xref: /petsc/src/dm/impls/plex/plexdistribute.c (revision 5fa78c884a9fa25e8efcdbcd52b1c63bca5c7be9)
1af0996ceSBarry Smith #include <petsc/private/dmpleximpl.h>    /*I      "petscdmplex.h"   I*/
2c58f1c22SToby Isaac #include <petsc/private/dmlabelimpl.h>   /*I      "petscdmlabel.h"  I*/
370034214SMatthew G. Knepley 
43c1f0c11SLawrence Mitchell /*@C
53c1f0c11SLawrence Mitchell   DMPlexSetAdjacencyUser - Define adjacency in the mesh using a user-provided callback
63c1f0c11SLawrence Mitchell 
73c1f0c11SLawrence Mitchell   Input Parameters:
83c1f0c11SLawrence Mitchell + dm      - The DM object
93c1f0c11SLawrence Mitchell . user    - The user callback, may be NULL (to clear the callback)
103c1f0c11SLawrence Mitchell - ctx     - context for callback evaluation, may be NULL
113c1f0c11SLawrence Mitchell 
123c1f0c11SLawrence Mitchell   Level: advanced
133c1f0c11SLawrence Mitchell 
143c1f0c11SLawrence Mitchell   Notes:
153c1f0c11SLawrence Mitchell      The caller of DMPlexGetAdjacency may need to arrange that a large enough array is available for the adjacency.
163c1f0c11SLawrence Mitchell 
173c1f0c11SLawrence Mitchell      Any setting here overrides other configuration of DMPlex adjacency determination.
183c1f0c11SLawrence Mitchell 
19b0441da4SMatthew G. Knepley .seealso: DMSetAdjacency(), DMPlexDistribute(), DMPlexPreallocateOperator(), DMPlexGetAdjacency(), DMPlexGetAdjacencyUser()
203c1f0c11SLawrence Mitchell @*/
213c1f0c11SLawrence Mitchell PetscErrorCode DMPlexSetAdjacencyUser(DM dm,PetscErrorCode (*user)(DM,PetscInt,PetscInt*,PetscInt[],void*),void *ctx)
223c1f0c11SLawrence Mitchell {
233c1f0c11SLawrence Mitchell   DM_Plex *mesh = (DM_Plex *)dm->data;
243c1f0c11SLawrence Mitchell 
253c1f0c11SLawrence Mitchell   PetscFunctionBegin;
263c1f0c11SLawrence Mitchell   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
273c1f0c11SLawrence Mitchell   mesh->useradjacency = user;
283c1f0c11SLawrence Mitchell   mesh->useradjacencyctx = ctx;
293c1f0c11SLawrence Mitchell   PetscFunctionReturn(0);
303c1f0c11SLawrence Mitchell }
313c1f0c11SLawrence Mitchell 
323c1f0c11SLawrence Mitchell /*@C
333c1f0c11SLawrence Mitchell   DMPlexGetAdjacencyUser - get the user-defined adjacency callback
343c1f0c11SLawrence Mitchell 
353c1f0c11SLawrence Mitchell   Input Parameter:
363c1f0c11SLawrence Mitchell . dm      - The DM object
373c1f0c11SLawrence Mitchell 
383c1f0c11SLawrence Mitchell   Output Parameters:
393c1f0c11SLawrence Mitchell - user    - The user callback
403c1f0c11SLawrence Mitchell - ctx     - context for callback evaluation
413c1f0c11SLawrence Mitchell 
423c1f0c11SLawrence Mitchell   Level: advanced
433c1f0c11SLawrence Mitchell 
44b0441da4SMatthew G. Knepley .seealso: DMSetAdjacency(), DMPlexDistribute(), DMPlexPreallocateOperator(), DMPlexGetAdjacency(), DMPlexSetAdjacencyUser()
453c1f0c11SLawrence Mitchell @*/
463c1f0c11SLawrence Mitchell PetscErrorCode DMPlexGetAdjacencyUser(DM dm, PetscErrorCode (**user)(DM,PetscInt,PetscInt*,PetscInt[],void*), void **ctx)
473c1f0c11SLawrence Mitchell {
483c1f0c11SLawrence Mitchell   DM_Plex *mesh = (DM_Plex *)dm->data;
493c1f0c11SLawrence Mitchell 
503c1f0c11SLawrence Mitchell   PetscFunctionBegin;
513c1f0c11SLawrence Mitchell   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
523c1f0c11SLawrence Mitchell   if (user) *user = mesh->useradjacency;
533c1f0c11SLawrence Mitchell   if (ctx) *ctx = mesh->useradjacencyctx;
543c1f0c11SLawrence Mitchell   PetscFunctionReturn(0);
553c1f0c11SLawrence Mitchell }
563c1f0c11SLawrence Mitchell 
5770034214SMatthew G. Knepley /*@
58a17985deSToby Isaac   DMPlexSetAdjacencyUseAnchors - Define adjacency in the mesh using the point-to-point constraints.
598b0b4c70SToby Isaac 
608b0b4c70SToby Isaac   Input Parameters:
618b0b4c70SToby Isaac + dm      - The DM object
625b317d89SToby Isaac - useAnchors - Flag to use the constraints.  If PETSC_TRUE, then constrained points are omitted from DMPlexGetAdjacency(), and their anchor points appear in their place.
638b0b4c70SToby Isaac 
648b0b4c70SToby Isaac   Level: intermediate
658b0b4c70SToby Isaac 
66b0441da4SMatthew G. Knepley .seealso: DMGetAdjacency(), DMSetAdjacency(), DMPlexDistribute(), DMPlexPreallocateOperator(), DMPlexSetAnchors()
678b0b4c70SToby Isaac @*/
685b317d89SToby Isaac PetscErrorCode DMPlexSetAdjacencyUseAnchors(DM dm, PetscBool useAnchors)
698b0b4c70SToby Isaac {
708b0b4c70SToby Isaac   DM_Plex *mesh = (DM_Plex *) dm->data;
718b0b4c70SToby Isaac 
728b0b4c70SToby Isaac   PetscFunctionBegin;
738b0b4c70SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
745b317d89SToby Isaac   mesh->useAnchors = useAnchors;
758b0b4c70SToby Isaac   PetscFunctionReturn(0);
768b0b4c70SToby Isaac }
778b0b4c70SToby Isaac 
788b0b4c70SToby Isaac /*@
79a17985deSToby Isaac   DMPlexGetAdjacencyUseAnchors - Query whether adjacency in the mesh uses the point-to-point constraints.
808b0b4c70SToby Isaac 
818b0b4c70SToby Isaac   Input Parameter:
828b0b4c70SToby Isaac . dm      - The DM object
838b0b4c70SToby Isaac 
848b0b4c70SToby Isaac   Output Parameter:
855b317d89SToby Isaac . useAnchors - Flag to use the closure.  If PETSC_TRUE, then constrained points are omitted from DMPlexGetAdjacency(), and their anchor points appear in their place.
868b0b4c70SToby Isaac 
878b0b4c70SToby Isaac   Level: intermediate
888b0b4c70SToby Isaac 
89b0441da4SMatthew G. Knepley .seealso: DMPlexSetAdjacencyUseAnchors(), DMSetAdjacency(), DMGetAdjacency(), DMPlexDistribute(), DMPlexPreallocateOperator(), DMPlexSetAnchors()
908b0b4c70SToby Isaac @*/
915b317d89SToby Isaac PetscErrorCode DMPlexGetAdjacencyUseAnchors(DM dm, PetscBool *useAnchors)
928b0b4c70SToby Isaac {
938b0b4c70SToby Isaac   DM_Plex *mesh = (DM_Plex *) dm->data;
948b0b4c70SToby Isaac 
958b0b4c70SToby Isaac   PetscFunctionBegin;
968b0b4c70SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
975b317d89SToby Isaac   PetscValidIntPointer(useAnchors, 2);
985b317d89SToby Isaac   *useAnchors = mesh->useAnchors;
998b0b4c70SToby Isaac   PetscFunctionReturn(0);
1008b0b4c70SToby Isaac }
1018b0b4c70SToby Isaac 
10270034214SMatthew G. Knepley static PetscErrorCode DMPlexGetAdjacency_Cone_Internal(DM dm, PetscInt p, PetscInt *adjSize, PetscInt adj[])
10370034214SMatthew G. Knepley {
10470034214SMatthew G. Knepley   const PetscInt *cone = NULL;
10570034214SMatthew G. Knepley   PetscInt        numAdj = 0, maxAdjSize = *adjSize, coneSize, c;
10670034214SMatthew G. Knepley   PetscErrorCode  ierr;
10770034214SMatthew G. Knepley 
10870034214SMatthew G. Knepley   PetscFunctionBeginHot;
10970034214SMatthew G. Knepley   ierr = DMPlexGetConeSize(dm, p, &coneSize);CHKERRQ(ierr);
11070034214SMatthew G. Knepley   ierr = DMPlexGetCone(dm, p, &cone);CHKERRQ(ierr);
1114b6b44bdSMatthew G. Knepley   for (c = 0; c <= coneSize; ++c) {
1124b6b44bdSMatthew G. Knepley     const PetscInt  point   = !c ? p : cone[c-1];
11370034214SMatthew G. Knepley     const PetscInt *support = NULL;
11470034214SMatthew G. Knepley     PetscInt        supportSize, s, q;
11570034214SMatthew G. Knepley 
1164b6b44bdSMatthew G. Knepley     ierr = DMPlexGetSupportSize(dm, point, &supportSize);CHKERRQ(ierr);
1174b6b44bdSMatthew G. Knepley     ierr = DMPlexGetSupport(dm, point, &support);CHKERRQ(ierr);
11870034214SMatthew G. Knepley     for (s = 0; s < supportSize; ++s) {
119527e7439SSatish Balay       for (q = 0; q < numAdj || ((void)(adj[numAdj++] = support[s]),0); ++q) {
12070034214SMatthew G. Knepley         if (support[s] == adj[q]) break;
12170034214SMatthew G. Knepley       }
12270034214SMatthew G. Knepley       if (numAdj > maxAdjSize) SETERRQ1(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid mesh exceeded adjacency allocation (%D)", maxAdjSize);
12370034214SMatthew G. Knepley     }
12470034214SMatthew G. Knepley   }
12570034214SMatthew G. Knepley   *adjSize = numAdj;
12670034214SMatthew G. Knepley   PetscFunctionReturn(0);
12770034214SMatthew G. Knepley }
12870034214SMatthew G. Knepley 
12970034214SMatthew G. Knepley static PetscErrorCode DMPlexGetAdjacency_Support_Internal(DM dm, PetscInt p, PetscInt *adjSize, PetscInt adj[])
13070034214SMatthew G. Knepley {
13170034214SMatthew G. Knepley   const PetscInt *support = NULL;
13270034214SMatthew G. Knepley   PetscInt        numAdj   = 0, maxAdjSize = *adjSize, supportSize, s;
13370034214SMatthew G. Knepley   PetscErrorCode  ierr;
13470034214SMatthew G. Knepley 
13570034214SMatthew G. Knepley   PetscFunctionBeginHot;
13670034214SMatthew G. Knepley   ierr = DMPlexGetSupportSize(dm, p, &supportSize);CHKERRQ(ierr);
13770034214SMatthew G. Knepley   ierr = DMPlexGetSupport(dm, p, &support);CHKERRQ(ierr);
1384b6b44bdSMatthew G. Knepley   for (s = 0; s <= supportSize; ++s) {
1394b6b44bdSMatthew G. Knepley     const PetscInt  point = !s ? p : support[s-1];
14070034214SMatthew G. Knepley     const PetscInt *cone  = NULL;
14170034214SMatthew G. Knepley     PetscInt        coneSize, c, q;
14270034214SMatthew G. Knepley 
1434b6b44bdSMatthew G. Knepley     ierr = DMPlexGetConeSize(dm, point, &coneSize);CHKERRQ(ierr);
1444b6b44bdSMatthew G. Knepley     ierr = DMPlexGetCone(dm, point, &cone);CHKERRQ(ierr);
14570034214SMatthew G. Knepley     for (c = 0; c < coneSize; ++c) {
146527e7439SSatish Balay       for (q = 0; q < numAdj || ((void)(adj[numAdj++] = cone[c]),0); ++q) {
14770034214SMatthew G. Knepley         if (cone[c] == adj[q]) break;
14870034214SMatthew G. Knepley       }
14970034214SMatthew G. Knepley       if (numAdj > maxAdjSize) SETERRQ1(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid mesh exceeded adjacency allocation (%D)", maxAdjSize);
15070034214SMatthew G. Knepley     }
15170034214SMatthew G. Knepley   }
15270034214SMatthew G. Knepley   *adjSize = numAdj;
15370034214SMatthew G. Knepley   PetscFunctionReturn(0);
15470034214SMatthew G. Knepley }
15570034214SMatthew G. Knepley 
15670034214SMatthew G. Knepley static PetscErrorCode DMPlexGetAdjacency_Transitive_Internal(DM dm, PetscInt p, PetscBool useClosure, PetscInt *adjSize, PetscInt adj[])
15770034214SMatthew G. Knepley {
15870034214SMatthew G. Knepley   PetscInt      *star = NULL;
15970034214SMatthew G. Knepley   PetscInt       numAdj = 0, maxAdjSize = *adjSize, starSize, s;
16070034214SMatthew G. Knepley   PetscErrorCode ierr;
16170034214SMatthew G. Knepley 
16270034214SMatthew G. Knepley   PetscFunctionBeginHot;
16370034214SMatthew G. Knepley   ierr = DMPlexGetTransitiveClosure(dm, p, useClosure, &starSize, &star);CHKERRQ(ierr);
16470034214SMatthew G. Knepley   for (s = 0; s < starSize*2; s += 2) {
16570034214SMatthew G. Knepley     const PetscInt *closure = NULL;
16670034214SMatthew G. Knepley     PetscInt        closureSize, c, q;
16770034214SMatthew G. Knepley 
16870034214SMatthew G. Knepley     ierr = DMPlexGetTransitiveClosure(dm, star[s], (PetscBool)!useClosure, &closureSize, (PetscInt**) &closure);CHKERRQ(ierr);
16970034214SMatthew G. Knepley     for (c = 0; c < closureSize*2; c += 2) {
170527e7439SSatish Balay       for (q = 0; q < numAdj || ((void)(adj[numAdj++] = closure[c]),0); ++q) {
17170034214SMatthew G. Knepley         if (closure[c] == adj[q]) break;
17270034214SMatthew G. Knepley       }
17370034214SMatthew G. Knepley       if (numAdj > maxAdjSize) SETERRQ1(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid mesh exceeded adjacency allocation (%D)", maxAdjSize);
17470034214SMatthew G. Knepley     }
17570034214SMatthew G. Knepley     ierr = DMPlexRestoreTransitiveClosure(dm, star[s], (PetscBool)!useClosure, &closureSize, (PetscInt**) &closure);CHKERRQ(ierr);
17670034214SMatthew G. Knepley   }
17770034214SMatthew G. Knepley   ierr = DMPlexRestoreTransitiveClosure(dm, p, useClosure, &starSize, &star);CHKERRQ(ierr);
17870034214SMatthew G. Knepley   *adjSize = numAdj;
17970034214SMatthew G. Knepley   PetscFunctionReturn(0);
18070034214SMatthew G. Knepley }
18170034214SMatthew G. Knepley 
1825b317d89SToby Isaac PetscErrorCode DMPlexGetAdjacency_Internal(DM dm, PetscInt p, PetscBool useCone, PetscBool useTransitiveClosure, PetscBool useAnchors, PetscInt *adjSize, PetscInt *adj[])
18370034214SMatthew G. Knepley {
18479bad331SMatthew G. Knepley   static PetscInt asiz = 0;
1858b0b4c70SToby Isaac   PetscInt maxAnchors = 1;
1868b0b4c70SToby Isaac   PetscInt aStart = -1, aEnd = -1;
1878b0b4c70SToby Isaac   PetscInt maxAdjSize;
1888b0b4c70SToby Isaac   PetscSection aSec = NULL;
1898b0b4c70SToby Isaac   IS aIS = NULL;
1908b0b4c70SToby Isaac   const PetscInt *anchors;
1913c1f0c11SLawrence Mitchell   DM_Plex *mesh = (DM_Plex *)dm->data;
19270034214SMatthew G. Knepley   PetscErrorCode  ierr;
19370034214SMatthew G. Knepley 
19470034214SMatthew G. Knepley   PetscFunctionBeginHot;
1955b317d89SToby Isaac   if (useAnchors) {
196a17985deSToby Isaac     ierr = DMPlexGetAnchors(dm,&aSec,&aIS);CHKERRQ(ierr);
1978b0b4c70SToby Isaac     if (aSec) {
1988b0b4c70SToby Isaac       ierr = PetscSectionGetMaxDof(aSec,&maxAnchors);CHKERRQ(ierr);
19924c766afSToby Isaac       maxAnchors = PetscMax(1,maxAnchors);
2008b0b4c70SToby Isaac       ierr = PetscSectionGetChart(aSec,&aStart,&aEnd);CHKERRQ(ierr);
2018b0b4c70SToby Isaac       ierr = ISGetIndices(aIS,&anchors);CHKERRQ(ierr);
2028b0b4c70SToby Isaac     }
2038b0b4c70SToby Isaac   }
20479bad331SMatthew G. Knepley   if (!*adj) {
20524c766afSToby Isaac     PetscInt depth, coneSeries, supportSeries, maxC, maxS, pStart, pEnd;
20679bad331SMatthew G. Knepley 
20724c766afSToby Isaac     ierr  = DMPlexGetChart(dm, &pStart,&pEnd);CHKERRQ(ierr);
20879bad331SMatthew G. Knepley     ierr  = DMPlexGetDepth(dm, &depth);CHKERRQ(ierr);
20924c766afSToby Isaac     ierr  = DMPlexGetMaxSizes(dm, &maxC, &maxS);CHKERRQ(ierr);
21024c766afSToby Isaac     coneSeries    = (maxC > 1) ? ((PetscPowInt(maxC,depth+1)-1)/(maxC-1)) : depth+1;
21124c766afSToby Isaac     supportSeries = (maxS > 1) ? ((PetscPowInt(maxS,depth+1)-1)/(maxS-1)) : depth+1;
21224c766afSToby Isaac     asiz  = PetscMax(PetscPowInt(maxS,depth)*coneSeries,PetscPowInt(maxC,depth)*supportSeries);
2138b0b4c70SToby Isaac     asiz *= maxAnchors;
21424c766afSToby Isaac     asiz  = PetscMin(asiz,pEnd-pStart);
21579bad331SMatthew G. Knepley     ierr  = PetscMalloc1(asiz,adj);CHKERRQ(ierr);
21679bad331SMatthew G. Knepley   }
21779bad331SMatthew G. Knepley   if (*adjSize < 0) *adjSize = asiz;
2188b0b4c70SToby Isaac   maxAdjSize = *adjSize;
2193c1f0c11SLawrence Mitchell   if (mesh->useradjacency) {
22062f17a49SStefano Zampini     ierr = (*mesh->useradjacency)(dm, p, adjSize, *adj, mesh->useradjacencyctx);CHKERRQ(ierr);
2213c1f0c11SLawrence Mitchell   } else if (useTransitiveClosure) {
22279bad331SMatthew G. Knepley     ierr = DMPlexGetAdjacency_Transitive_Internal(dm, p, useCone, adjSize, *adj);CHKERRQ(ierr);
22370034214SMatthew G. Knepley   } else if (useCone) {
22479bad331SMatthew G. Knepley     ierr = DMPlexGetAdjacency_Cone_Internal(dm, p, adjSize, *adj);CHKERRQ(ierr);
22570034214SMatthew G. Knepley   } else {
22679bad331SMatthew G. Knepley     ierr = DMPlexGetAdjacency_Support_Internal(dm, p, adjSize, *adj);CHKERRQ(ierr);
22770034214SMatthew G. Knepley   }
2285b317d89SToby Isaac   if (useAnchors && aSec) {
2298b0b4c70SToby Isaac     PetscInt origSize = *adjSize;
2308b0b4c70SToby Isaac     PetscInt numAdj = origSize;
2318b0b4c70SToby Isaac     PetscInt i = 0, j;
2328b0b4c70SToby Isaac     PetscInt *orig = *adj;
2338b0b4c70SToby Isaac 
2348b0b4c70SToby Isaac     while (i < origSize) {
2358b0b4c70SToby Isaac       PetscInt p = orig[i];
2368b0b4c70SToby Isaac       PetscInt aDof = 0;
2378b0b4c70SToby Isaac 
2388b0b4c70SToby Isaac       if (p >= aStart && p < aEnd) {
2398b0b4c70SToby Isaac         ierr = PetscSectionGetDof(aSec,p,&aDof);CHKERRQ(ierr);
2408b0b4c70SToby Isaac       }
2418b0b4c70SToby Isaac       if (aDof) {
2428b0b4c70SToby Isaac         PetscInt aOff;
2438b0b4c70SToby Isaac         PetscInt s, q;
2448b0b4c70SToby Isaac 
2458b0b4c70SToby Isaac         for (j = i + 1; j < numAdj; j++) {
2468b0b4c70SToby Isaac           orig[j - 1] = orig[j];
2478b0b4c70SToby Isaac         }
2488b0b4c70SToby Isaac         origSize--;
2498b0b4c70SToby Isaac         numAdj--;
2508b0b4c70SToby Isaac         ierr = PetscSectionGetOffset(aSec,p,&aOff);CHKERRQ(ierr);
2518b0b4c70SToby Isaac         for (s = 0; s < aDof; ++s) {
252527e7439SSatish Balay           for (q = 0; q < numAdj || ((void)(orig[numAdj++] = anchors[aOff+s]),0); ++q) {
2538b0b4c70SToby Isaac             if (anchors[aOff+s] == orig[q]) break;
2548b0b4c70SToby Isaac           }
2558b0b4c70SToby Isaac           if (numAdj > maxAdjSize) SETERRQ1(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid mesh exceeded adjacency allocation (%D)", maxAdjSize);
2568b0b4c70SToby Isaac         }
2578b0b4c70SToby Isaac       }
2588b0b4c70SToby Isaac       else {
2598b0b4c70SToby Isaac         i++;
2608b0b4c70SToby Isaac       }
2618b0b4c70SToby Isaac     }
2628b0b4c70SToby Isaac     *adjSize = numAdj;
2638b0b4c70SToby Isaac     ierr = ISRestoreIndices(aIS,&anchors);CHKERRQ(ierr);
2648b0b4c70SToby Isaac   }
26570034214SMatthew G. Knepley   PetscFunctionReturn(0);
26670034214SMatthew G. Knepley }
26770034214SMatthew G. Knepley 
26870034214SMatthew G. Knepley /*@
26970034214SMatthew G. Knepley   DMPlexGetAdjacency - Return all points adjacent to the given point
27070034214SMatthew G. Knepley 
27170034214SMatthew G. Knepley   Input Parameters:
27270034214SMatthew G. Knepley + dm - The DM object
27370034214SMatthew G. Knepley . p  - The point
27470034214SMatthew G. Knepley . adjSize - The maximum size of adj if it is non-NULL, or PETSC_DETERMINE
27570034214SMatthew G. Knepley - adj - Either NULL so that the array is allocated, or an existing array with size adjSize
27670034214SMatthew G. Knepley 
27770034214SMatthew G. Knepley   Output Parameters:
27870034214SMatthew G. Knepley + adjSize - The number of adjacent points
27970034214SMatthew G. Knepley - adj - The adjacent points
28070034214SMatthew G. Knepley 
28170034214SMatthew G. Knepley   Level: advanced
28270034214SMatthew G. Knepley 
28395452b02SPatrick Sanan   Notes:
28495452b02SPatrick Sanan     The user must PetscFree the adj array if it was not passed in.
28570034214SMatthew G. Knepley 
286b0441da4SMatthew G. Knepley .seealso: DMSetAdjacency(), DMPlexDistribute(), DMCreateMatrix(), DMPlexPreallocateOperator()
28770034214SMatthew G. Knepley @*/
28870034214SMatthew G. Knepley PetscErrorCode DMPlexGetAdjacency(DM dm, PetscInt p, PetscInt *adjSize, PetscInt *adj[])
28970034214SMatthew G. Knepley {
2901cf84007SMatthew G. Knepley   PetscBool      useCone, useClosure, useAnchors;
29170034214SMatthew G. Knepley   PetscErrorCode ierr;
29270034214SMatthew G. Knepley 
29370034214SMatthew G. Knepley   PetscFunctionBeginHot;
29470034214SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
29570034214SMatthew G. Knepley   PetscValidPointer(adjSize,3);
29670034214SMatthew G. Knepley   PetscValidPointer(adj,4);
297b0441da4SMatthew G. Knepley   ierr = DMGetBasicAdjacency(dm, &useCone, &useClosure);CHKERRQ(ierr);
2981cf84007SMatthew G. Knepley   ierr = DMPlexGetAdjacencyUseAnchors(dm, &useAnchors);CHKERRQ(ierr);
2991cf84007SMatthew G. Knepley   ierr = DMPlexGetAdjacency_Internal(dm, p, useCone, useClosure, useAnchors, adjSize, adj);CHKERRQ(ierr);
30070034214SMatthew G. Knepley   PetscFunctionReturn(0);
30170034214SMatthew G. Knepley }
30208633170SToby Isaac 
303b0a623aaSMatthew G. Knepley /*@
304b0a623aaSMatthew G. Knepley   DMPlexCreateTwoSidedProcessSF - Create an SF which just has process connectivity
305b0a623aaSMatthew G. Knepley 
306d083f849SBarry Smith   Collective on dm
307b0a623aaSMatthew G. Knepley 
308b0a623aaSMatthew G. Knepley   Input Parameters:
309b0a623aaSMatthew G. Knepley + dm      - The DM
310b0a623aaSMatthew G. Knepley - sfPoint - The PetscSF which encodes point connectivity
311b0a623aaSMatthew G. Knepley 
312b0a623aaSMatthew G. Knepley   Output Parameters:
313b0a623aaSMatthew G. Knepley + processRanks - A list of process neighbors, or NULL
314b0a623aaSMatthew G. Knepley - sfProcess    - An SF encoding the two-sided process connectivity, or NULL
315b0a623aaSMatthew G. Knepley 
316b0a623aaSMatthew G. Knepley   Level: developer
317b0a623aaSMatthew G. Knepley 
318b0a623aaSMatthew G. Knepley .seealso: PetscSFCreate(), DMPlexCreateProcessSF()
319b0a623aaSMatthew G. Knepley @*/
320b0a623aaSMatthew G. Knepley PetscErrorCode DMPlexCreateTwoSidedProcessSF(DM dm, PetscSF sfPoint, PetscSection rootRankSection, IS rootRanks, PetscSection leafRankSection, IS leafRanks, IS *processRanks, PetscSF *sfProcess)
321b0a623aaSMatthew G. Knepley {
322b0a623aaSMatthew G. Knepley   const PetscSFNode *remotePoints;
323b0a623aaSMatthew G. Knepley   PetscInt          *localPointsNew;
324b0a623aaSMatthew G. Knepley   PetscSFNode       *remotePointsNew;
325b0a623aaSMatthew G. Knepley   const PetscInt    *nranks;
326b0a623aaSMatthew G. Knepley   PetscInt          *ranksNew;
327b0a623aaSMatthew G. Knepley   PetscBT            neighbors;
328b0a623aaSMatthew G. Knepley   PetscInt           pStart, pEnd, p, numLeaves, l, numNeighbors, n;
3299852e123SBarry Smith   PetscMPIInt        size, proc, rank;
330b0a623aaSMatthew G. Knepley   PetscErrorCode     ierr;
331b0a623aaSMatthew G. Knepley 
332b0a623aaSMatthew G. Knepley   PetscFunctionBegin;
333b0a623aaSMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
334b0a623aaSMatthew G. Knepley   PetscValidHeaderSpecific(sfPoint, PETSCSF_CLASSID, 2);
335b0a623aaSMatthew G. Knepley   if (processRanks) {PetscValidPointer(processRanks, 3);}
336b0a623aaSMatthew G. Knepley   if (sfProcess)    {PetscValidPointer(sfProcess, 4);}
3379852e123SBarry Smith   ierr = MPI_Comm_size(PetscObjectComm((PetscObject) dm), &size);CHKERRQ(ierr);
338b0a623aaSMatthew G. Knepley   ierr = MPI_Comm_rank(PetscObjectComm((PetscObject) dm), &rank);CHKERRQ(ierr);
339b0a623aaSMatthew G. Knepley   ierr = PetscSFGetGraph(sfPoint, NULL, &numLeaves, NULL, &remotePoints);CHKERRQ(ierr);
3409852e123SBarry Smith   ierr = PetscBTCreate(size, &neighbors);CHKERRQ(ierr);
3419852e123SBarry Smith   ierr = PetscBTMemzero(size, neighbors);CHKERRQ(ierr);
342b0a623aaSMatthew G. Knepley   /* Compute root-to-leaf process connectivity */
343b0a623aaSMatthew G. Knepley   ierr = PetscSectionGetChart(rootRankSection, &pStart, &pEnd);CHKERRQ(ierr);
344b0a623aaSMatthew G. Knepley   ierr = ISGetIndices(rootRanks, &nranks);CHKERRQ(ierr);
345b0a623aaSMatthew G. Knepley   for (p = pStart; p < pEnd; ++p) {
346b0a623aaSMatthew G. Knepley     PetscInt ndof, noff, n;
347b0a623aaSMatthew G. Knepley 
348b0a623aaSMatthew G. Knepley     ierr = PetscSectionGetDof(rootRankSection, p, &ndof);CHKERRQ(ierr);
349b0a623aaSMatthew G. Knepley     ierr = PetscSectionGetOffset(rootRankSection, p, &noff);CHKERRQ(ierr);
350302440fdSBarry Smith     for (n = 0; n < ndof; ++n) {ierr = PetscBTSet(neighbors, nranks[noff+n]);CHKERRQ(ierr);}
351b0a623aaSMatthew G. Knepley   }
352b0a623aaSMatthew G. Knepley   ierr = ISRestoreIndices(rootRanks, &nranks);CHKERRQ(ierr);
353b0a623aaSMatthew G. Knepley   /* Compute leaf-to-neighbor process connectivity */
354b0a623aaSMatthew G. Knepley   ierr = PetscSectionGetChart(leafRankSection, &pStart, &pEnd);CHKERRQ(ierr);
355b0a623aaSMatthew G. Knepley   ierr = ISGetIndices(leafRanks, &nranks);CHKERRQ(ierr);
356b0a623aaSMatthew G. Knepley   for (p = pStart; p < pEnd; ++p) {
357b0a623aaSMatthew G. Knepley     PetscInt ndof, noff, n;
358b0a623aaSMatthew G. Knepley 
359b0a623aaSMatthew G. Knepley     ierr = PetscSectionGetDof(leafRankSection, p, &ndof);CHKERRQ(ierr);
360b0a623aaSMatthew G. Knepley     ierr = PetscSectionGetOffset(leafRankSection, p, &noff);CHKERRQ(ierr);
361302440fdSBarry Smith     for (n = 0; n < ndof; ++n) {ierr = PetscBTSet(neighbors, nranks[noff+n]);CHKERRQ(ierr);}
362b0a623aaSMatthew G. Knepley   }
363b0a623aaSMatthew G. Knepley   ierr = ISRestoreIndices(leafRanks, &nranks);CHKERRQ(ierr);
364b0a623aaSMatthew G. Knepley   /* Compute leaf-to-root process connectivity */
365b0a623aaSMatthew G. Knepley   for (l = 0; l < numLeaves; ++l) {PetscBTSet(neighbors, remotePoints[l].rank);}
366b0a623aaSMatthew G. Knepley   /* Calculate edges */
367b0a623aaSMatthew G. Knepley   PetscBTClear(neighbors, rank);
3689852e123SBarry Smith   for(proc = 0, numNeighbors = 0; proc < size; ++proc) {if (PetscBTLookup(neighbors, proc)) ++numNeighbors;}
369b0a623aaSMatthew G. Knepley   ierr = PetscMalloc1(numNeighbors, &ranksNew);CHKERRQ(ierr);
370b0a623aaSMatthew G. Knepley   ierr = PetscMalloc1(numNeighbors, &localPointsNew);CHKERRQ(ierr);
371b0a623aaSMatthew G. Knepley   ierr = PetscMalloc1(numNeighbors, &remotePointsNew);CHKERRQ(ierr);
3729852e123SBarry Smith   for(proc = 0, n = 0; proc < size; ++proc) {
373b0a623aaSMatthew G. Knepley     if (PetscBTLookup(neighbors, proc)) {
374b0a623aaSMatthew G. Knepley       ranksNew[n]              = proc;
375b0a623aaSMatthew G. Knepley       localPointsNew[n]        = proc;
376b0a623aaSMatthew G. Knepley       remotePointsNew[n].index = rank;
377b0a623aaSMatthew G. Knepley       remotePointsNew[n].rank  = proc;
378b0a623aaSMatthew G. Knepley       ++n;
379b0a623aaSMatthew G. Knepley     }
380b0a623aaSMatthew G. Knepley   }
381b0a623aaSMatthew G. Knepley   ierr = PetscBTDestroy(&neighbors);CHKERRQ(ierr);
382b0a623aaSMatthew G. Knepley   if (processRanks) {ierr = ISCreateGeneral(PetscObjectComm((PetscObject)dm), numNeighbors, ranksNew, PETSC_OWN_POINTER, processRanks);CHKERRQ(ierr);}
383b0a623aaSMatthew G. Knepley   else              {ierr = PetscFree(ranksNew);CHKERRQ(ierr);}
384b0a623aaSMatthew G. Knepley   if (sfProcess) {
385b0a623aaSMatthew G. Knepley     ierr = PetscSFCreate(PetscObjectComm((PetscObject)dm), sfProcess);CHKERRQ(ierr);
386b0a623aaSMatthew G. Knepley     ierr = PetscObjectSetName((PetscObject) *sfProcess, "Two-Sided Process SF");CHKERRQ(ierr);
387b0a623aaSMatthew G. Knepley     ierr = PetscSFSetFromOptions(*sfProcess);CHKERRQ(ierr);
3889852e123SBarry Smith     ierr = PetscSFSetGraph(*sfProcess, size, numNeighbors, localPointsNew, PETSC_OWN_POINTER, remotePointsNew, PETSC_OWN_POINTER);CHKERRQ(ierr);
389b0a623aaSMatthew G. Knepley   }
390b0a623aaSMatthew G. Knepley   PetscFunctionReturn(0);
391b0a623aaSMatthew G. Knepley }
392b0a623aaSMatthew G. Knepley 
393b0a623aaSMatthew G. Knepley /*@
394b0a623aaSMatthew G. Knepley   DMPlexDistributeOwnership - Compute owner information for shared points. This basically gets two-sided for an SF.
395b0a623aaSMatthew G. Knepley 
396d083f849SBarry Smith   Collective on dm
397b0a623aaSMatthew G. Knepley 
398b0a623aaSMatthew G. Knepley   Input Parameter:
399b0a623aaSMatthew G. Knepley . dm - The DM
400b0a623aaSMatthew G. Knepley 
401b0a623aaSMatthew G. Knepley   Output Parameters:
402b0a623aaSMatthew G. Knepley + rootSection - The number of leaves for a given root point
403b0a623aaSMatthew G. Knepley . rootrank    - The rank of each edge into the root point
404b0a623aaSMatthew G. Knepley . leafSection - The number of processes sharing a given leaf point
405b0a623aaSMatthew G. Knepley - leafrank    - The rank of each process sharing a leaf point
406b0a623aaSMatthew G. Knepley 
407b0a623aaSMatthew G. Knepley   Level: developer
408b0a623aaSMatthew G. Knepley 
409dccdeccaSVaclav Hapla .seealso: DMPlexCreateOverlapLabel(), DMPlexDistribute(), DMPlexDistributeOverlap()
410b0a623aaSMatthew G. Knepley @*/
411b0a623aaSMatthew G. Knepley PetscErrorCode DMPlexDistributeOwnership(DM dm, PetscSection rootSection, IS *rootrank, PetscSection leafSection, IS *leafrank)
412b0a623aaSMatthew G. Knepley {
413b0a623aaSMatthew G. Knepley   MPI_Comm        comm;
414b0a623aaSMatthew G. Knepley   PetscSF         sfPoint;
415b0a623aaSMatthew G. Knepley   const PetscInt *rootdegree;
416b0a623aaSMatthew G. Knepley   PetscInt       *myrank, *remoterank;
417b0a623aaSMatthew G. Knepley   PetscInt        pStart, pEnd, p, nedges;
418b0a623aaSMatthew G. Knepley   PetscMPIInt     rank;
419b0a623aaSMatthew G. Knepley   PetscErrorCode  ierr;
420b0a623aaSMatthew G. Knepley 
421b0a623aaSMatthew G. Knepley   PetscFunctionBegin;
422b0a623aaSMatthew G. Knepley   ierr = PetscObjectGetComm((PetscObject) dm, &comm);CHKERRQ(ierr);
423b0a623aaSMatthew G. Knepley   ierr = MPI_Comm_rank(comm, &rank);CHKERRQ(ierr);
424b0a623aaSMatthew G. Knepley   ierr = DMPlexGetChart(dm, &pStart, &pEnd);CHKERRQ(ierr);
425b0a623aaSMatthew G. Knepley   ierr = DMGetPointSF(dm, &sfPoint);CHKERRQ(ierr);
426b0a623aaSMatthew G. Knepley   /* Compute number of leaves for each root */
427b0a623aaSMatthew G. Knepley   ierr = PetscObjectSetName((PetscObject) rootSection, "Root Section");CHKERRQ(ierr);
428b0a623aaSMatthew G. Knepley   ierr = PetscSectionSetChart(rootSection, pStart, pEnd);CHKERRQ(ierr);
429b0a623aaSMatthew G. Knepley   ierr = PetscSFComputeDegreeBegin(sfPoint, &rootdegree);CHKERRQ(ierr);
430b0a623aaSMatthew G. Knepley   ierr = PetscSFComputeDegreeEnd(sfPoint, &rootdegree);CHKERRQ(ierr);
431b0a623aaSMatthew G. Knepley   for (p = pStart; p < pEnd; ++p) {ierr = PetscSectionSetDof(rootSection, p, rootdegree[p-pStart]);CHKERRQ(ierr);}
432b0a623aaSMatthew G. Knepley   ierr = PetscSectionSetUp(rootSection);CHKERRQ(ierr);
433b0a623aaSMatthew G. Knepley   /* Gather rank of each leaf to root */
434b0a623aaSMatthew G. Knepley   ierr = PetscSectionGetStorageSize(rootSection, &nedges);CHKERRQ(ierr);
435b0a623aaSMatthew G. Knepley   ierr = PetscMalloc1(pEnd-pStart, &myrank);CHKERRQ(ierr);
436b0a623aaSMatthew G. Knepley   ierr = PetscMalloc1(nedges,  &remoterank);CHKERRQ(ierr);
437b0a623aaSMatthew G. Knepley   for (p = 0; p < pEnd-pStart; ++p) myrank[p] = rank;
438b0a623aaSMatthew G. Knepley   ierr = PetscSFGatherBegin(sfPoint, MPIU_INT, myrank, remoterank);CHKERRQ(ierr);
439b0a623aaSMatthew G. Knepley   ierr = PetscSFGatherEnd(sfPoint, MPIU_INT, myrank, remoterank);CHKERRQ(ierr);
440b0a623aaSMatthew G. Knepley   ierr = PetscFree(myrank);CHKERRQ(ierr);
441b0a623aaSMatthew G. Knepley   ierr = ISCreateGeneral(comm, nedges, remoterank, PETSC_OWN_POINTER, rootrank);CHKERRQ(ierr);
442b0a623aaSMatthew G. Knepley   /* Distribute remote ranks to leaves */
443b0a623aaSMatthew G. Knepley   ierr = PetscObjectSetName((PetscObject) leafSection, "Leaf Section");CHKERRQ(ierr);
444b0a623aaSMatthew G. Knepley   ierr = DMPlexDistributeFieldIS(dm, sfPoint, rootSection, *rootrank, leafSection, leafrank);CHKERRQ(ierr);
445b0a623aaSMatthew G. Knepley   PetscFunctionReturn(0);
446b0a623aaSMatthew G. Knepley }
447b0a623aaSMatthew G. Knepley 
448278397a0SMatthew G. Knepley /*@C
449dccdeccaSVaclav Hapla   DMPlexCreateOverlapLabel - Compute owner information for shared points. This basically gets two-sided for an SF.
450b0a623aaSMatthew G. Knepley 
451d083f849SBarry Smith   Collective on dm
452b0a623aaSMatthew G. Knepley 
453b0a623aaSMatthew G. Knepley   Input Parameters:
454b0a623aaSMatthew G. Knepley + dm          - The DM
45524d039d7SMichael Lange . levels      - Number of overlap levels
456b0a623aaSMatthew G. Knepley . rootSection - The number of leaves for a given root point
457b0a623aaSMatthew G. Knepley . rootrank    - The rank of each edge into the root point
458b0a623aaSMatthew G. Knepley . leafSection - The number of processes sharing a given leaf point
459b0a623aaSMatthew G. Knepley - leafrank    - The rank of each process sharing a leaf point
460b0a623aaSMatthew G. Knepley 
461dccdeccaSVaclav Hapla   Output Parameters:
462b4ec6ac8SBarry Smith . ovLabel     - DMLabel containing remote overlap contributions as point/rank pairings
463b0a623aaSMatthew G. Knepley 
464b0a623aaSMatthew G. Knepley   Level: developer
465b0a623aaSMatthew G. Knepley 
4661fd9873aSMichael Lange .seealso: DMPlexDistributeOwnership(), DMPlexDistribute()
467b0a623aaSMatthew G. Knepley @*/
468dccdeccaSVaclav Hapla PetscErrorCode DMPlexCreateOverlapLabel(DM dm, PetscInt levels, PetscSection rootSection, IS rootrank, PetscSection leafSection, IS leafrank, DMLabel *ovLabel)
469b0a623aaSMatthew G. Knepley {
470e540f424SMichael Lange   MPI_Comm           comm;
471b0a623aaSMatthew G. Knepley   DMLabel            ovAdjByRank; /* A DMLabel containing all points adjacent to shared points, separated by rank (value in label) */
472874ddda9SLisandro Dalcin   PetscSF            sfPoint;
473b0a623aaSMatthew G. Knepley   const PetscSFNode *remote;
474b0a623aaSMatthew G. Knepley   const PetscInt    *local;
4751fd9873aSMichael Lange   const PetscInt    *nrank, *rrank;
476b0a623aaSMatthew G. Knepley   PetscInt          *adj = NULL;
4771fd9873aSMichael Lange   PetscInt           pStart, pEnd, p, sStart, sEnd, nleaves, l;
4789852e123SBarry Smith   PetscMPIInt        rank, size;
47931bc6364SLisandro Dalcin   PetscBool          flg;
480b0a623aaSMatthew G. Knepley   PetscErrorCode     ierr;
481b0a623aaSMatthew G. Knepley 
482b0a623aaSMatthew G. Knepley   PetscFunctionBegin;
4836ba1a4c7SVaclav Hapla   *ovLabel = NULL;
484e540f424SMichael Lange   ierr = PetscObjectGetComm((PetscObject) dm, &comm);CHKERRQ(ierr);
4859852e123SBarry Smith   ierr = MPI_Comm_size(comm, &size);CHKERRQ(ierr);
486e540f424SMichael Lange   ierr = MPI_Comm_rank(comm, &rank);CHKERRQ(ierr);
4876ba1a4c7SVaclav Hapla   if (size == 1) PetscFunctionReturn(0);
488b0a623aaSMatthew G. Knepley   ierr = DMGetPointSF(dm, &sfPoint);CHKERRQ(ierr);
489b0a623aaSMatthew G. Knepley   ierr = DMPlexGetChart(dm, &pStart, &pEnd);CHKERRQ(ierr);
490b0a623aaSMatthew G. Knepley   ierr = PetscSectionGetChart(leafSection, &sStart, &sEnd);CHKERRQ(ierr);
491b0a623aaSMatthew G. Knepley   ierr = PetscSFGetGraph(sfPoint, NULL, &nleaves, &local, &remote);CHKERRQ(ierr);
492d67d17b1SMatthew G. Knepley   ierr = DMLabelCreate(PETSC_COMM_SELF, "Overlap adjacency", &ovAdjByRank);CHKERRQ(ierr);
493b0a623aaSMatthew G. Knepley   /* Handle leaves: shared with the root point */
494b0a623aaSMatthew G. Knepley   for (l = 0; l < nleaves; ++l) {
495b0a623aaSMatthew G. Knepley     PetscInt adjSize = PETSC_DETERMINE, a;
496b0a623aaSMatthew G. Knepley 
497df20756eSMatthew G. Knepley     ierr = DMPlexGetAdjacency(dm, local ? local[l] : l, &adjSize, &adj);CHKERRQ(ierr);
498b0a623aaSMatthew G. Knepley     for (a = 0; a < adjSize; ++a) {ierr = DMLabelSetValue(ovAdjByRank, adj[a], remote[l].rank);CHKERRQ(ierr);}
499b0a623aaSMatthew G. Knepley   }
500b0a623aaSMatthew G. Knepley   ierr = ISGetIndices(rootrank, &rrank);CHKERRQ(ierr);
501b0a623aaSMatthew G. Knepley   ierr = ISGetIndices(leafrank, &nrank);CHKERRQ(ierr);
502b0a623aaSMatthew G. Knepley   /* Handle roots */
503b0a623aaSMatthew G. Knepley   for (p = pStart; p < pEnd; ++p) {
504b0a623aaSMatthew G. Knepley     PetscInt adjSize = PETSC_DETERMINE, neighbors = 0, noff, n, a;
505b0a623aaSMatthew G. Knepley 
506b0a623aaSMatthew G. Knepley     if ((p >= sStart) && (p < sEnd)) {
507b0a623aaSMatthew G. Knepley       /* Some leaves share a root with other leaves on different processes */
508b0a623aaSMatthew G. Knepley       ierr = PetscSectionGetDof(leafSection, p, &neighbors);CHKERRQ(ierr);
509b0a623aaSMatthew G. Knepley       if (neighbors) {
510b0a623aaSMatthew G. Knepley         ierr = PetscSectionGetOffset(leafSection, p, &noff);CHKERRQ(ierr);
511b0a623aaSMatthew G. Knepley         ierr = DMPlexGetAdjacency(dm, p, &adjSize, &adj);CHKERRQ(ierr);
512b0a623aaSMatthew G. Knepley         for (n = 0; n < neighbors; ++n) {
513b0a623aaSMatthew G. Knepley           const PetscInt remoteRank = nrank[noff+n];
514b0a623aaSMatthew G. Knepley 
515b0a623aaSMatthew G. Knepley           if (remoteRank == rank) continue;
516b0a623aaSMatthew G. Knepley           for (a = 0; a < adjSize; ++a) {ierr = DMLabelSetValue(ovAdjByRank, adj[a], remoteRank);CHKERRQ(ierr);}
517b0a623aaSMatthew G. Knepley         }
518b0a623aaSMatthew G. Knepley       }
519b0a623aaSMatthew G. Knepley     }
520b0a623aaSMatthew G. Knepley     /* Roots are shared with leaves */
521b0a623aaSMatthew G. Knepley     ierr = PetscSectionGetDof(rootSection, p, &neighbors);CHKERRQ(ierr);
522b0a623aaSMatthew G. Knepley     if (!neighbors) continue;
523b0a623aaSMatthew G. Knepley     ierr = PetscSectionGetOffset(rootSection, p, &noff);CHKERRQ(ierr);
524b0a623aaSMatthew G. Knepley     ierr = DMPlexGetAdjacency(dm, p, &adjSize, &adj);CHKERRQ(ierr);
525b0a623aaSMatthew G. Knepley     for (n = 0; n < neighbors; ++n) {
526b0a623aaSMatthew G. Knepley       const PetscInt remoteRank = rrank[noff+n];
527b0a623aaSMatthew G. Knepley 
528b0a623aaSMatthew G. Knepley       if (remoteRank == rank) continue;
529b0a623aaSMatthew G. Knepley       for (a = 0; a < adjSize; ++a) {ierr = DMLabelSetValue(ovAdjByRank, adj[a], remoteRank);CHKERRQ(ierr);}
530b0a623aaSMatthew G. Knepley     }
531b0a623aaSMatthew G. Knepley   }
532b0a623aaSMatthew G. Knepley   ierr = PetscFree(adj);CHKERRQ(ierr);
533b0a623aaSMatthew G. Knepley   ierr = ISRestoreIndices(rootrank, &rrank);CHKERRQ(ierr);
534b0a623aaSMatthew G. Knepley   ierr = ISRestoreIndices(leafrank, &nrank);CHKERRQ(ierr);
53524d039d7SMichael Lange   /* Add additional overlap levels */
536be200f8dSMichael Lange   for (l = 1; l < levels; l++) {
537be200f8dSMichael Lange     /* Propagate point donations over SF to capture remote connections */
538be200f8dSMichael Lange     ierr = DMPlexPartitionLabelPropagate(dm, ovAdjByRank);CHKERRQ(ierr);
539be200f8dSMichael Lange     /* Add next level of point donations to the label */
540be200f8dSMichael Lange     ierr = DMPlexPartitionLabelAdjacency(dm, ovAdjByRank);CHKERRQ(ierr);
541be200f8dSMichael Lange   }
54226a7d390SMatthew G. Knepley   /* We require the closure in the overlap */
5435abbe4feSMichael Lange   ierr = DMPlexPartitionLabelClosure(dm, ovAdjByRank);CHKERRQ(ierr);
544c5929fdfSBarry Smith   ierr = PetscOptionsHasName(((PetscObject) dm)->options,((PetscObject) dm)->prefix, "-overlap_view", &flg);CHKERRQ(ierr);
545e540f424SMichael Lange   if (flg) {
546825f8a23SLisandro Dalcin     PetscViewer viewer;
547825f8a23SLisandro Dalcin     ierr = PetscViewerASCIIGetStdout(PetscObjectComm((PetscObject)dm), &viewer);CHKERRQ(ierr);
548825f8a23SLisandro Dalcin     ierr = DMLabelView(ovAdjByRank, viewer);CHKERRQ(ierr);
549b0a623aaSMatthew G. Knepley   }
550874ddda9SLisandro Dalcin   /* Invert sender to receiver label */
551d67d17b1SMatthew G. Knepley   ierr = DMLabelCreate(PETSC_COMM_SELF, "Overlap label", ovLabel);CHKERRQ(ierr);
552874ddda9SLisandro Dalcin   ierr = DMPlexPartitionLabelInvert(dm, ovAdjByRank, NULL, *ovLabel);CHKERRQ(ierr);
553a9f1d5b2SMichael Lange   /* Add owned points, except for shared local points */
554a9f1d5b2SMichael Lange   for (p = pStart; p < pEnd; ++p) {ierr = DMLabelSetValue(*ovLabel, p, rank);CHKERRQ(ierr);}
555e540f424SMichael Lange   for (l = 0; l < nleaves; ++l) {
556a9f1d5b2SMichael Lange     ierr = DMLabelClearValue(*ovLabel, local[l], rank);CHKERRQ(ierr);
557a9f1d5b2SMichael Lange     ierr = DMLabelSetValue(*ovLabel, remote[l].index, remote[l].rank);CHKERRQ(ierr);
558e540f424SMichael Lange   }
559e540f424SMichael Lange   /* Clean up */
5601fd9873aSMichael Lange   ierr = DMLabelDestroy(&ovAdjByRank);CHKERRQ(ierr);
561b0a623aaSMatthew G. Knepley   PetscFunctionReturn(0);
562b0a623aaSMatthew G. Knepley }
56370034214SMatthew G. Knepley 
56424cc2ca5SMatthew G. Knepley /*@C
56524cc2ca5SMatthew G. Knepley   DMPlexCreateOverlapMigrationSF - Create an SF describing the new mesh distribution to make the overlap described by the input SF
56624cc2ca5SMatthew G. Knepley 
567d083f849SBarry Smith   Collective on dm
56824cc2ca5SMatthew G. Knepley 
56924cc2ca5SMatthew G. Knepley   Input Parameters:
57024cc2ca5SMatthew G. Knepley + dm          - The DM
57124cc2ca5SMatthew G. Knepley - overlapSF   - The SF mapping ghost points in overlap to owner points on other processes
57224cc2ca5SMatthew G. Knepley 
57324cc2ca5SMatthew G. Knepley   Output Parameters:
574a2b725a8SWilliam Gropp . migrationSF - An SF that maps original points in old locations to points in new locations
57524cc2ca5SMatthew G. Knepley 
57624cc2ca5SMatthew G. Knepley   Level: developer
57724cc2ca5SMatthew G. Knepley 
578dccdeccaSVaclav Hapla .seealso: DMPlexCreateOverlapLabel(), DMPlexDistributeOverlap(), DMPlexDistribute()
57924cc2ca5SMatthew G. Knepley @*/
58046f9b1c3SMichael Lange PetscErrorCode DMPlexCreateOverlapMigrationSF(DM dm, PetscSF overlapSF, PetscSF *migrationSF)
58146f9b1c3SMichael Lange {
58246f9b1c3SMichael Lange   MPI_Comm           comm;
5839852e123SBarry Smith   PetscMPIInt        rank, size;
58446f9b1c3SMichael Lange   PetscInt           d, dim, p, pStart, pEnd, nroots, nleaves, newLeaves, point, numSharedPoints;
58546f9b1c3SMichael Lange   PetscInt          *pointDepths, *remoteDepths, *ilocal;
58646f9b1c3SMichael Lange   PetscInt          *depthRecv, *depthShift, *depthIdx;
58746f9b1c3SMichael Lange   PetscSFNode       *iremote;
58846f9b1c3SMichael Lange   PetscSF            pointSF;
58946f9b1c3SMichael Lange   const PetscInt    *sharedLocal;
59046f9b1c3SMichael Lange   const PetscSFNode *overlapRemote, *sharedRemote;
59146f9b1c3SMichael Lange   PetscErrorCode     ierr;
59246f9b1c3SMichael Lange 
59346f9b1c3SMichael Lange   PetscFunctionBegin;
59446f9b1c3SMichael Lange   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
59546f9b1c3SMichael Lange   ierr = PetscObjectGetComm((PetscObject)dm, &comm);CHKERRQ(ierr);
59646f9b1c3SMichael Lange   ierr = MPI_Comm_rank(comm, &rank);CHKERRQ(ierr);
5979852e123SBarry Smith   ierr = MPI_Comm_size(comm, &size);CHKERRQ(ierr);
59846f9b1c3SMichael Lange   ierr = DMGetDimension(dm, &dim);CHKERRQ(ierr);
59946f9b1c3SMichael Lange 
60046f9b1c3SMichael Lange   /* Before building the migration SF we need to know the new stratum offsets */
60146f9b1c3SMichael Lange   ierr = PetscSFGetGraph(overlapSF, &nroots, &nleaves, NULL, &overlapRemote);CHKERRQ(ierr);
60246f9b1c3SMichael Lange   ierr = PetscMalloc2(nroots, &pointDepths, nleaves, &remoteDepths);CHKERRQ(ierr);
60346f9b1c3SMichael Lange   for (d=0; d<dim+1; d++) {
60446f9b1c3SMichael Lange     ierr = DMPlexGetDepthStratum(dm, d, &pStart, &pEnd);CHKERRQ(ierr);
60546f9b1c3SMichael Lange     for (p=pStart; p<pEnd; p++) pointDepths[p] = d;
60646f9b1c3SMichael Lange   }
60746f9b1c3SMichael Lange   for (p=0; p<nleaves; p++) remoteDepths[p] = -1;
60846f9b1c3SMichael Lange   ierr = PetscSFBcastBegin(overlapSF, MPIU_INT, pointDepths, remoteDepths);CHKERRQ(ierr);
60946f9b1c3SMichael Lange   ierr = PetscSFBcastEnd(overlapSF, MPIU_INT, pointDepths, remoteDepths);CHKERRQ(ierr);
61046f9b1c3SMichael Lange 
61146f9b1c3SMichael Lange   /* Count recevied points in each stratum and compute the internal strata shift */
61246f9b1c3SMichael Lange   ierr = PetscMalloc3(dim+1, &depthRecv, dim+1, &depthShift, dim+1, &depthIdx);CHKERRQ(ierr);
61346f9b1c3SMichael Lange   for (d=0; d<dim+1; d++) depthRecv[d]=0;
61446f9b1c3SMichael Lange   for (p=0; p<nleaves; p++) depthRecv[remoteDepths[p]]++;
61546f9b1c3SMichael Lange   depthShift[dim] = 0;
61646f9b1c3SMichael Lange   for (d=0; d<dim; d++) depthShift[d] = depthRecv[dim];
61746f9b1c3SMichael Lange   for (d=1; d<dim; d++) depthShift[d] += depthRecv[0];
61846f9b1c3SMichael Lange   for (d=dim-2; d>0; d--) depthShift[d] += depthRecv[d+1];
61946f9b1c3SMichael Lange   for (d=0; d<dim+1; d++) {
62046f9b1c3SMichael Lange     ierr = DMPlexGetDepthStratum(dm, d, &pStart, &pEnd);CHKERRQ(ierr);
62146f9b1c3SMichael Lange     depthIdx[d] = pStart + depthShift[d];
62246f9b1c3SMichael Lange   }
62346f9b1c3SMichael Lange 
62446f9b1c3SMichael Lange   /* Form the overlap SF build an SF that describes the full overlap migration SF */
62546f9b1c3SMichael Lange   ierr = DMPlexGetChart(dm, &pStart, &pEnd);CHKERRQ(ierr);
62646f9b1c3SMichael Lange   newLeaves = pEnd - pStart + nleaves;
62709b7985cSMatthew G. Knepley   ierr = PetscMalloc1(newLeaves, &ilocal);CHKERRQ(ierr);
62809b7985cSMatthew G. Knepley   ierr = PetscMalloc1(newLeaves, &iremote);CHKERRQ(ierr);
62946f9b1c3SMichael Lange   /* First map local points to themselves */
63046f9b1c3SMichael Lange   for (d=0; d<dim+1; d++) {
63146f9b1c3SMichael Lange     ierr = DMPlexGetDepthStratum(dm, d, &pStart, &pEnd);CHKERRQ(ierr);
63246f9b1c3SMichael Lange     for (p=pStart; p<pEnd; p++) {
63346f9b1c3SMichael Lange       point = p + depthShift[d];
63446f9b1c3SMichael Lange       ilocal[point] = point;
63546f9b1c3SMichael Lange       iremote[point].index = p;
63646f9b1c3SMichael Lange       iremote[point].rank = rank;
63746f9b1c3SMichael Lange       depthIdx[d]++;
63846f9b1c3SMichael Lange     }
63946f9b1c3SMichael Lange   }
64046f9b1c3SMichael Lange 
64146f9b1c3SMichael Lange   /* Add in the remote roots for currently shared points */
64246f9b1c3SMichael Lange   ierr = DMGetPointSF(dm, &pointSF);CHKERRQ(ierr);
64346f9b1c3SMichael Lange   ierr = PetscSFGetGraph(pointSF, NULL, &numSharedPoints, &sharedLocal, &sharedRemote);CHKERRQ(ierr);
64446f9b1c3SMichael Lange   for (d=0; d<dim+1; d++) {
64546f9b1c3SMichael Lange     ierr = DMPlexGetDepthStratum(dm, d, &pStart, &pEnd);CHKERRQ(ierr);
64646f9b1c3SMichael Lange     for (p=0; p<numSharedPoints; p++) {
64746f9b1c3SMichael Lange       if (pStart <= sharedLocal[p] && sharedLocal[p] < pEnd) {
64846f9b1c3SMichael Lange         point = sharedLocal[p] + depthShift[d];
64946f9b1c3SMichael Lange         iremote[point].index = sharedRemote[p].index;
65046f9b1c3SMichael Lange         iremote[point].rank = sharedRemote[p].rank;
65146f9b1c3SMichael Lange       }
65246f9b1c3SMichael Lange     }
65346f9b1c3SMichael Lange   }
65446f9b1c3SMichael Lange 
65546f9b1c3SMichael Lange   /* Now add the incoming overlap points */
65646f9b1c3SMichael Lange   for (p=0; p<nleaves; p++) {
65746f9b1c3SMichael Lange     point = depthIdx[remoteDepths[p]];
65846f9b1c3SMichael Lange     ilocal[point] = point;
65946f9b1c3SMichael Lange     iremote[point].index = overlapRemote[p].index;
66046f9b1c3SMichael Lange     iremote[point].rank = overlapRemote[p].rank;
66146f9b1c3SMichael Lange     depthIdx[remoteDepths[p]]++;
66246f9b1c3SMichael Lange   }
66315fff7beSMatthew G. Knepley   ierr = PetscFree2(pointDepths,remoteDepths);CHKERRQ(ierr);
66446f9b1c3SMichael Lange 
66546f9b1c3SMichael Lange   ierr = PetscSFCreate(comm, migrationSF);CHKERRQ(ierr);
66646f9b1c3SMichael Lange   ierr = PetscObjectSetName((PetscObject) *migrationSF, "Overlap Migration SF");CHKERRQ(ierr);
66746f9b1c3SMichael Lange   ierr = PetscSFSetFromOptions(*migrationSF);CHKERRQ(ierr);
66846f9b1c3SMichael Lange   ierr = DMPlexGetChart(dm, &pStart, &pEnd);CHKERRQ(ierr);
66946f9b1c3SMichael Lange   ierr = PetscSFSetGraph(*migrationSF, pEnd-pStart, newLeaves, ilocal, PETSC_OWN_POINTER, iremote, PETSC_OWN_POINTER);CHKERRQ(ierr);
67046f9b1c3SMichael Lange 
67146f9b1c3SMichael Lange   ierr = PetscFree3(depthRecv, depthShift, depthIdx);CHKERRQ(ierr);
67270034214SMatthew G. Knepley   PetscFunctionReturn(0);
67370034214SMatthew G. Knepley }
67470034214SMatthew G. Knepley 
675a9f1d5b2SMichael Lange /*@
676f0e73a3dSToby Isaac   DMPlexStratifyMigrationSF - Rearrange the leaves of a migration sf for stratification.
677a9f1d5b2SMichael Lange 
678a9f1d5b2SMichael Lange   Input Parameter:
679a9f1d5b2SMichael Lange + dm          - The DM
680a9f1d5b2SMichael Lange - sf          - A star forest with non-ordered leaves, usually defining a DM point migration
681a9f1d5b2SMichael Lange 
682a9f1d5b2SMichael Lange   Output Parameter:
683a9f1d5b2SMichael Lange . migrationSF - A star forest with added leaf indirection that ensures the resulting DM is stratified
684a9f1d5b2SMichael Lange 
685a9f1d5b2SMichael Lange   Level: developer
686a9f1d5b2SMichael Lange 
687a9f1d5b2SMichael Lange .seealso: DMPlexPartitionLabelCreateSF(), DMPlexDistribute(), DMPlexDistributeOverlap()
688a9f1d5b2SMichael Lange @*/
689a9f1d5b2SMichael Lange PetscErrorCode DMPlexStratifyMigrationSF(DM dm, PetscSF sf, PetscSF *migrationSF)
690a9f1d5b2SMichael Lange {
691a9f1d5b2SMichael Lange   MPI_Comm           comm;
6929852e123SBarry Smith   PetscMPIInt        rank, size;
6937fab53ddSMatthew G. Knepley   PetscInt           d, ldepth, depth, p, pStart, pEnd, nroots, nleaves;
694a9f1d5b2SMichael Lange   PetscInt          *pointDepths, *remoteDepths, *ilocal;
695a9f1d5b2SMichael Lange   PetscInt          *depthRecv, *depthShift, *depthIdx;
696f0e73a3dSToby Isaac   PetscInt           hybEnd[4];
697a9f1d5b2SMichael Lange   const PetscSFNode *iremote;
698a9f1d5b2SMichael Lange   PetscErrorCode     ierr;
699a9f1d5b2SMichael Lange 
700a9f1d5b2SMichael Lange   PetscFunctionBegin;
701a9f1d5b2SMichael Lange   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
702a9f1d5b2SMichael Lange   ierr = PetscObjectGetComm((PetscObject) dm, &comm);CHKERRQ(ierr);
703a9f1d5b2SMichael Lange   ierr = MPI_Comm_rank(comm, &rank);CHKERRQ(ierr);
7049852e123SBarry Smith   ierr = MPI_Comm_size(comm, &size);CHKERRQ(ierr);
7057fab53ddSMatthew G. Knepley   ierr = DMPlexGetDepth(dm, &ldepth);CHKERRQ(ierr);
706b2566f29SBarry Smith   ierr = MPIU_Allreduce(&ldepth, &depth, 1, MPIU_INT, MPI_MAX, comm);CHKERRQ(ierr);
7077fab53ddSMatthew G. Knepley   if ((ldepth >= 0) && (depth != ldepth)) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Inconsistent Plex depth %d != %d", ldepth, depth);
70830b0ce1bSStefano Zampini   ierr = PetscLogEventBegin(DMPLEX_PartStratSF,dm,0,0,0);CHKERRQ(ierr);
709a9f1d5b2SMichael Lange 
710a9f1d5b2SMichael Lange   /* Before building the migration SF we need to know the new stratum offsets */
711a9f1d5b2SMichael Lange   ierr = PetscSFGetGraph(sf, &nroots, &nleaves, NULL, &iremote);CHKERRQ(ierr);
712a9f1d5b2SMichael Lange   ierr = PetscMalloc2(nroots, &pointDepths, nleaves, &remoteDepths);CHKERRQ(ierr);
7135510c841SStefano Zampini   ierr = DMPlexGetHybridBounds(dm,&hybEnd[depth],&hybEnd[PetscMax(depth-1,0)],&hybEnd[1],&hybEnd[0]);CHKERRQ(ierr);
7147fab53ddSMatthew G. Knepley   for (d = 0; d < depth+1; ++d) {
715a9f1d5b2SMichael Lange     ierr = DMPlexGetDepthStratum(dm, d, &pStart, &pEnd);CHKERRQ(ierr);
716f0e73a3dSToby Isaac     for (p = pStart; p < pEnd; ++p) {
717f0e73a3dSToby Isaac       if (hybEnd[d] >= 0 && p >= hybEnd[d]) { /* put in a separate value for hybrid points */
718f0e73a3dSToby Isaac         pointDepths[p] = 2 * d;
719f0e73a3dSToby Isaac       } else {
720f0e73a3dSToby Isaac         pointDepths[p] = 2 * d + 1;
721f0e73a3dSToby Isaac       }
722f0e73a3dSToby Isaac     }
723a9f1d5b2SMichael Lange   }
7247fab53ddSMatthew G. Knepley   for (p = 0; p < nleaves; ++p) remoteDepths[p] = -1;
725a9f1d5b2SMichael Lange   ierr = PetscSFBcastBegin(sf, MPIU_INT, pointDepths, remoteDepths);CHKERRQ(ierr);
726a9f1d5b2SMichael Lange   ierr = PetscSFBcastEnd(sf, MPIU_INT, pointDepths, remoteDepths);CHKERRQ(ierr);
727bba01988SBarry Smith   /* Count received points in each stratum and compute the internal strata shift */
728f0e73a3dSToby Isaac   ierr = PetscMalloc3(2*(depth+1), &depthRecv, 2*(depth+1), &depthShift, 2*(depth+1), &depthIdx);CHKERRQ(ierr);
729f0e73a3dSToby Isaac   for (d = 0; d < 2*(depth+1); ++d) depthRecv[d] = 0;
7307fab53ddSMatthew G. Knepley   for (p = 0; p < nleaves; ++p) depthRecv[remoteDepths[p]]++;
731f0e73a3dSToby Isaac   depthShift[2*depth+1] = 0;
732f0e73a3dSToby Isaac   for (d = 0; d < 2*depth+1; ++d) depthShift[d] = depthRecv[2 * depth + 1];
733f0e73a3dSToby Isaac   for (d = 0; d < 2*depth; ++d) depthShift[d] += depthRecv[2 * depth];
734f0e73a3dSToby Isaac   depthShift[0] += depthRecv[1];
735f0e73a3dSToby Isaac   for (d = 2; d < 2*depth; ++d) depthShift[d] += depthRecv[1];
736f0e73a3dSToby Isaac   for (d = 2; d < 2*depth; ++d) depthShift[d] += depthRecv[0];
737f0e73a3dSToby Isaac   for (d = 2 * depth-1; d > 2; --d) {
738f0e73a3dSToby Isaac     PetscInt e;
739f0e73a3dSToby Isaac 
740f0e73a3dSToby Isaac     for (e = d -1; e > 1; --e) depthShift[e] += depthRecv[d];
741f0e73a3dSToby Isaac   }
742f0e73a3dSToby Isaac   for (d = 0; d < 2*(depth+1); ++d) {depthIdx[d] = 0;}
743a9f1d5b2SMichael Lange   /* Derive a new local permutation based on stratified indices */
744a9f1d5b2SMichael Lange   ierr = PetscMalloc1(nleaves, &ilocal);CHKERRQ(ierr);
7457fab53ddSMatthew G. Knepley   for (p = 0; p < nleaves; ++p) {
7467fab53ddSMatthew G. Knepley     const PetscInt dep = remoteDepths[p];
7477fab53ddSMatthew G. Knepley 
7487fab53ddSMatthew G. Knepley     ilocal[p] = depthShift[dep] + depthIdx[dep];
7497fab53ddSMatthew G. Knepley     depthIdx[dep]++;
750a9f1d5b2SMichael Lange   }
751a9f1d5b2SMichael Lange   ierr = PetscSFCreate(comm, migrationSF);CHKERRQ(ierr);
752a9f1d5b2SMichael Lange   ierr = PetscObjectSetName((PetscObject) *migrationSF, "Migration SF");CHKERRQ(ierr);
753a9f1d5b2SMichael Lange   ierr = PetscSFSetGraph(*migrationSF, nroots, nleaves, ilocal, PETSC_OWN_POINTER, iremote, PETSC_COPY_VALUES);CHKERRQ(ierr);
754a9f1d5b2SMichael Lange   ierr = PetscFree2(pointDepths,remoteDepths);CHKERRQ(ierr);
755a9f1d5b2SMichael Lange   ierr = PetscFree3(depthRecv, depthShift, depthIdx);CHKERRQ(ierr);
75630b0ce1bSStefano Zampini   ierr = PetscLogEventEnd(DMPLEX_PartStratSF,dm,0,0,0);CHKERRQ(ierr);
757a9f1d5b2SMichael Lange   PetscFunctionReturn(0);
758a9f1d5b2SMichael Lange }
759a9f1d5b2SMichael Lange 
76070034214SMatthew G. Knepley /*@
76170034214SMatthew G. Knepley   DMPlexDistributeField - Distribute field data to match a given PetscSF, usually the SF from mesh distribution
76270034214SMatthew G. Knepley 
763d083f849SBarry Smith   Collective on dm
76470034214SMatthew G. Knepley 
76570034214SMatthew G. Knepley   Input Parameters:
76670034214SMatthew G. Knepley + dm - The DMPlex object
76770034214SMatthew G. Knepley . pointSF - The PetscSF describing the communication pattern
76870034214SMatthew G. Knepley . originalSection - The PetscSection for existing data layout
769cb15cd0eSMatthew G. Knepley - originalVec - The existing data in a local vector
77070034214SMatthew G. Knepley 
77170034214SMatthew G. Knepley   Output Parameters:
77270034214SMatthew G. Knepley + newSection - The PetscSF describing the new data layout
773cb15cd0eSMatthew G. Knepley - newVec - The new data in a local vector
77470034214SMatthew G. Knepley 
77570034214SMatthew G. Knepley   Level: developer
77670034214SMatthew G. Knepley 
77770034214SMatthew G. Knepley .seealso: DMPlexDistribute(), DMPlexDistributeFieldIS(), DMPlexDistributeData()
77870034214SMatthew G. Knepley @*/
77970034214SMatthew G. Knepley PetscErrorCode DMPlexDistributeField(DM dm, PetscSF pointSF, PetscSection originalSection, Vec originalVec, PetscSection newSection, Vec newVec)
78070034214SMatthew G. Knepley {
78170034214SMatthew G. Knepley   PetscSF        fieldSF;
78270034214SMatthew G. Knepley   PetscInt      *remoteOffsets, fieldSize;
78370034214SMatthew G. Knepley   PetscScalar   *originalValues, *newValues;
78470034214SMatthew G. Knepley   PetscErrorCode ierr;
78570034214SMatthew G. Knepley 
78670034214SMatthew G. Knepley   PetscFunctionBegin;
78770034214SMatthew G. Knepley   ierr = PetscLogEventBegin(DMPLEX_DistributeField,dm,0,0,0);CHKERRQ(ierr);
78870034214SMatthew G. Knepley   ierr = PetscSFDistributeSection(pointSF, originalSection, &remoteOffsets, newSection);CHKERRQ(ierr);
78970034214SMatthew G. Knepley 
79070034214SMatthew G. Knepley   ierr = PetscSectionGetStorageSize(newSection, &fieldSize);CHKERRQ(ierr);
79170034214SMatthew G. Knepley   ierr = VecSetSizes(newVec, fieldSize, PETSC_DETERMINE);CHKERRQ(ierr);
79270034214SMatthew G. Knepley   ierr = VecSetType(newVec,dm->vectype);CHKERRQ(ierr);
79370034214SMatthew G. Knepley 
79470034214SMatthew G. Knepley   ierr = VecGetArray(originalVec, &originalValues);CHKERRQ(ierr);
79570034214SMatthew G. Knepley   ierr = VecGetArray(newVec, &newValues);CHKERRQ(ierr);
79670034214SMatthew G. Knepley   ierr = PetscSFCreateSectionSF(pointSF, originalSection, remoteOffsets, newSection, &fieldSF);CHKERRQ(ierr);
7978a713f3bSLawrence Mitchell   ierr = PetscFree(remoteOffsets);CHKERRQ(ierr);
79870034214SMatthew G. Knepley   ierr = PetscSFBcastBegin(fieldSF, MPIU_SCALAR, originalValues, newValues);CHKERRQ(ierr);
79970034214SMatthew G. Knepley   ierr = PetscSFBcastEnd(fieldSF, MPIU_SCALAR, originalValues, newValues);CHKERRQ(ierr);
80070034214SMatthew G. Knepley   ierr = PetscSFDestroy(&fieldSF);CHKERRQ(ierr);
80170034214SMatthew G. Knepley   ierr = VecRestoreArray(newVec, &newValues);CHKERRQ(ierr);
80270034214SMatthew G. Knepley   ierr = VecRestoreArray(originalVec, &originalValues);CHKERRQ(ierr);
80370034214SMatthew G. Knepley   ierr = PetscLogEventEnd(DMPLEX_DistributeField,dm,0,0,0);CHKERRQ(ierr);
80470034214SMatthew G. Knepley   PetscFunctionReturn(0);
80570034214SMatthew G. Knepley }
80670034214SMatthew G. Knepley 
80770034214SMatthew G. Knepley /*@
80870034214SMatthew G. Knepley   DMPlexDistributeFieldIS - Distribute field data to match a given PetscSF, usually the SF from mesh distribution
80970034214SMatthew G. Knepley 
810d083f849SBarry Smith   Collective on dm
81170034214SMatthew G. Knepley 
81270034214SMatthew G. Knepley   Input Parameters:
81370034214SMatthew G. Knepley + dm - The DMPlex object
81470034214SMatthew G. Knepley . pointSF - The PetscSF describing the communication pattern
81570034214SMatthew G. Knepley . originalSection - The PetscSection for existing data layout
81670034214SMatthew G. Knepley - originalIS - The existing data
81770034214SMatthew G. Knepley 
81870034214SMatthew G. Knepley   Output Parameters:
81970034214SMatthew G. Knepley + newSection - The PetscSF describing the new data layout
82070034214SMatthew G. Knepley - newIS - The new data
82170034214SMatthew G. Knepley 
82270034214SMatthew G. Knepley   Level: developer
82370034214SMatthew G. Knepley 
82470034214SMatthew G. Knepley .seealso: DMPlexDistribute(), DMPlexDistributeField(), DMPlexDistributeData()
82570034214SMatthew G. Knepley @*/
82670034214SMatthew G. Knepley PetscErrorCode DMPlexDistributeFieldIS(DM dm, PetscSF pointSF, PetscSection originalSection, IS originalIS, PetscSection newSection, IS *newIS)
82770034214SMatthew G. Knepley {
82870034214SMatthew G. Knepley   PetscSF         fieldSF;
82970034214SMatthew G. Knepley   PetscInt       *newValues, *remoteOffsets, fieldSize;
83070034214SMatthew G. Knepley   const PetscInt *originalValues;
83170034214SMatthew G. Knepley   PetscErrorCode  ierr;
83270034214SMatthew G. Knepley 
83370034214SMatthew G. Knepley   PetscFunctionBegin;
83470034214SMatthew G. Knepley   ierr = PetscLogEventBegin(DMPLEX_DistributeField,dm,0,0,0);CHKERRQ(ierr);
83570034214SMatthew G. Knepley   ierr = PetscSFDistributeSection(pointSF, originalSection, &remoteOffsets, newSection);CHKERRQ(ierr);
83670034214SMatthew G. Knepley 
83770034214SMatthew G. Knepley   ierr = PetscSectionGetStorageSize(newSection, &fieldSize);CHKERRQ(ierr);
838854ce69bSBarry Smith   ierr = PetscMalloc1(fieldSize, &newValues);CHKERRQ(ierr);
83970034214SMatthew G. Knepley 
84070034214SMatthew G. Knepley   ierr = ISGetIndices(originalIS, &originalValues);CHKERRQ(ierr);
84170034214SMatthew G. Knepley   ierr = PetscSFCreateSectionSF(pointSF, originalSection, remoteOffsets, newSection, &fieldSF);CHKERRQ(ierr);
8428a713f3bSLawrence Mitchell   ierr = PetscFree(remoteOffsets);CHKERRQ(ierr);
843aaf8c182SMatthew G. Knepley   ierr = PetscSFBcastBegin(fieldSF, MPIU_INT, (PetscInt *) originalValues, newValues);CHKERRQ(ierr);
844aaf8c182SMatthew G. Knepley   ierr = PetscSFBcastEnd(fieldSF, MPIU_INT, (PetscInt *) originalValues, newValues);CHKERRQ(ierr);
84570034214SMatthew G. Knepley   ierr = PetscSFDestroy(&fieldSF);CHKERRQ(ierr);
84670034214SMatthew G. Knepley   ierr = ISRestoreIndices(originalIS, &originalValues);CHKERRQ(ierr);
84770034214SMatthew G. Knepley   ierr = ISCreateGeneral(PetscObjectComm((PetscObject) pointSF), fieldSize, newValues, PETSC_OWN_POINTER, newIS);CHKERRQ(ierr);
84870034214SMatthew G. Knepley   ierr = PetscLogEventEnd(DMPLEX_DistributeField,dm,0,0,0);CHKERRQ(ierr);
84970034214SMatthew G. Knepley   PetscFunctionReturn(0);
85070034214SMatthew G. Knepley }
85170034214SMatthew G. Knepley 
85270034214SMatthew G. Knepley /*@
85370034214SMatthew G. Knepley   DMPlexDistributeData - Distribute field data to match a given PetscSF, usually the SF from mesh distribution
85470034214SMatthew G. Knepley 
855d083f849SBarry Smith   Collective on dm
85670034214SMatthew G. Knepley 
85770034214SMatthew G. Knepley   Input Parameters:
85870034214SMatthew G. Knepley + dm - The DMPlex object
85970034214SMatthew G. Knepley . pointSF - The PetscSF describing the communication pattern
86070034214SMatthew G. Knepley . originalSection - The PetscSection for existing data layout
86170034214SMatthew G. Knepley . datatype - The type of data
86270034214SMatthew G. Knepley - originalData - The existing data
86370034214SMatthew G. Knepley 
86470034214SMatthew G. Knepley   Output Parameters:
86570034214SMatthew G. Knepley + newSection - The PetscSection describing the new data layout
86670034214SMatthew G. Knepley - newData - The new data
86770034214SMatthew G. Knepley 
86870034214SMatthew G. Knepley   Level: developer
86970034214SMatthew G. Knepley 
87070034214SMatthew G. Knepley .seealso: DMPlexDistribute(), DMPlexDistributeField()
87170034214SMatthew G. Knepley @*/
87270034214SMatthew G. Knepley PetscErrorCode DMPlexDistributeData(DM dm, PetscSF pointSF, PetscSection originalSection, MPI_Datatype datatype, void *originalData, PetscSection newSection, void **newData)
87370034214SMatthew G. Knepley {
87470034214SMatthew G. Knepley   PetscSF        fieldSF;
87570034214SMatthew G. Knepley   PetscInt      *remoteOffsets, fieldSize;
87670034214SMatthew G. Knepley   PetscMPIInt    dataSize;
87770034214SMatthew G. Knepley   PetscErrorCode ierr;
87870034214SMatthew G. Knepley 
87970034214SMatthew G. Knepley   PetscFunctionBegin;
88070034214SMatthew G. Knepley   ierr = PetscLogEventBegin(DMPLEX_DistributeData,dm,0,0,0);CHKERRQ(ierr);
88170034214SMatthew G. Knepley   ierr = PetscSFDistributeSection(pointSF, originalSection, &remoteOffsets, newSection);CHKERRQ(ierr);
88270034214SMatthew G. Knepley 
88370034214SMatthew G. Knepley   ierr = PetscSectionGetStorageSize(newSection, &fieldSize);CHKERRQ(ierr);
88470034214SMatthew G. Knepley   ierr = MPI_Type_size(datatype, &dataSize);CHKERRQ(ierr);
88570034214SMatthew G. Knepley   ierr = PetscMalloc(fieldSize * dataSize, newData);CHKERRQ(ierr);
88670034214SMatthew G. Knepley 
88770034214SMatthew G. Knepley   ierr = PetscSFCreateSectionSF(pointSF, originalSection, remoteOffsets, newSection, &fieldSF);CHKERRQ(ierr);
8888a713f3bSLawrence Mitchell   ierr = PetscFree(remoteOffsets);CHKERRQ(ierr);
88970034214SMatthew G. Knepley   ierr = PetscSFBcastBegin(fieldSF, datatype, originalData, *newData);CHKERRQ(ierr);
89070034214SMatthew G. Knepley   ierr = PetscSFBcastEnd(fieldSF, datatype, originalData, *newData);CHKERRQ(ierr);
89170034214SMatthew G. Knepley   ierr = PetscSFDestroy(&fieldSF);CHKERRQ(ierr);
89270034214SMatthew G. Knepley   ierr = PetscLogEventEnd(DMPLEX_DistributeData,dm,0,0,0);CHKERRQ(ierr);
89370034214SMatthew G. Knepley   PetscFunctionReturn(0);
89470034214SMatthew G. Knepley }
89570034214SMatthew G. Knepley 
89624cc2ca5SMatthew G. Knepley static PetscErrorCode DMPlexDistributeCones(DM dm, PetscSF migrationSF, ISLocalToGlobalMapping original, ISLocalToGlobalMapping renumbering, DM dmParallel)
897cc71bff1SMichael Lange {
898cc71bff1SMichael Lange   DM_Plex               *pmesh = (DM_Plex*) (dmParallel)->data;
899cc71bff1SMichael Lange   MPI_Comm               comm;
900cc71bff1SMichael Lange   PetscSF                coneSF;
901cc71bff1SMichael Lange   PetscSection           originalConeSection, newConeSection;
902ac04eaf7SToby Isaac   PetscInt              *remoteOffsets, *cones, *globCones, *newCones, newConesSize;
903cc71bff1SMichael Lange   PetscBool              flg;
904cc71bff1SMichael Lange   PetscErrorCode         ierr;
905cc71bff1SMichael Lange 
906cc71bff1SMichael Lange   PetscFunctionBegin;
907cc71bff1SMichael Lange   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
9080c86c063SLisandro Dalcin   PetscValidHeaderSpecific(dmParallel, DM_CLASSID, 5);
9090c86c063SLisandro Dalcin   ierr = PetscLogEventBegin(DMPLEX_DistributeCones,dm,0,0,0);CHKERRQ(ierr);
910cc71bff1SMichael Lange   /* Distribute cone section */
911cc71bff1SMichael Lange   ierr = PetscObjectGetComm((PetscObject)dm, &comm);CHKERRQ(ierr);
912cc71bff1SMichael Lange   ierr = DMPlexGetConeSection(dm, &originalConeSection);CHKERRQ(ierr);
913cc71bff1SMichael Lange   ierr = DMPlexGetConeSection(dmParallel, &newConeSection);CHKERRQ(ierr);
914cc71bff1SMichael Lange   ierr = PetscSFDistributeSection(migrationSF, originalConeSection, &remoteOffsets, newConeSection);CHKERRQ(ierr);
915cc71bff1SMichael Lange   ierr = DMSetUp(dmParallel);CHKERRQ(ierr);
916cc71bff1SMichael Lange   {
917cc71bff1SMichael Lange     PetscInt pStart, pEnd, p;
918cc71bff1SMichael Lange 
919cc71bff1SMichael Lange     ierr = PetscSectionGetChart(newConeSection, &pStart, &pEnd);CHKERRQ(ierr);
920cc71bff1SMichael Lange     for (p = pStart; p < pEnd; ++p) {
921cc71bff1SMichael Lange       PetscInt coneSize;
922cc71bff1SMichael Lange       ierr               = PetscSectionGetDof(newConeSection, p, &coneSize);CHKERRQ(ierr);
923cc71bff1SMichael Lange       pmesh->maxConeSize = PetscMax(pmesh->maxConeSize, coneSize);
924cc71bff1SMichael Lange     }
925cc71bff1SMichael Lange   }
926cc71bff1SMichael Lange   /* Communicate and renumber cones */
927cc71bff1SMichael Lange   ierr = PetscSFCreateSectionSF(migrationSF, originalConeSection, remoteOffsets, newConeSection, &coneSF);CHKERRQ(ierr);
9288a713f3bSLawrence Mitchell   ierr = PetscFree(remoteOffsets);CHKERRQ(ierr);
929cc71bff1SMichael Lange   ierr = DMPlexGetCones(dm, &cones);CHKERRQ(ierr);
930ac04eaf7SToby Isaac   if (original) {
931ac04eaf7SToby Isaac     PetscInt numCones;
932ac04eaf7SToby Isaac 
933367003a6SStefano Zampini     ierr = PetscSectionGetStorageSize(originalConeSection,&numCones);CHKERRQ(ierr);
934367003a6SStefano Zampini     ierr = PetscMalloc1(numCones,&globCones);CHKERRQ(ierr);
935ac04eaf7SToby Isaac     ierr = ISLocalToGlobalMappingApplyBlock(original, numCones, cones, globCones);CHKERRQ(ierr);
936367003a6SStefano Zampini   } else {
937ac04eaf7SToby Isaac     globCones = cones;
938ac04eaf7SToby Isaac   }
939cc71bff1SMichael Lange   ierr = DMPlexGetCones(dmParallel, &newCones);CHKERRQ(ierr);
940ac04eaf7SToby Isaac   ierr = PetscSFBcastBegin(coneSF, MPIU_INT, globCones, newCones);CHKERRQ(ierr);
941ac04eaf7SToby Isaac   ierr = PetscSFBcastEnd(coneSF, MPIU_INT, globCones, newCones);CHKERRQ(ierr);
942ac04eaf7SToby Isaac   if (original) {
943ac04eaf7SToby Isaac     ierr = PetscFree(globCones);CHKERRQ(ierr);
944ac04eaf7SToby Isaac   }
945cc71bff1SMichael Lange   ierr = PetscSectionGetStorageSize(newConeSection, &newConesSize);CHKERRQ(ierr);
946cc71bff1SMichael Lange   ierr = ISGlobalToLocalMappingApplyBlock(renumbering, IS_GTOLM_MASK, newConesSize, newCones, NULL, newCones);CHKERRQ(ierr);
94762795ce3SStefano Zampini #if defined(PETSC_USE_DEBUG)
9483533c52bSMatthew G. Knepley   {
9493533c52bSMatthew G. Knepley     PetscInt  p;
9503533c52bSMatthew G. Knepley     PetscBool valid = PETSC_TRUE;
9513533c52bSMatthew G. Knepley     for (p = 0; p < newConesSize; ++p) {
952367003a6SStefano Zampini       if (newCones[p] < 0) {valid = PETSC_FALSE; ierr = PetscPrintf(PETSC_COMM_SELF, "[%d] Point %D not in overlap SF\n", PetscGlobalRank,p);CHKERRQ(ierr);}
9533533c52bSMatthew G. Knepley     }
9543533c52bSMatthew G. Knepley     if (!valid) SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Invalid global to local map");
9553533c52bSMatthew G. Knepley   }
9563533c52bSMatthew G. Knepley #endif
957c5929fdfSBarry Smith   ierr = PetscOptionsHasName(((PetscObject) dm)->options,((PetscObject) dm)->prefix, "-cones_view", &flg);CHKERRQ(ierr);
958cc71bff1SMichael Lange   if (flg) {
959cc71bff1SMichael Lange     ierr = PetscPrintf(comm, "Serial Cone Section:\n");CHKERRQ(ierr);
960a8c5bd36SStefano Zampini     ierr = PetscSectionView(originalConeSection, PETSC_VIEWER_STDOUT_(comm));CHKERRQ(ierr);
961cc71bff1SMichael Lange     ierr = PetscPrintf(comm, "Parallel Cone Section:\n");CHKERRQ(ierr);
962a8c5bd36SStefano Zampini     ierr = PetscSectionView(newConeSection, PETSC_VIEWER_STDOUT_(comm));CHKERRQ(ierr);
963cc71bff1SMichael Lange     ierr = PetscSFView(coneSF, NULL);CHKERRQ(ierr);
964cc71bff1SMichael Lange   }
965cc71bff1SMichael Lange   ierr = DMPlexGetConeOrientations(dm, &cones);CHKERRQ(ierr);
966cc71bff1SMichael Lange   ierr = DMPlexGetConeOrientations(dmParallel, &newCones);CHKERRQ(ierr);
967cc71bff1SMichael Lange   ierr = PetscSFBcastBegin(coneSF, MPIU_INT, cones, newCones);CHKERRQ(ierr);
968cc71bff1SMichael Lange   ierr = PetscSFBcastEnd(coneSF, MPIU_INT, cones, newCones);CHKERRQ(ierr);
969cc71bff1SMichael Lange   ierr = PetscSFDestroy(&coneSF);CHKERRQ(ierr);
970cc71bff1SMichael Lange   ierr = PetscLogEventEnd(DMPLEX_DistributeCones,dm,0,0,0);CHKERRQ(ierr);
971eaf898f9SPatrick Sanan   /* Create supports and stratify DMPlex */
972cc71bff1SMichael Lange   {
973cc71bff1SMichael Lange     PetscInt pStart, pEnd;
974cc71bff1SMichael Lange 
975cc71bff1SMichael Lange     ierr = PetscSectionGetChart(pmesh->coneSection, &pStart, &pEnd);CHKERRQ(ierr);
976cc71bff1SMichael Lange     ierr = PetscSectionSetChart(pmesh->supportSection, pStart, pEnd);CHKERRQ(ierr);
977cc71bff1SMichael Lange   }
978cc71bff1SMichael Lange   ierr = DMPlexSymmetrize(dmParallel);CHKERRQ(ierr);
979cc71bff1SMichael Lange   ierr = DMPlexStratify(dmParallel);CHKERRQ(ierr);
9801cf84007SMatthew G. Knepley   {
9811cf84007SMatthew G. Knepley     PetscBool useCone, useClosure, useAnchors;
9821cf84007SMatthew G. Knepley 
983b0441da4SMatthew G. Knepley     ierr = DMGetBasicAdjacency(dm, &useCone, &useClosure);CHKERRQ(ierr);
984b0441da4SMatthew G. Knepley     ierr = DMSetBasicAdjacency(dmParallel, useCone, useClosure);CHKERRQ(ierr);
9851cf84007SMatthew G. Knepley     ierr = DMPlexGetAdjacencyUseAnchors(dm, &useAnchors);CHKERRQ(ierr);
9861cf84007SMatthew G. Knepley     ierr = DMPlexSetAdjacencyUseAnchors(dmParallel, useAnchors);CHKERRQ(ierr);
9871cf84007SMatthew G. Knepley   }
988cc71bff1SMichael Lange   PetscFunctionReturn(0);
989cc71bff1SMichael Lange }
990cc71bff1SMichael Lange 
99124cc2ca5SMatthew G. Knepley static PetscErrorCode DMPlexDistributeCoordinates(DM dm, PetscSF migrationSF, DM dmParallel)
9920df0e737SMichael Lange {
9930df0e737SMichael Lange   MPI_Comm         comm;
9940df0e737SMichael Lange   PetscSection     originalCoordSection, newCoordSection;
9950df0e737SMichael Lange   Vec              originalCoordinates, newCoordinates;
9960df0e737SMichael Lange   PetscInt         bs;
99790b157c4SStefano Zampini   PetscBool        isper;
9980df0e737SMichael Lange   const char      *name;
9990df0e737SMichael Lange   const PetscReal *maxCell, *L;
10005dc8c3f7SMatthew G. Knepley   const DMBoundaryType *bd;
10010df0e737SMichael Lange   PetscErrorCode   ierr;
10020df0e737SMichael Lange 
10030df0e737SMichael Lange   PetscFunctionBegin;
10040df0e737SMichael Lange   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
10050c86c063SLisandro Dalcin   PetscValidHeaderSpecific(dmParallel, DM_CLASSID, 3);
10060df0e737SMichael Lange 
10070df0e737SMichael Lange   ierr = PetscObjectGetComm((PetscObject)dm, &comm);CHKERRQ(ierr);
10080df0e737SMichael Lange   ierr = DMGetCoordinateSection(dm, &originalCoordSection);CHKERRQ(ierr);
10090df0e737SMichael Lange   ierr = DMGetCoordinateSection(dmParallel, &newCoordSection);CHKERRQ(ierr);
10100df0e737SMichael Lange   ierr = DMGetCoordinatesLocal(dm, &originalCoordinates);CHKERRQ(ierr);
10110df0e737SMichael Lange   if (originalCoordinates) {
10128b9ced59SLisandro Dalcin     ierr = VecCreate(PETSC_COMM_SELF, &newCoordinates);CHKERRQ(ierr);
10130df0e737SMichael Lange     ierr = PetscObjectGetName((PetscObject) originalCoordinates, &name);CHKERRQ(ierr);
10140df0e737SMichael Lange     ierr = PetscObjectSetName((PetscObject) newCoordinates, name);CHKERRQ(ierr);
10150df0e737SMichael Lange 
10160df0e737SMichael Lange     ierr = DMPlexDistributeField(dm, migrationSF, originalCoordSection, originalCoordinates, newCoordSection, newCoordinates);CHKERRQ(ierr);
10170df0e737SMichael Lange     ierr = DMSetCoordinatesLocal(dmParallel, newCoordinates);CHKERRQ(ierr);
10180df0e737SMichael Lange     ierr = VecGetBlockSize(originalCoordinates, &bs);CHKERRQ(ierr);
10190df0e737SMichael Lange     ierr = VecSetBlockSize(newCoordinates, bs);CHKERRQ(ierr);
10200df0e737SMichael Lange     ierr = VecDestroy(&newCoordinates);CHKERRQ(ierr);
10210df0e737SMichael Lange   }
102290b157c4SStefano Zampini   ierr = DMGetPeriodicity(dm, &isper, &maxCell, &L, &bd);CHKERRQ(ierr);
102390b157c4SStefano Zampini   ierr = DMSetPeriodicity(dmParallel, isper, maxCell, L, bd);CHKERRQ(ierr);
10240df0e737SMichael Lange   PetscFunctionReturn(0);
10250df0e737SMichael Lange }
10260df0e737SMichael Lange 
102724cc2ca5SMatthew G. Knepley static PetscErrorCode DMPlexDistributeLabels(DM dm, PetscSF migrationSF, DM dmParallel)
10280df0e737SMichael Lange {
1029df0420ecSMatthew G. Knepley   DM_Plex         *mesh = (DM_Plex*) dm->data;
10300df0e737SMichael Lange   MPI_Comm         comm;
10317980c9d4SMatthew G. Knepley   DMLabel          depthLabel;
10320df0e737SMichael Lange   PetscMPIInt      rank;
10337980c9d4SMatthew G. Knepley   PetscInt         depth, d, numLabels, numLocalLabels, l;
1034df0420ecSMatthew G. Knepley   PetscBool        hasLabels = PETSC_FALSE, lsendDepth, sendDepth;
1035df0420ecSMatthew G. Knepley   PetscObjectState depthState = -1;
10360df0e737SMichael Lange   PetscErrorCode   ierr;
10370df0e737SMichael Lange 
10380df0e737SMichael Lange   PetscFunctionBegin;
10390df0e737SMichael Lange   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
10400c86c063SLisandro Dalcin   PetscValidHeaderSpecific(dmParallel, DM_CLASSID, 3);
10410c86c063SLisandro Dalcin 
10420df0e737SMichael Lange   ierr = PetscLogEventBegin(DMPLEX_DistributeLabels,dm,0,0,0);CHKERRQ(ierr);
10430df0e737SMichael Lange   ierr = PetscObjectGetComm((PetscObject)dm, &comm);CHKERRQ(ierr);
10440df0e737SMichael Lange   ierr = MPI_Comm_rank(comm, &rank);CHKERRQ(ierr);
10450df0e737SMichael Lange 
1046df0420ecSMatthew G. Knepley   /* If the user has changed the depth label, communicate it instead */
10477980c9d4SMatthew G. Knepley   ierr = DMPlexGetDepth(dm, &depth);CHKERRQ(ierr);
10487980c9d4SMatthew G. Knepley   ierr = DMPlexGetDepthLabel(dm, &depthLabel);CHKERRQ(ierr);
1049d67d17b1SMatthew G. Knepley   if (depthLabel) {ierr = PetscObjectStateGet((PetscObject) depthLabel, &depthState);CHKERRQ(ierr);}
1050df0420ecSMatthew G. Knepley   lsendDepth = mesh->depthState != depthState ? PETSC_TRUE : PETSC_FALSE;
1051b2566f29SBarry Smith   ierr = MPIU_Allreduce(&lsendDepth, &sendDepth, 1, MPIU_BOOL, MPI_LOR, comm);CHKERRQ(ierr);
1052df0420ecSMatthew G. Knepley   if (sendDepth) {
1053a7998027SVaclav Hapla     ierr = DMPlexGetDepthLabel(dmParallel, &dmParallel->depthLabel);CHKERRQ(ierr);
1054a7998027SVaclav Hapla     ierr = DMRemoveLabelBySelf(dmParallel, &dmParallel->depthLabel, PETSC_FALSE);CHKERRQ(ierr);
1055df0420ecSMatthew G. Knepley   }
1056d995df53SMatthew G. Knepley   /* Everyone must have either the same number of labels, or none */
1057c58f1c22SToby Isaac   ierr = DMGetNumLabels(dm, &numLocalLabels);CHKERRQ(ierr);
1058d995df53SMatthew G. Knepley   numLabels = numLocalLabels;
10590df0e737SMichael Lange   ierr = MPI_Bcast(&numLabels, 1, MPIU_INT, 0, comm);CHKERRQ(ierr);
1060627847f0SMatthew G. Knepley   if (numLabels == numLocalLabels) hasLabels = PETSC_TRUE;
10615d80c0bfSVaclav Hapla   for (l = 0; l < numLabels; ++l) {
1062bdd2d751SMichael Lange     DMLabel     label = NULL, labelNew = NULL;
106383e10cb3SLisandro Dalcin     PetscBool   isDepth, lisOutput = PETSC_TRUE, isOutput;
1064d67d17b1SMatthew G. Knepley     const char *name = NULL;
10650df0e737SMichael Lange 
1066d67d17b1SMatthew G. Knepley     if (hasLabels) {
1067d67d17b1SMatthew G. Knepley       ierr = DMGetLabelByNum(dm, l, &label);CHKERRQ(ierr);
10680df0e737SMichael Lange       /* Skip "depth" because it is recreated */
1069d67d17b1SMatthew G. Knepley       ierr = PetscObjectGetName((PetscObject) label, &name);CHKERRQ(ierr);
1070d67d17b1SMatthew G. Knepley       ierr = PetscStrcmp(name, "depth", &isDepth);CHKERRQ(ierr);
1071d67d17b1SMatthew G. Knepley     }
107283e10cb3SLisandro Dalcin     ierr = MPI_Bcast(&isDepth, 1, MPIU_BOOL, 0, comm);CHKERRQ(ierr);
107383e10cb3SLisandro Dalcin     if (isDepth && !sendDepth) continue;
1074bdd2d751SMichael Lange     ierr = DMLabelDistribute(label, migrationSF, &labelNew);CHKERRQ(ierr);
107583e10cb3SLisandro Dalcin     if (isDepth) {
10767980c9d4SMatthew G. Knepley       /* Put in any missing strata which can occur if users are managing the depth label themselves */
10777980c9d4SMatthew G. Knepley       PetscInt gdepth;
10787980c9d4SMatthew G. Knepley 
10797980c9d4SMatthew G. Knepley       ierr = MPIU_Allreduce(&depth, &gdepth, 1, MPIU_INT, MPI_MAX, comm);CHKERRQ(ierr);
10807980c9d4SMatthew G. Knepley       if ((depth >= 0) && (gdepth != depth)) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Inconsistent Plex depth %d != %d", depth, gdepth);
10817980c9d4SMatthew G. Knepley       for (d = 0; d <= gdepth; ++d) {
10827980c9d4SMatthew G. Knepley         PetscBool has;
10837980c9d4SMatthew G. Knepley 
10847980c9d4SMatthew G. Knepley         ierr = DMLabelHasStratum(labelNew, d, &has);CHKERRQ(ierr);
108583e10cb3SLisandro Dalcin         if (!has) {ierr = DMLabelAddStratum(labelNew, d);CHKERRQ(ierr);}
10867980c9d4SMatthew G. Knepley       }
10877980c9d4SMatthew G. Knepley     }
1088c58f1c22SToby Isaac     ierr = DMAddLabel(dmParallel, labelNew);CHKERRQ(ierr);
108983e10cb3SLisandro Dalcin     /* Put the output flag in the new label */
1090d67d17b1SMatthew G. Knepley     if (hasLabels) {ierr = DMGetLabelOutput(dm, name, &lisOutput);CHKERRQ(ierr);}
109183e10cb3SLisandro Dalcin     ierr = MPIU_Allreduce(&lisOutput, &isOutput, 1, MPIU_BOOL, MPI_LAND, comm);CHKERRQ(ierr);
1092d67d17b1SMatthew G. Knepley     ierr = PetscObjectGetName((PetscObject) labelNew, &name);CHKERRQ(ierr);
1093d67d17b1SMatthew G. Knepley     ierr = DMSetLabelOutput(dmParallel, name, isOutput);CHKERRQ(ierr);
109408f633c4SVaclav Hapla     ierr = DMLabelDestroy(&labelNew);CHKERRQ(ierr);
10950df0e737SMichael Lange   }
10960df0e737SMichael Lange   ierr = PetscLogEventEnd(DMPLEX_DistributeLabels,dm,0,0,0);CHKERRQ(ierr);
10970df0e737SMichael Lange   PetscFunctionReturn(0);
10980df0e737SMichael Lange }
10990df0e737SMichael Lange 
1100d80ece95SMatthew G. Knepley /* Set hybrid and ghost state of points */
110124cc2ca5SMatthew G. Knepley static PetscErrorCode DMPlexDistributeSetupHybrid(DM dm, PetscSF migrationSF, ISLocalToGlobalMapping renumbering, DM dmParallel)
11029734c634SMichael Lange {
11039734c634SMichael Lange   DM_Plex        *mesh  = (DM_Plex*) dm->data;
11049734c634SMichael Lange   DM_Plex        *pmesh = (DM_Plex*) (dmParallel)->data;
1105d80ece95SMatthew G. Knepley   PetscInt       *isHybrid, *isHybridParallel; /* 0 for normal, 1 for hybrid, 2 for ghost cell */
1106f0e73a3dSToby Isaac   PetscInt        dim, depth, d;
1107d80ece95SMatthew G. Knepley   PetscInt        pStart, pEnd, pStartP, pEndP, gcStart, gcEnd;
11089734c634SMichael Lange   PetscErrorCode  ierr;
11099734c634SMichael Lange 
11109734c634SMichael Lange   PetscFunctionBegin;
11119734c634SMichael Lange   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
11120c86c063SLisandro Dalcin   PetscValidHeaderSpecific(dmParallel, DM_CLASSID, 3);
11139734c634SMichael Lange 
11149734c634SMichael Lange   ierr = DMGetDimension(dm, &dim);CHKERRQ(ierr);
11159734c634SMichael Lange   ierr = DMPlexGetDepth(dm, &depth);CHKERRQ(ierr);
1116f0e73a3dSToby Isaac   ierr = DMPlexGetChart(dm,&pStart,&pEnd);CHKERRQ(ierr);
1117f0e73a3dSToby Isaac   ierr = DMPlexGetChart(dmParallel,&pStartP,&pEndP);CHKERRQ(ierr);
1118d80ece95SMatthew G. Knepley   ierr = DMPlexGetGhostCellStratum(dm, &gcStart, &gcEnd);CHKERRQ(ierr);
1119f0e73a3dSToby Isaac   ierr = PetscCalloc2(pEnd-pStart,&isHybrid,pEndP-pStartP,&isHybridParallel);CHKERRQ(ierr);
1120f0e73a3dSToby Isaac   for (d = 0; d <= depth; d++) {
1121d80ece95SMatthew G. Knepley     PetscInt hybridMax = (depth == 1 && d == 1) ? mesh->hybridPointMax[dim] : mesh->hybridPointMax[d], p;
11229734c634SMichael Lange 
1123f0e73a3dSToby Isaac     if (hybridMax >= 0) {
1124d80ece95SMatthew G. Knepley       PetscInt sStart, sEnd;
11259734c634SMichael Lange 
1126f0e73a3dSToby Isaac       ierr = DMPlexGetDepthStratum(dm,d,&sStart,&sEnd);CHKERRQ(ierr);
1127d80ece95SMatthew G. Knepley       for (p = hybridMax; p < sEnd; p++) isHybrid[p-pStart] = 1;
11289734c634SMichael Lange     }
1129d80ece95SMatthew G. Knepley     if (d == depth) for (p = gcStart; p < gcEnd; ++p) isHybrid[p-pStart] = 2;
11309734c634SMichael Lange   }
1131d80ece95SMatthew G. Knepley   ierr = PetscSFBcastBegin(migrationSF,MPIU_INT,isHybrid,isHybridParallel);CHKERRQ(ierr);
1132d80ece95SMatthew G. Knepley   ierr = PetscSFBcastEnd(migrationSF,MPIU_INT,isHybrid,isHybridParallel);CHKERRQ(ierr);
1133f0e73a3dSToby Isaac   for (d = 0; d <= dim; d++) pmesh->hybridPointMax[d] = -1;
1134f0e73a3dSToby Isaac   for (d = 0; d <= depth; d++) {
1135f0e73a3dSToby Isaac     PetscInt sStart, sEnd, p, dd;
1136f0e73a3dSToby Isaac 
1137f0e73a3dSToby Isaac     ierr = DMPlexGetDepthStratum(dmParallel,d,&sStart,&sEnd);CHKERRQ(ierr);
1138f0e73a3dSToby Isaac     dd = (depth == 1 && d == 1) ? dim : d;
1139f0e73a3dSToby Isaac     for (p = sStart; p < sEnd; p++) {
1140d80ece95SMatthew G. Knepley       if (isHybridParallel[p-pStartP] == 1) {
1141f0e73a3dSToby Isaac         pmesh->hybridPointMax[dd] = p;
1142f0e73a3dSToby Isaac         break;
1143f0e73a3dSToby Isaac       }
1144d80ece95SMatthew G. Knepley       if (d == depth && isHybridParallel[p-pStartP] == 2) {
1145d80ece95SMatthew G. Knepley         ierr = DMPlexSetGhostCellStratum(dmParallel, p, PETSC_DETERMINE);CHKERRQ(ierr);
1146d80ece95SMatthew G. Knepley         break;
1147d80ece95SMatthew G. Knepley       }
1148f0e73a3dSToby Isaac     }
1149f0e73a3dSToby Isaac   }
1150f0e73a3dSToby Isaac   ierr = PetscFree2(isHybrid,isHybridParallel);CHKERRQ(ierr);
11519734c634SMichael Lange   PetscFunctionReturn(0);
11529734c634SMichael Lange }
11530df0e737SMichael Lange 
115424cc2ca5SMatthew G. Knepley static PetscErrorCode DMPlexDistributeSetupTree(DM dm, PetscSF migrationSF, ISLocalToGlobalMapping original, ISLocalToGlobalMapping renumbering, DM dmParallel)
1155a6f36705SMichael Lange {
115615078cd4SMichael Lange   DM_Plex        *mesh  = (DM_Plex*) dm->data;
115715078cd4SMichael Lange   DM_Plex        *pmesh = (DM_Plex*) (dmParallel)->data;
1158a6f36705SMichael Lange   MPI_Comm        comm;
1159a6f36705SMichael Lange   DM              refTree;
1160a6f36705SMichael Lange   PetscSection    origParentSection, newParentSection;
1161a6f36705SMichael Lange   PetscInt        *origParents, *origChildIDs;
1162a6f36705SMichael Lange   PetscBool       flg;
1163a6f36705SMichael Lange   PetscErrorCode  ierr;
1164a6f36705SMichael Lange 
1165a6f36705SMichael Lange   PetscFunctionBegin;
1166a6f36705SMichael Lange   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
11670c86c063SLisandro Dalcin   PetscValidHeaderSpecific(dmParallel, DM_CLASSID, 5);
1168a6f36705SMichael Lange   ierr = PetscObjectGetComm((PetscObject)dm, &comm);CHKERRQ(ierr);
1169a6f36705SMichael Lange 
1170a6f36705SMichael Lange   /* Set up tree */
1171a6f36705SMichael Lange   ierr = DMPlexGetReferenceTree(dm,&refTree);CHKERRQ(ierr);
1172a6f36705SMichael Lange   ierr = DMPlexSetReferenceTree(dmParallel,refTree);CHKERRQ(ierr);
1173a6f36705SMichael Lange   ierr = DMPlexGetTree(dm,&origParentSection,&origParents,&origChildIDs,NULL,NULL);CHKERRQ(ierr);
1174a6f36705SMichael Lange   if (origParentSection) {
1175a6f36705SMichael Lange     PetscInt        pStart, pEnd;
117608633170SToby Isaac     PetscInt        *newParents, *newChildIDs, *globParents;
1177a6f36705SMichael Lange     PetscInt        *remoteOffsetsParents, newParentSize;
1178a6f36705SMichael Lange     PetscSF         parentSF;
1179a6f36705SMichael Lange 
1180a6f36705SMichael Lange     ierr = DMPlexGetChart(dmParallel, &pStart, &pEnd);CHKERRQ(ierr);
1181a6f36705SMichael Lange     ierr = PetscSectionCreate(PetscObjectComm((PetscObject)dmParallel),&newParentSection);CHKERRQ(ierr);
1182a6f36705SMichael Lange     ierr = PetscSectionSetChart(newParentSection,pStart,pEnd);CHKERRQ(ierr);
1183a6f36705SMichael Lange     ierr = PetscSFDistributeSection(migrationSF, origParentSection, &remoteOffsetsParents, newParentSection);CHKERRQ(ierr);
1184a6f36705SMichael Lange     ierr = PetscSFCreateSectionSF(migrationSF, origParentSection, remoteOffsetsParents, newParentSection, &parentSF);CHKERRQ(ierr);
11858a713f3bSLawrence Mitchell     ierr = PetscFree(remoteOffsetsParents);CHKERRQ(ierr);
1186a6f36705SMichael Lange     ierr = PetscSectionGetStorageSize(newParentSection,&newParentSize);CHKERRQ(ierr);
1187a6f36705SMichael Lange     ierr = PetscMalloc2(newParentSize,&newParents,newParentSize,&newChildIDs);CHKERRQ(ierr);
118808633170SToby Isaac     if (original) {
118908633170SToby Isaac       PetscInt numParents;
119008633170SToby Isaac 
119108633170SToby Isaac       ierr = PetscSectionGetStorageSize(origParentSection,&numParents);CHKERRQ(ierr);
119208633170SToby Isaac       ierr = PetscMalloc1(numParents,&globParents);CHKERRQ(ierr);
119308633170SToby Isaac       ierr = ISLocalToGlobalMappingApplyBlock(original, numParents, origParents, globParents);CHKERRQ(ierr);
119408633170SToby Isaac     }
119508633170SToby Isaac     else {
119608633170SToby Isaac       globParents = origParents;
119708633170SToby Isaac     }
119808633170SToby Isaac     ierr = PetscSFBcastBegin(parentSF, MPIU_INT, globParents, newParents);CHKERRQ(ierr);
119908633170SToby Isaac     ierr = PetscSFBcastEnd(parentSF, MPIU_INT, globParents, newParents);CHKERRQ(ierr);
120008633170SToby Isaac     if (original) {
120108633170SToby Isaac       ierr = PetscFree(globParents);CHKERRQ(ierr);
120208633170SToby Isaac     }
1203a6f36705SMichael Lange     ierr = PetscSFBcastBegin(parentSF, MPIU_INT, origChildIDs, newChildIDs);CHKERRQ(ierr);
1204a6f36705SMichael Lange     ierr = PetscSFBcastEnd(parentSF, MPIU_INT, origChildIDs, newChildIDs);CHKERRQ(ierr);
1205a6f36705SMichael Lange     ierr = ISGlobalToLocalMappingApplyBlock(renumbering,IS_GTOLM_MASK, newParentSize, newParents, NULL, newParents);CHKERRQ(ierr);
120662795ce3SStefano Zampini #if defined(PETSC_USE_DEBUG)
12074a54e071SToby Isaac     {
12084a54e071SToby Isaac       PetscInt  p;
12094a54e071SToby Isaac       PetscBool valid = PETSC_TRUE;
12104a54e071SToby Isaac       for (p = 0; p < newParentSize; ++p) {
12114a54e071SToby Isaac         if (newParents[p] < 0) {valid = PETSC_FALSE; ierr = PetscPrintf(PETSC_COMM_SELF, "Point %d not in overlap SF\n", p);CHKERRQ(ierr);}
12124a54e071SToby Isaac       }
12134a54e071SToby Isaac       if (!valid) SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Invalid global to local map");
12144a54e071SToby Isaac     }
12154a54e071SToby Isaac #endif
1216c5929fdfSBarry Smith     ierr = PetscOptionsHasName(((PetscObject) dm)->options,((PetscObject) dm)->prefix, "-parents_view", &flg);CHKERRQ(ierr);
1217a6f36705SMichael Lange     if (flg) {
1218a6f36705SMichael Lange       ierr = PetscPrintf(comm, "Serial Parent Section: \n");CHKERRQ(ierr);
1219a8c5bd36SStefano Zampini       ierr = PetscSectionView(origParentSection, PETSC_VIEWER_STDOUT_(comm));CHKERRQ(ierr);
1220a6f36705SMichael Lange       ierr = PetscPrintf(comm, "Parallel Parent Section: \n");CHKERRQ(ierr);
1221a8c5bd36SStefano Zampini       ierr = PetscSectionView(newParentSection, PETSC_VIEWER_STDOUT_(comm));CHKERRQ(ierr);
1222a6f36705SMichael Lange       ierr = PetscSFView(parentSF, NULL);CHKERRQ(ierr);
1223a6f36705SMichael Lange     }
1224a6f36705SMichael Lange     ierr = DMPlexSetTree(dmParallel,newParentSection,newParents,newChildIDs);CHKERRQ(ierr);
1225a6f36705SMichael Lange     ierr = PetscSectionDestroy(&newParentSection);CHKERRQ(ierr);
1226a6f36705SMichael Lange     ierr = PetscFree2(newParents,newChildIDs);CHKERRQ(ierr);
1227a6f36705SMichael Lange     ierr = PetscSFDestroy(&parentSF);CHKERRQ(ierr);
1228a6f36705SMichael Lange   }
122915078cd4SMichael Lange   pmesh->useAnchors = mesh->useAnchors;
1230a6f36705SMichael Lange   PetscFunctionReturn(0);
1231a6f36705SMichael Lange }
12320df0e737SMichael Lange 
123324cc2ca5SMatthew G. Knepley PETSC_UNUSED static PetscErrorCode DMPlexDistributeSF(DM dm, PetscSF migrationSF, DM dmParallel)
12344eca1733SMichael Lange {
12359852e123SBarry Smith   PetscMPIInt            rank, size;
12364eca1733SMichael Lange   MPI_Comm               comm;
12374eca1733SMichael Lange   PetscErrorCode         ierr;
12384eca1733SMichael Lange 
12394eca1733SMichael Lange   PetscFunctionBegin;
12404eca1733SMichael Lange   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
12410c86c063SLisandro Dalcin   PetscValidHeaderSpecific(dmParallel, DM_CLASSID, 3);
12424eca1733SMichael Lange 
12434eca1733SMichael Lange   /* Create point SF for parallel mesh */
12444eca1733SMichael Lange   ierr = PetscLogEventBegin(DMPLEX_DistributeSF,dm,0,0,0);CHKERRQ(ierr);
12454eca1733SMichael Lange   ierr = PetscObjectGetComm((PetscObject)dm, &comm);CHKERRQ(ierr);
12464eca1733SMichael Lange   ierr = MPI_Comm_rank(comm, &rank);CHKERRQ(ierr);
12479852e123SBarry Smith   ierr = MPI_Comm_size(comm, &size);CHKERRQ(ierr);
12484eca1733SMichael Lange   {
12494eca1733SMichael Lange     const PetscInt *leaves;
12504eca1733SMichael Lange     PetscSFNode    *remotePoints, *rowners, *lowners;
12514eca1733SMichael Lange     PetscInt        numRoots, numLeaves, numGhostPoints = 0, p, gp, *ghostPoints;
12524eca1733SMichael Lange     PetscInt        pStart, pEnd;
12534eca1733SMichael Lange 
12544eca1733SMichael Lange     ierr = DMPlexGetChart(dmParallel, &pStart, &pEnd);CHKERRQ(ierr);
12554eca1733SMichael Lange     ierr = PetscSFGetGraph(migrationSF, &numRoots, &numLeaves, &leaves, NULL);CHKERRQ(ierr);
12564eca1733SMichael Lange     ierr = PetscMalloc2(numRoots,&rowners,numLeaves,&lowners);CHKERRQ(ierr);
12574eca1733SMichael Lange     for (p=0; p<numRoots; p++) {
12584eca1733SMichael Lange       rowners[p].rank  = -1;
12594eca1733SMichael Lange       rowners[p].index = -1;
12604eca1733SMichael Lange     }
12614eca1733SMichael Lange     ierr = PetscSFBcastBegin(migrationSF, MPIU_2INT, rowners, lowners);CHKERRQ(ierr);
12624eca1733SMichael Lange     ierr = PetscSFBcastEnd(migrationSF, MPIU_2INT, rowners, lowners);CHKERRQ(ierr);
12634eca1733SMichael Lange     for (p = 0; p < numLeaves; ++p) {
12644eca1733SMichael Lange       if (lowners[p].rank < 0 || lowners[p].rank == rank) { /* Either put in a bid or we know we own it */
12654eca1733SMichael Lange         lowners[p].rank  = rank;
12664eca1733SMichael Lange         lowners[p].index = leaves ? leaves[p] : p;
12674eca1733SMichael Lange       } else if (lowners[p].rank >= 0) { /* Point already claimed so flag so that MAXLOC does not listen to us */
12684eca1733SMichael Lange         lowners[p].rank  = -2;
12694eca1733SMichael Lange         lowners[p].index = -2;
12704eca1733SMichael Lange       }
12714eca1733SMichael Lange     }
12724eca1733SMichael Lange     for (p=0; p<numRoots; p++) { /* Root must not participate in the rediction, flag so that MAXLOC does not use */
12734eca1733SMichael Lange       rowners[p].rank  = -3;
12744eca1733SMichael Lange       rowners[p].index = -3;
12754eca1733SMichael Lange     }
12764eca1733SMichael Lange     ierr = PetscSFReduceBegin(migrationSF, MPIU_2INT, lowners, rowners, MPI_MAXLOC);CHKERRQ(ierr);
12774eca1733SMichael Lange     ierr = PetscSFReduceEnd(migrationSF, MPIU_2INT, lowners, rowners, MPI_MAXLOC);CHKERRQ(ierr);
12784eca1733SMichael Lange     ierr = PetscSFBcastBegin(migrationSF, MPIU_2INT, rowners, lowners);CHKERRQ(ierr);
12794eca1733SMichael Lange     ierr = PetscSFBcastEnd(migrationSF, MPIU_2INT, rowners, lowners);CHKERRQ(ierr);
12804eca1733SMichael Lange     for (p = 0; p < numLeaves; ++p) {
12814eca1733SMichael Lange       if (lowners[p].rank < 0 || lowners[p].index < 0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Cell partition corrupt: point not claimed");
12824eca1733SMichael Lange       if (lowners[p].rank != rank) ++numGhostPoints;
12834eca1733SMichael Lange     }
12844eca1733SMichael Lange     ierr = PetscMalloc1(numGhostPoints, &ghostPoints);CHKERRQ(ierr);
12854eca1733SMichael Lange     ierr = PetscMalloc1(numGhostPoints, &remotePoints);CHKERRQ(ierr);
12864eca1733SMichael Lange     for (p = 0, gp = 0; p < numLeaves; ++p) {
12874eca1733SMichael Lange       if (lowners[p].rank != rank) {
12884eca1733SMichael Lange         ghostPoints[gp]        = leaves ? leaves[p] : p;
12894eca1733SMichael Lange         remotePoints[gp].rank  = lowners[p].rank;
12904eca1733SMichael Lange         remotePoints[gp].index = lowners[p].index;
12914eca1733SMichael Lange         ++gp;
12924eca1733SMichael Lange       }
12934eca1733SMichael Lange     }
12944eca1733SMichael Lange     ierr = PetscFree2(rowners,lowners);CHKERRQ(ierr);
12954eca1733SMichael Lange     ierr = PetscSFSetGraph((dmParallel)->sf, pEnd - pStart, numGhostPoints, ghostPoints, PETSC_OWN_POINTER, remotePoints, PETSC_OWN_POINTER);CHKERRQ(ierr);
12964eca1733SMichael Lange     ierr = PetscSFSetFromOptions((dmParallel)->sf);CHKERRQ(ierr);
12974eca1733SMichael Lange   }
12981cf84007SMatthew G. Knepley   {
12991cf84007SMatthew G. Knepley     PetscBool useCone, useClosure, useAnchors;
13001cf84007SMatthew G. Knepley 
1301b0441da4SMatthew G. Knepley     ierr = DMGetBasicAdjacency(dm, &useCone, &useClosure);CHKERRQ(ierr);
1302b0441da4SMatthew G. Knepley     ierr = DMSetBasicAdjacency(dmParallel, useCone, useClosure);CHKERRQ(ierr);
13031cf84007SMatthew G. Knepley     ierr = DMPlexGetAdjacencyUseAnchors(dm, &useAnchors);CHKERRQ(ierr);
13041cf84007SMatthew G. Knepley     ierr = DMPlexSetAdjacencyUseAnchors(dmParallel, useAnchors);CHKERRQ(ierr);
13051cf84007SMatthew G. Knepley   }
13064eca1733SMichael Lange   ierr = PetscLogEventEnd(DMPLEX_DistributeSF,dm,0,0,0);CHKERRQ(ierr);
13074eca1733SMichael Lange   PetscFunctionReturn(0);
13084eca1733SMichael Lange }
13094eca1733SMichael Lange 
131098ba2d7fSLawrence Mitchell /*@
131198ba2d7fSLawrence Mitchell   DMPlexSetPartitionBalance - Should distribution of the DM attempt to balance the shared point partition?
131298ba2d7fSLawrence Mitchell 
131398ba2d7fSLawrence Mitchell   Input Parameters:
131498ba2d7fSLawrence Mitchell + dm - The DMPlex object
131598ba2d7fSLawrence Mitchell - flg - Balance the partition?
131698ba2d7fSLawrence Mitchell 
131798ba2d7fSLawrence Mitchell   Level: intermediate
131898ba2d7fSLawrence Mitchell 
131998ba2d7fSLawrence Mitchell .seealso: DMPlexDistribute(), DMPlexGetPartitionBalance()
132098ba2d7fSLawrence Mitchell @*/
132198ba2d7fSLawrence Mitchell PetscErrorCode DMPlexSetPartitionBalance(DM dm, PetscBool flg)
132298ba2d7fSLawrence Mitchell {
132398ba2d7fSLawrence Mitchell   DM_Plex *mesh = (DM_Plex *)dm->data;
132498ba2d7fSLawrence Mitchell 
132598ba2d7fSLawrence Mitchell   PetscFunctionBegin;
132698ba2d7fSLawrence Mitchell   mesh->partitionBalance = flg;
132798ba2d7fSLawrence Mitchell   PetscFunctionReturn(0);
132898ba2d7fSLawrence Mitchell }
132998ba2d7fSLawrence Mitchell 
133098ba2d7fSLawrence Mitchell /*@
133198ba2d7fSLawrence Mitchell   DMPlexGetPartitionBalance - Does distribution of the DM attempt to balance the shared point partition?
133298ba2d7fSLawrence Mitchell 
133398ba2d7fSLawrence Mitchell   Input Parameter:
1334a2b725a8SWilliam Gropp . dm - The DMPlex object
133598ba2d7fSLawrence Mitchell 
133698ba2d7fSLawrence Mitchell   Output Parameter:
1337a2b725a8SWilliam Gropp . flg - Balance the partition?
133898ba2d7fSLawrence Mitchell 
133998ba2d7fSLawrence Mitchell   Level: intermediate
134098ba2d7fSLawrence Mitchell 
134198ba2d7fSLawrence Mitchell .seealso: DMPlexDistribute(), DMPlexSetPartitionBalance()
134298ba2d7fSLawrence Mitchell @*/
134398ba2d7fSLawrence Mitchell PetscErrorCode DMPlexGetPartitionBalance(DM dm, PetscBool *flg)
134498ba2d7fSLawrence Mitchell {
134598ba2d7fSLawrence Mitchell   DM_Plex *mesh = (DM_Plex *)dm->data;
134698ba2d7fSLawrence Mitchell 
134798ba2d7fSLawrence Mitchell   PetscFunctionBegin;
134898ba2d7fSLawrence Mitchell   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
1349534a8f05SLisandro Dalcin   PetscValidBoolPointer(flg, 2);
135098ba2d7fSLawrence Mitchell   *flg = mesh->partitionBalance;
135198ba2d7fSLawrence Mitchell   PetscFunctionReturn(0);
135298ba2d7fSLawrence Mitchell }
135398ba2d7fSLawrence Mitchell 
1354fc02256fSLawrence Mitchell typedef struct {
1355fc02256fSLawrence Mitchell   PetscInt vote, rank, index;
1356fc02256fSLawrence Mitchell } Petsc3Int;
1357fc02256fSLawrence Mitchell 
1358fc02256fSLawrence Mitchell /* MaxLoc, but carry a third piece of information around */
1359fc02256fSLawrence Mitchell static void MaxLocCarry(void *in_, void *inout_, PetscMPIInt *len_, MPI_Datatype *dtype)
1360fc02256fSLawrence Mitchell {
1361fc02256fSLawrence Mitchell   Petsc3Int *a = (Petsc3Int *)inout_;
1362fc02256fSLawrence Mitchell   Petsc3Int *b = (Petsc3Int *)in_;
1363fc02256fSLawrence Mitchell   PetscInt i, len = *len_;
1364fc02256fSLawrence Mitchell   for (i = 0; i < len; i++) {
1365fc02256fSLawrence Mitchell     if (a[i].vote < b[i].vote) {
1366fc02256fSLawrence Mitchell       a[i].vote = b[i].vote;
1367fc02256fSLawrence Mitchell       a[i].rank = b[i].rank;
1368fc02256fSLawrence Mitchell       a[i].index = b[i].index;
1369fc02256fSLawrence Mitchell     } else if (a[i].vote <= b[i].vote) {
1370fc02256fSLawrence Mitchell       if (a[i].rank >= b[i].rank) {
1371fc02256fSLawrence Mitchell         a[i].rank = b[i].rank;
1372fc02256fSLawrence Mitchell         a[i].index = b[i].index;
1373fc02256fSLawrence Mitchell       }
1374fc02256fSLawrence Mitchell     }
1375fc02256fSLawrence Mitchell   }
1376fc02256fSLawrence Mitchell }
1377fc02256fSLawrence Mitchell 
1378f5bf2dbfSMichael Lange /*@C
1379a8c5bd36SStefano Zampini   DMPlexCreatePointSF - Build a point SF from an SF describing a point migration
1380f5bf2dbfSMichael Lange 
1381f5bf2dbfSMichael Lange   Input Parameter:
1382f5bf2dbfSMichael Lange + dm          - The source DMPlex object
1383f5bf2dbfSMichael Lange . migrationSF - The star forest that describes the parallel point remapping
13841627f6ccSMichael Lange . ownership   - Flag causing a vote to determine point ownership
1385f5bf2dbfSMichael Lange 
1386f5bf2dbfSMichael Lange   Output Parameter:
1387f5bf2dbfSMichael Lange - pointSF     - The star forest describing the point overlap in the remapped DM
1388f5bf2dbfSMichael Lange 
1389f5bf2dbfSMichael Lange   Level: developer
1390f5bf2dbfSMichael Lange 
1391f5bf2dbfSMichael Lange .seealso: DMPlexDistribute(), DMPlexDistributeOverlap()
1392f5bf2dbfSMichael Lange @*/
1393f5bf2dbfSMichael Lange PetscErrorCode DMPlexCreatePointSF(DM dm, PetscSF migrationSF, PetscBool ownership, PetscSF *pointSF)
1394f5bf2dbfSMichael Lange {
139523193802SMatthew G. Knepley   PetscMPIInt        rank, size;
13961627f6ccSMichael Lange   PetscInt           p, nroots, nleaves, idx, npointLeaves;
1397f5bf2dbfSMichael Lange   PetscInt          *pointLocal;
1398f5bf2dbfSMichael Lange   const PetscInt    *leaves;
1399f5bf2dbfSMichael Lange   const PetscSFNode *roots;
1400f5bf2dbfSMichael Lange   PetscSFNode       *rootNodes, *leafNodes, *pointRemote;
140123193802SMatthew G. Knepley   Vec                shifts;
1402cae3e4f3SLawrence Mitchell   const PetscInt     numShifts = 13759;
140323193802SMatthew G. Knepley   const PetscScalar *shift = NULL;
140423193802SMatthew G. Knepley   const PetscBool    shiftDebug = PETSC_FALSE;
140598ba2d7fSLawrence Mitchell   PetscBool          balance;
1406f5bf2dbfSMichael Lange   PetscErrorCode     ierr;
1407f5bf2dbfSMichael Lange 
1408f5bf2dbfSMichael Lange   PetscFunctionBegin;
1409f5bf2dbfSMichael Lange   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
1410f5bf2dbfSMichael Lange   ierr = MPI_Comm_rank(PetscObjectComm((PetscObject) dm), &rank);CHKERRQ(ierr);
1411ab0bc224SMatthew G. Knepley   ierr = MPI_Comm_size(PetscObjectComm((PetscObject) dm), &size);CHKERRQ(ierr);
141230b0ce1bSStefano Zampini   ierr = PetscLogEventBegin(DMPLEX_CreatePointSF,dm,0,0,0);CHKERRQ(ierr);
1413f5bf2dbfSMichael Lange 
141498ba2d7fSLawrence Mitchell   ierr = DMPlexGetPartitionBalance(dm, &balance);CHKERRQ(ierr);
1415f5bf2dbfSMichael Lange   ierr = PetscSFGetGraph(migrationSF, &nroots, &nleaves, &leaves, &roots);CHKERRQ(ierr);
1416f5bf2dbfSMichael Lange   ierr = PetscMalloc2(nroots, &rootNodes, nleaves, &leafNodes);CHKERRQ(ierr);
1417f5bf2dbfSMichael Lange   if (ownership) {
1418fc02256fSLawrence Mitchell     MPI_Op       op;
1419fc02256fSLawrence Mitchell     MPI_Datatype datatype;
1420fc02256fSLawrence Mitchell     Petsc3Int   *rootVote = NULL, *leafVote = NULL;
142123193802SMatthew G. Knepley     /* If balancing, we compute a random cyclic shift of the rank for each remote point. That way, the max will evenly distribute among ranks. */
142298ba2d7fSLawrence Mitchell     if (balance) {
142323193802SMatthew G. Knepley       PetscRandom r;
142423193802SMatthew G. Knepley 
142523193802SMatthew G. Knepley       ierr = PetscRandomCreate(PETSC_COMM_SELF, &r);CHKERRQ(ierr);
1426cae3e4f3SLawrence Mitchell       ierr = PetscRandomSetInterval(r, 0, 2467*size);CHKERRQ(ierr);
142723193802SMatthew G. Knepley       ierr = VecCreate(PETSC_COMM_SELF, &shifts);CHKERRQ(ierr);
142823193802SMatthew G. Knepley       ierr = VecSetSizes(shifts, numShifts, numShifts);CHKERRQ(ierr);
142923193802SMatthew G. Knepley       ierr = VecSetType(shifts, VECSTANDARD);CHKERRQ(ierr);
143023193802SMatthew G. Knepley       ierr = VecSetRandom(shifts, r);CHKERRQ(ierr);
143123193802SMatthew G. Knepley       ierr = PetscRandomDestroy(&r);CHKERRQ(ierr);
143223193802SMatthew G. Knepley       ierr = VecGetArrayRead(shifts, &shift);CHKERRQ(ierr);
143323193802SMatthew G. Knepley     }
143423193802SMatthew G. Knepley 
1435fc02256fSLawrence Mitchell     ierr = PetscMalloc1(nroots, &rootVote);CHKERRQ(ierr);
1436fc02256fSLawrence Mitchell     ierr = PetscMalloc1(nleaves, &leafVote);CHKERRQ(ierr);
143723193802SMatthew G. Knepley     /* Point ownership vote: Process with highest rank owns shared points */
1438f5bf2dbfSMichael Lange     for (p = 0; p < nleaves; ++p) {
143923193802SMatthew G. Knepley       if (shiftDebug) {
1440e7bcd635SMatthew G. Knepley         ierr = PetscSynchronizedPrintf(PetscObjectComm((PetscObject) dm), "[%d] Point %D RemotePoint %D Shift %D MyRank %D\n", rank, leaves ? leaves[p] : p, roots[p].index, (PetscInt) PetscRealPart(shift[roots[p].index%numShifts]), (rank + (shift ? (PetscInt) PetscRealPart(shift[roots[p].index%numShifts]) : 0))%size);CHKERRQ(ierr);
144123193802SMatthew G. Knepley       }
1442f5bf2dbfSMichael Lange       /* Either put in a bid or we know we own it */
1443fc02256fSLawrence Mitchell       leafVote[p].vote  = (rank + (shift ? (PetscInt) PetscRealPart(shift[roots[p].index%numShifts]) : 0))%size;
1444fc02256fSLawrence Mitchell       leafVote[p].rank = rank;
1445fc02256fSLawrence Mitchell       leafVote[p].index = p;
1446f5bf2dbfSMichael Lange     }
1447f5bf2dbfSMichael Lange     for (p = 0; p < nroots; p++) {
14481627f6ccSMichael Lange       /* Root must not participate in the reduction, flag so that MAXLOC does not use */
1449fc02256fSLawrence Mitchell       rootVote[p].vote  = -3;
1450fc02256fSLawrence Mitchell       rootVote[p].rank  = -3;
1451fc02256fSLawrence Mitchell       rootVote[p].index = -3;
1452f5bf2dbfSMichael Lange     }
1453fc02256fSLawrence Mitchell     ierr = MPI_Type_contiguous(3, MPIU_INT, &datatype);CHKERRQ(ierr);
1454fc02256fSLawrence Mitchell     ierr = MPI_Type_commit(&datatype);CHKERRQ(ierr);
1455fc02256fSLawrence Mitchell     ierr = MPI_Op_create(&MaxLocCarry, 1, &op);CHKERRQ(ierr);
1456fc02256fSLawrence Mitchell     ierr = PetscSFReduceBegin(migrationSF, datatype, leafVote, rootVote, op);CHKERRQ(ierr);
1457fc02256fSLawrence Mitchell     ierr = PetscSFReduceEnd(migrationSF, datatype, leafVote, rootVote, op);CHKERRQ(ierr);
1458fc02256fSLawrence Mitchell     ierr = MPI_Op_free(&op);CHKERRQ(ierr);
1459fc02256fSLawrence Mitchell     ierr = MPI_Type_free(&datatype);CHKERRQ(ierr);
1460c091126eSLawrence Mitchell     for (p = 0; p < nroots; p++) {
1461fc02256fSLawrence Mitchell       rootNodes[p].rank = rootVote[p].rank;
1462fc02256fSLawrence Mitchell       rootNodes[p].index = rootVote[p].index;
1463c091126eSLawrence Mitchell     }
1464fc02256fSLawrence Mitchell     ierr = PetscFree(leafVote);CHKERRQ(ierr);
1465fc02256fSLawrence Mitchell     ierr = PetscFree(rootVote);CHKERRQ(ierr);
1466f5bf2dbfSMichael Lange   } else {
1467f5bf2dbfSMichael Lange     for (p = 0; p < nroots; p++) {
1468f5bf2dbfSMichael Lange       rootNodes[p].index = -1;
1469f5bf2dbfSMichael Lange       rootNodes[p].rank = rank;
1470fc02256fSLawrence Mitchell     }
1471f5bf2dbfSMichael Lange     for (p = 0; p < nleaves; p++) {
1472f5bf2dbfSMichael Lange       /* Write new local id into old location */
1473f5bf2dbfSMichael Lange       if (roots[p].rank == rank) {
14746462276dSToby Isaac         rootNodes[roots[p].index].index = leaves ? leaves[p] : p;
1475f5bf2dbfSMichael Lange       }
1476f5bf2dbfSMichael Lange     }
1477f5bf2dbfSMichael Lange   }
1478f5bf2dbfSMichael Lange   ierr = PetscSFBcastBegin(migrationSF, MPIU_2INT, rootNodes, leafNodes);CHKERRQ(ierr);
1479f5bf2dbfSMichael Lange   ierr = PetscSFBcastEnd(migrationSF, MPIU_2INT, rootNodes, leafNodes);CHKERRQ(ierr);
1480f5bf2dbfSMichael Lange 
148123193802SMatthew G. Knepley   for (npointLeaves = 0, p = 0; p < nleaves; p++) {
1482b0e1264bSMatthew G. Knepley     if (leafNodes[p].rank != rank) npointLeaves++;
148323193802SMatthew G. Knepley   }
14841627f6ccSMichael Lange   ierr = PetscMalloc1(npointLeaves, &pointLocal);CHKERRQ(ierr);
14851627f6ccSMichael Lange   ierr = PetscMalloc1(npointLeaves, &pointRemote);CHKERRQ(ierr);
1486f5bf2dbfSMichael Lange   for (idx = 0, p = 0; p < nleaves; p++) {
1487b0e1264bSMatthew G. Knepley     if (leafNodes[p].rank != rank) {
1488f5bf2dbfSMichael Lange       pointLocal[idx] = p;
1489f5bf2dbfSMichael Lange       pointRemote[idx] = leafNodes[p];
1490f5bf2dbfSMichael Lange       idx++;
1491f5bf2dbfSMichael Lange     }
1492f5bf2dbfSMichael Lange   }
149323193802SMatthew G. Knepley   if (shift) {
149423193802SMatthew G. Knepley     ierr = VecRestoreArrayRead(shifts, &shift);CHKERRQ(ierr);
149523193802SMatthew G. Knepley     ierr = VecDestroy(&shifts);CHKERRQ(ierr);
149623193802SMatthew G. Knepley   }
149723193802SMatthew G. Knepley   if (shiftDebug) {ierr = PetscSynchronizedFlush(PetscObjectComm((PetscObject) dm), PETSC_STDOUT);CHKERRQ(ierr);}
1498f5bf2dbfSMichael Lange   ierr = PetscSFCreate(PetscObjectComm((PetscObject) dm), pointSF);CHKERRQ(ierr);
14991627f6ccSMichael Lange   ierr = PetscSFSetFromOptions(*pointSF);CHKERRQ(ierr);
1500f5bf2dbfSMichael Lange   ierr = PetscSFSetGraph(*pointSF, nleaves, npointLeaves, pointLocal, PETSC_OWN_POINTER, pointRemote, PETSC_OWN_POINTER);CHKERRQ(ierr);
1501f5bf2dbfSMichael Lange   ierr = PetscFree2(rootNodes, leafNodes);CHKERRQ(ierr);
150230b0ce1bSStefano Zampini   ierr = PetscLogEventEnd(DMPLEX_CreatePointSF,dm,0,0,0);CHKERRQ(ierr);
1503f5bf2dbfSMichael Lange   PetscFunctionReturn(0);
1504f5bf2dbfSMichael Lange }
1505f5bf2dbfSMichael Lange 
150615078cd4SMichael Lange /*@C
150715078cd4SMichael Lange   DMPlexMigrate  - Migrates internal DM data over the supplied star forest
150815078cd4SMichael Lange 
1509d083f849SBarry Smith   Collective on dm
151083655b49SVáclav Hapla 
151115078cd4SMichael Lange   Input Parameter:
151215078cd4SMichael Lange + dm       - The source DMPlex object
15131627f6ccSMichael Lange . sf       - The star forest communication context describing the migration pattern
151415078cd4SMichael Lange 
151515078cd4SMichael Lange   Output Parameter:
151615078cd4SMichael Lange - targetDM - The target DMPlex object
151715078cd4SMichael Lange 
1518b9f40539SMichael Lange   Level: intermediate
151915078cd4SMichael Lange 
152015078cd4SMichael Lange .seealso: DMPlexDistribute(), DMPlexDistributeOverlap()
152115078cd4SMichael Lange @*/
1522b9f40539SMichael Lange PetscErrorCode DMPlexMigrate(DM dm, PetscSF sf, DM targetDM)
152315078cd4SMichael Lange {
1524b9f40539SMichael Lange   MPI_Comm               comm;
1525cc1750acSStefano Zampini   PetscInt               dim, cdim, nroots;
1526b9f40539SMichael Lange   PetscSF                sfPoint;
152715078cd4SMichael Lange   ISLocalToGlobalMapping ltogMigration;
1528ac04eaf7SToby Isaac   ISLocalToGlobalMapping ltogOriginal = NULL;
1529b9f40539SMichael Lange   PetscBool              flg;
153015078cd4SMichael Lange   PetscErrorCode         ierr;
153115078cd4SMichael Lange 
153215078cd4SMichael Lange   PetscFunctionBegin;
153315078cd4SMichael Lange   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
15341b858b30SMichael Lange   ierr = PetscLogEventBegin(DMPLEX_Migrate, dm, 0, 0, 0);CHKERRQ(ierr);
1535b9f40539SMichael Lange   ierr = PetscObjectGetComm((PetscObject) dm, &comm);CHKERRQ(ierr);
153615078cd4SMichael Lange   ierr = DMGetDimension(dm, &dim);CHKERRQ(ierr);
153715078cd4SMichael Lange   ierr = DMSetDimension(targetDM, dim);CHKERRQ(ierr);
1538cc1750acSStefano Zampini   ierr = DMGetCoordinateDim(dm, &cdim);CHKERRQ(ierr);
1539cc1750acSStefano Zampini   ierr = DMSetCoordinateDim(targetDM, cdim);CHKERRQ(ierr);
154015078cd4SMichael Lange 
1541bfb0467fSMichael Lange   /* Check for a one-to-all distribution pattern */
1542b9f40539SMichael Lange   ierr = DMGetPointSF(dm, &sfPoint);CHKERRQ(ierr);
1543b9f40539SMichael Lange   ierr = PetscSFGetGraph(sfPoint, &nroots, NULL, NULL, NULL);CHKERRQ(ierr);
1544bfb0467fSMichael Lange   if (nroots >= 0) {
1545b9f40539SMichael Lange     IS        isOriginal;
1546ac04eaf7SToby Isaac     PetscInt  n, size, nleaves;
1547ac04eaf7SToby Isaac     PetscInt  *numbering_orig, *numbering_new;
1548367003a6SStefano Zampini 
1549b9f40539SMichael Lange     /* Get the original point numbering */
1550b9f40539SMichael Lange     ierr = DMPlexCreatePointNumbering(dm, &isOriginal);CHKERRQ(ierr);
1551b9f40539SMichael Lange     ierr = ISLocalToGlobalMappingCreateIS(isOriginal, &ltogOriginal);CHKERRQ(ierr);
1552b9f40539SMichael Lange     ierr = ISLocalToGlobalMappingGetSize(ltogOriginal, &size);CHKERRQ(ierr);
1553b9f40539SMichael Lange     ierr = ISLocalToGlobalMappingGetBlockIndices(ltogOriginal, (const PetscInt**)&numbering_orig);CHKERRQ(ierr);
1554b9f40539SMichael Lange     /* Convert to positive global numbers */
1555b9f40539SMichael Lange     for (n=0; n<size; n++) {if (numbering_orig[n] < 0) numbering_orig[n] = -(numbering_orig[n]+1);}
1556b9f40539SMichael Lange     /* Derive the new local-to-global mapping from the old one */
1557b9f40539SMichael Lange     ierr = PetscSFGetGraph(sf, NULL, &nleaves, NULL, NULL);CHKERRQ(ierr);
1558b9f40539SMichael Lange     ierr = PetscMalloc1(nleaves, &numbering_new);CHKERRQ(ierr);
15596e0288c8SStefano Zampini     ierr = PetscSFBcastBegin(sf, MPIU_INT, numbering_orig, numbering_new);CHKERRQ(ierr);
15606e0288c8SStefano Zampini     ierr = PetscSFBcastEnd(sf, MPIU_INT, numbering_orig, numbering_new);CHKERRQ(ierr);
15616e0288c8SStefano Zampini     ierr = ISLocalToGlobalMappingCreate(comm, 1, nleaves, numbering_new, PETSC_OWN_POINTER, &ltogMigration);CHKERRQ(ierr);
1562b9f40539SMichael Lange     ierr = ISLocalToGlobalMappingRestoreIndices(ltogOriginal, (const PetscInt**)&numbering_orig);CHKERRQ(ierr);
1563b9f40539SMichael Lange     ierr = ISDestroy(&isOriginal);CHKERRQ(ierr);
156415078cd4SMichael Lange   } else {
1565bfb0467fSMichael Lange     /* One-to-all distribution pattern: We can derive LToG from SF */
156615078cd4SMichael Lange     ierr = ISLocalToGlobalMappingCreateSF(sf, 0, &ltogMigration);CHKERRQ(ierr);
156715078cd4SMichael Lange   }
1568c5929fdfSBarry Smith   ierr = PetscOptionsHasName(((PetscObject) dm)->options,((PetscObject) dm)->prefix, "-partition_view", &flg);CHKERRQ(ierr);
1569b9f40539SMichael Lange   if (flg) {
1570b9f40539SMichael Lange     ierr = PetscPrintf(comm, "Point renumbering for DM migration:\n");CHKERRQ(ierr);
1571b9f40539SMichael Lange     ierr = ISLocalToGlobalMappingView(ltogMigration, NULL);CHKERRQ(ierr);
1572b9f40539SMichael Lange   }
157315078cd4SMichael Lange   /* Migrate DM data to target DM */
1574ac04eaf7SToby Isaac   ierr = DMPlexDistributeCones(dm, sf, ltogOriginal, ltogMigration, targetDM);CHKERRQ(ierr);
157515078cd4SMichael Lange   ierr = DMPlexDistributeLabels(dm, sf, targetDM);CHKERRQ(ierr);
15760dc1530dSSander Arens   ierr = DMPlexDistributeCoordinates(dm, sf, targetDM);CHKERRQ(ierr);
157715078cd4SMichael Lange   ierr = DMPlexDistributeSetupHybrid(dm, sf, ltogMigration, targetDM);CHKERRQ(ierr);
157808633170SToby Isaac   ierr = DMPlexDistributeSetupTree(dm, sf, ltogOriginal, ltogMigration, targetDM);CHKERRQ(ierr);
1579ac04eaf7SToby Isaac   ierr = ISLocalToGlobalMappingDestroy(&ltogOriginal);CHKERRQ(ierr);
1580302440fdSBarry Smith   ierr = ISLocalToGlobalMappingDestroy(&ltogMigration);CHKERRQ(ierr);
15811b858b30SMichael Lange   ierr = PetscLogEventEnd(DMPLEX_Migrate, dm, 0, 0, 0);CHKERRQ(ierr);
158215078cd4SMichael Lange   PetscFunctionReturn(0);
158315078cd4SMichael Lange }
158415078cd4SMichael Lange 
15853b8f15a2SMatthew G. Knepley /*@C
158670034214SMatthew G. Knepley   DMPlexDistribute - Distributes the mesh and any associated sections.
158770034214SMatthew G. Knepley 
1588d083f849SBarry Smith   Collective on dm
158970034214SMatthew G. Knepley 
159070034214SMatthew G. Knepley   Input Parameter:
159170034214SMatthew G. Knepley + dm  - The original DMPlex object
159270034214SMatthew G. Knepley - overlap - The overlap of partitions, 0 is the default
159370034214SMatthew G. Knepley 
159470034214SMatthew G. Knepley   Output Parameter:
1595f4ae5380SJed Brown + sf - The PetscSF used for point distribution, or NULL if not needed
1596f4ae5380SJed Brown - dmParallel - The distributed DMPlex object
159770034214SMatthew G. Knepley 
1598f4ae5380SJed Brown   Note: If the mesh was not distributed, the output dmParallel will be NULL.
159970034214SMatthew G. Knepley 
1600b0441da4SMatthew G. Knepley   The user can control the definition of adjacency for the mesh using DMSetAdjacency(). They should choose the combination appropriate for the function
160170034214SMatthew G. Knepley   representation on the mesh.
160270034214SMatthew G. Knepley 
160370034214SMatthew G. Knepley   Level: intermediate
160470034214SMatthew G. Knepley 
1605cb54e036SVaclav Hapla .seealso: DMPlexCreate(), DMSetAdjacency(), DMPlexGetOverlap()
160670034214SMatthew G. Knepley @*/
160780cf41d5SMatthew G. Knepley PetscErrorCode DMPlexDistribute(DM dm, PetscInt overlap, PetscSF *sf, DM *dmParallel)
160870034214SMatthew G. Knepley {
160970034214SMatthew G. Knepley   MPI_Comm               comm;
161015078cd4SMichael Lange   PetscPartitioner       partitioner;
1611f8987ae8SMichael Lange   IS                     cellPart;
1612f8987ae8SMichael Lange   PetscSection           cellPartSection;
1613cf86098cSMatthew G. Knepley   DM                     dmCoord;
1614f8987ae8SMichael Lange   DMLabel                lblPartition, lblMigration;
1615874ddda9SLisandro Dalcin   PetscSF                sfMigration, sfStratified, sfPoint;
161698ba2d7fSLawrence Mitchell   PetscBool              flg, balance;
1617874ddda9SLisandro Dalcin   PetscMPIInt            rank, size;
161870034214SMatthew G. Knepley   PetscErrorCode         ierr;
161970034214SMatthew G. Knepley 
162070034214SMatthew G. Knepley   PetscFunctionBegin;
162170034214SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
1622d5c515a1SMatthew G. Knepley   PetscValidLogicalCollectiveInt(dm, overlap, 2);
1623d5c515a1SMatthew G. Knepley   if (sf) PetscValidPointer(sf,3);
1624d5c515a1SMatthew G. Knepley   PetscValidPointer(dmParallel,4);
162570034214SMatthew G. Knepley 
16260c86c063SLisandro Dalcin   if (sf) *sf = NULL;
16270c86c063SLisandro Dalcin   *dmParallel = NULL;
162870034214SMatthew G. Knepley   ierr = PetscObjectGetComm((PetscObject)dm,&comm);CHKERRQ(ierr);
162970034214SMatthew G. Knepley   ierr = MPI_Comm_rank(comm, &rank);CHKERRQ(ierr);
16309852e123SBarry Smith   ierr = MPI_Comm_size(comm, &size);CHKERRQ(ierr);
16310c86c063SLisandro Dalcin   if (size == 1) PetscFunctionReturn(0);
163270034214SMatthew G. Knepley 
16330c86c063SLisandro Dalcin   ierr = PetscLogEventBegin(DMPLEX_Distribute,dm,0,0,0);CHKERRQ(ierr);
163415078cd4SMichael Lange   /* Create cell partition */
163567eb269bSLisandro Dalcin   ierr = PetscLogEventBegin(DMPLEX_Partition,dm,0,0,0);CHKERRQ(ierr);
163677623264SMatthew G. Knepley   ierr = PetscSectionCreate(comm, &cellPartSection);CHKERRQ(ierr);
163715078cd4SMichael Lange   ierr = DMPlexGetPartitioner(dm, &partitioner);CHKERRQ(ierr);
163815078cd4SMichael Lange   ierr = PetscPartitionerPartition(partitioner, dm, cellPartSection, &cellPart);CHKERRQ(ierr);
163930b0ce1bSStefano Zampini   ierr = PetscLogEventBegin(DMPLEX_PartSelf,dm,0,0,0);CHKERRQ(ierr);
1640f8987ae8SMichael Lange   {
1641f8987ae8SMichael Lange     /* Convert partition to DMLabel */
1642825f8a23SLisandro Dalcin     IS             is;
1643825f8a23SLisandro Dalcin     PetscHSetI     ht;
1644f8987ae8SMichael Lange     const PetscInt *points;
16458e330a33SStefano Zampini     PetscInt       *iranks;
16468e330a33SStefano Zampini     PetscInt       pStart, pEnd, proc, npoints, poff = 0, nranks;
1647825f8a23SLisandro Dalcin 
1648d67d17b1SMatthew G. Knepley     ierr = DMLabelCreate(PETSC_COMM_SELF, "Point Partition", &lblPartition);CHKERRQ(ierr);
1649825f8a23SLisandro Dalcin     /* Preallocate strata */
1650825f8a23SLisandro Dalcin     ierr = PetscHSetICreate(&ht);CHKERRQ(ierr);
1651825f8a23SLisandro Dalcin     ierr = PetscSectionGetChart(cellPartSection, &pStart, &pEnd);CHKERRQ(ierr);
1652825f8a23SLisandro Dalcin     for (proc = pStart; proc < pEnd; proc++) {
1653825f8a23SLisandro Dalcin       ierr = PetscSectionGetDof(cellPartSection, proc, &npoints);CHKERRQ(ierr);
1654825f8a23SLisandro Dalcin       if (npoints) {ierr = PetscHSetIAdd(ht, proc);CHKERRQ(ierr);}
1655825f8a23SLisandro Dalcin     }
1656825f8a23SLisandro Dalcin     ierr = PetscHSetIGetSize(ht, &nranks);CHKERRQ(ierr);
1657825f8a23SLisandro Dalcin     ierr = PetscMalloc1(nranks, &iranks);CHKERRQ(ierr);
1658825f8a23SLisandro Dalcin     ierr = PetscHSetIGetElems(ht, &poff, iranks);CHKERRQ(ierr);
1659825f8a23SLisandro Dalcin     ierr = PetscHSetIDestroy(&ht);CHKERRQ(ierr);
1660825f8a23SLisandro Dalcin     ierr = DMLabelAddStrata(lblPartition, nranks, iranks);CHKERRQ(ierr);
1661825f8a23SLisandro Dalcin     ierr = PetscFree(iranks);CHKERRQ(ierr);
1662825f8a23SLisandro Dalcin     /* Inline DMPlexPartitionLabelClosure() */
1663f8987ae8SMichael Lange     ierr = ISGetIndices(cellPart, &points);CHKERRQ(ierr);
1664f8987ae8SMichael Lange     ierr = PetscSectionGetChart(cellPartSection, &pStart, &pEnd);CHKERRQ(ierr);
1665f8987ae8SMichael Lange     for (proc = pStart; proc < pEnd; proc++) {
1666f8987ae8SMichael Lange       ierr = PetscSectionGetDof(cellPartSection, proc, &npoints);CHKERRQ(ierr);
1667825f8a23SLisandro Dalcin       if (!npoints) continue;
1668825f8a23SLisandro Dalcin       ierr = PetscSectionGetOffset(cellPartSection, proc, &poff);CHKERRQ(ierr);
16698e330a33SStefano Zampini       ierr = DMPlexClosurePoints_Private(dm, npoints, points+poff, &is);CHKERRQ(ierr);
1670825f8a23SLisandro Dalcin       ierr = DMLabelSetStratumIS(lblPartition, proc, is);CHKERRQ(ierr);
1671825f8a23SLisandro Dalcin       ierr = ISDestroy(&is);CHKERRQ(ierr);
1672f8987ae8SMichael Lange     }
1673f8987ae8SMichael Lange     ierr = ISRestoreIndices(cellPart, &points);CHKERRQ(ierr);
1674f8987ae8SMichael Lange   }
167530b0ce1bSStefano Zampini   ierr = PetscLogEventEnd(DMPLEX_PartSelf,dm,0,0,0);CHKERRQ(ierr);
16766e203dd9SStefano Zampini 
1677d67d17b1SMatthew G. Knepley   ierr = DMLabelCreate(PETSC_COMM_SELF, "Point migration", &lblMigration);CHKERRQ(ierr);
1678874ddda9SLisandro Dalcin   ierr = DMPlexPartitionLabelInvert(dm, lblPartition, NULL, lblMigration);CHKERRQ(ierr);
1679302440fdSBarry Smith   ierr = DMPlexPartitionLabelCreateSF(dm, lblMigration, &sfMigration);CHKERRQ(ierr);
168043f7d02bSMichael Lange   ierr = DMPlexStratifyMigrationSF(dm, sfMigration, &sfStratified);CHKERRQ(ierr);
168143f7d02bSMichael Lange   ierr = PetscSFDestroy(&sfMigration);CHKERRQ(ierr);
168243f7d02bSMichael Lange   sfMigration = sfStratified;
168330b0ce1bSStefano Zampini   ierr = PetscSFSetUp(sfMigration);CHKERRQ(ierr);
168467eb269bSLisandro Dalcin   ierr = PetscLogEventEnd(DMPLEX_Partition,dm,0,0,0);CHKERRQ(ierr);
1685c5929fdfSBarry Smith   ierr = PetscOptionsHasName(((PetscObject) dm)->options,((PetscObject) dm)->prefix, "-partition_view", &flg);CHKERRQ(ierr);
168670034214SMatthew G. Knepley   if (flg) {
1687a8c5bd36SStefano Zampini     ierr = DMLabelView(lblPartition, PETSC_VIEWER_STDOUT_(comm));CHKERRQ(ierr);
1688a8c5bd36SStefano Zampini     ierr = PetscSFView(sfMigration, PETSC_VIEWER_STDOUT_(comm));CHKERRQ(ierr);
168970034214SMatthew G. Knepley   }
1690f8987ae8SMichael Lange 
169115078cd4SMichael Lange   /* Create non-overlapping parallel DM and migrate internal data */
169270034214SMatthew G. Knepley   ierr = DMPlexCreate(comm, dmParallel);CHKERRQ(ierr);
169370034214SMatthew G. Knepley   ierr = PetscObjectSetName((PetscObject) *dmParallel, "Parallel Mesh");CHKERRQ(ierr);
1694b9f40539SMichael Lange   ierr = DMPlexMigrate(dm, sfMigration, *dmParallel);CHKERRQ(ierr);
169570034214SMatthew G. Knepley 
1696a157612eSMichael Lange   /* Build the point SF without overlap */
169798ba2d7fSLawrence Mitchell   ierr = DMPlexGetPartitionBalance(dm, &balance);CHKERRQ(ierr);
169898ba2d7fSLawrence Mitchell   ierr = DMPlexSetPartitionBalance(*dmParallel, balance);CHKERRQ(ierr);
16991627f6ccSMichael Lange   ierr = DMPlexCreatePointSF(*dmParallel, sfMigration, PETSC_TRUE, &sfPoint);CHKERRQ(ierr);
1700f5bf2dbfSMichael Lange   ierr = DMSetPointSF(*dmParallel, sfPoint);CHKERRQ(ierr);
1701cf86098cSMatthew G. Knepley   ierr = DMGetCoordinateDM(*dmParallel, &dmCoord);CHKERRQ(ierr);
1702cf86098cSMatthew G. Knepley   if (dmCoord) {ierr = DMSetPointSF(dmCoord, sfPoint);CHKERRQ(ierr);}
1703a8c5bd36SStefano Zampini   if (flg) {ierr = PetscSFView(sfPoint, NULL);CHKERRQ(ierr);}
170470034214SMatthew G. Knepley 
1705a157612eSMichael Lange   if (overlap > 0) {
170615078cd4SMichael Lange     DM                 dmOverlap;
170757f290daSMatthew G. Knepley     PetscInt           nroots, nleaves, noldleaves, l;
170857f290daSMatthew G. Knepley     const PetscInt    *oldLeaves;
170957f290daSMatthew G. Knepley     PetscSFNode       *newRemote, *permRemote;
171015078cd4SMichael Lange     const PetscSFNode *oldRemote;
171115078cd4SMichael Lange     PetscSF            sfOverlap, sfOverlapPoint;
1712524e35f8SStefano Zampini 
1713a157612eSMichael Lange     /* Add the partition overlap to the distributed DM */
1714b9f40539SMichael Lange     ierr = DMPlexDistributeOverlap(*dmParallel, overlap, &sfOverlap, &dmOverlap);CHKERRQ(ierr);
1715a157612eSMichael Lange     ierr = DMDestroy(dmParallel);CHKERRQ(ierr);
1716a157612eSMichael Lange     *dmParallel = dmOverlap;
1717c389ea9fSToby Isaac     if (flg) {
17183d822a50SMichael Lange       ierr = PetscPrintf(comm, "Overlap Migration SF:\n");CHKERRQ(ierr);
171915078cd4SMichael Lange       ierr = PetscSFView(sfOverlap, NULL);CHKERRQ(ierr);
1720c389ea9fSToby Isaac     }
172143331d4aSMichael Lange 
1722f8987ae8SMichael Lange     /* Re-map the migration SF to establish the full migration pattern */
172357f290daSMatthew G. Knepley     ierr = PetscSFGetGraph(sfMigration, &nroots, &noldleaves, &oldLeaves, &oldRemote);CHKERRQ(ierr);
172415078cd4SMichael Lange     ierr = PetscSFGetGraph(sfOverlap, NULL, &nleaves, NULL, NULL);CHKERRQ(ierr);
172543331d4aSMichael Lange     ierr = PetscMalloc1(nleaves, &newRemote);CHKERRQ(ierr);
172657f290daSMatthew G. Knepley     /* oldRemote: original root point mapping to original leaf point
172757f290daSMatthew G. Knepley        newRemote: original leaf point mapping to overlapped leaf point */
172857f290daSMatthew G. Knepley     if (oldLeaves) {
172973e69a6aSMatthew G. Knepley       /* After stratification, the migration remotes may not be in root (canonical) order, so we reorder using the leaf numbering */
173073e69a6aSMatthew G. Knepley       ierr = PetscMalloc1(noldleaves, &permRemote);CHKERRQ(ierr);
173157f290daSMatthew G. Knepley       for (l = 0; l < noldleaves; ++l) permRemote[oldLeaves[l]] = oldRemote[l];
173257f290daSMatthew G. Knepley       oldRemote = permRemote;
173357f290daSMatthew G. Knepley     }
173415078cd4SMichael Lange     ierr = PetscSFBcastBegin(sfOverlap, MPIU_2INT, oldRemote, newRemote);CHKERRQ(ierr);
173515078cd4SMichael Lange     ierr = PetscSFBcastEnd(sfOverlap, MPIU_2INT, oldRemote, newRemote);CHKERRQ(ierr);
173657f290daSMatthew G. Knepley     if (oldLeaves) {ierr = PetscFree(oldRemote);CHKERRQ(ierr);}
173715078cd4SMichael Lange     ierr = PetscSFCreate(comm, &sfOverlapPoint);CHKERRQ(ierr);
173815078cd4SMichael Lange     ierr = PetscSFSetGraph(sfOverlapPoint, nroots, nleaves, NULL, PETSC_OWN_POINTER, newRemote, PETSC_OWN_POINTER);CHKERRQ(ierr);
173915078cd4SMichael Lange     ierr = PetscSFDestroy(&sfOverlap);CHKERRQ(ierr);
1740f8987ae8SMichael Lange     ierr = PetscSFDestroy(&sfMigration);CHKERRQ(ierr);
174115078cd4SMichael Lange     sfMigration = sfOverlapPoint;
1742c389ea9fSToby Isaac   }
1743bf5244c7SMatthew G. Knepley   /* Cleanup Partition */
1744f8987ae8SMichael Lange   ierr = DMLabelDestroy(&lblPartition);CHKERRQ(ierr);
1745f8987ae8SMichael Lange   ierr = DMLabelDestroy(&lblMigration);CHKERRQ(ierr);
17464eca1733SMichael Lange   ierr = PetscSectionDestroy(&cellPartSection);CHKERRQ(ierr);
17474eca1733SMichael Lange   ierr = ISDestroy(&cellPart);CHKERRQ(ierr);
1748721cbd76SMatthew G. Knepley   /* Copy BC */
1749a6ba4734SToby Isaac   ierr = DMCopyBoundary(dm, *dmParallel);CHKERRQ(ierr);
175066fe0bfeSMatthew G. Knepley   /* Create sfNatural */
175166fe0bfeSMatthew G. Knepley   if (dm->useNatural) {
175266fe0bfeSMatthew G. Knepley     PetscSection section;
175366fe0bfeSMatthew G. Knepley 
175492fd8e1eSJed Brown     ierr = DMGetLocalSection(dm, &section);CHKERRQ(ierr);
17550c1f158bSMatthew G. Knepley     ierr = DMPlexCreateGlobalToNaturalSF(*dmParallel, section, sfMigration, &(*dmParallel)->sfNatural);CHKERRQ(ierr);
17560e663481SBlaise Bourdin     ierr = DMSetUseNatural(*dmParallel, PETSC_TRUE);CHKERRQ(ierr);
175766fe0bfeSMatthew G. Knepley   }
1758721cbd76SMatthew G. Knepley   /* Cleanup */
1759f8987ae8SMichael Lange   if (sf) {*sf = sfMigration;}
1760f8987ae8SMichael Lange   else    {ierr = PetscSFDestroy(&sfMigration);CHKERRQ(ierr);}
1761f5bf2dbfSMichael Lange   ierr = PetscSFDestroy(&sfPoint);CHKERRQ(ierr);
176270034214SMatthew G. Knepley   ierr = PetscLogEventEnd(DMPLEX_Distribute,dm,0,0,0);CHKERRQ(ierr);
176370034214SMatthew G. Knepley   PetscFunctionReturn(0);
176470034214SMatthew G. Knepley }
1765a157612eSMichael Lange 
1766a157612eSMichael Lange /*@C
176724cc2ca5SMatthew G. Knepley   DMPlexDistributeOverlap - Add partition overlap to a distributed non-overlapping DM.
1768a157612eSMichael Lange 
1769d083f849SBarry Smith   Collective on dm
1770a157612eSMichael Lange 
1771a157612eSMichael Lange   Input Parameter:
1772a157612eSMichael Lange + dm  - The non-overlapping distrbuted DMPlex object
177357fe9a49SVaclav Hapla - overlap - The overlap of partitions (the same on all ranks)
1774a157612eSMichael Lange 
1775a157612eSMichael Lange   Output Parameter:
1776a157612eSMichael Lange + sf - The PetscSF used for point distribution
1777a157612eSMichael Lange - dmOverlap - The overlapping distributed DMPlex object, or NULL
1778a157612eSMichael Lange 
1779dccdeccaSVaclav Hapla   Notes:
1780dccdeccaSVaclav Hapla   If the mesh was not distributed, the return value is NULL.
1781a157612eSMichael Lange 
1782b0441da4SMatthew G. Knepley   The user can control the definition of adjacency for the mesh using DMSetAdjacency(). They should choose the combination appropriate for the function
1783a157612eSMichael Lange   representation on the mesh.
1784a157612eSMichael Lange 
1785dccdeccaSVaclav Hapla   Level: advanced
1786a157612eSMichael Lange 
1787cb54e036SVaclav Hapla .seealso: DMPlexCreate(), DMSetAdjacency(), DMPlexDistribute(), DMPlexCreateOverlapLabel(), DMPlexGetOverlap()
1788a157612eSMichael Lange @*/
1789b9f40539SMichael Lange PetscErrorCode DMPlexDistributeOverlap(DM dm, PetscInt overlap, PetscSF *sf, DM *dmOverlap)
1790a157612eSMichael Lange {
1791a157612eSMichael Lange   MPI_Comm               comm;
17923567eaeeSMatthew G. Knepley   PetscMPIInt            size, rank;
1793a157612eSMichael Lange   PetscSection           rootSection, leafSection;
1794a157612eSMichael Lange   IS                     rootrank, leafrank;
1795cf86098cSMatthew G. Knepley   DM                     dmCoord;
1796a9f1d5b2SMichael Lange   DMLabel                lblOverlap;
1797f5bf2dbfSMichael Lange   PetscSF                sfOverlap, sfStratified, sfPoint;
1798a157612eSMichael Lange   PetscErrorCode         ierr;
1799a157612eSMichael Lange 
1800a157612eSMichael Lange   PetscFunctionBegin;
1801a157612eSMichael Lange   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
180257fe9a49SVaclav Hapla   PetscValidLogicalCollectiveInt(dm, overlap, 2);
1803a157612eSMichael Lange   if (sf) PetscValidPointer(sf, 3);
1804a157612eSMichael Lange   PetscValidPointer(dmOverlap, 4);
1805a157612eSMichael Lange 
18060c86c063SLisandro Dalcin   if (sf) *sf = NULL;
18070c86c063SLisandro Dalcin   *dmOverlap  = NULL;
1808a157612eSMichael Lange   ierr = PetscObjectGetComm((PetscObject)dm,&comm);CHKERRQ(ierr);
18093567eaeeSMatthew G. Knepley   ierr = MPI_Comm_size(comm, &size);CHKERRQ(ierr);
1810a157612eSMichael Lange   ierr = MPI_Comm_rank(comm, &rank);CHKERRQ(ierr);
18110c86c063SLisandro Dalcin   if (size == 1) PetscFunctionReturn(0);
1812a157612eSMichael Lange 
18130c86c063SLisandro Dalcin   ierr = PetscLogEventBegin(DMPLEX_DistributeOverlap, dm, 0, 0, 0);CHKERRQ(ierr);
1814a157612eSMichael Lange   /* Compute point overlap with neighbouring processes on the distributed DM */
181567eb269bSLisandro Dalcin   ierr = PetscLogEventBegin(DMPLEX_Partition,dm,0,0,0);CHKERRQ(ierr);
1816a157612eSMichael Lange   ierr = PetscSectionCreate(comm, &rootSection);CHKERRQ(ierr);
1817a157612eSMichael Lange   ierr = PetscSectionCreate(comm, &leafSection);CHKERRQ(ierr);
1818a157612eSMichael Lange   ierr = DMPlexDistributeOwnership(dm, rootSection, &rootrank, leafSection, &leafrank);CHKERRQ(ierr);
1819dccdeccaSVaclav Hapla   ierr = DMPlexCreateOverlapLabel(dm, overlap, rootSection, rootrank, leafSection, leafrank, &lblOverlap);CHKERRQ(ierr);
1820a9f1d5b2SMichael Lange   /* Convert overlap label to stratified migration SF */
1821a9f1d5b2SMichael Lange   ierr = DMPlexPartitionLabelCreateSF(dm, lblOverlap, &sfOverlap);CHKERRQ(ierr);
1822a9f1d5b2SMichael Lange   ierr = DMPlexStratifyMigrationSF(dm, sfOverlap, &sfStratified);CHKERRQ(ierr);
1823a9f1d5b2SMichael Lange   ierr = PetscSFDestroy(&sfOverlap);CHKERRQ(ierr);
1824a9f1d5b2SMichael Lange   sfOverlap = sfStratified;
1825a9f1d5b2SMichael Lange   ierr = PetscObjectSetName((PetscObject) sfOverlap, "Overlap SF");CHKERRQ(ierr);
1826a9f1d5b2SMichael Lange   ierr = PetscSFSetFromOptions(sfOverlap);CHKERRQ(ierr);
1827a9f1d5b2SMichael Lange 
182815fff7beSMatthew G. Knepley   ierr = PetscSectionDestroy(&rootSection);CHKERRQ(ierr);
182915fff7beSMatthew G. Knepley   ierr = PetscSectionDestroy(&leafSection);CHKERRQ(ierr);
183015fff7beSMatthew G. Knepley   ierr = ISDestroy(&rootrank);CHKERRQ(ierr);
183115fff7beSMatthew G. Knepley   ierr = ISDestroy(&leafrank);CHKERRQ(ierr);
183267eb269bSLisandro Dalcin   ierr = PetscLogEventEnd(DMPLEX_Partition,dm,0,0,0);CHKERRQ(ierr);
1833a157612eSMichael Lange 
1834a157612eSMichael Lange   /* Build the overlapping DM */
1835a157612eSMichael Lange   ierr = DMPlexCreate(comm, dmOverlap);CHKERRQ(ierr);
1836a157612eSMichael Lange   ierr = PetscObjectSetName((PetscObject) *dmOverlap, "Parallel Mesh");CHKERRQ(ierr);
1837a9f1d5b2SMichael Lange   ierr = DMPlexMigrate(dm, sfOverlap, *dmOverlap);CHKERRQ(ierr);
1838cb54e036SVaclav Hapla   /* Store the overlap in the new DM */
1839cb54e036SVaclav Hapla   ((DM_Plex*)(*dmOverlap)->data)->overlap = overlap + ((DM_Plex*)dm->data)->overlap;
1840f5bf2dbfSMichael Lange   /* Build the new point SF */
18411627f6ccSMichael Lange   ierr = DMPlexCreatePointSF(*dmOverlap, sfOverlap, PETSC_FALSE, &sfPoint);CHKERRQ(ierr);
1842f5bf2dbfSMichael Lange   ierr = DMSetPointSF(*dmOverlap, sfPoint);CHKERRQ(ierr);
1843cf86098cSMatthew G. Knepley   ierr = DMGetCoordinateDM(*dmOverlap, &dmCoord);CHKERRQ(ierr);
1844cf86098cSMatthew G. Knepley   if (dmCoord) {ierr = DMSetPointSF(dmCoord, sfPoint);CHKERRQ(ierr);}
1845f5bf2dbfSMichael Lange   ierr = PetscSFDestroy(&sfPoint);CHKERRQ(ierr);
1846a157612eSMichael Lange   /* Cleanup overlap partition */
1847a9f1d5b2SMichael Lange   ierr = DMLabelDestroy(&lblOverlap);CHKERRQ(ierr);
1848a9f1d5b2SMichael Lange   if (sf) *sf = sfOverlap;
1849a9f1d5b2SMichael Lange   else    {ierr = PetscSFDestroy(&sfOverlap);CHKERRQ(ierr);}
18501b858b30SMichael Lange   ierr = PetscLogEventEnd(DMPLEX_DistributeOverlap, dm, 0, 0, 0);CHKERRQ(ierr);
1851a157612eSMichael Lange   PetscFunctionReturn(0);
1852a157612eSMichael Lange }
18536462276dSToby Isaac 
1854cb54e036SVaclav Hapla PetscErrorCode DMPlexGetOverlap_Plex(DM dm, PetscInt *overlap)
1855cb54e036SVaclav Hapla {
1856cb54e036SVaclav Hapla   DM_Plex        *mesh  = (DM_Plex*) dm->data;
1857cb54e036SVaclav Hapla 
1858cb54e036SVaclav Hapla   PetscFunctionBegin;
1859cb54e036SVaclav Hapla   *overlap = mesh->overlap;
1860cb54e036SVaclav Hapla   PetscFunctionReturn(0);
1861cb54e036SVaclav Hapla }
1862cb54e036SVaclav Hapla 
1863cb54e036SVaclav Hapla /*@
1864cb54e036SVaclav Hapla   DMPlexGetOverlap - Get the DMPlex partition overlap.
1865cb54e036SVaclav Hapla 
1866cb54e036SVaclav Hapla   Not collective
1867cb54e036SVaclav Hapla 
1868cb54e036SVaclav Hapla   Input Parameter:
1869cb54e036SVaclav Hapla . dm - The DM
1870cb54e036SVaclav Hapla 
1871cb54e036SVaclav Hapla   Output Parameters:
1872cb54e036SVaclav Hapla . overlap - The overlap of this DM
1873cb54e036SVaclav Hapla 
1874cb54e036SVaclav Hapla   Level: intermediate
1875cb54e036SVaclav Hapla 
1876cb54e036SVaclav Hapla .seealso: DMPlexDistribute(), DMPlexDistributeOverlap(), DMPlexCreateOverlapLabel()
1877cb54e036SVaclav Hapla @*/
1878cb54e036SVaclav Hapla PetscErrorCode DMPlexGetOverlap(DM dm, PetscInt *overlap)
1879cb54e036SVaclav Hapla {
1880cb54e036SVaclav Hapla   PetscErrorCode     ierr;
1881cb54e036SVaclav Hapla 
1882cb54e036SVaclav Hapla   PetscFunctionBegin;
1883cb54e036SVaclav Hapla   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
1884cb54e036SVaclav Hapla   ierr = PetscUseMethod(dm,"DMPlexGetOverlap_C",(DM,PetscInt*),(dm,overlap));CHKERRQ(ierr);
1885cb54e036SVaclav Hapla   PetscFunctionReturn(0);
1886cb54e036SVaclav Hapla }
1887cb54e036SVaclav Hapla 
1888cb54e036SVaclav Hapla 
18896462276dSToby Isaac /*@C
18906462276dSToby Isaac   DMPlexGetGatherDM - Get a copy of the DMPlex that gathers all points on the
18916462276dSToby Isaac   root process of the original's communicator.
18926462276dSToby Isaac 
1893d083f849SBarry Smith   Collective on dm
189483655b49SVáclav Hapla 
18956462276dSToby Isaac   Input Parameters:
18966462276dSToby Isaac . dm - the original DMPlex object
18976462276dSToby Isaac 
18986462276dSToby Isaac   Output Parameters:
1899a13df41bSStefano Zampini + sf - the PetscSF used for point distribution (optional)
1900a13df41bSStefano Zampini - gatherMesh - the gathered DM object, or NULL
19016462276dSToby Isaac 
19026462276dSToby Isaac   Level: intermediate
19036462276dSToby Isaac 
19046462276dSToby Isaac .seealso: DMPlexDistribute(), DMPlexGetRedundantDM()
19056462276dSToby Isaac @*/
1906a13df41bSStefano Zampini PetscErrorCode DMPlexGetGatherDM(DM dm, PetscSF *sf, DM *gatherMesh)
19076462276dSToby Isaac {
19086462276dSToby Isaac   MPI_Comm       comm;
19096462276dSToby Isaac   PetscMPIInt    size;
19106462276dSToby Isaac   PetscPartitioner oldPart, gatherPart;
19116462276dSToby Isaac   PetscErrorCode ierr;
19126462276dSToby Isaac 
19136462276dSToby Isaac   PetscFunctionBegin;
19146462276dSToby Isaac   PetscValidHeaderSpecific(dm,DM_CLASSID,1);
19150c86c063SLisandro Dalcin   PetscValidPointer(gatherMesh,2);
19160c86c063SLisandro Dalcin   *gatherMesh = NULL;
1917a13df41bSStefano Zampini   if (sf) *sf = NULL;
19186462276dSToby Isaac   comm = PetscObjectComm((PetscObject)dm);
19196462276dSToby Isaac   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
19206462276dSToby Isaac   if (size == 1) PetscFunctionReturn(0);
19216462276dSToby Isaac   ierr = DMPlexGetPartitioner(dm,&oldPart);CHKERRQ(ierr);
19226462276dSToby Isaac   ierr = PetscObjectReference((PetscObject)oldPart);CHKERRQ(ierr);
19236462276dSToby Isaac   ierr = PetscPartitionerCreate(comm,&gatherPart);CHKERRQ(ierr);
19246462276dSToby Isaac   ierr = PetscPartitionerSetType(gatherPart,PETSCPARTITIONERGATHER);CHKERRQ(ierr);
19256462276dSToby Isaac   ierr = DMPlexSetPartitioner(dm,gatherPart);CHKERRQ(ierr);
1926a13df41bSStefano Zampini   ierr = DMPlexDistribute(dm,0,sf,gatherMesh);CHKERRQ(ierr);
1927a13df41bSStefano Zampini 
19286462276dSToby Isaac   ierr = DMPlexSetPartitioner(dm,oldPart);CHKERRQ(ierr);
19296462276dSToby Isaac   ierr = PetscPartitionerDestroy(&gatherPart);CHKERRQ(ierr);
19306462276dSToby Isaac   ierr = PetscPartitionerDestroy(&oldPart);CHKERRQ(ierr);
19316462276dSToby Isaac   PetscFunctionReturn(0);
19326462276dSToby Isaac }
19336462276dSToby Isaac 
19346462276dSToby Isaac /*@C
19356462276dSToby Isaac   DMPlexGetRedundantDM - Get a copy of the DMPlex that is completely copied on each process.
19366462276dSToby Isaac 
1937d083f849SBarry Smith   Collective on dm
193883655b49SVáclav Hapla 
19396462276dSToby Isaac   Input Parameters:
19406462276dSToby Isaac . dm - the original DMPlex object
19416462276dSToby Isaac 
19426462276dSToby Isaac   Output Parameters:
1943a13df41bSStefano Zampini + sf - the PetscSF used for point distribution (optional)
1944a13df41bSStefano Zampini - redundantMesh - the redundant DM object, or NULL
19456462276dSToby Isaac 
19466462276dSToby Isaac   Level: intermediate
19476462276dSToby Isaac 
19486462276dSToby Isaac .seealso: DMPlexDistribute(), DMPlexGetGatherDM()
19496462276dSToby Isaac @*/
1950a13df41bSStefano Zampini PetscErrorCode DMPlexGetRedundantDM(DM dm, PetscSF *sf, DM *redundantMesh)
19516462276dSToby Isaac {
19526462276dSToby Isaac   MPI_Comm       comm;
19536462276dSToby Isaac   PetscMPIInt    size, rank;
19546462276dSToby Isaac   PetscInt       pStart, pEnd, p;
19556462276dSToby Isaac   PetscInt       numPoints = -1;
1956a13df41bSStefano Zampini   PetscSF        migrationSF, sfPoint, gatherSF;
19576462276dSToby Isaac   DM             gatherDM, dmCoord;
19586462276dSToby Isaac   PetscSFNode    *points;
19596462276dSToby Isaac   PetscErrorCode ierr;
19606462276dSToby Isaac 
19616462276dSToby Isaac   PetscFunctionBegin;
19626462276dSToby Isaac   PetscValidHeaderSpecific(dm,DM_CLASSID,1);
19630c86c063SLisandro Dalcin   PetscValidPointer(redundantMesh,2);
19640c86c063SLisandro Dalcin   *redundantMesh = NULL;
19656462276dSToby Isaac   comm = PetscObjectComm((PetscObject)dm);
19666462276dSToby Isaac   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
196768dbc166SMatthew G. Knepley   if (size == 1) {
196868dbc166SMatthew G. Knepley     ierr = PetscObjectReference((PetscObject) dm);CHKERRQ(ierr);
196968dbc166SMatthew G. Knepley     *redundantMesh = dm;
1970a13df41bSStefano Zampini     if (sf) *sf = NULL;
197168dbc166SMatthew G. Knepley     PetscFunctionReturn(0);
197268dbc166SMatthew G. Knepley   }
1973a13df41bSStefano Zampini   ierr = DMPlexGetGatherDM(dm,&gatherSF,&gatherDM);CHKERRQ(ierr);
19746462276dSToby Isaac   if (!gatherDM) PetscFunctionReturn(0);
19756462276dSToby Isaac   ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr);
19766462276dSToby Isaac   ierr = DMPlexGetChart(gatherDM,&pStart,&pEnd);CHKERRQ(ierr);
19776462276dSToby Isaac   numPoints = pEnd - pStart;
19786462276dSToby Isaac   ierr = MPI_Bcast(&numPoints,1,MPIU_INT,0,comm);CHKERRQ(ierr);
19796462276dSToby Isaac   ierr = PetscMalloc1(numPoints,&points);CHKERRQ(ierr);
19806462276dSToby Isaac   ierr = PetscSFCreate(comm,&migrationSF);CHKERRQ(ierr);
19816462276dSToby Isaac   for (p = 0; p < numPoints; p++) {
19826462276dSToby Isaac     points[p].index = p;
19836462276dSToby Isaac     points[p].rank  = 0;
19846462276dSToby Isaac   }
19856462276dSToby Isaac   ierr = PetscSFSetGraph(migrationSF,pEnd-pStart,numPoints,NULL,PETSC_OWN_POINTER,points,PETSC_OWN_POINTER);CHKERRQ(ierr);
19866462276dSToby Isaac   ierr = DMPlexCreate(comm, redundantMesh);CHKERRQ(ierr);
19876462276dSToby Isaac   ierr = PetscObjectSetName((PetscObject) *redundantMesh, "Redundant Mesh");CHKERRQ(ierr);
19886462276dSToby Isaac   ierr = DMPlexMigrate(gatherDM, migrationSF, *redundantMesh);CHKERRQ(ierr);
19896462276dSToby Isaac   ierr = DMPlexCreatePointSF(*redundantMesh, migrationSF, PETSC_FALSE, &sfPoint);CHKERRQ(ierr);
19906462276dSToby Isaac   ierr = DMSetPointSF(*redundantMesh, sfPoint);CHKERRQ(ierr);
19916462276dSToby Isaac   ierr = DMGetCoordinateDM(*redundantMesh, &dmCoord);CHKERRQ(ierr);
19926462276dSToby Isaac   if (dmCoord) {ierr = DMSetPointSF(dmCoord, sfPoint);CHKERRQ(ierr);}
19936462276dSToby Isaac   ierr = PetscSFDestroy(&sfPoint);CHKERRQ(ierr);
1994a13df41bSStefano Zampini   if (sf) {
1995a13df41bSStefano Zampini     PetscSF tsf;
1996a13df41bSStefano Zampini 
1997a13df41bSStefano Zampini     ierr = PetscSFCompose(gatherSF,migrationSF,&tsf);CHKERRQ(ierr);
1998a13df41bSStefano Zampini     ierr = DMPlexStratifyMigrationSF(dm, tsf, sf);CHKERRQ(ierr);
1999a13df41bSStefano Zampini     ierr = PetscSFDestroy(&tsf);CHKERRQ(ierr);
2000a13df41bSStefano Zampini   }
20016462276dSToby Isaac   ierr = PetscSFDestroy(&migrationSF);CHKERRQ(ierr);
2002a13df41bSStefano Zampini   ierr = PetscSFDestroy(&gatherSF);CHKERRQ(ierr);
20036462276dSToby Isaac   ierr = DMDestroy(&gatherDM);CHKERRQ(ierr);
20046462276dSToby Isaac   PetscFunctionReturn(0);
20056462276dSToby Isaac }
2006*5fa78c88SVaclav Hapla 
2007*5fa78c88SVaclav Hapla /*@
2008*5fa78c88SVaclav Hapla   DMPlexIsDistributed - Find out whether this DM is distributed, i.e. more than one rank owns some points.
2009*5fa78c88SVaclav Hapla 
2010*5fa78c88SVaclav Hapla   Collective
2011*5fa78c88SVaclav Hapla 
2012*5fa78c88SVaclav Hapla   Input Parameter:
2013*5fa78c88SVaclav Hapla . dm      - The DM object
2014*5fa78c88SVaclav Hapla 
2015*5fa78c88SVaclav Hapla   Output Parameter:
2016*5fa78c88SVaclav Hapla . distributed - Flag whether the DM is distributed
2017*5fa78c88SVaclav Hapla 
2018*5fa78c88SVaclav Hapla   Level: intermediate
2019*5fa78c88SVaclav Hapla 
2020*5fa78c88SVaclav Hapla   Notes:
2021*5fa78c88SVaclav Hapla   This currently finds out whether at least two ranks have any DAG points.
2022*5fa78c88SVaclav Hapla   This involves MPI_Allreduce() with one integer.
2023*5fa78c88SVaclav Hapla   The result is currently not stashed so every call to this routine involves this global communication.
2024*5fa78c88SVaclav Hapla 
2025*5fa78c88SVaclav Hapla .seealso: DMPlexDistribute(), DMPlexGetOverlap(), DMPlexIsInterpolated()
2026*5fa78c88SVaclav Hapla @*/
2027*5fa78c88SVaclav Hapla PetscErrorCode DMPlexIsDistributed(DM dm, PetscBool *distributed)
2028*5fa78c88SVaclav Hapla {
2029*5fa78c88SVaclav Hapla   PetscInt          pStart, pEnd, count;
2030*5fa78c88SVaclav Hapla   MPI_Comm          comm;
2031*5fa78c88SVaclav Hapla   PetscErrorCode    ierr;
2032*5fa78c88SVaclav Hapla 
2033*5fa78c88SVaclav Hapla   PetscFunctionBegin;
2034*5fa78c88SVaclav Hapla   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
2035*5fa78c88SVaclav Hapla   PetscValidPointer(distributed,2);
2036*5fa78c88SVaclav Hapla   ierr = PetscObjectGetComm((PetscObject)dm,&comm);CHKERRQ(ierr);
2037*5fa78c88SVaclav Hapla   ierr = DMPlexGetChart(dm, &pStart, &pEnd);CHKERRQ(ierr);
2038*5fa78c88SVaclav Hapla   count = !!(pEnd - pStart);
2039*5fa78c88SVaclav Hapla   ierr = MPI_Allreduce(MPI_IN_PLACE, &count, 1, MPIU_INT, MPI_SUM, comm);CHKERRQ(ierr);
2040*5fa78c88SVaclav Hapla   *distributed = count > 1 ? PETSC_TRUE : PETSC_FALSE;
2041*5fa78c88SVaclav Hapla   PetscFunctionReturn(0);
2042*5fa78c88SVaclav Hapla }
2043