Sanan .seealso: `DMPlexDistribute()`, `DMPlexGetPartitionBalance()` 148098ba2d7fSLawrence Mitchell @*/ 148198ba2d7fSLawrence Mitchell PetscErrorCode DMPlexSetPartitionBalance(DM dm, PetscBool flg) 148298ba2d7fSLawrence Mitchell { 148398ba2d7fSLawrence Mitchell DM_Plex *mesh = (DM_Plex *)dm->data; 148498ba2d7fSLawrence Mitchell 148598ba2d7fSLawrence Mitchell PetscFunctionBegin; 148698ba2d7fSLawrence Mitchell mesh->partitionBalance = flg; 148798ba2d7fSLawrence Mitchell PetscFunctionReturn(0); 148898ba2d7fSLawrence Mitchell } 148998ba2d7fSLawrence Mitchell 149098ba2d7fSLawrence Mitchell /*@ 149198ba2d7fSLawrence Mitchell DMPlexGetPartitionBalance - Does distribution of the DM attempt to balance the shared point partition? 149298ba2d7fSLawrence Mitchell 149398ba2d7fSLawrence Mitchell Input Parameter: 1494a2b725a8SWilliam Gropp . dm - The DMPlex object 149598ba2d7fSLawrence Mitchell 149698ba2d7fSLawrence Mitchell Output Parameter: 1497a2b725a8SWilliam Gropp . flg - Balance the partition? 149898ba2d7fSLawrence Mitchell 149998ba2d7fSLawrence Mitchell Level: intermediate 150098ba2d7fSLawrence Mitchell 1501db781477SPatrick Sanan .seealso: `DMPlexDistribute()`, `DMPlexSetPartitionBalance()` 150298ba2d7fSLawrence Mitchell @*/ 150398ba2d7fSLawrence Mitchell PetscErrorCode DMPlexGetPartitionBalance(DM dm, PetscBool *flg) 150498ba2d7fSLawrence Mitchell { 150598ba2d7fSLawrence Mitchell DM_Plex *mesh = (DM_Plex *)dm->data; 150698ba2d7fSLawrence Mitchell 150798ba2d7fSLawrence Mitchell PetscFunctionBegin; 150898ba2d7fSLawrence Mitchell PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 1509534a8f05SLisandro Dalcin PetscValidBoolPointer(flg, 2); 151098ba2d7fSLawrence Mitchell *flg = mesh->partitionBalance; 151198ba2d7fSLawrence Mitchell PetscFunctionReturn(0); 151298ba2d7fSLawrence Mitchell } 151398ba2d7fSLawrence Mitchell 1514fc02256fSLawrence Mitchell typedef struct { 1515fc02256fSLawrence Mitchell PetscInt vote, rank, index; 1516fc02256fSLawrence Mitchell } Petsc3Int; 1517fc02256fSLawrence Mitchell 1518fc02256fSLawrence Mitchell /* MaxLoc, but carry a third piece of information around */ 15192eb0eadbSSatish Balay static void MPIAPI MaxLocCarry(void *in_, void *inout_, PetscMPIInt *len_, MPI_Datatype *dtype) 1520fc02256fSLawrence Mitchell { 1521fc02256fSLawrence Mitchell Petsc3Int *a = (Petsc3Int *)inout_; 1522fc02256fSLawrence Mitchell Petsc3Int *b = (Petsc3Int *)in_; 1523fc02256fSLawrence Mitchell PetscInt i, len = *len_; 1524fc02256fSLawrence Mitchell for (i = 0; i < len; i++) { 1525fc02256fSLawrence Mitchell if (a[i].vote < b[i].vote) { 1526fc02256fSLawrence Mitchell a[i].vote = b[i].vote; 1527fc02256fSLawrence Mitchell a[i].rank = b[i].rank; 1528fc02256fSLawrence Mitchell a[i].index = b[i].index; 1529fc02256fSLawrence Mitchell } else if (a[i].vote <= b[i].vote) { 1530fc02256fSLawrence Mitchell if (a[i].rank >= b[i].rank) { 1531fc02256fSLawrence Mitchell a[i].rank = b[i].rank; 1532fc02256fSLawrence Mitchell a[i].index = b[i].index; 1533fc02256fSLawrence Mitchell } 1534fc02256fSLawrence Mitchell } 1535fc02256fSLawrence Mitchell } 1536fc02256fSLawrence Mitchell } 1537fc02256fSLawrence Mitchell 1538f5bf2dbfSMichael Lange /*@C 1539a8c5bd36SStefano Zampini DMPlexCreatePointSF - Build a point SF from an SF describing a point migration 1540f5bf2dbfSMichael Lange 1541064ec1f3Sprj- Input Parameters: 1542f5bf2dbfSMichael Lange + dm - The source DMPlex object 1543f5bf2dbfSMichael Lange . migrationSF - The star forest that describes the parallel point remapping 1544d8d19677SJose E. Roman - ownership - Flag causing a vote to determine point ownership 1545f5bf2dbfSMichael Lange 1546f5bf2dbfSMichael Lange Output Parameter: 1547d8d19677SJose E. Roman . pointSF - The star forest describing the point overlap in the remapped DM 1548f5bf2dbfSMichael Lange 15493618482eSVaclav Hapla Notes: 15503618482eSVaclav Hapla Output pointSF is guaranteed to have the array of local indices (leaves) sorted. 15513618482eSVaclav Hapla 1552f5bf2dbfSMichael Lange Level: developer 1553f5bf2dbfSMichael Lange 1554db781477SPatrick Sanan .seealso: `DMPlexDistribute()`, `DMPlexDistributeOverlap()` 1555f5bf2dbfSMichael Lange @*/ 1556f5bf2dbfSMichael Lange PetscErrorCode DMPlexCreatePointSF(DM dm, PetscSF migrationSF, PetscBool ownership, PetscSF *pointSF) 1557f5bf2dbfSMichael Lange { 155823193802SMatthew G. Knepley PetscMPIInt rank, size; 15591627f6ccSMichael Lange PetscInt p, nroots, nleaves, idx, npointLeaves; 1560f5bf2dbfSMichael Lange PetscInt *pointLocal; 1561f5bf2dbfSMichael Lange const PetscInt *leaves; 1562f5bf2dbfSMichael Lange const PetscSFNode *roots; 1563f5bf2dbfSMichael Lange PetscSFNode *rootNodes, *leafNodes, *pointRemote; 156423193802SMatthew G. Knepley Vec shifts; 1565cae3e4f3SLawrence Mitchell const PetscInt numShifts = 13759; 156623193802SMatthew G. Knepley const PetscScalar *shift = NULL; 156723193802SMatthew G. Knepley const PetscBool shiftDebug = PETSC_FALSE; 156898ba2d7fSLawrence Mitchell PetscBool balance; 1569f5bf2dbfSMichael Lange 1570f5bf2dbfSMichael Lange PetscFunctionBegin; 1571f5bf2dbfSMichael Lange PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 15729566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject) dm), &rank)); 15739566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject) dm), &size)); 15749566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DMPLEX_CreatePointSF,dm,0,0,0)); 1575f5bf2dbfSMichael Lange 15769566063dSJacob Faibussowitsch PetscCall(DMPlexGetPartitionBalance(dm, &balance)); 15779566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(migrationSF, &nroots, &nleaves, &leaves, &roots)); 15789566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(nroots, &rootNodes, nleaves, &leafNodes)); 1579f5bf2dbfSMichael Lange if (ownership) { 1580fc02256fSLawrence Mitchell MPI_Op op; 1581fc02256fSLawrence Mitchell MPI_Datatype datatype; 1582fc02256fSLawrence Mitchell Petsc3Int *rootVote = NULL, *leafVote = NULL; 158323193802SMatthew G. Knepley /* If balancing, we compute a random cyclic shift of the rank for each remote point. That way, the max will evenly distribute among ranks. */ 158498ba2d7fSLawrence Mitchell if (balance) { 158523193802SMatthew G. Knepley PetscRandom r; 158623193802SMatthew G. Knepley 15879566063dSJacob Faibussowitsch PetscCall(PetscRandomCreate(PETSC_COMM_SELF, &r)); 15889566063dSJacob Faibussowitsch PetscCall(PetscRandomSetInterval(r, 0, 2467*size)); 15899566063dSJacob Faibussowitsch PetscCall(VecCreate(PETSC_COMM_SELF, &shifts)); 15909566063dSJacob Faibussowitsch PetscCall(VecSetSizes(shifts, numShifts, numShifts)); 15919566063dSJacob Faibussowitsch PetscCall(VecSetType(shifts, VECSTANDARD)); 15929566063dSJacob Faibussowitsch PetscCall(VecSetRandom(shifts, r)); 15939566063dSJacob Faibussowitsch PetscCall(PetscRandomDestroy(&r)); 15949566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(shifts, &shift)); 159523193802SMatthew G. Knepley } 159623193802SMatthew G. Knepley 15979566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nroots, &rootVote)); 15989566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nleaves, &leafVote)); 159923193802SMatthew G. Knepley /* Point ownership vote: Process with highest rank owns shared points */ 1600f5bf2dbfSMichael Lange for (p = 0; p < nleaves; ++p) { 160123193802SMatthew G. Knepley if (shiftDebug) { 160263a3b9bcSJacob Faibussowitsch PetscCall(PetscSynchronizedPrintf(PetscObjectComm((PetscObject) dm), "[%d] Point %" PetscInt_FMT " RemotePoint %" PetscInt_FMT " Shift %" PetscInt_FMT " MyRank %" PetscInt_FMT "\n", rank, leaves ? leaves[p] : p, roots[p].index, (PetscInt) PetscRealPart(shift[roots[p].index%numShifts]), (rank + (shift ? (PetscInt) PetscRealPart(shift[roots[p].index%numShifts]) : 0))%size)); 160323193802SMatthew G. Knepley } 1604f5bf2dbfSMichael Lange /* Either put in a bid or we know we own it */ 1605fc02256fSLawrence Mitchell leafVote[p].vote = (rank + (shift ? (PetscInt) PetscRealPart(shift[roots[p].index%numShifts]) : 0))%size; 1606fc02256fSLawrence Mitchell leafVote[p].rank = rank; 1607fc02256fSLawrence Mitchell leafVote[p].index = p; 1608f5bf2dbfSMichael Lange } 1609f5bf2dbfSMichael Lange for (p = 0; p < nroots; p++) { 16101627f6ccSMichael Lange /* Root must not participate in the reduction, flag so that MAXLOC does not use */ 1611fc02256fSLawrence Mitchell rootVote[p].vote = -3; 1612fc02256fSLawrence Mitchell rootVote[p].rank = -3; 1613fc02256fSLawrence Mitchell rootVote[p].index = -3; 1614f5bf2dbfSMichael Lange } 16159566063dSJacob Faibussowitsch PetscCallMPI(MPI_Type_contiguous(3, MPIU_INT, &datatype)); 16169566063dSJacob Faibussowitsch PetscCallMPI(MPI_Type_commit(&datatype)); 16179566063dSJacob Faibussowitsch PetscCallMPI(MPI_Op_create(&MaxLocCarry, 1, &op)); 16189566063dSJacob Faibussowitsch PetscCall(PetscSFReduceBegin(migrationSF, datatype, leafVote, rootVote, op)); 16199566063dSJacob Faibussowitsch PetscCall(PetscSFReduceEnd(migrationSF, datatype, leafVote, rootVote, op)); 16209566063dSJacob Faibussowitsch PetscCallMPI(MPI_Op_free(&op)); 16219566063dSJacob Faibussowitsch PetscCallMPI(MPI_Type_free(&datatype)); 1622c091126eSLawrence Mitchell for (p = 0; p < nroots; p++) { 1623fc02256fSLawrence Mitchell rootNodes[p].rank = rootVote[p].rank; 1624fc02256fSLawrence Mitchell rootNodes[p].index = rootVote[p].index; 1625c091126eSLawrence Mitchell } 16269566063dSJacob Faibussowitsch PetscCall(PetscFree(leafVote)); 16279566063dSJacob Faibussowitsch PetscCall(PetscFree(rootVote)); 1628f5bf2dbfSMichael Lange } else { 1629f5bf2dbfSMichael Lange for (p = 0; p < nroots; p++) { 1630f5bf2dbfSMichael Lange rootNodes[p].index = -1; 1631f5bf2dbfSMichael Lange rootNodes[p].rank = rank; 1632fc02256fSLawrence Mitchell } 1633f5bf2dbfSMichael Lange for (p = 0; p < nleaves; p++) { 1634f5bf2dbfSMichael Lange /* Write new local id into old location */ 1635f5bf2dbfSMichael Lange if (roots[p].rank == rank) { 16366462276dSToby Isaac rootNodes[roots[p].index].index = leaves ? leaves[p] : p; 1637f5bf2dbfSMichael Lange } 1638f5bf2dbfSMichael Lange } 1639f5bf2dbfSMichael Lange } 16409566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(migrationSF, MPIU_2INT, rootNodes, leafNodes,MPI_REPLACE)); 16419566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(migrationSF, MPIU_2INT, rootNodes, leafNodes,MPI_REPLACE)); 1642f5bf2dbfSMichael Lange 164323193802SMatthew G. Knepley for (npointLeaves = 0, p = 0; p < nleaves; p++) { 1644b0e1264bSMatthew G. Knepley if (leafNodes[p].rank != rank) npointLeaves++; 164523193802SMatthew G. Knepley } 16469566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(npointLeaves, &pointLocal)); 16479566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(npointLeaves, &pointRemote)); 1648f5bf2dbfSMichael Lange for (idx = 0, p = 0; p < nleaves; p++) { 1649b0e1264bSMatthew G. Knepley if (leafNodes[p].rank != rank) { 16503618482eSVaclav Hapla /* Note that pointLocal is automatically sorted as it is sublist of 0, ..., nleaves-1 */ 1651f5bf2dbfSMichael Lange pointLocal[idx] = p; 1652f5bf2dbfSMichael Lange pointRemote[idx] = leafNodes[p]; 1653f5bf2dbfSMichael Lange idx++; 1654f5bf2dbfSMichael Lange } 1655f5bf2dbfSMichael Lange } 165623193802SMatthew G. Knepley if (shift) { 16579566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(shifts, &shift)); 16589566063dSJacob Faibussowitsch PetscCall(VecDestroy(&shifts)); 165923193802SMatthew G. Knepley } 16609566063dSJacob Faibussowitsch if (shiftDebug) PetscCall(PetscSynchronizedFlush(PetscObjectComm((PetscObject) dm), PETSC_STDOUT)); 16619566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(PetscObjectComm((PetscObject) dm), pointSF)); 16629566063dSJacob Faibussowitsch PetscCall(PetscSFSetFromOptions(*pointSF)); 16639566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(*pointSF, nleaves, npointLeaves, pointLocal, PETSC_OWN_POINTER, pointRemote, PETSC_OWN_POINTER)); 16649566063dSJacob Faibussowitsch PetscCall(PetscFree2(rootNodes, leafNodes)); 16659566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DMPLEX_CreatePointSF,dm,0,0,0)); 16666c1ef331SVaclav Hapla if (PetscDefined(USE_DEBUG)) PetscCall(DMPlexCheckPointSF(dm, *pointSF)); 1667f5bf2dbfSMichael Lange PetscFunctionReturn(0); 1668f5bf2dbfSMichael Lange } 1669f5bf2dbfSMichael Lange 167015078cd4SMichael Lange /*@C 167115078cd4SMichael Lange DMPlexMigrate - Migrates internal DM data over the supplied star forest 167215078cd4SMichael Lange 1673d083f849SBarry Smith Collective on dm 167483655b49SVáclav Hapla 1675064ec1f3Sprj- Input Parameters: 167615078cd4SMichael Lange + dm - The source DMPlex object 1677d8d19677SJose E. Roman - sf - The star forest communication context describing the migration pattern 167815078cd4SMichael Lange 167915078cd4SMichael Lange Output Parameter: 1680d8d19677SJose E. Roman . targetDM - The target DMPlex object 168115078cd4SMichael Lange 1682b9f40539SMichael Lange Level: intermediate 168315078cd4SMichael Lange 1684db781477SPatrick Sanan .seealso: `DMPlexDistribute()`, `DMPlexDistributeOverlap()` 168515078cd4SMichael Lange @*/ 1686b9f40539SMichael Lange PetscErrorCode DMPlexMigrate(DM dm, PetscSF sf, DM targetDM) 168715078cd4SMichael Lange { 1688b9f40539SMichael Lange MPI_Comm comm; 1689cc1750acSStefano Zampini PetscInt dim, cdim, nroots; 1690b9f40539SMichael Lange PetscSF sfPoint; 169115078cd4SMichael Lange ISLocalToGlobalMapping ltogMigration; 1692ac04eaf7SToby Isaac ISLocalToGlobalMapping ltogOriginal = NULL; 169315078cd4SMichael Lange 169415078cd4SMichael Lange PetscFunctionBegin; 169515078cd4SMichael Lange PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 16969566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DMPLEX_Migrate, dm, 0, 0, 0)); 16979566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject) dm, &comm)); 16989566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 16999566063dSJacob Faibussowitsch PetscCall(DMSetDimension(targetDM, dim)); 17009566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDim(dm, &cdim)); 17019566063dSJacob Faibussowitsch PetscCall(DMSetCoordinateDim(targetDM, cdim)); 170215078cd4SMichael Lange 1703bfb0467fSMichael Lange /* Check for a one-to-all distribution pattern */ 17049566063dSJacob Faibussowitsch PetscCall(DMGetPointSF(dm, &sfPoint)); 17059566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(sfPoint, &nroots, NULL, NULL, NULL)); 1706bfb0467fSMichael Lange if (nroots >= 0) { 1707b9f40539SMichael Lange IS isOriginal; 1708ac04eaf7SToby Isaac PetscInt n, size, nleaves; 1709ac04eaf7SToby Isaac PetscInt *numbering_orig, *numbering_new; 1710367003a6SStefano Zampini 1711b9f40539SMichael Lange /* Get the original point numbering */ 17129566063dSJacob Faibussowitsch PetscCall(DMPlexCreatePointNumbering(dm, &isOriginal)); 17139566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingCreateIS(isOriginal, <ogOriginal)); 17149566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingGetSize(ltogOriginal, &size)); 17159566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingGetBlockIndices(ltogOriginal, (const PetscInt**)&numbering_orig)); 1716b9f40539SMichael Lange /* Convert to positive global numbers */ 1717b9f40539SMichael Lange for (n=0; n<size; n++) {if (numbering_orig[n] < 0) numbering_orig[n] = -(numbering_orig[n]+1);} 1718b9f40539SMichael Lange /* Derive the new local-to-global mapping from the old one */ 17199566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(sf, NULL, &nleaves, NULL, NULL)); 17209566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nleaves, &numbering_new)); 17219566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(sf, MPIU_INT, numbering_orig, numbering_new,MPI_REPLACE)); 17229566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(sf, MPIU_INT, numbering_orig, numbering_new,MPI_REPLACE)); 17239566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingCreate(comm, 1, nleaves, numbering_new, PETSC_OWN_POINTER, <ogMigration)); 17249566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingRestoreIndices(ltogOriginal, (const PetscInt**)&numbering_orig)); 17259566063dSJacob Faibussowitsch PetscCall(ISDestroy(&isOriginal)); 172615078cd4SMichael Lange } else { 1727bfb0467fSMichael Lange /* One-to-all distribution pattern: We can derive LToG from SF */ 17289566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingCreateSF(sf, 0, <ogMigration)); 172915078cd4SMichael Lange } 1730a5a902f7SVaclav Hapla PetscCall(PetscObjectSetName((PetscObject)ltogMigration, "Point renumbering for DM migration")); 1731a5a902f7SVaclav Hapla PetscCall(ISLocalToGlobalMappingViewFromOptions(ltogMigration, (PetscObject)dm, "-partition_view")); 173215078cd4SMichael Lange /* Migrate DM data to target DM */ 17339566063dSJacob Faibussowitsch PetscCall(DMPlexDistributeCones(dm, sf, ltogOriginal, ltogMigration, targetDM)); 17349566063dSJacob Faibussowitsch PetscCall(DMPlexDistributeLabels(dm, sf, targetDM)); 17359566063dSJacob Faibussowitsch PetscCall(DMPlexDistributeCoordinates(dm, sf, targetDM)); 17369566063dSJacob Faibussowitsch PetscCall(DMPlexDistributeSetupTree(dm, sf, ltogOriginal, ltogMigration, targetDM)); 17379566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingDestroy(<ogOriginal)); 17389566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingDestroy(<ogMigration)); 17399566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DMPLEX_Migrate, dm, 0, 0, 0)); 174015078cd4SMichael Lange PetscFunctionReturn(0); 174115078cd4SMichael Lange } 174215078cd4SMichael Lange 17433b8f15a2SMatthew G. Knepley /*@C 174470034214SMatthew G. Knepley DMPlexDistribute - Distributes the mesh and any associated sections. 174570034214SMatthew G. Knepley 1746d083f849SBarry Smith Collective on dm 174770034214SMatthew G. Knepley 1748064ec1f3Sprj- Input Parameters: 174970034214SMatthew G. Knepley + dm - The original DMPlex object 175070034214SMatthew G. Knepley - overlap - The overlap of partitions, 0 is the default 175170034214SMatthew G. Knepley 1752064ec1f3Sprj- Output Parameters: 1753f4ae5380SJed Brown + sf - The PetscSF used for point distribution, or NULL if not needed 1754f4ae5380SJed Brown - dmParallel - The distributed DMPlex object 175570034214SMatthew G. Knepley 1756f4ae5380SJed Brown Note: If the mesh was not distributed, the output dmParallel will be NULL. 175770034214SMatthew G. Knepley 1758b0441da4SMatthew G. Knepley The user can control the definition of adjacency for the mesh using DMSetAdjacency(). They should choose the combination appropriate for the function 175970034214SMatthew G. Knepley representation on the mesh. 176070034214SMatthew G. Knepley 176170034214SMatthew G. Knepley Level: intermediate 176270034214SMatthew G. Knepley 1763db781477SPatrick Sanan .seealso: `DMPlexCreate()`, `DMSetAdjacency()`, `DMPlexGetOverlap()` 176470034214SMatthew G. Knepley @*/ 176580cf41d5SMatthew G. Knepley PetscErrorCode DMPlexDistribute(DM dm, PetscInt overlap, PetscSF *sf, DM *dmParallel) 176670034214SMatthew G. Knepley { 176770034214SMatthew G. Knepley MPI_Comm comm; 176815078cd4SMichael Lange PetscPartitioner partitioner; 1769f8987ae8SMichael Lange IS cellPart; 1770f8987ae8SMichael Lange PetscSection cellPartSection; 1771cf86098cSMatthew G. Knepley DM dmCoord; 1772f8987ae8SMichael Lange DMLabel lblPartition, lblMigration; 1773874ddda9SLisandro Dalcin PetscSF sfMigration, sfStratified, sfPoint; 177498ba2d7fSLawrence Mitchell PetscBool flg, balance; 1775874ddda9SLisandro Dalcin PetscMPIInt rank, size; 177670034214SMatthew G. Knepley 177770034214SMatthew G. Knepley PetscFunctionBegin; 177870034214SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 1779d5c515a1SMatthew G. Knepley PetscValidLogicalCollectiveInt(dm, overlap, 2); 1780d5c515a1SMatthew G. Knepley if (sf) PetscValidPointer(sf,3); 1781d5c515a1SMatthew G. Knepley PetscValidPointer(dmParallel,4); 178270034214SMatthew G. Knepley 17830c86c063SLisandro Dalcin if (sf) *sf = NULL; 17840c86c063SLisandro Dalcin *dmParallel = NULL; 17859566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)dm,&comm)); 17869566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 17879566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 17880c86c063SLisandro Dalcin if (size == 1) PetscFunctionReturn(0); 178970034214SMatthew G. Knepley 17909566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DMPLEX_Distribute,dm,0,0,0)); 179115078cd4SMichael Lange /* Create cell partition */ 17929566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DMPLEX_Partition,dm,0,0,0)); 17939566063dSJacob Faibussowitsch PetscCall(PetscSectionCreate(comm, &cellPartSection)); 17949566063dSJacob Faibussowitsch PetscCall(DMPlexGetPartitioner(dm, &partitioner)); 17959566063dSJacob Faibussowitsch PetscCall(PetscPartitionerDMPlexPartition(partitioner, dm, NULL, cellPartSection, &cellPart)); 17969566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DMPLEX_PartSelf,dm,0,0,0)); 1797f8987ae8SMichael Lange { 1798f8987ae8SMichael Lange /* Convert partition to DMLabel */ 1799825f8a23SLisandro Dalcin IS is; 1800825f8a23SLisandro Dalcin PetscHSetI ht; 1801f8987ae8SMichael Lange const PetscInt *points; 18028e330a33SStefano Zampini PetscInt *iranks; 18038e330a33SStefano Zampini PetscInt pStart, pEnd, proc, npoints, poff = 0, nranks; 1804825f8a23SLisandro Dalcin 18059566063dSJacob Faibussowitsch PetscCall(DMLabelCreate(PETSC_COMM_SELF, "Point Partition", &lblPartition)); 1806825f8a23SLisandro Dalcin /* Preallocate strata */ 18079566063dSJacob Faibussowitsch PetscCall(PetscHSetICreate(&ht)); 18089566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(cellPartSection, &pStart, &pEnd)); 1809825f8a23SLisandro Dalcin for (proc = pStart; proc < pEnd; proc++) { 18109566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(cellPartSection, proc, &npoints)); 18119566063dSJacob Faibussowitsch if (npoints) PetscCall(PetscHSetIAdd(ht, proc)); 1812825f8a23SLisandro Dalcin } 18139566063dSJacob Faibussowitsch PetscCall(PetscHSetIGetSize(ht, &nranks)); 18149566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nranks, &iranks)); 18159566063dSJacob Faibussowitsch PetscCall(PetscHSetIGetElems(ht, &poff, iranks)); 18169566063dSJacob Faibussowitsch PetscCall(PetscHSetIDestroy(&ht)); 18179566063dSJacob Faibussowitsch PetscCall(DMLabelAddStrata(lblPartition, nranks, iranks)); 18189566063dSJacob Faibussowitsch PetscCall(PetscFree(iranks)); 1819825f8a23SLisandro Dalcin /* Inline DMPlexPartitionLabelClosure() */ 18209566063dSJacob Faibussowitsch PetscCall(ISGetIndices(cellPart, &points)); 18219566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(cellPartSection, &pStart, &pEnd)); 1822f8987ae8SMichael Lange for (proc = pStart; proc < pEnd; proc++) { 18239566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(cellPartSection, proc, &npoints)); 1824825f8a23SLisandro Dalcin if (!npoints) continue; 18259566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(cellPartSection, proc, &poff)); 18269566063dSJacob Faibussowitsch PetscCall(DMPlexClosurePoints_Private(dm, npoints, points+poff, &is)); 18279566063dSJacob Faibussowitsch PetscCall(DMLabelSetStratumIS(lblPartition, proc, is)); 18289566063dSJacob Faibussowitsch PetscCall(ISDestroy(&is)); 1829f8987ae8SMichael Lange } 18309566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(cellPart, &points)); 1831f8987ae8SMichael Lange } 18329566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DMPLEX_PartSelf,dm,0,0,0)); 18336e203dd9SStefano Zampini 18349566063dSJacob Faibussowitsch PetscCall(DMLabelCreate(PETSC_COMM_SELF, "Point migration", &lblMigration)); 18359566063dSJacob Faibussowitsch PetscCall(DMPlexPartitionLabelInvert(dm, lblPartition, NULL, lblMigration)); 18369566063dSJacob Faibussowitsch PetscCall(DMPlexPartitionLabelCreateSF(dm, lblMigration, &sfMigration)); 18379566063dSJacob Faibussowitsch PetscCall(DMPlexStratifyMigrationSF(dm, sfMigration, &sfStratified)); 18389566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&sfMigration)); 183943f7d02bSMichael Lange sfMigration = sfStratified; 18409566063dSJacob Faibussowitsch PetscCall(PetscSFSetUp(sfMigration)); 18419566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DMPLEX_Partition,dm,0,0,0)); 18429566063dSJacob Faibussowitsch PetscCall(PetscOptionsHasName(((PetscObject) dm)->options,((PetscObject) dm)->prefix, "-partition_view", &flg)); 184370034214SMatthew G. Knepley if (flg) { 18449566063dSJacob Faibussowitsch PetscCall(DMLabelView(lblPartition, PETSC_VIEWER_STDOUT_(comm))); 18459566063dSJacob Faibussowitsch PetscCall(PetscSFView(sfMigration, PETSC_VIEWER_STDOUT_(comm))); 184670034214SMatthew G. Knepley } 1847f8987ae8SMichael Lange 184815078cd4SMichael Lange /* Create non-overlapping parallel DM and migrate internal data */ 18499566063dSJacob Faibussowitsch PetscCall(DMPlexCreate(comm, dmParallel)); 18509566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject) *dmParallel, "Parallel Mesh")); 18519566063dSJacob Faibussowitsch PetscCall(DMPlexMigrate(dm, sfMigration, *dmParallel)); 185270034214SMatthew G. Knepley 1853a157612eSMichael Lange /* Build the point SF without overlap */ 18549566063dSJacob Faibussowitsch PetscCall(DMPlexGetPartitionBalance(dm, &balance)); 18559566063dSJacob Faibussowitsch PetscCall(DMPlexSetPartitionBalance(*dmParallel, balance)); 18569566063dSJacob Faibussowitsch PetscCall(DMPlexCreatePointSF(*dmParallel, sfMigration, PETSC_TRUE, &sfPoint)); 18579566063dSJacob Faibussowitsch PetscCall(DMSetPointSF(*dmParallel, sfPoint)); 18589566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDM(*dmParallel, &dmCoord)); 18599566063dSJacob Faibussowitsch if (dmCoord) PetscCall(DMSetPointSF(dmCoord, sfPoint)); 18609566063dSJacob Faibussowitsch if (flg) PetscCall(PetscSFView(sfPoint, NULL)); 186170034214SMatthew G. Knepley 1862a157612eSMichael Lange if (overlap > 0) { 186315078cd4SMichael Lange DM dmOverlap; 186457f290daSMatthew G. Knepley PetscInt nroots, nleaves, noldleaves, l; 186557f290daSMatthew G. Knepley const PetscInt *oldLeaves; 186657f290daSMatthew G. Knepley PetscSFNode *newRemote, *permRemote; 186715078cd4SMichael Lange const PetscSFNode *oldRemote; 186815078cd4SMichael Lange PetscSF sfOverlap, sfOverlapPoint; 1869524e35f8SStefano Zampini 1870a157612eSMichael Lange /* Add the partition overlap to the distributed DM */ 18719566063dSJacob Faibussowitsch PetscCall(DMPlexDistributeOverlap(*dmParallel, overlap, &sfOverlap, &dmOverlap)); 18729566063dSJacob Faibussowitsch PetscCall(DMDestroy(dmParallel)); 1873a157612eSMichael Lange *dmParallel = dmOverlap; 1874c389ea9fSToby Isaac if (flg) { 18759566063dSJacob Faibussowitsch PetscCall(PetscPrintf(comm, "Overlap Migration SF:\n")); 18769566063dSJacob Faibussowitsch PetscCall(PetscSFView(sfOverlap, NULL)); 1877c389ea9fSToby Isaac } 187843331d4aSMichael Lange 1879f8987ae8SMichael Lange /* Re-map the migration SF to establish the full migration pattern */ 18809566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(sfMigration, &nroots, &noldleaves, &oldLeaves, &oldRemote)); 18819566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(sfOverlap, NULL, &nleaves, NULL, NULL)); 18829566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nleaves, &newRemote)); 188357f290daSMatthew G. Knepley /* oldRemote: original root point mapping to original leaf point 188457f290daSMatthew G. Knepley newRemote: original leaf point mapping to overlapped leaf point */ 188557f290daSMatthew G. Knepley if (oldLeaves) { 188673e69a6aSMatthew G. Knepley /* After stratification, the migration remotes may not be in root (canonical) order, so we reorder using the leaf numbering */ 18879566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(noldleaves, &permRemote)); 188857f290daSMatthew G. Knepley for (l = 0; l < noldleaves; ++l) permRemote[oldLeaves[l]] = oldRemote[l]; 188957f290daSMatthew G. Knepley oldRemote = permRemote; 189057f290daSMatthew G. Knepley } 18919566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(sfOverlap, MPIU_2INT, oldRemote, newRemote,MPI_REPLACE)); 18929566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(sfOverlap, MPIU_2INT, oldRemote, newRemote,MPI_REPLACE)); 18939566063dSJacob Faibussowitsch if (oldLeaves) PetscCall(PetscFree(oldRemote)); 18949566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(comm, &sfOverlapPoint)); 18959566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(sfOverlapPoint, nroots, nleaves, NULL, PETSC_OWN_POINTER, newRemote, PETSC_OWN_POINTER)); 18969566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&sfOverlap)); 18979566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&sfMigration)); 189815078cd4SMichael Lange sfMigration = sfOverlapPoint; 1899c389ea9fSToby Isaac } 1900bf5244c7SMatthew G. Knepley /* Cleanup Partition */ 19019566063dSJacob Faibussowitsch PetscCall(DMLabelDestroy(&lblPartition)); 19029566063dSJacob Faibussowitsch PetscCall(DMLabelDestroy(&lblMigration)); 19039566063dSJacob Faibussowitsch PetscCall(PetscSectionDestroy(&cellPartSection)); 19049566063dSJacob Faibussowitsch PetscCall(ISDestroy(&cellPart)); 190545480ffeSMatthew G. Knepley /* Copy discretization */ 19069566063dSJacob Faibussowitsch PetscCall(DMCopyDisc(dm, *dmParallel)); 190766fe0bfeSMatthew G. Knepley /* Create sfNatural */ 190866fe0bfeSMatthew G. Knepley if (dm->useNatural) { 190966fe0bfeSMatthew G. Knepley PetscSection section; 191066fe0bfeSMatthew G. Knepley 19119566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, §ion)); 19129566063dSJacob Faibussowitsch PetscCall(DMPlexCreateGlobalToNaturalSF(*dmParallel, section, sfMigration, &(*dmParallel)->sfNatural)); 19139566063dSJacob Faibussowitsch PetscCall(DMSetUseNatural(*dmParallel, PETSC_TRUE)); 191466fe0bfeSMatthew G. Knepley } 19155de52c6dSVaclav Hapla PetscCall(DMPlexCopy_Internal(dm, PETSC_TRUE, PETSC_FALSE, *dmParallel)); 1916721cbd76SMatthew G. Knepley /* Cleanup */ 1917f8987ae8SMichael Lange if (sf) {*sf = sfMigration;} 19189566063dSJacob Faibussowitsch else PetscCall(PetscSFDestroy(&sfMigration)); 19199566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&sfPoint)); 19209566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DMPLEX_Distribute,dm,0,0,0)); 192170034214SMatthew G. Knepley PetscFunctionReturn(0); 192270034214SMatthew G. Knepley } 1923a157612eSMichael Lange 1924a157612eSMichael Lange /*@C 192524cc2ca5SMatthew G. Knepley DMPlexDistributeOverlap - Add partition overlap to a distributed non-overlapping DM. 1926a157612eSMichael Lange 1927d083f849SBarry Smith Collective on dm 1928a157612eSMichael Lange 1929064ec1f3Sprj- Input Parameters: 1930064ec1f3Sprj- + dm - The non-overlapping distributed DMPlex object 193157fe9a49SVaclav Hapla - overlap - The overlap of partitions (the same on all ranks) 1932a157612eSMichael Lange 1933064ec1f3Sprj- Output Parameters: 1934a157612eSMichael Lange + sf - The PetscSF used for point distribution 1935a157612eSMichael Lange - dmOverlap - The overlapping distributed DMPlex object, or NULL 1936a157612eSMichael Lange 1937dccdeccaSVaclav Hapla Notes: 1938dccdeccaSVaclav Hapla If the mesh was not distributed, the return value is NULL. 1939a157612eSMichael Lange 1940b0441da4SMatthew G. Knepley The user can control the definition of adjacency for the mesh using DMSetAdjacency(). They should choose the combination appropriate for the function 1941a157612eSMichael Lange representation on the mesh. 1942a157612eSMichael Lange 1943c506a872SMatthew G. Knepley Options Database Keys: 1944c506a872SMatthew G. Knepley + -dm_plex_overlap_labels <name1,name2,...> - List of overlap label names 1945c506a872SMatthew G. Knepley . -dm_plex_overlap_values <int1,int2,...> - List of overlap label values 1946c506a872SMatthew G. Knepley . -dm_plex_overlap_exclude_label <name> - Label used to exclude points from overlap 1947c506a872SMatthew G. Knepley - -dm_plex_overlap_exclude_value <int> - Label value used to exclude points from overlap 1948c506a872SMatthew G. Knepley 1949dccdeccaSVaclav Hapla Level: advanced 1950a157612eSMichael Lange 1951db781477SPatrick Sanan .seealso: `DMPlexCreate()`, `DMSetAdjacency()`, `DMPlexDistribute()`, `DMPlexCreateOverlapLabel()`, `DMPlexGetOverlap()` 1952a157612eSMichael Lange @*/ 1953b9f40539SMichael Lange PetscErrorCode DMPlexDistributeOverlap(DM dm, PetscInt overlap, PetscSF *sf, DM *dmOverlap) 1954a157612eSMichael Lange { 1955c506a872SMatthew G. Knepley DM_Plex *mesh = (DM_Plex *) dm->data; 1956a157612eSMichael Lange MPI_Comm comm; 19573567eaeeSMatthew G. Knepley PetscMPIInt size, rank; 1958a157612eSMichael Lange PetscSection rootSection, leafSection; 1959a157612eSMichael Lange IS rootrank, leafrank; 1960cf86098cSMatthew G. Knepley DM dmCoord; 1961a9f1d5b2SMichael Lange DMLabel lblOverlap; 1962f5bf2dbfSMichael Lange PetscSF sfOverlap, sfStratified, sfPoint; 1963a157612eSMichael Lange 1964a157612eSMichael Lange PetscFunctionBegin; 1965a157612eSMichael Lange PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 196657fe9a49SVaclav Hapla PetscValidLogicalCollectiveInt(dm, overlap, 2); 1967a157612eSMichael Lange if (sf) PetscValidPointer(sf, 3); 1968a157612eSMichael Lange PetscValidPointer(dmOverlap, 4); 1969a157612eSMichael Lange 19700c86c063SLisandro Dalcin if (sf) *sf = NULL; 19710c86c063SLisandro Dalcin *dmOverlap = NULL; 19729566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)dm,&comm)); 19739566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 19749566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 19750c86c063SLisandro Dalcin if (size == 1) PetscFunctionReturn(0); 1976c506a872SMatthew G. Knepley { 1977c506a872SMatthew G. Knepley // We need to get options for the _already_distributed mesh, so it must be done here 1978c506a872SMatthew G. Knepley PetscInt overlap; 1979c506a872SMatthew G. Knepley const char *prefix; 1980c506a872SMatthew G. Knepley char oldPrefix[PETSC_MAX_PATH_LEN]; 1981a157612eSMichael Lange 1982c506a872SMatthew G. Knepley oldPrefix[0] = '\0'; 1983c506a872SMatthew G. Knepley PetscCall(PetscObjectGetOptionsPrefix((PetscObject) dm, &prefix)); 1984c506a872SMatthew G. Knepley PetscCall(PetscStrcpy(oldPrefix, prefix)); 1985c506a872SMatthew G. Knepley PetscCall(PetscObjectAppendOptionsPrefix((PetscObject) dm, "dist_")); 1986c506a872SMatthew G. Knepley PetscCall(DMPlexGetOverlap(dm, &overlap)); 1987c506a872SMatthew G. Knepley PetscObjectOptionsBegin((PetscObject) dm); 1988c506a872SMatthew G. Knepley PetscCall(DMSetFromOptions_Overlap_Plex(PetscOptionsObject, dm, &overlap)); 1989c506a872SMatthew G. Knepley PetscOptionsEnd(); 1990c506a872SMatthew G. Knepley PetscCall(PetscObjectSetOptionsPrefix((PetscObject) dm, oldPrefix[0] == '\0' ? NULL : oldPrefix)); 1991c506a872SMatthew G. Knepley } 19929566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DMPLEX_DistributeOverlap, dm, 0, 0, 0)); 1993a157612eSMichael Lange /* Compute point overlap with neighbouring processes on the distributed DM */ 19949566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DMPLEX_Partition,dm,0,0,0)); 19959566063dSJacob Faibussowitsch PetscCall(PetscSectionCreate(comm, &rootSection)); 19969566063dSJacob Faibussowitsch PetscCall(PetscSectionCreate(comm, &leafSection)); 19979566063dSJacob Faibussowitsch PetscCall(DMPlexDistributeOwnership(dm, rootSection, &rootrank, leafSection, &leafrank)); 1998c506a872SMatthew G. Knepley if (mesh->numOvLabels) PetscCall(DMPlexCreateOverlapLabelFromLabels(dm, mesh->numOvLabels, mesh->ovLabels, mesh->ovValues, mesh->numOvExLabels, mesh->ovExLabels, mesh->ovExValues, rootSection, rootrank, leafSection, leafrank, &lblOverlap)); 1999c506a872SMatthew G. Knepley else PetscCall(DMPlexCreateOverlapLabel(dm, overlap, rootSection, rootrank, leafSection, leafrank, &lblOverlap)); 2000a9f1d5b2SMichael Lange /* Convert overlap label to stratified migration SF */ 20019566063dSJacob Faibussowitsch PetscCall(DMPlexPartitionLabelCreateSF(dm, lblOverlap, &sfOverlap)); 20029566063dSJacob Faibussowitsch PetscCall(DMPlexStratifyMigrationSF(dm, sfOverlap, &sfStratified)); 20039566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&sfOverlap)); 2004a9f1d5b2SMichael Lange sfOverlap = sfStratified; 20059566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject) sfOverlap, "Overlap SF")); 20069566063dSJacob Faibussowitsch PetscCall(PetscSFSetFromOptions(sfOverlap)); 2007a9f1d5b2SMichael Lange 20089566063dSJacob Faibussowitsch PetscCall(PetscSectionDestroy(&rootSection)); 20099566063dSJacob Faibussowitsch PetscCall(PetscSectionDestroy(&leafSection)); 20109566063dSJacob Faibussowitsch PetscCall(ISDestroy(&rootrank)); 20119566063dSJacob Faibussowitsch PetscCall(ISDestroy(&leafrank)); 20129566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DMPLEX_Partition,dm,0,0,0)); 2013a157612eSMichael Lange 2014a157612eSMichael Lange /* Build the overlapping DM */ 20159566063dSJacob Faibussowitsch PetscCall(DMPlexCreate(comm, dmOverlap)); 20169566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject) *dmOverlap, "Parallel Mesh")); 20179566063dSJacob Faibussowitsch PetscCall(DMPlexMigrate(dm, sfOverlap, *dmOverlap)); 2018cb54e036SVaclav Hapla /* Store the overlap in the new DM */ 201960667520SVaclav Hapla PetscCall(DMPlexSetOverlap_Plex(*dmOverlap, dm, overlap)); 2020f5bf2dbfSMichael Lange /* Build the new point SF */ 20219566063dSJacob Faibussowitsch PetscCall(DMPlexCreatePointSF(*dmOverlap, sfOverlap, PETSC_FALSE, &sfPoint)); 20229566063dSJacob Faibussowitsch PetscCall(DMSetPointSF(*dmOverlap, sfPoint)); 20239566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDM(*dmOverlap, &dmCoord)); 20249566063dSJacob Faibussowitsch if (dmCoord) PetscCall(DMSetPointSF(dmCoord, sfPoint)); 20256858538eSMatthew G. Knepley PetscCall(DMGetCellCoordinateDM(*dmOverlap, &dmCoord)); 20266858538eSMatthew G. Knepley if (dmCoord) PetscCall(DMSetPointSF(dmCoord, sfPoint)); 20279566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&sfPoint)); 2028a157612eSMichael Lange /* Cleanup overlap partition */ 20299566063dSJacob Faibussowitsch PetscCall(DMLabelDestroy(&lblOverlap)); 2030a9f1d5b2SMichael Lange if (sf) *sf = sfOverlap; 20319566063dSJacob Faibussowitsch else PetscCall(PetscSFDestroy(&sfOverlap)); 20329566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DMPLEX_DistributeOverlap, dm, 0, 0, 0)); 2033a157612eSMichael Lange PetscFunctionReturn(0); 2034a157612eSMichael Lange } 20356462276dSToby Isaac 2036cb54e036SVaclav Hapla PetscErrorCode DMPlexGetOverlap_Plex(DM dm, PetscInt *overlap) 2037cb54e036SVaclav Hapla { 2038cb54e036SVaclav Hapla DM_Plex *mesh = (DM_Plex*) dm->data; 2039cb54e036SVaclav Hapla 2040cb54e036SVaclav Hapla PetscFunctionBegin; 2041cb54e036SVaclav Hapla *overlap = mesh->overlap; 2042cb54e036SVaclav Hapla PetscFunctionReturn(0); 2043cb54e036SVaclav Hapla } 2044cb54e036SVaclav Hapla 204560667520SVaclav Hapla PetscErrorCode DMPlexSetOverlap_Plex(DM dm, DM dmSrc, PetscInt overlap) 204660667520SVaclav Hapla { 204760667520SVaclav Hapla DM_Plex *mesh=NULL; 204860667520SVaclav Hapla DM_Plex *meshSrc=NULL; 204960667520SVaclav Hapla 205060667520SVaclav Hapla PetscFunctionBegin; 205160667520SVaclav Hapla PetscValidHeaderSpecificType(dm, DM_CLASSID, 1, DMPLEX); 205260667520SVaclav Hapla mesh = (DM_Plex*) dm->data; 205360667520SVaclav Hapla mesh->overlap = overlap; 205460667520SVaclav Hapla if (dmSrc) { 205560667520SVaclav Hapla PetscValidHeaderSpecificType(dmSrc, DM_CLASSID, 2, DMPLEX); 205660667520SVaclav Hapla meshSrc = (DM_Plex*) dmSrc->data; 205760667520SVaclav Hapla mesh->overlap += meshSrc->overlap; 205860667520SVaclav Hapla } 205960667520SVaclav Hapla PetscFunctionReturn(0); 206060667520SVaclav Hapla } 206160667520SVaclav Hapla 2062cb54e036SVaclav Hapla /*@ 2063c506a872SMatthew G. Knepley DMPlexGetOverlap - Get the width of the cell overlap 2064cb54e036SVaclav Hapla 2065cb54e036SVaclav Hapla Not collective 2066cb54e036SVaclav Hapla 2067cb54e036SVaclav Hapla Input Parameter: 2068cb54e036SVaclav Hapla . dm - The DM 2069cb54e036SVaclav Hapla 2070064ec1f3Sprj- Output Parameter: 2071c506a872SMatthew G. Knepley . overlap - the width of the cell overlap 2072cb54e036SVaclav Hapla 2073cb54e036SVaclav Hapla Level: intermediate 2074cb54e036SVaclav Hapla 2075c506a872SMatthew G. Knepley .seealso: `DMPlexSetOverlap()`, `DMPlexDistribute()` 2076cb54e036SVaclav Hapla @*/ 2077cb54e036SVaclav Hapla PetscErrorCode DMPlexGetOverlap(DM dm, PetscInt *overlap) 2078cb54e036SVaclav Hapla { 2079cb54e036SVaclav Hapla PetscFunctionBegin; 2080cb54e036SVaclav Hapla PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 2081c506a872SMatthew G. Knepley PetscValidIntPointer(overlap, 2); 2082cac4c232SBarry Smith PetscUseMethod(dm, "DMPlexGetOverlap_C",(DM,PetscInt*),(dm,overlap)); 2083cb54e036SVaclav Hapla PetscFunctionReturn(0); 2084cb54e036SVaclav Hapla } 2085cb54e036SVaclav Hapla 2086c506a872SMatthew G. Knepley /*@ 2087c506a872SMatthew G. Knepley DMPlexSetOverlap - Set the width of the cell overlap 2088c506a872SMatthew G. Knepley 2089c506a872SMatthew G. Knepley Logically collective 2090c506a872SMatthew G. Knepley 2091c506a872SMatthew G. Knepley Input Parameters: 2092c506a872SMatthew G. Knepley + dm - The DM 2093c506a872SMatthew G. Knepley . dmSrc - The DM that produced this one, or NULL 2094c506a872SMatthew G. Knepley - overlap - the width of the cell overlap 2095c506a872SMatthew G. Knepley 2096c506a872SMatthew G. Knepley Note: 2097c506a872SMatthew G. Knepley The overlap from dmSrc is added to dm 2098c506a872SMatthew G. Knepley 2099c506a872SMatthew G. Knepley Level: intermediate 2100c506a872SMatthew G. Knepley 2101c506a872SMatthew G. Knepley .seealso: `DMPlexGetOverlap()`, `DMPlexDistribute()` 2102c506a872SMatthew G. Knepley @*/ 2103c506a872SMatthew G. Knepley PetscErrorCode DMPlexSetOverlap(DM dm, DM dmSrc, PetscInt overlap) 2104c506a872SMatthew G. Knepley { 2105c506a872SMatthew G. Knepley PetscFunctionBegin; 2106c506a872SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 2107c506a872SMatthew G. Knepley PetscValidLogicalCollectiveInt(dm, overlap, 3); 2108c506a872SMatthew G. Knepley PetscTryMethod(dm, "DMPlexSetOverlap_C",(DM,DM,PetscInt),(dm,dmSrc,overlap)); 2109c506a872SMatthew G. Knepley PetscFunctionReturn(0); 2110c506a872SMatthew G. Knepley } 2111c506a872SMatthew G. Knepley 2112e600fa54SMatthew G. Knepley PetscErrorCode DMPlexDistributeSetDefault_Plex(DM dm, PetscBool dist) 2113e600fa54SMatthew G. Knepley { 2114e600fa54SMatthew G. Knepley DM_Plex *mesh = (DM_Plex *) dm->data; 2115e600fa54SMatthew G. Knepley 2116e600fa54SMatthew G. Knepley PetscFunctionBegin; 2117e600fa54SMatthew G. Knepley mesh->distDefault = dist; 2118e600fa54SMatthew G. Knepley PetscFunctionReturn(0); 2119e600fa54SMatthew G. Knepley } 2120e600fa54SMatthew G. Knepley 2121e600fa54SMatthew G. Knepley /*@ 2122e600fa54SMatthew G. Knepley DMPlexDistributeSetDefault - Set flag indicating whether the DM should be distributed by default 2123e600fa54SMatthew G. Knepley 2124e600fa54SMatthew G. Knepley Logically collective 2125e600fa54SMatthew G. Knepley 2126e600fa54SMatthew G. Knepley Input Parameters: 2127e600fa54SMatthew G. Knepley + dm - The DM 2128e600fa54SMatthew G. Knepley - dist - Flag for distribution 2129e600fa54SMatthew G. Knepley 2130e600fa54SMatthew G. Knepley Level: intermediate 2131e600fa54SMatthew G. Knepley 21329e70506fSSatish Balay .seealso: `DMPlexDistributeGetDefault()`, `DMPlexDistribute()` 2133e600fa54SMatthew G. Knepley @*/ 2134e600fa54SMatthew G. Knepley PetscErrorCode DMPlexDistributeSetDefault(DM dm, PetscBool dist) 2135e600fa54SMatthew G. Knepley { 2136e600fa54SMatthew G. Knepley PetscFunctionBegin; 2137e600fa54SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 2138e600fa54SMatthew G. Knepley PetscValidLogicalCollectiveBool(dm, dist, 2); 2139cac4c232SBarry Smith PetscTryMethod(dm,"DMPlexDistributeSetDefault_C",(DM,PetscBool),(dm,dist)); 2140e600fa54SMatthew G. Knepley PetscFunctionReturn(0); 2141e600fa54SMatthew G. Knepley } 2142e600fa54SMatthew G. Knepley 2143e600fa54SMatthew G. Knepley PetscErrorCode DMPlexDistributeGetDefault_Plex(DM dm, PetscBool *dist) 2144e600fa54SMatthew G. Knepley { 2145e600fa54SMatthew G. Knepley DM_Plex *mesh = (DM_Plex *) dm->data; 2146e600fa54SMatthew G. Knepley 2147e600fa54SMatthew G. Knepley PetscFunctionBegin; 2148e600fa54SMatthew G. Knepley *dist = mesh->distDefault; 2149e600fa54SMatthew G. Knepley PetscFunctionReturn(0); 2150e600fa54SMatthew G. Knepley } 2151e600fa54SMatthew G. Knepley 2152e600fa54SMatthew G. Knepley /*@ 2153e600fa54SMatthew G. Knepley DMPlexDistributeGetDefault - Get flag indicating whether the DM should be distributed by default 2154e600fa54SMatthew G. Knepley 2155e600fa54SMatthew G. Knepley Not collective 2156e600fa54SMatthew G. Knepley 2157e600fa54SMatthew G. Knepley Input Parameter: 2158e600fa54SMatthew G. Knepley . dm - The DM 2159e600fa54SMatthew G. Knepley 2160e600fa54SMatthew G. Knepley Output Parameter: 2161e600fa54SMatthew G. Knepley . dist - Flag for distribution 2162e600fa54SMatthew G. Knepley 2163e600fa54SMatthew G. Knepley Level: intermediate 2164e600fa54SMatthew G. Knepley 21659e70506fSSatish Balay .seealso: `DMPlexDistributeSetDefault()`, `DMPlexDistribute()` 2166e600fa54SMatthew G. Knepley @*/ 2167e600fa54SMatthew G. Knepley PetscErrorCode DMPlexDistributeGetDefault(DM dm, PetscBool *dist) 2168e600fa54SMatthew G. Knepley { 2169e600fa54SMatthew G. Knepley PetscFunctionBegin; 2170e600fa54SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 2171e600fa54SMatthew G. Knepley PetscValidBoolPointer(dist, 2); 2172cac4c232SBarry Smith PetscUseMethod(dm,"DMPlexDistributeGetDefault_C",(DM,PetscBool*),(dm,dist)); 2173e600fa54SMatthew G. Knepley PetscFunctionReturn(0); 2174e600fa54SMatthew G. Knepley } 2175e600fa54SMatthew G. Knepley 21766462276dSToby Isaac /*@C 21776462276dSToby Isaac DMPlexGetGatherDM - Get a copy of the DMPlex that gathers all points on the 21786462276dSToby Isaac root process of the original's communicator. 21796462276dSToby Isaac 2180d083f849SBarry Smith Collective on dm 218183655b49SVáclav Hapla 2182064ec1f3Sprj- Input Parameter: 21836462276dSToby Isaac . dm - the original DMPlex object 21846462276dSToby Isaac 21856462276dSToby Isaac Output Parameters: 2186a13df41bSStefano Zampini + sf - the PetscSF used for point distribution (optional) 2187a13df41bSStefano Zampini - gatherMesh - the gathered DM object, or NULL 21886462276dSToby Isaac 21896462276dSToby Isaac Level: intermediate 21906462276dSToby Isaac 2191db781477SPatrick Sanan .seealso: `DMPlexDistribute()`, `DMPlexGetRedundantDM()` 21926462276dSToby Isaac @*/ 2193a13df41bSStefano Zampini PetscErrorCode DMPlexGetGatherDM(DM dm, PetscSF *sf, DM *gatherMesh) 21946462276dSToby Isaac { 21956462276dSToby Isaac MPI_Comm comm; 21966462276dSToby Isaac PetscMPIInt size; 21976462276dSToby Isaac PetscPartitioner oldPart, gatherPart; 21986462276dSToby Isaac 21996462276dSToby Isaac PetscFunctionBegin; 22006462276dSToby Isaac PetscValidHeaderSpecific(dm,DM_CLASSID,1); 2201064a246eSJacob Faibussowitsch PetscValidPointer(gatherMesh,3); 22020c86c063SLisandro Dalcin *gatherMesh = NULL; 2203a13df41bSStefano Zampini if (sf) *sf = NULL; 22046462276dSToby Isaac comm = PetscObjectComm((PetscObject)dm); 22059566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm,&size)); 22066462276dSToby Isaac if (size == 1) PetscFunctionReturn(0); 22079566063dSJacob Faibussowitsch PetscCall(DMPlexGetPartitioner(dm,&oldPart)); 22089566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)oldPart)); 22099566063dSJacob Faibussowitsch PetscCall(PetscPartitionerCreate(comm,&gatherPart)); 22109566063dSJacob Faibussowitsch PetscCall(PetscPartitionerSetType(gatherPart,PETSCPARTITIONERGATHER)); 22119566063dSJacob Faibussowitsch PetscCall(DMPlexSetPartitioner(dm,gatherPart)); 22129566063dSJacob Faibussowitsch PetscCall(DMPlexDistribute(dm,0,sf,gatherMesh)); 2213a13df41bSStefano Zampini 22149566063dSJacob Faibussowitsch PetscCall(DMPlexSetPartitioner(dm,oldPart)); 22159566063dSJacob Faibussowitsch PetscCall(PetscPartitionerDestroy(&gatherPart)); 22169566063dSJacob Faibussowitsch PetscCall(PetscPartitionerDestroy(&oldPart)); 22176462276dSToby Isaac PetscFunctionReturn(0); 22186462276dSToby Isaac } 22196462276dSToby Isaac 22206462276dSToby Isaac /*@C 22216462276dSToby Isaac DMPlexGetRedundantDM - Get a copy of the DMPlex that is completely copied on each process. 22226462276dSToby Isaac 2223d083f849SBarry Smith Collective on dm 222483655b49SVáclav Hapla 2225064ec1f3Sprj- Input Parameter: 22266462276dSToby Isaac . dm - the original DMPlex object 22276462276dSToby Isaac 22286462276dSToby Isaac Output Parameters: 2229a13df41bSStefano Zampini + sf - the PetscSF used for point distribution (optional) 2230a13df41bSStefano Zampini - redundantMesh - the redundant DM object, or NULL 22316462276dSToby Isaac 22326462276dSToby Isaac Level: intermediate 22336462276dSToby Isaac 2234db781477SPatrick Sanan .seealso: `DMPlexDistribute()`, `DMPlexGetGatherDM()` 22356462276dSToby Isaac @*/ 2236a13df41bSStefano Zampini PetscErrorCode DMPlexGetRedundantDM(DM dm, PetscSF *sf, DM *redundantMesh) 22376462276dSToby Isaac { 22386462276dSToby Isaac MPI_Comm comm; 22396462276dSToby Isaac PetscMPIInt size, rank; 22406462276dSToby Isaac PetscInt pStart, pEnd, p; 22416462276dSToby Isaac PetscInt numPoints = -1; 2242a13df41bSStefano Zampini PetscSF migrationSF, sfPoint, gatherSF; 22436462276dSToby Isaac DM gatherDM, dmCoord; 22446462276dSToby Isaac PetscSFNode *points; 22456462276dSToby Isaac 22466462276dSToby Isaac PetscFunctionBegin; 22476462276dSToby Isaac PetscValidHeaderSpecific(dm,DM_CLASSID,1); 2248064a246eSJacob Faibussowitsch PetscValidPointer(redundantMesh,3); 22490c86c063SLisandro Dalcin *redundantMesh = NULL; 22506462276dSToby Isaac comm = PetscObjectComm((PetscObject)dm); 22519566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm,&size)); 225268dbc166SMatthew G. Knepley if (size == 1) { 22539566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject) dm)); 225468dbc166SMatthew G. Knepley *redundantMesh = dm; 2255a13df41bSStefano Zampini if (sf) *sf = NULL; 225668dbc166SMatthew G. Knepley PetscFunctionReturn(0); 225768dbc166SMatthew G. Knepley } 22589566063dSJacob Faibussowitsch PetscCall(DMPlexGetGatherDM(dm,&gatherSF,&gatherDM)); 22596462276dSToby Isaac if (!gatherDM) PetscFunctionReturn(0); 22609566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm,&rank)); 22619566063dSJacob Faibussowitsch PetscCall(DMPlexGetChart(gatherDM,&pStart,&pEnd)); 22626462276dSToby Isaac numPoints = pEnd - pStart; 22639566063dSJacob Faibussowitsch PetscCallMPI(MPI_Bcast(&numPoints,1,MPIU_INT,0,comm)); 22649566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(numPoints,&points)); 22659566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(comm,&migrationSF)); 22666462276dSToby Isaac for (p = 0; p < numPoints; p++) { 22676462276dSToby Isaac points[p].index = p; 22686462276dSToby Isaac points[p].rank = 0; 22696462276dSToby Isaac } 22709566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(migrationSF,pEnd-pStart,numPoints,NULL,PETSC_OWN_POINTER,points,PETSC_OWN_POINTER)); 22719566063dSJacob Faibussowitsch PetscCall(DMPlexCreate(comm, redundantMesh)); 22729566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject) *redundantMesh, "Redundant Mesh")); 22739566063dSJacob Faibussowitsch PetscCall(DMPlexMigrate(gatherDM, migrationSF, *redundantMesh)); 22742e28cf0cSVaclav Hapla /* This is to express that all point are in overlap */ 22752e28cf0cSVaclav Hapla PetscCall(DMPlexSetOverlap_Plex(*redundantMesh, NULL, PETSC_MAX_INT)); 22769566063dSJacob Faibussowitsch PetscCall(DMPlexCreatePointSF(*redundantMesh, migrationSF, PETSC_FALSE, &sfPoint)); 22779566063dSJacob Faibussowitsch PetscCall(DMSetPointSF(*redundantMesh, sfPoint)); 22789566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDM(*redundantMesh, &dmCoord)); 22799566063dSJacob Faibussowitsch if (dmCoord) PetscCall(DMSetPointSF(dmCoord, sfPoint)); 22809566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&sfPoint)); 2281a13df41bSStefano Zampini if (sf) { 2282a13df41bSStefano Zampini PetscSF tsf; 2283a13df41bSStefano Zampini 22849566063dSJacob Faibussowitsch PetscCall(PetscSFCompose(gatherSF,migrationSF,&tsf)); 22859566063dSJacob Faibussowitsch PetscCall(DMPlexStratifyMigrationSF(dm, tsf, sf)); 22869566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&tsf)); 2287a13df41bSStefano Zampini } 22889566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&migrationSF)); 22899566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&gatherSF)); 22909566063dSJacob Faibussowitsch PetscCall(DMDestroy(&gatherDM)); 22919566063dSJacob Faibussowitsch PetscCall(DMCopyDisc(dm, *redundantMesh)); 22925de52c6dSVaclav Hapla PetscCall(DMPlexCopy_Internal(dm, PETSC_TRUE, PETSC_FALSE, *redundantMesh)); 22936462276dSToby Isaac PetscFunctionReturn(0); 22946462276dSToby Isaac } 22955fa78c88SVaclav Hapla 22965fa78c88SVaclav Hapla /*@ 22975fa78c88SVaclav Hapla DMPlexIsDistributed - Find out whether this DM is distributed, i.e. more than one rank owns some points. 22985fa78c88SVaclav Hapla 22995fa78c88SVaclav Hapla Collective 23005fa78c88SVaclav Hapla 23015fa78c88SVaclav Hapla Input Parameter: 23025fa78c88SVaclav Hapla . dm - The DM object 23035fa78c88SVaclav Hapla 23045fa78c88SVaclav Hapla Output Parameter: 23055fa78c88SVaclav Hapla . distributed - Flag whether the DM is distributed 23065fa78c88SVaclav Hapla 23075fa78c88SVaclav Hapla Level: intermediate 23085fa78c88SVaclav Hapla 23095fa78c88SVaclav Hapla Notes: 23105fa78c88SVaclav Hapla This currently finds out whether at least two ranks have any DAG points. 23115fa78c88SVaclav Hapla This involves MPI_Allreduce() with one integer. 23125fa78c88SVaclav Hapla The result is currently not stashed so every call to this routine involves this global communication. 23135fa78c88SVaclav Hapla 2314db781477SPatrick Sanan .seealso: `DMPlexDistribute()`, `DMPlexGetOverlap()`, `DMPlexIsInterpolated()` 23155fa78c88SVaclav Hapla @*/ 23165fa78c88SVaclav Hapla PetscErrorCode DMPlexIsDistributed(DM dm, PetscBool *distributed) 23175fa78c88SVaclav Hapla { 23185fa78c88SVaclav Hapla PetscInt pStart, pEnd, count; 23195fa78c88SVaclav Hapla MPI_Comm comm; 232035d70e31SStefano Zampini PetscMPIInt size; 23215fa78c88SVaclav Hapla 23225fa78c88SVaclav Hapla PetscFunctionBegin; 23235fa78c88SVaclav Hapla PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 2324dadcf809SJacob Faibussowitsch PetscValidBoolPointer(distributed,2); 23259566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)dm,&comm)); 23269566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm,&size)); 232735d70e31SStefano Zampini if (size == 1) { *distributed = PETSC_FALSE; PetscFunctionReturn(0); } 23289566063dSJacob Faibussowitsch PetscCall(DMPlexGetChart(dm, &pStart, &pEnd)); 232935d70e31SStefano Zampini count = (pEnd - pStart) > 0 ? 1 : 0; 23309566063dSJacob Faibussowitsch PetscCallMPI(MPI_Allreduce(MPI_IN_PLACE, &count, 1, MPIU_INT, MPI_SUM, comm)); 23315fa78c88SVaclav Hapla *distributed = count > 1 ? PETSC_TRUE : PETSC_FALSE; 23325fa78c88SVaclav Hapla PetscFunctionReturn(0); 23335fa78c88SVaclav Hapla } 2334