1af0996ceSBarry Smith #include <petsc/private/dmpleximpl.h> /*I "petscdmplex.h" I*/ 2c58f1c22SToby Isaac #include <petsc/private/dmlabelimpl.h> /*I "petscdmlabel.h" I*/ 370034214SMatthew G. Knepley 43c1f0c11SLawrence Mitchell /*@C 53c1f0c11SLawrence Mitchell DMPlexSetAdjacencyUser - Define adjacency in the mesh using a user-provided callback 63c1f0c11SLawrence Mitchell 73c1f0c11SLawrence Mitchell Input Parameters: 83c1f0c11SLawrence Mitchell + dm - The DM object 93c1f0c11SLawrence Mitchell . user - The user callback, may be NULL (to clear the callback) 103c1f0c11SLawrence Mitchell - ctx - context for callback evaluation, may be NULL 113c1f0c11SLawrence Mitchell 123c1f0c11SLawrence Mitchell Level: advanced 133c1f0c11SLawrence Mitchell 143c1f0c11SLawrence Mitchell Notes: 153c1f0c11SLawrence Mitchell The caller of DMPlexGetAdjacency may need to arrange that a large enough array is available for the adjacency. 163c1f0c11SLawrence Mitchell 173c1f0c11SLawrence Mitchell Any setting here overrides other configuration of DMPlex adjacency determination. 183c1f0c11SLawrence Mitchell 19b0441da4SMatthew G. Knepley .seealso: DMSetAdjacency(), DMPlexDistribute(), DMPlexPreallocateOperator(), DMPlexGetAdjacency(), DMPlexGetAdjacencyUser() 203c1f0c11SLawrence Mitchell @*/ 213c1f0c11SLawrence Mitchell PetscErrorCode DMPlexSetAdjacencyUser(DM dm,PetscErrorCode (*user)(DM,PetscInt,PetscInt*,PetscInt[],void*),void *ctx) 223c1f0c11SLawrence Mitchell { 233c1f0c11SLawrence Mitchell DM_Plex *mesh = (DM_Plex *)dm->data; 243c1f0c11SLawrence Mitchell 253c1f0c11SLawrence Mitchell PetscFunctionBegin; 263c1f0c11SLawrence Mitchell PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 273c1f0c11SLawrence Mitchell mesh->useradjacency = user; 283c1f0c11SLawrence Mitchell mesh->useradjacencyctx = ctx; 293c1f0c11SLawrence Mitchell PetscFunctionReturn(0); 303c1f0c11SLawrence Mitchell } 313c1f0c11SLawrence Mitchell 323c1f0c11SLawrence Mitchell /*@C 333c1f0c11SLawrence Mitchell DMPlexGetAdjacencyUser - get the user-defined adjacency callback 343c1f0c11SLawrence Mitchell 353c1f0c11SLawrence Mitchell Input Parameter: 363c1f0c11SLawrence Mitchell . dm - The DM object 373c1f0c11SLawrence Mitchell 383c1f0c11SLawrence Mitchell Output Parameters: 393c1f0c11SLawrence Mitchell - user - The user callback 403c1f0c11SLawrence Mitchell - ctx - context for callback evaluation 413c1f0c11SLawrence Mitchell 423c1f0c11SLawrence Mitchell Level: advanced 433c1f0c11SLawrence Mitchell 44b0441da4SMatthew G. Knepley .seealso: DMSetAdjacency(), DMPlexDistribute(), DMPlexPreallocateOperator(), DMPlexGetAdjacency(), DMPlexSetAdjacencyUser() 453c1f0c11SLawrence Mitchell @*/ 463c1f0c11SLawrence Mitchell PetscErrorCode DMPlexGetAdjacencyUser(DM dm, PetscErrorCode (**user)(DM,PetscInt,PetscInt*,PetscInt[],void*), void **ctx) 473c1f0c11SLawrence Mitchell { 483c1f0c11SLawrence Mitchell DM_Plex *mesh = (DM_Plex *)dm->data; 493c1f0c11SLawrence Mitchell 503c1f0c11SLawrence Mitchell PetscFunctionBegin; 513c1f0c11SLawrence Mitchell PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 523c1f0c11SLawrence Mitchell if (user) *user = mesh->useradjacency; 533c1f0c11SLawrence Mitchell if (ctx) *ctx = mesh->useradjacencyctx; 543c1f0c11SLawrence Mitchell PetscFunctionReturn(0); 553c1f0c11SLawrence Mitchell } 563c1f0c11SLawrence Mitchell 5770034214SMatthew G. Knepley /*@ 58a17985deSToby Isaac DMPlexSetAdjacencyUseAnchors - Define adjacency in the mesh using the point-to-point constraints. 598b0b4c70SToby Isaac 608b0b4c70SToby Isaac Input Parameters: 618b0b4c70SToby Isaac + dm - The DM object 625b317d89SToby Isaac - useAnchors - Flag to use the constraints. If PETSC_TRUE, then constrained points are omitted from DMPlexGetAdjacency(), and their anchor points appear in their place. 638b0b4c70SToby Isaac 648b0b4c70SToby Isaac Level: intermediate 658b0b4c70SToby Isaac 66b0441da4SMatthew G. Knepley .seealso: DMGetAdjacency(), DMSetAdjacency(), DMPlexDistribute(), DMPlexPreallocateOperator(), DMPlexSetAnchors() 678b0b4c70SToby Isaac @*/ 685b317d89SToby Isaac PetscErrorCode DMPlexSetAdjacencyUseAnchors(DM dm, PetscBool useAnchors) 698b0b4c70SToby Isaac { 708b0b4c70SToby Isaac DM_Plex *mesh = (DM_Plex *) dm->data; 718b0b4c70SToby Isaac 728b0b4c70SToby Isaac PetscFunctionBegin; 738b0b4c70SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 745b317d89SToby Isaac mesh->useAnchors = useAnchors; 758b0b4c70SToby Isaac PetscFunctionReturn(0); 768b0b4c70SToby Isaac } 778b0b4c70SToby Isaac 788b0b4c70SToby Isaac /*@ 79a17985deSToby Isaac DMPlexGetAdjacencyUseAnchors - Query whether adjacency in the mesh uses the point-to-point constraints. 808b0b4c70SToby Isaac 818b0b4c70SToby Isaac Input Parameter: 828b0b4c70SToby Isaac . dm - The DM object 838b0b4c70SToby Isaac 848b0b4c70SToby Isaac Output Parameter: 855b317d89SToby Isaac . useAnchors - Flag to use the closure. If PETSC_TRUE, then constrained points are omitted from DMPlexGetAdjacency(), and their anchor points appear in their place. 868b0b4c70SToby Isaac 878b0b4c70SToby Isaac Level: intermediate 888b0b4c70SToby Isaac 89b0441da4SMatthew G. Knepley .seealso: DMPlexSetAdjacencyUseAnchors(), DMSetAdjacency(), DMGetAdjacency(), DMPlexDistribute(), DMPlexPreallocateOperator(), DMPlexSetAnchors() 908b0b4c70SToby Isaac @*/ 915b317d89SToby Isaac PetscErrorCode DMPlexGetAdjacencyUseAnchors(DM dm, PetscBool *useAnchors) 928b0b4c70SToby Isaac { 938b0b4c70SToby Isaac DM_Plex *mesh = (DM_Plex *) dm->data; 948b0b4c70SToby Isaac 958b0b4c70SToby Isaac PetscFunctionBegin; 968b0b4c70SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 975b317d89SToby Isaac PetscValidIntPointer(useAnchors, 2); 985b317d89SToby Isaac *useAnchors = mesh->useAnchors; 998b0b4c70SToby Isaac PetscFunctionReturn(0); 1008b0b4c70SToby Isaac } 1018b0b4c70SToby Isaac 10270034214SMatthew G. Knepley static PetscErrorCode DMPlexGetAdjacency_Cone_Internal(DM dm, PetscInt p, PetscInt *adjSize, PetscInt adj[]) 10370034214SMatthew G. Knepley { 10470034214SMatthew G. Knepley const PetscInt *cone = NULL; 10570034214SMatthew G. Knepley PetscInt numAdj = 0, maxAdjSize = *adjSize, coneSize, c; 10670034214SMatthew G. Knepley PetscErrorCode ierr; 10770034214SMatthew G. Knepley 10870034214SMatthew G. Knepley PetscFunctionBeginHot; 10970034214SMatthew G. Knepley ierr = DMPlexGetConeSize(dm, p, &coneSize);CHKERRQ(ierr); 11070034214SMatthew G. Knepley ierr = DMPlexGetCone(dm, p, &cone);CHKERRQ(ierr); 1114b6b44bdSMatthew G. Knepley for (c = 0; c <= coneSize; ++c) { 1124b6b44bdSMatthew G. Knepley const PetscInt point = !c ? p : cone[c-1]; 11370034214SMatthew G. Knepley const PetscInt *support = NULL; 11470034214SMatthew G. Knepley PetscInt supportSize, s, q; 11570034214SMatthew G. Knepley 1164b6b44bdSMatthew G. Knepley ierr = DMPlexGetSupportSize(dm, point, &supportSize);CHKERRQ(ierr); 1174b6b44bdSMatthew G. Knepley ierr = DMPlexGetSupport(dm, point, &support);CHKERRQ(ierr); 11870034214SMatthew G. Knepley for (s = 0; s < supportSize; ++s) { 119527e7439SSatish Balay for (q = 0; q < numAdj || ((void)(adj[numAdj++] = support[s]),0); ++q) { 12070034214SMatthew G. Knepley if (support[s] == adj[q]) break; 12170034214SMatthew G. Knepley } 12270034214SMatthew G. Knepley if (numAdj > maxAdjSize) SETERRQ1(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid mesh exceeded adjacency allocation (%D)", maxAdjSize); 12370034214SMatthew G. Knepley } 12470034214SMatthew G. Knepley } 12570034214SMatthew G. Knepley *adjSize = numAdj; 12670034214SMatthew G. Knepley PetscFunctionReturn(0); 12770034214SMatthew G. Knepley } 12870034214SMatthew G. Knepley 12970034214SMatthew G. Knepley static PetscErrorCode DMPlexGetAdjacency_Support_Internal(DM dm, PetscInt p, PetscInt *adjSize, PetscInt adj[]) 13070034214SMatthew G. Knepley { 13170034214SMatthew G. Knepley const PetscInt *support = NULL; 13270034214SMatthew G. Knepley PetscInt numAdj = 0, maxAdjSize = *adjSize, supportSize, s; 13370034214SMatthew G. Knepley PetscErrorCode ierr; 13470034214SMatthew G. Knepley 13570034214SMatthew G. Knepley PetscFunctionBeginHot; 13670034214SMatthew G. Knepley ierr = DMPlexGetSupportSize(dm, p, &supportSize);CHKERRQ(ierr); 13770034214SMatthew G. Knepley ierr = DMPlexGetSupport(dm, p, &support);CHKERRQ(ierr); 1384b6b44bdSMatthew G. Knepley for (s = 0; s <= supportSize; ++s) { 1394b6b44bdSMatthew G. Knepley const PetscInt point = !s ? p : support[s-1]; 14070034214SMatthew G. Knepley const PetscInt *cone = NULL; 14170034214SMatthew G. Knepley PetscInt coneSize, c, q; 14270034214SMatthew G. Knepley 1434b6b44bdSMatthew G. Knepley ierr = DMPlexGetConeSize(dm, point, &coneSize);CHKERRQ(ierr); 1444b6b44bdSMatthew G. Knepley ierr = DMPlexGetCone(dm, point, &cone);CHKERRQ(ierr); 14570034214SMatthew G. Knepley for (c = 0; c < coneSize; ++c) { 146527e7439SSatish Balay for (q = 0; q < numAdj || ((void)(adj[numAdj++] = cone[c]),0); ++q) { 14770034214SMatthew G. Knepley if (cone[c] == adj[q]) break; 14870034214SMatthew G. Knepley } 14970034214SMatthew G. Knepley if (numAdj > maxAdjSize) SETERRQ1(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid mesh exceeded adjacency allocation (%D)", maxAdjSize); 15070034214SMatthew G. Knepley } 15170034214SMatthew G. Knepley } 15270034214SMatthew G. Knepley *adjSize = numAdj; 15370034214SMatthew G. Knepley PetscFunctionReturn(0); 15470034214SMatthew G. Knepley } 15570034214SMatthew G. Knepley 15670034214SMatthew G. Knepley static PetscErrorCode DMPlexGetAdjacency_Transitive_Internal(DM dm, PetscInt p, PetscBool useClosure, PetscInt *adjSize, PetscInt adj[]) 15770034214SMatthew G. Knepley { 15870034214SMatthew G. Knepley PetscInt *star = NULL; 15970034214SMatthew G. Knepley PetscInt numAdj = 0, maxAdjSize = *adjSize, starSize, s; 16070034214SMatthew G. Knepley PetscErrorCode ierr; 16170034214SMatthew G. Knepley 16270034214SMatthew G. Knepley PetscFunctionBeginHot; 16370034214SMatthew G. Knepley ierr = DMPlexGetTransitiveClosure(dm, p, useClosure, &starSize, &star);CHKERRQ(ierr); 16470034214SMatthew G. Knepley for (s = 0; s < starSize*2; s += 2) { 16570034214SMatthew G. Knepley const PetscInt *closure = NULL; 16670034214SMatthew G. Knepley PetscInt closureSize, c, q; 16770034214SMatthew G. Knepley 16870034214SMatthew G. Knepley ierr = DMPlexGetTransitiveClosure(dm, star[s], (PetscBool)!useClosure, &closureSize, (PetscInt**) &closure);CHKERRQ(ierr); 16970034214SMatthew G. Knepley for (c = 0; c < closureSize*2; c += 2) { 170527e7439SSatish Balay for (q = 0; q < numAdj || ((void)(adj[numAdj++] = closure[c]),0); ++q) { 17170034214SMatthew G. Knepley if (closure[c] == adj[q]) break; 17270034214SMatthew G. Knepley } 17370034214SMatthew G. Knepley if (numAdj > maxAdjSize) SETERRQ1(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid mesh exceeded adjacency allocation (%D)", maxAdjSize); 17470034214SMatthew G. Knepley } 17570034214SMatthew G. Knepley ierr = DMPlexRestoreTransitiveClosure(dm, star[s], (PetscBool)!useClosure, &closureSize, (PetscInt**) &closure);CHKERRQ(ierr); 17670034214SMatthew G. Knepley } 17770034214SMatthew G. Knepley ierr = DMPlexRestoreTransitiveClosure(dm, p, useClosure, &starSize, &star);CHKERRQ(ierr); 17870034214SMatthew G. Knepley *adjSize = numAdj; 17970034214SMatthew G. Knepley PetscFunctionReturn(0); 18070034214SMatthew G. Knepley } 18170034214SMatthew G. Knepley 1825b317d89SToby Isaac PetscErrorCode DMPlexGetAdjacency_Internal(DM dm, PetscInt p, PetscBool useCone, PetscBool useTransitiveClosure, PetscBool useAnchors, PetscInt *adjSize, PetscInt *adj[]) 18370034214SMatthew G. Knepley { 18479bad331SMatthew G. Knepley static PetscInt asiz = 0; 1858b0b4c70SToby Isaac PetscInt maxAnchors = 1; 1868b0b4c70SToby Isaac PetscInt aStart = -1, aEnd = -1; 1878b0b4c70SToby Isaac PetscInt maxAdjSize; 1888b0b4c70SToby Isaac PetscSection aSec = NULL; 1898b0b4c70SToby Isaac IS aIS = NULL; 1908b0b4c70SToby Isaac const PetscInt *anchors; 1913c1f0c11SLawrence Mitchell DM_Plex *mesh = (DM_Plex *)dm->data; 19270034214SMatthew G. Knepley PetscErrorCode ierr; 19370034214SMatthew G. Knepley 19470034214SMatthew G. Knepley PetscFunctionBeginHot; 1955b317d89SToby Isaac if (useAnchors) { 196a17985deSToby Isaac ierr = DMPlexGetAnchors(dm,&aSec,&aIS);CHKERRQ(ierr); 1978b0b4c70SToby Isaac if (aSec) { 1988b0b4c70SToby Isaac ierr = PetscSectionGetMaxDof(aSec,&maxAnchors);CHKERRQ(ierr); 19924c766afSToby Isaac maxAnchors = PetscMax(1,maxAnchors); 2008b0b4c70SToby Isaac ierr = PetscSectionGetChart(aSec,&aStart,&aEnd);CHKERRQ(ierr); 2018b0b4c70SToby Isaac ierr = ISGetIndices(aIS,&anchors);CHKERRQ(ierr); 2028b0b4c70SToby Isaac } 2038b0b4c70SToby Isaac } 20479bad331SMatthew G. Knepley if (!*adj) { 20524c766afSToby Isaac PetscInt depth, coneSeries, supportSeries, maxC, maxS, pStart, pEnd; 20679bad331SMatthew G. Knepley 20724c766afSToby Isaac ierr = DMPlexGetChart(dm, &pStart,&pEnd);CHKERRQ(ierr); 20879bad331SMatthew G. Knepley ierr = DMPlexGetDepth(dm, &depth);CHKERRQ(ierr); 20924c766afSToby Isaac ierr = DMPlexGetMaxSizes(dm, &maxC, &maxS);CHKERRQ(ierr); 21024c766afSToby Isaac coneSeries = (maxC > 1) ? ((PetscPowInt(maxC,depth+1)-1)/(maxC-1)) : depth+1; 21124c766afSToby Isaac supportSeries = (maxS > 1) ? ((PetscPowInt(maxS,depth+1)-1)/(maxS-1)) : depth+1; 21224c766afSToby Isaac asiz = PetscMax(PetscPowInt(maxS,depth)*coneSeries,PetscPowInt(maxC,depth)*supportSeries); 2138b0b4c70SToby Isaac asiz *= maxAnchors; 21424c766afSToby Isaac asiz = PetscMin(asiz,pEnd-pStart); 21579bad331SMatthew G. Knepley ierr = PetscMalloc1(asiz,adj);CHKERRQ(ierr); 21679bad331SMatthew G. Knepley } 21779bad331SMatthew G. Knepley if (*adjSize < 0) *adjSize = asiz; 2188b0b4c70SToby Isaac maxAdjSize = *adjSize; 2193c1f0c11SLawrence Mitchell if (mesh->useradjacency) { 22062f17a49SStefano Zampini ierr = (*mesh->useradjacency)(dm, p, adjSize, *adj, mesh->useradjacencyctx);CHKERRQ(ierr); 2213c1f0c11SLawrence Mitchell } else if (useTransitiveClosure) { 22279bad331SMatthew G. Knepley ierr = DMPlexGetAdjacency_Transitive_Internal(dm, p, useCone, adjSize, *adj);CHKERRQ(ierr); 22370034214SMatthew G. Knepley } else if (useCone) { 22479bad331SMatthew G. Knepley ierr = DMPlexGetAdjacency_Cone_Internal(dm, p, adjSize, *adj);CHKERRQ(ierr); 22570034214SMatthew G. Knepley } else { 22679bad331SMatthew G. Knepley ierr = DMPlexGetAdjacency_Support_Internal(dm, p, adjSize, *adj);CHKERRQ(ierr); 22770034214SMatthew G. Knepley } 2285b317d89SToby Isaac if (useAnchors && aSec) { 2298b0b4c70SToby Isaac PetscInt origSize = *adjSize; 2308b0b4c70SToby Isaac PetscInt numAdj = origSize; 2318b0b4c70SToby Isaac PetscInt i = 0, j; 2328b0b4c70SToby Isaac PetscInt *orig = *adj; 2338b0b4c70SToby Isaac 2348b0b4c70SToby Isaac while (i < origSize) { 2358b0b4c70SToby Isaac PetscInt p = orig[i]; 2368b0b4c70SToby Isaac PetscInt aDof = 0; 2378b0b4c70SToby Isaac 2388b0b4c70SToby Isaac if (p >= aStart && p < aEnd) { 2398b0b4c70SToby Isaac ierr = PetscSectionGetDof(aSec,p,&aDof);CHKERRQ(ierr); 2408b0b4c70SToby Isaac } 2418b0b4c70SToby Isaac if (aDof) { 2428b0b4c70SToby Isaac PetscInt aOff; 2438b0b4c70SToby Isaac PetscInt s, q; 2448b0b4c70SToby Isaac 2458b0b4c70SToby Isaac for (j = i + 1; j < numAdj; j++) { 2468b0b4c70SToby Isaac orig[j - 1] = orig[j]; 2478b0b4c70SToby Isaac } 2488b0b4c70SToby Isaac origSize--; 2498b0b4c70SToby Isaac numAdj--; 2508b0b4c70SToby Isaac ierr = PetscSectionGetOffset(aSec,p,&aOff);CHKERRQ(ierr); 2518b0b4c70SToby Isaac for (s = 0; s < aDof; ++s) { 252527e7439SSatish Balay for (q = 0; q < numAdj || ((void)(orig[numAdj++] = anchors[aOff+s]),0); ++q) { 2538b0b4c70SToby Isaac if (anchors[aOff+s] == orig[q]) break; 2548b0b4c70SToby Isaac } 2558b0b4c70SToby Isaac if (numAdj > maxAdjSize) SETERRQ1(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid mesh exceeded adjacency allocation (%D)", maxAdjSize); 2568b0b4c70SToby Isaac } 2578b0b4c70SToby Isaac } 2588b0b4c70SToby Isaac else { 2598b0b4c70SToby Isaac i++; 2608b0b4c70SToby Isaac } 2618b0b4c70SToby Isaac } 2628b0b4c70SToby Isaac *adjSize = numAdj; 2638b0b4c70SToby Isaac ierr = ISRestoreIndices(aIS,&anchors);CHKERRQ(ierr); 2648b0b4c70SToby Isaac } 26570034214SMatthew G. Knepley PetscFunctionReturn(0); 26670034214SMatthew G. Knepley } 26770034214SMatthew G. Knepley 26870034214SMatthew G. Knepley /*@ 26970034214SMatthew G. Knepley DMPlexGetAdjacency - Return all points adjacent to the given point 27070034214SMatthew G. Knepley 27170034214SMatthew G. Knepley Input Parameters: 27270034214SMatthew G. Knepley + dm - The DM object 27370034214SMatthew G. Knepley . p - The point 27470034214SMatthew G. Knepley . adjSize - The maximum size of adj if it is non-NULL, or PETSC_DETERMINE 27570034214SMatthew G. Knepley - adj - Either NULL so that the array is allocated, or an existing array with size adjSize 27670034214SMatthew G. Knepley 27770034214SMatthew G. Knepley Output Parameters: 27870034214SMatthew G. Knepley + adjSize - The number of adjacent points 27970034214SMatthew G. Knepley - adj - The adjacent points 28070034214SMatthew G. Knepley 28170034214SMatthew G. Knepley Level: advanced 28270034214SMatthew G. Knepley 28395452b02SPatrick Sanan Notes: 28495452b02SPatrick Sanan The user must PetscFree the adj array if it was not passed in. 28570034214SMatthew G. Knepley 286b0441da4SMatthew G. Knepley .seealso: DMSetAdjacency(), DMPlexDistribute(), DMCreateMatrix(), DMPlexPreallocateOperator() 28770034214SMatthew G. Knepley @*/ 28870034214SMatthew G. Knepley PetscErrorCode DMPlexGetAdjacency(DM dm, PetscInt p, PetscInt *adjSize, PetscInt *adj[]) 28970034214SMatthew G. Knepley { 2901cf84007SMatthew G. Knepley PetscBool useCone, useClosure, useAnchors; 29170034214SMatthew G. Knepley PetscErrorCode ierr; 29270034214SMatthew G. Knepley 29370034214SMatthew G. Knepley PetscFunctionBeginHot; 29470034214SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 29570034214SMatthew G. Knepley PetscValidPointer(adjSize,3); 29670034214SMatthew G. Knepley PetscValidPointer(adj,4); 297b0441da4SMatthew G. Knepley ierr = DMGetBasicAdjacency(dm, &useCone, &useClosure);CHKERRQ(ierr); 2981cf84007SMatthew G. Knepley ierr = DMPlexGetAdjacencyUseAnchors(dm, &useAnchors);CHKERRQ(ierr); 2991cf84007SMatthew G. Knepley ierr = DMPlexGetAdjacency_Internal(dm, p, useCone, useClosure, useAnchors, adjSize, adj);CHKERRQ(ierr); 30070034214SMatthew G. Knepley PetscFunctionReturn(0); 30170034214SMatthew G. Knepley } 30208633170SToby Isaac 303b0a623aaSMatthew G. Knepley /*@ 304b0a623aaSMatthew G. Knepley DMPlexCreateTwoSidedProcessSF - Create an SF which just has process connectivity 305b0a623aaSMatthew G. Knepley 306d083f849SBarry Smith Collective on dm 307b0a623aaSMatthew G. Knepley 308b0a623aaSMatthew G. Knepley Input Parameters: 309b0a623aaSMatthew G. Knepley + dm - The DM 310b0a623aaSMatthew G. Knepley - sfPoint - The PetscSF which encodes point connectivity 311b0a623aaSMatthew G. Knepley 312b0a623aaSMatthew G. Knepley Output Parameters: 313b0a623aaSMatthew G. Knepley + processRanks - A list of process neighbors, or NULL 314b0a623aaSMatthew G. Knepley - sfProcess - An SF encoding the two-sided process connectivity, or NULL 315b0a623aaSMatthew G. Knepley 316b0a623aaSMatthew G. Knepley Level: developer 317b0a623aaSMatthew G. Knepley 318b0a623aaSMatthew G. Knepley .seealso: PetscSFCreate(), DMPlexCreateProcessSF() 319b0a623aaSMatthew G. Knepley @*/ 320b0a623aaSMatthew G. Knepley PetscErrorCode DMPlexCreateTwoSidedProcessSF(DM dm, PetscSF sfPoint, PetscSection rootRankSection, IS rootRanks, PetscSection leafRankSection, IS leafRanks, IS *processRanks, PetscSF *sfProcess) 321b0a623aaSMatthew G. Knepley { 322b0a623aaSMatthew G. Knepley const PetscSFNode *remotePoints; 323b0a623aaSMatthew G. Knepley PetscInt *localPointsNew; 324b0a623aaSMatthew G. Knepley PetscSFNode *remotePointsNew; 325b0a623aaSMatthew G. Knepley const PetscInt *nranks; 326b0a623aaSMatthew G. Knepley PetscInt *ranksNew; 327b0a623aaSMatthew G. Knepley PetscBT neighbors; 328b0a623aaSMatthew G. Knepley PetscInt pStart, pEnd, p, numLeaves, l, numNeighbors, n; 3299852e123SBarry Smith PetscMPIInt size, proc, rank; 330b0a623aaSMatthew G. Knepley PetscErrorCode ierr; 331b0a623aaSMatthew G. Knepley 332b0a623aaSMatthew G. Knepley PetscFunctionBegin; 333b0a623aaSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 334b0a623aaSMatthew G. Knepley PetscValidHeaderSpecific(sfPoint, PETSCSF_CLASSID, 2); 335b0a623aaSMatthew G. Knepley if (processRanks) {PetscValidPointer(processRanks, 3);} 336b0a623aaSMatthew G. Knepley if (sfProcess) {PetscValidPointer(sfProcess, 4);} 3379852e123SBarry Smith ierr = MPI_Comm_size(PetscObjectComm((PetscObject) dm), &size);CHKERRQ(ierr); 338b0a623aaSMatthew G. Knepley ierr = MPI_Comm_rank(PetscObjectComm((PetscObject) dm), &rank);CHKERRQ(ierr); 339b0a623aaSMatthew G. Knepley ierr = PetscSFGetGraph(sfPoint, NULL, &numLeaves, NULL, &remotePoints);CHKERRQ(ierr); 3409852e123SBarry Smith ierr = PetscBTCreate(size, &neighbors);CHKERRQ(ierr); 3419852e123SBarry Smith ierr = PetscBTMemzero(size, neighbors);CHKERRQ(ierr); 342b0a623aaSMatthew G. Knepley /* Compute root-to-leaf process connectivity */ 343b0a623aaSMatthew G. Knepley ierr = PetscSectionGetChart(rootRankSection, &pStart, &pEnd);CHKERRQ(ierr); 344b0a623aaSMatthew G. Knepley ierr = ISGetIndices(rootRanks, &nranks);CHKERRQ(ierr); 345b0a623aaSMatthew G. Knepley for (p = pStart; p < pEnd; ++p) { 346b0a623aaSMatthew G. Knepley PetscInt ndof, noff, n; 347b0a623aaSMatthew G. Knepley 348b0a623aaSMatthew G. Knepley ierr = PetscSectionGetDof(rootRankSection, p, &ndof);CHKERRQ(ierr); 349b0a623aaSMatthew G. Knepley ierr = PetscSectionGetOffset(rootRankSection, p, &noff);CHKERRQ(ierr); 350302440fdSBarry Smith for (n = 0; n < ndof; ++n) {ierr = PetscBTSet(neighbors, nranks[noff+n]);CHKERRQ(ierr);} 351b0a623aaSMatthew G. Knepley } 352b0a623aaSMatthew G. Knepley ierr = ISRestoreIndices(rootRanks, &nranks);CHKERRQ(ierr); 353b0a623aaSMatthew G. Knepley /* Compute leaf-to-neighbor process connectivity */ 354b0a623aaSMatthew G. Knepley ierr = PetscSectionGetChart(leafRankSection, &pStart, &pEnd);CHKERRQ(ierr); 355b0a623aaSMatthew G. Knepley ierr = ISGetIndices(leafRanks, &nranks);CHKERRQ(ierr); 356b0a623aaSMatthew G. Knepley for (p = pStart; p < pEnd; ++p) { 357b0a623aaSMatthew G. Knepley PetscInt ndof, noff, n; 358b0a623aaSMatthew G. Knepley 359b0a623aaSMatthew G. Knepley ierr = PetscSectionGetDof(leafRankSection, p, &ndof);CHKERRQ(ierr); 360b0a623aaSMatthew G. Knepley ierr = PetscSectionGetOffset(leafRankSection, p, &noff);CHKERRQ(ierr); 361302440fdSBarry Smith for (n = 0; n < ndof; ++n) {ierr = PetscBTSet(neighbors, nranks[noff+n]);CHKERRQ(ierr);} 362b0a623aaSMatthew G. Knepley } 363b0a623aaSMatthew G. Knepley ierr = ISRestoreIndices(leafRanks, &nranks);CHKERRQ(ierr); 364b0a623aaSMatthew G. Knepley /* Compute leaf-to-root process connectivity */ 365b0a623aaSMatthew G. Knepley for (l = 0; l < numLeaves; ++l) {PetscBTSet(neighbors, remotePoints[l].rank);} 366b0a623aaSMatthew G. Knepley /* Calculate edges */ 367b0a623aaSMatthew G. Knepley PetscBTClear(neighbors, rank); 3689852e123SBarry Smith for(proc = 0, numNeighbors = 0; proc < size; ++proc) {if (PetscBTLookup(neighbors, proc)) ++numNeighbors;} 369b0a623aaSMatthew G. Knepley ierr = PetscMalloc1(numNeighbors, &ranksNew);CHKERRQ(ierr); 370b0a623aaSMatthew G. Knepley ierr = PetscMalloc1(numNeighbors, &localPointsNew);CHKERRQ(ierr); 371b0a623aaSMatthew G. Knepley ierr = PetscMalloc1(numNeighbors, &remotePointsNew);CHKERRQ(ierr); 3729852e123SBarry Smith for(proc = 0, n = 0; proc < size; ++proc) { 373b0a623aaSMatthew G. Knepley if (PetscBTLookup(neighbors, proc)) { 374b0a623aaSMatthew G. Knepley ranksNew[n] = proc; 375b0a623aaSMatthew G. Knepley localPointsNew[n] = proc; 376b0a623aaSMatthew G. Knepley remotePointsNew[n].index = rank; 377b0a623aaSMatthew G. Knepley remotePointsNew[n].rank = proc; 378b0a623aaSMatthew G. Knepley ++n; 379b0a623aaSMatthew G. Knepley } 380b0a623aaSMatthew G. Knepley } 381b0a623aaSMatthew G. Knepley ierr = PetscBTDestroy(&neighbors);CHKERRQ(ierr); 382b0a623aaSMatthew G. Knepley if (processRanks) {ierr = ISCreateGeneral(PetscObjectComm((PetscObject)dm), numNeighbors, ranksNew, PETSC_OWN_POINTER, processRanks);CHKERRQ(ierr);} 383b0a623aaSMatthew G. Knepley else {ierr = PetscFree(ranksNew);CHKERRQ(ierr);} 384b0a623aaSMatthew G. Knepley if (sfProcess) { 385b0a623aaSMatthew G. Knepley ierr = PetscSFCreate(PetscObjectComm((PetscObject)dm), sfProcess);CHKERRQ(ierr); 386b0a623aaSMatthew G. Knepley ierr = PetscObjectSetName((PetscObject) *sfProcess, "Two-Sided Process SF");CHKERRQ(ierr); 387b0a623aaSMatthew G. Knepley ierr = PetscSFSetFromOptions(*sfProcess);CHKERRQ(ierr); 3889852e123SBarry Smith ierr = PetscSFSetGraph(*sfProcess, size, numNeighbors, localPointsNew, PETSC_OWN_POINTER, remotePointsNew, PETSC_OWN_POINTER);CHKERRQ(ierr); 389b0a623aaSMatthew G. Knepley } 390b0a623aaSMatthew G. Knepley PetscFunctionReturn(0); 391b0a623aaSMatthew G. Knepley } 392b0a623aaSMatthew G. Knepley 393b0a623aaSMatthew G. Knepley /*@ 394b0a623aaSMatthew G. Knepley DMPlexDistributeOwnership - Compute owner information for shared points. This basically gets two-sided for an SF. 395b0a623aaSMatthew G. Knepley 396d083f849SBarry Smith Collective on dm 397b0a623aaSMatthew G. Knepley 398b0a623aaSMatthew G. Knepley Input Parameter: 399b0a623aaSMatthew G. Knepley . dm - The DM 400b0a623aaSMatthew G. Knepley 401b0a623aaSMatthew G. Knepley Output Parameters: 402b0a623aaSMatthew G. Knepley + rootSection - The number of leaves for a given root point 403b0a623aaSMatthew G. Knepley . rootrank - The rank of each edge into the root point 404b0a623aaSMatthew G. Knepley . leafSection - The number of processes sharing a given leaf point 405b0a623aaSMatthew G. Knepley - leafrank - The rank of each process sharing a leaf point 406b0a623aaSMatthew G. Knepley 407b0a623aaSMatthew G. Knepley Level: developer 408b0a623aaSMatthew G. Knepley 409dccdeccaSVaclav Hapla .seealso: DMPlexCreateOverlapLabel(), DMPlexDistribute(), DMPlexDistributeOverlap() 410b0a623aaSMatthew G. Knepley @*/ 411b0a623aaSMatthew G. Knepley PetscErrorCode DMPlexDistributeOwnership(DM dm, PetscSection rootSection, IS *rootrank, PetscSection leafSection, IS *leafrank) 412b0a623aaSMatthew G. Knepley { 413b0a623aaSMatthew G. Knepley MPI_Comm comm; 414b0a623aaSMatthew G. Knepley PetscSF sfPoint; 415b0a623aaSMatthew G. Knepley const PetscInt *rootdegree; 416b0a623aaSMatthew G. Knepley PetscInt *myrank, *remoterank; 417b0a623aaSMatthew G. Knepley PetscInt pStart, pEnd, p, nedges; 418b0a623aaSMatthew G. Knepley PetscMPIInt rank; 419b0a623aaSMatthew G. Knepley PetscErrorCode ierr; 420b0a623aaSMatthew G. Knepley 421b0a623aaSMatthew G. Knepley PetscFunctionBegin; 422b0a623aaSMatthew G. Knepley ierr = PetscObjectGetComm((PetscObject) dm, &comm);CHKERRQ(ierr); 423b0a623aaSMatthew G. Knepley ierr = MPI_Comm_rank(comm, &rank);CHKERRQ(ierr); 424b0a623aaSMatthew G. Knepley ierr = DMPlexGetChart(dm, &pStart, &pEnd);CHKERRQ(ierr); 425b0a623aaSMatthew G. Knepley ierr = DMGetPointSF(dm, &sfPoint);CHKERRQ(ierr); 426b0a623aaSMatthew G. Knepley /* Compute number of leaves for each root */ 427b0a623aaSMatthew G. Knepley ierr = PetscObjectSetName((PetscObject) rootSection, "Root Section");CHKERRQ(ierr); 428b0a623aaSMatthew G. Knepley ierr = PetscSectionSetChart(rootSection, pStart, pEnd);CHKERRQ(ierr); 429b0a623aaSMatthew G. Knepley ierr = PetscSFComputeDegreeBegin(sfPoint, &rootdegree);CHKERRQ(ierr); 430b0a623aaSMatthew G. Knepley ierr = PetscSFComputeDegreeEnd(sfPoint, &rootdegree);CHKERRQ(ierr); 431b0a623aaSMatthew G. Knepley for (p = pStart; p < pEnd; ++p) {ierr = PetscSectionSetDof(rootSection, p, rootdegree[p-pStart]);CHKERRQ(ierr);} 432b0a623aaSMatthew G. Knepley ierr = PetscSectionSetUp(rootSection);CHKERRQ(ierr); 433b0a623aaSMatthew G. Knepley /* Gather rank of each leaf to root */ 434b0a623aaSMatthew G. Knepley ierr = PetscSectionGetStorageSize(rootSection, &nedges);CHKERRQ(ierr); 435b0a623aaSMatthew G. Knepley ierr = PetscMalloc1(pEnd-pStart, &myrank);CHKERRQ(ierr); 436b0a623aaSMatthew G. Knepley ierr = PetscMalloc1(nedges, &remoterank);CHKERRQ(ierr); 437b0a623aaSMatthew G. Knepley for (p = 0; p < pEnd-pStart; ++p) myrank[p] = rank; 438b0a623aaSMatthew G. Knepley ierr = PetscSFGatherBegin(sfPoint, MPIU_INT, myrank, remoterank);CHKERRQ(ierr); 439b0a623aaSMatthew G. Knepley ierr = PetscSFGatherEnd(sfPoint, MPIU_INT, myrank, remoterank);CHKERRQ(ierr); 440b0a623aaSMatthew G. Knepley ierr = PetscFree(myrank);CHKERRQ(ierr); 441b0a623aaSMatthew G. Knepley ierr = ISCreateGeneral(comm, nedges, remoterank, PETSC_OWN_POINTER, rootrank);CHKERRQ(ierr); 442b0a623aaSMatthew G. Knepley /* Distribute remote ranks to leaves */ 443b0a623aaSMatthew G. Knepley ierr = PetscObjectSetName((PetscObject) leafSection, "Leaf Section");CHKERRQ(ierr); 444b0a623aaSMatthew G. Knepley ierr = DMPlexDistributeFieldIS(dm, sfPoint, rootSection, *rootrank, leafSection, leafrank);CHKERRQ(ierr); 445b0a623aaSMatthew G. Knepley PetscFunctionReturn(0); 446b0a623aaSMatthew G. Knepley } 447b0a623aaSMatthew G. Knepley 448278397a0SMatthew G. Knepley /*@C 449dccdeccaSVaclav Hapla DMPlexCreateOverlapLabel - Compute owner information for shared points. This basically gets two-sided for an SF. 450b0a623aaSMatthew G. Knepley 451d083f849SBarry Smith Collective on dm 452b0a623aaSMatthew G. Knepley 453b0a623aaSMatthew G. Knepley Input Parameters: 454b0a623aaSMatthew G. Knepley + dm - The DM 45524d039d7SMichael Lange . levels - Number of overlap levels 456b0a623aaSMatthew G. Knepley . rootSection - The number of leaves for a given root point 457b0a623aaSMatthew G. Knepley . rootrank - The rank of each edge into the root point 458b0a623aaSMatthew G. Knepley . leafSection - The number of processes sharing a given leaf point 459b0a623aaSMatthew G. Knepley - leafrank - The rank of each process sharing a leaf point 460b0a623aaSMatthew G. Knepley 461dccdeccaSVaclav Hapla Output Parameters: 462b4ec6ac8SBarry Smith . ovLabel - DMLabel containing remote overlap contributions as point/rank pairings 463b0a623aaSMatthew G. Knepley 464b0a623aaSMatthew G. Knepley Level: developer 465b0a623aaSMatthew G. Knepley 4661fd9873aSMichael Lange .seealso: DMPlexDistributeOwnership(), DMPlexDistribute() 467b0a623aaSMatthew G. Knepley @*/ 468dccdeccaSVaclav Hapla PetscErrorCode DMPlexCreateOverlapLabel(DM dm, PetscInt levels, PetscSection rootSection, IS rootrank, PetscSection leafSection, IS leafrank, DMLabel *ovLabel) 469b0a623aaSMatthew G. Knepley { 470e540f424SMichael Lange MPI_Comm comm; 471b0a623aaSMatthew G. Knepley DMLabel ovAdjByRank; /* A DMLabel containing all points adjacent to shared points, separated by rank (value in label) */ 472874ddda9SLisandro Dalcin PetscSF sfPoint; 473b0a623aaSMatthew G. Knepley const PetscSFNode *remote; 474b0a623aaSMatthew G. Knepley const PetscInt *local; 4751fd9873aSMichael Lange const PetscInt *nrank, *rrank; 476b0a623aaSMatthew G. Knepley PetscInt *adj = NULL; 4771fd9873aSMichael Lange PetscInt pStart, pEnd, p, sStart, sEnd, nleaves, l; 4789852e123SBarry Smith PetscMPIInt rank, size; 47931bc6364SLisandro Dalcin PetscBool flg; 480b0a623aaSMatthew G. Knepley PetscErrorCode ierr; 481b0a623aaSMatthew G. Knepley 482b0a623aaSMatthew G. Knepley PetscFunctionBegin; 4836ba1a4c7SVaclav Hapla *ovLabel = NULL; 484e540f424SMichael Lange ierr = PetscObjectGetComm((PetscObject) dm, &comm);CHKERRQ(ierr); 4859852e123SBarry Smith ierr = MPI_Comm_size(comm, &size);CHKERRQ(ierr); 486e540f424SMichael Lange ierr = MPI_Comm_rank(comm, &rank);CHKERRQ(ierr); 4876ba1a4c7SVaclav Hapla if (size == 1) PetscFunctionReturn(0); 488b0a623aaSMatthew G. Knepley ierr = DMGetPointSF(dm, &sfPoint);CHKERRQ(ierr); 489b0a623aaSMatthew G. Knepley ierr = DMPlexGetChart(dm, &pStart, &pEnd);CHKERRQ(ierr); 490b0a623aaSMatthew G. Knepley ierr = PetscSectionGetChart(leafSection, &sStart, &sEnd);CHKERRQ(ierr); 491b0a623aaSMatthew G. Knepley ierr = PetscSFGetGraph(sfPoint, NULL, &nleaves, &local, &remote);CHKERRQ(ierr); 492d67d17b1SMatthew G. Knepley ierr = DMLabelCreate(PETSC_COMM_SELF, "Overlap adjacency", &ovAdjByRank);CHKERRQ(ierr); 493b0a623aaSMatthew G. Knepley /* Handle leaves: shared with the root point */ 494b0a623aaSMatthew G. Knepley for (l = 0; l < nleaves; ++l) { 495b0a623aaSMatthew G. Knepley PetscInt adjSize = PETSC_DETERMINE, a; 496b0a623aaSMatthew G. Knepley 497df20756eSMatthew G. Knepley ierr = DMPlexGetAdjacency(dm, local ? local[l] : l, &adjSize, &adj);CHKERRQ(ierr); 498b0a623aaSMatthew G. Knepley for (a = 0; a < adjSize; ++a) {ierr = DMLabelSetValue(ovAdjByRank, adj[a], remote[l].rank);CHKERRQ(ierr);} 499b0a623aaSMatthew G. Knepley } 500b0a623aaSMatthew G. Knepley ierr = ISGetIndices(rootrank, &rrank);CHKERRQ(ierr); 501b0a623aaSMatthew G. Knepley ierr = ISGetIndices(leafrank, &nrank);CHKERRQ(ierr); 502b0a623aaSMatthew G. Knepley /* Handle roots */ 503b0a623aaSMatthew G. Knepley for (p = pStart; p < pEnd; ++p) { 504b0a623aaSMatthew G. Knepley PetscInt adjSize = PETSC_DETERMINE, neighbors = 0, noff, n, a; 505b0a623aaSMatthew G. Knepley 506b0a623aaSMatthew G. Knepley if ((p >= sStart) && (p < sEnd)) { 507b0a623aaSMatthew G. Knepley /* Some leaves share a root with other leaves on different processes */ 508b0a623aaSMatthew G. Knepley ierr = PetscSectionGetDof(leafSection, p, &neighbors);CHKERRQ(ierr); 509b0a623aaSMatthew G. Knepley if (neighbors) { 510b0a623aaSMatthew G. Knepley ierr = PetscSectionGetOffset(leafSection, p, &noff);CHKERRQ(ierr); 511b0a623aaSMatthew G. Knepley ierr = DMPlexGetAdjacency(dm, p, &adjSize, &adj);CHKERRQ(ierr); 512b0a623aaSMatthew G. Knepley for (n = 0; n < neighbors; ++n) { 513b0a623aaSMatthew G. Knepley const PetscInt remoteRank = nrank[noff+n]; 514b0a623aaSMatthew G. Knepley 515b0a623aaSMatthew G. Knepley if (remoteRank == rank) continue; 516b0a623aaSMatthew G. Knepley for (a = 0; a < adjSize; ++a) {ierr = DMLabelSetValue(ovAdjByRank, adj[a], remoteRank);CHKERRQ(ierr);} 517b0a623aaSMatthew G. Knepley } 518b0a623aaSMatthew G. Knepley } 519b0a623aaSMatthew G. Knepley } 520b0a623aaSMatthew G. Knepley /* Roots are shared with leaves */ 521b0a623aaSMatthew G. Knepley ierr = PetscSectionGetDof(rootSection, p, &neighbors);CHKERRQ(ierr); 522b0a623aaSMatthew G. Knepley if (!neighbors) continue; 523b0a623aaSMatthew G. Knepley ierr = PetscSectionGetOffset(rootSection, p, &noff);CHKERRQ(ierr); 524b0a623aaSMatthew G. Knepley ierr = DMPlexGetAdjacency(dm, p, &adjSize, &adj);CHKERRQ(ierr); 525b0a623aaSMatthew G. Knepley for (n = 0; n < neighbors; ++n) { 526b0a623aaSMatthew G. Knepley const PetscInt remoteRank = rrank[noff+n]; 527b0a623aaSMatthew G. Knepley 528b0a623aaSMatthew G. Knepley if (remoteRank == rank) continue; 529b0a623aaSMatthew G. Knepley for (a = 0; a < adjSize; ++a) {ierr = DMLabelSetValue(ovAdjByRank, adj[a], remoteRank);CHKERRQ(ierr);} 530b0a623aaSMatthew G. Knepley } 531b0a623aaSMatthew G. Knepley } 532b0a623aaSMatthew G. Knepley ierr = PetscFree(adj);CHKERRQ(ierr); 533b0a623aaSMatthew G. Knepley ierr = ISRestoreIndices(rootrank, &rrank);CHKERRQ(ierr); 534b0a623aaSMatthew G. Knepley ierr = ISRestoreIndices(leafrank, &nrank);CHKERRQ(ierr); 53524d039d7SMichael Lange /* Add additional overlap levels */ 536be200f8dSMichael Lange for (l = 1; l < levels; l++) { 537be200f8dSMichael Lange /* Propagate point donations over SF to capture remote connections */ 538be200f8dSMichael Lange ierr = DMPlexPartitionLabelPropagate(dm, ovAdjByRank);CHKERRQ(ierr); 539be200f8dSMichael Lange /* Add next level of point donations to the label */ 540be200f8dSMichael Lange ierr = DMPlexPartitionLabelAdjacency(dm, ovAdjByRank);CHKERRQ(ierr); 541be200f8dSMichael Lange } 54226a7d390SMatthew G. Knepley /* We require the closure in the overlap */ 5435abbe4feSMichael Lange ierr = DMPlexPartitionLabelClosure(dm, ovAdjByRank);CHKERRQ(ierr); 544c5929fdfSBarry Smith ierr = PetscOptionsHasName(((PetscObject) dm)->options,((PetscObject) dm)->prefix, "-overlap_view", &flg);CHKERRQ(ierr); 545e540f424SMichael Lange if (flg) { 546825f8a23SLisandro Dalcin PetscViewer viewer; 547825f8a23SLisandro Dalcin ierr = PetscViewerASCIIGetStdout(PetscObjectComm((PetscObject)dm), &viewer);CHKERRQ(ierr); 548825f8a23SLisandro Dalcin ierr = DMLabelView(ovAdjByRank, viewer);CHKERRQ(ierr); 549b0a623aaSMatthew G. Knepley } 550874ddda9SLisandro Dalcin /* Invert sender to receiver label */ 551d67d17b1SMatthew G. Knepley ierr = DMLabelCreate(PETSC_COMM_SELF, "Overlap label", ovLabel);CHKERRQ(ierr); 552874ddda9SLisandro Dalcin ierr = DMPlexPartitionLabelInvert(dm, ovAdjByRank, NULL, *ovLabel);CHKERRQ(ierr); 553a9f1d5b2SMichael Lange /* Add owned points, except for shared local points */ 554a9f1d5b2SMichael Lange for (p = pStart; p < pEnd; ++p) {ierr = DMLabelSetValue(*ovLabel, p, rank);CHKERRQ(ierr);} 555e540f424SMichael Lange for (l = 0; l < nleaves; ++l) { 556a9f1d5b2SMichael Lange ierr = DMLabelClearValue(*ovLabel, local[l], rank);CHKERRQ(ierr); 557a9f1d5b2SMichael Lange ierr = DMLabelSetValue(*ovLabel, remote[l].index, remote[l].rank);CHKERRQ(ierr); 558e540f424SMichael Lange } 559e540f424SMichael Lange /* Clean up */ 5601fd9873aSMichael Lange ierr = DMLabelDestroy(&ovAdjByRank);CHKERRQ(ierr); 561b0a623aaSMatthew G. Knepley PetscFunctionReturn(0); 562b0a623aaSMatthew G. Knepley } 56370034214SMatthew G. Knepley 56424cc2ca5SMatthew G. Knepley /*@C 56524cc2ca5SMatthew G. Knepley DMPlexCreateOverlapMigrationSF - Create an SF describing the new mesh distribution to make the overlap described by the input SF 56624cc2ca5SMatthew G. Knepley 567d083f849SBarry Smith Collective on dm 56824cc2ca5SMatthew G. Knepley 56924cc2ca5SMatthew G. Knepley Input Parameters: 57024cc2ca5SMatthew G. Knepley + dm - The DM 57124cc2ca5SMatthew G. Knepley - overlapSF - The SF mapping ghost points in overlap to owner points on other processes 57224cc2ca5SMatthew G. Knepley 57324cc2ca5SMatthew G. Knepley Output Parameters: 574a2b725a8SWilliam Gropp . migrationSF - An SF that maps original points in old locations to points in new locations 57524cc2ca5SMatthew G. Knepley 57624cc2ca5SMatthew G. Knepley Level: developer 57724cc2ca5SMatthew G. Knepley 578dccdeccaSVaclav Hapla .seealso: DMPlexCreateOverlapLabel(), DMPlexDistributeOverlap(), DMPlexDistribute() 57924cc2ca5SMatthew G. Knepley @*/ 58046f9b1c3SMichael Lange PetscErrorCode DMPlexCreateOverlapMigrationSF(DM dm, PetscSF overlapSF, PetscSF *migrationSF) 58146f9b1c3SMichael Lange { 58246f9b1c3SMichael Lange MPI_Comm comm; 5839852e123SBarry Smith PetscMPIInt rank, size; 58446f9b1c3SMichael Lange PetscInt d, dim, p, pStart, pEnd, nroots, nleaves, newLeaves, point, numSharedPoints; 58546f9b1c3SMichael Lange PetscInt *pointDepths, *remoteDepths, *ilocal; 58646f9b1c3SMichael Lange PetscInt *depthRecv, *depthShift, *depthIdx; 58746f9b1c3SMichael Lange PetscSFNode *iremote; 58846f9b1c3SMichael Lange PetscSF pointSF; 58946f9b1c3SMichael Lange const PetscInt *sharedLocal; 59046f9b1c3SMichael Lange const PetscSFNode *overlapRemote, *sharedRemote; 59146f9b1c3SMichael Lange PetscErrorCode ierr; 59246f9b1c3SMichael Lange 59346f9b1c3SMichael Lange PetscFunctionBegin; 59446f9b1c3SMichael Lange PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 59546f9b1c3SMichael Lange ierr = PetscObjectGetComm((PetscObject)dm, &comm);CHKERRQ(ierr); 59646f9b1c3SMichael Lange ierr = MPI_Comm_rank(comm, &rank);CHKERRQ(ierr); 5979852e123SBarry Smith ierr = MPI_Comm_size(comm, &size);CHKERRQ(ierr); 59846f9b1c3SMichael Lange ierr = DMGetDimension(dm, &dim);CHKERRQ(ierr); 59946f9b1c3SMichael Lange 60046f9b1c3SMichael Lange /* Before building the migration SF we need to know the new stratum offsets */ 60146f9b1c3SMichael Lange ierr = PetscSFGetGraph(overlapSF, &nroots, &nleaves, NULL, &overlapRemote);CHKERRQ(ierr); 60246f9b1c3SMichael Lange ierr = PetscMalloc2(nroots, &pointDepths, nleaves, &remoteDepths);CHKERRQ(ierr); 60346f9b1c3SMichael Lange for (d=0; d<dim+1; d++) { 60446f9b1c3SMichael Lange ierr = DMPlexGetDepthStratum(dm, d, &pStart, &pEnd);CHKERRQ(ierr); 60546f9b1c3SMichael Lange for (p=pStart; p<pEnd; p++) pointDepths[p] = d; 60646f9b1c3SMichael Lange } 60746f9b1c3SMichael Lange for (p=0; p<nleaves; p++) remoteDepths[p] = -1; 60846f9b1c3SMichael Lange ierr = PetscSFBcastBegin(overlapSF, MPIU_INT, pointDepths, remoteDepths);CHKERRQ(ierr); 60946f9b1c3SMichael Lange ierr = PetscSFBcastEnd(overlapSF, MPIU_INT, pointDepths, remoteDepths);CHKERRQ(ierr); 61046f9b1c3SMichael Lange 61146f9b1c3SMichael Lange /* Count recevied points in each stratum and compute the internal strata shift */ 61246f9b1c3SMichael Lange ierr = PetscMalloc3(dim+1, &depthRecv, dim+1, &depthShift, dim+1, &depthIdx);CHKERRQ(ierr); 61346f9b1c3SMichael Lange for (d=0; d<dim+1; d++) depthRecv[d]=0; 61446f9b1c3SMichael Lange for (p=0; p<nleaves; p++) depthRecv[remoteDepths[p]]++; 61546f9b1c3SMichael Lange depthShift[dim] = 0; 61646f9b1c3SMichael Lange for (d=0; d<dim; d++) depthShift[d] = depthRecv[dim]; 61746f9b1c3SMichael Lange for (d=1; d<dim; d++) depthShift[d] += depthRecv[0]; 61846f9b1c3SMichael Lange for (d=dim-2; d>0; d--) depthShift[d] += depthRecv[d+1]; 61946f9b1c3SMichael Lange for (d=0; d<dim+1; d++) { 62046f9b1c3SMichael Lange ierr = DMPlexGetDepthStratum(dm, d, &pStart, &pEnd);CHKERRQ(ierr); 62146f9b1c3SMichael Lange depthIdx[d] = pStart + depthShift[d]; 62246f9b1c3SMichael Lange } 62346f9b1c3SMichael Lange 62446f9b1c3SMichael Lange /* Form the overlap SF build an SF that describes the full overlap migration SF */ 62546f9b1c3SMichael Lange ierr = DMPlexGetChart(dm, &pStart, &pEnd);CHKERRQ(ierr); 62646f9b1c3SMichael Lange newLeaves = pEnd - pStart + nleaves; 62709b7985cSMatthew G. Knepley ierr = PetscMalloc1(newLeaves, &ilocal);CHKERRQ(ierr); 62809b7985cSMatthew G. Knepley ierr = PetscMalloc1(newLeaves, &iremote);CHKERRQ(ierr); 62946f9b1c3SMichael Lange /* First map local points to themselves */ 63046f9b1c3SMichael Lange for (d=0; d<dim+1; d++) { 63146f9b1c3SMichael Lange ierr = DMPlexGetDepthStratum(dm, d, &pStart, &pEnd);CHKERRQ(ierr); 63246f9b1c3SMichael Lange for (p=pStart; p<pEnd; p++) { 63346f9b1c3SMichael Lange point = p + depthShift[d]; 63446f9b1c3SMichael Lange ilocal[point] = point; 63546f9b1c3SMichael Lange iremote[point].index = p; 63646f9b1c3SMichael Lange iremote[point].rank = rank; 63746f9b1c3SMichael Lange depthIdx[d]++; 63846f9b1c3SMichael Lange } 63946f9b1c3SMichael Lange } 64046f9b1c3SMichael Lange 64146f9b1c3SMichael Lange /* Add in the remote roots for currently shared points */ 64246f9b1c3SMichael Lange ierr = DMGetPointSF(dm, &pointSF);CHKERRQ(ierr); 64346f9b1c3SMichael Lange ierr = PetscSFGetGraph(pointSF, NULL, &numSharedPoints, &sharedLocal, &sharedRemote);CHKERRQ(ierr); 64446f9b1c3SMichael Lange for (d=0; d<dim+1; d++) { 64546f9b1c3SMichael Lange ierr = DMPlexGetDepthStratum(dm, d, &pStart, &pEnd);CHKERRQ(ierr); 64646f9b1c3SMichael Lange for (p=0; p<numSharedPoints; p++) { 64746f9b1c3SMichael Lange if (pStart <= sharedLocal[p] && sharedLocal[p] < pEnd) { 64846f9b1c3SMichael Lange point = sharedLocal[p] + depthShift[d]; 64946f9b1c3SMichael Lange iremote[point].index = sharedRemote[p].index; 65046f9b1c3SMichael Lange iremote[point].rank = sharedRemote[p].rank; 65146f9b1c3SMichael Lange } 65246f9b1c3SMichael Lange } 65346f9b1c3SMichael Lange } 65446f9b1c3SMichael Lange 65546f9b1c3SMichael Lange /* Now add the incoming overlap points */ 65646f9b1c3SMichael Lange for (p=0; p<nleaves; p++) { 65746f9b1c3SMichael Lange point = depthIdx[remoteDepths[p]]; 65846f9b1c3SMichael Lange ilocal[point] = point; 65946f9b1c3SMichael Lange iremote[point].index = overlapRemote[p].index; 66046f9b1c3SMichael Lange iremote[point].rank = overlapRemote[p].rank; 66146f9b1c3SMichael Lange depthIdx[remoteDepths[p]]++; 66246f9b1c3SMichael Lange } 66315fff7beSMatthew G. Knepley ierr = PetscFree2(pointDepths,remoteDepths);CHKERRQ(ierr); 66446f9b1c3SMichael Lange 66546f9b1c3SMichael Lange ierr = PetscSFCreate(comm, migrationSF);CHKERRQ(ierr); 66646f9b1c3SMichael Lange ierr = PetscObjectSetName((PetscObject) *migrationSF, "Overlap Migration SF");CHKERRQ(ierr); 66746f9b1c3SMichael Lange ierr = PetscSFSetFromOptions(*migrationSF);CHKERRQ(ierr); 66846f9b1c3SMichael Lange ierr = DMPlexGetChart(dm, &pStart, &pEnd);CHKERRQ(ierr); 66946f9b1c3SMichael Lange ierr = PetscSFSetGraph(*migrationSF, pEnd-pStart, newLeaves, ilocal, PETSC_OWN_POINTER, iremote, PETSC_OWN_POINTER);CHKERRQ(ierr); 67046f9b1c3SMichael Lange 67146f9b1c3SMichael Lange ierr = PetscFree3(depthRecv, depthShift, depthIdx);CHKERRQ(ierr); 67270034214SMatthew G. Knepley PetscFunctionReturn(0); 67370034214SMatthew G. Knepley } 67470034214SMatthew G. Knepley 675a9f1d5b2SMichael Lange /*@ 676f0e73a3dSToby Isaac DMPlexStratifyMigrationSF - Rearrange the leaves of a migration sf for stratification. 677a9f1d5b2SMichael Lange 678a9f1d5b2SMichael Lange Input Parameter: 679a9f1d5b2SMichael Lange + dm - The DM 680a9f1d5b2SMichael Lange - sf - A star forest with non-ordered leaves, usually defining a DM point migration 681a9f1d5b2SMichael Lange 682a9f1d5b2SMichael Lange Output Parameter: 683a9f1d5b2SMichael Lange . migrationSF - A star forest with added leaf indirection that ensures the resulting DM is stratified 684a9f1d5b2SMichael Lange 685a9f1d5b2SMichael Lange Level: developer 686a9f1d5b2SMichael Lange 687a9f1d5b2SMichael Lange .seealso: DMPlexPartitionLabelCreateSF(), DMPlexDistribute(), DMPlexDistributeOverlap() 688a9f1d5b2SMichael Lange @*/ 689a9f1d5b2SMichael Lange PetscErrorCode DMPlexStratifyMigrationSF(DM dm, PetscSF sf, PetscSF *migrationSF) 690a9f1d5b2SMichael Lange { 691a9f1d5b2SMichael Lange MPI_Comm comm; 6929852e123SBarry Smith PetscMPIInt rank, size; 6937fab53ddSMatthew G. Knepley PetscInt d, ldepth, depth, p, pStart, pEnd, nroots, nleaves; 694a9f1d5b2SMichael Lange PetscInt *pointDepths, *remoteDepths, *ilocal; 695a9f1d5b2SMichael Lange PetscInt *depthRecv, *depthShift, *depthIdx; 696f0e73a3dSToby Isaac PetscInt hybEnd[4]; 697a9f1d5b2SMichael Lange const PetscSFNode *iremote; 698a9f1d5b2SMichael Lange PetscErrorCode ierr; 699a9f1d5b2SMichael Lange 700a9f1d5b2SMichael Lange PetscFunctionBegin; 701a9f1d5b2SMichael Lange PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 702a9f1d5b2SMichael Lange ierr = PetscObjectGetComm((PetscObject) dm, &comm);CHKERRQ(ierr); 703a9f1d5b2SMichael Lange ierr = MPI_Comm_rank(comm, &rank);CHKERRQ(ierr); 7049852e123SBarry Smith ierr = MPI_Comm_size(comm, &size);CHKERRQ(ierr); 7057fab53ddSMatthew G. Knepley ierr = DMPlexGetDepth(dm, &ldepth);CHKERRQ(ierr); 706b2566f29SBarry Smith ierr = MPIU_Allreduce(&ldepth, &depth, 1, MPIU_INT, MPI_MAX, comm);CHKERRQ(ierr); 7077fab53ddSMatthew G. Knepley if ((ldepth >= 0) && (depth != ldepth)) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Inconsistent Plex depth %d != %d", ldepth, depth); 70830b0ce1bSStefano Zampini ierr = PetscLogEventBegin(DMPLEX_PartStratSF,dm,0,0,0);CHKERRQ(ierr); 709a9f1d5b2SMichael Lange 710a9f1d5b2SMichael Lange /* Before building the migration SF we need to know the new stratum offsets */ 711a9f1d5b2SMichael Lange ierr = PetscSFGetGraph(sf, &nroots, &nleaves, NULL, &iremote);CHKERRQ(ierr); 712a9f1d5b2SMichael Lange ierr = PetscMalloc2(nroots, &pointDepths, nleaves, &remoteDepths);CHKERRQ(ierr); 7135510c841SStefano Zampini ierr = DMPlexGetHybridBounds(dm,&hybEnd[depth],&hybEnd[PetscMax(depth-1,0)],&hybEnd[1],&hybEnd[0]);CHKERRQ(ierr); 7147fab53ddSMatthew G. Knepley for (d = 0; d < depth+1; ++d) { 715a9f1d5b2SMichael Lange ierr = DMPlexGetDepthStratum(dm, d, &pStart, &pEnd);CHKERRQ(ierr); 716f0e73a3dSToby Isaac for (p = pStart; p < pEnd; ++p) { 717f0e73a3dSToby Isaac if (hybEnd[d] >= 0 && p >= hybEnd[d]) { /* put in a separate value for hybrid points */ 718f0e73a3dSToby Isaac pointDepths[p] = 2 * d; 719f0e73a3dSToby Isaac } else { 720f0e73a3dSToby Isaac pointDepths[p] = 2 * d + 1; 721f0e73a3dSToby Isaac } 722f0e73a3dSToby Isaac } 723a9f1d5b2SMichael Lange } 7247fab53ddSMatthew G. Knepley for (p = 0; p < nleaves; ++p) remoteDepths[p] = -1; 725a9f1d5b2SMichael Lange ierr = PetscSFBcastBegin(sf, MPIU_INT, pointDepths, remoteDepths);CHKERRQ(ierr); 726a9f1d5b2SMichael Lange ierr = PetscSFBcastEnd(sf, MPIU_INT, pointDepths, remoteDepths);CHKERRQ(ierr); 727bba01988SBarry Smith /* Count received points in each stratum and compute the internal strata shift */ 728f0e73a3dSToby Isaac ierr = PetscMalloc3(2*(depth+1), &depthRecv, 2*(depth+1), &depthShift, 2*(depth+1), &depthIdx);CHKERRQ(ierr); 729f0e73a3dSToby Isaac for (d = 0; d < 2*(depth+1); ++d) depthRecv[d] = 0; 7307fab53ddSMatthew G. Knepley for (p = 0; p < nleaves; ++p) depthRecv[remoteDepths[p]]++; 731f0e73a3dSToby Isaac depthShift[2*depth+1] = 0; 732f0e73a3dSToby Isaac for (d = 0; d < 2*depth+1; ++d) depthShift[d] = depthRecv[2 * depth + 1]; 733f0e73a3dSToby Isaac for (d = 0; d < 2*depth; ++d) depthShift[d] += depthRecv[2 * depth]; 734f0e73a3dSToby Isaac depthShift[0] += depthRecv[1]; 735f0e73a3dSToby Isaac for (d = 2; d < 2*depth; ++d) depthShift[d] += depthRecv[1]; 736f0e73a3dSToby Isaac for (d = 2; d < 2*depth; ++d) depthShift[d] += depthRecv[0]; 737f0e73a3dSToby Isaac for (d = 2 * depth-1; d > 2; --d) { 738f0e73a3dSToby Isaac PetscInt e; 739f0e73a3dSToby Isaac 740f0e73a3dSToby Isaac for (e = d -1; e > 1; --e) depthShift[e] += depthRecv[d]; 741f0e73a3dSToby Isaac } 742f0e73a3dSToby Isaac for (d = 0; d < 2*(depth+1); ++d) {depthIdx[d] = 0;} 743a9f1d5b2SMichael Lange /* Derive a new local permutation based on stratified indices */ 744a9f1d5b2SMichael Lange ierr = PetscMalloc1(nleaves, &ilocal);CHKERRQ(ierr); 7457fab53ddSMatthew G. Knepley for (p = 0; p < nleaves; ++p) { 7467fab53ddSMatthew G. Knepley const PetscInt dep = remoteDepths[p]; 7477fab53ddSMatthew G. Knepley 7487fab53ddSMatthew G. Knepley ilocal[p] = depthShift[dep] + depthIdx[dep]; 7497fab53ddSMatthew G. Knepley depthIdx[dep]++; 750a9f1d5b2SMichael Lange } 751a9f1d5b2SMichael Lange ierr = PetscSFCreate(comm, migrationSF);CHKERRQ(ierr); 752a9f1d5b2SMichael Lange ierr = PetscObjectSetName((PetscObject) *migrationSF, "Migration SF");CHKERRQ(ierr); 753a9f1d5b2SMichael Lange ierr = PetscSFSetGraph(*migrationSF, nroots, nleaves, ilocal, PETSC_OWN_POINTER, iremote, PETSC_COPY_VALUES);CHKERRQ(ierr); 754a9f1d5b2SMichael Lange ierr = PetscFree2(pointDepths,remoteDepths);CHKERRQ(ierr); 755a9f1d5b2SMichael Lange ierr = PetscFree3(depthRecv, depthShift, depthIdx);CHKERRQ(ierr); 75630b0ce1bSStefano Zampini ierr = PetscLogEventEnd(DMPLEX_PartStratSF,dm,0,0,0);CHKERRQ(ierr); 757a9f1d5b2SMichael Lange PetscFunctionReturn(0); 758a9f1d5b2SMichael Lange } 759a9f1d5b2SMichael Lange 76070034214SMatthew G. Knepley /*@ 76170034214SMatthew G. Knepley DMPlexDistributeField - Distribute field data to match a given PetscSF, usually the SF from mesh distribution 76270034214SMatthew G. Knepley 763d083f849SBarry Smith Collective on dm 76470034214SMatthew G. Knepley 76570034214SMatthew G. Knepley Input Parameters: 76670034214SMatthew G. Knepley + dm - The DMPlex object 76770034214SMatthew G. Knepley . pointSF - The PetscSF describing the communication pattern 76870034214SMatthew G. Knepley . originalSection - The PetscSection for existing data layout 769cb15cd0eSMatthew G. Knepley - originalVec - The existing data in a local vector 77070034214SMatthew G. Knepley 77170034214SMatthew G. Knepley Output Parameters: 77270034214SMatthew G. Knepley + newSection - The PetscSF describing the new data layout 773cb15cd0eSMatthew G. Knepley - newVec - The new data in a local vector 77470034214SMatthew G. Knepley 77570034214SMatthew G. Knepley Level: developer 77670034214SMatthew G. Knepley 77770034214SMatthew G. Knepley .seealso: DMPlexDistribute(), DMPlexDistributeFieldIS(), DMPlexDistributeData() 77870034214SMatthew G. Knepley @*/ 77970034214SMatthew G. Knepley PetscErrorCode DMPlexDistributeField(DM dm, PetscSF pointSF, PetscSection originalSection, Vec originalVec, PetscSection newSection, Vec newVec) 78070034214SMatthew G. Knepley { 78170034214SMatthew G. Knepley PetscSF fieldSF; 78270034214SMatthew G. Knepley PetscInt *remoteOffsets, fieldSize; 78370034214SMatthew G. Knepley PetscScalar *originalValues, *newValues; 78470034214SMatthew G. Knepley PetscErrorCode ierr; 78570034214SMatthew G. Knepley 78670034214SMatthew G. Knepley PetscFunctionBegin; 78770034214SMatthew G. Knepley ierr = PetscLogEventBegin(DMPLEX_DistributeField,dm,0,0,0);CHKERRQ(ierr); 78870034214SMatthew G. Knepley ierr = PetscSFDistributeSection(pointSF, originalSection, &remoteOffsets, newSection);CHKERRQ(ierr); 78970034214SMatthew G. Knepley 79070034214SMatthew G. Knepley ierr = PetscSectionGetStorageSize(newSection, &fieldSize);CHKERRQ(ierr); 79170034214SMatthew G. Knepley ierr = VecSetSizes(newVec, fieldSize, PETSC_DETERMINE);CHKERRQ(ierr); 79270034214SMatthew G. Knepley ierr = VecSetType(newVec,dm->vectype);CHKERRQ(ierr); 79370034214SMatthew G. Knepley 79470034214SMatthew G. Knepley ierr = VecGetArray(originalVec, &originalValues);CHKERRQ(ierr); 79570034214SMatthew G. Knepley ierr = VecGetArray(newVec, &newValues);CHKERRQ(ierr); 79670034214SMatthew G. Knepley ierr = PetscSFCreateSectionSF(pointSF, originalSection, remoteOffsets, newSection, &fieldSF);CHKERRQ(ierr); 7978a713f3bSLawrence Mitchell ierr = PetscFree(remoteOffsets);CHKERRQ(ierr); 79870034214SMatthew G. Knepley ierr = PetscSFBcastBegin(fieldSF, MPIU_SCALAR, originalValues, newValues);CHKERRQ(ierr); 79970034214SMatthew G. Knepley ierr = PetscSFBcastEnd(fieldSF, MPIU_SCALAR, originalValues, newValues);CHKERRQ(ierr); 80070034214SMatthew G. Knepley ierr = PetscSFDestroy(&fieldSF);CHKERRQ(ierr); 80170034214SMatthew G. Knepley ierr = VecRestoreArray(newVec, &newValues);CHKERRQ(ierr); 80270034214SMatthew G. Knepley ierr = VecRestoreArray(originalVec, &originalValues);CHKERRQ(ierr); 80370034214SMatthew G. Knepley ierr = PetscLogEventEnd(DMPLEX_DistributeField,dm,0,0,0);CHKERRQ(ierr); 80470034214SMatthew G. Knepley PetscFunctionReturn(0); 80570034214SMatthew G. Knepley } 80670034214SMatthew G. Knepley 80770034214SMatthew G. Knepley /*@ 80870034214SMatthew G. Knepley DMPlexDistributeFieldIS - Distribute field data to match a given PetscSF, usually the SF from mesh distribution 80970034214SMatthew G. Knepley 810d083f849SBarry Smith Collective on dm 81170034214SMatthew G. Knepley 81270034214SMatthew G. Knepley Input Parameters: 81370034214SMatthew G. Knepley + dm - The DMPlex object 81470034214SMatthew G. Knepley . pointSF - The PetscSF describing the communication pattern 81570034214SMatthew G. Knepley . originalSection - The PetscSection for existing data layout 81670034214SMatthew G. Knepley - originalIS - The existing data 81770034214SMatthew G. Knepley 81870034214SMatthew G. Knepley Output Parameters: 81970034214SMatthew G. Knepley + newSection - The PetscSF describing the new data layout 82070034214SMatthew G. Knepley - newIS - The new data 82170034214SMatthew G. Knepley 82270034214SMatthew G. Knepley Level: developer 82370034214SMatthew G. Knepley 82470034214SMatthew G. Knepley .seealso: DMPlexDistribute(), DMPlexDistributeField(), DMPlexDistributeData() 82570034214SMatthew G. Knepley @*/ 82670034214SMatthew G. Knepley PetscErrorCode DMPlexDistributeFieldIS(DM dm, PetscSF pointSF, PetscSection originalSection, IS originalIS, PetscSection newSection, IS *newIS) 82770034214SMatthew G. Knepley { 82870034214SMatthew G. Knepley PetscSF fieldSF; 82970034214SMatthew G. Knepley PetscInt *newValues, *remoteOffsets, fieldSize; 83070034214SMatthew G. Knepley const PetscInt *originalValues; 83170034214SMatthew G. Knepley PetscErrorCode ierr; 83270034214SMatthew G. Knepley 83370034214SMatthew G. Knepley PetscFunctionBegin; 83470034214SMatthew G. Knepley ierr = PetscLogEventBegin(DMPLEX_DistributeField,dm,0,0,0);CHKERRQ(ierr); 83570034214SMatthew G. Knepley ierr = PetscSFDistributeSection(pointSF, originalSection, &remoteOffsets, newSection);CHKERRQ(ierr); 83670034214SMatthew G. Knepley 83770034214SMatthew G. Knepley ierr = PetscSectionGetStorageSize(newSection, &fieldSize);CHKERRQ(ierr); 838854ce69bSBarry Smith ierr = PetscMalloc1(fieldSize, &newValues);CHKERRQ(ierr); 83970034214SMatthew G. Knepley 84070034214SMatthew G. Knepley ierr = ISGetIndices(originalIS, &originalValues);CHKERRQ(ierr); 84170034214SMatthew G. Knepley ierr = PetscSFCreateSectionSF(pointSF, originalSection, remoteOffsets, newSection, &fieldSF);CHKERRQ(ierr); 8428a713f3bSLawrence Mitchell ierr = PetscFree(remoteOffsets);CHKERRQ(ierr); 843aaf8c182SMatthew G. Knepley ierr = PetscSFBcastBegin(fieldSF, MPIU_INT, (PetscInt *) originalValues, newValues);CHKERRQ(ierr); 844aaf8c182SMatthew G. Knepley ierr = PetscSFBcastEnd(fieldSF, MPIU_INT, (PetscInt *) originalValues, newValues);CHKERRQ(ierr); 84570034214SMatthew G. Knepley ierr = PetscSFDestroy(&fieldSF);CHKERRQ(ierr); 84670034214SMatthew G. Knepley ierr = ISRestoreIndices(originalIS, &originalValues);CHKERRQ(ierr); 84770034214SMatthew G. Knepley ierr = ISCreateGeneral(PetscObjectComm((PetscObject) pointSF), fieldSize, newValues, PETSC_OWN_POINTER, newIS);CHKERRQ(ierr); 84870034214SMatthew G. Knepley ierr = PetscLogEventEnd(DMPLEX_DistributeField,dm,0,0,0);CHKERRQ(ierr); 84970034214SMatthew G. Knepley PetscFunctionReturn(0); 85070034214SMatthew G. Knepley } 85170034214SMatthew G. Knepley 85270034214SMatthew G. Knepley /*@ 85370034214SMatthew G. Knepley DMPlexDistributeData - Distribute field data to match a given PetscSF, usually the SF from mesh distribution 85470034214SMatthew G. Knepley 855d083f849SBarry Smith Collective on dm 85670034214SMatthew G. Knepley 85770034214SMatthew G. Knepley Input Parameters: 85870034214SMatthew G. Knepley + dm - The DMPlex object 85970034214SMatthew G. Knepley . pointSF - The PetscSF describing the communication pattern 86070034214SMatthew G. Knepley . originalSection - The PetscSection for existing data layout 86170034214SMatthew G. Knepley . datatype - The type of data 86270034214SMatthew G. Knepley - originalData - The existing data 86370034214SMatthew G. Knepley 86470034214SMatthew G. Knepley Output Parameters: 86570034214SMatthew G. Knepley + newSection - The PetscSection describing the new data layout 86670034214SMatthew G. Knepley - newData - The new data 86770034214SMatthew G. Knepley 86870034214SMatthew G. Knepley Level: developer 86970034214SMatthew G. Knepley 87070034214SMatthew G. Knepley .seealso: DMPlexDistribute(), DMPlexDistributeField() 87170034214SMatthew G. Knepley @*/ 87270034214SMatthew G. Knepley PetscErrorCode DMPlexDistributeData(DM dm, PetscSF pointSF, PetscSection originalSection, MPI_Datatype datatype, void *originalData, PetscSection newSection, void **newData) 87370034214SMatthew G. Knepley { 87470034214SMatthew G. Knepley PetscSF fieldSF; 87570034214SMatthew G. Knepley PetscInt *remoteOffsets, fieldSize; 87670034214SMatthew G. Knepley PetscMPIInt dataSize; 87770034214SMatthew G. Knepley PetscErrorCode ierr; 87870034214SMatthew G. Knepley 87970034214SMatthew G. Knepley PetscFunctionBegin; 88070034214SMatthew G. Knepley ierr = PetscLogEventBegin(DMPLEX_DistributeData,dm,0,0,0);CHKERRQ(ierr); 88170034214SMatthew G. Knepley ierr = PetscSFDistributeSection(pointSF, originalSection, &remoteOffsets, newSection);CHKERRQ(ierr); 88270034214SMatthew G. Knepley 88370034214SMatthew G. Knepley ierr = PetscSectionGetStorageSize(newSection, &fieldSize);CHKERRQ(ierr); 88470034214SMatthew G. Knepley ierr = MPI_Type_size(datatype, &dataSize);CHKERRQ(ierr); 88570034214SMatthew G. Knepley ierr = PetscMalloc(fieldSize * dataSize, newData);CHKERRQ(ierr); 88670034214SMatthew G. Knepley 88770034214SMatthew G. Knepley ierr = PetscSFCreateSectionSF(pointSF, originalSection, remoteOffsets, newSection, &fieldSF);CHKERRQ(ierr); 8888a713f3bSLawrence Mitchell ierr = PetscFree(remoteOffsets);CHKERRQ(ierr); 88970034214SMatthew G. Knepley ierr = PetscSFBcastBegin(fieldSF, datatype, originalData, *newData);CHKERRQ(ierr); 89070034214SMatthew G. Knepley ierr = PetscSFBcastEnd(fieldSF, datatype, originalData, *newData);CHKERRQ(ierr); 89170034214SMatthew G. Knepley ierr = PetscSFDestroy(&fieldSF);CHKERRQ(ierr); 89270034214SMatthew G. Knepley ierr = PetscLogEventEnd(DMPLEX_DistributeData,dm,0,0,0);CHKERRQ(ierr); 89370034214SMatthew G. Knepley PetscFunctionReturn(0); 89470034214SMatthew G. Knepley } 89570034214SMatthew G. Knepley 89624cc2ca5SMatthew G. Knepley static PetscErrorCode DMPlexDistributeCones(DM dm, PetscSF migrationSF, ISLocalToGlobalMapping original, ISLocalToGlobalMapping renumbering, DM dmParallel) 897cc71bff1SMichael Lange { 898cc71bff1SMichael Lange DM_Plex *pmesh = (DM_Plex*) (dmParallel)->data; 899cc71bff1SMichael Lange MPI_Comm comm; 900cc71bff1SMichael Lange PetscSF coneSF; 901cc71bff1SMichael Lange PetscSection originalConeSection, newConeSection; 902ac04eaf7SToby Isaac PetscInt *remoteOffsets, *cones, *globCones, *newCones, newConesSize; 903cc71bff1SMichael Lange PetscBool flg; 904cc71bff1SMichael Lange PetscErrorCode ierr; 905cc71bff1SMichael Lange 906cc71bff1SMichael Lange PetscFunctionBegin; 907cc71bff1SMichael Lange PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 9080c86c063SLisandro Dalcin PetscValidHeaderSpecific(dmParallel, DM_CLASSID, 5); 9090c86c063SLisandro Dalcin ierr = PetscLogEventBegin(DMPLEX_DistributeCones,dm,0,0,0);CHKERRQ(ierr); 910cc71bff1SMichael Lange /* Distribute cone section */ 911cc71bff1SMichael Lange ierr = PetscObjectGetComm((PetscObject)dm, &comm);CHKERRQ(ierr); 912cc71bff1SMichael Lange ierr = DMPlexGetConeSection(dm, &originalConeSection);CHKERRQ(ierr); 913cc71bff1SMichael Lange ierr = DMPlexGetConeSection(dmParallel, &newConeSection);CHKERRQ(ierr); 914cc71bff1SMichael Lange ierr = PetscSFDistributeSection(migrationSF, originalConeSection, &remoteOffsets, newConeSection);CHKERRQ(ierr); 915cc71bff1SMichael Lange ierr = DMSetUp(dmParallel);CHKERRQ(ierr); 916cc71bff1SMichael Lange { 917cc71bff1SMichael Lange PetscInt pStart, pEnd, p; 918cc71bff1SMichael Lange 919cc71bff1SMichael Lange ierr = PetscSectionGetChart(newConeSection, &pStart, &pEnd);CHKERRQ(ierr); 920cc71bff1SMichael Lange for (p = pStart; p < pEnd; ++p) { 921cc71bff1SMichael Lange PetscInt coneSize; 922cc71bff1SMichael Lange ierr = PetscSectionGetDof(newConeSection, p, &coneSize);CHKERRQ(ierr); 923cc71bff1SMichael Lange pmesh->maxConeSize = PetscMax(pmesh->maxConeSize, coneSize); 924cc71bff1SMichael Lange } 925cc71bff1SMichael Lange } 926cc71bff1SMichael Lange /* Communicate and renumber cones */ 927cc71bff1SMichael Lange ierr = PetscSFCreateSectionSF(migrationSF, originalConeSection, remoteOffsets, newConeSection, &coneSF);CHKERRQ(ierr); 9288a713f3bSLawrence Mitchell ierr = PetscFree(remoteOffsets);CHKERRQ(ierr); 929cc71bff1SMichael Lange ierr = DMPlexGetCones(dm, &cones);CHKERRQ(ierr); 930ac04eaf7SToby Isaac if (original) { 931ac04eaf7SToby Isaac PetscInt numCones; 932ac04eaf7SToby Isaac 933367003a6SStefano Zampini ierr = PetscSectionGetStorageSize(originalConeSection,&numCones);CHKERRQ(ierr); 934367003a6SStefano Zampini ierr = PetscMalloc1(numCones,&globCones);CHKERRQ(ierr); 935ac04eaf7SToby Isaac ierr = ISLocalToGlobalMappingApplyBlock(original, numCones, cones, globCones);CHKERRQ(ierr); 936367003a6SStefano Zampini } else { 937ac04eaf7SToby Isaac globCones = cones; 938ac04eaf7SToby Isaac } 939cc71bff1SMichael Lange ierr = DMPlexGetCones(dmParallel, &newCones);CHKERRQ(ierr); 940ac04eaf7SToby Isaac ierr = PetscSFBcastBegin(coneSF, MPIU_INT, globCones, newCones);CHKERRQ(ierr); 941ac04eaf7SToby Isaac ierr = PetscSFBcastEnd(coneSF, MPIU_INT, globCones, newCones);CHKERRQ(ierr); 942ac04eaf7SToby Isaac if (original) { 943ac04eaf7SToby Isaac ierr = PetscFree(globCones);CHKERRQ(ierr); 944ac04eaf7SToby Isaac } 945cc71bff1SMichael Lange ierr = PetscSectionGetStorageSize(newConeSection, &newConesSize);CHKERRQ(ierr); 946cc71bff1SMichael Lange ierr = ISGlobalToLocalMappingApplyBlock(renumbering, IS_GTOLM_MASK, newConesSize, newCones, NULL, newCones);CHKERRQ(ierr); 94762795ce3SStefano Zampini #if defined(PETSC_USE_DEBUG) 9483533c52bSMatthew G. Knepley { 9493533c52bSMatthew G. Knepley PetscInt p; 9503533c52bSMatthew G. Knepley PetscBool valid = PETSC_TRUE; 9513533c52bSMatthew G. Knepley for (p = 0; p < newConesSize; ++p) { 952367003a6SStefano Zampini if (newCones[p] < 0) {valid = PETSC_FALSE; ierr = PetscPrintf(PETSC_COMM_SELF, "[%d] Point %D not in overlap SF\n", PetscGlobalRank,p);CHKERRQ(ierr);} 9533533c52bSMatthew G. Knepley } 9543533c52bSMatthew G. Knepley if (!valid) SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Invalid global to local map"); 9553533c52bSMatthew G. Knepley } 9563533c52bSMatthew G. Knepley #endif 957c5929fdfSBarry Smith ierr = PetscOptionsHasName(((PetscObject) dm)->options,((PetscObject) dm)->prefix, "-cones_view", &flg);CHKERRQ(ierr); 958cc71bff1SMichael Lange if (flg) { 959cc71bff1SMichael Lange ierr = PetscPrintf(comm, "Serial Cone Section:\n");CHKERRQ(ierr); 960a8c5bd36SStefano Zampini ierr = PetscSectionView(originalConeSection, PETSC_VIEWER_STDOUT_(comm));CHKERRQ(ierr); 961cc71bff1SMichael Lange ierr = PetscPrintf(comm, "Parallel Cone Section:\n");CHKERRQ(ierr); 962a8c5bd36SStefano Zampini ierr = PetscSectionView(newConeSection, PETSC_VIEWER_STDOUT_(comm));CHKERRQ(ierr); 963cc71bff1SMichael Lange ierr = PetscSFView(coneSF, NULL);CHKERRQ(ierr); 964cc71bff1SMichael Lange } 965cc71bff1SMichael Lange ierr = DMPlexGetConeOrientations(dm, &cones);CHKERRQ(ierr); 966cc71bff1SMichael Lange ierr = DMPlexGetConeOrientations(dmParallel, &newCones);CHKERRQ(ierr); 967cc71bff1SMichael Lange ierr = PetscSFBcastBegin(coneSF, MPIU_INT, cones, newCones);CHKERRQ(ierr); 968cc71bff1SMichael Lange ierr = PetscSFBcastEnd(coneSF, MPIU_INT, cones, newCones);CHKERRQ(ierr); 969cc71bff1SMichael Lange ierr = PetscSFDestroy(&coneSF);CHKERRQ(ierr); 970cc71bff1SMichael Lange ierr = PetscLogEventEnd(DMPLEX_DistributeCones,dm,0,0,0);CHKERRQ(ierr); 971eaf898f9SPatrick Sanan /* Create supports and stratify DMPlex */ 972cc71bff1SMichael Lange { 973cc71bff1SMichael Lange PetscInt pStart, pEnd; 974cc71bff1SMichael Lange 975cc71bff1SMichael Lange ierr = PetscSectionGetChart(pmesh->coneSection, &pStart, &pEnd);CHKERRQ(ierr); 976cc71bff1SMichael Lange ierr = PetscSectionSetChart(pmesh->supportSection, pStart, pEnd);CHKERRQ(ierr); 977cc71bff1SMichael Lange } 978cc71bff1SMichael Lange ierr = DMPlexSymmetrize(dmParallel);CHKERRQ(ierr); 979cc71bff1SMichael Lange ierr = DMPlexStratify(dmParallel);CHKERRQ(ierr); 9801cf84007SMatthew G. Knepley { 9811cf84007SMatthew G. Knepley PetscBool useCone, useClosure, useAnchors; 9821cf84007SMatthew G. Knepley 983b0441da4SMatthew G. Knepley ierr = DMGetBasicAdjacency(dm, &useCone, &useClosure);CHKERRQ(ierr); 984b0441da4SMatthew G. Knepley ierr = DMSetBasicAdjacency(dmParallel, useCone, useClosure);CHKERRQ(ierr); 9851cf84007SMatthew G. Knepley ierr = DMPlexGetAdjacencyUseAnchors(dm, &useAnchors);CHKERRQ(ierr); 9861cf84007SMatthew G. Knepley ierr = DMPlexSetAdjacencyUseAnchors(dmParallel, useAnchors);CHKERRQ(ierr); 9871cf84007SMatthew G. Knepley } 988cc71bff1SMichael Lange PetscFunctionReturn(0); 989cc71bff1SMichael Lange } 990cc71bff1SMichael Lange 99124cc2ca5SMatthew G. Knepley static PetscErrorCode DMPlexDistributeCoordinates(DM dm, PetscSF migrationSF, DM dmParallel) 9920df0e737SMichael Lange { 9930df0e737SMichael Lange MPI_Comm comm; 9940df0e737SMichael Lange PetscSection originalCoordSection, newCoordSection; 9950df0e737SMichael Lange Vec originalCoordinates, newCoordinates; 9960df0e737SMichael Lange PetscInt bs; 99790b157c4SStefano Zampini PetscBool isper; 9980df0e737SMichael Lange const char *name; 9990df0e737SMichael Lange const PetscReal *maxCell, *L; 10005dc8c3f7SMatthew G. Knepley const DMBoundaryType *bd; 10010df0e737SMichael Lange PetscErrorCode ierr; 10020df0e737SMichael Lange 10030df0e737SMichael Lange PetscFunctionBegin; 10040df0e737SMichael Lange PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 10050c86c063SLisandro Dalcin PetscValidHeaderSpecific(dmParallel, DM_CLASSID, 3); 10060df0e737SMichael Lange 10070df0e737SMichael Lange ierr = PetscObjectGetComm((PetscObject)dm, &comm);CHKERRQ(ierr); 10080df0e737SMichael Lange ierr = DMGetCoordinateSection(dm, &originalCoordSection);CHKERRQ(ierr); 10090df0e737SMichael Lange ierr = DMGetCoordinateSection(dmParallel, &newCoordSection);CHKERRQ(ierr); 10100df0e737SMichael Lange ierr = DMGetCoordinatesLocal(dm, &originalCoordinates);CHKERRQ(ierr); 10110df0e737SMichael Lange if (originalCoordinates) { 10128b9ced59SLisandro Dalcin ierr = VecCreate(PETSC_COMM_SELF, &newCoordinates);CHKERRQ(ierr); 10130df0e737SMichael Lange ierr = PetscObjectGetName((PetscObject) originalCoordinates, &name);CHKERRQ(ierr); 10140df0e737SMichael Lange ierr = PetscObjectSetName((PetscObject) newCoordinates, name);CHKERRQ(ierr); 10150df0e737SMichael Lange 10160df0e737SMichael Lange ierr = DMPlexDistributeField(dm, migrationSF, originalCoordSection, originalCoordinates, newCoordSection, newCoordinates);CHKERRQ(ierr); 10170df0e737SMichael Lange ierr = DMSetCoordinatesLocal(dmParallel, newCoordinates);CHKERRQ(ierr); 10180df0e737SMichael Lange ierr = VecGetBlockSize(originalCoordinates, &bs);CHKERRQ(ierr); 10190df0e737SMichael Lange ierr = VecSetBlockSize(newCoordinates, bs);CHKERRQ(ierr); 10200df0e737SMichael Lange ierr = VecDestroy(&newCoordinates);CHKERRQ(ierr); 10210df0e737SMichael Lange } 102290b157c4SStefano Zampini ierr = DMGetPeriodicity(dm, &isper, &maxCell, &L, &bd);CHKERRQ(ierr); 102390b157c4SStefano Zampini ierr = DMSetPeriodicity(dmParallel, isper, maxCell, L, bd);CHKERRQ(ierr); 10240df0e737SMichael Lange PetscFunctionReturn(0); 10250df0e737SMichael Lange } 10260df0e737SMichael Lange 102724cc2ca5SMatthew G. Knepley static PetscErrorCode DMPlexDistributeLabels(DM dm, PetscSF migrationSF, DM dmParallel) 10280df0e737SMichael Lange { 1029df0420ecSMatthew G. Knepley DM_Plex *mesh = (DM_Plex*) dm->data; 10300df0e737SMichael Lange MPI_Comm comm; 10317980c9d4SMatthew G. Knepley DMLabel depthLabel; 10320df0e737SMichael Lange PetscMPIInt rank; 10337980c9d4SMatthew G. Knepley PetscInt depth, d, numLabels, numLocalLabels, l; 1034df0420ecSMatthew G. Knepley PetscBool hasLabels = PETSC_FALSE, lsendDepth, sendDepth; 1035df0420ecSMatthew G. Knepley PetscObjectState depthState = -1; 10360df0e737SMichael Lange PetscErrorCode ierr; 10370df0e737SMichael Lange 10380df0e737SMichael Lange PetscFunctionBegin; 10390df0e737SMichael Lange PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 10400c86c063SLisandro Dalcin PetscValidHeaderSpecific(dmParallel, DM_CLASSID, 3); 10410c86c063SLisandro Dalcin 10420df0e737SMichael Lange ierr = PetscLogEventBegin(DMPLEX_DistributeLabels,dm,0,0,0);CHKERRQ(ierr); 10430df0e737SMichael Lange ierr = PetscObjectGetComm((PetscObject)dm, &comm);CHKERRQ(ierr); 10440df0e737SMichael Lange ierr = MPI_Comm_rank(comm, &rank);CHKERRQ(ierr); 10450df0e737SMichael Lange 1046df0420ecSMatthew G. Knepley /* If the user has changed the depth label, communicate it instead */ 10477980c9d4SMatthew G. Knepley ierr = DMPlexGetDepth(dm, &depth);CHKERRQ(ierr); 10487980c9d4SMatthew G. Knepley ierr = DMPlexGetDepthLabel(dm, &depthLabel);CHKERRQ(ierr); 1049d67d17b1SMatthew G. Knepley if (depthLabel) {ierr = PetscObjectStateGet((PetscObject) depthLabel, &depthState);CHKERRQ(ierr);} 1050df0420ecSMatthew G. Knepley lsendDepth = mesh->depthState != depthState ? PETSC_TRUE : PETSC_FALSE; 1051b2566f29SBarry Smith ierr = MPIU_Allreduce(&lsendDepth, &sendDepth, 1, MPIU_BOOL, MPI_LOR, comm);CHKERRQ(ierr); 1052df0420ecSMatthew G. Knepley if (sendDepth) { 1053a7998027SVaclav Hapla ierr = DMPlexGetDepthLabel(dmParallel, &dmParallel->depthLabel);CHKERRQ(ierr); 1054a7998027SVaclav Hapla ierr = DMRemoveLabelBySelf(dmParallel, &dmParallel->depthLabel, PETSC_FALSE);CHKERRQ(ierr); 1055df0420ecSMatthew G. Knepley } 1056d995df53SMatthew G. Knepley /* Everyone must have either the same number of labels, or none */ 1057c58f1c22SToby Isaac ierr = DMGetNumLabels(dm, &numLocalLabels);CHKERRQ(ierr); 1058d995df53SMatthew G. Knepley numLabels = numLocalLabels; 10590df0e737SMichael Lange ierr = MPI_Bcast(&numLabels, 1, MPIU_INT, 0, comm);CHKERRQ(ierr); 1060627847f0SMatthew G. Knepley if (numLabels == numLocalLabels) hasLabels = PETSC_TRUE; 10615d80c0bfSVaclav Hapla for (l = 0; l < numLabels; ++l) { 1062bdd2d751SMichael Lange DMLabel label = NULL, labelNew = NULL; 106383e10cb3SLisandro Dalcin PetscBool isDepth, lisOutput = PETSC_TRUE, isOutput; 1064d67d17b1SMatthew G. Knepley const char *name = NULL; 10650df0e737SMichael Lange 1066d67d17b1SMatthew G. Knepley if (hasLabels) { 1067d67d17b1SMatthew G. Knepley ierr = DMGetLabelByNum(dm, l, &label);CHKERRQ(ierr); 10680df0e737SMichael Lange /* Skip "depth" because it is recreated */ 1069d67d17b1SMatthew G. Knepley ierr = PetscObjectGetName((PetscObject) label, &name);CHKERRQ(ierr); 1070d67d17b1SMatthew G. Knepley ierr = PetscStrcmp(name, "depth", &isDepth);CHKERRQ(ierr); 1071d67d17b1SMatthew G. Knepley } 107283e10cb3SLisandro Dalcin ierr = MPI_Bcast(&isDepth, 1, MPIU_BOOL, 0, comm);CHKERRQ(ierr); 107383e10cb3SLisandro Dalcin if (isDepth && !sendDepth) continue; 1074bdd2d751SMichael Lange ierr = DMLabelDistribute(label, migrationSF, &labelNew);CHKERRQ(ierr); 107583e10cb3SLisandro Dalcin if (isDepth) { 10767980c9d4SMatthew G. Knepley /* Put in any missing strata which can occur if users are managing the depth label themselves */ 10777980c9d4SMatthew G. Knepley PetscInt gdepth; 10787980c9d4SMatthew G. Knepley 10797980c9d4SMatthew G. Knepley ierr = MPIU_Allreduce(&depth, &gdepth, 1, MPIU_INT, MPI_MAX, comm);CHKERRQ(ierr); 10807980c9d4SMatthew G. Knepley if ((depth >= 0) && (gdepth != depth)) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Inconsistent Plex depth %d != %d", depth, gdepth); 10817980c9d4SMatthew G. Knepley for (d = 0; d <= gdepth; ++d) { 10827980c9d4SMatthew G. Knepley PetscBool has; 10837980c9d4SMatthew G. Knepley 10847980c9d4SMatthew G. Knepley ierr = DMLabelHasStratum(labelNew, d, &has);CHKERRQ(ierr); 108583e10cb3SLisandro Dalcin if (!has) {ierr = DMLabelAddStratum(labelNew, d);CHKERRQ(ierr);} 10867980c9d4SMatthew G. Knepley } 10877980c9d4SMatthew G. Knepley } 1088c58f1c22SToby Isaac ierr = DMAddLabel(dmParallel, labelNew);CHKERRQ(ierr); 108983e10cb3SLisandro Dalcin /* Put the output flag in the new label */ 1090d67d17b1SMatthew G. Knepley if (hasLabels) {ierr = DMGetLabelOutput(dm, name, &lisOutput);CHKERRQ(ierr);} 109183e10cb3SLisandro Dalcin ierr = MPIU_Allreduce(&lisOutput, &isOutput, 1, MPIU_BOOL, MPI_LAND, comm);CHKERRQ(ierr); 1092d67d17b1SMatthew G. Knepley ierr = PetscObjectGetName((PetscObject) labelNew, &name);CHKERRQ(ierr); 1093d67d17b1SMatthew G. Knepley ierr = DMSetLabelOutput(dmParallel, name, isOutput);CHKERRQ(ierr); 109408f633c4SVaclav Hapla ierr = DMLabelDestroy(&labelNew);CHKERRQ(ierr); 10950df0e737SMichael Lange } 10960df0e737SMichael Lange ierr = PetscLogEventEnd(DMPLEX_DistributeLabels,dm,0,0,0);CHKERRQ(ierr); 10970df0e737SMichael Lange PetscFunctionReturn(0); 10980df0e737SMichael Lange } 10990df0e737SMichael Lange 1100d80ece95SMatthew G. Knepley /* Set hybrid and ghost state of points */ 110124cc2ca5SMatthew G. Knepley static PetscErrorCode DMPlexDistributeSetupHybrid(DM dm, PetscSF migrationSF, ISLocalToGlobalMapping renumbering, DM dmParallel) 11029734c634SMichael Lange { 11039734c634SMichael Lange DM_Plex *mesh = (DM_Plex*) dm->data; 11049734c634SMichael Lange DM_Plex *pmesh = (DM_Plex*) (dmParallel)->data; 1105d80ece95SMatthew G. Knepley PetscInt *isHybrid, *isHybridParallel; /* 0 for normal, 1 for hybrid, 2 for ghost cell */ 1106f0e73a3dSToby Isaac PetscInt dim, depth, d; 1107d80ece95SMatthew G. Knepley PetscInt pStart, pEnd, pStartP, pEndP, gcStart, gcEnd; 11089734c634SMichael Lange PetscErrorCode ierr; 11099734c634SMichael Lange 11109734c634SMichael Lange PetscFunctionBegin; 11119734c634SMichael Lange PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 11120c86c063SLisandro Dalcin PetscValidHeaderSpecific(dmParallel, DM_CLASSID, 3); 11139734c634SMichael Lange 11149734c634SMichael Lange ierr = DMGetDimension(dm, &dim);CHKERRQ(ierr); 11159734c634SMichael Lange ierr = DMPlexGetDepth(dm, &depth);CHKERRQ(ierr); 1116f0e73a3dSToby Isaac ierr = DMPlexGetChart(dm,&pStart,&pEnd);CHKERRQ(ierr); 1117f0e73a3dSToby Isaac ierr = DMPlexGetChart(dmParallel,&pStartP,&pEndP);CHKERRQ(ierr); 1118d80ece95SMatthew G. Knepley ierr = DMPlexGetGhostCellStratum(dm, &gcStart, &gcEnd);CHKERRQ(ierr); 1119f0e73a3dSToby Isaac ierr = PetscCalloc2(pEnd-pStart,&isHybrid,pEndP-pStartP,&isHybridParallel);CHKERRQ(ierr); 1120f0e73a3dSToby Isaac for (d = 0; d <= depth; d++) { 1121d80ece95SMatthew G. Knepley PetscInt hybridMax = (depth == 1 && d == 1) ? mesh->hybridPointMax[dim] : mesh->hybridPointMax[d], p; 11229734c634SMichael Lange 1123f0e73a3dSToby Isaac if (hybridMax >= 0) { 1124d80ece95SMatthew G. Knepley PetscInt sStart, sEnd; 11259734c634SMichael Lange 1126f0e73a3dSToby Isaac ierr = DMPlexGetDepthStratum(dm,d,&sStart,&sEnd);CHKERRQ(ierr); 1127d80ece95SMatthew G. Knepley for (p = hybridMax; p < sEnd; p++) isHybrid[p-pStart] = 1; 11289734c634SMichael Lange } 1129d80ece95SMatthew G. Knepley if (d == depth) for (p = gcStart; p < gcEnd; ++p) isHybrid[p-pStart] = 2; 11309734c634SMichael Lange } 1131d80ece95SMatthew G. Knepley ierr = PetscSFBcastBegin(migrationSF,MPIU_INT,isHybrid,isHybridParallel);CHKERRQ(ierr); 1132d80ece95SMatthew G. Knepley ierr = PetscSFBcastEnd(migrationSF,MPIU_INT,isHybrid,isHybridParallel);CHKERRQ(ierr); 1133f0e73a3dSToby Isaac for (d = 0; d <= dim; d++) pmesh->hybridPointMax[d] = -1; 1134f0e73a3dSToby Isaac for (d = 0; d <= depth; d++) { 1135f0e73a3dSToby Isaac PetscInt sStart, sEnd, p, dd; 1136f0e73a3dSToby Isaac 1137f0e73a3dSToby Isaac ierr = DMPlexGetDepthStratum(dmParallel,d,&sStart,&sEnd);CHKERRQ(ierr); 1138f0e73a3dSToby Isaac dd = (depth == 1 && d == 1) ? dim : d; 1139f0e73a3dSToby Isaac for (p = sStart; p < sEnd; p++) { 1140d80ece95SMatthew G. Knepley if (isHybridParallel[p-pStartP] == 1) { 1141f0e73a3dSToby Isaac pmesh->hybridPointMax[dd] = p; 1142f0e73a3dSToby Isaac break; 1143f0e73a3dSToby Isaac } 1144d80ece95SMatthew G. Knepley if (d == depth && isHybridParallel[p-pStartP] == 2) { 1145d80ece95SMatthew G. Knepley ierr = DMPlexSetGhostCellStratum(dmParallel, p, PETSC_DETERMINE);CHKERRQ(ierr); 1146d80ece95SMatthew G. Knepley break; 1147d80ece95SMatthew G. Knepley } 1148f0e73a3dSToby Isaac } 1149f0e73a3dSToby Isaac } 1150f0e73a3dSToby Isaac ierr = PetscFree2(isHybrid,isHybridParallel);CHKERRQ(ierr); 11519734c634SMichael Lange PetscFunctionReturn(0); 11529734c634SMichael Lange } 11530df0e737SMichael Lange 115424cc2ca5SMatthew G. Knepley static PetscErrorCode DMPlexDistributeSetupTree(DM dm, PetscSF migrationSF, ISLocalToGlobalMapping original, ISLocalToGlobalMapping renumbering, DM dmParallel) 1155a6f36705SMichael Lange { 115615078cd4SMichael Lange DM_Plex *mesh = (DM_Plex*) dm->data; 115715078cd4SMichael Lange DM_Plex *pmesh = (DM_Plex*) (dmParallel)->data; 1158a6f36705SMichael Lange MPI_Comm comm; 1159a6f36705SMichael Lange DM refTree; 1160a6f36705SMichael Lange PetscSection origParentSection, newParentSection; 1161a6f36705SMichael Lange PetscInt *origParents, *origChildIDs; 1162a6f36705SMichael Lange PetscBool flg; 1163a6f36705SMichael Lange PetscErrorCode ierr; 1164a6f36705SMichael Lange 1165a6f36705SMichael Lange PetscFunctionBegin; 1166a6f36705SMichael Lange PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 11670c86c063SLisandro Dalcin PetscValidHeaderSpecific(dmParallel, DM_CLASSID, 5); 1168a6f36705SMichael Lange ierr = PetscObjectGetComm((PetscObject)dm, &comm);CHKERRQ(ierr); 1169a6f36705SMichael Lange 1170a6f36705SMichael Lange /* Set up tree */ 1171a6f36705SMichael Lange ierr = DMPlexGetReferenceTree(dm,&refTree);CHKERRQ(ierr); 1172a6f36705SMichael Lange ierr = DMPlexSetReferenceTree(dmParallel,refTree);CHKERRQ(ierr); 1173a6f36705SMichael Lange ierr = DMPlexGetTree(dm,&origParentSection,&origParents,&origChildIDs,NULL,NULL);CHKERRQ(ierr); 1174a6f36705SMichael Lange if (origParentSection) { 1175a6f36705SMichael Lange PetscInt pStart, pEnd; 117608633170SToby Isaac PetscInt *newParents, *newChildIDs, *globParents; 1177a6f36705SMichael Lange PetscInt *remoteOffsetsParents, newParentSize; 1178a6f36705SMichael Lange PetscSF parentSF; 1179a6f36705SMichael Lange 1180a6f36705SMichael Lange ierr = DMPlexGetChart(dmParallel, &pStart, &pEnd);CHKERRQ(ierr); 1181a6f36705SMichael Lange ierr = PetscSectionCreate(PetscObjectComm((PetscObject)dmParallel),&newParentSection);CHKERRQ(ierr); 1182a6f36705SMichael Lange ierr = PetscSectionSetChart(newParentSection,pStart,pEnd);CHKERRQ(ierr); 1183a6f36705SMichael Lange ierr = PetscSFDistributeSection(migrationSF, origParentSection, &remoteOffsetsParents, newParentSection);CHKERRQ(ierr); 1184a6f36705SMichael Lange ierr = PetscSFCreateSectionSF(migrationSF, origParentSection, remoteOffsetsParents, newParentSection, &parentSF);CHKERRQ(ierr); 11858a713f3bSLawrence Mitchell ierr = PetscFree(remoteOffsetsParents);CHKERRQ(ierr); 1186a6f36705SMichael Lange ierr = PetscSectionGetStorageSize(newParentSection,&newParentSize);CHKERRQ(ierr); 1187a6f36705SMichael Lange ierr = PetscMalloc2(newParentSize,&newParents,newParentSize,&newChildIDs);CHKERRQ(ierr); 118808633170SToby Isaac if (original) { 118908633170SToby Isaac PetscInt numParents; 119008633170SToby Isaac 119108633170SToby Isaac ierr = PetscSectionGetStorageSize(origParentSection,&numParents);CHKERRQ(ierr); 119208633170SToby Isaac ierr = PetscMalloc1(numParents,&globParents);CHKERRQ(ierr); 119308633170SToby Isaac ierr = ISLocalToGlobalMappingApplyBlock(original, numParents, origParents, globParents);CHKERRQ(ierr); 119408633170SToby Isaac } 119508633170SToby Isaac else { 119608633170SToby Isaac globParents = origParents; 119708633170SToby Isaac } 119808633170SToby Isaac ierr = PetscSFBcastBegin(parentSF, MPIU_INT, globParents, newParents);CHKERRQ(ierr); 119908633170SToby Isaac ierr = PetscSFBcastEnd(parentSF, MPIU_INT, globParents, newParents);CHKERRQ(ierr); 120008633170SToby Isaac if (original) { 120108633170SToby Isaac ierr = PetscFree(globParents);CHKERRQ(ierr); 120208633170SToby Isaac } 1203a6f36705SMichael Lange ierr = PetscSFBcastBegin(parentSF, MPIU_INT, origChildIDs, newChildIDs);CHKERRQ(ierr); 1204a6f36705SMichael Lange ierr = PetscSFBcastEnd(parentSF, MPIU_INT, origChildIDs, newChildIDs);CHKERRQ(ierr); 1205a6f36705SMichael Lange ierr = ISGlobalToLocalMappingApplyBlock(renumbering,IS_GTOLM_MASK, newParentSize, newParents, NULL, newParents);CHKERRQ(ierr); 120662795ce3SStefano Zampini #if defined(PETSC_USE_DEBUG) 12074a54e071SToby Isaac { 12084a54e071SToby Isaac PetscInt p; 12094a54e071SToby Isaac PetscBool valid = PETSC_TRUE; 12104a54e071SToby Isaac for (p = 0; p < newParentSize; ++p) { 12114a54e071SToby Isaac if (newParents[p] < 0) {valid = PETSC_FALSE; ierr = PetscPrintf(PETSC_COMM_SELF, "Point %d not in overlap SF\n", p);CHKERRQ(ierr);} 12124a54e071SToby Isaac } 12134a54e071SToby Isaac if (!valid) SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Invalid global to local map"); 12144a54e071SToby Isaac } 12154a54e071SToby Isaac #endif 1216c5929fdfSBarry Smith ierr = PetscOptionsHasName(((PetscObject) dm)->options,((PetscObject) dm)->prefix, "-parents_view", &flg);CHKERRQ(ierr); 1217a6f36705SMichael Lange if (flg) { 1218a6f36705SMichael Lange ierr = PetscPrintf(comm, "Serial Parent Section: \n");CHKERRQ(ierr); 1219a8c5bd36SStefano Zampini ierr = PetscSectionView(origParentSection, PETSC_VIEWER_STDOUT_(comm));CHKERRQ(ierr); 1220a6f36705SMichael Lange ierr = PetscPrintf(comm, "Parallel Parent Section: \n");CHKERRQ(ierr); 1221a8c5bd36SStefano Zampini ierr = PetscSectionView(newParentSection, PETSC_VIEWER_STDOUT_(comm));CHKERRQ(ierr); 1222a6f36705SMichael Lange ierr = PetscSFView(parentSF, NULL);CHKERRQ(ierr); 1223a6f36705SMichael Lange } 1224a6f36705SMichael Lange ierr = DMPlexSetTree(dmParallel,newParentSection,newParents,newChildIDs);CHKERRQ(ierr); 1225a6f36705SMichael Lange ierr = PetscSectionDestroy(&newParentSection);CHKERRQ(ierr); 1226a6f36705SMichael Lange ierr = PetscFree2(newParents,newChildIDs);CHKERRQ(ierr); 1227a6f36705SMichael Lange ierr = PetscSFDestroy(&parentSF);CHKERRQ(ierr); 1228a6f36705SMichael Lange } 122915078cd4SMichael Lange pmesh->useAnchors = mesh->useAnchors; 1230a6f36705SMichael Lange PetscFunctionReturn(0); 1231a6f36705SMichael Lange } 12320df0e737SMichael Lange 123324cc2ca5SMatthew G. Knepley PETSC_UNUSED static PetscErrorCode DMPlexDistributeSF(DM dm, PetscSF migrationSF, DM dmParallel) 12344eca1733SMichael Lange { 12359852e123SBarry Smith PetscMPIInt rank, size; 12364eca1733SMichael Lange MPI_Comm comm; 12374eca1733SMichael Lange PetscErrorCode ierr; 12384eca1733SMichael Lange 12394eca1733SMichael Lange PetscFunctionBegin; 12404eca1733SMichael Lange PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 12410c86c063SLisandro Dalcin PetscValidHeaderSpecific(dmParallel, DM_CLASSID, 3); 12424eca1733SMichael Lange 12434eca1733SMichael Lange /* Create point SF for parallel mesh */ 12444eca1733SMichael Lange ierr = PetscLogEventBegin(DMPLEX_DistributeSF,dm,0,0,0);CHKERRQ(ierr); 12454eca1733SMichael Lange ierr = PetscObjectGetComm((PetscObject)dm, &comm);CHKERRQ(ierr); 12464eca1733SMichael Lange ierr = MPI_Comm_rank(comm, &rank);CHKERRQ(ierr); 12479852e123SBarry Smith ierr = MPI_Comm_size(comm, &size);CHKERRQ(ierr); 12484eca1733SMichael Lange { 12494eca1733SMichael Lange const PetscInt *leaves; 12504eca1733SMichael Lange PetscSFNode *remotePoints, *rowners, *lowners; 12514eca1733SMichael Lange PetscInt numRoots, numLeaves, numGhostPoints = 0, p, gp, *ghostPoints; 12524eca1733SMichael Lange PetscInt pStart, pEnd; 12534eca1733SMichael Lange 12544eca1733SMichael Lange ierr = DMPlexGetChart(dmParallel, &pStart, &pEnd);CHKERRQ(ierr); 12554eca1733SMichael Lange ierr = PetscSFGetGraph(migrationSF, &numRoots, &numLeaves, &leaves, NULL);CHKERRQ(ierr); 12564eca1733SMichael Lange ierr = PetscMalloc2(numRoots,&rowners,numLeaves,&lowners);CHKERRQ(ierr); 12574eca1733SMichael Lange for (p=0; p<numRoots; p++) { 12584eca1733SMichael Lange rowners[p].rank = -1; 12594eca1733SMichael Lange rowners[p].index = -1; 12604eca1733SMichael Lange } 12614eca1733SMichael Lange ierr = PetscSFBcastBegin(migrationSF, MPIU_2INT, rowners, lowners);CHKERRQ(ierr); 12624eca1733SMichael Lange ierr = PetscSFBcastEnd(migrationSF, MPIU_2INT, rowners, lowners);CHKERRQ(ierr); 12634eca1733SMichael Lange for (p = 0; p < numLeaves; ++p) { 12644eca1733SMichael Lange if (lowners[p].rank < 0 || lowners[p].rank == rank) { /* Either put in a bid or we know we own it */ 12654eca1733SMichael Lange lowners[p].rank = rank; 12664eca1733SMichael Lange lowners[p].index = leaves ? leaves[p] : p; 12674eca1733SMichael Lange } else if (lowners[p].rank >= 0) { /* Point already claimed so flag so that MAXLOC does not listen to us */ 12684eca1733SMichael Lange lowners[p].rank = -2; 12694eca1733SMichael Lange lowners[p].index = -2; 12704eca1733SMichael Lange } 12714eca1733SMichael Lange } 12724eca1733SMichael Lange for (p=0; p<numRoots; p++) { /* Root must not participate in the rediction, flag so that MAXLOC does not use */ 12734eca1733SMichael Lange rowners[p].rank = -3; 12744eca1733SMichael Lange rowners[p].index = -3; 12754eca1733SMichael Lange } 12764eca1733SMichael Lange ierr = PetscSFReduceBegin(migrationSF, MPIU_2INT, lowners, rowners, MPI_MAXLOC);CHKERRQ(ierr); 12774eca1733SMichael Lange ierr = PetscSFReduceEnd(migrationSF, MPIU_2INT, lowners, rowners, MPI_MAXLOC);CHKERRQ(ierr); 12784eca1733SMichael Lange ierr = PetscSFBcastBegin(migrationSF, MPIU_2INT, rowners, lowners);CHKERRQ(ierr); 12794eca1733SMichael Lange ierr = PetscSFBcastEnd(migrationSF, MPIU_2INT, rowners, lowners);CHKERRQ(ierr); 12804eca1733SMichael Lange for (p = 0; p < numLeaves; ++p) { 12814eca1733SMichael Lange if (lowners[p].rank < 0 || lowners[p].index < 0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Cell partition corrupt: point not claimed"); 12824eca1733SMichael Lange if (lowners[p].rank != rank) ++numGhostPoints; 12834eca1733SMichael Lange } 12844eca1733SMichael Lange ierr = PetscMalloc1(numGhostPoints, &ghostPoints);CHKERRQ(ierr); 12854eca1733SMichael Lange ierr = PetscMalloc1(numGhostPoints, &remotePoints);CHKERRQ(ierr); 12864eca1733SMichael Lange for (p = 0, gp = 0; p < numLeaves; ++p) { 12874eca1733SMichael Lange if (lowners[p].rank != rank) { 12884eca1733SMichael Lange ghostPoints[gp] = leaves ? leaves[p] : p; 12894eca1733SMichael Lange remotePoints[gp].rank = lowners[p].rank; 12904eca1733SMichael Lange remotePoints[gp].index = lowners[p].index; 12914eca1733SMichael Lange ++gp; 12924eca1733SMichael Lange } 12934eca1733SMichael Lange } 12944eca1733SMichael Lange ierr = PetscFree2(rowners,lowners);CHKERRQ(ierr); 12954eca1733SMichael Lange ierr = PetscSFSetGraph((dmParallel)->sf, pEnd - pStart, numGhostPoints, ghostPoints, PETSC_OWN_POINTER, remotePoints, PETSC_OWN_POINTER);CHKERRQ(ierr); 12964eca1733SMichael Lange ierr = PetscSFSetFromOptions((dmParallel)->sf);CHKERRQ(ierr); 12974eca1733SMichael Lange } 12981cf84007SMatthew G. Knepley { 12991cf84007SMatthew G. Knepley PetscBool useCone, useClosure, useAnchors; 13001cf84007SMatthew G. Knepley 1301b0441da4SMatthew G. Knepley ierr = DMGetBasicAdjacency(dm, &useCone, &useClosure);CHKERRQ(ierr); 1302b0441da4SMatthew G. Knepley ierr = DMSetBasicAdjacency(dmParallel, useCone, useClosure);CHKERRQ(ierr); 13031cf84007SMatthew G. Knepley ierr = DMPlexGetAdjacencyUseAnchors(dm, &useAnchors);CHKERRQ(ierr); 13041cf84007SMatthew G. Knepley ierr = DMPlexSetAdjacencyUseAnchors(dmParallel, useAnchors);CHKERRQ(ierr); 13051cf84007SMatthew G. Knepley } 13064eca1733SMichael Lange ierr = PetscLogEventEnd(DMPLEX_DistributeSF,dm,0,0,0);CHKERRQ(ierr); 13074eca1733SMichael Lange PetscFunctionReturn(0); 13084eca1733SMichael Lange } 13094eca1733SMichael Lange 131098ba2d7fSLawrence Mitchell /*@ 131198ba2d7fSLawrence Mitchell DMPlexSetPartitionBalance - Should distribution of the DM attempt to balance the shared point partition? 131298ba2d7fSLawrence Mitchell 131398ba2d7fSLawrence Mitchell Input Parameters: 131498ba2d7fSLawrence Mitchell + dm - The DMPlex object 131598ba2d7fSLawrence Mitchell - flg - Balance the partition? 131698ba2d7fSLawrence Mitchell 131798ba2d7fSLawrence Mitchell Level: intermediate 131898ba2d7fSLawrence Mitchell 131998ba2d7fSLawrence Mitchell .seealso: DMPlexDistribute(), DMPlexGetPartitionBalance() 132098ba2d7fSLawrence Mitchell @*/ 132198ba2d7fSLawrence Mitchell PetscErrorCode DMPlexSetPartitionBalance(DM dm, PetscBool flg) 132298ba2d7fSLawrence Mitchell { 132398ba2d7fSLawrence Mitchell DM_Plex *mesh = (DM_Plex *)dm->data; 132498ba2d7fSLawrence Mitchell 132598ba2d7fSLawrence Mitchell PetscFunctionBegin; 132698ba2d7fSLawrence Mitchell mesh->partitionBalance = flg; 132798ba2d7fSLawrence Mitchell PetscFunctionReturn(0); 132898ba2d7fSLawrence Mitchell } 132998ba2d7fSLawrence Mitchell 133098ba2d7fSLawrence Mitchell /*@ 133198ba2d7fSLawrence Mitchell DMPlexGetPartitionBalance - Does distribution of the DM attempt to balance the shared point partition? 133298ba2d7fSLawrence Mitchell 133398ba2d7fSLawrence Mitchell Input Parameter: 1334a2b725a8SWilliam Gropp . dm - The DMPlex object 133598ba2d7fSLawrence Mitchell 133698ba2d7fSLawrence Mitchell Output Parameter: 1337a2b725a8SWilliam Gropp . flg - Balance the partition? 133898ba2d7fSLawrence Mitchell 133998ba2d7fSLawrence Mitchell Level: intermediate 134098ba2d7fSLawrence Mitchell 134198ba2d7fSLawrence Mitchell .seealso: DMPlexDistribute(), DMPlexSetPartitionBalance() 134298ba2d7fSLawrence Mitchell @*/ 134398ba2d7fSLawrence Mitchell PetscErrorCode DMPlexGetPartitionBalance(DM dm, PetscBool *flg) 134498ba2d7fSLawrence Mitchell { 134598ba2d7fSLawrence Mitchell DM_Plex *mesh = (DM_Plex *)dm->data; 134698ba2d7fSLawrence Mitchell 134798ba2d7fSLawrence Mitchell PetscFunctionBegin; 134898ba2d7fSLawrence Mitchell PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 1349534a8f05SLisandro Dalcin PetscValidBoolPointer(flg, 2); 135098ba2d7fSLawrence Mitchell *flg = mesh->partitionBalance; 135198ba2d7fSLawrence Mitchell PetscFunctionReturn(0); 135298ba2d7fSLawrence Mitchell } 135398ba2d7fSLawrence Mitchell 1354fc02256fSLawrence Mitchell typedef struct { 1355fc02256fSLawrence Mitchell PetscInt vote, rank, index; 1356fc02256fSLawrence Mitchell } Petsc3Int; 1357fc02256fSLawrence Mitchell 1358fc02256fSLawrence Mitchell /* MaxLoc, but carry a third piece of information around */ 1359fc02256fSLawrence Mitchell static void MaxLocCarry(void *in_, void *inout_, PetscMPIInt *len_, MPI_Datatype *dtype) 1360fc02256fSLawrence Mitchell { 1361fc02256fSLawrence Mitchell Petsc3Int *a = (Petsc3Int *)inout_; 1362fc02256fSLawrence Mitchell Petsc3Int *b = (Petsc3Int *)in_; 1363fc02256fSLawrence Mitchell PetscInt i, len = *len_; 1364fc02256fSLawrence Mitchell for (i = 0; i < len; i++) { 1365fc02256fSLawrence Mitchell if (a[i].vote < b[i].vote) { 1366fc02256fSLawrence Mitchell a[i].vote = b[i].vote; 1367fc02256fSLawrence Mitchell a[i].rank = b[i].rank; 1368fc02256fSLawrence Mitchell a[i].index = b[i].index; 1369fc02256fSLawrence Mitchell } else if (a[i].vote <= b[i].vote) { 1370fc02256fSLawrence Mitchell if (a[i].rank >= b[i].rank) { 1371fc02256fSLawrence Mitchell a[i].rank = b[i].rank; 1372fc02256fSLawrence Mitchell a[i].index = b[i].index; 1373fc02256fSLawrence Mitchell } 1374fc02256fSLawrence Mitchell } 1375fc02256fSLawrence Mitchell } 1376fc02256fSLawrence Mitchell } 1377fc02256fSLawrence Mitchell 1378f5bf2dbfSMichael Lange /*@C 1379a8c5bd36SStefano Zampini DMPlexCreatePointSF - Build a point SF from an SF describing a point migration 1380f5bf2dbfSMichael Lange 1381f5bf2dbfSMichael Lange Input Parameter: 1382f5bf2dbfSMichael Lange + dm - The source DMPlex object 1383f5bf2dbfSMichael Lange . migrationSF - The star forest that describes the parallel point remapping 13841627f6ccSMichael Lange . ownership - Flag causing a vote to determine point ownership 1385f5bf2dbfSMichael Lange 1386f5bf2dbfSMichael Lange Output Parameter: 1387f5bf2dbfSMichael Lange - pointSF - The star forest describing the point overlap in the remapped DM 1388f5bf2dbfSMichael Lange 1389f5bf2dbfSMichael Lange Level: developer 1390f5bf2dbfSMichael Lange 1391f5bf2dbfSMichael Lange .seealso: DMPlexDistribute(), DMPlexDistributeOverlap() 1392f5bf2dbfSMichael Lange @*/ 1393f5bf2dbfSMichael Lange PetscErrorCode DMPlexCreatePointSF(DM dm, PetscSF migrationSF, PetscBool ownership, PetscSF *pointSF) 1394f5bf2dbfSMichael Lange { 139523193802SMatthew G. Knepley PetscMPIInt rank, size; 13961627f6ccSMichael Lange PetscInt p, nroots, nleaves, idx, npointLeaves; 1397f5bf2dbfSMichael Lange PetscInt *pointLocal; 1398f5bf2dbfSMichael Lange const PetscInt *leaves; 1399f5bf2dbfSMichael Lange const PetscSFNode *roots; 1400f5bf2dbfSMichael Lange PetscSFNode *rootNodes, *leafNodes, *pointRemote; 140123193802SMatthew G. Knepley Vec shifts; 1402cae3e4f3SLawrence Mitchell const PetscInt numShifts = 13759; 140323193802SMatthew G. Knepley const PetscScalar *shift = NULL; 140423193802SMatthew G. Knepley const PetscBool shiftDebug = PETSC_FALSE; 140598ba2d7fSLawrence Mitchell PetscBool balance; 1406f5bf2dbfSMichael Lange PetscErrorCode ierr; 1407f5bf2dbfSMichael Lange 1408f5bf2dbfSMichael Lange PetscFunctionBegin; 1409f5bf2dbfSMichael Lange PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 1410f5bf2dbfSMichael Lange ierr = MPI_Comm_rank(PetscObjectComm((PetscObject) dm), &rank);CHKERRQ(ierr); 1411ab0bc224SMatthew G. Knepley ierr = MPI_Comm_size(PetscObjectComm((PetscObject) dm), &size);CHKERRQ(ierr); 141230b0ce1bSStefano Zampini ierr = PetscLogEventBegin(DMPLEX_CreatePointSF,dm,0,0,0);CHKERRQ(ierr); 1413f5bf2dbfSMichael Lange 141498ba2d7fSLawrence Mitchell ierr = DMPlexGetPartitionBalance(dm, &balance);CHKERRQ(ierr); 1415f5bf2dbfSMichael Lange ierr = PetscSFGetGraph(migrationSF, &nroots, &nleaves, &leaves, &roots);CHKERRQ(ierr); 1416f5bf2dbfSMichael Lange ierr = PetscMalloc2(nroots, &rootNodes, nleaves, &leafNodes);CHKERRQ(ierr); 1417f5bf2dbfSMichael Lange if (ownership) { 1418fc02256fSLawrence Mitchell MPI_Op op; 1419fc02256fSLawrence Mitchell MPI_Datatype datatype; 1420fc02256fSLawrence Mitchell Petsc3Int *rootVote = NULL, *leafVote = NULL; 142123193802SMatthew G. Knepley /* If balancing, we compute a random cyclic shift of the rank for each remote point. That way, the max will evenly distribute among ranks. */ 142298ba2d7fSLawrence Mitchell if (balance) { 142323193802SMatthew G. Knepley PetscRandom r; 142423193802SMatthew G. Knepley 142523193802SMatthew G. Knepley ierr = PetscRandomCreate(PETSC_COMM_SELF, &r);CHKERRQ(ierr); 1426cae3e4f3SLawrence Mitchell ierr = PetscRandomSetInterval(r, 0, 2467*size);CHKERRQ(ierr); 142723193802SMatthew G. Knepley ierr = VecCreate(PETSC_COMM_SELF, &shifts);CHKERRQ(ierr); 142823193802SMatthew G. Knepley ierr = VecSetSizes(shifts, numShifts, numShifts);CHKERRQ(ierr); 142923193802SMatthew G. Knepley ierr = VecSetType(shifts, VECSTANDARD);CHKERRQ(ierr); 143023193802SMatthew G. Knepley ierr = VecSetRandom(shifts, r);CHKERRQ(ierr); 143123193802SMatthew G. Knepley ierr = PetscRandomDestroy(&r);CHKERRQ(ierr); 143223193802SMatthew G. Knepley ierr = VecGetArrayRead(shifts, &shift);CHKERRQ(ierr); 143323193802SMatthew G. Knepley } 143423193802SMatthew G. Knepley 1435fc02256fSLawrence Mitchell ierr = PetscMalloc1(nroots, &rootVote);CHKERRQ(ierr); 1436fc02256fSLawrence Mitchell ierr = PetscMalloc1(nleaves, &leafVote);CHKERRQ(ierr); 143723193802SMatthew G. Knepley /* Point ownership vote: Process with highest rank owns shared points */ 1438f5bf2dbfSMichael Lange for (p = 0; p < nleaves; ++p) { 143923193802SMatthew G. Knepley if (shiftDebug) { 1440e7bcd635SMatthew G. Knepley ierr = PetscSynchronizedPrintf(PetscObjectComm((PetscObject) dm), "[%d] Point %D RemotePoint %D Shift %D MyRank %D\n", rank, leaves ? leaves[p] : p, roots[p].index, (PetscInt) PetscRealPart(shift[roots[p].index%numShifts]), (rank + (shift ? (PetscInt) PetscRealPart(shift[roots[p].index%numShifts]) : 0))%size);CHKERRQ(ierr); 144123193802SMatthew G. Knepley } 1442f5bf2dbfSMichael Lange /* Either put in a bid or we know we own it */ 1443fc02256fSLawrence Mitchell leafVote[p].vote = (rank + (shift ? (PetscInt) PetscRealPart(shift[roots[p].index%numShifts]) : 0))%size; 1444fc02256fSLawrence Mitchell leafVote[p].rank = rank; 1445fc02256fSLawrence Mitchell leafVote[p].index = p; 1446f5bf2dbfSMichael Lange } 1447f5bf2dbfSMichael Lange for (p = 0; p < nroots; p++) { 14481627f6ccSMichael Lange /* Root must not participate in the reduction, flag so that MAXLOC does not use */ 1449fc02256fSLawrence Mitchell rootVote[p].vote = -3; 1450fc02256fSLawrence Mitchell rootVote[p].rank = -3; 1451fc02256fSLawrence Mitchell rootVote[p].index = -3; 1452f5bf2dbfSMichael Lange } 1453fc02256fSLawrence Mitchell ierr = MPI_Type_contiguous(3, MPIU_INT, &datatype);CHKERRQ(ierr); 1454fc02256fSLawrence Mitchell ierr = MPI_Type_commit(&datatype);CHKERRQ(ierr); 1455fc02256fSLawrence Mitchell ierr = MPI_Op_create(&MaxLocCarry, 1, &op);CHKERRQ(ierr); 1456fc02256fSLawrence Mitchell ierr = PetscSFReduceBegin(migrationSF, datatype, leafVote, rootVote, op);CHKERRQ(ierr); 1457fc02256fSLawrence Mitchell ierr = PetscSFReduceEnd(migrationSF, datatype, leafVote, rootVote, op);CHKERRQ(ierr); 1458fc02256fSLawrence Mitchell ierr = MPI_Op_free(&op);CHKERRQ(ierr); 1459fc02256fSLawrence Mitchell ierr = MPI_Type_free(&datatype);CHKERRQ(ierr); 1460c091126eSLawrence Mitchell for (p = 0; p < nroots; p++) { 1461fc02256fSLawrence Mitchell rootNodes[p].rank = rootVote[p].rank; 1462fc02256fSLawrence Mitchell rootNodes[p].index = rootVote[p].index; 1463c091126eSLawrence Mitchell } 1464fc02256fSLawrence Mitchell ierr = PetscFree(leafVote);CHKERRQ(ierr); 1465fc02256fSLawrence Mitchell ierr = PetscFree(rootVote);CHKERRQ(ierr); 1466f5bf2dbfSMichael Lange } else { 1467f5bf2dbfSMichael Lange for (p = 0; p < nroots; p++) { 1468f5bf2dbfSMichael Lange rootNodes[p].index = -1; 1469f5bf2dbfSMichael Lange rootNodes[p].rank = rank; 1470fc02256fSLawrence Mitchell } 1471f5bf2dbfSMichael Lange for (p = 0; p < nleaves; p++) { 1472f5bf2dbfSMichael Lange /* Write new local id into old location */ 1473f5bf2dbfSMichael Lange if (roots[p].rank == rank) { 14746462276dSToby Isaac rootNodes[roots[p].index].index = leaves ? leaves[p] : p; 1475f5bf2dbfSMichael Lange } 1476f5bf2dbfSMichael Lange } 1477f5bf2dbfSMichael Lange } 1478f5bf2dbfSMichael Lange ierr = PetscSFBcastBegin(migrationSF, MPIU_2INT, rootNodes, leafNodes);CHKERRQ(ierr); 1479f5bf2dbfSMichael Lange ierr = PetscSFBcastEnd(migrationSF, MPIU_2INT, rootNodes, leafNodes);CHKERRQ(ierr); 1480f5bf2dbfSMichael Lange 148123193802SMatthew G. Knepley for (npointLeaves = 0, p = 0; p < nleaves; p++) { 1482b0e1264bSMatthew G. Knepley if (leafNodes[p].rank != rank) npointLeaves++; 148323193802SMatthew G. Knepley } 14841627f6ccSMichael Lange ierr = PetscMalloc1(npointLeaves, &pointLocal);CHKERRQ(ierr); 14851627f6ccSMichael Lange ierr = PetscMalloc1(npointLeaves, &pointRemote);CHKERRQ(ierr); 1486f5bf2dbfSMichael Lange for (idx = 0, p = 0; p < nleaves; p++) { 1487b0e1264bSMatthew G. Knepley if (leafNodes[p].rank != rank) { 1488f5bf2dbfSMichael Lange pointLocal[idx] = p; 1489f5bf2dbfSMichael Lange pointRemote[idx] = leafNodes[p]; 1490f5bf2dbfSMichael Lange idx++; 1491f5bf2dbfSMichael Lange } 1492f5bf2dbfSMichael Lange } 149323193802SMatthew G. Knepley if (shift) { 149423193802SMatthew G. Knepley ierr = VecRestoreArrayRead(shifts, &shift);CHKERRQ(ierr); 149523193802SMatthew G. Knepley ierr = VecDestroy(&shifts);CHKERRQ(ierr); 149623193802SMatthew G. Knepley } 149723193802SMatthew G. Knepley if (shiftDebug) {ierr = PetscSynchronizedFlush(PetscObjectComm((PetscObject) dm), PETSC_STDOUT);CHKERRQ(ierr);} 1498f5bf2dbfSMichael Lange ierr = PetscSFCreate(PetscObjectComm((PetscObject) dm), pointSF);CHKERRQ(ierr); 14991627f6ccSMichael Lange ierr = PetscSFSetFromOptions(*pointSF);CHKERRQ(ierr); 1500f5bf2dbfSMichael Lange ierr = PetscSFSetGraph(*pointSF, nleaves, npointLeaves, pointLocal, PETSC_OWN_POINTER, pointRemote, PETSC_OWN_POINTER);CHKERRQ(ierr); 1501f5bf2dbfSMichael Lange ierr = PetscFree2(rootNodes, leafNodes);CHKERRQ(ierr); 150230b0ce1bSStefano Zampini ierr = PetscLogEventEnd(DMPLEX_CreatePointSF,dm,0,0,0);CHKERRQ(ierr); 1503f5bf2dbfSMichael Lange PetscFunctionReturn(0); 1504f5bf2dbfSMichael Lange } 1505f5bf2dbfSMichael Lange 150615078cd4SMichael Lange /*@C 150715078cd4SMichael Lange DMPlexMigrate - Migrates internal DM data over the supplied star forest 150815078cd4SMichael Lange 1509d083f849SBarry Smith Collective on dm 151083655b49SVáclav Hapla 151115078cd4SMichael Lange Input Parameter: 151215078cd4SMichael Lange + dm - The source DMPlex object 15131627f6ccSMichael Lange . sf - The star forest communication context describing the migration pattern 151415078cd4SMichael Lange 151515078cd4SMichael Lange Output Parameter: 151615078cd4SMichael Lange - targetDM - The target DMPlex object 151715078cd4SMichael Lange 1518b9f40539SMichael Lange Level: intermediate 151915078cd4SMichael Lange 152015078cd4SMichael Lange .seealso: DMPlexDistribute(), DMPlexDistributeOverlap() 152115078cd4SMichael Lange @*/ 1522b9f40539SMichael Lange PetscErrorCode DMPlexMigrate(DM dm, PetscSF sf, DM targetDM) 152315078cd4SMichael Lange { 1524b9f40539SMichael Lange MPI_Comm comm; 1525cc1750acSStefano Zampini PetscInt dim, cdim, nroots; 1526b9f40539SMichael Lange PetscSF sfPoint; 152715078cd4SMichael Lange ISLocalToGlobalMapping ltogMigration; 1528ac04eaf7SToby Isaac ISLocalToGlobalMapping ltogOriginal = NULL; 1529b9f40539SMichael Lange PetscBool flg; 153015078cd4SMichael Lange PetscErrorCode ierr; 153115078cd4SMichael Lange 153215078cd4SMichael Lange PetscFunctionBegin; 153315078cd4SMichael Lange PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 15341b858b30SMichael Lange ierr = PetscLogEventBegin(DMPLEX_Migrate, dm, 0, 0, 0);CHKERRQ(ierr); 1535b9f40539SMichael Lange ierr = PetscObjectGetComm((PetscObject) dm, &comm);CHKERRQ(ierr); 153615078cd4SMichael Lange ierr = DMGetDimension(dm, &dim);CHKERRQ(ierr); 153715078cd4SMichael Lange ierr = DMSetDimension(targetDM, dim);CHKERRQ(ierr); 1538cc1750acSStefano Zampini ierr = DMGetCoordinateDim(dm, &cdim);CHKERRQ(ierr); 1539cc1750acSStefano Zampini ierr = DMSetCoordinateDim(targetDM, cdim);CHKERRQ(ierr); 154015078cd4SMichael Lange 1541bfb0467fSMichael Lange /* Check for a one-to-all distribution pattern */ 1542b9f40539SMichael Lange ierr = DMGetPointSF(dm, &sfPoint);CHKERRQ(ierr); 1543b9f40539SMichael Lange ierr = PetscSFGetGraph(sfPoint, &nroots, NULL, NULL, NULL);CHKERRQ(ierr); 1544bfb0467fSMichael Lange if (nroots >= 0) { 1545b9f40539SMichael Lange IS isOriginal; 1546ac04eaf7SToby Isaac PetscInt n, size, nleaves; 1547ac04eaf7SToby Isaac PetscInt *numbering_orig, *numbering_new; 1548367003a6SStefano Zampini 1549b9f40539SMichael Lange /* Get the original point numbering */ 1550b9f40539SMichael Lange ierr = DMPlexCreatePointNumbering(dm, &isOriginal);CHKERRQ(ierr); 1551b9f40539SMichael Lange ierr = ISLocalToGlobalMappingCreateIS(isOriginal, <ogOriginal);CHKERRQ(ierr); 1552b9f40539SMichael Lange ierr = ISLocalToGlobalMappingGetSize(ltogOriginal, &size);CHKERRQ(ierr); 1553b9f40539SMichael Lange ierr = ISLocalToGlobalMappingGetBlockIndices(ltogOriginal, (const PetscInt**)&numbering_orig);CHKERRQ(ierr); 1554b9f40539SMichael Lange /* Convert to positive global numbers */ 1555b9f40539SMichael Lange for (n=0; n<size; n++) {if (numbering_orig[n] < 0) numbering_orig[n] = -(numbering_orig[n]+1);} 1556b9f40539SMichael Lange /* Derive the new local-to-global mapping from the old one */ 1557b9f40539SMichael Lange ierr = PetscSFGetGraph(sf, NULL, &nleaves, NULL, NULL);CHKERRQ(ierr); 1558b9f40539SMichael Lange ierr = PetscMalloc1(nleaves, &numbering_new);CHKERRQ(ierr); 15596e0288c8SStefano Zampini ierr = PetscSFBcastBegin(sf, MPIU_INT, numbering_orig, numbering_new);CHKERRQ(ierr); 15606e0288c8SStefano Zampini ierr = PetscSFBcastEnd(sf, MPIU_INT, numbering_orig, numbering_new);CHKERRQ(ierr); 15616e0288c8SStefano Zampini ierr = ISLocalToGlobalMappingCreate(comm, 1, nleaves, numbering_new, PETSC_OWN_POINTER, <ogMigration);CHKERRQ(ierr); 1562b9f40539SMichael Lange ierr = ISLocalToGlobalMappingRestoreIndices(ltogOriginal, (const PetscInt**)&numbering_orig);CHKERRQ(ierr); 1563b9f40539SMichael Lange ierr = ISDestroy(&isOriginal);CHKERRQ(ierr); 156415078cd4SMichael Lange } else { 1565bfb0467fSMichael Lange /* One-to-all distribution pattern: We can derive LToG from SF */ 156615078cd4SMichael Lange ierr = ISLocalToGlobalMappingCreateSF(sf, 0, <ogMigration);CHKERRQ(ierr); 156715078cd4SMichael Lange } 1568c5929fdfSBarry Smith ierr = PetscOptionsHasName(((PetscObject) dm)->options,((PetscObject) dm)->prefix, "-partition_view", &flg);CHKERRQ(ierr); 1569b9f40539SMichael Lange if (flg) { 1570b9f40539SMichael Lange ierr = PetscPrintf(comm, "Point renumbering for DM migration:\n");CHKERRQ(ierr); 1571b9f40539SMichael Lange ierr = ISLocalToGlobalMappingView(ltogMigration, NULL);CHKERRQ(ierr); 1572b9f40539SMichael Lange } 157315078cd4SMichael Lange /* Migrate DM data to target DM */ 1574ac04eaf7SToby Isaac ierr = DMPlexDistributeCones(dm, sf, ltogOriginal, ltogMigration, targetDM);CHKERRQ(ierr); 157515078cd4SMichael Lange ierr = DMPlexDistributeLabels(dm, sf, targetDM);CHKERRQ(ierr); 15760dc1530dSSander Arens ierr = DMPlexDistributeCoordinates(dm, sf, targetDM);CHKERRQ(ierr); 157715078cd4SMichael Lange ierr = DMPlexDistributeSetupHybrid(dm, sf, ltogMigration, targetDM);CHKERRQ(ierr); 157808633170SToby Isaac ierr = DMPlexDistributeSetupTree(dm, sf, ltogOriginal, ltogMigration, targetDM);CHKERRQ(ierr); 1579ac04eaf7SToby Isaac ierr = ISLocalToGlobalMappingDestroy(<ogOriginal);CHKERRQ(ierr); 1580302440fdSBarry Smith ierr = ISLocalToGlobalMappingDestroy(<ogMigration);CHKERRQ(ierr); 15811b858b30SMichael Lange ierr = PetscLogEventEnd(DMPLEX_Migrate, dm, 0, 0, 0);CHKERRQ(ierr); 158215078cd4SMichael Lange PetscFunctionReturn(0); 158315078cd4SMichael Lange } 158415078cd4SMichael Lange 15853b8f15a2SMatthew G. Knepley /*@C 158670034214SMatthew G. Knepley DMPlexDistribute - Distributes the mesh and any associated sections. 158770034214SMatthew G. Knepley 1588d083f849SBarry Smith Collective on dm 158970034214SMatthew G. Knepley 159070034214SMatthew G. Knepley Input Parameter: 159170034214SMatthew G. Knepley + dm - The original DMPlex object 159270034214SMatthew G. Knepley - overlap - The overlap of partitions, 0 is the default 159370034214SMatthew G. Knepley 159470034214SMatthew G. Knepley Output Parameter: 1595f4ae5380SJed Brown + sf - The PetscSF used for point distribution, or NULL if not needed 1596f4ae5380SJed Brown - dmParallel - The distributed DMPlex object 159770034214SMatthew G. Knepley 1598f4ae5380SJed Brown Note: If the mesh was not distributed, the output dmParallel will be NULL. 159970034214SMatthew G. Knepley 1600b0441da4SMatthew G. Knepley The user can control the definition of adjacency for the mesh using DMSetAdjacency(). They should choose the combination appropriate for the function 160170034214SMatthew G. Knepley representation on the mesh. 160270034214SMatthew G. Knepley 160370034214SMatthew G. Knepley Level: intermediate 160470034214SMatthew G. Knepley 1605cb54e036SVaclav Hapla .seealso: DMPlexCreate(), DMSetAdjacency(), DMPlexGetOverlap() 160670034214SMatthew G. Knepley @*/ 160780cf41d5SMatthew G. Knepley PetscErrorCode DMPlexDistribute(DM dm, PetscInt overlap, PetscSF *sf, DM *dmParallel) 160870034214SMatthew G. Knepley { 160970034214SMatthew G. Knepley MPI_Comm comm; 161015078cd4SMichael Lange PetscPartitioner partitioner; 1611f8987ae8SMichael Lange IS cellPart; 1612f8987ae8SMichael Lange PetscSection cellPartSection; 1613cf86098cSMatthew G. Knepley DM dmCoord; 1614f8987ae8SMichael Lange DMLabel lblPartition, lblMigration; 1615874ddda9SLisandro Dalcin PetscSF sfMigration, sfStratified, sfPoint; 161698ba2d7fSLawrence Mitchell PetscBool flg, balance; 1617874ddda9SLisandro Dalcin PetscMPIInt rank, size; 161870034214SMatthew G. Knepley PetscErrorCode ierr; 161970034214SMatthew G. Knepley 162070034214SMatthew G. Knepley PetscFunctionBegin; 162170034214SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 1622d5c515a1SMatthew G. Knepley PetscValidLogicalCollectiveInt(dm, overlap, 2); 1623d5c515a1SMatthew G. Knepley if (sf) PetscValidPointer(sf,3); 1624d5c515a1SMatthew G. Knepley PetscValidPointer(dmParallel,4); 162570034214SMatthew G. Knepley 16260c86c063SLisandro Dalcin if (sf) *sf = NULL; 16270c86c063SLisandro Dalcin *dmParallel = NULL; 162870034214SMatthew G. Knepley ierr = PetscObjectGetComm((PetscObject)dm,&comm);CHKERRQ(ierr); 162970034214SMatthew G. Knepley ierr = MPI_Comm_rank(comm, &rank);CHKERRQ(ierr); 16309852e123SBarry Smith ierr = MPI_Comm_size(comm, &size);CHKERRQ(ierr); 16310c86c063SLisandro Dalcin if (size == 1) PetscFunctionReturn(0); 163270034214SMatthew G. Knepley 16330c86c063SLisandro Dalcin ierr = PetscLogEventBegin(DMPLEX_Distribute,dm,0,0,0);CHKERRQ(ierr); 163415078cd4SMichael Lange /* Create cell partition */ 163567eb269bSLisandro Dalcin ierr = PetscLogEventBegin(DMPLEX_Partition,dm,0,0,0);CHKERRQ(ierr); 163677623264SMatthew G. Knepley ierr = PetscSectionCreate(comm, &cellPartSection);CHKERRQ(ierr); 163715078cd4SMichael Lange ierr = DMPlexGetPartitioner(dm, &partitioner);CHKERRQ(ierr); 163815078cd4SMichael Lange ierr = PetscPartitionerPartition(partitioner, dm, cellPartSection, &cellPart);CHKERRQ(ierr); 163930b0ce1bSStefano Zampini ierr = PetscLogEventBegin(DMPLEX_PartSelf,dm,0,0,0);CHKERRQ(ierr); 1640f8987ae8SMichael Lange { 1641f8987ae8SMichael Lange /* Convert partition to DMLabel */ 1642825f8a23SLisandro Dalcin IS is; 1643825f8a23SLisandro Dalcin PetscHSetI ht; 1644f8987ae8SMichael Lange const PetscInt *points; 16458e330a33SStefano Zampini PetscInt *iranks; 16468e330a33SStefano Zampini PetscInt pStart, pEnd, proc, npoints, poff = 0, nranks; 1647825f8a23SLisandro Dalcin 1648d67d17b1SMatthew G. Knepley ierr = DMLabelCreate(PETSC_COMM_SELF, "Point Partition", &lblPartition);CHKERRQ(ierr); 1649825f8a23SLisandro Dalcin /* Preallocate strata */ 1650825f8a23SLisandro Dalcin ierr = PetscHSetICreate(&ht);CHKERRQ(ierr); 1651825f8a23SLisandro Dalcin ierr = PetscSectionGetChart(cellPartSection, &pStart, &pEnd);CHKERRQ(ierr); 1652825f8a23SLisandro Dalcin for (proc = pStart; proc < pEnd; proc++) { 1653825f8a23SLisandro Dalcin ierr = PetscSectionGetDof(cellPartSection, proc, &npoints);CHKERRQ(ierr); 1654825f8a23SLisandro Dalcin if (npoints) {ierr = PetscHSetIAdd(ht, proc);CHKERRQ(ierr);} 1655825f8a23SLisandro Dalcin } 1656825f8a23SLisandro Dalcin ierr = PetscHSetIGetSize(ht, &nranks);CHKERRQ(ierr); 1657825f8a23SLisandro Dalcin ierr = PetscMalloc1(nranks, &iranks);CHKERRQ(ierr); 1658825f8a23SLisandro Dalcin ierr = PetscHSetIGetElems(ht, &poff, iranks);CHKERRQ(ierr); 1659825f8a23SLisandro Dalcin ierr = PetscHSetIDestroy(&ht);CHKERRQ(ierr); 1660825f8a23SLisandro Dalcin ierr = DMLabelAddStrata(lblPartition, nranks, iranks);CHKERRQ(ierr); 1661825f8a23SLisandro Dalcin ierr = PetscFree(iranks);CHKERRQ(ierr); 1662825f8a23SLisandro Dalcin /* Inline DMPlexPartitionLabelClosure() */ 1663f8987ae8SMichael Lange ierr = ISGetIndices(cellPart, &points);CHKERRQ(ierr); 1664f8987ae8SMichael Lange ierr = PetscSectionGetChart(cellPartSection, &pStart, &pEnd);CHKERRQ(ierr); 1665f8987ae8SMichael Lange for (proc = pStart; proc < pEnd; proc++) { 1666f8987ae8SMichael Lange ierr = PetscSectionGetDof(cellPartSection, proc, &npoints);CHKERRQ(ierr); 1667825f8a23SLisandro Dalcin if (!npoints) continue; 1668825f8a23SLisandro Dalcin ierr = PetscSectionGetOffset(cellPartSection, proc, &poff);CHKERRQ(ierr); 16698e330a33SStefano Zampini ierr = DMPlexClosurePoints_Private(dm, npoints, points+poff, &is);CHKERRQ(ierr); 1670825f8a23SLisandro Dalcin ierr = DMLabelSetStratumIS(lblPartition, proc, is);CHKERRQ(ierr); 1671825f8a23SLisandro Dalcin ierr = ISDestroy(&is);CHKERRQ(ierr); 1672f8987ae8SMichael Lange } 1673f8987ae8SMichael Lange ierr = ISRestoreIndices(cellPart, &points);CHKERRQ(ierr); 1674f8987ae8SMichael Lange } 167530b0ce1bSStefano Zampini ierr = PetscLogEventEnd(DMPLEX_PartSelf,dm,0,0,0);CHKERRQ(ierr); 16766e203dd9SStefano Zampini 1677d67d17b1SMatthew G. Knepley ierr = DMLabelCreate(PETSC_COMM_SELF, "Point migration", &lblMigration);CHKERRQ(ierr); 1678874ddda9SLisandro Dalcin ierr = DMPlexPartitionLabelInvert(dm, lblPartition, NULL, lblMigration);CHKERRQ(ierr); 1679302440fdSBarry Smith ierr = DMPlexPartitionLabelCreateSF(dm, lblMigration, &sfMigration);CHKERRQ(ierr); 168043f7d02bSMichael Lange ierr = DMPlexStratifyMigrationSF(dm, sfMigration, &sfStratified);CHKERRQ(ierr); 168143f7d02bSMichael Lange ierr = PetscSFDestroy(&sfMigration);CHKERRQ(ierr); 168243f7d02bSMichael Lange sfMigration = sfStratified; 168330b0ce1bSStefano Zampini ierr = PetscSFSetUp(sfMigration);CHKERRQ(ierr); 168467eb269bSLisandro Dalcin ierr = PetscLogEventEnd(DMPLEX_Partition,dm,0,0,0);CHKERRQ(ierr); 1685c5929fdfSBarry Smith ierr = PetscOptionsHasName(((PetscObject) dm)->options,((PetscObject) dm)->prefix, "-partition_view", &flg);CHKERRQ(ierr); 168670034214SMatthew G. Knepley if (flg) { 1687a8c5bd36SStefano Zampini ierr = DMLabelView(lblPartition, PETSC_VIEWER_STDOUT_(comm));CHKERRQ(ierr); 1688a8c5bd36SStefano Zampini ierr = PetscSFView(sfMigration, PETSC_VIEWER_STDOUT_(comm));CHKERRQ(ierr); 168970034214SMatthew G. Knepley } 1690f8987ae8SMichael Lange 169115078cd4SMichael Lange /* Create non-overlapping parallel DM and migrate internal data */ 169270034214SMatthew G. Knepley ierr = DMPlexCreate(comm, dmParallel);CHKERRQ(ierr); 169370034214SMatthew G. Knepley ierr = PetscObjectSetName((PetscObject) *dmParallel, "Parallel Mesh");CHKERRQ(ierr); 1694b9f40539SMichael Lange ierr = DMPlexMigrate(dm, sfMigration, *dmParallel);CHKERRQ(ierr); 169570034214SMatthew G. Knepley 1696a157612eSMichael Lange /* Build the point SF without overlap */ 169798ba2d7fSLawrence Mitchell ierr = DMPlexGetPartitionBalance(dm, &balance);CHKERRQ(ierr); 169898ba2d7fSLawrence Mitchell ierr = DMPlexSetPartitionBalance(*dmParallel, balance);CHKERRQ(ierr); 16991627f6ccSMichael Lange ierr = DMPlexCreatePointSF(*dmParallel, sfMigration, PETSC_TRUE, &sfPoint);CHKERRQ(ierr); 1700f5bf2dbfSMichael Lange ierr = DMSetPointSF(*dmParallel, sfPoint);CHKERRQ(ierr); 1701cf86098cSMatthew G. Knepley ierr = DMGetCoordinateDM(*dmParallel, &dmCoord);CHKERRQ(ierr); 1702cf86098cSMatthew G. Knepley if (dmCoord) {ierr = DMSetPointSF(dmCoord, sfPoint);CHKERRQ(ierr);} 1703a8c5bd36SStefano Zampini if (flg) {ierr = PetscSFView(sfPoint, NULL);CHKERRQ(ierr);} 170470034214SMatthew G. Knepley 1705a157612eSMichael Lange if (overlap > 0) { 170615078cd4SMichael Lange DM dmOverlap; 170757f290daSMatthew G. Knepley PetscInt nroots, nleaves, noldleaves, l; 170857f290daSMatthew G. Knepley const PetscInt *oldLeaves; 170957f290daSMatthew G. Knepley PetscSFNode *newRemote, *permRemote; 171015078cd4SMichael Lange const PetscSFNode *oldRemote; 171115078cd4SMichael Lange PetscSF sfOverlap, sfOverlapPoint; 1712524e35f8SStefano Zampini 1713a157612eSMichael Lange /* Add the partition overlap to the distributed DM */ 1714b9f40539SMichael Lange ierr = DMPlexDistributeOverlap(*dmParallel, overlap, &sfOverlap, &dmOverlap);CHKERRQ(ierr); 1715a157612eSMichael Lange ierr = DMDestroy(dmParallel);CHKERRQ(ierr); 1716a157612eSMichael Lange *dmParallel = dmOverlap; 1717c389ea9fSToby Isaac if (flg) { 17183d822a50SMichael Lange ierr = PetscPrintf(comm, "Overlap Migration SF:\n");CHKERRQ(ierr); 171915078cd4SMichael Lange ierr = PetscSFView(sfOverlap, NULL);CHKERRQ(ierr); 1720c389ea9fSToby Isaac } 172143331d4aSMichael Lange 1722f8987ae8SMichael Lange /* Re-map the migration SF to establish the full migration pattern */ 172357f290daSMatthew G. Knepley ierr = PetscSFGetGraph(sfMigration, &nroots, &noldleaves, &oldLeaves, &oldRemote);CHKERRQ(ierr); 172415078cd4SMichael Lange ierr = PetscSFGetGraph(sfOverlap, NULL, &nleaves, NULL, NULL);CHKERRQ(ierr); 172543331d4aSMichael Lange ierr = PetscMalloc1(nleaves, &newRemote);CHKERRQ(ierr); 172657f290daSMatthew G. Knepley /* oldRemote: original root point mapping to original leaf point 172757f290daSMatthew G. Knepley newRemote: original leaf point mapping to overlapped leaf point */ 172857f290daSMatthew G. Knepley if (oldLeaves) { 172973e69a6aSMatthew G. Knepley /* After stratification, the migration remotes may not be in root (canonical) order, so we reorder using the leaf numbering */ 173073e69a6aSMatthew G. Knepley ierr = PetscMalloc1(noldleaves, &permRemote);CHKERRQ(ierr); 173157f290daSMatthew G. Knepley for (l = 0; l < noldleaves; ++l) permRemote[oldLeaves[l]] = oldRemote[l]; 173257f290daSMatthew G. Knepley oldRemote = permRemote; 173357f290daSMatthew G. Knepley } 173415078cd4SMichael Lange ierr = PetscSFBcastBegin(sfOverlap, MPIU_2INT, oldRemote, newRemote);CHKERRQ(ierr); 173515078cd4SMichael Lange ierr = PetscSFBcastEnd(sfOverlap, MPIU_2INT, oldRemote, newRemote);CHKERRQ(ierr); 173657f290daSMatthew G. Knepley if (oldLeaves) {ierr = PetscFree(oldRemote);CHKERRQ(ierr);} 173715078cd4SMichael Lange ierr = PetscSFCreate(comm, &sfOverlapPoint);CHKERRQ(ierr); 173815078cd4SMichael Lange ierr = PetscSFSetGraph(sfOverlapPoint, nroots, nleaves, NULL, PETSC_OWN_POINTER, newRemote, PETSC_OWN_POINTER);CHKERRQ(ierr); 173915078cd4SMichael Lange ierr = PetscSFDestroy(&sfOverlap);CHKERRQ(ierr); 1740f8987ae8SMichael Lange ierr = PetscSFDestroy(&sfMigration);CHKERRQ(ierr); 174115078cd4SMichael Lange sfMigration = sfOverlapPoint; 1742c389ea9fSToby Isaac } 1743bf5244c7SMatthew G. Knepley /* Cleanup Partition */ 1744f8987ae8SMichael Lange ierr = DMLabelDestroy(&lblPartition);CHKERRQ(ierr); 1745f8987ae8SMichael Lange ierr = DMLabelDestroy(&lblMigration);CHKERRQ(ierr); 17464eca1733SMichael Lange ierr = PetscSectionDestroy(&cellPartSection);CHKERRQ(ierr); 17474eca1733SMichael Lange ierr = ISDestroy(&cellPart);CHKERRQ(ierr); 1748721cbd76SMatthew G. Knepley /* Copy BC */ 1749a6ba4734SToby Isaac ierr = DMCopyBoundary(dm, *dmParallel);CHKERRQ(ierr); 175066fe0bfeSMatthew G. Knepley /* Create sfNatural */ 175166fe0bfeSMatthew G. Knepley if (dm->useNatural) { 175266fe0bfeSMatthew G. Knepley PetscSection section; 175366fe0bfeSMatthew G. Knepley 175492fd8e1eSJed Brown ierr = DMGetLocalSection(dm, §ion);CHKERRQ(ierr); 17550c1f158bSMatthew G. Knepley ierr = DMPlexCreateGlobalToNaturalSF(*dmParallel, section, sfMigration, &(*dmParallel)->sfNatural);CHKERRQ(ierr); 17560e663481SBlaise Bourdin ierr = DMSetUseNatural(*dmParallel, PETSC_TRUE);CHKERRQ(ierr); 175766fe0bfeSMatthew G. Knepley } 1758721cbd76SMatthew G. Knepley /* Cleanup */ 1759f8987ae8SMichael Lange if (sf) {*sf = sfMigration;} 1760f8987ae8SMichael Lange else {ierr = PetscSFDestroy(&sfMigration);CHKERRQ(ierr);} 1761f5bf2dbfSMichael Lange ierr = PetscSFDestroy(&sfPoint);CHKERRQ(ierr); 176270034214SMatthew G. Knepley ierr = PetscLogEventEnd(DMPLEX_Distribute,dm,0,0,0);CHKERRQ(ierr); 176370034214SMatthew G. Knepley PetscFunctionReturn(0); 176470034214SMatthew G. Knepley } 1765a157612eSMichael Lange 1766a157612eSMichael Lange /*@C 176724cc2ca5SMatthew G. Knepley DMPlexDistributeOverlap - Add partition overlap to a distributed non-overlapping DM. 1768a157612eSMichael Lange 1769d083f849SBarry Smith Collective on dm 1770a157612eSMichael Lange 1771a157612eSMichael Lange Input Parameter: 1772a157612eSMichael Lange + dm - The non-overlapping distrbuted DMPlex object 177357fe9a49SVaclav Hapla - overlap - The overlap of partitions (the same on all ranks) 1774a157612eSMichael Lange 1775a157612eSMichael Lange Output Parameter: 1776a157612eSMichael Lange + sf - The PetscSF used for point distribution 1777a157612eSMichael Lange - dmOverlap - The overlapping distributed DMPlex object, or NULL 1778a157612eSMichael Lange 1779dccdeccaSVaclav Hapla Notes: 1780dccdeccaSVaclav Hapla If the mesh was not distributed, the return value is NULL. 1781a157612eSMichael Lange 1782b0441da4SMatthew G. Knepley The user can control the definition of adjacency for the mesh using DMSetAdjacency(). They should choose the combination appropriate for the function 1783a157612eSMichael Lange representation on the mesh. 1784a157612eSMichael Lange 1785dccdeccaSVaclav Hapla Level: advanced 1786a157612eSMichael Lange 1787cb54e036SVaclav Hapla .seealso: DMPlexCreate(), DMSetAdjacency(), DMPlexDistribute(), DMPlexCreateOverlapLabel(), DMPlexGetOverlap() 1788a157612eSMichael Lange @*/ 1789b9f40539SMichael Lange PetscErrorCode DMPlexDistributeOverlap(DM dm, PetscInt overlap, PetscSF *sf, DM *dmOverlap) 1790a157612eSMichael Lange { 1791a157612eSMichael Lange MPI_Comm comm; 17923567eaeeSMatthew G. Knepley PetscMPIInt size, rank; 1793a157612eSMichael Lange PetscSection rootSection, leafSection; 1794a157612eSMichael Lange IS rootrank, leafrank; 1795cf86098cSMatthew G. Knepley DM dmCoord; 1796a9f1d5b2SMichael Lange DMLabel lblOverlap; 1797f5bf2dbfSMichael Lange PetscSF sfOverlap, sfStratified, sfPoint; 1798a157612eSMichael Lange PetscErrorCode ierr; 1799a157612eSMichael Lange 1800a157612eSMichael Lange PetscFunctionBegin; 1801a157612eSMichael Lange PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 180257fe9a49SVaclav Hapla PetscValidLogicalCollectiveInt(dm, overlap, 2); 1803a157612eSMichael Lange if (sf) PetscValidPointer(sf, 3); 1804a157612eSMichael Lange PetscValidPointer(dmOverlap, 4); 1805a157612eSMichael Lange 18060c86c063SLisandro Dalcin if (sf) *sf = NULL; 18070c86c063SLisandro Dalcin *dmOverlap = NULL; 1808a157612eSMichael Lange ierr = PetscObjectGetComm((PetscObject)dm,&comm);CHKERRQ(ierr); 18093567eaeeSMatthew G. Knepley ierr = MPI_Comm_size(comm, &size);CHKERRQ(ierr); 1810a157612eSMichael Lange ierr = MPI_Comm_rank(comm, &rank);CHKERRQ(ierr); 18110c86c063SLisandro Dalcin if (size == 1) PetscFunctionReturn(0); 1812a157612eSMichael Lange 18130c86c063SLisandro Dalcin ierr = PetscLogEventBegin(DMPLEX_DistributeOverlap, dm, 0, 0, 0);CHKERRQ(ierr); 1814a157612eSMichael Lange /* Compute point overlap with neighbouring processes on the distributed DM */ 181567eb269bSLisandro Dalcin ierr = PetscLogEventBegin(DMPLEX_Partition,dm,0,0,0);CHKERRQ(ierr); 1816a157612eSMichael Lange ierr = PetscSectionCreate(comm, &rootSection);CHKERRQ(ierr); 1817a157612eSMichael Lange ierr = PetscSectionCreate(comm, &leafSection);CHKERRQ(ierr); 1818a157612eSMichael Lange ierr = DMPlexDistributeOwnership(dm, rootSection, &rootrank, leafSection, &leafrank);CHKERRQ(ierr); 1819dccdeccaSVaclav Hapla ierr = DMPlexCreateOverlapLabel(dm, overlap, rootSection, rootrank, leafSection, leafrank, &lblOverlap);CHKERRQ(ierr); 1820a9f1d5b2SMichael Lange /* Convert overlap label to stratified migration SF */ 1821a9f1d5b2SMichael Lange ierr = DMPlexPartitionLabelCreateSF(dm, lblOverlap, &sfOverlap);CHKERRQ(ierr); 1822a9f1d5b2SMichael Lange ierr = DMPlexStratifyMigrationSF(dm, sfOverlap, &sfStratified);CHKERRQ(ierr); 1823a9f1d5b2SMichael Lange ierr = PetscSFDestroy(&sfOverlap);CHKERRQ(ierr); 1824a9f1d5b2SMichael Lange sfOverlap = sfStratified; 1825a9f1d5b2SMichael Lange ierr = PetscObjectSetName((PetscObject) sfOverlap, "Overlap SF");CHKERRQ(ierr); 1826a9f1d5b2SMichael Lange ierr = PetscSFSetFromOptions(sfOverlap);CHKERRQ(ierr); 1827a9f1d5b2SMichael Lange 182815fff7beSMatthew G. Knepley ierr = PetscSectionDestroy(&rootSection);CHKERRQ(ierr); 182915fff7beSMatthew G. Knepley ierr = PetscSectionDestroy(&leafSection);CHKERRQ(ierr); 183015fff7beSMatthew G. Knepley ierr = ISDestroy(&rootrank);CHKERRQ(ierr); 183115fff7beSMatthew G. Knepley ierr = ISDestroy(&leafrank);CHKERRQ(ierr); 183267eb269bSLisandro Dalcin ierr = PetscLogEventEnd(DMPLEX_Partition,dm,0,0,0);CHKERRQ(ierr); 1833a157612eSMichael Lange 1834a157612eSMichael Lange /* Build the overlapping DM */ 1835a157612eSMichael Lange ierr = DMPlexCreate(comm, dmOverlap);CHKERRQ(ierr); 1836a157612eSMichael Lange ierr = PetscObjectSetName((PetscObject) *dmOverlap, "Parallel Mesh");CHKERRQ(ierr); 1837a9f1d5b2SMichael Lange ierr = DMPlexMigrate(dm, sfOverlap, *dmOverlap);CHKERRQ(ierr); 1838cb54e036SVaclav Hapla /* Store the overlap in the new DM */ 1839cb54e036SVaclav Hapla ((DM_Plex*)(*dmOverlap)->data)->overlap = overlap + ((DM_Plex*)dm->data)->overlap; 1840f5bf2dbfSMichael Lange /* Build the new point SF */ 18411627f6ccSMichael Lange ierr = DMPlexCreatePointSF(*dmOverlap, sfOverlap, PETSC_FALSE, &sfPoint);CHKERRQ(ierr); 1842f5bf2dbfSMichael Lange ierr = DMSetPointSF(*dmOverlap, sfPoint);CHKERRQ(ierr); 1843cf86098cSMatthew G. Knepley ierr = DMGetCoordinateDM(*dmOverlap, &dmCoord);CHKERRQ(ierr); 1844cf86098cSMatthew G. Knepley if (dmCoord) {ierr = DMSetPointSF(dmCoord, sfPoint);CHKERRQ(ierr);} 1845f5bf2dbfSMichael Lange ierr = PetscSFDestroy(&sfPoint);CHKERRQ(ierr); 1846a157612eSMichael Lange /* Cleanup overlap partition */ 1847a9f1d5b2SMichael Lange ierr = DMLabelDestroy(&lblOverlap);CHKERRQ(ierr); 1848a9f1d5b2SMichael Lange if (sf) *sf = sfOverlap; 1849a9f1d5b2SMichael Lange else {ierr = PetscSFDestroy(&sfOverlap);CHKERRQ(ierr);} 18501b858b30SMichael Lange ierr = PetscLogEventEnd(DMPLEX_DistributeOverlap, dm, 0, 0, 0);CHKERRQ(ierr); 1851a157612eSMichael Lange PetscFunctionReturn(0); 1852a157612eSMichael Lange } 18536462276dSToby Isaac 1854cb54e036SVaclav Hapla PetscErrorCode DMPlexGetOverlap_Plex(DM dm, PetscInt *overlap) 1855cb54e036SVaclav Hapla { 1856cb54e036SVaclav Hapla DM_Plex *mesh = (DM_Plex*) dm->data; 1857cb54e036SVaclav Hapla 1858cb54e036SVaclav Hapla PetscFunctionBegin; 1859cb54e036SVaclav Hapla *overlap = mesh->overlap; 1860cb54e036SVaclav Hapla PetscFunctionReturn(0); 1861cb54e036SVaclav Hapla } 1862cb54e036SVaclav Hapla 1863cb54e036SVaclav Hapla /*@ 1864cb54e036SVaclav Hapla DMPlexGetOverlap - Get the DMPlex partition overlap. 1865cb54e036SVaclav Hapla 1866cb54e036SVaclav Hapla Not collective 1867cb54e036SVaclav Hapla 1868cb54e036SVaclav Hapla Input Parameter: 1869cb54e036SVaclav Hapla . dm - The DM 1870cb54e036SVaclav Hapla 1871cb54e036SVaclav Hapla Output Parameters: 1872cb54e036SVaclav Hapla . overlap - The overlap of this DM 1873cb54e036SVaclav Hapla 1874cb54e036SVaclav Hapla Level: intermediate 1875cb54e036SVaclav Hapla 1876cb54e036SVaclav Hapla .seealso: DMPlexDistribute(), DMPlexDistributeOverlap(), DMPlexCreateOverlapLabel() 1877cb54e036SVaclav Hapla @*/ 1878cb54e036SVaclav Hapla PetscErrorCode DMPlexGetOverlap(DM dm, PetscInt *overlap) 1879cb54e036SVaclav Hapla { 1880cb54e036SVaclav Hapla PetscErrorCode ierr; 1881cb54e036SVaclav Hapla 1882cb54e036SVaclav Hapla PetscFunctionBegin; 1883cb54e036SVaclav Hapla PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 1884cb54e036SVaclav Hapla ierr = PetscUseMethod(dm,"DMPlexGetOverlap_C",(DM,PetscInt*),(dm,overlap));CHKERRQ(ierr); 1885cb54e036SVaclav Hapla PetscFunctionReturn(0); 1886cb54e036SVaclav Hapla } 1887cb54e036SVaclav Hapla 1888cb54e036SVaclav Hapla 18896462276dSToby Isaac /*@C 18906462276dSToby Isaac DMPlexGetGatherDM - Get a copy of the DMPlex that gathers all points on the 18916462276dSToby Isaac root process of the original's communicator. 18926462276dSToby Isaac 1893d083f849SBarry Smith Collective on dm 189483655b49SVáclav Hapla 18956462276dSToby Isaac Input Parameters: 18966462276dSToby Isaac . dm - the original DMPlex object 18976462276dSToby Isaac 18986462276dSToby Isaac Output Parameters: 1899a13df41bSStefano Zampini + sf - the PetscSF used for point distribution (optional) 1900a13df41bSStefano Zampini - gatherMesh - the gathered DM object, or NULL 19016462276dSToby Isaac 19026462276dSToby Isaac Level: intermediate 19036462276dSToby Isaac 19046462276dSToby Isaac .seealso: DMPlexDistribute(), DMPlexGetRedundantDM() 19056462276dSToby Isaac @*/ 1906a13df41bSStefano Zampini PetscErrorCode DMPlexGetGatherDM(DM dm, PetscSF *sf, DM *gatherMesh) 19076462276dSToby Isaac { 19086462276dSToby Isaac MPI_Comm comm; 19096462276dSToby Isaac PetscMPIInt size; 19106462276dSToby Isaac PetscPartitioner oldPart, gatherPart; 19116462276dSToby Isaac PetscErrorCode ierr; 19126462276dSToby Isaac 19136462276dSToby Isaac PetscFunctionBegin; 19146462276dSToby Isaac PetscValidHeaderSpecific(dm,DM_CLASSID,1); 19150c86c063SLisandro Dalcin PetscValidPointer(gatherMesh,2); 19160c86c063SLisandro Dalcin *gatherMesh = NULL; 1917a13df41bSStefano Zampini if (sf) *sf = NULL; 19186462276dSToby Isaac comm = PetscObjectComm((PetscObject)dm); 19196462276dSToby Isaac ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 19206462276dSToby Isaac if (size == 1) PetscFunctionReturn(0); 19216462276dSToby Isaac ierr = DMPlexGetPartitioner(dm,&oldPart);CHKERRQ(ierr); 19226462276dSToby Isaac ierr = PetscObjectReference((PetscObject)oldPart);CHKERRQ(ierr); 19236462276dSToby Isaac ierr = PetscPartitionerCreate(comm,&gatherPart);CHKERRQ(ierr); 19246462276dSToby Isaac ierr = PetscPartitionerSetType(gatherPart,PETSCPARTITIONERGATHER);CHKERRQ(ierr); 19256462276dSToby Isaac ierr = DMPlexSetPartitioner(dm,gatherPart);CHKERRQ(ierr); 1926a13df41bSStefano Zampini ierr = DMPlexDistribute(dm,0,sf,gatherMesh);CHKERRQ(ierr); 1927a13df41bSStefano Zampini 19286462276dSToby Isaac ierr = DMPlexSetPartitioner(dm,oldPart);CHKERRQ(ierr); 19296462276dSToby Isaac ierr = PetscPartitionerDestroy(&gatherPart);CHKERRQ(ierr); 19306462276dSToby Isaac ierr = PetscPartitionerDestroy(&oldPart);CHKERRQ(ierr); 19316462276dSToby Isaac PetscFunctionReturn(0); 19326462276dSToby Isaac } 19336462276dSToby Isaac 19346462276dSToby Isaac /*@C 19356462276dSToby Isaac DMPlexGetRedundantDM - Get a copy of the DMPlex that is completely copied on each process. 19366462276dSToby Isaac 1937d083f849SBarry Smith Collective on dm 193883655b49SVáclav Hapla 19396462276dSToby Isaac Input Parameters: 19406462276dSToby Isaac . dm - the original DMPlex object 19416462276dSToby Isaac 19426462276dSToby Isaac Output Parameters: 1943a13df41bSStefano Zampini + sf - the PetscSF used for point distribution (optional) 1944a13df41bSStefano Zampini - redundantMesh - the redundant DM object, or NULL 19456462276dSToby Isaac 19466462276dSToby Isaac Level: intermediate 19476462276dSToby Isaac 19486462276dSToby Isaac .seealso: DMPlexDistribute(), DMPlexGetGatherDM() 19496462276dSToby Isaac @*/ 1950a13df41bSStefano Zampini PetscErrorCode DMPlexGetRedundantDM(DM dm, PetscSF *sf, DM *redundantMesh) 19516462276dSToby Isaac { 19526462276dSToby Isaac MPI_Comm comm; 19536462276dSToby Isaac PetscMPIInt size, rank; 19546462276dSToby Isaac PetscInt pStart, pEnd, p; 19556462276dSToby Isaac PetscInt numPoints = -1; 1956a13df41bSStefano Zampini PetscSF migrationSF, sfPoint, gatherSF; 19576462276dSToby Isaac DM gatherDM, dmCoord; 19586462276dSToby Isaac PetscSFNode *points; 19596462276dSToby Isaac PetscErrorCode ierr; 19606462276dSToby Isaac 19616462276dSToby Isaac PetscFunctionBegin; 19626462276dSToby Isaac PetscValidHeaderSpecific(dm,DM_CLASSID,1); 19630c86c063SLisandro Dalcin PetscValidPointer(redundantMesh,2); 19640c86c063SLisandro Dalcin *redundantMesh = NULL; 19656462276dSToby Isaac comm = PetscObjectComm((PetscObject)dm); 19666462276dSToby Isaac ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 196768dbc166SMatthew G. Knepley if (size == 1) { 196868dbc166SMatthew G. Knepley ierr = PetscObjectReference((PetscObject) dm);CHKERRQ(ierr); 196968dbc166SMatthew G. Knepley *redundantMesh = dm; 1970a13df41bSStefano Zampini if (sf) *sf = NULL; 197168dbc166SMatthew G. Knepley PetscFunctionReturn(0); 197268dbc166SMatthew G. Knepley } 1973a13df41bSStefano Zampini ierr = DMPlexGetGatherDM(dm,&gatherSF,&gatherDM);CHKERRQ(ierr); 19746462276dSToby Isaac if (!gatherDM) PetscFunctionReturn(0); 19756462276dSToby Isaac ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 19766462276dSToby Isaac ierr = DMPlexGetChart(gatherDM,&pStart,&pEnd);CHKERRQ(ierr); 19776462276dSToby Isaac numPoints = pEnd - pStart; 19786462276dSToby Isaac ierr = MPI_Bcast(&numPoints,1,MPIU_INT,0,comm);CHKERRQ(ierr); 19796462276dSToby Isaac ierr = PetscMalloc1(numPoints,&points);CHKERRQ(ierr); 19806462276dSToby Isaac ierr = PetscSFCreate(comm,&migrationSF);CHKERRQ(ierr); 19816462276dSToby Isaac for (p = 0; p < numPoints; p++) { 19826462276dSToby Isaac points[p].index = p; 19836462276dSToby Isaac points[p].rank = 0; 19846462276dSToby Isaac } 19856462276dSToby Isaac ierr = PetscSFSetGraph(migrationSF,pEnd-pStart,numPoints,NULL,PETSC_OWN_POINTER,points,PETSC_OWN_POINTER);CHKERRQ(ierr); 19866462276dSToby Isaac ierr = DMPlexCreate(comm, redundantMesh);CHKERRQ(ierr); 19876462276dSToby Isaac ierr = PetscObjectSetName((PetscObject) *redundantMesh, "Redundant Mesh");CHKERRQ(ierr); 19886462276dSToby Isaac ierr = DMPlexMigrate(gatherDM, migrationSF, *redundantMesh);CHKERRQ(ierr); 19896462276dSToby Isaac ierr = DMPlexCreatePointSF(*redundantMesh, migrationSF, PETSC_FALSE, &sfPoint);CHKERRQ(ierr); 19906462276dSToby Isaac ierr = DMSetPointSF(*redundantMesh, sfPoint);CHKERRQ(ierr); 19916462276dSToby Isaac ierr = DMGetCoordinateDM(*redundantMesh, &dmCoord);CHKERRQ(ierr); 19926462276dSToby Isaac if (dmCoord) {ierr = DMSetPointSF(dmCoord, sfPoint);CHKERRQ(ierr);} 19936462276dSToby Isaac ierr = PetscSFDestroy(&sfPoint);CHKERRQ(ierr); 1994a13df41bSStefano Zampini if (sf) { 1995a13df41bSStefano Zampini PetscSF tsf; 1996a13df41bSStefano Zampini 1997a13df41bSStefano Zampini ierr = PetscSFCompose(gatherSF,migrationSF,&tsf);CHKERRQ(ierr); 1998a13df41bSStefano Zampini ierr = DMPlexStratifyMigrationSF(dm, tsf, sf);CHKERRQ(ierr); 1999a13df41bSStefano Zampini ierr = PetscSFDestroy(&tsf);CHKERRQ(ierr); 2000a13df41bSStefano Zampini } 20016462276dSToby Isaac ierr = PetscSFDestroy(&migrationSF);CHKERRQ(ierr); 2002a13df41bSStefano Zampini ierr = PetscSFDestroy(&gatherSF);CHKERRQ(ierr); 20036462276dSToby Isaac ierr = DMDestroy(&gatherDM);CHKERRQ(ierr); 20046462276dSToby Isaac PetscFunctionReturn(0); 20056462276dSToby Isaac } 2006*5fa78c88SVaclav Hapla 2007*5fa78c88SVaclav Hapla /*@ 2008*5fa78c88SVaclav Hapla DMPlexIsDistributed - Find out whether this DM is distributed, i.e. more than one rank owns some points. 2009*5fa78c88SVaclav Hapla 2010*5fa78c88SVaclav Hapla Collective 2011*5fa78c88SVaclav Hapla 2012*5fa78c88SVaclav Hapla Input Parameter: 2013*5fa78c88SVaclav Hapla . dm - The DM object 2014*5fa78c88SVaclav Hapla 2015*5fa78c88SVaclav Hapla Output Parameter: 2016*5fa78c88SVaclav Hapla . distributed - Flag whether the DM is distributed 2017*5fa78c88SVaclav Hapla 2018*5fa78c88SVaclav Hapla Level: intermediate 2019*5fa78c88SVaclav Hapla 2020*5fa78c88SVaclav Hapla Notes: 2021*5fa78c88SVaclav Hapla This currently finds out whether at least two ranks have any DAG points. 2022*5fa78c88SVaclav Hapla This involves MPI_Allreduce() with one integer. 2023*5fa78c88SVaclav Hapla The result is currently not stashed so every call to this routine involves this global communication. 2024*5fa78c88SVaclav Hapla 2025*5fa78c88SVaclav Hapla .seealso: DMPlexDistribute(), DMPlexGetOverlap(), DMPlexIsInterpolated() 2026*5fa78c88SVaclav Hapla @*/ 2027*5fa78c88SVaclav Hapla PetscErrorCode DMPlexIsDistributed(DM dm, PetscBool *distributed) 2028*5fa78c88SVaclav Hapla { 2029*5fa78c88SVaclav Hapla PetscInt pStart, pEnd, count; 2030*5fa78c88SVaclav Hapla MPI_Comm comm; 2031*5fa78c88SVaclav Hapla PetscErrorCode ierr; 2032*5fa78c88SVaclav Hapla 2033*5fa78c88SVaclav Hapla PetscFunctionBegin; 2034*5fa78c88SVaclav Hapla PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 2035*5fa78c88SVaclav Hapla PetscValidPointer(distributed,2); 2036*5fa78c88SVaclav Hapla ierr = PetscObjectGetComm((PetscObject)dm,&comm);CHKERRQ(ierr); 2037*5fa78c88SVaclav Hapla ierr = DMPlexGetChart(dm, &pStart, &pEnd);CHKERRQ(ierr); 2038*5fa78c88SVaclav Hapla count = !!(pEnd - pStart); 2039*5fa78c88SVaclav Hapla ierr = MPI_Allreduce(MPI_IN_PLACE, &count, 1, MPIU_INT, MPI_SUM, comm);CHKERRQ(ierr); 2040*5fa78c88SVaclav Hapla *distributed = count > 1 ? PETSC_TRUE : PETSC_FALSE; 2041*5fa78c88SVaclav Hapla PetscFunctionReturn(0); 2042*5fa78c88SVaclav Hapla } 2043