1af0996ceSBarry Smith #include <petsc/private/dmpleximpl.h> /*I "petscdmplex.h" I*/ 2c58f1c22SToby Isaac #include <petsc/private/dmlabelimpl.h> /*I "petscdmlabel.h" I*/ 370034214SMatthew G. Knepley 43c1f0c11SLawrence Mitchell /*@C 53c1f0c11SLawrence Mitchell DMPlexSetAdjacencyUser - Define adjacency in the mesh using a user-provided callback 63c1f0c11SLawrence Mitchell 73c1f0c11SLawrence Mitchell Input Parameters: 83c1f0c11SLawrence Mitchell + dm - The DM object 93c1f0c11SLawrence Mitchell . user - The user callback, may be NULL (to clear the callback) 103c1f0c11SLawrence Mitchell - ctx - context for callback evaluation, may be NULL 113c1f0c11SLawrence Mitchell 123c1f0c11SLawrence Mitchell Level: advanced 133c1f0c11SLawrence Mitchell 143c1f0c11SLawrence Mitchell Notes: 153c1f0c11SLawrence Mitchell The caller of DMPlexGetAdjacency may need to arrange that a large enough array is available for the adjacency. 163c1f0c11SLawrence Mitchell 173c1f0c11SLawrence Mitchell Any setting here overrides other configuration of DMPlex adjacency determination. 183c1f0c11SLawrence Mitchell 19db781477SPatrick Sanan .seealso: `DMSetAdjacency()`, `DMPlexDistribute()`, `DMPlexPreallocateOperator()`, `DMPlexGetAdjacency()`, `DMPlexGetAdjacencyUser()` 203c1f0c11SLawrence Mitchell @*/ 213c1f0c11SLawrence Mitchell PetscErrorCode DMPlexSetAdjacencyUser(DM dm,PetscErrorCode (*user)(DM,PetscInt,PetscInt*,PetscInt[],void*),void *ctx) 223c1f0c11SLawrence Mitchell { 233c1f0c11SLawrence Mitchell DM_Plex *mesh = (DM_Plex *)dm->data; 243c1f0c11SLawrence Mitchell 253c1f0c11SLawrence Mitchell PetscFunctionBegin; 263c1f0c11SLawrence Mitchell PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 273c1f0c11SLawrence Mitchell mesh->useradjacency = user; 283c1f0c11SLawrence Mitchell mesh->useradjacencyctx = ctx; 293c1f0c11SLawrence Mitchell PetscFunctionReturn(0); 303c1f0c11SLawrence Mitchell } 313c1f0c11SLawrence Mitchell 323c1f0c11SLawrence Mitchell /*@C 333c1f0c11SLawrence Mitchell DMPlexGetAdjacencyUser - get the user-defined adjacency callback 343c1f0c11SLawrence Mitchell 353c1f0c11SLawrence Mitchell Input Parameter: 363c1f0c11SLawrence Mitchell . dm - The DM object 373c1f0c11SLawrence Mitchell 383c1f0c11SLawrence Mitchell Output Parameters: 396b867d5aSJose E. Roman + user - The user callback 403c1f0c11SLawrence Mitchell - ctx - context for callback evaluation 413c1f0c11SLawrence Mitchell 423c1f0c11SLawrence Mitchell Level: advanced 433c1f0c11SLawrence Mitchell 44db781477SPatrick Sanan .seealso: `DMSetAdjacency()`, `DMPlexDistribute()`, `DMPlexPreallocateOperator()`, `DMPlexGetAdjacency()`, `DMPlexSetAdjacencyUser()` 453c1f0c11SLawrence Mitchell @*/ 463c1f0c11SLawrence Mitchell PetscErrorCode DMPlexGetAdjacencyUser(DM dm, PetscErrorCode (**user)(DM,PetscInt,PetscInt*,PetscInt[],void*), void **ctx) 473c1f0c11SLawrence Mitchell { 483c1f0c11SLawrence Mitchell DM_Plex *mesh = (DM_Plex *)dm->data; 493c1f0c11SLawrence Mitchell 503c1f0c11SLawrence Mitchell PetscFunctionBegin; 513c1f0c11SLawrence Mitchell PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 523c1f0c11SLawrence Mitchell if (user) *user = mesh->useradjacency; 533c1f0c11SLawrence Mitchell if (ctx) *ctx = mesh->useradjacencyctx; 543c1f0c11SLawrence Mitchell PetscFunctionReturn(0); 553c1f0c11SLawrence Mitchell } 563c1f0c11SLawrence Mitchell 5770034214SMatthew G. Knepley /*@ 58a17985deSToby Isaac DMPlexSetAdjacencyUseAnchors - Define adjacency in the mesh using the point-to-point constraints. 598b0b4c70SToby Isaac 608b0b4c70SToby Isaac Input Parameters: 618b0b4c70SToby Isaac + dm - The DM object 625b317d89SToby Isaac - useAnchors - Flag to use the constraints. If PETSC_TRUE, then constrained points are omitted from DMPlexGetAdjacency(), and their anchor points appear in their place. 638b0b4c70SToby Isaac 648b0b4c70SToby Isaac Level: intermediate 658b0b4c70SToby Isaac 66db781477SPatrick Sanan .seealso: `DMGetAdjacency()`, `DMSetAdjacency()`, `DMPlexDistribute()`, `DMPlexPreallocateOperator()`, `DMPlexSetAnchors()` 678b0b4c70SToby Isaac @*/ 685b317d89SToby Isaac PetscErrorCode DMPlexSetAdjacencyUseAnchors(DM dm, PetscBool useAnchors) 698b0b4c70SToby Isaac { 708b0b4c70SToby Isaac DM_Plex *mesh = (DM_Plex *) dm->data; 718b0b4c70SToby Isaac 728b0b4c70SToby Isaac PetscFunctionBegin; 738b0b4c70SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 745b317d89SToby Isaac mesh->useAnchors = useAnchors; 758b0b4c70SToby Isaac PetscFunctionReturn(0); 768b0b4c70SToby Isaac } 778b0b4c70SToby Isaac 788b0b4c70SToby Isaac /*@ 79a17985deSToby Isaac DMPlexGetAdjacencyUseAnchors - Query whether adjacency in the mesh uses the point-to-point constraints. 808b0b4c70SToby Isaac 818b0b4c70SToby Isaac Input Parameter: 828b0b4c70SToby Isaac . dm - The DM object 838b0b4c70SToby Isaac 848b0b4c70SToby Isaac Output Parameter: 855b317d89SToby Isaac . useAnchors - Flag to use the closure. If PETSC_TRUE, then constrained points are omitted from DMPlexGetAdjacency(), and their anchor points appear in their place. 868b0b4c70SToby Isaac 878b0b4c70SToby Isaac Level: intermediate 888b0b4c70SToby Isaac 89db781477SPatrick Sanan .seealso: `DMPlexSetAdjacencyUseAnchors()`, `DMSetAdjacency()`, `DMGetAdjacency()`, `DMPlexDistribute()`, `DMPlexPreallocateOperator()`, `DMPlexSetAnchors()` 908b0b4c70SToby Isaac @*/ 915b317d89SToby Isaac PetscErrorCode DMPlexGetAdjacencyUseAnchors(DM dm, PetscBool *useAnchors) 928b0b4c70SToby Isaac { 938b0b4c70SToby Isaac DM_Plex *mesh = (DM_Plex *) dm->data; 948b0b4c70SToby Isaac 958b0b4c70SToby Isaac PetscFunctionBegin; 968b0b4c70SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 97064a246eSJacob Faibussowitsch PetscValidBoolPointer(useAnchors, 2); 985b317d89SToby Isaac *useAnchors = mesh->useAnchors; 998b0b4c70SToby Isaac PetscFunctionReturn(0); 1008b0b4c70SToby Isaac } 1018b0b4c70SToby Isaac 10270034214SMatthew G. Knepley static PetscErrorCode DMPlexGetAdjacency_Cone_Internal(DM dm, PetscInt p, PetscInt *adjSize, PetscInt adj[]) 10370034214SMatthew G. Knepley { 10470034214SMatthew G. Knepley const PetscInt *cone = NULL; 10570034214SMatthew G. Knepley PetscInt numAdj = 0, maxAdjSize = *adjSize, coneSize, c; 10670034214SMatthew G. Knepley 10770034214SMatthew G. Knepley PetscFunctionBeginHot; 1089566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, p, &coneSize)); 1099566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(dm, p, &cone)); 1104b6b44bdSMatthew G. Knepley for (c = 0; c <= coneSize; ++c) { 1114b6b44bdSMatthew G. Knepley const PetscInt point = !c ? p : cone[c-1]; 11270034214SMatthew G. Knepley const PetscInt *support = NULL; 11370034214SMatthew G. Knepley PetscInt supportSize, s, q; 11470034214SMatthew G. Knepley 1159566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupportSize(dm, point, &supportSize)); 1169566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupport(dm, point, &support)); 11770034214SMatthew G. Knepley for (s = 0; s < supportSize; ++s) { 118527e7439SSatish Balay for (q = 0; q < numAdj || ((void)(adj[numAdj++] = support[s]),0); ++q) { 11970034214SMatthew G. Knepley if (support[s] == adj[q]) break; 12070034214SMatthew G. Knepley } 12163a3b9bcSJacob Faibussowitsch PetscCheck(numAdj <= maxAdjSize,PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid mesh exceeded adjacency allocation (%" PetscInt_FMT ")", maxAdjSize); 12270034214SMatthew G. Knepley } 12370034214SMatthew G. Knepley } 12470034214SMatthew G. Knepley *adjSize = numAdj; 12570034214SMatthew G. Knepley PetscFunctionReturn(0); 12670034214SMatthew G. Knepley } 12770034214SMatthew G. Knepley 12870034214SMatthew G. Knepley static PetscErrorCode DMPlexGetAdjacency_Support_Internal(DM dm, PetscInt p, PetscInt *adjSize, PetscInt adj[]) 12970034214SMatthew G. Knepley { 13070034214SMatthew G. Knepley const PetscInt *support = NULL; 13170034214SMatthew G. Knepley PetscInt numAdj = 0, maxAdjSize = *adjSize, supportSize, s; 13270034214SMatthew G. Knepley 13370034214SMatthew G. Knepley PetscFunctionBeginHot; 1349566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupportSize(dm, p, &supportSize)); 1359566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupport(dm, p, &support)); 1364b6b44bdSMatthew G. Knepley for (s = 0; s <= supportSize; ++s) { 1374b6b44bdSMatthew G. Knepley const PetscInt point = !s ? p : support[s-1]; 13870034214SMatthew G. Knepley const PetscInt *cone = NULL; 13970034214SMatthew G. Knepley PetscInt coneSize, c, q; 14070034214SMatthew G. Knepley 1419566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, point, &coneSize)); 1429566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(dm, point, &cone)); 14370034214SMatthew G. Knepley for (c = 0; c < coneSize; ++c) { 144527e7439SSatish Balay for (q = 0; q < numAdj || ((void)(adj[numAdj++] = cone[c]),0); ++q) { 14570034214SMatthew G. Knepley if (cone[c] == adj[q]) break; 14670034214SMatthew G. Knepley } 14763a3b9bcSJacob Faibussowitsch PetscCheck(numAdj <= maxAdjSize,PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid mesh exceeded adjacency allocation (%" PetscInt_FMT ")", maxAdjSize); 14870034214SMatthew G. Knepley } 14970034214SMatthew G. Knepley } 15070034214SMatthew G. Knepley *adjSize = numAdj; 15170034214SMatthew G. Knepley PetscFunctionReturn(0); 15270034214SMatthew G. Knepley } 15370034214SMatthew G. Knepley 15470034214SMatthew G. Knepley static PetscErrorCode DMPlexGetAdjacency_Transitive_Internal(DM dm, PetscInt p, PetscBool useClosure, PetscInt *adjSize, PetscInt adj[]) 15570034214SMatthew G. Knepley { 15670034214SMatthew G. Knepley PetscInt *star = NULL; 15770034214SMatthew G. Knepley PetscInt numAdj = 0, maxAdjSize = *adjSize, starSize, s; 15870034214SMatthew G. Knepley 15970034214SMatthew G. Knepley PetscFunctionBeginHot; 1609566063dSJacob Faibussowitsch PetscCall(DMPlexGetTransitiveClosure(dm, p, useClosure, &starSize, &star)); 16170034214SMatthew G. Knepley for (s = 0; s < starSize*2; s += 2) { 16270034214SMatthew G. Knepley const PetscInt *closure = NULL; 16370034214SMatthew G. Knepley PetscInt closureSize, c, q; 16470034214SMatthew G. Knepley 1659566063dSJacob Faibussowitsch PetscCall(DMPlexGetTransitiveClosure(dm, star[s], (PetscBool)!useClosure, &closureSize, (PetscInt**) &closure)); 16670034214SMatthew G. Knepley for (c = 0; c < closureSize*2; c += 2) { 167527e7439SSatish Balay for (q = 0; q < numAdj || ((void)(adj[numAdj++] = closure[c]),0); ++q) { 16870034214SMatthew G. Knepley if (closure[c] == adj[q]) break; 16970034214SMatthew G. Knepley } 17063a3b9bcSJacob Faibussowitsch PetscCheck(numAdj <= maxAdjSize,PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid mesh exceeded adjacency allocation (%" PetscInt_FMT ")", maxAdjSize); 17170034214SMatthew G. Knepley } 1729566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreTransitiveClosure(dm, star[s], (PetscBool)!useClosure, &closureSize, (PetscInt**) &closure)); 17370034214SMatthew G. Knepley } 1749566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreTransitiveClosure(dm, p, useClosure, &starSize, &star)); 17570034214SMatthew G. Knepley *adjSize = numAdj; 17670034214SMatthew G. Knepley PetscFunctionReturn(0); 17770034214SMatthew G. Knepley } 17870034214SMatthew G. Knepley 1795b317d89SToby Isaac PetscErrorCode DMPlexGetAdjacency_Internal(DM dm, PetscInt p, PetscBool useCone, PetscBool useTransitiveClosure, PetscBool useAnchors, PetscInt *adjSize, PetscInt *adj[]) 18070034214SMatthew G. Knepley { 18179bad331SMatthew G. Knepley static PetscInt asiz = 0; 1828b0b4c70SToby Isaac PetscInt maxAnchors = 1; 1838b0b4c70SToby Isaac PetscInt aStart = -1, aEnd = -1; 1848b0b4c70SToby Isaac PetscInt maxAdjSize; 1858b0b4c70SToby Isaac PetscSection aSec = NULL; 1868b0b4c70SToby Isaac IS aIS = NULL; 1878b0b4c70SToby Isaac const PetscInt *anchors; 1883c1f0c11SLawrence Mitchell DM_Plex *mesh = (DM_Plex *)dm->data; 18970034214SMatthew G. Knepley 19070034214SMatthew G. Knepley PetscFunctionBeginHot; 1915b317d89SToby Isaac if (useAnchors) { 1929566063dSJacob Faibussowitsch PetscCall(DMPlexGetAnchors(dm,&aSec,&aIS)); 1938b0b4c70SToby Isaac if (aSec) { 1949566063dSJacob Faibussowitsch PetscCall(PetscSectionGetMaxDof(aSec,&maxAnchors)); 19524c766afSToby Isaac maxAnchors = PetscMax(1,maxAnchors); 1969566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(aSec,&aStart,&aEnd)); 1979566063dSJacob Faibussowitsch PetscCall(ISGetIndices(aIS,&anchors)); 1988b0b4c70SToby Isaac } 1998b0b4c70SToby Isaac } 20079bad331SMatthew G. Knepley if (!*adj) { 20124c766afSToby Isaac PetscInt depth, coneSeries, supportSeries, maxC, maxS, pStart, pEnd; 20279bad331SMatthew G. Knepley 2039566063dSJacob Faibussowitsch PetscCall(DMPlexGetChart(dm, &pStart,&pEnd)); 2049566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepth(dm, &depth)); 205412e9a14SMatthew G. Knepley depth = PetscMax(depth, -depth); 2069566063dSJacob Faibussowitsch PetscCall(DMPlexGetMaxSizes(dm, &maxC, &maxS)); 20724c766afSToby Isaac coneSeries = (maxC > 1) ? ((PetscPowInt(maxC,depth+1)-1)/(maxC-1)) : depth+1; 20824c766afSToby Isaac supportSeries = (maxS > 1) ? ((PetscPowInt(maxS,depth+1)-1)/(maxS-1)) : depth+1; 20924c766afSToby Isaac asiz = PetscMax(PetscPowInt(maxS,depth)*coneSeries,PetscPowInt(maxC,depth)*supportSeries); 2108b0b4c70SToby Isaac asiz *= maxAnchors; 21124c766afSToby Isaac asiz = PetscMin(asiz,pEnd-pStart); 2129566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(asiz,adj)); 21379bad331SMatthew G. Knepley } 21479bad331SMatthew G. Knepley if (*adjSize < 0) *adjSize = asiz; 2158b0b4c70SToby Isaac maxAdjSize = *adjSize; 2163c1f0c11SLawrence Mitchell if (mesh->useradjacency) { 2179566063dSJacob Faibussowitsch PetscCall((*mesh->useradjacency)(dm, p, adjSize, *adj, mesh->useradjacencyctx)); 2183c1f0c11SLawrence Mitchell } else if (useTransitiveClosure) { 2199566063dSJacob Faibussowitsch PetscCall(DMPlexGetAdjacency_Transitive_Internal(dm, p, useCone, adjSize, *adj)); 22070034214SMatthew G. Knepley } else if (useCone) { 2219566063dSJacob Faibussowitsch PetscCall(DMPlexGetAdjacency_Cone_Internal(dm, p, adjSize, *adj)); 22270034214SMatthew G. Knepley } else { 2239566063dSJacob Faibussowitsch PetscCall(DMPlexGetAdjacency_Support_Internal(dm, p, adjSize, *adj)); 22470034214SMatthew G. Knepley } 2255b317d89SToby Isaac if (useAnchors && aSec) { 2268b0b4c70SToby Isaac PetscInt origSize = *adjSize; 2278b0b4c70SToby Isaac PetscInt numAdj = origSize; 2288b0b4c70SToby Isaac PetscInt i = 0, j; 2298b0b4c70SToby Isaac PetscInt *orig = *adj; 2308b0b4c70SToby Isaac 2318b0b4c70SToby Isaac while (i < origSize) { 2328b0b4c70SToby Isaac PetscInt p = orig[i]; 2338b0b4c70SToby Isaac PetscInt aDof = 0; 2348b0b4c70SToby Isaac 2358b0b4c70SToby Isaac if (p >= aStart && p < aEnd) { 2369566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(aSec,p,&aDof)); 2378b0b4c70SToby Isaac } 2388b0b4c70SToby Isaac if (aDof) { 2398b0b4c70SToby Isaac PetscInt aOff; 2408b0b4c70SToby Isaac PetscInt s, q; 2418b0b4c70SToby Isaac 2428b0b4c70SToby Isaac for (j = i + 1; j < numAdj; j++) { 2438b0b4c70SToby Isaac orig[j - 1] = orig[j]; 2448b0b4c70SToby Isaac } 2458b0b4c70SToby Isaac origSize--; 2468b0b4c70SToby Isaac numAdj--; 2479566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(aSec,p,&aOff)); 2488b0b4c70SToby Isaac for (s = 0; s < aDof; ++s) { 249527e7439SSatish Balay for (q = 0; q < numAdj || ((void)(orig[numAdj++] = anchors[aOff+s]),0); ++q) { 2508b0b4c70SToby Isaac if (anchors[aOff+s] == orig[q]) break; 2518b0b4c70SToby Isaac } 25263a3b9bcSJacob Faibussowitsch PetscCheck(numAdj <= maxAdjSize,PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid mesh exceeded adjacency allocation (%" PetscInt_FMT ")", maxAdjSize); 2538b0b4c70SToby Isaac } 2548b0b4c70SToby Isaac } 2558b0b4c70SToby Isaac else { 2568b0b4c70SToby Isaac i++; 2578b0b4c70SToby Isaac } 2588b0b4c70SToby Isaac } 2598b0b4c70SToby Isaac *adjSize = numAdj; 2609566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(aIS,&anchors)); 2618b0b4c70SToby Isaac } 26270034214SMatthew G. Knepley PetscFunctionReturn(0); 26370034214SMatthew G. Knepley } 26470034214SMatthew G. Knepley 26570034214SMatthew G. Knepley /*@ 26670034214SMatthew G. Knepley DMPlexGetAdjacency - Return all points adjacent to the given point 26770034214SMatthew G. Knepley 26870034214SMatthew G. Knepley Input Parameters: 26970034214SMatthew G. Knepley + dm - The DM object 2706b867d5aSJose E. Roman - p - The point 27170034214SMatthew G. Knepley 2726b867d5aSJose E. Roman Input/Output Parameters: 2736b867d5aSJose E. Roman + adjSize - The maximum size of adj if it is non-NULL, or PETSC_DETERMINE; 2746b867d5aSJose E. Roman on output the number of adjacent points 2756b867d5aSJose E. Roman - adj - Either NULL so that the array is allocated, or an existing array with size adjSize; 2766b867d5aSJose E. Roman on output contains the adjacent points 27770034214SMatthew G. Knepley 27870034214SMatthew G. Knepley Level: advanced 27970034214SMatthew G. Knepley 28095452b02SPatrick Sanan Notes: 28195452b02SPatrick Sanan The user must PetscFree the adj array if it was not passed in. 28270034214SMatthew G. Knepley 283db781477SPatrick Sanan .seealso: `DMSetAdjacency()`, `DMPlexDistribute()`, `DMCreateMatrix()`, `DMPlexPreallocateOperator()` 28470034214SMatthew G. Knepley @*/ 28570034214SMatthew G. Knepley PetscErrorCode DMPlexGetAdjacency(DM dm, PetscInt p, PetscInt *adjSize, PetscInt *adj[]) 28670034214SMatthew G. Knepley { 2871cf84007SMatthew G. Knepley PetscBool useCone, useClosure, useAnchors; 28870034214SMatthew G. Knepley 28970034214SMatthew G. Knepley PetscFunctionBeginHot; 29070034214SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 291dadcf809SJacob Faibussowitsch PetscValidIntPointer(adjSize,3); 29270034214SMatthew G. Knepley PetscValidPointer(adj,4); 2939566063dSJacob Faibussowitsch PetscCall(DMGetBasicAdjacency(dm, &useCone, &useClosure)); 2949566063dSJacob Faibussowitsch PetscCall(DMPlexGetAdjacencyUseAnchors(dm, &useAnchors)); 2959566063dSJacob Faibussowitsch PetscCall(DMPlexGetAdjacency_Internal(dm, p, useCone, useClosure, useAnchors, adjSize, adj)); 29670034214SMatthew G. Knepley PetscFunctionReturn(0); 29770034214SMatthew G. Knepley } 29808633170SToby Isaac 299b0a623aaSMatthew G. Knepley /*@ 300b0a623aaSMatthew G. Knepley DMPlexCreateTwoSidedProcessSF - Create an SF which just has process connectivity 301b0a623aaSMatthew G. Knepley 302d083f849SBarry Smith Collective on dm 303b0a623aaSMatthew G. Knepley 304b0a623aaSMatthew G. Knepley Input Parameters: 305b0a623aaSMatthew G. Knepley + dm - The DM 3066b867d5aSJose E. Roman . sfPoint - The PetscSF which encodes point connectivity 3076b867d5aSJose E. Roman . rootRankSection - 3086b867d5aSJose E. Roman . rootRanks - 3096b867d5aSJose E. Roman . leftRankSection - 3106b867d5aSJose E. Roman - leafRanks - 311b0a623aaSMatthew G. Knepley 312b0a623aaSMatthew G. Knepley Output Parameters: 313b0a623aaSMatthew G. Knepley + processRanks - A list of process neighbors, or NULL 314b0a623aaSMatthew G. Knepley - sfProcess - An SF encoding the two-sided process connectivity, or NULL 315b0a623aaSMatthew G. Knepley 316b0a623aaSMatthew G. Knepley Level: developer 317b0a623aaSMatthew G. Knepley 318db781477SPatrick Sanan .seealso: `PetscSFCreate()`, `DMPlexCreateProcessSF()` 319b0a623aaSMatthew G. Knepley @*/ 320b0a623aaSMatthew G. Knepley PetscErrorCode DMPlexCreateTwoSidedProcessSF(DM dm, PetscSF sfPoint, PetscSection rootRankSection, IS rootRanks, PetscSection leafRankSection, IS leafRanks, IS *processRanks, PetscSF *sfProcess) 321b0a623aaSMatthew G. Knepley { 322b0a623aaSMatthew G. Knepley const PetscSFNode *remotePoints; 323b0a623aaSMatthew G. Knepley PetscInt *localPointsNew; 324b0a623aaSMatthew G. Knepley PetscSFNode *remotePointsNew; 325b0a623aaSMatthew G. Knepley const PetscInt *nranks; 326b0a623aaSMatthew G. Knepley PetscInt *ranksNew; 327b0a623aaSMatthew G. Knepley PetscBT neighbors; 328b0a623aaSMatthew G. Knepley PetscInt pStart, pEnd, p, numLeaves, l, numNeighbors, n; 3299852e123SBarry Smith PetscMPIInt size, proc, rank; 330b0a623aaSMatthew G. Knepley 331b0a623aaSMatthew G. Knepley PetscFunctionBegin; 332b0a623aaSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 333b0a623aaSMatthew G. Knepley PetscValidHeaderSpecific(sfPoint, PETSCSF_CLASSID, 2); 334064a246eSJacob Faibussowitsch if (processRanks) {PetscValidPointer(processRanks, 7);} 335064a246eSJacob Faibussowitsch if (sfProcess) {PetscValidPointer(sfProcess, 8);} 3369566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject) dm), &size)); 3379566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject) dm), &rank)); 3389566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(sfPoint, NULL, &numLeaves, NULL, &remotePoints)); 3399566063dSJacob Faibussowitsch PetscCall(PetscBTCreate(size, &neighbors)); 3409566063dSJacob Faibussowitsch PetscCall(PetscBTMemzero(size, neighbors)); 341b0a623aaSMatthew G. Knepley /* Compute root-to-leaf process connectivity */ 3429566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(rootRankSection, &pStart, &pEnd)); 3439566063dSJacob Faibussowitsch PetscCall(ISGetIndices(rootRanks, &nranks)); 344b0a623aaSMatthew G. Knepley for (p = pStart; p < pEnd; ++p) { 345b0a623aaSMatthew G. Knepley PetscInt ndof, noff, n; 346b0a623aaSMatthew G. Knepley 3479566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(rootRankSection, p, &ndof)); 3489566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(rootRankSection, p, &noff)); 3499566063dSJacob Faibussowitsch for (n = 0; n < ndof; ++n) PetscCall(PetscBTSet(neighbors, nranks[noff+n])); 350b0a623aaSMatthew G. Knepley } 3519566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(rootRanks, &nranks)); 352b0a623aaSMatthew G. Knepley /* Compute leaf-to-neighbor process connectivity */ 3539566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(leafRankSection, &pStart, &pEnd)); 3549566063dSJacob Faibussowitsch PetscCall(ISGetIndices(leafRanks, &nranks)); 355b0a623aaSMatthew G. Knepley for (p = pStart; p < pEnd; ++p) { 356b0a623aaSMatthew G. Knepley PetscInt ndof, noff, n; 357b0a623aaSMatthew G. Knepley 3589566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(leafRankSection, p, &ndof)); 3599566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(leafRankSection, p, &noff)); 3609566063dSJacob Faibussowitsch for (n = 0; n < ndof; ++n) PetscCall(PetscBTSet(neighbors, nranks[noff+n])); 361b0a623aaSMatthew G. Knepley } 3629566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(leafRanks, &nranks)); 363b0a623aaSMatthew G. Knepley /* Compute leaf-to-root process connectivity */ 364b0a623aaSMatthew G. Knepley for (l = 0; l < numLeaves; ++l) {PetscBTSet(neighbors, remotePoints[l].rank);} 365b0a623aaSMatthew G. Knepley /* Calculate edges */ 366b0a623aaSMatthew G. Knepley PetscBTClear(neighbors, rank); 3679852e123SBarry Smith for (proc = 0, numNeighbors = 0; proc < size; ++proc) {if (PetscBTLookup(neighbors, proc)) ++numNeighbors;} 3689566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(numNeighbors, &ranksNew)); 3699566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(numNeighbors, &localPointsNew)); 3709566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(numNeighbors, &remotePointsNew)); 3719852e123SBarry Smith for (proc = 0, n = 0; proc < size; ++proc) { 372b0a623aaSMatthew G. Knepley if (PetscBTLookup(neighbors, proc)) { 373b0a623aaSMatthew G. Knepley ranksNew[n] = proc; 374b0a623aaSMatthew G. Knepley localPointsNew[n] = proc; 375b0a623aaSMatthew G. Knepley remotePointsNew[n].index = rank; 376b0a623aaSMatthew G. Knepley remotePointsNew[n].rank = proc; 377b0a623aaSMatthew G. Knepley ++n; 378b0a623aaSMatthew G. Knepley } 379b0a623aaSMatthew G. Knepley } 3809566063dSJacob Faibussowitsch PetscCall(PetscBTDestroy(&neighbors)); 3819566063dSJacob Faibussowitsch if (processRanks) PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)dm), numNeighbors, ranksNew, PETSC_OWN_POINTER, processRanks)); 3829566063dSJacob Faibussowitsch else PetscCall(PetscFree(ranksNew)); 383b0a623aaSMatthew G. Knepley if (sfProcess) { 3849566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)dm), sfProcess)); 3859566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject) *sfProcess, "Two-Sided Process SF")); 3869566063dSJacob Faibussowitsch PetscCall(PetscSFSetFromOptions(*sfProcess)); 3879566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(*sfProcess, size, numNeighbors, localPointsNew, PETSC_OWN_POINTER, remotePointsNew, PETSC_OWN_POINTER)); 388b0a623aaSMatthew G. Knepley } 389b0a623aaSMatthew G. Knepley PetscFunctionReturn(0); 390b0a623aaSMatthew G. Knepley } 391b0a623aaSMatthew G. Knepley 392b0a623aaSMatthew G. Knepley /*@ 393b0a623aaSMatthew G. Knepley DMPlexDistributeOwnership - Compute owner information for shared points. This basically gets two-sided for an SF. 394b0a623aaSMatthew G. Knepley 395d083f849SBarry Smith Collective on dm 396b0a623aaSMatthew G. Knepley 397b0a623aaSMatthew G. Knepley Input Parameter: 398b0a623aaSMatthew G. Knepley . dm - The DM 399b0a623aaSMatthew G. Knepley 400b0a623aaSMatthew G. Knepley Output Parameters: 401b0a623aaSMatthew G. Knepley + rootSection - The number of leaves for a given root point 402b0a623aaSMatthew G. Knepley . rootrank - The rank of each edge into the root point 403b0a623aaSMatthew G. Knepley . leafSection - The number of processes sharing a given leaf point 404b0a623aaSMatthew G. Knepley - leafrank - The rank of each process sharing a leaf point 405b0a623aaSMatthew G. Knepley 406b0a623aaSMatthew G. Knepley Level: developer 407b0a623aaSMatthew G. Knepley 408db781477SPatrick Sanan .seealso: `DMPlexCreateOverlapLabel()`, `DMPlexDistribute()`, `DMPlexDistributeOverlap()` 409b0a623aaSMatthew G. Knepley @*/ 410b0a623aaSMatthew G. Knepley PetscErrorCode DMPlexDistributeOwnership(DM dm, PetscSection rootSection, IS *rootrank, PetscSection leafSection, IS *leafrank) 411b0a623aaSMatthew G. Knepley { 412b0a623aaSMatthew G. Knepley MPI_Comm comm; 413b0a623aaSMatthew G. Knepley PetscSF sfPoint; 414b0a623aaSMatthew G. Knepley const PetscInt *rootdegree; 415b0a623aaSMatthew G. Knepley PetscInt *myrank, *remoterank; 416b0a623aaSMatthew G. Knepley PetscInt pStart, pEnd, p, nedges; 417b0a623aaSMatthew G. Knepley PetscMPIInt rank; 418b0a623aaSMatthew G. Knepley 419b0a623aaSMatthew G. Knepley PetscFunctionBegin; 4209566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject) dm, &comm)); 4219566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 4229566063dSJacob Faibussowitsch PetscCall(DMPlexGetChart(dm, &pStart, &pEnd)); 4239566063dSJacob Faibussowitsch PetscCall(DMGetPointSF(dm, &sfPoint)); 424b0a623aaSMatthew G. Knepley /* Compute number of leaves for each root */ 4259566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject) rootSection, "Root Section")); 4269566063dSJacob Faibussowitsch PetscCall(PetscSectionSetChart(rootSection, pStart, pEnd)); 4279566063dSJacob Faibussowitsch PetscCall(PetscSFComputeDegreeBegin(sfPoint, &rootdegree)); 4289566063dSJacob Faibussowitsch PetscCall(PetscSFComputeDegreeEnd(sfPoint, &rootdegree)); 4299566063dSJacob Faibussowitsch for (p = pStart; p < pEnd; ++p) PetscCall(PetscSectionSetDof(rootSection, p, rootdegree[p-pStart])); 4309566063dSJacob Faibussowitsch PetscCall(PetscSectionSetUp(rootSection)); 431b0a623aaSMatthew G. Knepley /* Gather rank of each leaf to root */ 4329566063dSJacob Faibussowitsch PetscCall(PetscSectionGetStorageSize(rootSection, &nedges)); 4339566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(pEnd-pStart, &myrank)); 4349566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nedges, &remoterank)); 435b0a623aaSMatthew G. Knepley for (p = 0; p < pEnd-pStart; ++p) myrank[p] = rank; 4369566063dSJacob Faibussowitsch PetscCall(PetscSFGatherBegin(sfPoint, MPIU_INT, myrank, remoterank)); 4379566063dSJacob Faibussowitsch PetscCall(PetscSFGatherEnd(sfPoint, MPIU_INT, myrank, remoterank)); 4389566063dSJacob Faibussowitsch PetscCall(PetscFree(myrank)); 4399566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(comm, nedges, remoterank, PETSC_OWN_POINTER, rootrank)); 440b0a623aaSMatthew G. Knepley /* Distribute remote ranks to leaves */ 4419566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject) leafSection, "Leaf Section")); 4429566063dSJacob Faibussowitsch PetscCall(DMPlexDistributeFieldIS(dm, sfPoint, rootSection, *rootrank, leafSection, leafrank)); 443b0a623aaSMatthew G. Knepley PetscFunctionReturn(0); 444b0a623aaSMatthew G. Knepley } 445b0a623aaSMatthew G. Knepley 446278397a0SMatthew G. Knepley /*@C 447dccdeccaSVaclav Hapla DMPlexCreateOverlapLabel - Compute owner information for shared points. This basically gets two-sided for an SF. 448b0a623aaSMatthew G. Knepley 449d083f849SBarry Smith Collective on dm 450b0a623aaSMatthew G. Knepley 451b0a623aaSMatthew G. Knepley Input Parameters: 452b0a623aaSMatthew G. Knepley + dm - The DM 45324d039d7SMichael Lange . levels - Number of overlap levels 454b0a623aaSMatthew G. Knepley . rootSection - The number of leaves for a given root point 455b0a623aaSMatthew G. Knepley . rootrank - The rank of each edge into the root point 456b0a623aaSMatthew G. Knepley . leafSection - The number of processes sharing a given leaf point 457b0a623aaSMatthew G. Knepley - leafrank - The rank of each process sharing a leaf point 458b0a623aaSMatthew G. Knepley 459064ec1f3Sprj- Output Parameter: 460b4ec6ac8SBarry Smith . ovLabel - DMLabel containing remote overlap contributions as point/rank pairings 461b0a623aaSMatthew G. Knepley 462b0a623aaSMatthew G. Knepley Level: developer 463b0a623aaSMatthew G. Knepley 464db781477SPatrick Sanan .seealso: `DMPlexDistributeOwnership()`, `DMPlexDistribute()` 465b0a623aaSMatthew G. Knepley @*/ 466dccdeccaSVaclav Hapla PetscErrorCode DMPlexCreateOverlapLabel(DM dm, PetscInt levels, PetscSection rootSection, IS rootrank, PetscSection leafSection, IS leafrank, DMLabel *ovLabel) 467b0a623aaSMatthew G. Knepley { 468e540f424SMichael Lange MPI_Comm comm; 469b0a623aaSMatthew G. Knepley DMLabel ovAdjByRank; /* A DMLabel containing all points adjacent to shared points, separated by rank (value in label) */ 470874ddda9SLisandro Dalcin PetscSF sfPoint; 471b0a623aaSMatthew G. Knepley const PetscSFNode *remote; 472b0a623aaSMatthew G. Knepley const PetscInt *local; 4731fd9873aSMichael Lange const PetscInt *nrank, *rrank; 474b0a623aaSMatthew G. Knepley PetscInt *adj = NULL; 4751fd9873aSMichael Lange PetscInt pStart, pEnd, p, sStart, sEnd, nleaves, l; 4769852e123SBarry Smith PetscMPIInt rank, size; 47731bc6364SLisandro Dalcin PetscBool flg; 478b0a623aaSMatthew G. Knepley 479b0a623aaSMatthew G. Knepley PetscFunctionBegin; 4806ba1a4c7SVaclav Hapla *ovLabel = NULL; 4819566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject) dm, &comm)); 4829566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 4839566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 4846ba1a4c7SVaclav Hapla if (size == 1) PetscFunctionReturn(0); 4859566063dSJacob Faibussowitsch PetscCall(DMGetPointSF(dm, &sfPoint)); 4869566063dSJacob Faibussowitsch PetscCall(DMPlexGetChart(dm, &pStart, &pEnd)); 487d1674c6dSMatthew Knepley if (!levels) { 488d1674c6dSMatthew Knepley /* Add owned points */ 4899566063dSJacob Faibussowitsch PetscCall(DMLabelCreate(PETSC_COMM_SELF, "Overlap label", ovLabel)); 4909566063dSJacob Faibussowitsch for (p = pStart; p < pEnd; ++p) PetscCall(DMLabelSetValue(*ovLabel, p, rank)); 491d1674c6dSMatthew Knepley PetscFunctionReturn(0); 492d1674c6dSMatthew Knepley } 4939566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(leafSection, &sStart, &sEnd)); 4949566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(sfPoint, NULL, &nleaves, &local, &remote)); 4959566063dSJacob Faibussowitsch PetscCall(DMLabelCreate(PETSC_COMM_SELF, "Overlap adjacency", &ovAdjByRank)); 496b0a623aaSMatthew G. Knepley /* Handle leaves: shared with the root point */ 497b0a623aaSMatthew G. Knepley for (l = 0; l < nleaves; ++l) { 498b0a623aaSMatthew G. Knepley PetscInt adjSize = PETSC_DETERMINE, a; 499b0a623aaSMatthew G. Knepley 5009566063dSJacob Faibussowitsch PetscCall(DMPlexGetAdjacency(dm, local ? local[l] : l, &adjSize, &adj)); 5019566063dSJacob Faibussowitsch for (a = 0; a < adjSize; ++a) PetscCall(DMLabelSetValue(ovAdjByRank, adj[a], remote[l].rank)); 502b0a623aaSMatthew G. Knepley } 5039566063dSJacob Faibussowitsch PetscCall(ISGetIndices(rootrank, &rrank)); 5049566063dSJacob Faibussowitsch PetscCall(ISGetIndices(leafrank, &nrank)); 505b0a623aaSMatthew G. Knepley /* Handle roots */ 506b0a623aaSMatthew G. Knepley for (p = pStart; p < pEnd; ++p) { 507b0a623aaSMatthew G. Knepley PetscInt adjSize = PETSC_DETERMINE, neighbors = 0, noff, n, a; 508b0a623aaSMatthew G. Knepley 509b0a623aaSMatthew G. Knepley if ((p >= sStart) && (p < sEnd)) { 510b0a623aaSMatthew G. Knepley /* Some leaves share a root with other leaves on different processes */ 5119566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(leafSection, p, &neighbors)); 512b0a623aaSMatthew G. Knepley if (neighbors) { 5139566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(leafSection, p, &noff)); 5149566063dSJacob Faibussowitsch PetscCall(DMPlexGetAdjacency(dm, p, &adjSize, &adj)); 515b0a623aaSMatthew G. Knepley for (n = 0; n < neighbors; ++n) { 516b0a623aaSMatthew G. Knepley const PetscInt remoteRank = nrank[noff+n]; 517b0a623aaSMatthew G. Knepley 518b0a623aaSMatthew G. Knepley if (remoteRank == rank) continue; 5199566063dSJacob Faibussowitsch for (a = 0; a < adjSize; ++a) PetscCall(DMLabelSetValue(ovAdjByRank, adj[a], remoteRank)); 520b0a623aaSMatthew G. Knepley } 521b0a623aaSMatthew G. Knepley } 522b0a623aaSMatthew G. Knepley } 523b0a623aaSMatthew G. Knepley /* Roots are shared with leaves */ 5249566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(rootSection, p, &neighbors)); 525b0a623aaSMatthew G. Knepley if (!neighbors) continue; 5269566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(rootSection, p, &noff)); 5279566063dSJacob Faibussowitsch PetscCall(DMPlexGetAdjacency(dm, p, &adjSize, &adj)); 528b0a623aaSMatthew G. Knepley for (n = 0; n < neighbors; ++n) { 529b0a623aaSMatthew G. Knepley const PetscInt remoteRank = rrank[noff+n]; 530b0a623aaSMatthew G. Knepley 531b0a623aaSMatthew G. Knepley if (remoteRank == rank) continue; 5329566063dSJacob Faibussowitsch for (a = 0; a < adjSize; ++a) PetscCall(DMLabelSetValue(ovAdjByRank, adj[a], remoteRank)); 533b0a623aaSMatthew G. Knepley } 534b0a623aaSMatthew G. Knepley } 5359566063dSJacob Faibussowitsch PetscCall(PetscFree(adj)); 5369566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(rootrank, &rrank)); 5379566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(leafrank, &nrank)); 53824d039d7SMichael Lange /* Add additional overlap levels */ 539be200f8dSMichael Lange for (l = 1; l < levels; l++) { 540be200f8dSMichael Lange /* Propagate point donations over SF to capture remote connections */ 5419566063dSJacob Faibussowitsch PetscCall(DMPlexPartitionLabelPropagate(dm, ovAdjByRank)); 542be200f8dSMichael Lange /* Add next level of point donations to the label */ 5439566063dSJacob Faibussowitsch PetscCall(DMPlexPartitionLabelAdjacency(dm, ovAdjByRank)); 544be200f8dSMichael Lange } 54526a7d390SMatthew G. Knepley /* We require the closure in the overlap */ 5469566063dSJacob Faibussowitsch PetscCall(DMPlexPartitionLabelClosure(dm, ovAdjByRank)); 5479566063dSJacob Faibussowitsch PetscCall(PetscOptionsHasName(((PetscObject) dm)->options,((PetscObject) dm)->prefix, "-overlap_view", &flg)); 548e540f424SMichael Lange if (flg) { 549825f8a23SLisandro Dalcin PetscViewer viewer; 5509566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIGetStdout(PetscObjectComm((PetscObject)dm), &viewer)); 5519566063dSJacob Faibussowitsch PetscCall(DMLabelView(ovAdjByRank, viewer)); 552b0a623aaSMatthew G. Knepley } 553874ddda9SLisandro Dalcin /* Invert sender to receiver label */ 5549566063dSJacob Faibussowitsch PetscCall(DMLabelCreate(PETSC_COMM_SELF, "Overlap label", ovLabel)); 5559566063dSJacob Faibussowitsch PetscCall(DMPlexPartitionLabelInvert(dm, ovAdjByRank, NULL, *ovLabel)); 556a9f1d5b2SMichael Lange /* Add owned points, except for shared local points */ 5579566063dSJacob Faibussowitsch for (p = pStart; p < pEnd; ++p) PetscCall(DMLabelSetValue(*ovLabel, p, rank)); 558e540f424SMichael Lange for (l = 0; l < nleaves; ++l) { 5599566063dSJacob Faibussowitsch PetscCall(DMLabelClearValue(*ovLabel, local[l], rank)); 5609566063dSJacob Faibussowitsch PetscCall(DMLabelSetValue(*ovLabel, remote[l].index, remote[l].rank)); 561e540f424SMichael Lange } 562e540f424SMichael Lange /* Clean up */ 5639566063dSJacob Faibussowitsch PetscCall(DMLabelDestroy(&ovAdjByRank)); 564b0a623aaSMatthew G. Knepley PetscFunctionReturn(0); 565b0a623aaSMatthew G. Knepley } 56670034214SMatthew G. Knepley 56724cc2ca5SMatthew G. Knepley /*@C 56824cc2ca5SMatthew G. Knepley DMPlexCreateOverlapMigrationSF - Create an SF describing the new mesh distribution to make the overlap described by the input SF 56924cc2ca5SMatthew G. Knepley 570d083f849SBarry Smith Collective on dm 57124cc2ca5SMatthew G. Knepley 57224cc2ca5SMatthew G. Knepley Input Parameters: 57324cc2ca5SMatthew G. Knepley + dm - The DM 57424cc2ca5SMatthew G. Knepley - overlapSF - The SF mapping ghost points in overlap to owner points on other processes 57524cc2ca5SMatthew G. Knepley 576064ec1f3Sprj- Output Parameter: 577a2b725a8SWilliam Gropp . migrationSF - An SF that maps original points in old locations to points in new locations 57824cc2ca5SMatthew G. Knepley 57924cc2ca5SMatthew G. Knepley Level: developer 58024cc2ca5SMatthew G. Knepley 581db781477SPatrick Sanan .seealso: `DMPlexCreateOverlapLabel()`, `DMPlexDistributeOverlap()`, `DMPlexDistribute()` 58224cc2ca5SMatthew G. Knepley @*/ 58346f9b1c3SMichael Lange PetscErrorCode DMPlexCreateOverlapMigrationSF(DM dm, PetscSF overlapSF, PetscSF *migrationSF) 58446f9b1c3SMichael Lange { 58546f9b1c3SMichael Lange MPI_Comm comm; 5869852e123SBarry Smith PetscMPIInt rank, size; 58746f9b1c3SMichael Lange PetscInt d, dim, p, pStart, pEnd, nroots, nleaves, newLeaves, point, numSharedPoints; 58846f9b1c3SMichael Lange PetscInt *pointDepths, *remoteDepths, *ilocal; 58946f9b1c3SMichael Lange PetscInt *depthRecv, *depthShift, *depthIdx; 59046f9b1c3SMichael Lange PetscSFNode *iremote; 59146f9b1c3SMichael Lange PetscSF pointSF; 59246f9b1c3SMichael Lange const PetscInt *sharedLocal; 59346f9b1c3SMichael Lange const PetscSFNode *overlapRemote, *sharedRemote; 59446f9b1c3SMichael Lange 59546f9b1c3SMichael Lange PetscFunctionBegin; 59646f9b1c3SMichael Lange PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 5979566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)dm, &comm)); 5989566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 5999566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 6009566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 60146f9b1c3SMichael Lange 60246f9b1c3SMichael Lange /* Before building the migration SF we need to know the new stratum offsets */ 6039566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(overlapSF, &nroots, &nleaves, NULL, &overlapRemote)); 6049566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(nroots, &pointDepths, nleaves, &remoteDepths)); 60546f9b1c3SMichael Lange for (d=0; d<dim+1; d++) { 6069566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthStratum(dm, d, &pStart, &pEnd)); 60746f9b1c3SMichael Lange for (p=pStart; p<pEnd; p++) pointDepths[p] = d; 60846f9b1c3SMichael Lange } 60946f9b1c3SMichael Lange for (p=0; p<nleaves; p++) remoteDepths[p] = -1; 6109566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(overlapSF, MPIU_INT, pointDepths, remoteDepths,MPI_REPLACE)); 6119566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(overlapSF, MPIU_INT, pointDepths, remoteDepths,MPI_REPLACE)); 61246f9b1c3SMichael Lange 6132d4ee042Sprj- /* Count received points in each stratum and compute the internal strata shift */ 6149566063dSJacob Faibussowitsch PetscCall(PetscMalloc3(dim+1, &depthRecv, dim+1, &depthShift, dim+1, &depthIdx)); 61546f9b1c3SMichael Lange for (d=0; d<dim+1; d++) depthRecv[d]=0; 61646f9b1c3SMichael Lange for (p=0; p<nleaves; p++) depthRecv[remoteDepths[p]]++; 61746f9b1c3SMichael Lange depthShift[dim] = 0; 61846f9b1c3SMichael Lange for (d=0; d<dim; d++) depthShift[d] = depthRecv[dim]; 61946f9b1c3SMichael Lange for (d=1; d<dim; d++) depthShift[d] += depthRecv[0]; 62046f9b1c3SMichael Lange for (d=dim-2; d>0; d--) depthShift[d] += depthRecv[d+1]; 62146f9b1c3SMichael Lange for (d=0; d<dim+1; d++) { 6229566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthStratum(dm, d, &pStart, &pEnd)); 62346f9b1c3SMichael Lange depthIdx[d] = pStart + depthShift[d]; 62446f9b1c3SMichael Lange } 62546f9b1c3SMichael Lange 62646f9b1c3SMichael Lange /* Form the overlap SF build an SF that describes the full overlap migration SF */ 6279566063dSJacob Faibussowitsch PetscCall(DMPlexGetChart(dm, &pStart, &pEnd)); 62846f9b1c3SMichael Lange newLeaves = pEnd - pStart + nleaves; 6299566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(newLeaves, &ilocal)); 6309566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(newLeaves, &iremote)); 63146f9b1c3SMichael Lange /* First map local points to themselves */ 63246f9b1c3SMichael Lange for (d=0; d<dim+1; d++) { 6339566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthStratum(dm, d, &pStart, &pEnd)); 63446f9b1c3SMichael Lange for (p=pStart; p<pEnd; p++) { 63546f9b1c3SMichael Lange point = p + depthShift[d]; 63646f9b1c3SMichael Lange ilocal[point] = point; 63746f9b1c3SMichael Lange iremote[point].index = p; 63846f9b1c3SMichael Lange iremote[point].rank = rank; 63946f9b1c3SMichael Lange depthIdx[d]++; 64046f9b1c3SMichael Lange } 64146f9b1c3SMichael Lange } 64246f9b1c3SMichael Lange 64346f9b1c3SMichael Lange /* Add in the remote roots for currently shared points */ 6449566063dSJacob Faibussowitsch PetscCall(DMGetPointSF(dm, &pointSF)); 6459566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(pointSF, NULL, &numSharedPoints, &sharedLocal, &sharedRemote)); 64646f9b1c3SMichael Lange for (d=0; d<dim+1; d++) { 6479566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthStratum(dm, d, &pStart, &pEnd)); 64846f9b1c3SMichael Lange for (p=0; p<numSharedPoints; p++) { 64946f9b1c3SMichael Lange if (pStart <= sharedLocal[p] && sharedLocal[p] < pEnd) { 65046f9b1c3SMichael Lange point = sharedLocal[p] + depthShift[d]; 65146f9b1c3SMichael Lange iremote[point].index = sharedRemote[p].index; 65246f9b1c3SMichael Lange iremote[point].rank = sharedRemote[p].rank; 65346f9b1c3SMichael Lange } 65446f9b1c3SMichael Lange } 65546f9b1c3SMichael Lange } 65646f9b1c3SMichael Lange 65746f9b1c3SMichael Lange /* Now add the incoming overlap points */ 65846f9b1c3SMichael Lange for (p=0; p<nleaves; p++) { 65946f9b1c3SMichael Lange point = depthIdx[remoteDepths[p]]; 66046f9b1c3SMichael Lange ilocal[point] = point; 66146f9b1c3SMichael Lange iremote[point].index = overlapRemote[p].index; 66246f9b1c3SMichael Lange iremote[point].rank = overlapRemote[p].rank; 66346f9b1c3SMichael Lange depthIdx[remoteDepths[p]]++; 66446f9b1c3SMichael Lange } 6659566063dSJacob Faibussowitsch PetscCall(PetscFree2(pointDepths,remoteDepths)); 66646f9b1c3SMichael Lange 6679566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(comm, migrationSF)); 6689566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject) *migrationSF, "Overlap Migration SF")); 6699566063dSJacob Faibussowitsch PetscCall(PetscSFSetFromOptions(*migrationSF)); 6709566063dSJacob Faibussowitsch PetscCall(DMPlexGetChart(dm, &pStart, &pEnd)); 6719566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(*migrationSF, pEnd-pStart, newLeaves, ilocal, PETSC_OWN_POINTER, iremote, PETSC_OWN_POINTER)); 67246f9b1c3SMichael Lange 6739566063dSJacob Faibussowitsch PetscCall(PetscFree3(depthRecv, depthShift, depthIdx)); 67470034214SMatthew G. Knepley PetscFunctionReturn(0); 67570034214SMatthew G. Knepley } 67670034214SMatthew G. Knepley 677a9f1d5b2SMichael Lange /*@ 678f0e73a3dSToby Isaac DMPlexStratifyMigrationSF - Rearrange the leaves of a migration sf for stratification. 679a9f1d5b2SMichael Lange 680064ec1f3Sprj- Input Parameters: 681a9f1d5b2SMichael Lange + dm - The DM 682a9f1d5b2SMichael Lange - sf - A star forest with non-ordered leaves, usually defining a DM point migration 683a9f1d5b2SMichael Lange 684a9f1d5b2SMichael Lange Output Parameter: 685a9f1d5b2SMichael Lange . migrationSF - A star forest with added leaf indirection that ensures the resulting DM is stratified 686a9f1d5b2SMichael Lange 687412e9a14SMatthew G. Knepley Note: 688412e9a14SMatthew G. Knepley This lexicographically sorts by (depth, cellType) 689412e9a14SMatthew G. Knepley 690a9f1d5b2SMichael Lange Level: developer 691a9f1d5b2SMichael Lange 692db781477SPatrick Sanan .seealso: `DMPlexPartitionLabelCreateSF()`, `DMPlexDistribute()`, `DMPlexDistributeOverlap()` 693a9f1d5b2SMichael Lange @*/ 694a9f1d5b2SMichael Lange PetscErrorCode DMPlexStratifyMigrationSF(DM dm, PetscSF sf, PetscSF *migrationSF) 695a9f1d5b2SMichael Lange { 696a9f1d5b2SMichael Lange MPI_Comm comm; 6979852e123SBarry Smith PetscMPIInt rank, size; 698412e9a14SMatthew G. Knepley PetscInt d, ldepth, depth, dim, p, pStart, pEnd, nroots, nleaves; 699412e9a14SMatthew G. Knepley PetscSFNode *pointDepths, *remoteDepths; 700412e9a14SMatthew G. Knepley PetscInt *ilocal; 701a9f1d5b2SMichael Lange PetscInt *depthRecv, *depthShift, *depthIdx; 702412e9a14SMatthew G. Knepley PetscInt *ctRecv, *ctShift, *ctIdx; 703a9f1d5b2SMichael Lange const PetscSFNode *iremote; 704a9f1d5b2SMichael Lange 705a9f1d5b2SMichael Lange PetscFunctionBegin; 706a9f1d5b2SMichael Lange PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 7079566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject) dm, &comm)); 7089566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 7099566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 7109566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepth(dm, &ldepth)); 7119566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 7121c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&ldepth, &depth, 1, MPIU_INT, MPI_MAX, comm)); 71363a3b9bcSJacob Faibussowitsch PetscCheck(!(ldepth >= 0) || !(depth != ldepth),PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Inconsistent Plex depth %" PetscInt_FMT " != %" PetscInt_FMT, ldepth, depth); 7149566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DMPLEX_PartStratSF,dm,0,0,0)); 715a9f1d5b2SMichael Lange 716a9f1d5b2SMichael Lange /* Before building the migration SF we need to know the new stratum offsets */ 7179566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(sf, &nroots, &nleaves, NULL, &iremote)); 7189566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(nroots, &pointDepths, nleaves, &remoteDepths)); 7197fab53ddSMatthew G. Knepley for (d = 0; d < depth+1; ++d) { 7209566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthStratum(dm, d, &pStart, &pEnd)); 721f0e73a3dSToby Isaac for (p = pStart; p < pEnd; ++p) { 722412e9a14SMatthew G. Knepley DMPolytopeType ct; 723f0e73a3dSToby Isaac 7249566063dSJacob Faibussowitsch PetscCall(DMPlexGetCellType(dm, p, &ct)); 725412e9a14SMatthew G. Knepley pointDepths[p].index = d; 726412e9a14SMatthew G. Knepley pointDepths[p].rank = ct; 727f0e73a3dSToby Isaac } 728412e9a14SMatthew G. Knepley } 729412e9a14SMatthew G. Knepley for (p = 0; p < nleaves; ++p) {remoteDepths[p].index = -1; remoteDepths[p].rank = -1;} 7309566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(sf, MPIU_2INT, pointDepths, remoteDepths,MPI_REPLACE)); 7319566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(sf, MPIU_2INT, pointDepths, remoteDepths,MPI_REPLACE)); 732412e9a14SMatthew G. Knepley /* Count received points in each stratum and compute the internal strata shift */ 7339566063dSJacob Faibussowitsch PetscCall(PetscCalloc6(depth+1, &depthRecv, depth+1, &depthShift, depth+1, &depthIdx, DM_NUM_POLYTOPES, &ctRecv, DM_NUM_POLYTOPES, &ctShift, DM_NUM_POLYTOPES, &ctIdx)); 734412e9a14SMatthew G. Knepley for (p = 0; p < nleaves; ++p) { 735412e9a14SMatthew G. Knepley if (remoteDepths[p].rank < 0) { 736412e9a14SMatthew G. Knepley ++depthRecv[remoteDepths[p].index]; 737412e9a14SMatthew G. Knepley } else { 738412e9a14SMatthew G. Knepley ++ctRecv[remoteDepths[p].rank]; 739412e9a14SMatthew G. Knepley } 740412e9a14SMatthew G. Knepley } 741412e9a14SMatthew G. Knepley { 742412e9a14SMatthew G. Knepley PetscInt depths[4], dims[4], shift = 0, i, c; 743412e9a14SMatthew G. Knepley 7448238f61eSMatthew G. Knepley /* Cells (depth), Vertices (0), Faces (depth-1), Edges (1) 7458238f61eSMatthew G. Knepley Consider DM_POLYTOPE_FV_GHOST and DM_POLYTOPE_INTERIOR_GHOST as cells 7468238f61eSMatthew G. Knepley */ 747412e9a14SMatthew G. Knepley depths[0] = depth; depths[1] = 0; depths[2] = depth-1; depths[3] = 1; 748412e9a14SMatthew G. Knepley dims[0] = dim; dims[1] = 0; dims[2] = dim-1; dims[3] = 1; 749412e9a14SMatthew G. Knepley for (i = 0; i <= depth; ++i) { 750412e9a14SMatthew G. Knepley const PetscInt dep = depths[i]; 751412e9a14SMatthew G. Knepley const PetscInt dim = dims[i]; 752412e9a14SMatthew G. Knepley 753412e9a14SMatthew G. Knepley for (c = 0; c < DM_NUM_POLYTOPES; ++c) { 7548238f61eSMatthew G. Knepley if (DMPolytopeTypeGetDim((DMPolytopeType) c) != dim && !(i == 0 && (c == DM_POLYTOPE_FV_GHOST || c == DM_POLYTOPE_INTERIOR_GHOST))) continue; 755412e9a14SMatthew G. Knepley ctShift[c] = shift; 756412e9a14SMatthew G. Knepley shift += ctRecv[c]; 757412e9a14SMatthew G. Knepley } 758412e9a14SMatthew G. Knepley depthShift[dep] = shift; 759412e9a14SMatthew G. Knepley shift += depthRecv[dep]; 760412e9a14SMatthew G. Knepley } 761412e9a14SMatthew G. Knepley for (c = 0; c < DM_NUM_POLYTOPES; ++c) { 762412e9a14SMatthew G. Knepley const PetscInt ctDim = DMPolytopeTypeGetDim((DMPolytopeType) c); 763412e9a14SMatthew G. Knepley 7648238f61eSMatthew G. Knepley if ((ctDim < 0 || ctDim > dim) && (c != DM_POLYTOPE_FV_GHOST && c != DM_POLYTOPE_INTERIOR_GHOST)) { 765412e9a14SMatthew G. Knepley ctShift[c] = shift; 766412e9a14SMatthew G. Knepley shift += ctRecv[c]; 767412e9a14SMatthew G. Knepley } 768412e9a14SMatthew G. Knepley } 769412e9a14SMatthew G. Knepley } 770a9f1d5b2SMichael Lange /* Derive a new local permutation based on stratified indices */ 7719566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nleaves, &ilocal)); 7727fab53ddSMatthew G. Knepley for (p = 0; p < nleaves; ++p) { 773412e9a14SMatthew G. Knepley const PetscInt dep = remoteDepths[p].index; 774412e9a14SMatthew G. Knepley const DMPolytopeType ct = (DMPolytopeType) remoteDepths[p].rank; 7757fab53ddSMatthew G. Knepley 776412e9a14SMatthew G. Knepley if ((PetscInt) ct < 0) { 7777fab53ddSMatthew G. Knepley ilocal[p] = depthShift[dep] + depthIdx[dep]; 778412e9a14SMatthew G. Knepley ++depthIdx[dep]; 779412e9a14SMatthew G. Knepley } else { 780412e9a14SMatthew G. Knepley ilocal[p] = ctShift[ct] + ctIdx[ct]; 781412e9a14SMatthew G. Knepley ++ctIdx[ct]; 782412e9a14SMatthew G. Knepley } 783a9f1d5b2SMichael Lange } 7849566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(comm, migrationSF)); 7859566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject) *migrationSF, "Migration SF")); 7869566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(*migrationSF, nroots, nleaves, ilocal, PETSC_OWN_POINTER, (PetscSFNode*)iremote, PETSC_COPY_VALUES)); 7879566063dSJacob Faibussowitsch PetscCall(PetscFree2(pointDepths,remoteDepths)); 7889566063dSJacob Faibussowitsch PetscCall(PetscFree6(depthRecv, depthShift, depthIdx, ctRecv, ctShift, ctIdx)); 7899566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DMPLEX_PartStratSF,dm,0,0,0)); 790a9f1d5b2SMichael Lange PetscFunctionReturn(0); 791a9f1d5b2SMichael Lange } 792a9f1d5b2SMichael Lange 79370034214SMatthew G. Knepley /*@ 79470034214SMatthew G. Knepley DMPlexDistributeField - Distribute field data to match a given PetscSF, usually the SF from mesh distribution 79570034214SMatthew G. Knepley 796d083f849SBarry Smith Collective on dm 79770034214SMatthew G. Knepley 79870034214SMatthew G. Knepley Input Parameters: 79970034214SMatthew G. Knepley + dm - The DMPlex object 80070034214SMatthew G. Knepley . pointSF - The PetscSF describing the communication pattern 80170034214SMatthew G. Knepley . originalSection - The PetscSection for existing data layout 802cb15cd0eSMatthew G. Knepley - originalVec - The existing data in a local vector 80370034214SMatthew G. Knepley 80470034214SMatthew G. Knepley Output Parameters: 80570034214SMatthew G. Knepley + newSection - The PetscSF describing the new data layout 806cb15cd0eSMatthew G. Knepley - newVec - The new data in a local vector 80770034214SMatthew G. Knepley 80870034214SMatthew G. Knepley Level: developer 80970034214SMatthew G. Knepley 810db781477SPatrick Sanan .seealso: `DMPlexDistribute()`, `DMPlexDistributeFieldIS()`, `DMPlexDistributeData()` 81170034214SMatthew G. Knepley @*/ 81270034214SMatthew G. Knepley PetscErrorCode DMPlexDistributeField(DM dm, PetscSF pointSF, PetscSection originalSection, Vec originalVec, PetscSection newSection, Vec newVec) 81370034214SMatthew G. Knepley { 81470034214SMatthew G. Knepley PetscSF fieldSF; 81570034214SMatthew G. Knepley PetscInt *remoteOffsets, fieldSize; 81670034214SMatthew G. Knepley PetscScalar *originalValues, *newValues; 81770034214SMatthew G. Knepley 81870034214SMatthew G. Knepley PetscFunctionBegin; 8199566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DMPLEX_DistributeField,dm,0,0,0)); 8209566063dSJacob Faibussowitsch PetscCall(PetscSFDistributeSection(pointSF, originalSection, &remoteOffsets, newSection)); 82170034214SMatthew G. Knepley 8229566063dSJacob Faibussowitsch PetscCall(PetscSectionGetStorageSize(newSection, &fieldSize)); 8239566063dSJacob Faibussowitsch PetscCall(VecSetSizes(newVec, fieldSize, PETSC_DETERMINE)); 8249566063dSJacob Faibussowitsch PetscCall(VecSetType(newVec,dm->vectype)); 82570034214SMatthew G. Knepley 8269566063dSJacob Faibussowitsch PetscCall(VecGetArray(originalVec, &originalValues)); 8279566063dSJacob Faibussowitsch PetscCall(VecGetArray(newVec, &newValues)); 8289566063dSJacob Faibussowitsch PetscCall(PetscSFCreateSectionSF(pointSF, originalSection, remoteOffsets, newSection, &fieldSF)); 8299566063dSJacob Faibussowitsch PetscCall(PetscFree(remoteOffsets)); 8309566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(fieldSF, MPIU_SCALAR, originalValues, newValues,MPI_REPLACE)); 8319566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(fieldSF, MPIU_SCALAR, originalValues, newValues,MPI_REPLACE)); 8329566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&fieldSF)); 8339566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(newVec, &newValues)); 8349566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(originalVec, &originalValues)); 8359566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DMPLEX_DistributeField,dm,0,0,0)); 83670034214SMatthew G. Knepley PetscFunctionReturn(0); 83770034214SMatthew G. Knepley } 83870034214SMatthew G. Knepley 83970034214SMatthew G. Knepley /*@ 84070034214SMatthew G. Knepley DMPlexDistributeFieldIS - Distribute field data to match a given PetscSF, usually the SF from mesh distribution 84170034214SMatthew G. Knepley 842d083f849SBarry Smith Collective on dm 84370034214SMatthew G. Knepley 84470034214SMatthew G. Knepley Input Parameters: 84570034214SMatthew G. Knepley + dm - The DMPlex object 84670034214SMatthew G. Knepley . pointSF - The PetscSF describing the communication pattern 84770034214SMatthew G. Knepley . originalSection - The PetscSection for existing data layout 84870034214SMatthew G. Knepley - originalIS - The existing data 84970034214SMatthew G. Knepley 85070034214SMatthew G. Knepley Output Parameters: 85170034214SMatthew G. Knepley + newSection - The PetscSF describing the new data layout 85270034214SMatthew G. Knepley - newIS - The new data 85370034214SMatthew G. Knepley 85470034214SMatthew G. Knepley Level: developer 85570034214SMatthew G. Knepley 856db781477SPatrick Sanan .seealso: `DMPlexDistribute()`, `DMPlexDistributeField()`, `DMPlexDistributeData()` 85770034214SMatthew G. Knepley @*/ 85870034214SMatthew G. Knepley PetscErrorCode DMPlexDistributeFieldIS(DM dm, PetscSF pointSF, PetscSection originalSection, IS originalIS, PetscSection newSection, IS *newIS) 85970034214SMatthew G. Knepley { 86070034214SMatthew G. Knepley PetscSF fieldSF; 86170034214SMatthew G. Knepley PetscInt *newValues, *remoteOffsets, fieldSize; 86270034214SMatthew G. Knepley const PetscInt *originalValues; 86370034214SMatthew G. Knepley 86470034214SMatthew G. Knepley PetscFunctionBegin; 8659566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DMPLEX_DistributeField,dm,0,0,0)); 8669566063dSJacob Faibussowitsch PetscCall(PetscSFDistributeSection(pointSF, originalSection, &remoteOffsets, newSection)); 86770034214SMatthew G. Knepley 8689566063dSJacob Faibussowitsch PetscCall(PetscSectionGetStorageSize(newSection, &fieldSize)); 8699566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(fieldSize, &newValues)); 87070034214SMatthew G. Knepley 8719566063dSJacob Faibussowitsch PetscCall(ISGetIndices(originalIS, &originalValues)); 8729566063dSJacob Faibussowitsch PetscCall(PetscSFCreateSectionSF(pointSF, originalSection, remoteOffsets, newSection, &fieldSF)); 8739566063dSJacob Faibussowitsch PetscCall(PetscFree(remoteOffsets)); 8749566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(fieldSF, MPIU_INT, (PetscInt *) originalValues, newValues,MPI_REPLACE)); 8759566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(fieldSF, MPIU_INT, (PetscInt *) originalValues, newValues,MPI_REPLACE)); 8769566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&fieldSF)); 8779566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(originalIS, &originalValues)); 8789566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject) pointSF), fieldSize, newValues, PETSC_OWN_POINTER, newIS)); 8799566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DMPLEX_DistributeField,dm,0,0,0)); 88070034214SMatthew G. Knepley PetscFunctionReturn(0); 88170034214SMatthew G. Knepley } 88270034214SMatthew G. Knepley 88370034214SMatthew G. Knepley /*@ 88470034214SMatthew G. Knepley DMPlexDistributeData - Distribute field data to match a given PetscSF, usually the SF from mesh distribution 88570034214SMatthew G. Knepley 886d083f849SBarry Smith Collective on dm 88770034214SMatthew G. Knepley 88870034214SMatthew G. Knepley Input Parameters: 88970034214SMatthew G. Knepley + dm - The DMPlex object 89070034214SMatthew G. Knepley . pointSF - The PetscSF describing the communication pattern 89170034214SMatthew G. Knepley . originalSection - The PetscSection for existing data layout 89270034214SMatthew G. Knepley . datatype - The type of data 89370034214SMatthew G. Knepley - originalData - The existing data 89470034214SMatthew G. Knepley 89570034214SMatthew G. Knepley Output Parameters: 89670034214SMatthew G. Knepley + newSection - The PetscSection describing the new data layout 89770034214SMatthew G. Knepley - newData - The new data 89870034214SMatthew G. Knepley 89970034214SMatthew G. Knepley Level: developer 90070034214SMatthew G. Knepley 901db781477SPatrick Sanan .seealso: `DMPlexDistribute()`, `DMPlexDistributeField()` 90270034214SMatthew G. Knepley @*/ 90370034214SMatthew G. Knepley PetscErrorCode DMPlexDistributeData(DM dm, PetscSF pointSF, PetscSection originalSection, MPI_Datatype datatype, void *originalData, PetscSection newSection, void **newData) 90470034214SMatthew G. Knepley { 90570034214SMatthew G. Knepley PetscSF fieldSF; 90670034214SMatthew G. Knepley PetscInt *remoteOffsets, fieldSize; 90770034214SMatthew G. Knepley PetscMPIInt dataSize; 90870034214SMatthew G. Knepley 90970034214SMatthew G. Knepley PetscFunctionBegin; 9109566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DMPLEX_DistributeData,dm,0,0,0)); 9119566063dSJacob Faibussowitsch PetscCall(PetscSFDistributeSection(pointSF, originalSection, &remoteOffsets, newSection)); 91270034214SMatthew G. Knepley 9139566063dSJacob Faibussowitsch PetscCall(PetscSectionGetStorageSize(newSection, &fieldSize)); 9149566063dSJacob Faibussowitsch PetscCallMPI(MPI_Type_size(datatype, &dataSize)); 9159566063dSJacob Faibussowitsch PetscCall(PetscMalloc(fieldSize * dataSize, newData)); 91670034214SMatthew G. Knepley 9179566063dSJacob Faibussowitsch PetscCall(PetscSFCreateSectionSF(pointSF, originalSection, remoteOffsets, newSection, &fieldSF)); 9189566063dSJacob Faibussowitsch PetscCall(PetscFree(remoteOffsets)); 9199566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(fieldSF, datatype, originalData, *newData,MPI_REPLACE)); 9209566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(fieldSF, datatype, originalData, *newData,MPI_REPLACE)); 9219566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&fieldSF)); 9229566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DMPLEX_DistributeData,dm,0,0,0)); 92370034214SMatthew G. Knepley PetscFunctionReturn(0); 92470034214SMatthew G. Knepley } 92570034214SMatthew G. Knepley 92624cc2ca5SMatthew G. Knepley static PetscErrorCode DMPlexDistributeCones(DM dm, PetscSF migrationSF, ISLocalToGlobalMapping original, ISLocalToGlobalMapping renumbering, DM dmParallel) 927cc71bff1SMichael Lange { 928cc71bff1SMichael Lange DM_Plex *pmesh = (DM_Plex*) (dmParallel)->data; 929cc71bff1SMichael Lange MPI_Comm comm; 930cc71bff1SMichael Lange PetscSF coneSF; 931cc71bff1SMichael Lange PetscSection originalConeSection, newConeSection; 932ac04eaf7SToby Isaac PetscInt *remoteOffsets, *cones, *globCones, *newCones, newConesSize; 933cc71bff1SMichael Lange PetscBool flg; 934cc71bff1SMichael Lange 935cc71bff1SMichael Lange PetscFunctionBegin; 936cc71bff1SMichael Lange PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 9370c86c063SLisandro Dalcin PetscValidHeaderSpecific(dmParallel, DM_CLASSID, 5); 9389566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DMPLEX_DistributeCones,dm,0,0,0)); 939cc71bff1SMichael Lange /* Distribute cone section */ 9409566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)dm, &comm)); 9419566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSection(dm, &originalConeSection)); 9429566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSection(dmParallel, &newConeSection)); 9439566063dSJacob Faibussowitsch PetscCall(PetscSFDistributeSection(migrationSF, originalConeSection, &remoteOffsets, newConeSection)); 9449566063dSJacob Faibussowitsch PetscCall(DMSetUp(dmParallel)); 945cc71bff1SMichael Lange /* Communicate and renumber cones */ 9469566063dSJacob Faibussowitsch PetscCall(PetscSFCreateSectionSF(migrationSF, originalConeSection, remoteOffsets, newConeSection, &coneSF)); 9479566063dSJacob Faibussowitsch PetscCall(PetscFree(remoteOffsets)); 9489566063dSJacob Faibussowitsch PetscCall(DMPlexGetCones(dm, &cones)); 949ac04eaf7SToby Isaac if (original) { 950ac04eaf7SToby Isaac PetscInt numCones; 951ac04eaf7SToby Isaac 9529566063dSJacob Faibussowitsch PetscCall(PetscSectionGetStorageSize(originalConeSection,&numCones)); 9539566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(numCones,&globCones)); 9549566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingApplyBlock(original, numCones, cones, globCones)); 955367003a6SStefano Zampini } else { 956ac04eaf7SToby Isaac globCones = cones; 957ac04eaf7SToby Isaac } 9589566063dSJacob Faibussowitsch PetscCall(DMPlexGetCones(dmParallel, &newCones)); 9599566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(coneSF, MPIU_INT, globCones, newCones,MPI_REPLACE)); 9609566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(coneSF, MPIU_INT, globCones, newCones,MPI_REPLACE)); 961ac04eaf7SToby Isaac if (original) { 9629566063dSJacob Faibussowitsch PetscCall(PetscFree(globCones)); 963ac04eaf7SToby Isaac } 9649566063dSJacob Faibussowitsch PetscCall(PetscSectionGetStorageSize(newConeSection, &newConesSize)); 9659566063dSJacob Faibussowitsch PetscCall(ISGlobalToLocalMappingApplyBlock(renumbering, IS_GTOLM_MASK, newConesSize, newCones, NULL, newCones)); 96676bd3646SJed Brown if (PetscDefined(USE_DEBUG)) { 9673533c52bSMatthew G. Knepley PetscInt p; 9683533c52bSMatthew G. Knepley PetscBool valid = PETSC_TRUE; 9693533c52bSMatthew G. Knepley for (p = 0; p < newConesSize; ++p) { 97063a3b9bcSJacob Faibussowitsch if (newCones[p] < 0) {valid = PETSC_FALSE; PetscCall(PetscPrintf(PETSC_COMM_SELF, "[%d] Point %" PetscInt_FMT " not in overlap SF\n", PetscGlobalRank,p));} 9713533c52bSMatthew G. Knepley } 97228b400f6SJacob Faibussowitsch PetscCheck(valid,PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Invalid global to local map"); 9733533c52bSMatthew G. Knepley } 9749566063dSJacob Faibussowitsch PetscCall(PetscOptionsHasName(((PetscObject) dm)->options,((PetscObject) dm)->prefix, "-cones_view", &flg)); 975cc71bff1SMichael Lange if (flg) { 9769566063dSJacob Faibussowitsch PetscCall(PetscPrintf(comm, "Serial Cone Section:\n")); 9779566063dSJacob Faibussowitsch PetscCall(PetscSectionView(originalConeSection, PETSC_VIEWER_STDOUT_(comm))); 9789566063dSJacob Faibussowitsch PetscCall(PetscPrintf(comm, "Parallel Cone Section:\n")); 9799566063dSJacob Faibussowitsch PetscCall(PetscSectionView(newConeSection, PETSC_VIEWER_STDOUT_(comm))); 9809566063dSJacob Faibussowitsch PetscCall(PetscSFView(coneSF, NULL)); 981cc71bff1SMichael Lange } 9829566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeOrientations(dm, &cones)); 9839566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeOrientations(dmParallel, &newCones)); 9849566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(coneSF, MPIU_INT, cones, newCones,MPI_REPLACE)); 9859566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(coneSF, MPIU_INT, cones, newCones,MPI_REPLACE)); 9869566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&coneSF)); 9879566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DMPLEX_DistributeCones,dm,0,0,0)); 988eaf898f9SPatrick Sanan /* Create supports and stratify DMPlex */ 989cc71bff1SMichael Lange { 990cc71bff1SMichael Lange PetscInt pStart, pEnd; 991cc71bff1SMichael Lange 9929566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(pmesh->coneSection, &pStart, &pEnd)); 9939566063dSJacob Faibussowitsch PetscCall(PetscSectionSetChart(pmesh->supportSection, pStart, pEnd)); 994cc71bff1SMichael Lange } 9959566063dSJacob Faibussowitsch PetscCall(DMPlexSymmetrize(dmParallel)); 9969566063dSJacob Faibussowitsch PetscCall(DMPlexStratify(dmParallel)); 9971cf84007SMatthew G. Knepley { 9981cf84007SMatthew G. Knepley PetscBool useCone, useClosure, useAnchors; 9991cf84007SMatthew G. Knepley 10009566063dSJacob Faibussowitsch PetscCall(DMGetBasicAdjacency(dm, &useCone, &useClosure)); 10019566063dSJacob Faibussowitsch PetscCall(DMSetBasicAdjacency(dmParallel, useCone, useClosure)); 10029566063dSJacob Faibussowitsch PetscCall(DMPlexGetAdjacencyUseAnchors(dm, &useAnchors)); 10039566063dSJacob Faibussowitsch PetscCall(DMPlexSetAdjacencyUseAnchors(dmParallel, useAnchors)); 10041cf84007SMatthew G. Knepley } 1005cc71bff1SMichael Lange PetscFunctionReturn(0); 1006cc71bff1SMichael Lange } 1007cc71bff1SMichael Lange 100824cc2ca5SMatthew G. Knepley static PetscErrorCode DMPlexDistributeCoordinates(DM dm, PetscSF migrationSF, DM dmParallel) 10090df0e737SMichael Lange { 10100df0e737SMichael Lange MPI_Comm comm; 10119318fe57SMatthew G. Knepley DM cdm, cdmParallel; 10120df0e737SMichael Lange PetscSection originalCoordSection, newCoordSection; 10130df0e737SMichael Lange Vec originalCoordinates, newCoordinates; 10140df0e737SMichael Lange PetscInt bs; 101590b157c4SStefano Zampini PetscBool isper; 10160df0e737SMichael Lange const char *name; 10170df0e737SMichael Lange const PetscReal *maxCell, *L; 10185dc8c3f7SMatthew G. Knepley const DMBoundaryType *bd; 10190df0e737SMichael Lange 10200df0e737SMichael Lange PetscFunctionBegin; 10210df0e737SMichael Lange PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 10220c86c063SLisandro Dalcin PetscValidHeaderSpecific(dmParallel, DM_CLASSID, 3); 10230df0e737SMichael Lange 10249566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)dm, &comm)); 10259566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateSection(dm, &originalCoordSection)); 10269566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateSection(dmParallel, &newCoordSection)); 10279566063dSJacob Faibussowitsch PetscCall(DMGetCoordinatesLocal(dm, &originalCoordinates)); 10280df0e737SMichael Lange if (originalCoordinates) { 10299566063dSJacob Faibussowitsch PetscCall(VecCreate(PETSC_COMM_SELF, &newCoordinates)); 10309566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject) originalCoordinates, &name)); 10319566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject) newCoordinates, name)); 10320df0e737SMichael Lange 10339566063dSJacob Faibussowitsch PetscCall(DMPlexDistributeField(dm, migrationSF, originalCoordSection, originalCoordinates, newCoordSection, newCoordinates)); 10349566063dSJacob Faibussowitsch PetscCall(DMSetCoordinatesLocal(dmParallel, newCoordinates)); 10359566063dSJacob Faibussowitsch PetscCall(VecGetBlockSize(originalCoordinates, &bs)); 10369566063dSJacob Faibussowitsch PetscCall(VecSetBlockSize(newCoordinates, bs)); 10379566063dSJacob Faibussowitsch PetscCall(VecDestroy(&newCoordinates)); 10380df0e737SMichael Lange } 10399566063dSJacob Faibussowitsch PetscCall(DMGetPeriodicity(dm, &isper, &maxCell, &L, &bd)); 10409566063dSJacob Faibussowitsch PetscCall(DMSetPeriodicity(dmParallel, isper, maxCell, L, bd)); 10419566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDM(dm, &cdm)); 10429566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDM(dmParallel, &cdmParallel)); 10439566063dSJacob Faibussowitsch PetscCall(DMCopyDisc(cdm, cdmParallel)); 10440df0e737SMichael Lange PetscFunctionReturn(0); 10450df0e737SMichael Lange } 10460df0e737SMichael Lange 104724cc2ca5SMatthew G. Knepley static PetscErrorCode DMPlexDistributeLabels(DM dm, PetscSF migrationSF, DM dmParallel) 10480df0e737SMichael Lange { 1049df0420ecSMatthew G. Knepley DM_Plex *mesh = (DM_Plex*) dm->data; 10500df0e737SMichael Lange MPI_Comm comm; 10517980c9d4SMatthew G. Knepley DMLabel depthLabel; 10520df0e737SMichael Lange PetscMPIInt rank; 10537980c9d4SMatthew G. Knepley PetscInt depth, d, numLabels, numLocalLabels, l; 1054df0420ecSMatthew G. Knepley PetscBool hasLabels = PETSC_FALSE, lsendDepth, sendDepth; 1055df0420ecSMatthew G. Knepley PetscObjectState depthState = -1; 10560df0e737SMichael Lange 10570df0e737SMichael Lange PetscFunctionBegin; 10580df0e737SMichael Lange PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 10590c86c063SLisandro Dalcin PetscValidHeaderSpecific(dmParallel, DM_CLASSID, 3); 10600c86c063SLisandro Dalcin 10619566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DMPLEX_DistributeLabels,dm,0,0,0)); 10629566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)dm, &comm)); 10639566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 10640df0e737SMichael Lange 1065df0420ecSMatthew G. Knepley /* If the user has changed the depth label, communicate it instead */ 10669566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepth(dm, &depth)); 10679566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthLabel(dm, &depthLabel)); 10689566063dSJacob Faibussowitsch if (depthLabel) PetscCall(PetscObjectStateGet((PetscObject) depthLabel, &depthState)); 1069df0420ecSMatthew G. Knepley lsendDepth = mesh->depthState != depthState ? PETSC_TRUE : PETSC_FALSE; 10701c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&lsendDepth, &sendDepth, 1, MPIU_BOOL, MPI_LOR, comm)); 1071df0420ecSMatthew G. Knepley if (sendDepth) { 10729566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthLabel(dmParallel, &dmParallel->depthLabel)); 10739566063dSJacob Faibussowitsch PetscCall(DMRemoveLabelBySelf(dmParallel, &dmParallel->depthLabel, PETSC_FALSE)); 1074df0420ecSMatthew G. Knepley } 1075d995df53SMatthew G. Knepley /* Everyone must have either the same number of labels, or none */ 10769566063dSJacob Faibussowitsch PetscCall(DMGetNumLabels(dm, &numLocalLabels)); 1077d995df53SMatthew G. Knepley numLabels = numLocalLabels; 10789566063dSJacob Faibussowitsch PetscCallMPI(MPI_Bcast(&numLabels, 1, MPIU_INT, 0, comm)); 1079627847f0SMatthew G. Knepley if (numLabels == numLocalLabels) hasLabels = PETSC_TRUE; 10805d80c0bfSVaclav Hapla for (l = 0; l < numLabels; ++l) { 1081bdd2d751SMichael Lange DMLabel label = NULL, labelNew = NULL; 108283e10cb3SLisandro Dalcin PetscBool isDepth, lisOutput = PETSC_TRUE, isOutput; 1083d67d17b1SMatthew G. Knepley const char *name = NULL; 10840df0e737SMichael Lange 1085d67d17b1SMatthew G. Knepley if (hasLabels) { 10869566063dSJacob Faibussowitsch PetscCall(DMGetLabelByNum(dm, l, &label)); 10870df0e737SMichael Lange /* Skip "depth" because it is recreated */ 10889566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject) label, &name)); 10899566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(name, "depth", &isDepth)); 1090d67d17b1SMatthew G. Knepley } 10919566063dSJacob Faibussowitsch PetscCallMPI(MPI_Bcast(&isDepth, 1, MPIU_BOOL, 0, comm)); 109283e10cb3SLisandro Dalcin if (isDepth && !sendDepth) continue; 10939566063dSJacob Faibussowitsch PetscCall(DMLabelDistribute(label, migrationSF, &labelNew)); 109483e10cb3SLisandro Dalcin if (isDepth) { 10957980c9d4SMatthew G. Knepley /* Put in any missing strata which can occur if users are managing the depth label themselves */ 10967980c9d4SMatthew G. Knepley PetscInt gdepth; 10977980c9d4SMatthew G. Knepley 10981c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&depth, &gdepth, 1, MPIU_INT, MPI_MAX, comm)); 109963a3b9bcSJacob Faibussowitsch PetscCheck(!(depth >= 0) || !(gdepth != depth),PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Inconsistent Plex depth %" PetscInt_FMT " != %" PetscInt_FMT, depth, gdepth); 11007980c9d4SMatthew G. Knepley for (d = 0; d <= gdepth; ++d) { 11017980c9d4SMatthew G. Knepley PetscBool has; 11027980c9d4SMatthew G. Knepley 11039566063dSJacob Faibussowitsch PetscCall(DMLabelHasStratum(labelNew, d, &has)); 11049566063dSJacob Faibussowitsch if (!has) PetscCall(DMLabelAddStratum(labelNew, d)); 11057980c9d4SMatthew G. Knepley } 11067980c9d4SMatthew G. Knepley } 11079566063dSJacob Faibussowitsch PetscCall(DMAddLabel(dmParallel, labelNew)); 110883e10cb3SLisandro Dalcin /* Put the output flag in the new label */ 11099566063dSJacob Faibussowitsch if (hasLabels) PetscCall(DMGetLabelOutput(dm, name, &lisOutput)); 11101c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&lisOutput, &isOutput, 1, MPIU_BOOL, MPI_LAND, comm)); 11119566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject) labelNew, &name)); 11129566063dSJacob Faibussowitsch PetscCall(DMSetLabelOutput(dmParallel, name, isOutput)); 11139566063dSJacob Faibussowitsch PetscCall(DMLabelDestroy(&labelNew)); 11140df0e737SMichael Lange } 11159566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DMPLEX_DistributeLabels,dm,0,0,0)); 11160df0e737SMichael Lange PetscFunctionReturn(0); 11170df0e737SMichael Lange } 11180df0e737SMichael Lange 111924cc2ca5SMatthew G. Knepley static PetscErrorCode DMPlexDistributeSetupTree(DM dm, PetscSF migrationSF, ISLocalToGlobalMapping original, ISLocalToGlobalMapping renumbering, DM dmParallel) 1120a6f36705SMichael Lange { 112115078cd4SMichael Lange DM_Plex *mesh = (DM_Plex*) dm->data; 112215078cd4SMichael Lange DM_Plex *pmesh = (DM_Plex*) (dmParallel)->data; 1123a6f36705SMichael Lange MPI_Comm comm; 1124a6f36705SMichael Lange DM refTree; 1125a6f36705SMichael Lange PetscSection origParentSection, newParentSection; 1126a6f36705SMichael Lange PetscInt *origParents, *origChildIDs; 1127a6f36705SMichael Lange PetscBool flg; 1128a6f36705SMichael Lange 1129a6f36705SMichael Lange PetscFunctionBegin; 1130a6f36705SMichael Lange PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 11310c86c063SLisandro Dalcin PetscValidHeaderSpecific(dmParallel, DM_CLASSID, 5); 11329566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)dm, &comm)); 1133a6f36705SMichael Lange 1134a6f36705SMichael Lange /* Set up tree */ 11359566063dSJacob Faibussowitsch PetscCall(DMPlexGetReferenceTree(dm,&refTree)); 11369566063dSJacob Faibussowitsch PetscCall(DMPlexSetReferenceTree(dmParallel,refTree)); 11379566063dSJacob Faibussowitsch PetscCall(DMPlexGetTree(dm,&origParentSection,&origParents,&origChildIDs,NULL,NULL)); 1138a6f36705SMichael Lange if (origParentSection) { 1139a6f36705SMichael Lange PetscInt pStart, pEnd; 114008633170SToby Isaac PetscInt *newParents, *newChildIDs, *globParents; 1141a6f36705SMichael Lange PetscInt *remoteOffsetsParents, newParentSize; 1142a6f36705SMichael Lange PetscSF parentSF; 1143a6f36705SMichael Lange 11449566063dSJacob Faibussowitsch PetscCall(DMPlexGetChart(dmParallel, &pStart, &pEnd)); 11459566063dSJacob Faibussowitsch PetscCall(PetscSectionCreate(PetscObjectComm((PetscObject)dmParallel),&newParentSection)); 11469566063dSJacob Faibussowitsch PetscCall(PetscSectionSetChart(newParentSection,pStart,pEnd)); 11479566063dSJacob Faibussowitsch PetscCall(PetscSFDistributeSection(migrationSF, origParentSection, &remoteOffsetsParents, newParentSection)); 11489566063dSJacob Faibussowitsch PetscCall(PetscSFCreateSectionSF(migrationSF, origParentSection, remoteOffsetsParents, newParentSection, &parentSF)); 11499566063dSJacob Faibussowitsch PetscCall(PetscFree(remoteOffsetsParents)); 11509566063dSJacob Faibussowitsch PetscCall(PetscSectionGetStorageSize(newParentSection,&newParentSize)); 11519566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(newParentSize,&newParents,newParentSize,&newChildIDs)); 115208633170SToby Isaac if (original) { 115308633170SToby Isaac PetscInt numParents; 115408633170SToby Isaac 11559566063dSJacob Faibussowitsch PetscCall(PetscSectionGetStorageSize(origParentSection,&numParents)); 11569566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(numParents,&globParents)); 11579566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingApplyBlock(original, numParents, origParents, globParents)); 115808633170SToby Isaac } 115908633170SToby Isaac else { 116008633170SToby Isaac globParents = origParents; 116108633170SToby Isaac } 11629566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(parentSF, MPIU_INT, globParents, newParents,MPI_REPLACE)); 11639566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(parentSF, MPIU_INT, globParents, newParents,MPI_REPLACE)); 116408633170SToby Isaac if (original) { 11659566063dSJacob Faibussowitsch PetscCall(PetscFree(globParents)); 116608633170SToby Isaac } 11679566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(parentSF, MPIU_INT, origChildIDs, newChildIDs,MPI_REPLACE)); 11689566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(parentSF, MPIU_INT, origChildIDs, newChildIDs,MPI_REPLACE)); 11699566063dSJacob Faibussowitsch PetscCall(ISGlobalToLocalMappingApplyBlock(renumbering,IS_GTOLM_MASK, newParentSize, newParents, NULL, newParents)); 117076bd3646SJed Brown if (PetscDefined(USE_DEBUG)) { 11714a54e071SToby Isaac PetscInt p; 11724a54e071SToby Isaac PetscBool valid = PETSC_TRUE; 11734a54e071SToby Isaac for (p = 0; p < newParentSize; ++p) { 117463a3b9bcSJacob Faibussowitsch if (newParents[p] < 0) {valid = PETSC_FALSE; PetscCall(PetscPrintf(PETSC_COMM_SELF, "Point %" PetscInt_FMT " not in overlap SF\n", p));} 11754a54e071SToby Isaac } 117628b400f6SJacob Faibussowitsch PetscCheck(valid,PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Invalid global to local map"); 11774a54e071SToby Isaac } 11789566063dSJacob Faibussowitsch PetscCall(PetscOptionsHasName(((PetscObject) dm)->options,((PetscObject) dm)->prefix, "-parents_view", &flg)); 1179a6f36705SMichael Lange if (flg) { 11809566063dSJacob Faibussowitsch PetscCall(PetscPrintf(comm, "Serial Parent Section: \n")); 11819566063dSJacob Faibussowitsch PetscCall(PetscSectionView(origParentSection, PETSC_VIEWER_STDOUT_(comm))); 11829566063dSJacob Faibussowitsch PetscCall(PetscPrintf(comm, "Parallel Parent Section: \n")); 11839566063dSJacob Faibussowitsch PetscCall(PetscSectionView(newParentSection, PETSC_VIEWER_STDOUT_(comm))); 11849566063dSJacob Faibussowitsch PetscCall(PetscSFView(parentSF, NULL)); 1185a6f36705SMichael Lange } 11869566063dSJacob Faibussowitsch PetscCall(DMPlexSetTree(dmParallel,newParentSection,newParents,newChildIDs)); 11879566063dSJacob Faibussowitsch PetscCall(PetscSectionDestroy(&newParentSection)); 11889566063dSJacob Faibussowitsch PetscCall(PetscFree2(newParents,newChildIDs)); 11899566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&parentSF)); 1190a6f36705SMichael Lange } 119115078cd4SMichael Lange pmesh->useAnchors = mesh->useAnchors; 1192a6f36705SMichael Lange PetscFunctionReturn(0); 1193a6f36705SMichael Lange } 11940df0e737SMichael Lange 119524cc2ca5SMatthew G. Knepley PETSC_UNUSED static PetscErrorCode DMPlexDistributeSF(DM dm, PetscSF migrationSF, DM dmParallel) 11964eca1733SMichael Lange { 11979852e123SBarry Smith PetscMPIInt rank, size; 11984eca1733SMichael Lange MPI_Comm comm; 11994eca1733SMichael Lange 12004eca1733SMichael Lange PetscFunctionBegin; 12014eca1733SMichael Lange PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 12020c86c063SLisandro Dalcin PetscValidHeaderSpecific(dmParallel, DM_CLASSID, 3); 12034eca1733SMichael Lange 12044eca1733SMichael Lange /* Create point SF for parallel mesh */ 12059566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DMPLEX_DistributeSF,dm,0,0,0)); 12069566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)dm, &comm)); 12079566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 12089566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 12094eca1733SMichael Lange { 12104eca1733SMichael Lange const PetscInt *leaves; 12114eca1733SMichael Lange PetscSFNode *remotePoints, *rowners, *lowners; 12124eca1733SMichael Lange PetscInt numRoots, numLeaves, numGhostPoints = 0, p, gp, *ghostPoints; 12134eca1733SMichael Lange PetscInt pStart, pEnd; 12144eca1733SMichael Lange 12159566063dSJacob Faibussowitsch PetscCall(DMPlexGetChart(dmParallel, &pStart, &pEnd)); 12169566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(migrationSF, &numRoots, &numLeaves, &leaves, NULL)); 12179566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(numRoots,&rowners,numLeaves,&lowners)); 12184eca1733SMichael Lange for (p=0; p<numRoots; p++) { 12194eca1733SMichael Lange rowners[p].rank = -1; 12204eca1733SMichael Lange rowners[p].index = -1; 12214eca1733SMichael Lange } 12229566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(migrationSF, MPIU_2INT, rowners, lowners,MPI_REPLACE)); 12239566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(migrationSF, MPIU_2INT, rowners, lowners,MPI_REPLACE)); 12244eca1733SMichael Lange for (p = 0; p < numLeaves; ++p) { 12254eca1733SMichael Lange if (lowners[p].rank < 0 || lowners[p].rank == rank) { /* Either put in a bid or we know we own it */ 12264eca1733SMichael Lange lowners[p].rank = rank; 12274eca1733SMichael Lange lowners[p].index = leaves ? leaves[p] : p; 12284eca1733SMichael Lange } else if (lowners[p].rank >= 0) { /* Point already claimed so flag so that MAXLOC does not listen to us */ 12294eca1733SMichael Lange lowners[p].rank = -2; 12304eca1733SMichael Lange lowners[p].index = -2; 12314eca1733SMichael Lange } 12324eca1733SMichael Lange } 12334eca1733SMichael Lange for (p=0; p<numRoots; p++) { /* Root must not participate in the rediction, flag so that MAXLOC does not use */ 12344eca1733SMichael Lange rowners[p].rank = -3; 12354eca1733SMichael Lange rowners[p].index = -3; 12364eca1733SMichael Lange } 12379566063dSJacob Faibussowitsch PetscCall(PetscSFReduceBegin(migrationSF, MPIU_2INT, lowners, rowners, MPI_MAXLOC)); 12389566063dSJacob Faibussowitsch PetscCall(PetscSFReduceEnd(migrationSF, MPIU_2INT, lowners, rowners, MPI_MAXLOC)); 12399566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(migrationSF, MPIU_2INT, rowners, lowners,MPI_REPLACE)); 12409566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(migrationSF, MPIU_2INT, rowners, lowners,MPI_REPLACE)); 12414eca1733SMichael Lange for (p = 0; p < numLeaves; ++p) { 12421dca8a05SBarry Smith PetscCheck(lowners[p].rank >= 0 && lowners[p].index >= 0,PETSC_COMM_SELF,PETSC_ERR_PLIB,"Cell partition corrupt: point not claimed"); 12434eca1733SMichael Lange if (lowners[p].rank != rank) ++numGhostPoints; 12444eca1733SMichael Lange } 12459566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(numGhostPoints, &ghostPoints)); 12469566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(numGhostPoints, &remotePoints)); 12474eca1733SMichael Lange for (p = 0, gp = 0; p < numLeaves; ++p) { 12484eca1733SMichael Lange if (lowners[p].rank != rank) { 12494eca1733SMichael Lange ghostPoints[gp] = leaves ? leaves[p] : p; 12504eca1733SMichael Lange remotePoints[gp].rank = lowners[p].rank; 12514eca1733SMichael Lange remotePoints[gp].index = lowners[p].index; 12524eca1733SMichael Lange ++gp; 12534eca1733SMichael Lange } 12544eca1733SMichael Lange } 12559566063dSJacob Faibussowitsch PetscCall(PetscFree2(rowners,lowners)); 12569566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph((dmParallel)->sf, pEnd - pStart, numGhostPoints, ghostPoints, PETSC_OWN_POINTER, remotePoints, PETSC_OWN_POINTER)); 12579566063dSJacob Faibussowitsch PetscCall(PetscSFSetFromOptions((dmParallel)->sf)); 12584eca1733SMichael Lange } 12591cf84007SMatthew G. Knepley { 12601cf84007SMatthew G. Knepley PetscBool useCone, useClosure, useAnchors; 12611cf84007SMatthew G. Knepley 12629566063dSJacob Faibussowitsch PetscCall(DMGetBasicAdjacency(dm, &useCone, &useClosure)); 12639566063dSJacob Faibussowitsch PetscCall(DMSetBasicAdjacency(dmParallel, useCone, useClosure)); 12649566063dSJacob Faibussowitsch PetscCall(DMPlexGetAdjacencyUseAnchors(dm, &useAnchors)); 12659566063dSJacob Faibussowitsch PetscCall(DMPlexSetAdjacencyUseAnchors(dmParallel, useAnchors)); 12661cf84007SMatthew G. Knepley } 12679566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DMPLEX_DistributeSF,dm,0,0,0)); 12684eca1733SMichael Lange PetscFunctionReturn(0); 12694eca1733SMichael Lange } 12704eca1733SMichael Lange 127198ba2d7fSLawrence Mitchell /*@ 127298ba2d7fSLawrence Mitchell DMPlexSetPartitionBalance - Should distribution of the DM attempt to balance the shared point partition? 127398ba2d7fSLawrence Mitchell 127498ba2d7fSLawrence Mitchell Input Parameters: 127598ba2d7fSLawrence Mitchell + dm - The DMPlex object 127698ba2d7fSLawrence Mitchell - flg - Balance the partition? 127798ba2d7fSLawrence Mitchell 127898ba2d7fSLawrence Mitchell Level: intermediate 127998ba2d7fSLawrence Mitchell 1280db781477SPatrick Sanan .seealso: `DMPlexDistribute()`, `DMPlexGetPartitionBalance()` 128198ba2d7fSLawrence Mitchell @*/ 128298ba2d7fSLawrence Mitchell PetscErrorCode DMPlexSetPartitionBalance(DM dm, PetscBool flg) 128398ba2d7fSLawrence Mitchell { 128498ba2d7fSLawrence Mitchell DM_Plex *mesh = (DM_Plex *)dm->data; 128598ba2d7fSLawrence Mitchell 128698ba2d7fSLawrence Mitchell PetscFunctionBegin; 128798ba2d7fSLawrence Mitchell mesh->partitionBalance = flg; 128898ba2d7fSLawrence Mitchell PetscFunctionReturn(0); 128998ba2d7fSLawrence Mitchell } 129098ba2d7fSLawrence Mitchell 129198ba2d7fSLawrence Mitchell /*@ 129298ba2d7fSLawrence Mitchell DMPlexGetPartitionBalance - Does distribution of the DM attempt to balance the shared point partition? 129398ba2d7fSLawrence Mitchell 129498ba2d7fSLawrence Mitchell Input Parameter: 1295a2b725a8SWilliam Gropp . dm - The DMPlex object 129698ba2d7fSLawrence Mitchell 129798ba2d7fSLawrence Mitchell Output Parameter: 1298a2b725a8SWilliam Gropp . flg - Balance the partition? 129998ba2d7fSLawrence Mitchell 130098ba2d7fSLawrence Mitchell Level: intermediate 130198ba2d7fSLawrence Mitchell 1302db781477SPatrick Sanan .seealso: `DMPlexDistribute()`, `DMPlexSetPartitionBalance()` 130398ba2d7fSLawrence Mitchell @*/ 130498ba2d7fSLawrence Mitchell PetscErrorCode DMPlexGetPartitionBalance(DM dm, PetscBool *flg) 130598ba2d7fSLawrence Mitchell { 130698ba2d7fSLawrence Mitchell DM_Plex *mesh = (DM_Plex *)dm->data; 130798ba2d7fSLawrence Mitchell 130898ba2d7fSLawrence Mitchell PetscFunctionBegin; 130998ba2d7fSLawrence Mitchell PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 1310534a8f05SLisandro Dalcin PetscValidBoolPointer(flg, 2); 131198ba2d7fSLawrence Mitchell *flg = mesh->partitionBalance; 131298ba2d7fSLawrence Mitchell PetscFunctionReturn(0); 131398ba2d7fSLawrence Mitchell } 131498ba2d7fSLawrence Mitchell 1315fc02256fSLawrence Mitchell typedef struct { 1316fc02256fSLawrence Mitchell PetscInt vote, rank, index; 1317fc02256fSLawrence Mitchell } Petsc3Int; 1318fc02256fSLawrence Mitchell 1319fc02256fSLawrence Mitchell /* MaxLoc, but carry a third piece of information around */ 13202eb0eadbSSatish Balay static void MPIAPI MaxLocCarry(void *in_, void *inout_, PetscMPIInt *len_, MPI_Datatype *dtype) 1321fc02256fSLawrence Mitchell { 1322fc02256fSLawrence Mitchell Petsc3Int *a = (Petsc3Int *)inout_; 1323fc02256fSLawrence Mitchell Petsc3Int *b = (Petsc3Int *)in_; 1324fc02256fSLawrence Mitchell PetscInt i, len = *len_; 1325fc02256fSLawrence Mitchell for (i = 0; i < len; i++) { 1326fc02256fSLawrence Mitchell if (a[i].vote < b[i].vote) { 1327fc02256fSLawrence Mitchell a[i].vote = b[i].vote; 1328fc02256fSLawrence Mitchell a[i].rank = b[i].rank; 1329fc02256fSLawrence Mitchell a[i].index = b[i].index; 1330fc02256fSLawrence Mitchell } else if (a[i].vote <= b[i].vote) { 1331fc02256fSLawrence Mitchell if (a[i].rank >= b[i].rank) { 1332fc02256fSLawrence Mitchell a[i].rank = b[i].rank; 1333fc02256fSLawrence Mitchell a[i].index = b[i].index; 1334fc02256fSLawrence Mitchell } 1335fc02256fSLawrence Mitchell } 1336fc02256fSLawrence Mitchell } 1337fc02256fSLawrence Mitchell } 1338fc02256fSLawrence Mitchell 1339f5bf2dbfSMichael Lange /*@C 1340a8c5bd36SStefano Zampini DMPlexCreatePointSF - Build a point SF from an SF describing a point migration 1341f5bf2dbfSMichael Lange 1342064ec1f3Sprj- Input Parameters: 1343f5bf2dbfSMichael Lange + dm - The source DMPlex object 1344f5bf2dbfSMichael Lange . migrationSF - The star forest that describes the parallel point remapping 1345d8d19677SJose E. Roman - ownership - Flag causing a vote to determine point ownership 1346f5bf2dbfSMichael Lange 1347f5bf2dbfSMichael Lange Output Parameter: 1348d8d19677SJose E. Roman . pointSF - The star forest describing the point overlap in the remapped DM 1349f5bf2dbfSMichael Lange 13503618482eSVaclav Hapla Notes: 13513618482eSVaclav Hapla Output pointSF is guaranteed to have the array of local indices (leaves) sorted. 13523618482eSVaclav Hapla 1353f5bf2dbfSMichael Lange Level: developer 1354f5bf2dbfSMichael Lange 1355db781477SPatrick Sanan .seealso: `DMPlexDistribute()`, `DMPlexDistributeOverlap()` 1356f5bf2dbfSMichael Lange @*/ 1357f5bf2dbfSMichael Lange PetscErrorCode DMPlexCreatePointSF(DM dm, PetscSF migrationSF, PetscBool ownership, PetscSF *pointSF) 1358f5bf2dbfSMichael Lange { 135923193802SMatthew G. Knepley PetscMPIInt rank, size; 13601627f6ccSMichael Lange PetscInt p, nroots, nleaves, idx, npointLeaves; 1361f5bf2dbfSMichael Lange PetscInt *pointLocal; 1362f5bf2dbfSMichael Lange const PetscInt *leaves; 1363f5bf2dbfSMichael Lange const PetscSFNode *roots; 1364f5bf2dbfSMichael Lange PetscSFNode *rootNodes, *leafNodes, *pointRemote; 136523193802SMatthew G. Knepley Vec shifts; 1366cae3e4f3SLawrence Mitchell const PetscInt numShifts = 13759; 136723193802SMatthew G. Knepley const PetscScalar *shift = NULL; 136823193802SMatthew G. Knepley const PetscBool shiftDebug = PETSC_FALSE; 136998ba2d7fSLawrence Mitchell PetscBool balance; 1370f5bf2dbfSMichael Lange 1371f5bf2dbfSMichael Lange PetscFunctionBegin; 1372f5bf2dbfSMichael Lange PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 13739566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject) dm), &rank)); 13749566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject) dm), &size)); 13759566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DMPLEX_CreatePointSF,dm,0,0,0)); 1376f5bf2dbfSMichael Lange 13779566063dSJacob Faibussowitsch PetscCall(DMPlexGetPartitionBalance(dm, &balance)); 13789566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(migrationSF, &nroots, &nleaves, &leaves, &roots)); 13799566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(nroots, &rootNodes, nleaves, &leafNodes)); 1380f5bf2dbfSMichael Lange if (ownership) { 1381fc02256fSLawrence Mitchell MPI_Op op; 1382fc02256fSLawrence Mitchell MPI_Datatype datatype; 1383fc02256fSLawrence Mitchell Petsc3Int *rootVote = NULL, *leafVote = NULL; 138423193802SMatthew G. Knepley /* If balancing, we compute a random cyclic shift of the rank for each remote point. That way, the max will evenly distribute among ranks. */ 138598ba2d7fSLawrence Mitchell if (balance) { 138623193802SMatthew G. Knepley PetscRandom r; 138723193802SMatthew G. Knepley 13889566063dSJacob Faibussowitsch PetscCall(PetscRandomCreate(PETSC_COMM_SELF, &r)); 13899566063dSJacob Faibussowitsch PetscCall(PetscRandomSetInterval(r, 0, 2467*size)); 13909566063dSJacob Faibussowitsch PetscCall(VecCreate(PETSC_COMM_SELF, &shifts)); 13919566063dSJacob Faibussowitsch PetscCall(VecSetSizes(shifts, numShifts, numShifts)); 13929566063dSJacob Faibussowitsch PetscCall(VecSetType(shifts, VECSTANDARD)); 13939566063dSJacob Faibussowitsch PetscCall(VecSetRandom(shifts, r)); 13949566063dSJacob Faibussowitsch PetscCall(PetscRandomDestroy(&r)); 13959566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(shifts, &shift)); 139623193802SMatthew G. Knepley } 139723193802SMatthew G. Knepley 13989566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nroots, &rootVote)); 13999566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nleaves, &leafVote)); 140023193802SMatthew G. Knepley /* Point ownership vote: Process with highest rank owns shared points */ 1401f5bf2dbfSMichael Lange for (p = 0; p < nleaves; ++p) { 140223193802SMatthew G. Knepley if (shiftDebug) { 140363a3b9bcSJacob Faibussowitsch PetscCall(PetscSynchronizedPrintf(PetscObjectComm((PetscObject) dm), "[%d] Point %" PetscInt_FMT " RemotePoint %" PetscInt_FMT " Shift %" PetscInt_FMT " MyRank %" PetscInt_FMT "\n", rank, leaves ? leaves[p] : p, roots[p].index, (PetscInt) PetscRealPart(shift[roots[p].index%numShifts]), (rank + (shift ? (PetscInt) PetscRealPart(shift[roots[p].index%numShifts]) : 0))%size)); 140423193802SMatthew G. Knepley } 1405f5bf2dbfSMichael Lange /* Either put in a bid or we know we own it */ 1406fc02256fSLawrence Mitchell leafVote[p].vote = (rank + (shift ? (PetscInt) PetscRealPart(shift[roots[p].index%numShifts]) : 0))%size; 1407fc02256fSLawrence Mitchell leafVote[p].rank = rank; 1408fc02256fSLawrence Mitchell leafVote[p].index = p; 1409f5bf2dbfSMichael Lange } 1410f5bf2dbfSMichael Lange for (p = 0; p < nroots; p++) { 14111627f6ccSMichael Lange /* Root must not participate in the reduction, flag so that MAXLOC does not use */ 1412fc02256fSLawrence Mitchell rootVote[p].vote = -3; 1413fc02256fSLawrence Mitchell rootVote[p].rank = -3; 1414fc02256fSLawrence Mitchell rootVote[p].index = -3; 1415f5bf2dbfSMichael Lange } 14169566063dSJacob Faibussowitsch PetscCallMPI(MPI_Type_contiguous(3, MPIU_INT, &datatype)); 14179566063dSJacob Faibussowitsch PetscCallMPI(MPI_Type_commit(&datatype)); 14189566063dSJacob Faibussowitsch PetscCallMPI(MPI_Op_create(&MaxLocCarry, 1, &op)); 14199566063dSJacob Faibussowitsch PetscCall(PetscSFReduceBegin(migrationSF, datatype, leafVote, rootVote, op)); 14209566063dSJacob Faibussowitsch PetscCall(PetscSFReduceEnd(migrationSF, datatype, leafVote, rootVote, op)); 14219566063dSJacob Faibussowitsch PetscCallMPI(MPI_Op_free(&op)); 14229566063dSJacob Faibussowitsch PetscCallMPI(MPI_Type_free(&datatype)); 1423c091126eSLawrence Mitchell for (p = 0; p < nroots; p++) { 1424fc02256fSLawrence Mitchell rootNodes[p].rank = rootVote[p].rank; 1425fc02256fSLawrence Mitchell rootNodes[p].index = rootVote[p].index; 1426c091126eSLawrence Mitchell } 14279566063dSJacob Faibussowitsch PetscCall(PetscFree(leafVote)); 14289566063dSJacob Faibussowitsch PetscCall(PetscFree(rootVote)); 1429f5bf2dbfSMichael Lange } else { 1430f5bf2dbfSMichael Lange for (p = 0; p < nroots; p++) { 1431f5bf2dbfSMichael Lange rootNodes[p].index = -1; 1432f5bf2dbfSMichael Lange rootNodes[p].rank = rank; 1433fc02256fSLawrence Mitchell } 1434f5bf2dbfSMichael Lange for (p = 0; p < nleaves; p++) { 1435f5bf2dbfSMichael Lange /* Write new local id into old location */ 1436f5bf2dbfSMichael Lange if (roots[p].rank == rank) { 14376462276dSToby Isaac rootNodes[roots[p].index].index = leaves ? leaves[p] : p; 1438f5bf2dbfSMichael Lange } 1439f5bf2dbfSMichael Lange } 1440f5bf2dbfSMichael Lange } 14419566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(migrationSF, MPIU_2INT, rootNodes, leafNodes,MPI_REPLACE)); 14429566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(migrationSF, MPIU_2INT, rootNodes, leafNodes,MPI_REPLACE)); 1443f5bf2dbfSMichael Lange 144423193802SMatthew G. Knepley for (npointLeaves = 0, p = 0; p < nleaves; p++) { 1445b0e1264bSMatthew G. Knepley if (leafNodes[p].rank != rank) npointLeaves++; 144623193802SMatthew G. Knepley } 14479566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(npointLeaves, &pointLocal)); 14489566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(npointLeaves, &pointRemote)); 1449f5bf2dbfSMichael Lange for (idx = 0, p = 0; p < nleaves; p++) { 1450b0e1264bSMatthew G. Knepley if (leafNodes[p].rank != rank) { 14513618482eSVaclav Hapla /* Note that pointLocal is automatically sorted as it is sublist of 0, ..., nleaves-1 */ 1452f5bf2dbfSMichael Lange pointLocal[idx] = p; 1453f5bf2dbfSMichael Lange pointRemote[idx] = leafNodes[p]; 1454f5bf2dbfSMichael Lange idx++; 1455f5bf2dbfSMichael Lange } 1456f5bf2dbfSMichael Lange } 145723193802SMatthew G. Knepley if (shift) { 14589566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(shifts, &shift)); 14599566063dSJacob Faibussowitsch PetscCall(VecDestroy(&shifts)); 146023193802SMatthew G. Knepley } 14619566063dSJacob Faibussowitsch if (shiftDebug) PetscCall(PetscSynchronizedFlush(PetscObjectComm((PetscObject) dm), PETSC_STDOUT)); 14629566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(PetscObjectComm((PetscObject) dm), pointSF)); 14639566063dSJacob Faibussowitsch PetscCall(PetscSFSetFromOptions(*pointSF)); 14649566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(*pointSF, nleaves, npointLeaves, pointLocal, PETSC_OWN_POINTER, pointRemote, PETSC_OWN_POINTER)); 14659566063dSJacob Faibussowitsch PetscCall(PetscFree2(rootNodes, leafNodes)); 14669566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DMPLEX_CreatePointSF,dm,0,0,0)); 1467f5bf2dbfSMichael Lange PetscFunctionReturn(0); 1468f5bf2dbfSMichael Lange } 1469f5bf2dbfSMichael Lange 147015078cd4SMichael Lange /*@C 147115078cd4SMichael Lange DMPlexMigrate - Migrates internal DM data over the supplied star forest 147215078cd4SMichael Lange 1473d083f849SBarry Smith Collective on dm 147483655b49SVáclav Hapla 1475064ec1f3Sprj- Input Parameters: 147615078cd4SMichael Lange + dm - The source DMPlex object 1477d8d19677SJose E. Roman - sf - The star forest communication context describing the migration pattern 147815078cd4SMichael Lange 147915078cd4SMichael Lange Output Parameter: 1480d8d19677SJose E. Roman . targetDM - The target DMPlex object 148115078cd4SMichael Lange 1482b9f40539SMichael Lange Level: intermediate 148315078cd4SMichael Lange 1484db781477SPatrick Sanan .seealso: `DMPlexDistribute()`, `DMPlexDistributeOverlap()` 148515078cd4SMichael Lange @*/ 1486b9f40539SMichael Lange PetscErrorCode DMPlexMigrate(DM dm, PetscSF sf, DM targetDM) 148715078cd4SMichael Lange { 1488b9f40539SMichael Lange MPI_Comm comm; 1489cc1750acSStefano Zampini PetscInt dim, cdim, nroots; 1490b9f40539SMichael Lange PetscSF sfPoint; 149115078cd4SMichael Lange ISLocalToGlobalMapping ltogMigration; 1492ac04eaf7SToby Isaac ISLocalToGlobalMapping ltogOriginal = NULL; 1493b9f40539SMichael Lange PetscBool flg; 149415078cd4SMichael Lange 149515078cd4SMichael Lange PetscFunctionBegin; 149615078cd4SMichael Lange PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 14979566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DMPLEX_Migrate, dm, 0, 0, 0)); 14989566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject) dm, &comm)); 14999566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 15009566063dSJacob Faibussowitsch PetscCall(DMSetDimension(targetDM, dim)); 15019566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDim(dm, &cdim)); 15029566063dSJacob Faibussowitsch PetscCall(DMSetCoordinateDim(targetDM, cdim)); 150315078cd4SMichael Lange 1504bfb0467fSMichael Lange /* Check for a one-to-all distribution pattern */ 15059566063dSJacob Faibussowitsch PetscCall(DMGetPointSF(dm, &sfPoint)); 15069566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(sfPoint, &nroots, NULL, NULL, NULL)); 1507bfb0467fSMichael Lange if (nroots >= 0) { 1508b9f40539SMichael Lange IS isOriginal; 1509ac04eaf7SToby Isaac PetscInt n, size, nleaves; 1510ac04eaf7SToby Isaac PetscInt *numbering_orig, *numbering_new; 1511367003a6SStefano Zampini 1512b9f40539SMichael Lange /* Get the original point numbering */ 15139566063dSJacob Faibussowitsch PetscCall(DMPlexCreatePointNumbering(dm, &isOriginal)); 15149566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingCreateIS(isOriginal, <ogOriginal)); 15159566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingGetSize(ltogOriginal, &size)); 15169566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingGetBlockIndices(ltogOriginal, (const PetscInt**)&numbering_orig)); 1517b9f40539SMichael Lange /* Convert to positive global numbers */ 1518b9f40539SMichael Lange for (n=0; n<size; n++) {if (numbering_orig[n] < 0) numbering_orig[n] = -(numbering_orig[n]+1);} 1519b9f40539SMichael Lange /* Derive the new local-to-global mapping from the old one */ 15209566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(sf, NULL, &nleaves, NULL, NULL)); 15219566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nleaves, &numbering_new)); 15229566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(sf, MPIU_INT, numbering_orig, numbering_new,MPI_REPLACE)); 15239566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(sf, MPIU_INT, numbering_orig, numbering_new,MPI_REPLACE)); 15249566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingCreate(comm, 1, nleaves, numbering_new, PETSC_OWN_POINTER, <ogMigration)); 15259566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingRestoreIndices(ltogOriginal, (const PetscInt**)&numbering_orig)); 15269566063dSJacob Faibussowitsch PetscCall(ISDestroy(&isOriginal)); 152715078cd4SMichael Lange } else { 1528bfb0467fSMichael Lange /* One-to-all distribution pattern: We can derive LToG from SF */ 15299566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingCreateSF(sf, 0, <ogMigration)); 153015078cd4SMichael Lange } 15319566063dSJacob Faibussowitsch PetscCall(PetscOptionsHasName(((PetscObject) dm)->options,((PetscObject) dm)->prefix, "-partition_view", &flg)); 1532b9f40539SMichael Lange if (flg) { 15339566063dSJacob Faibussowitsch PetscCall(PetscPrintf(comm, "Point renumbering for DM migration:\n")); 15349566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingView(ltogMigration, NULL)); 1535b9f40539SMichael Lange } 153615078cd4SMichael Lange /* Migrate DM data to target DM */ 15379566063dSJacob Faibussowitsch PetscCall(DMPlexDistributeCones(dm, sf, ltogOriginal, ltogMigration, targetDM)); 15389566063dSJacob Faibussowitsch PetscCall(DMPlexDistributeLabels(dm, sf, targetDM)); 15399566063dSJacob Faibussowitsch PetscCall(DMPlexDistributeCoordinates(dm, sf, targetDM)); 15409566063dSJacob Faibussowitsch PetscCall(DMPlexDistributeSetupTree(dm, sf, ltogOriginal, ltogMigration, targetDM)); 15419566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingDestroy(<ogOriginal)); 15429566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingDestroy(<ogMigration)); 15439566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DMPLEX_Migrate, dm, 0, 0, 0)); 154415078cd4SMichael Lange PetscFunctionReturn(0); 154515078cd4SMichael Lange } 154615078cd4SMichael Lange 15473b8f15a2SMatthew G. Knepley /*@C 154870034214SMatthew G. Knepley DMPlexDistribute - Distributes the mesh and any associated sections. 154970034214SMatthew G. Knepley 1550d083f849SBarry Smith Collective on dm 155170034214SMatthew G. Knepley 1552064ec1f3Sprj- Input Parameters: 155370034214SMatthew G. Knepley + dm - The original DMPlex object 155470034214SMatthew G. Knepley - overlap - The overlap of partitions, 0 is the default 155570034214SMatthew G. Knepley 1556064ec1f3Sprj- Output Parameters: 1557f4ae5380SJed Brown + sf - The PetscSF used for point distribution, or NULL if not needed 1558f4ae5380SJed Brown - dmParallel - The distributed DMPlex object 155970034214SMatthew G. Knepley 1560f4ae5380SJed Brown Note: If the mesh was not distributed, the output dmParallel will be NULL. 156170034214SMatthew G. Knepley 1562b0441da4SMatthew G. Knepley The user can control the definition of adjacency for the mesh using DMSetAdjacency(). They should choose the combination appropriate for the function 156370034214SMatthew G. Knepley representation on the mesh. 156470034214SMatthew G. Knepley 156570034214SMatthew G. Knepley Level: intermediate 156670034214SMatthew G. Knepley 1567db781477SPatrick Sanan .seealso: `DMPlexCreate()`, `DMSetAdjacency()`, `DMPlexGetOverlap()` 156870034214SMatthew G. Knepley @*/ 156980cf41d5SMatthew G. Knepley PetscErrorCode DMPlexDistribute(DM dm, PetscInt overlap, PetscSF *sf, DM *dmParallel) 157070034214SMatthew G. Knepley { 157170034214SMatthew G. Knepley MPI_Comm comm; 157215078cd4SMichael Lange PetscPartitioner partitioner; 1573f8987ae8SMichael Lange IS cellPart; 1574f8987ae8SMichael Lange PetscSection cellPartSection; 1575cf86098cSMatthew G. Knepley DM dmCoord; 1576f8987ae8SMichael Lange DMLabel lblPartition, lblMigration; 1577874ddda9SLisandro Dalcin PetscSF sfMigration, sfStratified, sfPoint; 157898ba2d7fSLawrence Mitchell PetscBool flg, balance; 1579874ddda9SLisandro Dalcin PetscMPIInt rank, size; 158070034214SMatthew G. Knepley 158170034214SMatthew G. Knepley PetscFunctionBegin; 158270034214SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 1583d5c515a1SMatthew G. Knepley PetscValidLogicalCollectiveInt(dm, overlap, 2); 1584d5c515a1SMatthew G. Knepley if (sf) PetscValidPointer(sf,3); 1585d5c515a1SMatthew G. Knepley PetscValidPointer(dmParallel,4); 158670034214SMatthew G. Knepley 15870c86c063SLisandro Dalcin if (sf) *sf = NULL; 15880c86c063SLisandro Dalcin *dmParallel = NULL; 15899566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)dm,&comm)); 15909566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 15919566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 15920c86c063SLisandro Dalcin if (size == 1) PetscFunctionReturn(0); 159370034214SMatthew G. Knepley 15949566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DMPLEX_Distribute,dm,0,0,0)); 159515078cd4SMichael Lange /* Create cell partition */ 15969566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DMPLEX_Partition,dm,0,0,0)); 15979566063dSJacob Faibussowitsch PetscCall(PetscSectionCreate(comm, &cellPartSection)); 15989566063dSJacob Faibussowitsch PetscCall(DMPlexGetPartitioner(dm, &partitioner)); 15999566063dSJacob Faibussowitsch PetscCall(PetscPartitionerDMPlexPartition(partitioner, dm, NULL, cellPartSection, &cellPart)); 16009566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DMPLEX_PartSelf,dm,0,0,0)); 1601f8987ae8SMichael Lange { 1602f8987ae8SMichael Lange /* Convert partition to DMLabel */ 1603825f8a23SLisandro Dalcin IS is; 1604825f8a23SLisandro Dalcin PetscHSetI ht; 1605f8987ae8SMichael Lange const PetscInt *points; 16068e330a33SStefano Zampini PetscInt *iranks; 16078e330a33SStefano Zampini PetscInt pStart, pEnd, proc, npoints, poff = 0, nranks; 1608825f8a23SLisandro Dalcin 16099566063dSJacob Faibussowitsch PetscCall(DMLabelCreate(PETSC_COMM_SELF, "Point Partition", &lblPartition)); 1610825f8a23SLisandro Dalcin /* Preallocate strata */ 16119566063dSJacob Faibussowitsch PetscCall(PetscHSetICreate(&ht)); 16129566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(cellPartSection, &pStart, &pEnd)); 1613825f8a23SLisandro Dalcin for (proc = pStart; proc < pEnd; proc++) { 16149566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(cellPartSection, proc, &npoints)); 16159566063dSJacob Faibussowitsch if (npoints) PetscCall(PetscHSetIAdd(ht, proc)); 1616825f8a23SLisandro Dalcin } 16179566063dSJacob Faibussowitsch PetscCall(PetscHSetIGetSize(ht, &nranks)); 16189566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nranks, &iranks)); 16199566063dSJacob Faibussowitsch PetscCall(PetscHSetIGetElems(ht, &poff, iranks)); 16209566063dSJacob Faibussowitsch PetscCall(PetscHSetIDestroy(&ht)); 16219566063dSJacob Faibussowitsch PetscCall(DMLabelAddStrata(lblPartition, nranks, iranks)); 16229566063dSJacob Faibussowitsch PetscCall(PetscFree(iranks)); 1623825f8a23SLisandro Dalcin /* Inline DMPlexPartitionLabelClosure() */ 16249566063dSJacob Faibussowitsch PetscCall(ISGetIndices(cellPart, &points)); 16259566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(cellPartSection, &pStart, &pEnd)); 1626f8987ae8SMichael Lange for (proc = pStart; proc < pEnd; proc++) { 16279566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(cellPartSection, proc, &npoints)); 1628825f8a23SLisandro Dalcin if (!npoints) continue; 16299566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(cellPartSection, proc, &poff)); 16309566063dSJacob Faibussowitsch PetscCall(DMPlexClosurePoints_Private(dm, npoints, points+poff, &is)); 16319566063dSJacob Faibussowitsch PetscCall(DMLabelSetStratumIS(lblPartition, proc, is)); 16329566063dSJacob Faibussowitsch PetscCall(ISDestroy(&is)); 1633f8987ae8SMichael Lange } 16349566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(cellPart, &points)); 1635f8987ae8SMichael Lange } 16369566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DMPLEX_PartSelf,dm,0,0,0)); 16376e203dd9SStefano Zampini 16389566063dSJacob Faibussowitsch PetscCall(DMLabelCreate(PETSC_COMM_SELF, "Point migration", &lblMigration)); 16399566063dSJacob Faibussowitsch PetscCall(DMPlexPartitionLabelInvert(dm, lblPartition, NULL, lblMigration)); 16409566063dSJacob Faibussowitsch PetscCall(DMPlexPartitionLabelCreateSF(dm, lblMigration, &sfMigration)); 16419566063dSJacob Faibussowitsch PetscCall(DMPlexStratifyMigrationSF(dm, sfMigration, &sfStratified)); 16429566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&sfMigration)); 164343f7d02bSMichael Lange sfMigration = sfStratified; 16449566063dSJacob Faibussowitsch PetscCall(PetscSFSetUp(sfMigration)); 16459566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DMPLEX_Partition,dm,0,0,0)); 16469566063dSJacob Faibussowitsch PetscCall(PetscOptionsHasName(((PetscObject) dm)->options,((PetscObject) dm)->prefix, "-partition_view", &flg)); 164770034214SMatthew G. Knepley if (flg) { 16489566063dSJacob Faibussowitsch PetscCall(DMLabelView(lblPartition, PETSC_VIEWER_STDOUT_(comm))); 16499566063dSJacob Faibussowitsch PetscCall(PetscSFView(sfMigration, PETSC_VIEWER_STDOUT_(comm))); 165070034214SMatthew G. Knepley } 1651f8987ae8SMichael Lange 165215078cd4SMichael Lange /* Create non-overlapping parallel DM and migrate internal data */ 16539566063dSJacob Faibussowitsch PetscCall(DMPlexCreate(comm, dmParallel)); 16549566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject) *dmParallel, "Parallel Mesh")); 16559566063dSJacob Faibussowitsch PetscCall(DMPlexMigrate(dm, sfMigration, *dmParallel)); 165670034214SMatthew G. Knepley 1657a157612eSMichael Lange /* Build the point SF without overlap */ 16589566063dSJacob Faibussowitsch PetscCall(DMPlexGetPartitionBalance(dm, &balance)); 16599566063dSJacob Faibussowitsch PetscCall(DMPlexSetPartitionBalance(*dmParallel, balance)); 16609566063dSJacob Faibussowitsch PetscCall(DMPlexCreatePointSF(*dmParallel, sfMigration, PETSC_TRUE, &sfPoint)); 16619566063dSJacob Faibussowitsch PetscCall(DMSetPointSF(*dmParallel, sfPoint)); 16629566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDM(*dmParallel, &dmCoord)); 16639566063dSJacob Faibussowitsch if (dmCoord) PetscCall(DMSetPointSF(dmCoord, sfPoint)); 16649566063dSJacob Faibussowitsch if (flg) PetscCall(PetscSFView(sfPoint, NULL)); 166570034214SMatthew G. Knepley 1666a157612eSMichael Lange if (overlap > 0) { 166715078cd4SMichael Lange DM dmOverlap; 166857f290daSMatthew G. Knepley PetscInt nroots, nleaves, noldleaves, l; 166957f290daSMatthew G. Knepley const PetscInt *oldLeaves; 167057f290daSMatthew G. Knepley PetscSFNode *newRemote, *permRemote; 167115078cd4SMichael Lange const PetscSFNode *oldRemote; 167215078cd4SMichael Lange PetscSF sfOverlap, sfOverlapPoint; 1673524e35f8SStefano Zampini 1674a157612eSMichael Lange /* Add the partition overlap to the distributed DM */ 16759566063dSJacob Faibussowitsch PetscCall(DMPlexDistributeOverlap(*dmParallel, overlap, &sfOverlap, &dmOverlap)); 16769566063dSJacob Faibussowitsch PetscCall(DMDestroy(dmParallel)); 1677a157612eSMichael Lange *dmParallel = dmOverlap; 1678c389ea9fSToby Isaac if (flg) { 16799566063dSJacob Faibussowitsch PetscCall(PetscPrintf(comm, "Overlap Migration SF:\n")); 16809566063dSJacob Faibussowitsch PetscCall(PetscSFView(sfOverlap, NULL)); 1681c389ea9fSToby Isaac } 168243331d4aSMichael Lange 1683f8987ae8SMichael Lange /* Re-map the migration SF to establish the full migration pattern */ 16849566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(sfMigration, &nroots, &noldleaves, &oldLeaves, &oldRemote)); 16859566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(sfOverlap, NULL, &nleaves, NULL, NULL)); 16869566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nleaves, &newRemote)); 168757f290daSMatthew G. Knepley /* oldRemote: original root point mapping to original leaf point 168857f290daSMatthew G. Knepley newRemote: original leaf point mapping to overlapped leaf point */ 168957f290daSMatthew G. Knepley if (oldLeaves) { 169073e69a6aSMatthew G. Knepley /* After stratification, the migration remotes may not be in root (canonical) order, so we reorder using the leaf numbering */ 16919566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(noldleaves, &permRemote)); 169257f290daSMatthew G. Knepley for (l = 0; l < noldleaves; ++l) permRemote[oldLeaves[l]] = oldRemote[l]; 169357f290daSMatthew G. Knepley oldRemote = permRemote; 169457f290daSMatthew G. Knepley } 16959566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(sfOverlap, MPIU_2INT, oldRemote, newRemote,MPI_REPLACE)); 16969566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(sfOverlap, MPIU_2INT, oldRemote, newRemote,MPI_REPLACE)); 16979566063dSJacob Faibussowitsch if (oldLeaves) PetscCall(PetscFree(oldRemote)); 16989566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(comm, &sfOverlapPoint)); 16999566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(sfOverlapPoint, nroots, nleaves, NULL, PETSC_OWN_POINTER, newRemote, PETSC_OWN_POINTER)); 17009566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&sfOverlap)); 17019566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&sfMigration)); 170215078cd4SMichael Lange sfMigration = sfOverlapPoint; 1703c389ea9fSToby Isaac } 1704bf5244c7SMatthew G. Knepley /* Cleanup Partition */ 17059566063dSJacob Faibussowitsch PetscCall(DMLabelDestroy(&lblPartition)); 17069566063dSJacob Faibussowitsch PetscCall(DMLabelDestroy(&lblMigration)); 17079566063dSJacob Faibussowitsch PetscCall(PetscSectionDestroy(&cellPartSection)); 17089566063dSJacob Faibussowitsch PetscCall(ISDestroy(&cellPart)); 170945480ffeSMatthew G. Knepley /* Copy discretization */ 17109566063dSJacob Faibussowitsch PetscCall(DMCopyDisc(dm, *dmParallel)); 171166fe0bfeSMatthew G. Knepley /* Create sfNatural */ 171266fe0bfeSMatthew G. Knepley if (dm->useNatural) { 171366fe0bfeSMatthew G. Knepley PetscSection section; 171466fe0bfeSMatthew G. Knepley 17159566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, §ion)); 17169566063dSJacob Faibussowitsch PetscCall(DMPlexCreateGlobalToNaturalSF(*dmParallel, section, sfMigration, &(*dmParallel)->sfNatural)); 17179566063dSJacob Faibussowitsch PetscCall(DMSetUseNatural(*dmParallel, PETSC_TRUE)); 171866fe0bfeSMatthew G. Knepley } 1719*5de52c6dSVaclav Hapla PetscCall(DMPlexCopy_Internal(dm, PETSC_TRUE, PETSC_FALSE, *dmParallel)); 1720721cbd76SMatthew G. Knepley /* Cleanup */ 1721f8987ae8SMichael Lange if (sf) {*sf = sfMigration;} 17229566063dSJacob Faibussowitsch else PetscCall(PetscSFDestroy(&sfMigration)); 17239566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&sfPoint)); 17249566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DMPLEX_Distribute,dm,0,0,0)); 172570034214SMatthew G. Knepley PetscFunctionReturn(0); 172670034214SMatthew G. Knepley } 1727a157612eSMichael Lange 1728a157612eSMichael Lange /*@C 172924cc2ca5SMatthew G. Knepley DMPlexDistributeOverlap - Add partition overlap to a distributed non-overlapping DM. 1730a157612eSMichael Lange 1731d083f849SBarry Smith Collective on dm 1732a157612eSMichael Lange 1733064ec1f3Sprj- Input Parameters: 1734064ec1f3Sprj- + dm - The non-overlapping distributed DMPlex object 173557fe9a49SVaclav Hapla - overlap - The overlap of partitions (the same on all ranks) 1736a157612eSMichael Lange 1737064ec1f3Sprj- Output Parameters: 1738a157612eSMichael Lange + sf - The PetscSF used for point distribution 1739a157612eSMichael Lange - dmOverlap - The overlapping distributed DMPlex object, or NULL 1740a157612eSMichael Lange 1741dccdeccaSVaclav Hapla Notes: 1742dccdeccaSVaclav Hapla If the mesh was not distributed, the return value is NULL. 1743a157612eSMichael Lange 1744b0441da4SMatthew G. Knepley The user can control the definition of adjacency for the mesh using DMSetAdjacency(). They should choose the combination appropriate for the function 1745a157612eSMichael Lange representation on the mesh. 1746a157612eSMichael Lange 1747dccdeccaSVaclav Hapla Level: advanced 1748a157612eSMichael Lange 1749db781477SPatrick Sanan .seealso: `DMPlexCreate()`, `DMSetAdjacency()`, `DMPlexDistribute()`, `DMPlexCreateOverlapLabel()`, `DMPlexGetOverlap()` 1750a157612eSMichael Lange @*/ 1751b9f40539SMichael Lange PetscErrorCode DMPlexDistributeOverlap(DM dm, PetscInt overlap, PetscSF *sf, DM *dmOverlap) 1752a157612eSMichael Lange { 1753a157612eSMichael Lange MPI_Comm comm; 17543567eaeeSMatthew G. Knepley PetscMPIInt size, rank; 1755a157612eSMichael Lange PetscSection rootSection, leafSection; 1756a157612eSMichael Lange IS rootrank, leafrank; 1757cf86098cSMatthew G. Knepley DM dmCoord; 1758a9f1d5b2SMichael Lange DMLabel lblOverlap; 1759f5bf2dbfSMichael Lange PetscSF sfOverlap, sfStratified, sfPoint; 1760a157612eSMichael Lange 1761a157612eSMichael Lange PetscFunctionBegin; 1762a157612eSMichael Lange PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 176357fe9a49SVaclav Hapla PetscValidLogicalCollectiveInt(dm, overlap, 2); 1764a157612eSMichael Lange if (sf) PetscValidPointer(sf, 3); 1765a157612eSMichael Lange PetscValidPointer(dmOverlap, 4); 1766a157612eSMichael Lange 17670c86c063SLisandro Dalcin if (sf) *sf = NULL; 17680c86c063SLisandro Dalcin *dmOverlap = NULL; 17699566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)dm,&comm)); 17709566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 17719566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 17720c86c063SLisandro Dalcin if (size == 1) PetscFunctionReturn(0); 1773a157612eSMichael Lange 17749566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DMPLEX_DistributeOverlap, dm, 0, 0, 0)); 1775a157612eSMichael Lange /* Compute point overlap with neighbouring processes on the distributed DM */ 17769566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DMPLEX_Partition,dm,0,0,0)); 17779566063dSJacob Faibussowitsch PetscCall(PetscSectionCreate(comm, &rootSection)); 17789566063dSJacob Faibussowitsch PetscCall(PetscSectionCreate(comm, &leafSection)); 17799566063dSJacob Faibussowitsch PetscCall(DMPlexDistributeOwnership(dm, rootSection, &rootrank, leafSection, &leafrank)); 17809566063dSJacob Faibussowitsch PetscCall(DMPlexCreateOverlapLabel(dm, overlap, rootSection, rootrank, leafSection, leafrank, &lblOverlap)); 1781a9f1d5b2SMichael Lange /* Convert overlap label to stratified migration SF */ 17829566063dSJacob Faibussowitsch PetscCall(DMPlexPartitionLabelCreateSF(dm, lblOverlap, &sfOverlap)); 17839566063dSJacob Faibussowitsch PetscCall(DMPlexStratifyMigrationSF(dm, sfOverlap, &sfStratified)); 17849566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&sfOverlap)); 1785a9f1d5b2SMichael Lange sfOverlap = sfStratified; 17869566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject) sfOverlap, "Overlap SF")); 17879566063dSJacob Faibussowitsch PetscCall(PetscSFSetFromOptions(sfOverlap)); 1788a9f1d5b2SMichael Lange 17899566063dSJacob Faibussowitsch PetscCall(PetscSectionDestroy(&rootSection)); 17909566063dSJacob Faibussowitsch PetscCall(PetscSectionDestroy(&leafSection)); 17919566063dSJacob Faibussowitsch PetscCall(ISDestroy(&rootrank)); 17929566063dSJacob Faibussowitsch PetscCall(ISDestroy(&leafrank)); 17939566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DMPLEX_Partition,dm,0,0,0)); 1794a157612eSMichael Lange 1795a157612eSMichael Lange /* Build the overlapping DM */ 17969566063dSJacob Faibussowitsch PetscCall(DMPlexCreate(comm, dmOverlap)); 17979566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject) *dmOverlap, "Parallel Mesh")); 17989566063dSJacob Faibussowitsch PetscCall(DMPlexMigrate(dm, sfOverlap, *dmOverlap)); 1799cb54e036SVaclav Hapla /* Store the overlap in the new DM */ 1800cb54e036SVaclav Hapla ((DM_Plex*)(*dmOverlap)->data)->overlap = overlap + ((DM_Plex*)dm->data)->overlap; 1801f5bf2dbfSMichael Lange /* Build the new point SF */ 18029566063dSJacob Faibussowitsch PetscCall(DMPlexCreatePointSF(*dmOverlap, sfOverlap, PETSC_FALSE, &sfPoint)); 18039566063dSJacob Faibussowitsch PetscCall(DMSetPointSF(*dmOverlap, sfPoint)); 18049566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDM(*dmOverlap, &dmCoord)); 18059566063dSJacob Faibussowitsch if (dmCoord) PetscCall(DMSetPointSF(dmCoord, sfPoint)); 18069566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&sfPoint)); 1807a157612eSMichael Lange /* Cleanup overlap partition */ 18089566063dSJacob Faibussowitsch PetscCall(DMLabelDestroy(&lblOverlap)); 1809a9f1d5b2SMichael Lange if (sf) *sf = sfOverlap; 18109566063dSJacob Faibussowitsch else PetscCall(PetscSFDestroy(&sfOverlap)); 18119566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DMPLEX_DistributeOverlap, dm, 0, 0, 0)); 1812a157612eSMichael Lange PetscFunctionReturn(0); 1813a157612eSMichael Lange } 18146462276dSToby Isaac 1815cb54e036SVaclav Hapla PetscErrorCode DMPlexGetOverlap_Plex(DM dm, PetscInt *overlap) 1816cb54e036SVaclav Hapla { 1817cb54e036SVaclav Hapla DM_Plex *mesh = (DM_Plex*) dm->data; 1818cb54e036SVaclav Hapla 1819cb54e036SVaclav Hapla PetscFunctionBegin; 1820cb54e036SVaclav Hapla *overlap = mesh->overlap; 1821cb54e036SVaclav Hapla PetscFunctionReturn(0); 1822cb54e036SVaclav Hapla } 1823cb54e036SVaclav Hapla 1824cb54e036SVaclav Hapla /*@ 1825cb54e036SVaclav Hapla DMPlexGetOverlap - Get the DMPlex partition overlap. 1826cb54e036SVaclav Hapla 1827cb54e036SVaclav Hapla Not collective 1828cb54e036SVaclav Hapla 1829cb54e036SVaclav Hapla Input Parameter: 1830cb54e036SVaclav Hapla . dm - The DM 1831cb54e036SVaclav Hapla 1832064ec1f3Sprj- Output Parameter: 1833cb54e036SVaclav Hapla . overlap - The overlap of this DM 1834cb54e036SVaclav Hapla 1835cb54e036SVaclav Hapla Level: intermediate 1836cb54e036SVaclav Hapla 1837db781477SPatrick Sanan .seealso: `DMPlexDistribute()`, `DMPlexDistributeOverlap()`, `DMPlexCreateOverlapLabel()` 1838cb54e036SVaclav Hapla @*/ 1839cb54e036SVaclav Hapla PetscErrorCode DMPlexGetOverlap(DM dm, PetscInt *overlap) 1840cb54e036SVaclav Hapla { 1841cb54e036SVaclav Hapla PetscFunctionBegin; 1842cb54e036SVaclav Hapla PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 1843cac4c232SBarry Smith PetscUseMethod(dm,"DMPlexGetOverlap_C",(DM,PetscInt*),(dm,overlap)); 1844cb54e036SVaclav Hapla PetscFunctionReturn(0); 1845cb54e036SVaclav Hapla } 1846cb54e036SVaclav Hapla 1847e600fa54SMatthew G. Knepley PetscErrorCode DMPlexDistributeSetDefault_Plex(DM dm, PetscBool dist) 1848e600fa54SMatthew G. Knepley { 1849e600fa54SMatthew G. Knepley DM_Plex *mesh = (DM_Plex *) dm->data; 1850e600fa54SMatthew G. Knepley 1851e600fa54SMatthew G. Knepley PetscFunctionBegin; 1852e600fa54SMatthew G. Knepley mesh->distDefault = dist; 1853e600fa54SMatthew G. Knepley PetscFunctionReturn(0); 1854e600fa54SMatthew G. Knepley } 1855e600fa54SMatthew G. Knepley 1856e600fa54SMatthew G. Knepley /*@ 1857e600fa54SMatthew G. Knepley DMPlexDistributeSetDefault - Set flag indicating whether the DM should be distributed by default 1858e600fa54SMatthew G. Knepley 1859e600fa54SMatthew G. Knepley Logically collective 1860e600fa54SMatthew G. Knepley 1861e600fa54SMatthew G. Knepley Input Parameters: 1862e600fa54SMatthew G. Knepley + dm - The DM 1863e600fa54SMatthew G. Knepley - dist - Flag for distribution 1864e600fa54SMatthew G. Knepley 1865e600fa54SMatthew G. Knepley Level: intermediate 1866e600fa54SMatthew G. Knepley 1867db781477SPatrick Sanan .seealso: `DMDistributeGetDefault()`, `DMPlexDistribute()` 1868e600fa54SMatthew G. Knepley @*/ 1869e600fa54SMatthew G. Knepley PetscErrorCode DMPlexDistributeSetDefault(DM dm, PetscBool dist) 1870e600fa54SMatthew G. Knepley { 1871e600fa54SMatthew G. Knepley PetscFunctionBegin; 1872e600fa54SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 1873e600fa54SMatthew G. Knepley PetscValidLogicalCollectiveBool(dm, dist, 2); 1874cac4c232SBarry Smith PetscTryMethod(dm,"DMPlexDistributeSetDefault_C",(DM,PetscBool),(dm,dist)); 1875e600fa54SMatthew G. Knepley PetscFunctionReturn(0); 1876e600fa54SMatthew G. Knepley } 1877e600fa54SMatthew G. Knepley 1878e600fa54SMatthew G. Knepley PetscErrorCode DMPlexDistributeGetDefault_Plex(DM dm, PetscBool *dist) 1879e600fa54SMatthew G. Knepley { 1880e600fa54SMatthew G. Knepley DM_Plex *mesh = (DM_Plex *) dm->data; 1881e600fa54SMatthew G. Knepley 1882e600fa54SMatthew G. Knepley PetscFunctionBegin; 1883e600fa54SMatthew G. Knepley *dist = mesh->distDefault; 1884e600fa54SMatthew G. Knepley PetscFunctionReturn(0); 1885e600fa54SMatthew G. Knepley } 1886e600fa54SMatthew G. Knepley 1887e600fa54SMatthew G. Knepley /*@ 1888e600fa54SMatthew G. Knepley DMPlexDistributeGetDefault - Get flag indicating whether the DM should be distributed by default 1889e600fa54SMatthew G. Knepley 1890e600fa54SMatthew G. Knepley Not collective 1891e600fa54SMatthew G. Knepley 1892e600fa54SMatthew G. Knepley Input Parameter: 1893e600fa54SMatthew G. Knepley . dm - The DM 1894e600fa54SMatthew G. Knepley 1895e600fa54SMatthew G. Knepley Output Parameter: 1896e600fa54SMatthew G. Knepley . dist - Flag for distribution 1897e600fa54SMatthew G. Knepley 1898e600fa54SMatthew G. Knepley Level: intermediate 1899e600fa54SMatthew G. Knepley 1900db781477SPatrick Sanan .seealso: `DMDistributeSetDefault()`, `DMPlexDistribute()` 1901e600fa54SMatthew G. Knepley @*/ 1902e600fa54SMatthew G. Knepley PetscErrorCode DMPlexDistributeGetDefault(DM dm, PetscBool *dist) 1903e600fa54SMatthew G. Knepley { 1904e600fa54SMatthew G. Knepley PetscFunctionBegin; 1905e600fa54SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 1906e600fa54SMatthew G. Knepley PetscValidBoolPointer(dist, 2); 1907cac4c232SBarry Smith PetscUseMethod(dm,"DMPlexDistributeGetDefault_C",(DM,PetscBool*),(dm,dist)); 1908e600fa54SMatthew G. Knepley PetscFunctionReturn(0); 1909e600fa54SMatthew G. Knepley } 1910e600fa54SMatthew G. Knepley 19116462276dSToby Isaac /*@C 19126462276dSToby Isaac DMPlexGetGatherDM - Get a copy of the DMPlex that gathers all points on the 19136462276dSToby Isaac root process of the original's communicator. 19146462276dSToby Isaac 1915d083f849SBarry Smith Collective on dm 191683655b49SVáclav Hapla 1917064ec1f3Sprj- Input Parameter: 19186462276dSToby Isaac . dm - the original DMPlex object 19196462276dSToby Isaac 19206462276dSToby Isaac Output Parameters: 1921a13df41bSStefano Zampini + sf - the PetscSF used for point distribution (optional) 1922a13df41bSStefano Zampini - gatherMesh - the gathered DM object, or NULL 19236462276dSToby Isaac 19246462276dSToby Isaac Level: intermediate 19256462276dSToby Isaac 1926db781477SPatrick Sanan .seealso: `DMPlexDistribute()`, `DMPlexGetRedundantDM()` 19276462276dSToby Isaac @*/ 1928a13df41bSStefano Zampini PetscErrorCode DMPlexGetGatherDM(DM dm, PetscSF *sf, DM *gatherMesh) 19296462276dSToby Isaac { 19306462276dSToby Isaac MPI_Comm comm; 19316462276dSToby Isaac PetscMPIInt size; 19326462276dSToby Isaac PetscPartitioner oldPart, gatherPart; 19336462276dSToby Isaac 19346462276dSToby Isaac PetscFunctionBegin; 19356462276dSToby Isaac PetscValidHeaderSpecific(dm,DM_CLASSID,1); 1936064a246eSJacob Faibussowitsch PetscValidPointer(gatherMesh,3); 19370c86c063SLisandro Dalcin *gatherMesh = NULL; 1938a13df41bSStefano Zampini if (sf) *sf = NULL; 19396462276dSToby Isaac comm = PetscObjectComm((PetscObject)dm); 19409566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm,&size)); 19416462276dSToby Isaac if (size == 1) PetscFunctionReturn(0); 19429566063dSJacob Faibussowitsch PetscCall(DMPlexGetPartitioner(dm,&oldPart)); 19439566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)oldPart)); 19449566063dSJacob Faibussowitsch PetscCall(PetscPartitionerCreate(comm,&gatherPart)); 19459566063dSJacob Faibussowitsch PetscCall(PetscPartitionerSetType(gatherPart,PETSCPARTITIONERGATHER)); 19469566063dSJacob Faibussowitsch PetscCall(DMPlexSetPartitioner(dm,gatherPart)); 19479566063dSJacob Faibussowitsch PetscCall(DMPlexDistribute(dm,0,sf,gatherMesh)); 1948a13df41bSStefano Zampini 19499566063dSJacob Faibussowitsch PetscCall(DMPlexSetPartitioner(dm,oldPart)); 19509566063dSJacob Faibussowitsch PetscCall(PetscPartitionerDestroy(&gatherPart)); 19519566063dSJacob Faibussowitsch PetscCall(PetscPartitionerDestroy(&oldPart)); 19526462276dSToby Isaac PetscFunctionReturn(0); 19536462276dSToby Isaac } 19546462276dSToby Isaac 19556462276dSToby Isaac /*@C 19566462276dSToby Isaac DMPlexGetRedundantDM - Get a copy of the DMPlex that is completely copied on each process. 19576462276dSToby Isaac 1958d083f849SBarry Smith Collective on dm 195983655b49SVáclav Hapla 1960064ec1f3Sprj- Input Parameter: 19616462276dSToby Isaac . dm - the original DMPlex object 19626462276dSToby Isaac 19636462276dSToby Isaac Output Parameters: 1964a13df41bSStefano Zampini + sf - the PetscSF used for point distribution (optional) 1965a13df41bSStefano Zampini - redundantMesh - the redundant DM object, or NULL 19666462276dSToby Isaac 19676462276dSToby Isaac Level: intermediate 19686462276dSToby Isaac 1969db781477SPatrick Sanan .seealso: `DMPlexDistribute()`, `DMPlexGetGatherDM()` 19706462276dSToby Isaac @*/ 1971a13df41bSStefano Zampini PetscErrorCode DMPlexGetRedundantDM(DM dm, PetscSF *sf, DM *redundantMesh) 19726462276dSToby Isaac { 19736462276dSToby Isaac MPI_Comm comm; 19746462276dSToby Isaac PetscMPIInt size, rank; 19756462276dSToby Isaac PetscInt pStart, pEnd, p; 19766462276dSToby Isaac PetscInt numPoints = -1; 1977a13df41bSStefano Zampini PetscSF migrationSF, sfPoint, gatherSF; 19786462276dSToby Isaac DM gatherDM, dmCoord; 19796462276dSToby Isaac PetscSFNode *points; 19806462276dSToby Isaac 19816462276dSToby Isaac PetscFunctionBegin; 19826462276dSToby Isaac PetscValidHeaderSpecific(dm,DM_CLASSID,1); 1983064a246eSJacob Faibussowitsch PetscValidPointer(redundantMesh,3); 19840c86c063SLisandro Dalcin *redundantMesh = NULL; 19856462276dSToby Isaac comm = PetscObjectComm((PetscObject)dm); 19869566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm,&size)); 198768dbc166SMatthew G. Knepley if (size == 1) { 19889566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject) dm)); 198968dbc166SMatthew G. Knepley *redundantMesh = dm; 1990a13df41bSStefano Zampini if (sf) *sf = NULL; 199168dbc166SMatthew G. Knepley PetscFunctionReturn(0); 199268dbc166SMatthew G. Knepley } 19939566063dSJacob Faibussowitsch PetscCall(DMPlexGetGatherDM(dm,&gatherSF,&gatherDM)); 19946462276dSToby Isaac if (!gatherDM) PetscFunctionReturn(0); 19959566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm,&rank)); 19969566063dSJacob Faibussowitsch PetscCall(DMPlexGetChart(gatherDM,&pStart,&pEnd)); 19976462276dSToby Isaac numPoints = pEnd - pStart; 19989566063dSJacob Faibussowitsch PetscCallMPI(MPI_Bcast(&numPoints,1,MPIU_INT,0,comm)); 19999566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(numPoints,&points)); 20009566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(comm,&migrationSF)); 20016462276dSToby Isaac for (p = 0; p < numPoints; p++) { 20026462276dSToby Isaac points[p].index = p; 20036462276dSToby Isaac points[p].rank = 0; 20046462276dSToby Isaac } 20059566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(migrationSF,pEnd-pStart,numPoints,NULL,PETSC_OWN_POINTER,points,PETSC_OWN_POINTER)); 20069566063dSJacob Faibussowitsch PetscCall(DMPlexCreate(comm, redundantMesh)); 20079566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject) *redundantMesh, "Redundant Mesh")); 20089566063dSJacob Faibussowitsch PetscCall(DMPlexMigrate(gatherDM, migrationSF, *redundantMesh)); 20099566063dSJacob Faibussowitsch PetscCall(DMPlexCreatePointSF(*redundantMesh, migrationSF, PETSC_FALSE, &sfPoint)); 20109566063dSJacob Faibussowitsch PetscCall(DMSetPointSF(*redundantMesh, sfPoint)); 20119566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDM(*redundantMesh, &dmCoord)); 20129566063dSJacob Faibussowitsch if (dmCoord) PetscCall(DMSetPointSF(dmCoord, sfPoint)); 20139566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&sfPoint)); 2014a13df41bSStefano Zampini if (sf) { 2015a13df41bSStefano Zampini PetscSF tsf; 2016a13df41bSStefano Zampini 20179566063dSJacob Faibussowitsch PetscCall(PetscSFCompose(gatherSF,migrationSF,&tsf)); 20189566063dSJacob Faibussowitsch PetscCall(DMPlexStratifyMigrationSF(dm, tsf, sf)); 20199566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&tsf)); 2020a13df41bSStefano Zampini } 20219566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&migrationSF)); 20229566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&gatherSF)); 20239566063dSJacob Faibussowitsch PetscCall(DMDestroy(&gatherDM)); 20249566063dSJacob Faibussowitsch PetscCall(DMCopyDisc(dm, *redundantMesh)); 2025*5de52c6dSVaclav Hapla PetscCall(DMPlexCopy_Internal(dm, PETSC_TRUE, PETSC_FALSE, *redundantMesh)); 20266462276dSToby Isaac PetscFunctionReturn(0); 20276462276dSToby Isaac } 20285fa78c88SVaclav Hapla 20295fa78c88SVaclav Hapla /*@ 20305fa78c88SVaclav Hapla DMPlexIsDistributed - Find out whether this DM is distributed, i.e. more than one rank owns some points. 20315fa78c88SVaclav Hapla 20325fa78c88SVaclav Hapla Collective 20335fa78c88SVaclav Hapla 20345fa78c88SVaclav Hapla Input Parameter: 20355fa78c88SVaclav Hapla . dm - The DM object 20365fa78c88SVaclav Hapla 20375fa78c88SVaclav Hapla Output Parameter: 20385fa78c88SVaclav Hapla . distributed - Flag whether the DM is distributed 20395fa78c88SVaclav Hapla 20405fa78c88SVaclav Hapla Level: intermediate 20415fa78c88SVaclav Hapla 20425fa78c88SVaclav Hapla Notes: 20435fa78c88SVaclav Hapla This currently finds out whether at least two ranks have any DAG points. 20445fa78c88SVaclav Hapla This involves MPI_Allreduce() with one integer. 20455fa78c88SVaclav Hapla The result is currently not stashed so every call to this routine involves this global communication. 20465fa78c88SVaclav Hapla 2047db781477SPatrick Sanan .seealso: `DMPlexDistribute()`, `DMPlexGetOverlap()`, `DMPlexIsInterpolated()` 20485fa78c88SVaclav Hapla @*/ 20495fa78c88SVaclav Hapla PetscErrorCode DMPlexIsDistributed(DM dm, PetscBool *distributed) 20505fa78c88SVaclav Hapla { 20515fa78c88SVaclav Hapla PetscInt pStart, pEnd, count; 20525fa78c88SVaclav Hapla MPI_Comm comm; 205335d70e31SStefano Zampini PetscMPIInt size; 20545fa78c88SVaclav Hapla 20555fa78c88SVaclav Hapla PetscFunctionBegin; 20565fa78c88SVaclav Hapla PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 2057dadcf809SJacob Faibussowitsch PetscValidBoolPointer(distributed,2); 20589566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)dm,&comm)); 20599566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm,&size)); 206035d70e31SStefano Zampini if (size == 1) { *distributed = PETSC_FALSE; PetscFunctionReturn(0); } 20619566063dSJacob Faibussowitsch PetscCall(DMPlexGetChart(dm, &pStart, &pEnd)); 206235d70e31SStefano Zampini count = (pEnd - pStart) > 0 ? 1 : 0; 20639566063dSJacob Faibussowitsch PetscCallMPI(MPI_Allreduce(MPI_IN_PLACE, &count, 1, MPIU_INT, MPI_SUM, comm)); 20645fa78c88SVaclav Hapla *distributed = count > 1 ? PETSC_TRUE : PETSC_FALSE; 20655fa78c88SVaclav Hapla PetscFunctionReturn(0); 20665fa78c88SVaclav Hapla } 2067