xref: /petsc/src/dm/impls/plex/plexdistribute.c (revision 4fb89dddf56594b92bdd2ca7e24874fafe134f45)
1af0996ceSBarry Smith #include <petsc/private/dmpleximpl.h>    /*I      "petscdmplex.h"   I*/
2c58f1c22SToby Isaac #include <petsc/private/dmlabelimpl.h>   /*I      "petscdmlabel.h"  I*/
370034214SMatthew G. Knepley 
43c1f0c11SLawrence Mitchell /*@C
53c1f0c11SLawrence Mitchell   DMPlexSetAdjacencyUser - Define adjacency in the mesh using a user-provided callback
63c1f0c11SLawrence Mitchell 
73c1f0c11SLawrence Mitchell   Input Parameters:
83c1f0c11SLawrence Mitchell + dm      - The DM object
93c1f0c11SLawrence Mitchell . user    - The user callback, may be NULL (to clear the callback)
103c1f0c11SLawrence Mitchell - ctx     - context for callback evaluation, may be NULL
113c1f0c11SLawrence Mitchell 
123c1f0c11SLawrence Mitchell   Level: advanced
133c1f0c11SLawrence Mitchell 
143c1f0c11SLawrence Mitchell   Notes:
153c1f0c11SLawrence Mitchell      The caller of DMPlexGetAdjacency may need to arrange that a large enough array is available for the adjacency.
163c1f0c11SLawrence Mitchell 
173c1f0c11SLawrence Mitchell      Any setting here overrides other configuration of DMPlex adjacency determination.
183c1f0c11SLawrence Mitchell 
19db781477SPatrick Sanan .seealso: `DMSetAdjacency()`, `DMPlexDistribute()`, `DMPlexPreallocateOperator()`, `DMPlexGetAdjacency()`, `DMPlexGetAdjacencyUser()`
203c1f0c11SLawrence Mitchell @*/
213c1f0c11SLawrence Mitchell PetscErrorCode DMPlexSetAdjacencyUser(DM dm,PetscErrorCode (*user)(DM,PetscInt,PetscInt*,PetscInt[],void*),void *ctx)
223c1f0c11SLawrence Mitchell {
233c1f0c11SLawrence Mitchell   DM_Plex *mesh = (DM_Plex *)dm->data;
243c1f0c11SLawrence Mitchell 
253c1f0c11SLawrence Mitchell   PetscFunctionBegin;
263c1f0c11SLawrence Mitchell   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
273c1f0c11SLawrence Mitchell   mesh->useradjacency = user;
283c1f0c11SLawrence Mitchell   mesh->useradjacencyctx = ctx;
293c1f0c11SLawrence Mitchell   PetscFunctionReturn(0);
303c1f0c11SLawrence Mitchell }
313c1f0c11SLawrence Mitchell 
323c1f0c11SLawrence Mitchell /*@C
333c1f0c11SLawrence Mitchell   DMPlexGetAdjacencyUser - get the user-defined adjacency callback
343c1f0c11SLawrence Mitchell 
353c1f0c11SLawrence Mitchell   Input Parameter:
363c1f0c11SLawrence Mitchell . dm      - The DM object
373c1f0c11SLawrence Mitchell 
383c1f0c11SLawrence Mitchell   Output Parameters:
396b867d5aSJose E. Roman + user    - The user callback
403c1f0c11SLawrence Mitchell - ctx     - context for callback evaluation
413c1f0c11SLawrence Mitchell 
423c1f0c11SLawrence Mitchell   Level: advanced
433c1f0c11SLawrence Mitchell 
44db781477SPatrick Sanan .seealso: `DMSetAdjacency()`, `DMPlexDistribute()`, `DMPlexPreallocateOperator()`, `DMPlexGetAdjacency()`, `DMPlexSetAdjacencyUser()`
453c1f0c11SLawrence Mitchell @*/
463c1f0c11SLawrence Mitchell PetscErrorCode DMPlexGetAdjacencyUser(DM dm, PetscErrorCode (**user)(DM,PetscInt,PetscInt*,PetscInt[],void*), void **ctx)
473c1f0c11SLawrence Mitchell {
483c1f0c11SLawrence Mitchell   DM_Plex *mesh = (DM_Plex *)dm->data;
493c1f0c11SLawrence Mitchell 
503c1f0c11SLawrence Mitchell   PetscFunctionBegin;
513c1f0c11SLawrence Mitchell   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
523c1f0c11SLawrence Mitchell   if (user) *user = mesh->useradjacency;
533c1f0c11SLawrence Mitchell   if (ctx) *ctx = mesh->useradjacencyctx;
543c1f0c11SLawrence Mitchell   PetscFunctionReturn(0);
553c1f0c11SLawrence Mitchell }
563c1f0c11SLawrence Mitchell 
5770034214SMatthew G. Knepley /*@
58a17985deSToby Isaac   DMPlexSetAdjacencyUseAnchors - Define adjacency in the mesh using the point-to-point constraints.
598b0b4c70SToby Isaac 
608b0b4c70SToby Isaac   Input Parameters:
618b0b4c70SToby Isaac + dm      - The DM object
625b317d89SToby Isaac - useAnchors - Flag to use the constraints.  If PETSC_TRUE, then constrained points are omitted from DMPlexGetAdjacency(), and their anchor points appear in their place.
638b0b4c70SToby Isaac 
648b0b4c70SToby Isaac   Level: intermediate
658b0b4c70SToby Isaac 
66db781477SPatrick Sanan .seealso: `DMGetAdjacency()`, `DMSetAdjacency()`, `DMPlexDistribute()`, `DMPlexPreallocateOperator()`, `DMPlexSetAnchors()`
678b0b4c70SToby Isaac @*/
685b317d89SToby Isaac PetscErrorCode DMPlexSetAdjacencyUseAnchors(DM dm, PetscBool useAnchors)
698b0b4c70SToby Isaac {
708b0b4c70SToby Isaac   DM_Plex *mesh = (DM_Plex *) dm->data;
718b0b4c70SToby Isaac 
728b0b4c70SToby Isaac   PetscFunctionBegin;
738b0b4c70SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
745b317d89SToby Isaac   mesh->useAnchors = useAnchors;
758b0b4c70SToby Isaac   PetscFunctionReturn(0);
768b0b4c70SToby Isaac }
778b0b4c70SToby Isaac 
788b0b4c70SToby Isaac /*@
79a17985deSToby Isaac   DMPlexGetAdjacencyUseAnchors - Query whether adjacency in the mesh uses the point-to-point constraints.
808b0b4c70SToby Isaac 
818b0b4c70SToby Isaac   Input Parameter:
828b0b4c70SToby Isaac . dm      - The DM object
838b0b4c70SToby Isaac 
848b0b4c70SToby Isaac   Output Parameter:
855b317d89SToby Isaac . useAnchors - Flag to use the closure.  If PETSC_TRUE, then constrained points are omitted from DMPlexGetAdjacency(), and their anchor points appear in their place.
868b0b4c70SToby Isaac 
878b0b4c70SToby Isaac   Level: intermediate
888b0b4c70SToby Isaac 
89db781477SPatrick Sanan .seealso: `DMPlexSetAdjacencyUseAnchors()`, `DMSetAdjacency()`, `DMGetAdjacency()`, `DMPlexDistribute()`, `DMPlexPreallocateOperator()`, `DMPlexSetAnchors()`
908b0b4c70SToby Isaac @*/
915b317d89SToby Isaac PetscErrorCode DMPlexGetAdjacencyUseAnchors(DM dm, PetscBool *useAnchors)
928b0b4c70SToby Isaac {
938b0b4c70SToby Isaac   DM_Plex *mesh = (DM_Plex *) dm->data;
948b0b4c70SToby Isaac 
958b0b4c70SToby Isaac   PetscFunctionBegin;
968b0b4c70SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
97064a246eSJacob Faibussowitsch   PetscValidBoolPointer(useAnchors, 2);
985b317d89SToby Isaac   *useAnchors = mesh->useAnchors;
998b0b4c70SToby Isaac   PetscFunctionReturn(0);
1008b0b4c70SToby Isaac }
1018b0b4c70SToby Isaac 
10270034214SMatthew G. Knepley static PetscErrorCode DMPlexGetAdjacency_Cone_Internal(DM dm, PetscInt p, PetscInt *adjSize, PetscInt adj[])
10370034214SMatthew G. Knepley {
10470034214SMatthew G. Knepley   const PetscInt *cone = NULL;
10570034214SMatthew G. Knepley   PetscInt        numAdj = 0, maxAdjSize = *adjSize, coneSize, c;
10670034214SMatthew G. Knepley 
10770034214SMatthew G. Knepley   PetscFunctionBeginHot;
1089566063dSJacob Faibussowitsch   PetscCall(DMPlexGetConeSize(dm, p, &coneSize));
1099566063dSJacob Faibussowitsch   PetscCall(DMPlexGetCone(dm, p, &cone));
1104b6b44bdSMatthew G. Knepley   for (c = 0; c <= coneSize; ++c) {
1114b6b44bdSMatthew G. Knepley     const PetscInt  point   = !c ? p : cone[c-1];
11270034214SMatthew G. Knepley     const PetscInt *support = NULL;
11370034214SMatthew G. Knepley     PetscInt        supportSize, s, q;
11470034214SMatthew G. Knepley 
1159566063dSJacob Faibussowitsch     PetscCall(DMPlexGetSupportSize(dm, point, &supportSize));
1169566063dSJacob Faibussowitsch     PetscCall(DMPlexGetSupport(dm, point, &support));
11770034214SMatthew G. Knepley     for (s = 0; s < supportSize; ++s) {
118527e7439SSatish Balay       for (q = 0; q < numAdj || ((void)(adj[numAdj++] = support[s]),0); ++q) {
11970034214SMatthew G. Knepley         if (support[s] == adj[q]) break;
12070034214SMatthew G. Knepley       }
12163a3b9bcSJacob Faibussowitsch       PetscCheck(numAdj <= maxAdjSize,PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid mesh exceeded adjacency allocation (%" PetscInt_FMT ")", maxAdjSize);
12270034214SMatthew G. Knepley     }
12370034214SMatthew G. Knepley   }
12470034214SMatthew G. Knepley   *adjSize = numAdj;
12570034214SMatthew G. Knepley   PetscFunctionReturn(0);
12670034214SMatthew G. Knepley }
12770034214SMatthew G. Knepley 
12870034214SMatthew G. Knepley static PetscErrorCode DMPlexGetAdjacency_Support_Internal(DM dm, PetscInt p, PetscInt *adjSize, PetscInt adj[])
12970034214SMatthew G. Knepley {
13070034214SMatthew G. Knepley   const PetscInt *support = NULL;
13170034214SMatthew G. Knepley   PetscInt        numAdj   = 0, maxAdjSize = *adjSize, supportSize, s;
13270034214SMatthew G. Knepley 
13370034214SMatthew G. Knepley   PetscFunctionBeginHot;
1349566063dSJacob Faibussowitsch   PetscCall(DMPlexGetSupportSize(dm, p, &supportSize));
1359566063dSJacob Faibussowitsch   PetscCall(DMPlexGetSupport(dm, p, &support));
1364b6b44bdSMatthew G. Knepley   for (s = 0; s <= supportSize; ++s) {
1374b6b44bdSMatthew G. Knepley     const PetscInt  point = !s ? p : support[s-1];
13870034214SMatthew G. Knepley     const PetscInt *cone  = NULL;
13970034214SMatthew G. Knepley     PetscInt        coneSize, c, q;
14070034214SMatthew G. Knepley 
1419566063dSJacob Faibussowitsch     PetscCall(DMPlexGetConeSize(dm, point, &coneSize));
1429566063dSJacob Faibussowitsch     PetscCall(DMPlexGetCone(dm, point, &cone));
14370034214SMatthew G. Knepley     for (c = 0; c < coneSize; ++c) {
144527e7439SSatish Balay       for (q = 0; q < numAdj || ((void)(adj[numAdj++] = cone[c]),0); ++q) {
14570034214SMatthew G. Knepley         if (cone[c] == adj[q]) break;
14670034214SMatthew G. Knepley       }
14763a3b9bcSJacob Faibussowitsch       PetscCheck(numAdj <= maxAdjSize,PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid mesh exceeded adjacency allocation (%" PetscInt_FMT ")", maxAdjSize);
14870034214SMatthew G. Knepley     }
14970034214SMatthew G. Knepley   }
15070034214SMatthew G. Knepley   *adjSize = numAdj;
15170034214SMatthew G. Knepley   PetscFunctionReturn(0);
15270034214SMatthew G. Knepley }
15370034214SMatthew G. Knepley 
15470034214SMatthew G. Knepley static PetscErrorCode DMPlexGetAdjacency_Transitive_Internal(DM dm, PetscInt p, PetscBool useClosure, PetscInt *adjSize, PetscInt adj[])
15570034214SMatthew G. Knepley {
15670034214SMatthew G. Knepley   PetscInt      *star = NULL;
15770034214SMatthew G. Knepley   PetscInt       numAdj = 0, maxAdjSize = *adjSize, starSize, s;
15870034214SMatthew G. Knepley 
15970034214SMatthew G. Knepley   PetscFunctionBeginHot;
1609566063dSJacob Faibussowitsch   PetscCall(DMPlexGetTransitiveClosure(dm, p, useClosure, &starSize, &star));
16170034214SMatthew G. Knepley   for (s = 0; s < starSize*2; s += 2) {
16270034214SMatthew G. Knepley     const PetscInt *closure = NULL;
16370034214SMatthew G. Knepley     PetscInt        closureSize, c, q;
16470034214SMatthew G. Knepley 
1659566063dSJacob Faibussowitsch     PetscCall(DMPlexGetTransitiveClosure(dm, star[s], (PetscBool)!useClosure, &closureSize, (PetscInt**) &closure));
16670034214SMatthew G. Knepley     for (c = 0; c < closureSize*2; c += 2) {
167527e7439SSatish Balay       for (q = 0; q < numAdj || ((void)(adj[numAdj++] = closure[c]),0); ++q) {
16870034214SMatthew G. Knepley         if (closure[c] == adj[q]) break;
16970034214SMatthew G. Knepley       }
17063a3b9bcSJacob Faibussowitsch       PetscCheck(numAdj <= maxAdjSize,PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid mesh exceeded adjacency allocation (%" PetscInt_FMT ")", maxAdjSize);
17170034214SMatthew G. Knepley     }
1729566063dSJacob Faibussowitsch     PetscCall(DMPlexRestoreTransitiveClosure(dm, star[s], (PetscBool)!useClosure, &closureSize, (PetscInt**) &closure));
17370034214SMatthew G. Knepley   }
1749566063dSJacob Faibussowitsch   PetscCall(DMPlexRestoreTransitiveClosure(dm, p, useClosure, &starSize, &star));
17570034214SMatthew G. Knepley   *adjSize = numAdj;
17670034214SMatthew G. Knepley   PetscFunctionReturn(0);
17770034214SMatthew G. Knepley }
17870034214SMatthew G. Knepley 
1795b317d89SToby Isaac PetscErrorCode DMPlexGetAdjacency_Internal(DM dm, PetscInt p, PetscBool useCone, PetscBool useTransitiveClosure, PetscBool useAnchors, PetscInt *adjSize, PetscInt *adj[])
18070034214SMatthew G. Knepley {
18179bad331SMatthew G. Knepley   static PetscInt asiz = 0;
1828b0b4c70SToby Isaac   PetscInt maxAnchors = 1;
1838b0b4c70SToby Isaac   PetscInt aStart = -1, aEnd = -1;
1848b0b4c70SToby Isaac   PetscInt maxAdjSize;
1858b0b4c70SToby Isaac   PetscSection aSec = NULL;
1868b0b4c70SToby Isaac   IS aIS = NULL;
1878b0b4c70SToby Isaac   const PetscInt *anchors;
1883c1f0c11SLawrence Mitchell   DM_Plex *mesh = (DM_Plex *)dm->data;
18970034214SMatthew G. Knepley 
19070034214SMatthew G. Knepley   PetscFunctionBeginHot;
1915b317d89SToby Isaac   if (useAnchors) {
1929566063dSJacob Faibussowitsch     PetscCall(DMPlexGetAnchors(dm,&aSec,&aIS));
1938b0b4c70SToby Isaac     if (aSec) {
1949566063dSJacob Faibussowitsch       PetscCall(PetscSectionGetMaxDof(aSec,&maxAnchors));
19524c766afSToby Isaac       maxAnchors = PetscMax(1,maxAnchors);
1969566063dSJacob Faibussowitsch       PetscCall(PetscSectionGetChart(aSec,&aStart,&aEnd));
1979566063dSJacob Faibussowitsch       PetscCall(ISGetIndices(aIS,&anchors));
1988b0b4c70SToby Isaac     }
1998b0b4c70SToby Isaac   }
20079bad331SMatthew G. Knepley   if (!*adj) {
20124c766afSToby Isaac     PetscInt depth, coneSeries, supportSeries, maxC, maxS, pStart, pEnd;
20279bad331SMatthew G. Knepley 
2039566063dSJacob Faibussowitsch     PetscCall(DMPlexGetChart(dm, &pStart,&pEnd));
2049566063dSJacob Faibussowitsch     PetscCall(DMPlexGetDepth(dm, &depth));
205412e9a14SMatthew G. Knepley     depth = PetscMax(depth, -depth);
2069566063dSJacob Faibussowitsch     PetscCall(DMPlexGetMaxSizes(dm, &maxC, &maxS));
20724c766afSToby Isaac     coneSeries    = (maxC > 1) ? ((PetscPowInt(maxC,depth+1)-1)/(maxC-1)) : depth+1;
20824c766afSToby Isaac     supportSeries = (maxS > 1) ? ((PetscPowInt(maxS,depth+1)-1)/(maxS-1)) : depth+1;
20924c766afSToby Isaac     asiz  = PetscMax(PetscPowInt(maxS,depth)*coneSeries,PetscPowInt(maxC,depth)*supportSeries);
2108b0b4c70SToby Isaac     asiz *= maxAnchors;
21124c766afSToby Isaac     asiz  = PetscMin(asiz,pEnd-pStart);
2129566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(asiz,adj));
21379bad331SMatthew G. Knepley   }
21479bad331SMatthew G. Knepley   if (*adjSize < 0) *adjSize = asiz;
2158b0b4c70SToby Isaac   maxAdjSize = *adjSize;
2163c1f0c11SLawrence Mitchell   if (mesh->useradjacency) {
2179566063dSJacob Faibussowitsch     PetscCall((*mesh->useradjacency)(dm, p, adjSize, *adj, mesh->useradjacencyctx));
2183c1f0c11SLawrence Mitchell   } else if (useTransitiveClosure) {
2199566063dSJacob Faibussowitsch     PetscCall(DMPlexGetAdjacency_Transitive_Internal(dm, p, useCone, adjSize, *adj));
22070034214SMatthew G. Knepley   } else if (useCone) {
2219566063dSJacob Faibussowitsch     PetscCall(DMPlexGetAdjacency_Cone_Internal(dm, p, adjSize, *adj));
22270034214SMatthew G. Knepley   } else {
2239566063dSJacob Faibussowitsch     PetscCall(DMPlexGetAdjacency_Support_Internal(dm, p, adjSize, *adj));
22470034214SMatthew G. Knepley   }
2255b317d89SToby Isaac   if (useAnchors && aSec) {
2268b0b4c70SToby Isaac     PetscInt origSize = *adjSize;
2278b0b4c70SToby Isaac     PetscInt numAdj = origSize;
2288b0b4c70SToby Isaac     PetscInt i = 0, j;
2298b0b4c70SToby Isaac     PetscInt *orig = *adj;
2308b0b4c70SToby Isaac 
2318b0b4c70SToby Isaac     while (i < origSize) {
2328b0b4c70SToby Isaac       PetscInt p = orig[i];
2338b0b4c70SToby Isaac       PetscInt aDof = 0;
2348b0b4c70SToby Isaac 
2358b0b4c70SToby Isaac       if (p >= aStart && p < aEnd) {
2369566063dSJacob Faibussowitsch         PetscCall(PetscSectionGetDof(aSec,p,&aDof));
2378b0b4c70SToby Isaac       }
2388b0b4c70SToby Isaac       if (aDof) {
2398b0b4c70SToby Isaac         PetscInt aOff;
2408b0b4c70SToby Isaac         PetscInt s, q;
2418b0b4c70SToby Isaac 
2428b0b4c70SToby Isaac         for (j = i + 1; j < numAdj; j++) {
2438b0b4c70SToby Isaac           orig[j - 1] = orig[j];
2448b0b4c70SToby Isaac         }
2458b0b4c70SToby Isaac         origSize--;
2468b0b4c70SToby Isaac         numAdj--;
2479566063dSJacob Faibussowitsch         PetscCall(PetscSectionGetOffset(aSec,p,&aOff));
2488b0b4c70SToby Isaac         for (s = 0; s < aDof; ++s) {
249527e7439SSatish Balay           for (q = 0; q < numAdj || ((void)(orig[numAdj++] = anchors[aOff+s]),0); ++q) {
2508b0b4c70SToby Isaac             if (anchors[aOff+s] == orig[q]) break;
2518b0b4c70SToby Isaac           }
25263a3b9bcSJacob Faibussowitsch           PetscCheck(numAdj <= maxAdjSize,PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid mesh exceeded adjacency allocation (%" PetscInt_FMT ")", maxAdjSize);
2538b0b4c70SToby Isaac         }
2548b0b4c70SToby Isaac       }
2558b0b4c70SToby Isaac       else {
2568b0b4c70SToby Isaac         i++;
2578b0b4c70SToby Isaac       }
2588b0b4c70SToby Isaac     }
2598b0b4c70SToby Isaac     *adjSize = numAdj;
2609566063dSJacob Faibussowitsch     PetscCall(ISRestoreIndices(aIS,&anchors));
2618b0b4c70SToby Isaac   }
26270034214SMatthew G. Knepley   PetscFunctionReturn(0);
26370034214SMatthew G. Knepley }
26470034214SMatthew G. Knepley 
26570034214SMatthew G. Knepley /*@
26670034214SMatthew G. Knepley   DMPlexGetAdjacency - Return all points adjacent to the given point
26770034214SMatthew G. Knepley 
26870034214SMatthew G. Knepley   Input Parameters:
26970034214SMatthew G. Knepley + dm - The DM object
2706b867d5aSJose E. Roman - p  - The point
27170034214SMatthew G. Knepley 
2726b867d5aSJose E. Roman   Input/Output Parameters:
2736b867d5aSJose E. Roman + adjSize - The maximum size of adj if it is non-NULL, or PETSC_DETERMINE;
2746b867d5aSJose E. Roman             on output the number of adjacent points
2756b867d5aSJose E. Roman - adj - Either NULL so that the array is allocated, or an existing array with size adjSize;
2766b867d5aSJose E. Roman         on output contains the adjacent points
27770034214SMatthew G. Knepley 
27870034214SMatthew G. Knepley   Level: advanced
27970034214SMatthew G. Knepley 
28095452b02SPatrick Sanan   Notes:
28195452b02SPatrick Sanan     The user must PetscFree the adj array if it was not passed in.
28270034214SMatthew G. Knepley 
283db781477SPatrick Sanan .seealso: `DMSetAdjacency()`, `DMPlexDistribute()`, `DMCreateMatrix()`, `DMPlexPreallocateOperator()`
28470034214SMatthew G. Knepley @*/
28570034214SMatthew G. Knepley PetscErrorCode DMPlexGetAdjacency(DM dm, PetscInt p, PetscInt *adjSize, PetscInt *adj[])
28670034214SMatthew G. Knepley {
2871cf84007SMatthew G. Knepley   PetscBool      useCone, useClosure, useAnchors;
28870034214SMatthew G. Knepley 
28970034214SMatthew G. Knepley   PetscFunctionBeginHot;
29070034214SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
291dadcf809SJacob Faibussowitsch   PetscValidIntPointer(adjSize,3);
29270034214SMatthew G. Knepley   PetscValidPointer(adj,4);
2939566063dSJacob Faibussowitsch   PetscCall(DMGetBasicAdjacency(dm, &useCone, &useClosure));
2949566063dSJacob Faibussowitsch   PetscCall(DMPlexGetAdjacencyUseAnchors(dm, &useAnchors));
2959566063dSJacob Faibussowitsch   PetscCall(DMPlexGetAdjacency_Internal(dm, p, useCone, useClosure, useAnchors, adjSize, adj));
29670034214SMatthew G. Knepley   PetscFunctionReturn(0);
29770034214SMatthew G. Knepley }
29808633170SToby Isaac 
299b0a623aaSMatthew G. Knepley /*@
300b0a623aaSMatthew G. Knepley   DMPlexCreateTwoSidedProcessSF - Create an SF which just has process connectivity
301b0a623aaSMatthew G. Knepley 
302d083f849SBarry Smith   Collective on dm
303b0a623aaSMatthew G. Knepley 
304b0a623aaSMatthew G. Knepley   Input Parameters:
305b0a623aaSMatthew G. Knepley + dm      - The DM
3066b867d5aSJose E. Roman . sfPoint - The PetscSF which encodes point connectivity
3076b867d5aSJose E. Roman . rootRankSection -
3086b867d5aSJose E. Roman . rootRanks -
3096b867d5aSJose E. Roman . leftRankSection -
3106b867d5aSJose E. Roman - leafRanks -
311b0a623aaSMatthew G. Knepley 
312b0a623aaSMatthew G. Knepley   Output Parameters:
313b0a623aaSMatthew G. Knepley + processRanks - A list of process neighbors, or NULL
314b0a623aaSMatthew G. Knepley - sfProcess    - An SF encoding the two-sided process connectivity, or NULL
315b0a623aaSMatthew G. Knepley 
316b0a623aaSMatthew G. Knepley   Level: developer
317b0a623aaSMatthew G. Knepley 
318db781477SPatrick Sanan .seealso: `PetscSFCreate()`, `DMPlexCreateProcessSF()`
319b0a623aaSMatthew G. Knepley @*/
320b0a623aaSMatthew G. Knepley PetscErrorCode DMPlexCreateTwoSidedProcessSF(DM dm, PetscSF sfPoint, PetscSection rootRankSection, IS rootRanks, PetscSection leafRankSection, IS leafRanks, IS *processRanks, PetscSF *sfProcess)
321b0a623aaSMatthew G. Knepley {
322b0a623aaSMatthew G. Knepley   const PetscSFNode *remotePoints;
323b0a623aaSMatthew G. Knepley   PetscInt          *localPointsNew;
324b0a623aaSMatthew G. Knepley   PetscSFNode       *remotePointsNew;
325b0a623aaSMatthew G. Knepley   const PetscInt    *nranks;
326b0a623aaSMatthew G. Knepley   PetscInt          *ranksNew;
327b0a623aaSMatthew G. Knepley   PetscBT            neighbors;
328b0a623aaSMatthew G. Knepley   PetscInt           pStart, pEnd, p, numLeaves, l, numNeighbors, n;
3299852e123SBarry Smith   PetscMPIInt        size, proc, rank;
330b0a623aaSMatthew G. Knepley 
331b0a623aaSMatthew G. Knepley   PetscFunctionBegin;
332b0a623aaSMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
333b0a623aaSMatthew G. Knepley   PetscValidHeaderSpecific(sfPoint, PETSCSF_CLASSID, 2);
334064a246eSJacob Faibussowitsch   if (processRanks) {PetscValidPointer(processRanks, 7);}
335064a246eSJacob Faibussowitsch   if (sfProcess)    {PetscValidPointer(sfProcess, 8);}
3369566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject) dm), &size));
3379566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject) dm), &rank));
3389566063dSJacob Faibussowitsch   PetscCall(PetscSFGetGraph(sfPoint, NULL, &numLeaves, NULL, &remotePoints));
3399566063dSJacob Faibussowitsch   PetscCall(PetscBTCreate(size, &neighbors));
3409566063dSJacob Faibussowitsch   PetscCall(PetscBTMemzero(size, neighbors));
341b0a623aaSMatthew G. Knepley   /* Compute root-to-leaf process connectivity */
3429566063dSJacob Faibussowitsch   PetscCall(PetscSectionGetChart(rootRankSection, &pStart, &pEnd));
3439566063dSJacob Faibussowitsch   PetscCall(ISGetIndices(rootRanks, &nranks));
344b0a623aaSMatthew G. Knepley   for (p = pStart; p < pEnd; ++p) {
345b0a623aaSMatthew G. Knepley     PetscInt ndof, noff, n;
346b0a623aaSMatthew G. Knepley 
3479566063dSJacob Faibussowitsch     PetscCall(PetscSectionGetDof(rootRankSection, p, &ndof));
3489566063dSJacob Faibussowitsch     PetscCall(PetscSectionGetOffset(rootRankSection, p, &noff));
3499566063dSJacob Faibussowitsch     for (n = 0; n < ndof; ++n) PetscCall(PetscBTSet(neighbors, nranks[noff+n]));
350b0a623aaSMatthew G. Knepley   }
3519566063dSJacob Faibussowitsch   PetscCall(ISRestoreIndices(rootRanks, &nranks));
352b0a623aaSMatthew G. Knepley   /* Compute leaf-to-neighbor process connectivity */
3539566063dSJacob Faibussowitsch   PetscCall(PetscSectionGetChart(leafRankSection, &pStart, &pEnd));
3549566063dSJacob Faibussowitsch   PetscCall(ISGetIndices(leafRanks, &nranks));
355b0a623aaSMatthew G. Knepley   for (p = pStart; p < pEnd; ++p) {
356b0a623aaSMatthew G. Knepley     PetscInt ndof, noff, n;
357b0a623aaSMatthew G. Knepley 
3589566063dSJacob Faibussowitsch     PetscCall(PetscSectionGetDof(leafRankSection, p, &ndof));
3599566063dSJacob Faibussowitsch     PetscCall(PetscSectionGetOffset(leafRankSection, p, &noff));
3609566063dSJacob Faibussowitsch     for (n = 0; n < ndof; ++n) PetscCall(PetscBTSet(neighbors, nranks[noff+n]));
361b0a623aaSMatthew G. Knepley   }
3629566063dSJacob Faibussowitsch   PetscCall(ISRestoreIndices(leafRanks, &nranks));
363b0a623aaSMatthew G. Knepley   /* Compute leaf-to-root process connectivity */
364b0a623aaSMatthew G. Knepley   for (l = 0; l < numLeaves; ++l) {PetscBTSet(neighbors, remotePoints[l].rank);}
365b0a623aaSMatthew G. Knepley   /* Calculate edges */
366b0a623aaSMatthew G. Knepley   PetscBTClear(neighbors, rank);
3679852e123SBarry Smith   for (proc = 0, numNeighbors = 0; proc < size; ++proc) {if (PetscBTLookup(neighbors, proc)) ++numNeighbors;}
3689566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(numNeighbors, &ranksNew));
3699566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(numNeighbors, &localPointsNew));
3709566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(numNeighbors, &remotePointsNew));
3719852e123SBarry Smith   for (proc = 0, n = 0; proc < size; ++proc) {
372b0a623aaSMatthew G. Knepley     if (PetscBTLookup(neighbors, proc)) {
373b0a623aaSMatthew G. Knepley       ranksNew[n]              = proc;
374b0a623aaSMatthew G. Knepley       localPointsNew[n]        = proc;
375b0a623aaSMatthew G. Knepley       remotePointsNew[n].index = rank;
376b0a623aaSMatthew G. Knepley       remotePointsNew[n].rank  = proc;
377b0a623aaSMatthew G. Knepley       ++n;
378b0a623aaSMatthew G. Knepley     }
379b0a623aaSMatthew G. Knepley   }
3809566063dSJacob Faibussowitsch   PetscCall(PetscBTDestroy(&neighbors));
3819566063dSJacob Faibussowitsch   if (processRanks) PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)dm), numNeighbors, ranksNew, PETSC_OWN_POINTER, processRanks));
3829566063dSJacob Faibussowitsch   else              PetscCall(PetscFree(ranksNew));
383b0a623aaSMatthew G. Knepley   if (sfProcess) {
3849566063dSJacob Faibussowitsch     PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)dm), sfProcess));
3859566063dSJacob Faibussowitsch     PetscCall(PetscObjectSetName((PetscObject) *sfProcess, "Two-Sided Process SF"));
3869566063dSJacob Faibussowitsch     PetscCall(PetscSFSetFromOptions(*sfProcess));
3879566063dSJacob Faibussowitsch     PetscCall(PetscSFSetGraph(*sfProcess, size, numNeighbors, localPointsNew, PETSC_OWN_POINTER, remotePointsNew, PETSC_OWN_POINTER));
388b0a623aaSMatthew G. Knepley   }
389b0a623aaSMatthew G. Knepley   PetscFunctionReturn(0);
390b0a623aaSMatthew G. Knepley }
391b0a623aaSMatthew G. Knepley 
392b0a623aaSMatthew G. Knepley /*@
393b0a623aaSMatthew G. Knepley   DMPlexDistributeOwnership - Compute owner information for shared points. This basically gets two-sided for an SF.
394b0a623aaSMatthew G. Knepley 
395d083f849SBarry Smith   Collective on dm
396b0a623aaSMatthew G. Knepley 
397b0a623aaSMatthew G. Knepley   Input Parameter:
398b0a623aaSMatthew G. Knepley . dm - The DM
399b0a623aaSMatthew G. Knepley 
400b0a623aaSMatthew G. Knepley   Output Parameters:
401b0a623aaSMatthew G. Knepley + rootSection - The number of leaves for a given root point
402b0a623aaSMatthew G. Knepley . rootrank    - The rank of each edge into the root point
403b0a623aaSMatthew G. Knepley . leafSection - The number of processes sharing a given leaf point
404b0a623aaSMatthew G. Knepley - leafrank    - The rank of each process sharing a leaf point
405b0a623aaSMatthew G. Knepley 
406b0a623aaSMatthew G. Knepley   Level: developer
407b0a623aaSMatthew G. Knepley 
408db781477SPatrick Sanan .seealso: `DMPlexCreateOverlapLabel()`, `DMPlexDistribute()`, `DMPlexDistributeOverlap()`
409b0a623aaSMatthew G. Knepley @*/
410b0a623aaSMatthew G. Knepley PetscErrorCode DMPlexDistributeOwnership(DM dm, PetscSection rootSection, IS *rootrank, PetscSection leafSection, IS *leafrank)
411b0a623aaSMatthew G. Knepley {
412b0a623aaSMatthew G. Knepley   MPI_Comm        comm;
413b0a623aaSMatthew G. Knepley   PetscSF         sfPoint;
414b0a623aaSMatthew G. Knepley   const PetscInt *rootdegree;
415b0a623aaSMatthew G. Knepley   PetscInt       *myrank, *remoterank;
416b0a623aaSMatthew G. Knepley   PetscInt        pStart, pEnd, p, nedges;
417b0a623aaSMatthew G. Knepley   PetscMPIInt     rank;
418b0a623aaSMatthew G. Knepley 
419b0a623aaSMatthew G. Knepley   PetscFunctionBegin;
4209566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject) dm, &comm));
4219566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(comm, &rank));
4229566063dSJacob Faibussowitsch   PetscCall(DMPlexGetChart(dm, &pStart, &pEnd));
4239566063dSJacob Faibussowitsch   PetscCall(DMGetPointSF(dm, &sfPoint));
424b0a623aaSMatthew G. Knepley   /* Compute number of leaves for each root */
4259566063dSJacob Faibussowitsch   PetscCall(PetscObjectSetName((PetscObject) rootSection, "Root Section"));
4269566063dSJacob Faibussowitsch   PetscCall(PetscSectionSetChart(rootSection, pStart, pEnd));
4279566063dSJacob Faibussowitsch   PetscCall(PetscSFComputeDegreeBegin(sfPoint, &rootdegree));
4289566063dSJacob Faibussowitsch   PetscCall(PetscSFComputeDegreeEnd(sfPoint, &rootdegree));
4299566063dSJacob Faibussowitsch   for (p = pStart; p < pEnd; ++p) PetscCall(PetscSectionSetDof(rootSection, p, rootdegree[p-pStart]));
4309566063dSJacob Faibussowitsch   PetscCall(PetscSectionSetUp(rootSection));
431b0a623aaSMatthew G. Knepley   /* Gather rank of each leaf to root */
4329566063dSJacob Faibussowitsch   PetscCall(PetscSectionGetStorageSize(rootSection, &nedges));
4339566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(pEnd-pStart, &myrank));
4349566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(nedges,  &remoterank));
435b0a623aaSMatthew G. Knepley   for (p = 0; p < pEnd-pStart; ++p) myrank[p] = rank;
4369566063dSJacob Faibussowitsch   PetscCall(PetscSFGatherBegin(sfPoint, MPIU_INT, myrank, remoterank));
4379566063dSJacob Faibussowitsch   PetscCall(PetscSFGatherEnd(sfPoint, MPIU_INT, myrank, remoterank));
4389566063dSJacob Faibussowitsch   PetscCall(PetscFree(myrank));
4399566063dSJacob Faibussowitsch   PetscCall(ISCreateGeneral(comm, nedges, remoterank, PETSC_OWN_POINTER, rootrank));
440b0a623aaSMatthew G. Knepley   /* Distribute remote ranks to leaves */
4419566063dSJacob Faibussowitsch   PetscCall(PetscObjectSetName((PetscObject) leafSection, "Leaf Section"));
4429566063dSJacob Faibussowitsch   PetscCall(DMPlexDistributeFieldIS(dm, sfPoint, rootSection, *rootrank, leafSection, leafrank));
443b0a623aaSMatthew G. Knepley   PetscFunctionReturn(0);
444b0a623aaSMatthew G. Knepley }
445b0a623aaSMatthew G. Knepley 
446c506a872SMatthew G. Knepley #if 0
447c506a872SMatthew G. Knepley static PetscErrorCode DMPlexCopyOverlapLabels(DM dm, DM ndm)
448c506a872SMatthew G. Knepley {
449c506a872SMatthew G. Knepley   DM_Plex *mesh  = (DM_Plex *) dm->data;
450c506a872SMatthew G. Knepley   DM_Plex *nmesh = (DM_Plex *) ndm->data;
451c506a872SMatthew G. Knepley 
452c506a872SMatthew G. Knepley   PetscFunctionBegin;
453c506a872SMatthew G. Knepley   if (mesh->numOvLabels) {
454c506a872SMatthew G. Knepley     const char *name;
455c506a872SMatthew G. Knepley     PetscInt    l;
456c506a872SMatthew G. Knepley 
457c506a872SMatthew G. Knepley     nmesh->numOvLabels = mesh->numOvLabels;
458c506a872SMatthew G. Knepley     for (l = 0; l < mesh->numOvLabels; ++l) {
459c506a872SMatthew G. Knepley       PetscCall(PetscObjectGetName((PetscObject) mesh->ovLabels[l], &name));
460c506a872SMatthew G. Knepley       PetscCall(DMGetLabel(ndm, name, &nmesh->ovLabels[l]));
461c506a872SMatthew G. Knepley       nmesh->ovValues[l] = mesh->ovValues[l];
462c506a872SMatthew G. Knepley     }
463c506a872SMatthew G. Knepley     PetscCall(PetscObjectGetName((PetscObject) mesh->ovExLabel, &name));
464c506a872SMatthew G. Knepley     PetscCall(DMGetLabel(ndm, name, &nmesh->ovExLabel));
465c506a872SMatthew G. Knepley     nmesh->ovExValue = mesh->ovExValue;
466c506a872SMatthew G. Knepley   }
467c506a872SMatthew G. Knepley   PetscFunctionReturn(0);
468c506a872SMatthew G. Knepley }
469c506a872SMatthew G. Knepley #endif
470c506a872SMatthew G. Knepley 
471278397a0SMatthew G. Knepley /*@C
472c506a872SMatthew G. Knepley   DMPlexCreateOverlapLabel - Compute a label indicating what overlap points should be sent to new processes
473b0a623aaSMatthew G. Knepley 
474d083f849SBarry Smith   Collective on dm
475b0a623aaSMatthew G. Knepley 
476b0a623aaSMatthew G. Knepley   Input Parameters:
477b0a623aaSMatthew G. Knepley + dm          - The DM
47824d039d7SMichael Lange . levels      - Number of overlap levels
479b0a623aaSMatthew G. Knepley . rootSection - The number of leaves for a given root point
480b0a623aaSMatthew G. Knepley . rootrank    - The rank of each edge into the root point
481b0a623aaSMatthew G. Knepley . leafSection - The number of processes sharing a given leaf point
482b0a623aaSMatthew G. Knepley - leafrank    - The rank of each process sharing a leaf point
483b0a623aaSMatthew G. Knepley 
484064ec1f3Sprj-   Output Parameter:
485b4ec6ac8SBarry Smith . ovLabel     - DMLabel containing remote overlap contributions as point/rank pairings
486b0a623aaSMatthew G. Knepley 
487b0a623aaSMatthew G. Knepley   Level: developer
488b0a623aaSMatthew G. Knepley 
489c506a872SMatthew G. Knepley .seealso: `DMPlexCreateOverlapLabelFromLabels()`, `DMPlexGetAdjacency()`, `DMPlexDistributeOwnership()`, `DMPlexDistribute()`
490b0a623aaSMatthew G. Knepley @*/
491dccdeccaSVaclav Hapla PetscErrorCode DMPlexCreateOverlapLabel(DM dm, PetscInt levels, PetscSection rootSection, IS rootrank, PetscSection leafSection, IS leafrank, DMLabel *ovLabel)
492b0a623aaSMatthew G. Knepley {
493e540f424SMichael Lange   MPI_Comm           comm;
494b0a623aaSMatthew G. Knepley   DMLabel            ovAdjByRank; /* A DMLabel containing all points adjacent to shared points, separated by rank (value in label) */
495874ddda9SLisandro Dalcin   PetscSF            sfPoint;
496b0a623aaSMatthew G. Knepley   const PetscSFNode *remote;
497b0a623aaSMatthew G. Knepley   const PetscInt    *local;
4981fd9873aSMichael Lange   const PetscInt    *nrank, *rrank;
499b0a623aaSMatthew G. Knepley   PetscInt          *adj = NULL;
5001fd9873aSMichael Lange   PetscInt           pStart, pEnd, p, sStart, sEnd, nleaves, l;
5019852e123SBarry Smith   PetscMPIInt        rank, size;
50231bc6364SLisandro Dalcin   PetscBool          flg;
503b0a623aaSMatthew G. Knepley 
504b0a623aaSMatthew G. Knepley   PetscFunctionBegin;
5056ba1a4c7SVaclav Hapla   *ovLabel = NULL;
5069566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject) dm, &comm));
5079566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
5089566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(comm, &rank));
5096ba1a4c7SVaclav Hapla   if (size == 1) PetscFunctionReturn(0);
5109566063dSJacob Faibussowitsch   PetscCall(DMGetPointSF(dm, &sfPoint));
5119566063dSJacob Faibussowitsch   PetscCall(DMPlexGetChart(dm, &pStart, &pEnd));
512d1674c6dSMatthew Knepley   if (!levels) {
513d1674c6dSMatthew Knepley     /* Add owned points */
5149566063dSJacob Faibussowitsch     PetscCall(DMLabelCreate(PETSC_COMM_SELF, "Overlap label", ovLabel));
5159566063dSJacob Faibussowitsch     for (p = pStart; p < pEnd; ++p) PetscCall(DMLabelSetValue(*ovLabel, p, rank));
516d1674c6dSMatthew Knepley     PetscFunctionReturn(0);
517d1674c6dSMatthew Knepley   }
5189566063dSJacob Faibussowitsch   PetscCall(PetscSectionGetChart(leafSection, &sStart, &sEnd));
5199566063dSJacob Faibussowitsch   PetscCall(PetscSFGetGraph(sfPoint, NULL, &nleaves, &local, &remote));
5209566063dSJacob Faibussowitsch   PetscCall(DMLabelCreate(PETSC_COMM_SELF, "Overlap adjacency", &ovAdjByRank));
521b0a623aaSMatthew G. Knepley   /* Handle leaves: shared with the root point */
522b0a623aaSMatthew G. Knepley   for (l = 0; l < nleaves; ++l) {
523b0a623aaSMatthew G. Knepley     PetscInt adjSize = PETSC_DETERMINE, a;
524b0a623aaSMatthew G. Knepley 
5259566063dSJacob Faibussowitsch     PetscCall(DMPlexGetAdjacency(dm, local ? local[l] : l, &adjSize, &adj));
5269566063dSJacob Faibussowitsch     for (a = 0; a < adjSize; ++a) PetscCall(DMLabelSetValue(ovAdjByRank, adj[a], remote[l].rank));
527b0a623aaSMatthew G. Knepley   }
5289566063dSJacob Faibussowitsch   PetscCall(ISGetIndices(rootrank, &rrank));
5299566063dSJacob Faibussowitsch   PetscCall(ISGetIndices(leafrank, &nrank));
530b0a623aaSMatthew G. Knepley   /* Handle roots */
531b0a623aaSMatthew G. Knepley   for (p = pStart; p < pEnd; ++p) {
532b0a623aaSMatthew G. Knepley     PetscInt adjSize = PETSC_DETERMINE, neighbors = 0, noff, n, a;
533b0a623aaSMatthew G. Knepley 
534b0a623aaSMatthew G. Knepley     if ((p >= sStart) && (p < sEnd)) {
535b0a623aaSMatthew G. Knepley       /* Some leaves share a root with other leaves on different processes */
5369566063dSJacob Faibussowitsch       PetscCall(PetscSectionGetDof(leafSection, p, &neighbors));
537b0a623aaSMatthew G. Knepley       if (neighbors) {
5389566063dSJacob Faibussowitsch         PetscCall(PetscSectionGetOffset(leafSection, p, &noff));
5399566063dSJacob Faibussowitsch         PetscCall(DMPlexGetAdjacency(dm, p, &adjSize, &adj));
540b0a623aaSMatthew G. Knepley         for (n = 0; n < neighbors; ++n) {
541b0a623aaSMatthew G. Knepley           const PetscInt remoteRank = nrank[noff+n];
542b0a623aaSMatthew G. Knepley 
543b0a623aaSMatthew G. Knepley           if (remoteRank == rank) continue;
5449566063dSJacob Faibussowitsch           for (a = 0; a < adjSize; ++a) PetscCall(DMLabelSetValue(ovAdjByRank, adj[a], remoteRank));
545b0a623aaSMatthew G. Knepley         }
546b0a623aaSMatthew G. Knepley       }
547b0a623aaSMatthew G. Knepley     }
548b0a623aaSMatthew G. Knepley     /* Roots are shared with leaves */
5499566063dSJacob Faibussowitsch     PetscCall(PetscSectionGetDof(rootSection, p, &neighbors));
550b0a623aaSMatthew G. Knepley     if (!neighbors) continue;
5519566063dSJacob Faibussowitsch     PetscCall(PetscSectionGetOffset(rootSection, p, &noff));
5529566063dSJacob Faibussowitsch     PetscCall(DMPlexGetAdjacency(dm, p, &adjSize, &adj));
553b0a623aaSMatthew G. Knepley     for (n = 0; n < neighbors; ++n) {
554b0a623aaSMatthew G. Knepley       const PetscInt remoteRank = rrank[noff+n];
555b0a623aaSMatthew G. Knepley 
556b0a623aaSMatthew G. Knepley       if (remoteRank == rank) continue;
5579566063dSJacob Faibussowitsch       for (a = 0; a < adjSize; ++a) PetscCall(DMLabelSetValue(ovAdjByRank, adj[a], remoteRank));
558b0a623aaSMatthew G. Knepley     }
559b0a623aaSMatthew G. Knepley   }
5609566063dSJacob Faibussowitsch   PetscCall(PetscFree(adj));
5619566063dSJacob Faibussowitsch   PetscCall(ISRestoreIndices(rootrank, &rrank));
5629566063dSJacob Faibussowitsch   PetscCall(ISRestoreIndices(leafrank, &nrank));
56324d039d7SMichael Lange   /* Add additional overlap levels */
564be200f8dSMichael Lange   for (l = 1; l < levels; l++) {
565be200f8dSMichael Lange     /* Propagate point donations over SF to capture remote connections */
5669566063dSJacob Faibussowitsch     PetscCall(DMPlexPartitionLabelPropagate(dm, ovAdjByRank));
567be200f8dSMichael Lange     /* Add next level of point donations to the label */
5689566063dSJacob Faibussowitsch     PetscCall(DMPlexPartitionLabelAdjacency(dm, ovAdjByRank));
569be200f8dSMichael Lange   }
57026a7d390SMatthew G. Knepley   /* We require the closure in the overlap */
5719566063dSJacob Faibussowitsch   PetscCall(DMPlexPartitionLabelClosure(dm, ovAdjByRank));
5729566063dSJacob Faibussowitsch   PetscCall(PetscOptionsHasName(((PetscObject) dm)->options,((PetscObject) dm)->prefix, "-overlap_view", &flg));
573e540f424SMichael Lange   if (flg) {
574825f8a23SLisandro Dalcin     PetscViewer viewer;
5759566063dSJacob Faibussowitsch     PetscCall(PetscViewerASCIIGetStdout(PetscObjectComm((PetscObject)dm), &viewer));
5769566063dSJacob Faibussowitsch     PetscCall(DMLabelView(ovAdjByRank, viewer));
577b0a623aaSMatthew G. Knepley   }
578874ddda9SLisandro Dalcin   /* Invert sender to receiver label */
5799566063dSJacob Faibussowitsch   PetscCall(DMLabelCreate(PETSC_COMM_SELF, "Overlap label", ovLabel));
5809566063dSJacob Faibussowitsch   PetscCall(DMPlexPartitionLabelInvert(dm, ovAdjByRank, NULL, *ovLabel));
581a9f1d5b2SMichael Lange   /* Add owned points, except for shared local points */
5829566063dSJacob Faibussowitsch   for (p = pStart; p < pEnd; ++p) PetscCall(DMLabelSetValue(*ovLabel, p, rank));
583e540f424SMichael Lange   for (l = 0; l < nleaves; ++l) {
5849566063dSJacob Faibussowitsch     PetscCall(DMLabelClearValue(*ovLabel, local[l], rank));
5859566063dSJacob Faibussowitsch     PetscCall(DMLabelSetValue(*ovLabel, remote[l].index, remote[l].rank));
586e540f424SMichael Lange   }
587e540f424SMichael Lange   /* Clean up */
5889566063dSJacob Faibussowitsch   PetscCall(DMLabelDestroy(&ovAdjByRank));
589b0a623aaSMatthew G. Knepley   PetscFunctionReturn(0);
590b0a623aaSMatthew G. Knepley }
59170034214SMatthew G. Knepley 
592c506a872SMatthew G. Knepley static PetscErrorCode HandlePoint_Private(DM dm, PetscInt p, PetscSection section, const PetscInt ranks[], PetscInt numExLabels, const DMLabel exLabel[], const PetscInt exValue[], DMLabel ovAdjByRank)
593c506a872SMatthew G. Knepley {
594c506a872SMatthew G. Knepley   PetscInt neighbors, el;
595c506a872SMatthew G. Knepley 
596c506a872SMatthew G. Knepley   PetscFunctionBegin;
597c506a872SMatthew G. Knepley   PetscCall(PetscSectionGetDof(section, p, &neighbors));
598c506a872SMatthew G. Knepley   if (neighbors) {
599c506a872SMatthew G. Knepley     PetscInt   *adj = NULL;
600c506a872SMatthew G. Knepley     PetscInt    adjSize = PETSC_DETERMINE, noff, n, a;
601c506a872SMatthew G. Knepley     PetscMPIInt rank;
602c506a872SMatthew G. Knepley 
603c506a872SMatthew G. Knepley     PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject) dm), &rank));
604c506a872SMatthew G. Knepley     PetscCall(PetscSectionGetOffset(section, p, &noff));
605c506a872SMatthew G. Knepley     PetscCall(DMPlexGetAdjacency(dm, p, &adjSize, &adj));
606c506a872SMatthew G. Knepley     for (n = 0; n < neighbors; ++n) {
607c506a872SMatthew G. Knepley       const PetscInt remoteRank = ranks[noff+n];
608c506a872SMatthew G. Knepley 
609c506a872SMatthew G. Knepley       if (remoteRank == rank) continue;
610c506a872SMatthew G. Knepley       for (a = 0; a < adjSize; ++a) {
611c506a872SMatthew G. Knepley         PetscBool insert = PETSC_TRUE;
612c506a872SMatthew G. Knepley 
613c506a872SMatthew G. Knepley         for (el = 0; el < numExLabels; ++el) {
614c506a872SMatthew G. Knepley           PetscInt exVal;
615c506a872SMatthew G. Knepley           PetscCall(DMLabelGetValue(exLabel[el], adj[a], &exVal));
616c506a872SMatthew G. Knepley           if (exVal == exValue[el]) {insert = PETSC_FALSE; break;}
617c506a872SMatthew G. Knepley         }
618c506a872SMatthew G. Knepley         if (insert) PetscCall(DMLabelSetValue(ovAdjByRank, adj[a], remoteRank));
619c506a872SMatthew G. Knepley       }
620c506a872SMatthew G. Knepley     }
621c506a872SMatthew G. Knepley   }
622c506a872SMatthew G. Knepley   PetscFunctionReturn(0);
623c506a872SMatthew G. Knepley }
624c506a872SMatthew G. Knepley 
625c506a872SMatthew G. Knepley /*@C
626c506a872SMatthew G. Knepley   DMPlexCreateOverlapLabelFromLabels - Compute a label indicating what overlap points should be sent to new processes
627c506a872SMatthew G. Knepley 
628c506a872SMatthew G. Knepley   Collective on dm
629c506a872SMatthew G. Knepley 
630c506a872SMatthew G. Knepley   Input Parameters:
631c506a872SMatthew G. Knepley + dm          - The DM
632c506a872SMatthew G. Knepley . numLabels   - The number of labels to draw candidate points from
633c506a872SMatthew G. Knepley . label       - An array of labels containing candidate points
634c506a872SMatthew G. Knepley . value       - An array of label values marking the candidate points
635c506a872SMatthew G. Knepley . numExLabels - The number of labels to use for exclusion
636c506a872SMatthew G. Knepley . exLabel     - An array of labels indicating points to be excluded, or NULL
637c506a872SMatthew G. Knepley . exValue     - An array of label values to be excluded, or NULL
638c506a872SMatthew G. Knepley . rootSection - The number of leaves for a given root point
639c506a872SMatthew G. Knepley . rootrank    - The rank of each edge into the root point
640c506a872SMatthew G. Knepley . leafSection - The number of processes sharing a given leaf point
641c506a872SMatthew G. Knepley - leafrank    - The rank of each process sharing a leaf point
642c506a872SMatthew G. Knepley 
643c506a872SMatthew G. Knepley   Output Parameter:
644c506a872SMatthew G. Knepley . ovLabel     - DMLabel containing remote overlap contributions as point/rank pairings
645c506a872SMatthew G. Knepley 
646c506a872SMatthew G. Knepley   Note:
647c506a872SMatthew G. Knepley   The candidate points are only added to the overlap if they are adjacent to a shared point
648c506a872SMatthew G. Knepley 
649c506a872SMatthew G. Knepley   Level: developer
650c506a872SMatthew G. Knepley 
651c506a872SMatthew G. Knepley .seealso: `DMPlexCreateOverlapLabel()`, `DMPlexGetAdjacency()`, `DMPlexDistributeOwnership()`, `DMPlexDistribute()`
652c506a872SMatthew G. Knepley @*/
653c506a872SMatthew G. Knepley PetscErrorCode DMPlexCreateOverlapLabelFromLabels(DM dm, PetscInt numLabels, const DMLabel label[], const PetscInt value[],
654c506a872SMatthew G. Knepley   PetscInt numExLabels, const DMLabel exLabel[], const PetscInt exValue[], PetscSection rootSection, IS rootrank, PetscSection leafSection, IS leafrank, DMLabel *ovLabel)
655c506a872SMatthew G. Knepley {
656c506a872SMatthew G. Knepley   MPI_Comm           comm;
657c506a872SMatthew G. Knepley   DMLabel            ovAdjByRank; /* A DMLabel containing all points adjacent to shared points, separated by rank (value in label) */
658c506a872SMatthew G. Knepley   PetscSF            sfPoint;
659c506a872SMatthew G. Knepley   const PetscSFNode *remote;
660c506a872SMatthew G. Knepley   const PetscInt    *local;
661c506a872SMatthew G. Knepley   const PetscInt    *nrank, *rrank;
662c506a872SMatthew G. Knepley   PetscInt          *adj = NULL;
663c506a872SMatthew G. Knepley   PetscInt           pStart, pEnd, p, sStart, sEnd, nleaves, l, el;
664c506a872SMatthew G. Knepley   PetscMPIInt        rank, size;
665c506a872SMatthew G. Knepley   PetscBool          flg;
666c506a872SMatthew G. Knepley 
667c506a872SMatthew G. Knepley   PetscFunctionBegin;
668c506a872SMatthew G. Knepley   *ovLabel = NULL;
669c506a872SMatthew G. Knepley   PetscCall(PetscObjectGetComm((PetscObject) dm, &comm));
670c506a872SMatthew G. Knepley   PetscCallMPI(MPI_Comm_size(comm, &size));
671c506a872SMatthew G. Knepley   PetscCallMPI(MPI_Comm_rank(comm, &rank));
672c506a872SMatthew G. Knepley   if (size == 1) PetscFunctionReturn(0);
673c506a872SMatthew G. Knepley   PetscCall(DMGetPointSF(dm, &sfPoint));
674c506a872SMatthew G. Knepley   PetscCall(DMPlexGetChart(dm, &pStart, &pEnd));
675c506a872SMatthew G. Knepley   PetscCall(PetscSectionGetChart(leafSection, &sStart, &sEnd));
676c506a872SMatthew G. Knepley   PetscCall(PetscSFGetGraph(sfPoint, NULL, &nleaves, &local, &remote));
677c506a872SMatthew G. Knepley   PetscCall(DMLabelCreate(PETSC_COMM_SELF, "Overlap adjacency", &ovAdjByRank));
678c506a872SMatthew G. Knepley   PetscCall(ISGetIndices(rootrank, &rrank));
679c506a872SMatthew G. Knepley   PetscCall(ISGetIndices(leafrank, &nrank));
680c506a872SMatthew G. Knepley   for (l = 0; l < numLabels; ++l) {
681c506a872SMatthew G. Knepley     IS              valIS;
682c506a872SMatthew G. Knepley     const PetscInt *points;
683c506a872SMatthew G. Knepley     PetscInt        n;
684c506a872SMatthew G. Knepley 
685c506a872SMatthew G. Knepley     PetscCall(DMLabelGetStratumIS(label[l], value[l], &valIS));
686c506a872SMatthew G. Knepley     if (!valIS) continue;
687c506a872SMatthew G. Knepley     PetscCall(ISGetIndices(valIS, &points));
688c506a872SMatthew G. Knepley     PetscCall(ISGetLocalSize(valIS, &n));
689c506a872SMatthew G. Knepley     for (PetscInt i = 0; i < n; ++i) {
690c506a872SMatthew G. Knepley       const PetscInt p = points[i];
691c506a872SMatthew G. Knepley 
692c506a872SMatthew G. Knepley       if ((p >= sStart) && (p < sEnd)) {
693c506a872SMatthew G. Knepley         PetscInt loc, adjSize = PETSC_DETERMINE;
694c506a872SMatthew G. Knepley 
695c506a872SMatthew G. Knepley         /* Handle leaves: shared with the root point */
696c506a872SMatthew G. Knepley         if (local) PetscCall(PetscFindInt(p, nleaves, local, &loc));
697c506a872SMatthew G. Knepley         else       loc = (p >= 0 && p < nleaves) ? p : -1;
698c506a872SMatthew G. Knepley         if (loc >= 0) {
699c506a872SMatthew G. Knepley           const PetscInt remoteRank = remote[loc].rank;
700c506a872SMatthew G. Knepley 
701c506a872SMatthew G. Knepley           PetscCall(DMPlexGetAdjacency(dm, p, &adjSize, &adj));
702c506a872SMatthew G. Knepley           for (PetscInt a = 0; a < adjSize; ++a) {
703c506a872SMatthew G. Knepley             PetscBool insert = PETSC_TRUE;
704c506a872SMatthew G. Knepley 
705c506a872SMatthew G. Knepley             for (el = 0; el < numExLabels; ++el) {
706c506a872SMatthew G. Knepley               PetscInt exVal;
707c506a872SMatthew G. Knepley               PetscCall(DMLabelGetValue(exLabel[el], adj[a], &exVal));
708c506a872SMatthew G. Knepley               if (exVal == exValue[el]) {insert = PETSC_FALSE; break;}
709c506a872SMatthew G. Knepley             }
710c506a872SMatthew G. Knepley             if (insert) PetscCall(DMLabelSetValue(ovAdjByRank, adj[a], remoteRank));
711c506a872SMatthew G. Knepley           }
712c506a872SMatthew G. Knepley         }
713c506a872SMatthew G. Knepley         /* Some leaves share a root with other leaves on different processes */
714c506a872SMatthew G. Knepley         HandlePoint_Private(dm, p, leafSection, nrank, numExLabels, exLabel, exValue, ovAdjByRank);
715c506a872SMatthew G. Knepley       }
716c506a872SMatthew G. Knepley       /* Roots are shared with leaves */
717c506a872SMatthew G. Knepley       HandlePoint_Private(dm, p, rootSection, rrank, numExLabels, exLabel, exValue, ovAdjByRank);
718c506a872SMatthew G. Knepley     }
719c506a872SMatthew G. Knepley     PetscCall(ISRestoreIndices(valIS, &points));
720c506a872SMatthew G. Knepley     PetscCall(ISDestroy(&valIS));
721c506a872SMatthew G. Knepley   }
722c506a872SMatthew G. Knepley   PetscCall(PetscFree(adj));
723c506a872SMatthew G. Knepley   PetscCall(ISRestoreIndices(rootrank, &rrank));
724c506a872SMatthew G. Knepley   PetscCall(ISRestoreIndices(leafrank, &nrank));
725c506a872SMatthew G. Knepley   /* We require the closure in the overlap */
726c506a872SMatthew G. Knepley   PetscCall(DMPlexPartitionLabelClosure(dm, ovAdjByRank));
727c506a872SMatthew G. Knepley   PetscCall(PetscOptionsHasName(((PetscObject) dm)->options,((PetscObject) dm)->prefix, "-overlap_view", &flg));
728c506a872SMatthew G. Knepley   if (flg) {
729c506a872SMatthew G. Knepley     PetscViewer viewer;
730c506a872SMatthew G. Knepley     PetscCall(PetscViewerASCIIGetStdout(PetscObjectComm((PetscObject)dm), &viewer));
731c506a872SMatthew G. Knepley     PetscCall(DMLabelView(ovAdjByRank, viewer));
732c506a872SMatthew G. Knepley   }
733c506a872SMatthew G. Knepley   /* Invert sender to receiver label */
734c506a872SMatthew G. Knepley   PetscCall(DMLabelCreate(PETSC_COMM_SELF, "Overlap label", ovLabel));
735c506a872SMatthew G. Knepley   PetscCall(DMPlexPartitionLabelInvert(dm, ovAdjByRank, NULL, *ovLabel));
736c506a872SMatthew G. Knepley   /* Add owned points, except for shared local points */
737c506a872SMatthew G. Knepley   for (p = pStart; p < pEnd; ++p) PetscCall(DMLabelSetValue(*ovLabel, p, rank));
738c506a872SMatthew G. Knepley   for (l = 0; l < nleaves; ++l) {
739c506a872SMatthew G. Knepley     PetscCall(DMLabelClearValue(*ovLabel, local[l], rank));
740c506a872SMatthew G. Knepley     PetscCall(DMLabelSetValue(*ovLabel, remote[l].index, remote[l].rank));
741c506a872SMatthew G. Knepley   }
742c506a872SMatthew G. Knepley   /* Clean up */
743c506a872SMatthew G. Knepley   PetscCall(DMLabelDestroy(&ovAdjByRank));
744c506a872SMatthew G. Knepley   PetscFunctionReturn(0);
745c506a872SMatthew G. Knepley }
746c506a872SMatthew G. Knepley 
74724cc2ca5SMatthew G. Knepley /*@C
74824cc2ca5SMatthew G. Knepley   DMPlexCreateOverlapMigrationSF - Create an SF describing the new mesh distribution to make the overlap described by the input SF
74924cc2ca5SMatthew G. Knepley 
750d083f849SBarry Smith   Collective on dm
75124cc2ca5SMatthew G. Knepley 
75224cc2ca5SMatthew G. Knepley   Input Parameters:
75324cc2ca5SMatthew G. Knepley + dm          - The DM
75424cc2ca5SMatthew G. Knepley - overlapSF   - The SF mapping ghost points in overlap to owner points on other processes
75524cc2ca5SMatthew G. Knepley 
756064ec1f3Sprj-   Output Parameter:
757a2b725a8SWilliam Gropp . migrationSF - An SF that maps original points in old locations to points in new locations
75824cc2ca5SMatthew G. Knepley 
75924cc2ca5SMatthew G. Knepley   Level: developer
76024cc2ca5SMatthew G. Knepley 
761db781477SPatrick Sanan .seealso: `DMPlexCreateOverlapLabel()`, `DMPlexDistributeOverlap()`, `DMPlexDistribute()`
76224cc2ca5SMatthew G. Knepley @*/
76346f9b1c3SMichael Lange PetscErrorCode DMPlexCreateOverlapMigrationSF(DM dm, PetscSF overlapSF, PetscSF *migrationSF)
76446f9b1c3SMichael Lange {
76546f9b1c3SMichael Lange   MPI_Comm           comm;
7669852e123SBarry Smith   PetscMPIInt        rank, size;
76746f9b1c3SMichael Lange   PetscInt           d, dim, p, pStart, pEnd, nroots, nleaves, newLeaves, point, numSharedPoints;
76846f9b1c3SMichael Lange   PetscInt          *pointDepths, *remoteDepths, *ilocal;
76946f9b1c3SMichael Lange   PetscInt          *depthRecv, *depthShift, *depthIdx;
77046f9b1c3SMichael Lange   PetscSFNode       *iremote;
77146f9b1c3SMichael Lange   PetscSF            pointSF;
77246f9b1c3SMichael Lange   const PetscInt    *sharedLocal;
77346f9b1c3SMichael Lange   const PetscSFNode *overlapRemote, *sharedRemote;
77446f9b1c3SMichael Lange 
77546f9b1c3SMichael Lange   PetscFunctionBegin;
77646f9b1c3SMichael Lange   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
7779566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)dm, &comm));
7789566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(comm, &rank));
7799566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
7809566063dSJacob Faibussowitsch   PetscCall(DMGetDimension(dm, &dim));
78146f9b1c3SMichael Lange 
78246f9b1c3SMichael Lange   /* Before building the migration SF we need to know the new stratum offsets */
7839566063dSJacob Faibussowitsch   PetscCall(PetscSFGetGraph(overlapSF, &nroots, &nleaves, NULL, &overlapRemote));
7849566063dSJacob Faibussowitsch   PetscCall(PetscMalloc2(nroots, &pointDepths, nleaves, &remoteDepths));
78546f9b1c3SMichael Lange   for (d=0; d<dim+1; d++) {
7869566063dSJacob Faibussowitsch     PetscCall(DMPlexGetDepthStratum(dm, d, &pStart, &pEnd));
78746f9b1c3SMichael Lange     for (p=pStart; p<pEnd; p++) pointDepths[p] = d;
78846f9b1c3SMichael Lange   }
78946f9b1c3SMichael Lange   for (p=0; p<nleaves; p++) remoteDepths[p] = -1;
7909566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastBegin(overlapSF, MPIU_INT, pointDepths, remoteDepths,MPI_REPLACE));
7919566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastEnd(overlapSF, MPIU_INT, pointDepths, remoteDepths,MPI_REPLACE));
79246f9b1c3SMichael Lange 
7932d4ee042Sprj-   /* Count received points in each stratum and compute the internal strata shift */
7949566063dSJacob Faibussowitsch   PetscCall(PetscMalloc3(dim+1, &depthRecv, dim+1, &depthShift, dim+1, &depthIdx));
79546f9b1c3SMichael Lange   for (d=0; d<dim+1; d++) depthRecv[d]=0;
79646f9b1c3SMichael Lange   for (p=0; p<nleaves; p++) depthRecv[remoteDepths[p]]++;
79746f9b1c3SMichael Lange   depthShift[dim] = 0;
79846f9b1c3SMichael Lange   for (d=0; d<dim; d++) depthShift[d] = depthRecv[dim];
79946f9b1c3SMichael Lange   for (d=1; d<dim; d++) depthShift[d] += depthRecv[0];
80046f9b1c3SMichael Lange   for (d=dim-2; d>0; d--) depthShift[d] += depthRecv[d+1];
80146f9b1c3SMichael Lange   for (d=0; d<dim+1; d++) {
8029566063dSJacob Faibussowitsch     PetscCall(DMPlexGetDepthStratum(dm, d, &pStart, &pEnd));
80346f9b1c3SMichael Lange     depthIdx[d] = pStart + depthShift[d];
80446f9b1c3SMichael Lange   }
80546f9b1c3SMichael Lange 
80646f9b1c3SMichael Lange   /* Form the overlap SF build an SF that describes the full overlap migration SF */
8079566063dSJacob Faibussowitsch   PetscCall(DMPlexGetChart(dm, &pStart, &pEnd));
80846f9b1c3SMichael Lange   newLeaves = pEnd - pStart + nleaves;
8099566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(newLeaves, &ilocal));
8109566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(newLeaves, &iremote));
81146f9b1c3SMichael Lange   /* First map local points to themselves */
81246f9b1c3SMichael Lange   for (d=0; d<dim+1; d++) {
8139566063dSJacob Faibussowitsch     PetscCall(DMPlexGetDepthStratum(dm, d, &pStart, &pEnd));
81446f9b1c3SMichael Lange     for (p=pStart; p<pEnd; p++) {
81546f9b1c3SMichael Lange       point = p + depthShift[d];
81646f9b1c3SMichael Lange       ilocal[point] = point;
81746f9b1c3SMichael Lange       iremote[point].index = p;
81846f9b1c3SMichael Lange       iremote[point].rank = rank;
81946f9b1c3SMichael Lange       depthIdx[d]++;
82046f9b1c3SMichael Lange     }
82146f9b1c3SMichael Lange   }
82246f9b1c3SMichael Lange 
82346f9b1c3SMichael Lange   /* Add in the remote roots for currently shared points */
8249566063dSJacob Faibussowitsch   PetscCall(DMGetPointSF(dm, &pointSF));
8259566063dSJacob Faibussowitsch   PetscCall(PetscSFGetGraph(pointSF, NULL, &numSharedPoints, &sharedLocal, &sharedRemote));
82646f9b1c3SMichael Lange   for (d=0; d<dim+1; d++) {
8279566063dSJacob Faibussowitsch     PetscCall(DMPlexGetDepthStratum(dm, d, &pStart, &pEnd));
82846f9b1c3SMichael Lange     for (p=0; p<numSharedPoints; p++) {
82946f9b1c3SMichael Lange       if (pStart <= sharedLocal[p] && sharedLocal[p] < pEnd) {
83046f9b1c3SMichael Lange         point = sharedLocal[p] + depthShift[d];
83146f9b1c3SMichael Lange         iremote[point].index = sharedRemote[p].index;
83246f9b1c3SMichael Lange         iremote[point].rank = sharedRemote[p].rank;
83346f9b1c3SMichael Lange       }
83446f9b1c3SMichael Lange     }
83546f9b1c3SMichael Lange   }
83646f9b1c3SMichael Lange 
83746f9b1c3SMichael Lange   /* Now add the incoming overlap points */
83846f9b1c3SMichael Lange   for (p=0; p<nleaves; p++) {
83946f9b1c3SMichael Lange     point = depthIdx[remoteDepths[p]];
84046f9b1c3SMichael Lange     ilocal[point] = point;
84146f9b1c3SMichael Lange     iremote[point].index = overlapRemote[p].index;
84246f9b1c3SMichael Lange     iremote[point].rank = overlapRemote[p].rank;
84346f9b1c3SMichael Lange     depthIdx[remoteDepths[p]]++;
84446f9b1c3SMichael Lange   }
8459566063dSJacob Faibussowitsch   PetscCall(PetscFree2(pointDepths,remoteDepths));
84646f9b1c3SMichael Lange 
8479566063dSJacob Faibussowitsch   PetscCall(PetscSFCreate(comm, migrationSF));
8489566063dSJacob Faibussowitsch   PetscCall(PetscObjectSetName((PetscObject) *migrationSF, "Overlap Migration SF"));
8499566063dSJacob Faibussowitsch   PetscCall(PetscSFSetFromOptions(*migrationSF));
8509566063dSJacob Faibussowitsch   PetscCall(DMPlexGetChart(dm, &pStart, &pEnd));
8519566063dSJacob Faibussowitsch   PetscCall(PetscSFSetGraph(*migrationSF, pEnd-pStart, newLeaves, ilocal, PETSC_OWN_POINTER, iremote, PETSC_OWN_POINTER));
85246f9b1c3SMichael Lange 
8539566063dSJacob Faibussowitsch   PetscCall(PetscFree3(depthRecv, depthShift, depthIdx));
85470034214SMatthew G. Knepley   PetscFunctionReturn(0);
85570034214SMatthew G. Knepley }
85670034214SMatthew G. Knepley 
857a9f1d5b2SMichael Lange /*@
858f0e73a3dSToby Isaac   DMPlexStratifyMigrationSF - Rearrange the leaves of a migration sf for stratification.
859a9f1d5b2SMichael Lange 
860064ec1f3Sprj-   Input Parameters:
861a9f1d5b2SMichael Lange + dm          - The DM
862a9f1d5b2SMichael Lange - sf          - A star forest with non-ordered leaves, usually defining a DM point migration
863a9f1d5b2SMichael Lange 
864a9f1d5b2SMichael Lange   Output Parameter:
865a9f1d5b2SMichael Lange . migrationSF - A star forest with added leaf indirection that ensures the resulting DM is stratified
866a9f1d5b2SMichael Lange 
867412e9a14SMatthew G. Knepley   Note:
868412e9a14SMatthew G. Knepley   This lexicographically sorts by (depth, cellType)
869412e9a14SMatthew G. Knepley 
870a9f1d5b2SMichael Lange   Level: developer
871a9f1d5b2SMichael Lange 
872db781477SPatrick Sanan .seealso: `DMPlexPartitionLabelCreateSF()`, `DMPlexDistribute()`, `DMPlexDistributeOverlap()`
873a9f1d5b2SMichael Lange @*/
874a9f1d5b2SMichael Lange PetscErrorCode DMPlexStratifyMigrationSF(DM dm, PetscSF sf, PetscSF *migrationSF)
875a9f1d5b2SMichael Lange {
876a9f1d5b2SMichael Lange   MPI_Comm           comm;
8779852e123SBarry Smith   PetscMPIInt        rank, size;
878412e9a14SMatthew G. Knepley   PetscInt           d, ldepth, depth, dim, p, pStart, pEnd, nroots, nleaves;
879412e9a14SMatthew G. Knepley   PetscSFNode       *pointDepths, *remoteDepths;
880412e9a14SMatthew G. Knepley   PetscInt          *ilocal;
881a9f1d5b2SMichael Lange   PetscInt          *depthRecv, *depthShift, *depthIdx;
882412e9a14SMatthew G. Knepley   PetscInt          *ctRecv,    *ctShift,    *ctIdx;
883a9f1d5b2SMichael Lange   const PetscSFNode *iremote;
884a9f1d5b2SMichael Lange 
885a9f1d5b2SMichael Lange   PetscFunctionBegin;
886a9f1d5b2SMichael Lange   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
8879566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject) dm, &comm));
8889566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(comm, &rank));
8899566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
8909566063dSJacob Faibussowitsch   PetscCall(DMPlexGetDepth(dm, &ldepth));
8919566063dSJacob Faibussowitsch   PetscCall(DMGetDimension(dm, &dim));
8921c2dc1cbSBarry Smith   PetscCall(MPIU_Allreduce(&ldepth, &depth, 1, MPIU_INT, MPI_MAX, comm));
89363a3b9bcSJacob Faibussowitsch   PetscCheck(!(ldepth >= 0) || !(depth != ldepth),PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Inconsistent Plex depth %" PetscInt_FMT " != %" PetscInt_FMT, ldepth, depth);
8949566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(DMPLEX_PartStratSF,dm,0,0,0));
895a9f1d5b2SMichael Lange 
896a9f1d5b2SMichael Lange   /* Before building the migration SF we need to know the new stratum offsets */
8979566063dSJacob Faibussowitsch   PetscCall(PetscSFGetGraph(sf, &nroots, &nleaves, NULL, &iremote));
8989566063dSJacob Faibussowitsch   PetscCall(PetscMalloc2(nroots, &pointDepths, nleaves, &remoteDepths));
8997fab53ddSMatthew G. Knepley   for (d = 0; d < depth+1; ++d) {
9009566063dSJacob Faibussowitsch     PetscCall(DMPlexGetDepthStratum(dm, d, &pStart, &pEnd));
901f0e73a3dSToby Isaac     for (p = pStart; p < pEnd; ++p) {
902412e9a14SMatthew G. Knepley       DMPolytopeType ct;
903f0e73a3dSToby Isaac 
9049566063dSJacob Faibussowitsch       PetscCall(DMPlexGetCellType(dm, p, &ct));
905412e9a14SMatthew G. Knepley       pointDepths[p].index = d;
906412e9a14SMatthew G. Knepley       pointDepths[p].rank  = ct;
907f0e73a3dSToby Isaac     }
908412e9a14SMatthew G. Knepley   }
909412e9a14SMatthew G. Knepley   for (p = 0; p < nleaves; ++p) {remoteDepths[p].index = -1; remoteDepths[p].rank = -1;}
9109566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastBegin(sf, MPIU_2INT, pointDepths, remoteDepths,MPI_REPLACE));
9119566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastEnd(sf, MPIU_2INT, pointDepths, remoteDepths,MPI_REPLACE));
912412e9a14SMatthew G. Knepley   /* Count received points in each stratum and compute the internal strata shift */
9139566063dSJacob Faibussowitsch   PetscCall(PetscCalloc6(depth+1, &depthRecv, depth+1, &depthShift, depth+1, &depthIdx, DM_NUM_POLYTOPES, &ctRecv, DM_NUM_POLYTOPES, &ctShift, DM_NUM_POLYTOPES, &ctIdx));
914412e9a14SMatthew G. Knepley   for (p = 0; p < nleaves; ++p) {
915412e9a14SMatthew G. Knepley     if (remoteDepths[p].rank < 0) {
916412e9a14SMatthew G. Knepley       ++depthRecv[remoteDepths[p].index];
917412e9a14SMatthew G. Knepley     } else {
918412e9a14SMatthew G. Knepley       ++ctRecv[remoteDepths[p].rank];
919412e9a14SMatthew G. Knepley     }
920412e9a14SMatthew G. Knepley   }
921412e9a14SMatthew G. Knepley   {
922412e9a14SMatthew G. Knepley     PetscInt depths[4], dims[4], shift = 0, i, c;
923412e9a14SMatthew G. Knepley 
9248238f61eSMatthew G. Knepley     /* Cells (depth), Vertices (0), Faces (depth-1), Edges (1)
9258238f61eSMatthew G. Knepley          Consider DM_POLYTOPE_FV_GHOST and DM_POLYTOPE_INTERIOR_GHOST as cells
9268238f61eSMatthew G. Knepley      */
927412e9a14SMatthew G. Knepley     depths[0] = depth; depths[1] = 0; depths[2] = depth-1; depths[3] = 1;
928412e9a14SMatthew G. Knepley     dims[0]   = dim;   dims[1]   = 0; dims[2]   = dim-1;   dims[3]   = 1;
929412e9a14SMatthew G. Knepley     for (i = 0; i <= depth; ++i) {
930412e9a14SMatthew G. Knepley       const PetscInt dep = depths[i];
931412e9a14SMatthew G. Knepley       const PetscInt dim = dims[i];
932412e9a14SMatthew G. Knepley 
933412e9a14SMatthew G. Knepley       for (c = 0; c < DM_NUM_POLYTOPES; ++c) {
9348238f61eSMatthew G. Knepley         if (DMPolytopeTypeGetDim((DMPolytopeType) c) != dim && !(i == 0 && (c == DM_POLYTOPE_FV_GHOST || c == DM_POLYTOPE_INTERIOR_GHOST))) continue;
935412e9a14SMatthew G. Knepley         ctShift[c] = shift;
936412e9a14SMatthew G. Knepley         shift     += ctRecv[c];
937412e9a14SMatthew G. Knepley       }
938412e9a14SMatthew G. Knepley       depthShift[dep] = shift;
939412e9a14SMatthew G. Knepley       shift          += depthRecv[dep];
940412e9a14SMatthew G. Knepley     }
941412e9a14SMatthew G. Knepley     for (c = 0; c < DM_NUM_POLYTOPES; ++c) {
942412e9a14SMatthew G. Knepley       const PetscInt ctDim = DMPolytopeTypeGetDim((DMPolytopeType) c);
943412e9a14SMatthew G. Knepley 
9448238f61eSMatthew G. Knepley       if ((ctDim < 0 || ctDim > dim) && (c != DM_POLYTOPE_FV_GHOST && c != DM_POLYTOPE_INTERIOR_GHOST)) {
945412e9a14SMatthew G. Knepley         ctShift[c] = shift;
946412e9a14SMatthew G. Knepley         shift     += ctRecv[c];
947412e9a14SMatthew G. Knepley       }
948412e9a14SMatthew G. Knepley     }
949412e9a14SMatthew G. Knepley   }
950a9f1d5b2SMichael Lange   /* Derive a new local permutation based on stratified indices */
9519566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(nleaves, &ilocal));
9527fab53ddSMatthew G. Knepley   for (p = 0; p < nleaves; ++p) {
953412e9a14SMatthew G. Knepley     const PetscInt       dep = remoteDepths[p].index;
954412e9a14SMatthew G. Knepley     const DMPolytopeType ct  = (DMPolytopeType) remoteDepths[p].rank;
9557fab53ddSMatthew G. Knepley 
956412e9a14SMatthew G. Knepley     if ((PetscInt) ct < 0) {
9577fab53ddSMatthew G. Knepley       ilocal[p] = depthShift[dep] + depthIdx[dep];
958412e9a14SMatthew G. Knepley       ++depthIdx[dep];
959412e9a14SMatthew G. Knepley     } else {
960412e9a14SMatthew G. Knepley       ilocal[p] = ctShift[ct] + ctIdx[ct];
961412e9a14SMatthew G. Knepley       ++ctIdx[ct];
962412e9a14SMatthew G. Knepley     }
963a9f1d5b2SMichael Lange   }
9649566063dSJacob Faibussowitsch   PetscCall(PetscSFCreate(comm, migrationSF));
9659566063dSJacob Faibussowitsch   PetscCall(PetscObjectSetName((PetscObject) *migrationSF, "Migration SF"));
9669566063dSJacob Faibussowitsch   PetscCall(PetscSFSetGraph(*migrationSF, nroots, nleaves, ilocal, PETSC_OWN_POINTER, (PetscSFNode*)iremote, PETSC_COPY_VALUES));
9679566063dSJacob Faibussowitsch   PetscCall(PetscFree2(pointDepths,remoteDepths));
9689566063dSJacob Faibussowitsch   PetscCall(PetscFree6(depthRecv, depthShift, depthIdx, ctRecv, ctShift, ctIdx));
9699566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(DMPLEX_PartStratSF,dm,0,0,0));
970a9f1d5b2SMichael Lange   PetscFunctionReturn(0);
971a9f1d5b2SMichael Lange }
972a9f1d5b2SMichael Lange 
97370034214SMatthew G. Knepley /*@
97470034214SMatthew G. Knepley   DMPlexDistributeField - Distribute field data to match a given PetscSF, usually the SF from mesh distribution
97570034214SMatthew G. Knepley 
976d083f849SBarry Smith   Collective on dm
97770034214SMatthew G. Knepley 
97870034214SMatthew G. Knepley   Input Parameters:
97970034214SMatthew G. Knepley + dm - The DMPlex object
98070034214SMatthew G. Knepley . pointSF - The PetscSF describing the communication pattern
98170034214SMatthew G. Knepley . originalSection - The PetscSection for existing data layout
982cb15cd0eSMatthew G. Knepley - originalVec - The existing data in a local vector
98370034214SMatthew G. Knepley 
98470034214SMatthew G. Knepley   Output Parameters:
98570034214SMatthew G. Knepley + newSection - The PetscSF describing the new data layout
986cb15cd0eSMatthew G. Knepley - newVec - The new data in a local vector
98770034214SMatthew G. Knepley 
98870034214SMatthew G. Knepley   Level: developer
98970034214SMatthew G. Knepley 
990db781477SPatrick Sanan .seealso: `DMPlexDistribute()`, `DMPlexDistributeFieldIS()`, `DMPlexDistributeData()`
99170034214SMatthew G. Knepley @*/
99270034214SMatthew G. Knepley PetscErrorCode DMPlexDistributeField(DM dm, PetscSF pointSF, PetscSection originalSection, Vec originalVec, PetscSection newSection, Vec newVec)
99370034214SMatthew G. Knepley {
99470034214SMatthew G. Knepley   PetscSF        fieldSF;
99570034214SMatthew G. Knepley   PetscInt      *remoteOffsets, fieldSize;
99670034214SMatthew G. Knepley   PetscScalar   *originalValues, *newValues;
99770034214SMatthew G. Knepley 
99870034214SMatthew G. Knepley   PetscFunctionBegin;
9999566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(DMPLEX_DistributeField,dm,0,0,0));
10009566063dSJacob Faibussowitsch   PetscCall(PetscSFDistributeSection(pointSF, originalSection, &remoteOffsets, newSection));
100170034214SMatthew G. Knepley 
10029566063dSJacob Faibussowitsch   PetscCall(PetscSectionGetStorageSize(newSection, &fieldSize));
10039566063dSJacob Faibussowitsch   PetscCall(VecSetSizes(newVec, fieldSize, PETSC_DETERMINE));
10049566063dSJacob Faibussowitsch   PetscCall(VecSetType(newVec,dm->vectype));
100570034214SMatthew G. Knepley 
10069566063dSJacob Faibussowitsch   PetscCall(VecGetArray(originalVec, &originalValues));
10079566063dSJacob Faibussowitsch   PetscCall(VecGetArray(newVec, &newValues));
10089566063dSJacob Faibussowitsch   PetscCall(PetscSFCreateSectionSF(pointSF, originalSection, remoteOffsets, newSection, &fieldSF));
10099566063dSJacob Faibussowitsch   PetscCall(PetscFree(remoteOffsets));
10109566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastBegin(fieldSF, MPIU_SCALAR, originalValues, newValues,MPI_REPLACE));
10119566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastEnd(fieldSF, MPIU_SCALAR, originalValues, newValues,MPI_REPLACE));
10129566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&fieldSF));
10139566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(newVec, &newValues));
10149566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(originalVec, &originalValues));
10159566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(DMPLEX_DistributeField,dm,0,0,0));
101670034214SMatthew G. Knepley   PetscFunctionReturn(0);
101770034214SMatthew G. Knepley }
101870034214SMatthew G. Knepley 
101970034214SMatthew G. Knepley /*@
102070034214SMatthew G. Knepley   DMPlexDistributeFieldIS - Distribute field data to match a given PetscSF, usually the SF from mesh distribution
102170034214SMatthew G. Knepley 
1022d083f849SBarry Smith   Collective on dm
102370034214SMatthew G. Knepley 
102470034214SMatthew G. Knepley   Input Parameters:
102570034214SMatthew G. Knepley + dm - The DMPlex object
102670034214SMatthew G. Knepley . pointSF - The PetscSF describing the communication pattern
102770034214SMatthew G. Knepley . originalSection - The PetscSection for existing data layout
102870034214SMatthew G. Knepley - originalIS - The existing data
102970034214SMatthew G. Knepley 
103070034214SMatthew G. Knepley   Output Parameters:
103170034214SMatthew G. Knepley + newSection - The PetscSF describing the new data layout
103270034214SMatthew G. Knepley - newIS - The new data
103370034214SMatthew G. Knepley 
103470034214SMatthew G. Knepley   Level: developer
103570034214SMatthew G. Knepley 
1036db781477SPatrick Sanan .seealso: `DMPlexDistribute()`, `DMPlexDistributeField()`, `DMPlexDistributeData()`
103770034214SMatthew G. Knepley @*/
103870034214SMatthew G. Knepley PetscErrorCode DMPlexDistributeFieldIS(DM dm, PetscSF pointSF, PetscSection originalSection, IS originalIS, PetscSection newSection, IS *newIS)
103970034214SMatthew G. Knepley {
104070034214SMatthew G. Knepley   PetscSF         fieldSF;
104170034214SMatthew G. Knepley   PetscInt       *newValues, *remoteOffsets, fieldSize;
104270034214SMatthew G. Knepley   const PetscInt *originalValues;
104370034214SMatthew G. Knepley 
104470034214SMatthew G. Knepley   PetscFunctionBegin;
10459566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(DMPLEX_DistributeField,dm,0,0,0));
10469566063dSJacob Faibussowitsch   PetscCall(PetscSFDistributeSection(pointSF, originalSection, &remoteOffsets, newSection));
104770034214SMatthew G. Knepley 
10489566063dSJacob Faibussowitsch   PetscCall(PetscSectionGetStorageSize(newSection, &fieldSize));
10499566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(fieldSize, &newValues));
105070034214SMatthew G. Knepley 
10519566063dSJacob Faibussowitsch   PetscCall(ISGetIndices(originalIS, &originalValues));
10529566063dSJacob Faibussowitsch   PetscCall(PetscSFCreateSectionSF(pointSF, originalSection, remoteOffsets, newSection, &fieldSF));
10539566063dSJacob Faibussowitsch   PetscCall(PetscFree(remoteOffsets));
10549566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastBegin(fieldSF, MPIU_INT, (PetscInt *) originalValues, newValues,MPI_REPLACE));
10559566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastEnd(fieldSF, MPIU_INT, (PetscInt *) originalValues, newValues,MPI_REPLACE));
10569566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&fieldSF));
10579566063dSJacob Faibussowitsch   PetscCall(ISRestoreIndices(originalIS, &originalValues));
10589566063dSJacob Faibussowitsch   PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject) pointSF), fieldSize, newValues, PETSC_OWN_POINTER, newIS));
10599566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(DMPLEX_DistributeField,dm,0,0,0));
106070034214SMatthew G. Knepley   PetscFunctionReturn(0);
106170034214SMatthew G. Knepley }
106270034214SMatthew G. Knepley 
106370034214SMatthew G. Knepley /*@
106470034214SMatthew G. Knepley   DMPlexDistributeData - Distribute field data to match a given PetscSF, usually the SF from mesh distribution
106570034214SMatthew G. Knepley 
1066d083f849SBarry Smith   Collective on dm
106770034214SMatthew G. Knepley 
106870034214SMatthew G. Knepley   Input Parameters:
106970034214SMatthew G. Knepley + dm - The DMPlex object
107070034214SMatthew G. Knepley . pointSF - The PetscSF describing the communication pattern
107170034214SMatthew G. Knepley . originalSection - The PetscSection for existing data layout
107270034214SMatthew G. Knepley . datatype - The type of data
107370034214SMatthew G. Knepley - originalData - The existing data
107470034214SMatthew G. Knepley 
107570034214SMatthew G. Knepley   Output Parameters:
107670034214SMatthew G. Knepley + newSection - The PetscSection describing the new data layout
107770034214SMatthew G. Knepley - newData - The new data
107870034214SMatthew G. Knepley 
107970034214SMatthew G. Knepley   Level: developer
108070034214SMatthew G. Knepley 
1081db781477SPatrick Sanan .seealso: `DMPlexDistribute()`, `DMPlexDistributeField()`
108270034214SMatthew G. Knepley @*/
108370034214SMatthew G. Knepley PetscErrorCode DMPlexDistributeData(DM dm, PetscSF pointSF, PetscSection originalSection, MPI_Datatype datatype, void *originalData, PetscSection newSection, void **newData)
108470034214SMatthew G. Knepley {
108570034214SMatthew G. Knepley   PetscSF        fieldSF;
108670034214SMatthew G. Knepley   PetscInt      *remoteOffsets, fieldSize;
108770034214SMatthew G. Knepley   PetscMPIInt    dataSize;
108870034214SMatthew G. Knepley 
108970034214SMatthew G. Knepley   PetscFunctionBegin;
10909566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(DMPLEX_DistributeData,dm,0,0,0));
10919566063dSJacob Faibussowitsch   PetscCall(PetscSFDistributeSection(pointSF, originalSection, &remoteOffsets, newSection));
109270034214SMatthew G. Knepley 
10939566063dSJacob Faibussowitsch   PetscCall(PetscSectionGetStorageSize(newSection, &fieldSize));
10949566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Type_size(datatype, &dataSize));
10959566063dSJacob Faibussowitsch   PetscCall(PetscMalloc(fieldSize * dataSize, newData));
109670034214SMatthew G. Knepley 
10979566063dSJacob Faibussowitsch   PetscCall(PetscSFCreateSectionSF(pointSF, originalSection, remoteOffsets, newSection, &fieldSF));
10989566063dSJacob Faibussowitsch   PetscCall(PetscFree(remoteOffsets));
10999566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastBegin(fieldSF, datatype, originalData, *newData,MPI_REPLACE));
11009566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastEnd(fieldSF, datatype, originalData, *newData,MPI_REPLACE));
11019566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&fieldSF));
11029566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(DMPLEX_DistributeData,dm,0,0,0));
110370034214SMatthew G. Knepley   PetscFunctionReturn(0);
110470034214SMatthew G. Knepley }
110570034214SMatthew G. Knepley 
110624cc2ca5SMatthew G. Knepley static PetscErrorCode DMPlexDistributeCones(DM dm, PetscSF migrationSF, ISLocalToGlobalMapping original, ISLocalToGlobalMapping renumbering, DM dmParallel)
1107cc71bff1SMichael Lange {
1108cc71bff1SMichael Lange   DM_Plex               *pmesh = (DM_Plex*) (dmParallel)->data;
1109cc71bff1SMichael Lange   MPI_Comm               comm;
1110cc71bff1SMichael Lange   PetscSF                coneSF;
1111cc71bff1SMichael Lange   PetscSection           originalConeSection, newConeSection;
1112ac04eaf7SToby Isaac   PetscInt              *remoteOffsets, *cones, *globCones, *newCones, newConesSize;
1113cc71bff1SMichael Lange   PetscBool              flg;
1114cc71bff1SMichael Lange 
1115cc71bff1SMichael Lange   PetscFunctionBegin;
1116cc71bff1SMichael Lange   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
11170c86c063SLisandro Dalcin   PetscValidHeaderSpecific(dmParallel, DM_CLASSID, 5);
11189566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(DMPLEX_DistributeCones,dm,0,0,0));
1119cc71bff1SMichael Lange   /* Distribute cone section */
11209566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)dm, &comm));
11219566063dSJacob Faibussowitsch   PetscCall(DMPlexGetConeSection(dm, &originalConeSection));
11229566063dSJacob Faibussowitsch   PetscCall(DMPlexGetConeSection(dmParallel, &newConeSection));
11239566063dSJacob Faibussowitsch   PetscCall(PetscSFDistributeSection(migrationSF, originalConeSection, &remoteOffsets, newConeSection));
11249566063dSJacob Faibussowitsch   PetscCall(DMSetUp(dmParallel));
1125cc71bff1SMichael Lange   /* Communicate and renumber cones */
11269566063dSJacob Faibussowitsch   PetscCall(PetscSFCreateSectionSF(migrationSF, originalConeSection, remoteOffsets, newConeSection, &coneSF));
11279566063dSJacob Faibussowitsch   PetscCall(PetscFree(remoteOffsets));
11289566063dSJacob Faibussowitsch   PetscCall(DMPlexGetCones(dm, &cones));
1129ac04eaf7SToby Isaac   if (original) {
1130ac04eaf7SToby Isaac     PetscInt numCones;
1131ac04eaf7SToby Isaac 
11329566063dSJacob Faibussowitsch     PetscCall(PetscSectionGetStorageSize(originalConeSection,&numCones));
11339566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(numCones,&globCones));
11349566063dSJacob Faibussowitsch     PetscCall(ISLocalToGlobalMappingApplyBlock(original, numCones, cones, globCones));
1135367003a6SStefano Zampini   } else {
1136ac04eaf7SToby Isaac     globCones = cones;
1137ac04eaf7SToby Isaac   }
11389566063dSJacob Faibussowitsch   PetscCall(DMPlexGetCones(dmParallel, &newCones));
11399566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastBegin(coneSF, MPIU_INT, globCones, newCones,MPI_REPLACE));
11409566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastEnd(coneSF, MPIU_INT, globCones, newCones,MPI_REPLACE));
11411baa6e33SBarry Smith   if (original) PetscCall(PetscFree(globCones));
11429566063dSJacob Faibussowitsch   PetscCall(PetscSectionGetStorageSize(newConeSection, &newConesSize));
11439566063dSJacob Faibussowitsch   PetscCall(ISGlobalToLocalMappingApplyBlock(renumbering, IS_GTOLM_MASK, newConesSize, newCones, NULL, newCones));
114476bd3646SJed Brown   if (PetscDefined(USE_DEBUG)) {
11453533c52bSMatthew G. Knepley     PetscInt  p;
11463533c52bSMatthew G. Knepley     PetscBool valid = PETSC_TRUE;
11473533c52bSMatthew G. Knepley     for (p = 0; p < newConesSize; ++p) {
114863a3b9bcSJacob Faibussowitsch       if (newCones[p] < 0) {valid = PETSC_FALSE; PetscCall(PetscPrintf(PETSC_COMM_SELF, "[%d] Point %" PetscInt_FMT " not in overlap SF\n", PetscGlobalRank,p));}
11493533c52bSMatthew G. Knepley     }
115028b400f6SJacob Faibussowitsch     PetscCheck(valid,PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Invalid global to local map");
11513533c52bSMatthew G. Knepley   }
11529566063dSJacob Faibussowitsch   PetscCall(PetscOptionsHasName(((PetscObject) dm)->options,((PetscObject) dm)->prefix, "-cones_view", &flg));
1153cc71bff1SMichael Lange   if (flg) {
11549566063dSJacob Faibussowitsch     PetscCall(PetscPrintf(comm, "Serial Cone Section:\n"));
11559566063dSJacob Faibussowitsch     PetscCall(PetscSectionView(originalConeSection, PETSC_VIEWER_STDOUT_(comm)));
11569566063dSJacob Faibussowitsch     PetscCall(PetscPrintf(comm, "Parallel Cone Section:\n"));
11579566063dSJacob Faibussowitsch     PetscCall(PetscSectionView(newConeSection, PETSC_VIEWER_STDOUT_(comm)));
11589566063dSJacob Faibussowitsch     PetscCall(PetscSFView(coneSF, NULL));
1159cc71bff1SMichael Lange   }
11609566063dSJacob Faibussowitsch   PetscCall(DMPlexGetConeOrientations(dm, &cones));
11619566063dSJacob Faibussowitsch   PetscCall(DMPlexGetConeOrientations(dmParallel, &newCones));
11629566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastBegin(coneSF, MPIU_INT, cones, newCones,MPI_REPLACE));
11639566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastEnd(coneSF, MPIU_INT, cones, newCones,MPI_REPLACE));
11649566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&coneSF));
11659566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(DMPLEX_DistributeCones,dm,0,0,0));
1166eaf898f9SPatrick Sanan   /* Create supports and stratify DMPlex */
1167cc71bff1SMichael Lange   {
1168cc71bff1SMichael Lange     PetscInt pStart, pEnd;
1169cc71bff1SMichael Lange 
11709566063dSJacob Faibussowitsch     PetscCall(PetscSectionGetChart(pmesh->coneSection, &pStart, &pEnd));
11719566063dSJacob Faibussowitsch     PetscCall(PetscSectionSetChart(pmesh->supportSection, pStart, pEnd));
1172cc71bff1SMichael Lange   }
11739566063dSJacob Faibussowitsch   PetscCall(DMPlexSymmetrize(dmParallel));
11749566063dSJacob Faibussowitsch   PetscCall(DMPlexStratify(dmParallel));
11751cf84007SMatthew G. Knepley   {
11761cf84007SMatthew G. Knepley     PetscBool useCone, useClosure, useAnchors;
11771cf84007SMatthew G. Knepley 
11789566063dSJacob Faibussowitsch     PetscCall(DMGetBasicAdjacency(dm, &useCone, &useClosure));
11799566063dSJacob Faibussowitsch     PetscCall(DMSetBasicAdjacency(dmParallel, useCone, useClosure));
11809566063dSJacob Faibussowitsch     PetscCall(DMPlexGetAdjacencyUseAnchors(dm, &useAnchors));
11819566063dSJacob Faibussowitsch     PetscCall(DMPlexSetAdjacencyUseAnchors(dmParallel, useAnchors));
11821cf84007SMatthew G. Knepley   }
1183cc71bff1SMichael Lange   PetscFunctionReturn(0);
1184cc71bff1SMichael Lange }
1185cc71bff1SMichael Lange 
118624cc2ca5SMatthew G. Knepley static PetscErrorCode DMPlexDistributeCoordinates(DM dm, PetscSF migrationSF, DM dmParallel)
11870df0e737SMichael Lange {
11880df0e737SMichael Lange   MPI_Comm         comm;
11899318fe57SMatthew G. Knepley   DM               cdm, cdmParallel;
11900df0e737SMichael Lange   PetscSection     originalCoordSection, newCoordSection;
11910df0e737SMichael Lange   Vec              originalCoordinates, newCoordinates;
11920df0e737SMichael Lange   PetscInt         bs;
11930df0e737SMichael Lange   const char      *name;
1194*4fb89dddSMatthew G. Knepley   const PetscReal *maxCell, *Lstart, *L;
11950df0e737SMichael Lange 
11960df0e737SMichael Lange   PetscFunctionBegin;
11970df0e737SMichael Lange   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
11980c86c063SLisandro Dalcin   PetscValidHeaderSpecific(dmParallel, DM_CLASSID, 3);
11990df0e737SMichael Lange 
12009566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)dm, &comm));
12016858538eSMatthew G. Knepley   PetscCall(DMGetCoordinateDM(dm, &cdm));
12026858538eSMatthew G. Knepley   PetscCall(DMGetCoordinateDM(dmParallel, &cdmParallel));
12036858538eSMatthew G. Knepley   PetscCall(DMCopyDisc(cdm, cdmParallel));
12049566063dSJacob Faibussowitsch   PetscCall(DMGetCoordinateSection(dm, &originalCoordSection));
12059566063dSJacob Faibussowitsch   PetscCall(DMGetCoordinateSection(dmParallel, &newCoordSection));
12069566063dSJacob Faibussowitsch   PetscCall(DMGetCoordinatesLocal(dm, &originalCoordinates));
12070df0e737SMichael Lange   if (originalCoordinates) {
12089566063dSJacob Faibussowitsch     PetscCall(VecCreate(PETSC_COMM_SELF, &newCoordinates));
12099566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetName((PetscObject) originalCoordinates, &name));
12109566063dSJacob Faibussowitsch     PetscCall(PetscObjectSetName((PetscObject) newCoordinates, name));
12110df0e737SMichael Lange 
12129566063dSJacob Faibussowitsch     PetscCall(DMPlexDistributeField(dm, migrationSF, originalCoordSection, originalCoordinates, newCoordSection, newCoordinates));
12139566063dSJacob Faibussowitsch     PetscCall(DMSetCoordinatesLocal(dmParallel, newCoordinates));
12149566063dSJacob Faibussowitsch     PetscCall(VecGetBlockSize(originalCoordinates, &bs));
12159566063dSJacob Faibussowitsch     PetscCall(VecSetBlockSize(newCoordinates, bs));
12169566063dSJacob Faibussowitsch     PetscCall(VecDestroy(&newCoordinates));
12170df0e737SMichael Lange   }
12186858538eSMatthew G. Knepley 
12196858538eSMatthew G. Knepley   PetscCall(PetscObjectGetComm((PetscObject)dm, &comm));
1220*4fb89dddSMatthew G. Knepley   PetscCall(DMGetPeriodicity(dm, &maxCell, &Lstart, &L));
1221*4fb89dddSMatthew G. Knepley   PetscCall(DMSetPeriodicity(dmParallel, maxCell, Lstart, L));
12226858538eSMatthew G. Knepley   PetscCall(DMGetCellCoordinateDM(dm, &cdm));
12236858538eSMatthew G. Knepley   if (cdm) {
12246858538eSMatthew G. Knepley     PetscCall(DMClone(dmParallel, &cdmParallel));
12256858538eSMatthew G. Knepley     PetscCall(DMSetCellCoordinateDM(dmParallel, cdmParallel));
12269566063dSJacob Faibussowitsch     PetscCall(DMCopyDisc(cdm, cdmParallel));
12276858538eSMatthew G. Knepley     PetscCall(DMDestroy(&cdmParallel));
12286858538eSMatthew G. Knepley     PetscCall(DMGetCellCoordinateSection(dm, &originalCoordSection));
12296858538eSMatthew G. Knepley     PetscCall(DMGetCellCoordinatesLocal(dm, &originalCoordinates));
12306858538eSMatthew G. Knepley     PetscCall(PetscSectionCreate(comm, &newCoordSection));
12316858538eSMatthew G. Knepley     if (originalCoordinates) {
12326858538eSMatthew G. Knepley       PetscCall(VecCreate(PETSC_COMM_SELF, &newCoordinates));
12336858538eSMatthew G. Knepley       PetscCall(PetscObjectGetName((PetscObject) originalCoordinates, &name));
12346858538eSMatthew G. Knepley       PetscCall(PetscObjectSetName((PetscObject) newCoordinates, name));
12356858538eSMatthew G. Knepley 
12366858538eSMatthew G. Knepley       PetscCall(DMPlexDistributeField(dm, migrationSF, originalCoordSection, originalCoordinates, newCoordSection, newCoordinates));
12376858538eSMatthew G. Knepley       PetscCall(VecGetBlockSize(originalCoordinates, &bs));
12386858538eSMatthew G. Knepley       PetscCall(VecSetBlockSize(newCoordinates, bs));
12396858538eSMatthew G. Knepley       PetscCall(DMSetCellCoordinateSection(dmParallel, bs, newCoordSection));
12406858538eSMatthew G. Knepley       PetscCall(DMSetCellCoordinatesLocal(dmParallel, newCoordinates));
12416858538eSMatthew G. Knepley       PetscCall(VecDestroy(&newCoordinates));
12426858538eSMatthew G. Knepley     }
12436858538eSMatthew G. Knepley     PetscCall(PetscSectionDestroy(&newCoordSection));
12446858538eSMatthew G. Knepley   }
12450df0e737SMichael Lange   PetscFunctionReturn(0);
12460df0e737SMichael Lange }
12470df0e737SMichael Lange 
124824cc2ca5SMatthew G. Knepley static PetscErrorCode DMPlexDistributeLabels(DM dm, PetscSF migrationSF, DM dmParallel)
12490df0e737SMichael Lange {
1250df0420ecSMatthew G. Knepley   DM_Plex         *mesh = (DM_Plex*) dm->data;
12510df0e737SMichael Lange   MPI_Comm         comm;
12527980c9d4SMatthew G. Knepley   DMLabel          depthLabel;
12530df0e737SMichael Lange   PetscMPIInt      rank;
12547980c9d4SMatthew G. Knepley   PetscInt         depth, d, numLabels, numLocalLabels, l;
1255df0420ecSMatthew G. Knepley   PetscBool        hasLabels = PETSC_FALSE, lsendDepth, sendDepth;
1256df0420ecSMatthew G. Knepley   PetscObjectState depthState = -1;
12570df0e737SMichael Lange 
12580df0e737SMichael Lange   PetscFunctionBegin;
12590df0e737SMichael Lange   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
12600c86c063SLisandro Dalcin   PetscValidHeaderSpecific(dmParallel, DM_CLASSID, 3);
12610c86c063SLisandro Dalcin 
12629566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(DMPLEX_DistributeLabels,dm,0,0,0));
12639566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)dm, &comm));
12649566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(comm, &rank));
12650df0e737SMichael Lange 
1266df0420ecSMatthew G. Knepley   /* If the user has changed the depth label, communicate it instead */
12679566063dSJacob Faibussowitsch   PetscCall(DMPlexGetDepth(dm, &depth));
12689566063dSJacob Faibussowitsch   PetscCall(DMPlexGetDepthLabel(dm, &depthLabel));
12699566063dSJacob Faibussowitsch   if (depthLabel) PetscCall(PetscObjectStateGet((PetscObject) depthLabel, &depthState));
1270df0420ecSMatthew G. Knepley   lsendDepth = mesh->depthState != depthState ? PETSC_TRUE : PETSC_FALSE;
12711c2dc1cbSBarry Smith   PetscCall(MPIU_Allreduce(&lsendDepth, &sendDepth, 1, MPIU_BOOL, MPI_LOR, comm));
1272df0420ecSMatthew G. Knepley   if (sendDepth) {
12739566063dSJacob Faibussowitsch     PetscCall(DMPlexGetDepthLabel(dmParallel, &dmParallel->depthLabel));
12749566063dSJacob Faibussowitsch     PetscCall(DMRemoveLabelBySelf(dmParallel, &dmParallel->depthLabel, PETSC_FALSE));
1275df0420ecSMatthew G. Knepley   }
1276d995df53SMatthew G. Knepley   /* Everyone must have either the same number of labels, or none */
12779566063dSJacob Faibussowitsch   PetscCall(DMGetNumLabels(dm, &numLocalLabels));
1278d995df53SMatthew G. Knepley   numLabels = numLocalLabels;
12799566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Bcast(&numLabels, 1, MPIU_INT, 0, comm));
1280627847f0SMatthew G. Knepley   if (numLabels == numLocalLabels) hasLabels = PETSC_TRUE;
12815d80c0bfSVaclav Hapla   for (l = 0; l < numLabels; ++l) {
1282bdd2d751SMichael Lange     DMLabel     label = NULL, labelNew = NULL;
128383e10cb3SLisandro Dalcin     PetscBool   isDepth, lisOutput = PETSC_TRUE, isOutput;
1284d67d17b1SMatthew G. Knepley     const char *name = NULL;
12850df0e737SMichael Lange 
1286d67d17b1SMatthew G. Knepley     if (hasLabels) {
12879566063dSJacob Faibussowitsch       PetscCall(DMGetLabelByNum(dm, l, &label));
12880df0e737SMichael Lange       /* Skip "depth" because it is recreated */
12899566063dSJacob Faibussowitsch       PetscCall(PetscObjectGetName((PetscObject) label, &name));
12909566063dSJacob Faibussowitsch       PetscCall(PetscStrcmp(name, "depth", &isDepth));
1291d67d17b1SMatthew G. Knepley     }
12929566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Bcast(&isDepth, 1, MPIU_BOOL, 0, comm));
129383e10cb3SLisandro Dalcin     if (isDepth && !sendDepth) continue;
12949566063dSJacob Faibussowitsch     PetscCall(DMLabelDistribute(label, migrationSF, &labelNew));
129583e10cb3SLisandro Dalcin     if (isDepth) {
12967980c9d4SMatthew G. Knepley       /* Put in any missing strata which can occur if users are managing the depth label themselves */
12977980c9d4SMatthew G. Knepley       PetscInt gdepth;
12987980c9d4SMatthew G. Knepley 
12991c2dc1cbSBarry Smith       PetscCall(MPIU_Allreduce(&depth, &gdepth, 1, MPIU_INT, MPI_MAX, comm));
130063a3b9bcSJacob Faibussowitsch       PetscCheck(!(depth >= 0) || !(gdepth != depth),PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Inconsistent Plex depth %" PetscInt_FMT " != %" PetscInt_FMT, depth, gdepth);
13017980c9d4SMatthew G. Knepley       for (d = 0; d <= gdepth; ++d) {
13027980c9d4SMatthew G. Knepley         PetscBool has;
13037980c9d4SMatthew G. Knepley 
13049566063dSJacob Faibussowitsch         PetscCall(DMLabelHasStratum(labelNew, d, &has));
13059566063dSJacob Faibussowitsch         if (!has) PetscCall(DMLabelAddStratum(labelNew, d));
13067980c9d4SMatthew G. Knepley       }
13077980c9d4SMatthew G. Knepley     }
13089566063dSJacob Faibussowitsch     PetscCall(DMAddLabel(dmParallel, labelNew));
130983e10cb3SLisandro Dalcin     /* Put the output flag in the new label */
13109566063dSJacob Faibussowitsch     if (hasLabels) PetscCall(DMGetLabelOutput(dm, name, &lisOutput));
13111c2dc1cbSBarry Smith     PetscCall(MPIU_Allreduce(&lisOutput, &isOutput, 1, MPIU_BOOL, MPI_LAND, comm));
13129566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetName((PetscObject) labelNew, &name));
13139566063dSJacob Faibussowitsch     PetscCall(DMSetLabelOutput(dmParallel, name, isOutput));
13149566063dSJacob Faibussowitsch     PetscCall(DMLabelDestroy(&labelNew));
13150df0e737SMichael Lange   }
13169566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(DMPLEX_DistributeLabels,dm,0,0,0));
13170df0e737SMichael Lange   PetscFunctionReturn(0);
13180df0e737SMichael Lange }
13190df0e737SMichael Lange 
132024cc2ca5SMatthew G. Knepley static PetscErrorCode DMPlexDistributeSetupTree(DM dm, PetscSF migrationSF, ISLocalToGlobalMapping original, ISLocalToGlobalMapping renumbering, DM dmParallel)
1321a6f36705SMichael Lange {
132215078cd4SMichael Lange   DM_Plex        *mesh  = (DM_Plex*) dm->data;
132315078cd4SMichael Lange   DM_Plex        *pmesh = (DM_Plex*) (dmParallel)->data;
1324a6f36705SMichael Lange   MPI_Comm        comm;
1325a6f36705SMichael Lange   DM              refTree;
1326a6f36705SMichael Lange   PetscSection    origParentSection, newParentSection;
1327a6f36705SMichael Lange   PetscInt        *origParents, *origChildIDs;
1328a6f36705SMichael Lange   PetscBool       flg;
1329a6f36705SMichael Lange 
1330a6f36705SMichael Lange   PetscFunctionBegin;
1331a6f36705SMichael Lange   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
13320c86c063SLisandro Dalcin   PetscValidHeaderSpecific(dmParallel, DM_CLASSID, 5);
13339566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)dm, &comm));
1334a6f36705SMichael Lange 
1335a6f36705SMichael Lange   /* Set up tree */
13369566063dSJacob Faibussowitsch   PetscCall(DMPlexGetReferenceTree(dm,&refTree));
13379566063dSJacob Faibussowitsch   PetscCall(DMPlexSetReferenceTree(dmParallel,refTree));
13389566063dSJacob Faibussowitsch   PetscCall(DMPlexGetTree(dm,&origParentSection,&origParents,&origChildIDs,NULL,NULL));
1339a6f36705SMichael Lange   if (origParentSection) {
1340a6f36705SMichael Lange     PetscInt        pStart, pEnd;
134108633170SToby Isaac     PetscInt        *newParents, *newChildIDs, *globParents;
1342a6f36705SMichael Lange     PetscInt        *remoteOffsetsParents, newParentSize;
1343a6f36705SMichael Lange     PetscSF         parentSF;
1344a6f36705SMichael Lange 
13459566063dSJacob Faibussowitsch     PetscCall(DMPlexGetChart(dmParallel, &pStart, &pEnd));
13469566063dSJacob Faibussowitsch     PetscCall(PetscSectionCreate(PetscObjectComm((PetscObject)dmParallel),&newParentSection));
13479566063dSJacob Faibussowitsch     PetscCall(PetscSectionSetChart(newParentSection,pStart,pEnd));
13489566063dSJacob Faibussowitsch     PetscCall(PetscSFDistributeSection(migrationSF, origParentSection, &remoteOffsetsParents, newParentSection));
13499566063dSJacob Faibussowitsch     PetscCall(PetscSFCreateSectionSF(migrationSF, origParentSection, remoteOffsetsParents, newParentSection, &parentSF));
13509566063dSJacob Faibussowitsch     PetscCall(PetscFree(remoteOffsetsParents));
13519566063dSJacob Faibussowitsch     PetscCall(PetscSectionGetStorageSize(newParentSection,&newParentSize));
13529566063dSJacob Faibussowitsch     PetscCall(PetscMalloc2(newParentSize,&newParents,newParentSize,&newChildIDs));
135308633170SToby Isaac     if (original) {
135408633170SToby Isaac       PetscInt numParents;
135508633170SToby Isaac 
13569566063dSJacob Faibussowitsch       PetscCall(PetscSectionGetStorageSize(origParentSection,&numParents));
13579566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(numParents,&globParents));
13589566063dSJacob Faibussowitsch       PetscCall(ISLocalToGlobalMappingApplyBlock(original, numParents, origParents, globParents));
135908633170SToby Isaac     }
136008633170SToby Isaac     else {
136108633170SToby Isaac       globParents = origParents;
136208633170SToby Isaac     }
13639566063dSJacob Faibussowitsch     PetscCall(PetscSFBcastBegin(parentSF, MPIU_INT, globParents, newParents,MPI_REPLACE));
13649566063dSJacob Faibussowitsch     PetscCall(PetscSFBcastEnd(parentSF, MPIU_INT, globParents, newParents,MPI_REPLACE));
13651baa6e33SBarry Smith     if (original) PetscCall(PetscFree(globParents));
13669566063dSJacob Faibussowitsch     PetscCall(PetscSFBcastBegin(parentSF, MPIU_INT, origChildIDs, newChildIDs,MPI_REPLACE));
13679566063dSJacob Faibussowitsch     PetscCall(PetscSFBcastEnd(parentSF, MPIU_INT, origChildIDs, newChildIDs,MPI_REPLACE));
13689566063dSJacob Faibussowitsch     PetscCall(ISGlobalToLocalMappingApplyBlock(renumbering,IS_GTOLM_MASK, newParentSize, newParents, NULL, newParents));
136976bd3646SJed Brown     if (PetscDefined(USE_DEBUG)) {
13704a54e071SToby Isaac       PetscInt  p;
13714a54e071SToby Isaac       PetscBool valid = PETSC_TRUE;
13724a54e071SToby Isaac       for (p = 0; p < newParentSize; ++p) {
137363a3b9bcSJacob Faibussowitsch         if (newParents[p] < 0) {valid = PETSC_FALSE; PetscCall(PetscPrintf(PETSC_COMM_SELF, "Point %" PetscInt_FMT " not in overlap SF\n", p));}
13744a54e071SToby Isaac       }
137528b400f6SJacob Faibussowitsch       PetscCheck(valid,PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Invalid global to local map");
13764a54e071SToby Isaac     }
13779566063dSJacob Faibussowitsch     PetscCall(PetscOptionsHasName(((PetscObject) dm)->options,((PetscObject) dm)->prefix, "-parents_view", &flg));
1378a6f36705SMichael Lange     if (flg) {
13799566063dSJacob Faibussowitsch       PetscCall(PetscPrintf(comm, "Serial Parent Section: \n"));
13809566063dSJacob Faibussowitsch       PetscCall(PetscSectionView(origParentSection, PETSC_VIEWER_STDOUT_(comm)));
13819566063dSJacob Faibussowitsch       PetscCall(PetscPrintf(comm, "Parallel Parent Section: \n"));
13829566063dSJacob Faibussowitsch       PetscCall(PetscSectionView(newParentSection, PETSC_VIEWER_STDOUT_(comm)));
13839566063dSJacob Faibussowitsch       PetscCall(PetscSFView(parentSF, NULL));
1384a6f36705SMichael Lange     }
13859566063dSJacob Faibussowitsch     PetscCall(DMPlexSetTree(dmParallel,newParentSection,newParents,newChildIDs));
13869566063dSJacob Faibussowitsch     PetscCall(PetscSectionDestroy(&newParentSection));
13879566063dSJacob Faibussowitsch     PetscCall(PetscFree2(newParents,newChildIDs));
13889566063dSJacob Faibussowitsch     PetscCall(PetscSFDestroy(&parentSF));
1389a6f36705SMichael Lange   }
139015078cd4SMichael Lange   pmesh->useAnchors = mesh->useAnchors;
1391a6f36705SMichael Lange   PetscFunctionReturn(0);
1392a6f36705SMichael Lange }
13930df0e737SMichael Lange 
139424cc2ca5SMatthew G. Knepley PETSC_UNUSED static PetscErrorCode DMPlexDistributeSF(DM dm, PetscSF migrationSF, DM dmParallel)
13954eca1733SMichael Lange {
13969852e123SBarry Smith   PetscMPIInt            rank, size;
13974eca1733SMichael Lange   MPI_Comm               comm;
13984eca1733SMichael Lange 
13994eca1733SMichael Lange   PetscFunctionBegin;
14004eca1733SMichael Lange   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
14010c86c063SLisandro Dalcin   PetscValidHeaderSpecific(dmParallel, DM_CLASSID, 3);
14024eca1733SMichael Lange 
14034eca1733SMichael Lange   /* Create point SF for parallel mesh */
14049566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(DMPLEX_DistributeSF,dm,0,0,0));
14059566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)dm, &comm));
14069566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(comm, &rank));
14079566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
14084eca1733SMichael Lange   {
14094eca1733SMichael Lange     const PetscInt *leaves;
14104eca1733SMichael Lange     PetscSFNode    *remotePoints, *rowners, *lowners;
14114eca1733SMichael Lange     PetscInt        numRoots, numLeaves, numGhostPoints = 0, p, gp, *ghostPoints;
14124eca1733SMichael Lange     PetscInt        pStart, pEnd;
14134eca1733SMichael Lange 
14149566063dSJacob Faibussowitsch     PetscCall(DMPlexGetChart(dmParallel, &pStart, &pEnd));
14159566063dSJacob Faibussowitsch     PetscCall(PetscSFGetGraph(migrationSF, &numRoots, &numLeaves, &leaves, NULL));
14169566063dSJacob Faibussowitsch     PetscCall(PetscMalloc2(numRoots,&rowners,numLeaves,&lowners));
14174eca1733SMichael Lange     for (p=0; p<numRoots; p++) {
14184eca1733SMichael Lange       rowners[p].rank  = -1;
14194eca1733SMichael Lange       rowners[p].index = -1;
14204eca1733SMichael Lange     }
14219566063dSJacob Faibussowitsch     PetscCall(PetscSFBcastBegin(migrationSF, MPIU_2INT, rowners, lowners,MPI_REPLACE));
14229566063dSJacob Faibussowitsch     PetscCall(PetscSFBcastEnd(migrationSF, MPIU_2INT, rowners, lowners,MPI_REPLACE));
14234eca1733SMichael Lange     for (p = 0; p < numLeaves; ++p) {
14244eca1733SMichael Lange       if (lowners[p].rank < 0 || lowners[p].rank == rank) { /* Either put in a bid or we know we own it */
14254eca1733SMichael Lange         lowners[p].rank  = rank;
14264eca1733SMichael Lange         lowners[p].index = leaves ? leaves[p] : p;
14274eca1733SMichael Lange       } else if (lowners[p].rank >= 0) { /* Point already claimed so flag so that MAXLOC does not listen to us */
14284eca1733SMichael Lange         lowners[p].rank  = -2;
14294eca1733SMichael Lange         lowners[p].index = -2;
14304eca1733SMichael Lange       }
14314eca1733SMichael Lange     }
14324eca1733SMichael Lange     for (p=0; p<numRoots; p++) { /* Root must not participate in the rediction, flag so that MAXLOC does not use */
14334eca1733SMichael Lange       rowners[p].rank  = -3;
14344eca1733SMichael Lange       rowners[p].index = -3;
14354eca1733SMichael Lange     }
14369566063dSJacob Faibussowitsch     PetscCall(PetscSFReduceBegin(migrationSF, MPIU_2INT, lowners, rowners, MPI_MAXLOC));
14379566063dSJacob Faibussowitsch     PetscCall(PetscSFReduceEnd(migrationSF, MPIU_2INT, lowners, rowners, MPI_MAXLOC));
14389566063dSJacob Faibussowitsch     PetscCall(PetscSFBcastBegin(migrationSF, MPIU_2INT, rowners, lowners,MPI_REPLACE));
14399566063dSJacob Faibussowitsch     PetscCall(PetscSFBcastEnd(migrationSF, MPIU_2INT, rowners, lowners,MPI_REPLACE));
14404eca1733SMichael Lange     for (p = 0; p < numLeaves; ++p) {
14411dca8a05SBarry Smith       PetscCheck(lowners[p].rank >= 0 && lowners[p].index >= 0,PETSC_COMM_SELF,PETSC_ERR_PLIB,"Cell partition corrupt: point not claimed");
14424eca1733SMichael Lange       if (lowners[p].rank != rank) ++numGhostPoints;
14434eca1733SMichael Lange     }
14449566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(numGhostPoints, &ghostPoints));
14459566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(numGhostPoints, &remotePoints));
14464eca1733SMichael Lange     for (p = 0, gp = 0; p < numLeaves; ++p) {
14474eca1733SMichael Lange       if (lowners[p].rank != rank) {
14484eca1733SMichael Lange         ghostPoints[gp]        = leaves ? leaves[p] : p;
14494eca1733SMichael Lange         remotePoints[gp].rank  = lowners[p].rank;
14504eca1733SMichael Lange         remotePoints[gp].index = lowners[p].index;
14514eca1733SMichael Lange         ++gp;
14524eca1733SMichael Lange       }
14534eca1733SMichael Lange     }
14549566063dSJacob Faibussowitsch     PetscCall(PetscFree2(rowners,lowners));
14559566063dSJacob Faibussowitsch     PetscCall(PetscSFSetGraph((dmParallel)->sf, pEnd - pStart, numGhostPoints, ghostPoints, PETSC_OWN_POINTER, remotePoints, PETSC_OWN_POINTER));
14569566063dSJacob Faibussowitsch     PetscCall(PetscSFSetFromOptions((dmParallel)->sf));
14574eca1733SMichael Lange   }
14581cf84007SMatthew G. Knepley   {
14591cf84007SMatthew G. Knepley     PetscBool useCone, useClosure, useAnchors;
14601cf84007SMatthew G. Knepley 
14619566063dSJacob Faibussowitsch     PetscCall(DMGetBasicAdjacency(dm, &useCone, &useClosure));
14629566063dSJacob Faibussowitsch     PetscCall(DMSetBasicAdjacency(dmParallel, useCone, useClosure));
14639566063dSJacob Faibussowitsch     PetscCall(DMPlexGetAdjacencyUseAnchors(dm, &useAnchors));
14649566063dSJacob Faibussowitsch     PetscCall(DMPlexSetAdjacencyUseAnchors(dmParallel, useAnchors));
14651cf84007SMatthew G. Knepley   }
14669566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(DMPLEX_DistributeSF,dm,0,0,0));
14674eca1733SMichael Lange   PetscFunctionReturn(0);
14684eca1733SMichael Lange }
14694eca1733SMichael Lange 
147098ba2d7fSLawrence Mitchell /*@
147198ba2d7fSLawrence Mitchell   DMPlexSetPartitionBalance - Should distribution of the DM attempt to balance the shared point partition?
147298ba2d7fSLawrence Mitchell 
147398ba2d7fSLawrence Mitchell   Input Parameters:
147498ba2d7fSLawrence Mitchell + dm - The DMPlex object
147598ba2d7fSLawrence Mitchell - flg - Balance the partition?
147698ba2d7fSLawrence Mitchell 
147798ba2d7fSLawrence Mitchell   Level: intermediate
147898ba2d7fSLawrence Mitchell 
1479db781477SPatrick Sanan .seealso: `DMPlexDistribute()`, `DMPlexGetPartitionBalance()`
148098ba2d7fSLawrence Mitchell @*/
148198ba2d7fSLawrence Mitchell PetscErrorCode DMPlexSetPartitionBalance(DM dm, PetscBool flg)
148298ba2d7fSLawrence Mitchell {
148398ba2d7fSLawrence Mitchell   DM_Plex *mesh = (DM_Plex *)dm->data;
148498ba2d7fSLawrence Mitchell 
148598ba2d7fSLawrence Mitchell   PetscFunctionBegin;
148698ba2d7fSLawrence Mitchell   mesh->partitionBalance = flg;
148798ba2d7fSLawrence Mitchell   PetscFunctionReturn(0);
148898ba2d7fSLawrence Mitchell }
148998ba2d7fSLawrence Mitchell 
149098ba2d7fSLawrence Mitchell /*@
149198ba2d7fSLawrence Mitchell   DMPlexGetPartitionBalance - Does distribution of the DM attempt to balance the shared point partition?
149298ba2d7fSLawrence Mitchell 
149398ba2d7fSLawrence Mitchell   Input Parameter:
1494a2b725a8SWilliam Gropp . dm - The DMPlex object
149598ba2d7fSLawrence Mitchell 
149698ba2d7fSLawrence Mitchell   Output Parameter:
1497a2b725a8SWilliam Gropp . flg - Balance the partition?
149898ba2d7fSLawrence Mitchell 
149998ba2d7fSLawrence Mitchell   Level: intermediate
150098ba2d7fSLawrence Mitchell 
1501db781477SPatrick Sanan .seealso: `DMPlexDistribute()`, `DMPlexSetPartitionBalance()`
150298ba2d7fSLawrence Mitchell @*/
150398ba2d7fSLawrence Mitchell PetscErrorCode DMPlexGetPartitionBalance(DM dm, PetscBool *flg)
150498ba2d7fSLawrence Mitchell {
150598ba2d7fSLawrence Mitchell   DM_Plex *mesh = (DM_Plex *)dm->data;
150698ba2d7fSLawrence Mitchell 
150798ba2d7fSLawrence Mitchell   PetscFunctionBegin;
150898ba2d7fSLawrence Mitchell   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
1509534a8f05SLisandro Dalcin   PetscValidBoolPointer(flg, 2);
151098ba2d7fSLawrence Mitchell   *flg = mesh->partitionBalance;
151198ba2d7fSLawrence Mitchell   PetscFunctionReturn(0);
151298ba2d7fSLawrence Mitchell }
151398ba2d7fSLawrence Mitchell 
1514fc02256fSLawrence Mitchell typedef struct {
1515fc02256fSLawrence Mitchell   PetscInt vote, rank, index;
1516fc02256fSLawrence Mitchell } Petsc3Int;
1517fc02256fSLawrence Mitchell 
1518fc02256fSLawrence Mitchell /* MaxLoc, but carry a third piece of information around */
15192eb0eadbSSatish Balay static void MPIAPI MaxLocCarry(void *in_, void *inout_, PetscMPIInt *len_, MPI_Datatype *dtype)
1520fc02256fSLawrence Mitchell {
1521fc02256fSLawrence Mitchell   Petsc3Int *a = (Petsc3Int *)inout_;
1522fc02256fSLawrence Mitchell   Petsc3Int *b = (Petsc3Int *)in_;
1523fc02256fSLawrence Mitchell   PetscInt i, len = *len_;
1524fc02256fSLawrence Mitchell   for (i = 0; i < len; i++) {
1525fc02256fSLawrence Mitchell     if (a[i].vote < b[i].vote) {
1526fc02256fSLawrence Mitchell       a[i].vote = b[i].vote;
1527fc02256fSLawrence Mitchell       a[i].rank = b[i].rank;
1528fc02256fSLawrence Mitchell       a[i].index = b[i].index;
1529fc02256fSLawrence Mitchell     } else if (a[i].vote <= b[i].vote) {
1530fc02256fSLawrence Mitchell       if (a[i].rank >= b[i].rank) {
1531fc02256fSLawrence Mitchell         a[i].rank = b[i].rank;
1532fc02256fSLawrence Mitchell         a[i].index = b[i].index;
1533fc02256fSLawrence Mitchell       }
1534fc02256fSLawrence Mitchell     }
1535fc02256fSLawrence Mitchell   }
1536fc02256fSLawrence Mitchell }
1537fc02256fSLawrence Mitchell 
1538f5bf2dbfSMichael Lange /*@C
1539a8c5bd36SStefano Zampini   DMPlexCreatePointSF - Build a point SF from an SF describing a point migration
1540f5bf2dbfSMichael Lange 
1541064ec1f3Sprj-   Input Parameters:
1542f5bf2dbfSMichael Lange + dm          - The source DMPlex object
1543f5bf2dbfSMichael Lange . migrationSF - The star forest that describes the parallel point remapping
1544d8d19677SJose E. Roman - ownership   - Flag causing a vote to determine point ownership
1545f5bf2dbfSMichael Lange 
1546f5bf2dbfSMichael Lange   Output Parameter:
1547d8d19677SJose E. Roman . pointSF     - The star forest describing the point overlap in the remapped DM
1548f5bf2dbfSMichael Lange 
15493618482eSVaclav Hapla   Notes:
15503618482eSVaclav Hapla   Output pointSF is guaranteed to have the array of local indices (leaves) sorted.
15513618482eSVaclav Hapla 
1552f5bf2dbfSMichael Lange   Level: developer
1553f5bf2dbfSMichael Lange 
1554db781477SPatrick Sanan .seealso: `DMPlexDistribute()`, `DMPlexDistributeOverlap()`
1555f5bf2dbfSMichael Lange @*/
1556f5bf2dbfSMichael Lange PetscErrorCode DMPlexCreatePointSF(DM dm, PetscSF migrationSF, PetscBool ownership, PetscSF *pointSF)
1557f5bf2dbfSMichael Lange {
155823193802SMatthew G. Knepley   PetscMPIInt        rank, size;
15591627f6ccSMichael Lange   PetscInt           p, nroots, nleaves, idx, npointLeaves;
1560f5bf2dbfSMichael Lange   PetscInt          *pointLocal;
1561f5bf2dbfSMichael Lange   const PetscInt    *leaves;
1562f5bf2dbfSMichael Lange   const PetscSFNode *roots;
1563f5bf2dbfSMichael Lange   PetscSFNode       *rootNodes, *leafNodes, *pointRemote;
156423193802SMatthew G. Knepley   Vec                shifts;
1565cae3e4f3SLawrence Mitchell   const PetscInt     numShifts = 13759;
156623193802SMatthew G. Knepley   const PetscScalar *shift = NULL;
156723193802SMatthew G. Knepley   const PetscBool    shiftDebug = PETSC_FALSE;
156898ba2d7fSLawrence Mitchell   PetscBool          balance;
1569f5bf2dbfSMichael Lange 
1570f5bf2dbfSMichael Lange   PetscFunctionBegin;
1571f5bf2dbfSMichael Lange   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
15729566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject) dm), &rank));
15739566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject) dm), &size));
15749566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(DMPLEX_CreatePointSF,dm,0,0,0));
1575f5bf2dbfSMichael Lange 
15769566063dSJacob Faibussowitsch   PetscCall(DMPlexGetPartitionBalance(dm, &balance));
15779566063dSJacob Faibussowitsch   PetscCall(PetscSFGetGraph(migrationSF, &nroots, &nleaves, &leaves, &roots));
15789566063dSJacob Faibussowitsch   PetscCall(PetscMalloc2(nroots, &rootNodes, nleaves, &leafNodes));
1579f5bf2dbfSMichael Lange   if (ownership) {
1580fc02256fSLawrence Mitchell     MPI_Op       op;
1581fc02256fSLawrence Mitchell     MPI_Datatype datatype;
1582fc02256fSLawrence Mitchell     Petsc3Int   *rootVote = NULL, *leafVote = NULL;
158323193802SMatthew G. Knepley     /* If balancing, we compute a random cyclic shift of the rank for each remote point. That way, the max will evenly distribute among ranks. */
158498ba2d7fSLawrence Mitchell     if (balance) {
158523193802SMatthew G. Knepley       PetscRandom r;
158623193802SMatthew G. Knepley 
15879566063dSJacob Faibussowitsch       PetscCall(PetscRandomCreate(PETSC_COMM_SELF, &r));
15889566063dSJacob Faibussowitsch       PetscCall(PetscRandomSetInterval(r, 0, 2467*size));
15899566063dSJacob Faibussowitsch       PetscCall(VecCreate(PETSC_COMM_SELF, &shifts));
15909566063dSJacob Faibussowitsch       PetscCall(VecSetSizes(shifts, numShifts, numShifts));
15919566063dSJacob Faibussowitsch       PetscCall(VecSetType(shifts, VECSTANDARD));
15929566063dSJacob Faibussowitsch       PetscCall(VecSetRandom(shifts, r));
15939566063dSJacob Faibussowitsch       PetscCall(PetscRandomDestroy(&r));
15949566063dSJacob Faibussowitsch       PetscCall(VecGetArrayRead(shifts, &shift));
159523193802SMatthew G. Knepley     }
159623193802SMatthew G. Knepley 
15979566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(nroots, &rootVote));
15989566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(nleaves, &leafVote));
159923193802SMatthew G. Knepley     /* Point ownership vote: Process with highest rank owns shared points */
1600f5bf2dbfSMichael Lange     for (p = 0; p < nleaves; ++p) {
160123193802SMatthew G. Knepley       if (shiftDebug) {
160263a3b9bcSJacob Faibussowitsch         PetscCall(PetscSynchronizedPrintf(PetscObjectComm((PetscObject) dm), "[%d] Point %" PetscInt_FMT " RemotePoint %" PetscInt_FMT " Shift %" PetscInt_FMT " MyRank %" PetscInt_FMT "\n", rank, leaves ? leaves[p] : p, roots[p].index, (PetscInt) PetscRealPart(shift[roots[p].index%numShifts]), (rank + (shift ? (PetscInt) PetscRealPart(shift[roots[p].index%numShifts]) : 0))%size));
160323193802SMatthew G. Knepley       }
1604f5bf2dbfSMichael Lange       /* Either put in a bid or we know we own it */
1605fc02256fSLawrence Mitchell       leafVote[p].vote  = (rank + (shift ? (PetscInt) PetscRealPart(shift[roots[p].index%numShifts]) : 0))%size;
1606fc02256fSLawrence Mitchell       leafVote[p].rank = rank;
1607fc02256fSLawrence Mitchell       leafVote[p].index = p;
1608f5bf2dbfSMichael Lange     }
1609f5bf2dbfSMichael Lange     for (p = 0; p < nroots; p++) {
16101627f6ccSMichael Lange       /* Root must not participate in the reduction, flag so that MAXLOC does not use */
1611fc02256fSLawrence Mitchell       rootVote[p].vote  = -3;
1612fc02256fSLawrence Mitchell       rootVote[p].rank  = -3;
1613fc02256fSLawrence Mitchell       rootVote[p].index = -3;
1614f5bf2dbfSMichael Lange     }
16159566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Type_contiguous(3, MPIU_INT, &datatype));
16169566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Type_commit(&datatype));
16179566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Op_create(&MaxLocCarry, 1, &op));
16189566063dSJacob Faibussowitsch     PetscCall(PetscSFReduceBegin(migrationSF, datatype, leafVote, rootVote, op));
16199566063dSJacob Faibussowitsch     PetscCall(PetscSFReduceEnd(migrationSF, datatype, leafVote, rootVote, op));
16209566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Op_free(&op));
16219566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Type_free(&datatype));
1622c091126eSLawrence Mitchell     for (p = 0; p < nroots; p++) {
1623fc02256fSLawrence Mitchell       rootNodes[p].rank = rootVote[p].rank;
1624fc02256fSLawrence Mitchell       rootNodes[p].index = rootVote[p].index;
1625c091126eSLawrence Mitchell     }
16269566063dSJacob Faibussowitsch     PetscCall(PetscFree(leafVote));
16279566063dSJacob Faibussowitsch     PetscCall(PetscFree(rootVote));
1628f5bf2dbfSMichael Lange   } else {
1629f5bf2dbfSMichael Lange     for (p = 0; p < nroots; p++) {
1630f5bf2dbfSMichael Lange       rootNodes[p].index = -1;
1631f5bf2dbfSMichael Lange       rootNodes[p].rank = rank;
1632fc02256fSLawrence Mitchell     }
1633f5bf2dbfSMichael Lange     for (p = 0; p < nleaves; p++) {
1634f5bf2dbfSMichael Lange       /* Write new local id into old location */
1635f5bf2dbfSMichael Lange       if (roots[p].rank == rank) {
16366462276dSToby Isaac         rootNodes[roots[p].index].index = leaves ? leaves[p] : p;
1637f5bf2dbfSMichael Lange       }
1638f5bf2dbfSMichael Lange     }
1639f5bf2dbfSMichael Lange   }
16409566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastBegin(migrationSF, MPIU_2INT, rootNodes, leafNodes,MPI_REPLACE));
16419566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastEnd(migrationSF, MPIU_2INT, rootNodes, leafNodes,MPI_REPLACE));
1642f5bf2dbfSMichael Lange 
164323193802SMatthew G. Knepley   for (npointLeaves = 0, p = 0; p < nleaves; p++) {
1644b0e1264bSMatthew G. Knepley     if (leafNodes[p].rank != rank) npointLeaves++;
164523193802SMatthew G. Knepley   }
16469566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(npointLeaves, &pointLocal));
16479566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(npointLeaves, &pointRemote));
1648f5bf2dbfSMichael Lange   for (idx = 0, p = 0; p < nleaves; p++) {
1649b0e1264bSMatthew G. Knepley     if (leafNodes[p].rank != rank) {
16503618482eSVaclav Hapla       /* Note that pointLocal is automatically sorted as it is sublist of 0, ..., nleaves-1 */
1651f5bf2dbfSMichael Lange       pointLocal[idx] = p;
1652f5bf2dbfSMichael Lange       pointRemote[idx] = leafNodes[p];
1653f5bf2dbfSMichael Lange       idx++;
1654f5bf2dbfSMichael Lange     }
1655f5bf2dbfSMichael Lange   }
165623193802SMatthew G. Knepley   if (shift) {
16579566063dSJacob Faibussowitsch     PetscCall(VecRestoreArrayRead(shifts, &shift));
16589566063dSJacob Faibussowitsch     PetscCall(VecDestroy(&shifts));
165923193802SMatthew G. Knepley   }
16609566063dSJacob Faibussowitsch   if (shiftDebug) PetscCall(PetscSynchronizedFlush(PetscObjectComm((PetscObject) dm), PETSC_STDOUT));
16619566063dSJacob Faibussowitsch   PetscCall(PetscSFCreate(PetscObjectComm((PetscObject) dm), pointSF));
16629566063dSJacob Faibussowitsch   PetscCall(PetscSFSetFromOptions(*pointSF));
16639566063dSJacob Faibussowitsch   PetscCall(PetscSFSetGraph(*pointSF, nleaves, npointLeaves, pointLocal, PETSC_OWN_POINTER, pointRemote, PETSC_OWN_POINTER));
16649566063dSJacob Faibussowitsch   PetscCall(PetscFree2(rootNodes, leafNodes));
16659566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(DMPLEX_CreatePointSF,dm,0,0,0));
16666c1ef331SVaclav Hapla   if (PetscDefined(USE_DEBUG)) PetscCall(DMPlexCheckPointSF(dm, *pointSF));
1667f5bf2dbfSMichael Lange   PetscFunctionReturn(0);
1668f5bf2dbfSMichael Lange }
1669f5bf2dbfSMichael Lange 
167015078cd4SMichael Lange /*@C
167115078cd4SMichael Lange   DMPlexMigrate  - Migrates internal DM data over the supplied star forest
167215078cd4SMichael Lange 
1673d083f849SBarry Smith   Collective on dm
167483655b49SVáclav Hapla 
1675064ec1f3Sprj-   Input Parameters:
167615078cd4SMichael Lange + dm       - The source DMPlex object
1677d8d19677SJose E. Roman - sf       - The star forest communication context describing the migration pattern
167815078cd4SMichael Lange 
167915078cd4SMichael Lange   Output Parameter:
1680d8d19677SJose E. Roman . targetDM - The target DMPlex object
168115078cd4SMichael Lange 
1682b9f40539SMichael Lange   Level: intermediate
168315078cd4SMichael Lange 
1684db781477SPatrick Sanan .seealso: `DMPlexDistribute()`, `DMPlexDistributeOverlap()`
168515078cd4SMichael Lange @*/
1686b9f40539SMichael Lange PetscErrorCode DMPlexMigrate(DM dm, PetscSF sf, DM targetDM)
168715078cd4SMichael Lange {
1688b9f40539SMichael Lange   MPI_Comm               comm;
1689cc1750acSStefano Zampini   PetscInt               dim, cdim, nroots;
1690b9f40539SMichael Lange   PetscSF                sfPoint;
169115078cd4SMichael Lange   ISLocalToGlobalMapping ltogMigration;
1692ac04eaf7SToby Isaac   ISLocalToGlobalMapping ltogOriginal = NULL;
169315078cd4SMichael Lange 
169415078cd4SMichael Lange   PetscFunctionBegin;
169515078cd4SMichael Lange   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
16969566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(DMPLEX_Migrate, dm, 0, 0, 0));
16979566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject) dm, &comm));
16989566063dSJacob Faibussowitsch   PetscCall(DMGetDimension(dm, &dim));
16999566063dSJacob Faibussowitsch   PetscCall(DMSetDimension(targetDM, dim));
17009566063dSJacob Faibussowitsch   PetscCall(DMGetCoordinateDim(dm, &cdim));
17019566063dSJacob Faibussowitsch   PetscCall(DMSetCoordinateDim(targetDM, cdim));
170215078cd4SMichael Lange 
1703bfb0467fSMichael Lange   /* Check for a one-to-all distribution pattern */
17049566063dSJacob Faibussowitsch   PetscCall(DMGetPointSF(dm, &sfPoint));
17059566063dSJacob Faibussowitsch   PetscCall(PetscSFGetGraph(sfPoint, &nroots, NULL, NULL, NULL));
1706bfb0467fSMichael Lange   if (nroots >= 0) {
1707b9f40539SMichael Lange     IS        isOriginal;
1708ac04eaf7SToby Isaac     PetscInt  n, size, nleaves;
1709ac04eaf7SToby Isaac     PetscInt  *numbering_orig, *numbering_new;
1710367003a6SStefano Zampini 
1711b9f40539SMichael Lange     /* Get the original point numbering */
17129566063dSJacob Faibussowitsch     PetscCall(DMPlexCreatePointNumbering(dm, &isOriginal));
17139566063dSJacob Faibussowitsch     PetscCall(ISLocalToGlobalMappingCreateIS(isOriginal, &ltogOriginal));
17149566063dSJacob Faibussowitsch     PetscCall(ISLocalToGlobalMappingGetSize(ltogOriginal, &size));
17159566063dSJacob Faibussowitsch     PetscCall(ISLocalToGlobalMappingGetBlockIndices(ltogOriginal, (const PetscInt**)&numbering_orig));
1716b9f40539SMichael Lange     /* Convert to positive global numbers */
1717b9f40539SMichael Lange     for (n=0; n<size; n++) {if (numbering_orig[n] < 0) numbering_orig[n] = -(numbering_orig[n]+1);}
1718b9f40539SMichael Lange     /* Derive the new local-to-global mapping from the old one */
17199566063dSJacob Faibussowitsch     PetscCall(PetscSFGetGraph(sf, NULL, &nleaves, NULL, NULL));
17209566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(nleaves, &numbering_new));
17219566063dSJacob Faibussowitsch     PetscCall(PetscSFBcastBegin(sf, MPIU_INT, numbering_orig, numbering_new,MPI_REPLACE));
17229566063dSJacob Faibussowitsch     PetscCall(PetscSFBcastEnd(sf, MPIU_INT, numbering_orig, numbering_new,MPI_REPLACE));
17239566063dSJacob Faibussowitsch     PetscCall(ISLocalToGlobalMappingCreate(comm, 1, nleaves, numbering_new, PETSC_OWN_POINTER, &ltogMigration));
17249566063dSJacob Faibussowitsch     PetscCall(ISLocalToGlobalMappingRestoreIndices(ltogOriginal, (const PetscInt**)&numbering_orig));
17259566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&isOriginal));
172615078cd4SMichael Lange   } else {
1727bfb0467fSMichael Lange     /* One-to-all distribution pattern: We can derive LToG from SF */
17289566063dSJacob Faibussowitsch     PetscCall(ISLocalToGlobalMappingCreateSF(sf, 0, &ltogMigration));
172915078cd4SMichael Lange   }
1730a5a902f7SVaclav Hapla   PetscCall(PetscObjectSetName((PetscObject)ltogMigration, "Point renumbering for DM migration"));
1731a5a902f7SVaclav Hapla   PetscCall(ISLocalToGlobalMappingViewFromOptions(ltogMigration, (PetscObject)dm, "-partition_view"));
173215078cd4SMichael Lange   /* Migrate DM data to target DM */
17339566063dSJacob Faibussowitsch   PetscCall(DMPlexDistributeCones(dm, sf, ltogOriginal, ltogMigration, targetDM));
17349566063dSJacob Faibussowitsch   PetscCall(DMPlexDistributeLabels(dm, sf, targetDM));
17359566063dSJacob Faibussowitsch   PetscCall(DMPlexDistributeCoordinates(dm, sf, targetDM));
17369566063dSJacob Faibussowitsch   PetscCall(DMPlexDistributeSetupTree(dm, sf, ltogOriginal, ltogMigration, targetDM));
17379566063dSJacob Faibussowitsch   PetscCall(ISLocalToGlobalMappingDestroy(&ltogOriginal));
17389566063dSJacob Faibussowitsch   PetscCall(ISLocalToGlobalMappingDestroy(&ltogMigration));
17399566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(DMPLEX_Migrate, dm, 0, 0, 0));
174015078cd4SMichael Lange   PetscFunctionReturn(0);
174115078cd4SMichael Lange }
174215078cd4SMichael Lange 
17433b8f15a2SMatthew G. Knepley /*@C
174470034214SMatthew G. Knepley   DMPlexDistribute - Distributes the mesh and any associated sections.
174570034214SMatthew G. Knepley 
1746d083f849SBarry Smith   Collective on dm
174770034214SMatthew G. Knepley 
1748064ec1f3Sprj-   Input Parameters:
174970034214SMatthew G. Knepley + dm  - The original DMPlex object
175070034214SMatthew G. Knepley - overlap - The overlap of partitions, 0 is the default
175170034214SMatthew G. Knepley 
1752064ec1f3Sprj-   Output Parameters:
1753f4ae5380SJed Brown + sf - The PetscSF used for point distribution, or NULL if not needed
1754f4ae5380SJed Brown - dmParallel - The distributed DMPlex object
175570034214SMatthew G. Knepley 
1756f4ae5380SJed Brown   Note: If the mesh was not distributed, the output dmParallel will be NULL.
175770034214SMatthew G. Knepley 
1758b0441da4SMatthew G. Knepley   The user can control the definition of adjacency for the mesh using DMSetAdjacency(). They should choose the combination appropriate for the function
175970034214SMatthew G. Knepley   representation on the mesh.
176070034214SMatthew G. Knepley 
176170034214SMatthew G. Knepley   Level: intermediate
176270034214SMatthew G. Knepley 
1763db781477SPatrick Sanan .seealso: `DMPlexCreate()`, `DMSetAdjacency()`, `DMPlexGetOverlap()`
176470034214SMatthew G. Knepley @*/
176580cf41d5SMatthew G. Knepley PetscErrorCode DMPlexDistribute(DM dm, PetscInt overlap, PetscSF *sf, DM *dmParallel)
176670034214SMatthew G. Knepley {
176770034214SMatthew G. Knepley   MPI_Comm               comm;
176815078cd4SMichael Lange   PetscPartitioner       partitioner;
1769f8987ae8SMichael Lange   IS                     cellPart;
1770f8987ae8SMichael Lange   PetscSection           cellPartSection;
1771cf86098cSMatthew G. Knepley   DM                     dmCoord;
1772f8987ae8SMichael Lange   DMLabel                lblPartition, lblMigration;
1773874ddda9SLisandro Dalcin   PetscSF                sfMigration, sfStratified, sfPoint;
177498ba2d7fSLawrence Mitchell   PetscBool              flg, balance;
1775874ddda9SLisandro Dalcin   PetscMPIInt            rank, size;
177670034214SMatthew G. Knepley 
177770034214SMatthew G. Knepley   PetscFunctionBegin;
177870034214SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
1779d5c515a1SMatthew G. Knepley   PetscValidLogicalCollectiveInt(dm, overlap, 2);
1780d5c515a1SMatthew G. Knepley   if (sf) PetscValidPointer(sf,3);
1781d5c515a1SMatthew G. Knepley   PetscValidPointer(dmParallel,4);
178270034214SMatthew G. Knepley 
17830c86c063SLisandro Dalcin   if (sf) *sf = NULL;
17840c86c063SLisandro Dalcin   *dmParallel = NULL;
17859566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)dm,&comm));
17869566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(comm, &rank));
17879566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
17880c86c063SLisandro Dalcin   if (size == 1) PetscFunctionReturn(0);
178970034214SMatthew G. Knepley 
17909566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(DMPLEX_Distribute,dm,0,0,0));
179115078cd4SMichael Lange   /* Create cell partition */
17929566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(DMPLEX_Partition,dm,0,0,0));
17939566063dSJacob Faibussowitsch   PetscCall(PetscSectionCreate(comm, &cellPartSection));
17949566063dSJacob Faibussowitsch   PetscCall(DMPlexGetPartitioner(dm, &partitioner));
17959566063dSJacob Faibussowitsch   PetscCall(PetscPartitionerDMPlexPartition(partitioner, dm, NULL, cellPartSection, &cellPart));
17969566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(DMPLEX_PartSelf,dm,0,0,0));
1797f8987ae8SMichael Lange   {
1798f8987ae8SMichael Lange     /* Convert partition to DMLabel */
1799825f8a23SLisandro Dalcin     IS             is;
1800825f8a23SLisandro Dalcin     PetscHSetI     ht;
1801f8987ae8SMichael Lange     const PetscInt *points;
18028e330a33SStefano Zampini     PetscInt       *iranks;
18038e330a33SStefano Zampini     PetscInt       pStart, pEnd, proc, npoints, poff = 0, nranks;
1804825f8a23SLisandro Dalcin 
18059566063dSJacob Faibussowitsch     PetscCall(DMLabelCreate(PETSC_COMM_SELF, "Point Partition", &lblPartition));
1806825f8a23SLisandro Dalcin     /* Preallocate strata */
18079566063dSJacob Faibussowitsch     PetscCall(PetscHSetICreate(&ht));
18089566063dSJacob Faibussowitsch     PetscCall(PetscSectionGetChart(cellPartSection, &pStart, &pEnd));
1809825f8a23SLisandro Dalcin     for (proc = pStart; proc < pEnd; proc++) {
18109566063dSJacob Faibussowitsch       PetscCall(PetscSectionGetDof(cellPartSection, proc, &npoints));
18119566063dSJacob Faibussowitsch       if (npoints) PetscCall(PetscHSetIAdd(ht, proc));
1812825f8a23SLisandro Dalcin     }
18139566063dSJacob Faibussowitsch     PetscCall(PetscHSetIGetSize(ht, &nranks));
18149566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(nranks, &iranks));
18159566063dSJacob Faibussowitsch     PetscCall(PetscHSetIGetElems(ht, &poff, iranks));
18169566063dSJacob Faibussowitsch     PetscCall(PetscHSetIDestroy(&ht));
18179566063dSJacob Faibussowitsch     PetscCall(DMLabelAddStrata(lblPartition, nranks, iranks));
18189566063dSJacob Faibussowitsch     PetscCall(PetscFree(iranks));
1819825f8a23SLisandro Dalcin     /* Inline DMPlexPartitionLabelClosure() */
18209566063dSJacob Faibussowitsch     PetscCall(ISGetIndices(cellPart, &points));
18219566063dSJacob Faibussowitsch     PetscCall(PetscSectionGetChart(cellPartSection, &pStart, &pEnd));
1822f8987ae8SMichael Lange     for (proc = pStart; proc < pEnd; proc++) {
18239566063dSJacob Faibussowitsch       PetscCall(PetscSectionGetDof(cellPartSection, proc, &npoints));
1824825f8a23SLisandro Dalcin       if (!npoints) continue;
18259566063dSJacob Faibussowitsch       PetscCall(PetscSectionGetOffset(cellPartSection, proc, &poff));
18269566063dSJacob Faibussowitsch       PetscCall(DMPlexClosurePoints_Private(dm, npoints, points+poff, &is));
18279566063dSJacob Faibussowitsch       PetscCall(DMLabelSetStratumIS(lblPartition, proc, is));
18289566063dSJacob Faibussowitsch       PetscCall(ISDestroy(&is));
1829f8987ae8SMichael Lange     }
18309566063dSJacob Faibussowitsch     PetscCall(ISRestoreIndices(cellPart, &points));
1831f8987ae8SMichael Lange   }
18329566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(DMPLEX_PartSelf,dm,0,0,0));
18336e203dd9SStefano Zampini 
18349566063dSJacob Faibussowitsch   PetscCall(DMLabelCreate(PETSC_COMM_SELF, "Point migration", &lblMigration));
18359566063dSJacob Faibussowitsch   PetscCall(DMPlexPartitionLabelInvert(dm, lblPartition, NULL, lblMigration));
18369566063dSJacob Faibussowitsch   PetscCall(DMPlexPartitionLabelCreateSF(dm, lblMigration, &sfMigration));
18379566063dSJacob Faibussowitsch   PetscCall(DMPlexStratifyMigrationSF(dm, sfMigration, &sfStratified));
18389566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&sfMigration));
183943f7d02bSMichael Lange   sfMigration = sfStratified;
18409566063dSJacob Faibussowitsch   PetscCall(PetscSFSetUp(sfMigration));
18419566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(DMPLEX_Partition,dm,0,0,0));
18429566063dSJacob Faibussowitsch   PetscCall(PetscOptionsHasName(((PetscObject) dm)->options,((PetscObject) dm)->prefix, "-partition_view", &flg));
184370034214SMatthew G. Knepley   if (flg) {
18449566063dSJacob Faibussowitsch     PetscCall(DMLabelView(lblPartition, PETSC_VIEWER_STDOUT_(comm)));
18459566063dSJacob Faibussowitsch     PetscCall(PetscSFView(sfMigration, PETSC_VIEWER_STDOUT_(comm)));
184670034214SMatthew G. Knepley   }
1847f8987ae8SMichael Lange 
184815078cd4SMichael Lange   /* Create non-overlapping parallel DM and migrate internal data */
18499566063dSJacob Faibussowitsch   PetscCall(DMPlexCreate(comm, dmParallel));
18509566063dSJacob Faibussowitsch   PetscCall(PetscObjectSetName((PetscObject) *dmParallel, "Parallel Mesh"));
18519566063dSJacob Faibussowitsch   PetscCall(DMPlexMigrate(dm, sfMigration, *dmParallel));
185270034214SMatthew G. Knepley 
1853a157612eSMichael Lange   /* Build the point SF without overlap */
18549566063dSJacob Faibussowitsch   PetscCall(DMPlexGetPartitionBalance(dm, &balance));
18559566063dSJacob Faibussowitsch   PetscCall(DMPlexSetPartitionBalance(*dmParallel, balance));
18569566063dSJacob Faibussowitsch   PetscCall(DMPlexCreatePointSF(*dmParallel, sfMigration, PETSC_TRUE, &sfPoint));
18579566063dSJacob Faibussowitsch   PetscCall(DMSetPointSF(*dmParallel, sfPoint));
18589566063dSJacob Faibussowitsch   PetscCall(DMGetCoordinateDM(*dmParallel, &dmCoord));
18599566063dSJacob Faibussowitsch   if (dmCoord) PetscCall(DMSetPointSF(dmCoord, sfPoint));
18609566063dSJacob Faibussowitsch   if (flg) PetscCall(PetscSFView(sfPoint, NULL));
186170034214SMatthew G. Knepley 
1862a157612eSMichael Lange   if (overlap > 0) {
186315078cd4SMichael Lange     DM                 dmOverlap;
186457f290daSMatthew G. Knepley     PetscInt           nroots, nleaves, noldleaves, l;
186557f290daSMatthew G. Knepley     const PetscInt    *oldLeaves;
186657f290daSMatthew G. Knepley     PetscSFNode       *newRemote, *permRemote;
186715078cd4SMichael Lange     const PetscSFNode *oldRemote;
186815078cd4SMichael Lange     PetscSF            sfOverlap, sfOverlapPoint;
1869524e35f8SStefano Zampini 
1870a157612eSMichael Lange     /* Add the partition overlap to the distributed DM */
18719566063dSJacob Faibussowitsch     PetscCall(DMPlexDistributeOverlap(*dmParallel, overlap, &sfOverlap, &dmOverlap));
18729566063dSJacob Faibussowitsch     PetscCall(DMDestroy(dmParallel));
1873a157612eSMichael Lange     *dmParallel = dmOverlap;
1874c389ea9fSToby Isaac     if (flg) {
18759566063dSJacob Faibussowitsch       PetscCall(PetscPrintf(comm, "Overlap Migration SF:\n"));
18769566063dSJacob Faibussowitsch       PetscCall(PetscSFView(sfOverlap, NULL));
1877c389ea9fSToby Isaac     }
187843331d4aSMichael Lange 
1879f8987ae8SMichael Lange     /* Re-map the migration SF to establish the full migration pattern */
18809566063dSJacob Faibussowitsch     PetscCall(PetscSFGetGraph(sfMigration, &nroots, &noldleaves, &oldLeaves, &oldRemote));
18819566063dSJacob Faibussowitsch     PetscCall(PetscSFGetGraph(sfOverlap, NULL, &nleaves, NULL, NULL));
18829566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(nleaves, &newRemote));
188357f290daSMatthew G. Knepley     /* oldRemote: original root point mapping to original leaf point
188457f290daSMatthew G. Knepley        newRemote: original leaf point mapping to overlapped leaf point */
188557f290daSMatthew G. Knepley     if (oldLeaves) {
188673e69a6aSMatthew G. Knepley       /* After stratification, the migration remotes may not be in root (canonical) order, so we reorder using the leaf numbering */
18879566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(noldleaves, &permRemote));
188857f290daSMatthew G. Knepley       for (l = 0; l < noldleaves; ++l) permRemote[oldLeaves[l]] = oldRemote[l];
188957f290daSMatthew G. Knepley       oldRemote = permRemote;
189057f290daSMatthew G. Knepley     }
18919566063dSJacob Faibussowitsch     PetscCall(PetscSFBcastBegin(sfOverlap, MPIU_2INT, oldRemote, newRemote,MPI_REPLACE));
18929566063dSJacob Faibussowitsch     PetscCall(PetscSFBcastEnd(sfOverlap, MPIU_2INT, oldRemote, newRemote,MPI_REPLACE));
18939566063dSJacob Faibussowitsch     if (oldLeaves) PetscCall(PetscFree(oldRemote));
18949566063dSJacob Faibussowitsch     PetscCall(PetscSFCreate(comm, &sfOverlapPoint));
18959566063dSJacob Faibussowitsch     PetscCall(PetscSFSetGraph(sfOverlapPoint, nroots, nleaves, NULL, PETSC_OWN_POINTER, newRemote, PETSC_OWN_POINTER));
18969566063dSJacob Faibussowitsch     PetscCall(PetscSFDestroy(&sfOverlap));
18979566063dSJacob Faibussowitsch     PetscCall(PetscSFDestroy(&sfMigration));
189815078cd4SMichael Lange     sfMigration = sfOverlapPoint;
1899c389ea9fSToby Isaac   }
1900bf5244c7SMatthew G. Knepley   /* Cleanup Partition */
19019566063dSJacob Faibussowitsch   PetscCall(DMLabelDestroy(&lblPartition));
19029566063dSJacob Faibussowitsch   PetscCall(DMLabelDestroy(&lblMigration));
19039566063dSJacob Faibussowitsch   PetscCall(PetscSectionDestroy(&cellPartSection));
19049566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&cellPart));
190545480ffeSMatthew G. Knepley   /* Copy discretization */
19069566063dSJacob Faibussowitsch   PetscCall(DMCopyDisc(dm, *dmParallel));
190766fe0bfeSMatthew G. Knepley   /* Create sfNatural */
190866fe0bfeSMatthew G. Knepley   if (dm->useNatural) {
190966fe0bfeSMatthew G. Knepley     PetscSection section;
191066fe0bfeSMatthew G. Knepley 
19119566063dSJacob Faibussowitsch     PetscCall(DMGetLocalSection(dm, &section));
19129566063dSJacob Faibussowitsch     PetscCall(DMPlexCreateGlobalToNaturalSF(*dmParallel, section, sfMigration, &(*dmParallel)->sfNatural));
19139566063dSJacob Faibussowitsch     PetscCall(DMSetUseNatural(*dmParallel, PETSC_TRUE));
191466fe0bfeSMatthew G. Knepley   }
19155de52c6dSVaclav Hapla   PetscCall(DMPlexCopy_Internal(dm, PETSC_TRUE, PETSC_FALSE, *dmParallel));
1916721cbd76SMatthew G. Knepley   /* Cleanup */
1917f8987ae8SMichael Lange   if (sf) {*sf = sfMigration;}
19189566063dSJacob Faibussowitsch   else    PetscCall(PetscSFDestroy(&sfMigration));
19199566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&sfPoint));
19209566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(DMPLEX_Distribute,dm,0,0,0));
192170034214SMatthew G. Knepley   PetscFunctionReturn(0);
192270034214SMatthew G. Knepley }
1923a157612eSMichael Lange 
1924a157612eSMichael Lange /*@C
192524cc2ca5SMatthew G. Knepley   DMPlexDistributeOverlap - Add partition overlap to a distributed non-overlapping DM.
1926a157612eSMichael Lange 
1927d083f849SBarry Smith   Collective on dm
1928a157612eSMichael Lange 
1929064ec1f3Sprj-   Input Parameters:
1930064ec1f3Sprj- + dm  - The non-overlapping distributed DMPlex object
193157fe9a49SVaclav Hapla - overlap - The overlap of partitions (the same on all ranks)
1932a157612eSMichael Lange 
1933064ec1f3Sprj-   Output Parameters:
1934a157612eSMichael Lange + sf - The PetscSF used for point distribution
1935a157612eSMichael Lange - dmOverlap - The overlapping distributed DMPlex object, or NULL
1936a157612eSMichael Lange 
1937dccdeccaSVaclav Hapla   Notes:
1938dccdeccaSVaclav Hapla   If the mesh was not distributed, the return value is NULL.
1939a157612eSMichael Lange 
1940b0441da4SMatthew G. Knepley   The user can control the definition of adjacency for the mesh using DMSetAdjacency(). They should choose the combination appropriate for the function
1941a157612eSMichael Lange   representation on the mesh.
1942a157612eSMichael Lange 
1943c506a872SMatthew G. Knepley   Options Database Keys:
1944c506a872SMatthew G. Knepley + -dm_plex_overlap_labels <name1,name2,...> - List of overlap label names
1945c506a872SMatthew G. Knepley . -dm_plex_overlap_values <int1,int2,...>   - List of overlap label values
1946c506a872SMatthew G. Knepley . -dm_plex_overlap_exclude_label <name>     - Label used to exclude points from overlap
1947c506a872SMatthew G. Knepley - -dm_plex_overlap_exclude_value <int>      - Label value used to exclude points from overlap
1948c506a872SMatthew G. Knepley 
1949dccdeccaSVaclav Hapla   Level: advanced
1950a157612eSMichael Lange 
1951db781477SPatrick Sanan .seealso: `DMPlexCreate()`, `DMSetAdjacency()`, `DMPlexDistribute()`, `DMPlexCreateOverlapLabel()`, `DMPlexGetOverlap()`
1952a157612eSMichael Lange @*/
1953b9f40539SMichael Lange PetscErrorCode DMPlexDistributeOverlap(DM dm, PetscInt overlap, PetscSF *sf, DM *dmOverlap)
1954a157612eSMichael Lange {
1955c506a872SMatthew G. Knepley   DM_Plex     *mesh = (DM_Plex *) dm->data;
1956a157612eSMichael Lange   MPI_Comm     comm;
19573567eaeeSMatthew G. Knepley   PetscMPIInt  size, rank;
1958a157612eSMichael Lange   PetscSection rootSection, leafSection;
1959a157612eSMichael Lange   IS           rootrank, leafrank;
1960cf86098cSMatthew G. Knepley   DM           dmCoord;
1961a9f1d5b2SMichael Lange   DMLabel      lblOverlap;
1962f5bf2dbfSMichael Lange   PetscSF      sfOverlap, sfStratified, sfPoint;
1963a157612eSMichael Lange 
1964a157612eSMichael Lange   PetscFunctionBegin;
1965a157612eSMichael Lange   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
196657fe9a49SVaclav Hapla   PetscValidLogicalCollectiveInt(dm, overlap, 2);
1967a157612eSMichael Lange   if (sf) PetscValidPointer(sf, 3);
1968a157612eSMichael Lange   PetscValidPointer(dmOverlap, 4);
1969a157612eSMichael Lange 
19700c86c063SLisandro Dalcin   if (sf) *sf = NULL;
19710c86c063SLisandro Dalcin   *dmOverlap  = NULL;
19729566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)dm,&comm));
19739566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
19749566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(comm, &rank));
19750c86c063SLisandro Dalcin   if (size == 1) PetscFunctionReturn(0);
1976c506a872SMatthew G. Knepley   {
1977c506a872SMatthew G. Knepley     // We need to get options for the _already_distributed mesh, so it must be done here
1978c506a872SMatthew G. Knepley     PetscInt    overlap;
1979c506a872SMatthew G. Knepley     const char *prefix;
1980c506a872SMatthew G. Knepley     char        oldPrefix[PETSC_MAX_PATH_LEN];
1981a157612eSMichael Lange 
1982c506a872SMatthew G. Knepley     oldPrefix[0] = '\0';
1983c506a872SMatthew G. Knepley     PetscCall(PetscObjectGetOptionsPrefix((PetscObject) dm, &prefix));
1984c506a872SMatthew G. Knepley     PetscCall(PetscStrcpy(oldPrefix, prefix));
1985c506a872SMatthew G. Knepley     PetscCall(PetscObjectAppendOptionsPrefix((PetscObject) dm, "dist_"));
1986c506a872SMatthew G. Knepley     PetscCall(DMPlexGetOverlap(dm, &overlap));
1987c506a872SMatthew G. Knepley     PetscObjectOptionsBegin((PetscObject) dm);
1988c506a872SMatthew G. Knepley     PetscCall(DMSetFromOptions_Overlap_Plex(PetscOptionsObject, dm, &overlap));
1989c506a872SMatthew G. Knepley     PetscOptionsEnd();
1990c506a872SMatthew G. Knepley     PetscCall(PetscObjectSetOptionsPrefix((PetscObject) dm, oldPrefix[0] == '\0' ? NULL : oldPrefix));
1991c506a872SMatthew G. Knepley   }
19929566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(DMPLEX_DistributeOverlap, dm, 0, 0, 0));
1993a157612eSMichael Lange   /* Compute point overlap with neighbouring processes on the distributed DM */
19949566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(DMPLEX_Partition,dm,0,0,0));
19959566063dSJacob Faibussowitsch   PetscCall(PetscSectionCreate(comm, &rootSection));
19969566063dSJacob Faibussowitsch   PetscCall(PetscSectionCreate(comm, &leafSection));
19979566063dSJacob Faibussowitsch   PetscCall(DMPlexDistributeOwnership(dm, rootSection, &rootrank, leafSection, &leafrank));
1998c506a872SMatthew G. Knepley   if (mesh->numOvLabels) PetscCall(DMPlexCreateOverlapLabelFromLabels(dm, mesh->numOvLabels, mesh->ovLabels, mesh->ovValues, mesh->numOvExLabels, mesh->ovExLabels, mesh->ovExValues, rootSection, rootrank, leafSection, leafrank, &lblOverlap));
1999c506a872SMatthew G. Knepley   else PetscCall(DMPlexCreateOverlapLabel(dm, overlap, rootSection, rootrank, leafSection, leafrank, &lblOverlap));
2000a9f1d5b2SMichael Lange   /* Convert overlap label to stratified migration SF */
20019566063dSJacob Faibussowitsch   PetscCall(DMPlexPartitionLabelCreateSF(dm, lblOverlap, &sfOverlap));
20029566063dSJacob Faibussowitsch   PetscCall(DMPlexStratifyMigrationSF(dm, sfOverlap, &sfStratified));
20039566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&sfOverlap));
2004a9f1d5b2SMichael Lange   sfOverlap = sfStratified;
20059566063dSJacob Faibussowitsch   PetscCall(PetscObjectSetName((PetscObject) sfOverlap, "Overlap SF"));
20069566063dSJacob Faibussowitsch   PetscCall(PetscSFSetFromOptions(sfOverlap));
2007a9f1d5b2SMichael Lange 
20089566063dSJacob Faibussowitsch   PetscCall(PetscSectionDestroy(&rootSection));
20099566063dSJacob Faibussowitsch   PetscCall(PetscSectionDestroy(&leafSection));
20109566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&rootrank));
20119566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&leafrank));
20129566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(DMPLEX_Partition,dm,0,0,0));
2013a157612eSMichael Lange 
2014a157612eSMichael Lange   /* Build the overlapping DM */
20159566063dSJacob Faibussowitsch   PetscCall(DMPlexCreate(comm, dmOverlap));
20169566063dSJacob Faibussowitsch   PetscCall(PetscObjectSetName((PetscObject) *dmOverlap, "Parallel Mesh"));
20179566063dSJacob Faibussowitsch   PetscCall(DMPlexMigrate(dm, sfOverlap, *dmOverlap));
2018cb54e036SVaclav Hapla   /* Store the overlap in the new DM */
201960667520SVaclav Hapla   PetscCall(DMPlexSetOverlap_Plex(*dmOverlap, dm, overlap));
2020f5bf2dbfSMichael Lange   /* Build the new point SF */
20219566063dSJacob Faibussowitsch   PetscCall(DMPlexCreatePointSF(*dmOverlap, sfOverlap, PETSC_FALSE, &sfPoint));
20229566063dSJacob Faibussowitsch   PetscCall(DMSetPointSF(*dmOverlap, sfPoint));
20239566063dSJacob Faibussowitsch   PetscCall(DMGetCoordinateDM(*dmOverlap, &dmCoord));
20249566063dSJacob Faibussowitsch   if (dmCoord) PetscCall(DMSetPointSF(dmCoord, sfPoint));
20256858538eSMatthew G. Knepley   PetscCall(DMGetCellCoordinateDM(*dmOverlap, &dmCoord));
20266858538eSMatthew G. Knepley   if (dmCoord) PetscCall(DMSetPointSF(dmCoord, sfPoint));
20279566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&sfPoint));
2028a157612eSMichael Lange   /* Cleanup overlap partition */
20299566063dSJacob Faibussowitsch   PetscCall(DMLabelDestroy(&lblOverlap));
2030a9f1d5b2SMichael Lange   if (sf) *sf = sfOverlap;
20319566063dSJacob Faibussowitsch   else    PetscCall(PetscSFDestroy(&sfOverlap));
20329566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(DMPLEX_DistributeOverlap, dm, 0, 0, 0));
2033a157612eSMichael Lange   PetscFunctionReturn(0);
2034a157612eSMichael Lange }
20356462276dSToby Isaac 
2036cb54e036SVaclav Hapla PetscErrorCode DMPlexGetOverlap_Plex(DM dm, PetscInt *overlap)
2037cb54e036SVaclav Hapla {
2038cb54e036SVaclav Hapla   DM_Plex        *mesh  = (DM_Plex*) dm->data;
2039cb54e036SVaclav Hapla 
2040cb54e036SVaclav Hapla   PetscFunctionBegin;
2041cb54e036SVaclav Hapla   *overlap = mesh->overlap;
2042cb54e036SVaclav Hapla   PetscFunctionReturn(0);
2043cb54e036SVaclav Hapla }
2044cb54e036SVaclav Hapla 
204560667520SVaclav Hapla PetscErrorCode DMPlexSetOverlap_Plex(DM dm, DM dmSrc, PetscInt overlap)
204660667520SVaclav Hapla {
204760667520SVaclav Hapla   DM_Plex        *mesh=NULL;
204860667520SVaclav Hapla   DM_Plex        *meshSrc=NULL;
204960667520SVaclav Hapla 
205060667520SVaclav Hapla   PetscFunctionBegin;
205160667520SVaclav Hapla   PetscValidHeaderSpecificType(dm, DM_CLASSID, 1, DMPLEX);
205260667520SVaclav Hapla   mesh = (DM_Plex*) dm->data;
205360667520SVaclav Hapla   mesh->overlap = overlap;
205460667520SVaclav Hapla   if (dmSrc) {
205560667520SVaclav Hapla     PetscValidHeaderSpecificType(dmSrc, DM_CLASSID, 2, DMPLEX);
205660667520SVaclav Hapla     meshSrc = (DM_Plex*) dmSrc->data;
205760667520SVaclav Hapla     mesh->overlap += meshSrc->overlap;
205860667520SVaclav Hapla   }
205960667520SVaclav Hapla   PetscFunctionReturn(0);
206060667520SVaclav Hapla }
206160667520SVaclav Hapla 
2062cb54e036SVaclav Hapla /*@
2063c506a872SMatthew G. Knepley   DMPlexGetOverlap - Get the width of the cell overlap
2064cb54e036SVaclav Hapla 
2065cb54e036SVaclav Hapla   Not collective
2066cb54e036SVaclav Hapla 
2067cb54e036SVaclav Hapla   Input Parameter:
2068cb54e036SVaclav Hapla . dm   - The DM
2069cb54e036SVaclav Hapla 
2070064ec1f3Sprj-   Output Parameter:
2071c506a872SMatthew G. Knepley . overlap - the width of the cell overlap
2072cb54e036SVaclav Hapla 
2073cb54e036SVaclav Hapla   Level: intermediate
2074cb54e036SVaclav Hapla 
2075c506a872SMatthew G. Knepley .seealso: `DMPlexSetOverlap()`, `DMPlexDistribute()`
2076cb54e036SVaclav Hapla @*/
2077cb54e036SVaclav Hapla PetscErrorCode DMPlexGetOverlap(DM dm, PetscInt *overlap)
2078cb54e036SVaclav Hapla {
2079cb54e036SVaclav Hapla   PetscFunctionBegin;
2080cb54e036SVaclav Hapla   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
2081c506a872SMatthew G. Knepley   PetscValidIntPointer(overlap, 2);
2082cac4c232SBarry Smith   PetscUseMethod(dm, "DMPlexGetOverlap_C",(DM,PetscInt*),(dm,overlap));
2083cb54e036SVaclav Hapla   PetscFunctionReturn(0);
2084cb54e036SVaclav Hapla }
2085cb54e036SVaclav Hapla 
2086c506a872SMatthew G. Knepley /*@
2087c506a872SMatthew G. Knepley   DMPlexSetOverlap - Set the width of the cell overlap
2088c506a872SMatthew G. Knepley 
2089c506a872SMatthew G. Knepley   Logically collective
2090c506a872SMatthew G. Knepley 
2091c506a872SMatthew G. Knepley   Input Parameters:
2092c506a872SMatthew G. Knepley + dm      - The DM
2093c506a872SMatthew G. Knepley . dmSrc   - The DM that produced this one, or NULL
2094c506a872SMatthew G. Knepley - overlap - the width of the cell overlap
2095c506a872SMatthew G. Knepley 
2096c506a872SMatthew G. Knepley   Note:
2097c506a872SMatthew G. Knepley   The overlap from dmSrc is added to dm
2098c506a872SMatthew G. Knepley 
2099c506a872SMatthew G. Knepley   Level: intermediate
2100c506a872SMatthew G. Knepley 
2101c506a872SMatthew G. Knepley .seealso: `DMPlexGetOverlap()`, `DMPlexDistribute()`
2102c506a872SMatthew G. Knepley @*/
2103c506a872SMatthew G. Knepley PetscErrorCode DMPlexSetOverlap(DM dm, DM dmSrc, PetscInt overlap)
2104c506a872SMatthew G. Knepley {
2105c506a872SMatthew G. Knepley   PetscFunctionBegin;
2106c506a872SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
2107c506a872SMatthew G. Knepley   PetscValidLogicalCollectiveInt(dm, overlap, 3);
2108c506a872SMatthew G. Knepley   PetscTryMethod(dm, "DMPlexSetOverlap_C",(DM,DM,PetscInt),(dm,dmSrc,overlap));
2109c506a872SMatthew G. Knepley   PetscFunctionReturn(0);
2110c506a872SMatthew G. Knepley }
2111c506a872SMatthew G. Knepley 
2112e600fa54SMatthew G. Knepley PetscErrorCode DMPlexDistributeSetDefault_Plex(DM dm, PetscBool dist)
2113e600fa54SMatthew G. Knepley {
2114e600fa54SMatthew G. Knepley   DM_Plex *mesh = (DM_Plex *) dm->data;
2115e600fa54SMatthew G. Knepley 
2116e600fa54SMatthew G. Knepley   PetscFunctionBegin;
2117e600fa54SMatthew G. Knepley   mesh->distDefault = dist;
2118e600fa54SMatthew G. Knepley   PetscFunctionReturn(0);
2119e600fa54SMatthew G. Knepley }
2120e600fa54SMatthew G. Knepley 
2121e600fa54SMatthew G. Knepley /*@
2122e600fa54SMatthew G. Knepley   DMPlexDistributeSetDefault - Set flag indicating whether the DM should be distributed by default
2123e600fa54SMatthew G. Knepley 
2124e600fa54SMatthew G. Knepley   Logically collective
2125e600fa54SMatthew G. Knepley 
2126e600fa54SMatthew G. Knepley   Input Parameters:
2127e600fa54SMatthew G. Knepley + dm   - The DM
2128e600fa54SMatthew G. Knepley - dist - Flag for distribution
2129e600fa54SMatthew G. Knepley 
2130e600fa54SMatthew G. Knepley   Level: intermediate
2131e600fa54SMatthew G. Knepley 
21329e70506fSSatish Balay .seealso: `DMPlexDistributeGetDefault()`, `DMPlexDistribute()`
2133e600fa54SMatthew G. Knepley @*/
2134e600fa54SMatthew G. Knepley PetscErrorCode DMPlexDistributeSetDefault(DM dm, PetscBool dist)
2135e600fa54SMatthew G. Knepley {
2136e600fa54SMatthew G. Knepley   PetscFunctionBegin;
2137e600fa54SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
2138e600fa54SMatthew G. Knepley   PetscValidLogicalCollectiveBool(dm, dist, 2);
2139cac4c232SBarry Smith   PetscTryMethod(dm,"DMPlexDistributeSetDefault_C",(DM,PetscBool),(dm,dist));
2140e600fa54SMatthew G. Knepley   PetscFunctionReturn(0);
2141e600fa54SMatthew G. Knepley }
2142e600fa54SMatthew G. Knepley 
2143e600fa54SMatthew G. Knepley PetscErrorCode DMPlexDistributeGetDefault_Plex(DM dm, PetscBool *dist)
2144e600fa54SMatthew G. Knepley {
2145e600fa54SMatthew G. Knepley   DM_Plex *mesh = (DM_Plex *) dm->data;
2146e600fa54SMatthew G. Knepley 
2147e600fa54SMatthew G. Knepley   PetscFunctionBegin;
2148e600fa54SMatthew G. Knepley   *dist = mesh->distDefault;
2149e600fa54SMatthew G. Knepley   PetscFunctionReturn(0);
2150e600fa54SMatthew G. Knepley }
2151e600fa54SMatthew G. Knepley 
2152e600fa54SMatthew G. Knepley /*@
2153e600fa54SMatthew G. Knepley   DMPlexDistributeGetDefault - Get flag indicating whether the DM should be distributed by default
2154e600fa54SMatthew G. Knepley 
2155e600fa54SMatthew G. Knepley   Not collective
2156e600fa54SMatthew G. Knepley 
2157e600fa54SMatthew G. Knepley   Input Parameter:
2158e600fa54SMatthew G. Knepley . dm   - The DM
2159e600fa54SMatthew G. Knepley 
2160e600fa54SMatthew G. Knepley   Output Parameter:
2161e600fa54SMatthew G. Knepley . dist - Flag for distribution
2162e600fa54SMatthew G. Knepley 
2163e600fa54SMatthew G. Knepley   Level: intermediate
2164e600fa54SMatthew G. Knepley 
21659e70506fSSatish Balay .seealso: `DMPlexDistributeSetDefault()`, `DMPlexDistribute()`
2166e600fa54SMatthew G. Knepley @*/
2167e600fa54SMatthew G. Knepley PetscErrorCode DMPlexDistributeGetDefault(DM dm, PetscBool *dist)
2168e600fa54SMatthew G. Knepley {
2169e600fa54SMatthew G. Knepley   PetscFunctionBegin;
2170e600fa54SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
2171e600fa54SMatthew G. Knepley   PetscValidBoolPointer(dist, 2);
2172cac4c232SBarry Smith   PetscUseMethod(dm,"DMPlexDistributeGetDefault_C",(DM,PetscBool*),(dm,dist));
2173e600fa54SMatthew G. Knepley   PetscFunctionReturn(0);
2174e600fa54SMatthew G. Knepley }
2175e600fa54SMatthew G. Knepley 
21766462276dSToby Isaac /*@C
21776462276dSToby Isaac   DMPlexGetGatherDM - Get a copy of the DMPlex that gathers all points on the
21786462276dSToby Isaac   root process of the original's communicator.
21796462276dSToby Isaac 
2180d083f849SBarry Smith   Collective on dm
218183655b49SVáclav Hapla 
2182064ec1f3Sprj-   Input Parameter:
21836462276dSToby Isaac . dm - the original DMPlex object
21846462276dSToby Isaac 
21856462276dSToby Isaac   Output Parameters:
2186a13df41bSStefano Zampini + sf - the PetscSF used for point distribution (optional)
2187a13df41bSStefano Zampini - gatherMesh - the gathered DM object, or NULL
21886462276dSToby Isaac 
21896462276dSToby Isaac   Level: intermediate
21906462276dSToby Isaac 
2191db781477SPatrick Sanan .seealso: `DMPlexDistribute()`, `DMPlexGetRedundantDM()`
21926462276dSToby Isaac @*/
2193a13df41bSStefano Zampini PetscErrorCode DMPlexGetGatherDM(DM dm, PetscSF *sf, DM *gatherMesh)
21946462276dSToby Isaac {
21956462276dSToby Isaac   MPI_Comm       comm;
21966462276dSToby Isaac   PetscMPIInt    size;
21976462276dSToby Isaac   PetscPartitioner oldPart, gatherPart;
21986462276dSToby Isaac 
21996462276dSToby Isaac   PetscFunctionBegin;
22006462276dSToby Isaac   PetscValidHeaderSpecific(dm,DM_CLASSID,1);
2201064a246eSJacob Faibussowitsch   PetscValidPointer(gatherMesh,3);
22020c86c063SLisandro Dalcin   *gatherMesh = NULL;
2203a13df41bSStefano Zampini   if (sf) *sf = NULL;
22046462276dSToby Isaac   comm = PetscObjectComm((PetscObject)dm);
22059566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm,&size));
22066462276dSToby Isaac   if (size == 1) PetscFunctionReturn(0);
22079566063dSJacob Faibussowitsch   PetscCall(DMPlexGetPartitioner(dm,&oldPart));
22089566063dSJacob Faibussowitsch   PetscCall(PetscObjectReference((PetscObject)oldPart));
22099566063dSJacob Faibussowitsch   PetscCall(PetscPartitionerCreate(comm,&gatherPart));
22109566063dSJacob Faibussowitsch   PetscCall(PetscPartitionerSetType(gatherPart,PETSCPARTITIONERGATHER));
22119566063dSJacob Faibussowitsch   PetscCall(DMPlexSetPartitioner(dm,gatherPart));
22129566063dSJacob Faibussowitsch   PetscCall(DMPlexDistribute(dm,0,sf,gatherMesh));
2213a13df41bSStefano Zampini 
22149566063dSJacob Faibussowitsch   PetscCall(DMPlexSetPartitioner(dm,oldPart));
22159566063dSJacob Faibussowitsch   PetscCall(PetscPartitionerDestroy(&gatherPart));
22169566063dSJacob Faibussowitsch   PetscCall(PetscPartitionerDestroy(&oldPart));
22176462276dSToby Isaac   PetscFunctionReturn(0);
22186462276dSToby Isaac }
22196462276dSToby Isaac 
22206462276dSToby Isaac /*@C
22216462276dSToby Isaac   DMPlexGetRedundantDM - Get a copy of the DMPlex that is completely copied on each process.
22226462276dSToby Isaac 
2223d083f849SBarry Smith   Collective on dm
222483655b49SVáclav Hapla 
2225064ec1f3Sprj-   Input Parameter:
22266462276dSToby Isaac . dm - the original DMPlex object
22276462276dSToby Isaac 
22286462276dSToby Isaac   Output Parameters:
2229a13df41bSStefano Zampini + sf - the PetscSF used for point distribution (optional)
2230a13df41bSStefano Zampini - redundantMesh - the redundant DM object, or NULL
22316462276dSToby Isaac 
22326462276dSToby Isaac   Level: intermediate
22336462276dSToby Isaac 
2234db781477SPatrick Sanan .seealso: `DMPlexDistribute()`, `DMPlexGetGatherDM()`
22356462276dSToby Isaac @*/
2236a13df41bSStefano Zampini PetscErrorCode DMPlexGetRedundantDM(DM dm, PetscSF *sf, DM *redundantMesh)
22376462276dSToby Isaac {
22386462276dSToby Isaac   MPI_Comm       comm;
22396462276dSToby Isaac   PetscMPIInt    size, rank;
22406462276dSToby Isaac   PetscInt       pStart, pEnd, p;
22416462276dSToby Isaac   PetscInt       numPoints = -1;
2242a13df41bSStefano Zampini   PetscSF        migrationSF, sfPoint, gatherSF;
22436462276dSToby Isaac   DM             gatherDM, dmCoord;
22446462276dSToby Isaac   PetscSFNode    *points;
22456462276dSToby Isaac 
22466462276dSToby Isaac   PetscFunctionBegin;
22476462276dSToby Isaac   PetscValidHeaderSpecific(dm,DM_CLASSID,1);
2248064a246eSJacob Faibussowitsch   PetscValidPointer(redundantMesh,3);
22490c86c063SLisandro Dalcin   *redundantMesh = NULL;
22506462276dSToby Isaac   comm = PetscObjectComm((PetscObject)dm);
22519566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm,&size));
225268dbc166SMatthew G. Knepley   if (size == 1) {
22539566063dSJacob Faibussowitsch     PetscCall(PetscObjectReference((PetscObject) dm));
225468dbc166SMatthew G. Knepley     *redundantMesh = dm;
2255a13df41bSStefano Zampini     if (sf) *sf = NULL;
225668dbc166SMatthew G. Knepley     PetscFunctionReturn(0);
225768dbc166SMatthew G. Knepley   }
22589566063dSJacob Faibussowitsch   PetscCall(DMPlexGetGatherDM(dm,&gatherSF,&gatherDM));
22596462276dSToby Isaac   if (!gatherDM) PetscFunctionReturn(0);
22609566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(comm,&rank));
22619566063dSJacob Faibussowitsch   PetscCall(DMPlexGetChart(gatherDM,&pStart,&pEnd));
22626462276dSToby Isaac   numPoints = pEnd - pStart;
22639566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Bcast(&numPoints,1,MPIU_INT,0,comm));
22649566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(numPoints,&points));
22659566063dSJacob Faibussowitsch   PetscCall(PetscSFCreate(comm,&migrationSF));
22666462276dSToby Isaac   for (p = 0; p < numPoints; p++) {
22676462276dSToby Isaac     points[p].index = p;
22686462276dSToby Isaac     points[p].rank  = 0;
22696462276dSToby Isaac   }
22709566063dSJacob Faibussowitsch   PetscCall(PetscSFSetGraph(migrationSF,pEnd-pStart,numPoints,NULL,PETSC_OWN_POINTER,points,PETSC_OWN_POINTER));
22719566063dSJacob Faibussowitsch   PetscCall(DMPlexCreate(comm, redundantMesh));
22729566063dSJacob Faibussowitsch   PetscCall(PetscObjectSetName((PetscObject) *redundantMesh, "Redundant Mesh"));
22739566063dSJacob Faibussowitsch   PetscCall(DMPlexMigrate(gatherDM, migrationSF, *redundantMesh));
22742e28cf0cSVaclav Hapla   /* This is to express that all point are in overlap */
22752e28cf0cSVaclav Hapla   PetscCall(DMPlexSetOverlap_Plex(*redundantMesh, NULL, PETSC_MAX_INT));
22769566063dSJacob Faibussowitsch   PetscCall(DMPlexCreatePointSF(*redundantMesh, migrationSF, PETSC_FALSE, &sfPoint));
22779566063dSJacob Faibussowitsch   PetscCall(DMSetPointSF(*redundantMesh, sfPoint));
22789566063dSJacob Faibussowitsch   PetscCall(DMGetCoordinateDM(*redundantMesh, &dmCoord));
22799566063dSJacob Faibussowitsch   if (dmCoord) PetscCall(DMSetPointSF(dmCoord, sfPoint));
22809566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&sfPoint));
2281a13df41bSStefano Zampini   if (sf) {
2282a13df41bSStefano Zampini     PetscSF tsf;
2283a13df41bSStefano Zampini 
22849566063dSJacob Faibussowitsch     PetscCall(PetscSFCompose(gatherSF,migrationSF,&tsf));
22859566063dSJacob Faibussowitsch     PetscCall(DMPlexStratifyMigrationSF(dm, tsf, sf));
22869566063dSJacob Faibussowitsch     PetscCall(PetscSFDestroy(&tsf));
2287a13df41bSStefano Zampini   }
22889566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&migrationSF));
22899566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&gatherSF));
22909566063dSJacob Faibussowitsch   PetscCall(DMDestroy(&gatherDM));
22919566063dSJacob Faibussowitsch   PetscCall(DMCopyDisc(dm, *redundantMesh));
22925de52c6dSVaclav Hapla   PetscCall(DMPlexCopy_Internal(dm, PETSC_TRUE, PETSC_FALSE, *redundantMesh));
22936462276dSToby Isaac   PetscFunctionReturn(0);
22946462276dSToby Isaac }
22955fa78c88SVaclav Hapla 
22965fa78c88SVaclav Hapla /*@
22975fa78c88SVaclav Hapla   DMPlexIsDistributed - Find out whether this DM is distributed, i.e. more than one rank owns some points.
22985fa78c88SVaclav Hapla 
22995fa78c88SVaclav Hapla   Collective
23005fa78c88SVaclav Hapla 
23015fa78c88SVaclav Hapla   Input Parameter:
23025fa78c88SVaclav Hapla . dm      - The DM object
23035fa78c88SVaclav Hapla 
23045fa78c88SVaclav Hapla   Output Parameter:
23055fa78c88SVaclav Hapla . distributed - Flag whether the DM is distributed
23065fa78c88SVaclav Hapla 
23075fa78c88SVaclav Hapla   Level: intermediate
23085fa78c88SVaclav Hapla 
23095fa78c88SVaclav Hapla   Notes:
23105fa78c88SVaclav Hapla   This currently finds out whether at least two ranks have any DAG points.
23115fa78c88SVaclav Hapla   This involves MPI_Allreduce() with one integer.
23125fa78c88SVaclav Hapla   The result is currently not stashed so every call to this routine involves this global communication.
23135fa78c88SVaclav Hapla 
2314db781477SPatrick Sanan .seealso: `DMPlexDistribute()`, `DMPlexGetOverlap()`, `DMPlexIsInterpolated()`
23155fa78c88SVaclav Hapla @*/
23165fa78c88SVaclav Hapla PetscErrorCode DMPlexIsDistributed(DM dm, PetscBool *distributed)
23175fa78c88SVaclav Hapla {
23185fa78c88SVaclav Hapla   PetscInt          pStart, pEnd, count;
23195fa78c88SVaclav Hapla   MPI_Comm          comm;
232035d70e31SStefano Zampini   PetscMPIInt       size;
23215fa78c88SVaclav Hapla 
23225fa78c88SVaclav Hapla   PetscFunctionBegin;
23235fa78c88SVaclav Hapla   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
2324dadcf809SJacob Faibussowitsch   PetscValidBoolPointer(distributed,2);
23259566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)dm,&comm));
23269566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm,&size));
232735d70e31SStefano Zampini   if (size == 1) { *distributed = PETSC_FALSE; PetscFunctionReturn(0); }
23289566063dSJacob Faibussowitsch   PetscCall(DMPlexGetChart(dm, &pStart, &pEnd));
232935d70e31SStefano Zampini   count = (pEnd - pStart) > 0 ? 1 : 0;
23309566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Allreduce(MPI_IN_PLACE, &count, 1, MPIU_INT, MPI_SUM, comm));
23315fa78c88SVaclav Hapla   *distributed = count > 1 ? PETSC_TRUE : PETSC_FALSE;
23325fa78c88SVaclav Hapla   PetscFunctionReturn(0);
23335fa78c88SVaclav Hapla }
2334