1af0996ceSBarry Smith #include <petsc/private/dmpleximpl.h> /*I "petscdmplex.h" I*/ 2c58f1c22SToby Isaac #include <petsc/private/dmlabelimpl.h> /*I "petscdmlabel.h" I*/ 370034214SMatthew G. Knepley 43c1f0c11SLawrence Mitchell /*@C 53c1f0c11SLawrence Mitchell DMPlexSetAdjacencyUser - Define adjacency in the mesh using a user-provided callback 63c1f0c11SLawrence Mitchell 73c1f0c11SLawrence Mitchell Input Parameters: 83c1f0c11SLawrence Mitchell + dm - The DM object 93c1f0c11SLawrence Mitchell . user - The user callback, may be NULL (to clear the callback) 103c1f0c11SLawrence Mitchell - ctx - context for callback evaluation, may be NULL 113c1f0c11SLawrence Mitchell 123c1f0c11SLawrence Mitchell Level: advanced 133c1f0c11SLawrence Mitchell 143c1f0c11SLawrence Mitchell Notes: 153c1f0c11SLawrence Mitchell The caller of DMPlexGetAdjacency may need to arrange that a large enough array is available for the adjacency. 163c1f0c11SLawrence Mitchell 173c1f0c11SLawrence Mitchell Any setting here overrides other configuration of DMPlex adjacency determination. 183c1f0c11SLawrence Mitchell 19b0441da4SMatthew G. Knepley .seealso: DMSetAdjacency(), DMPlexDistribute(), DMPlexPreallocateOperator(), DMPlexGetAdjacency(), DMPlexGetAdjacencyUser() 203c1f0c11SLawrence Mitchell @*/ 213c1f0c11SLawrence Mitchell PetscErrorCode DMPlexSetAdjacencyUser(DM dm,PetscErrorCode (*user)(DM,PetscInt,PetscInt*,PetscInt[],void*),void *ctx) 223c1f0c11SLawrence Mitchell { 233c1f0c11SLawrence Mitchell DM_Plex *mesh = (DM_Plex *)dm->data; 243c1f0c11SLawrence Mitchell 253c1f0c11SLawrence Mitchell PetscFunctionBegin; 263c1f0c11SLawrence Mitchell PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 273c1f0c11SLawrence Mitchell mesh->useradjacency = user; 283c1f0c11SLawrence Mitchell mesh->useradjacencyctx = ctx; 293c1f0c11SLawrence Mitchell PetscFunctionReturn(0); 303c1f0c11SLawrence Mitchell } 313c1f0c11SLawrence Mitchell 323c1f0c11SLawrence Mitchell /*@C 333c1f0c11SLawrence Mitchell DMPlexGetAdjacencyUser - get the user-defined adjacency callback 343c1f0c11SLawrence Mitchell 353c1f0c11SLawrence Mitchell Input Parameter: 363c1f0c11SLawrence Mitchell . dm - The DM object 373c1f0c11SLawrence Mitchell 383c1f0c11SLawrence Mitchell Output Parameters: 393c1f0c11SLawrence Mitchell - user - The user callback 403c1f0c11SLawrence Mitchell - ctx - context for callback evaluation 413c1f0c11SLawrence Mitchell 423c1f0c11SLawrence Mitchell Level: advanced 433c1f0c11SLawrence Mitchell 44b0441da4SMatthew G. Knepley .seealso: DMSetAdjacency(), DMPlexDistribute(), DMPlexPreallocateOperator(), DMPlexGetAdjacency(), DMPlexSetAdjacencyUser() 453c1f0c11SLawrence Mitchell @*/ 463c1f0c11SLawrence Mitchell PetscErrorCode DMPlexGetAdjacencyUser(DM dm, PetscErrorCode (**user)(DM,PetscInt,PetscInt*,PetscInt[],void*), void **ctx) 473c1f0c11SLawrence Mitchell { 483c1f0c11SLawrence Mitchell DM_Plex *mesh = (DM_Plex *)dm->data; 493c1f0c11SLawrence Mitchell 503c1f0c11SLawrence Mitchell PetscFunctionBegin; 513c1f0c11SLawrence Mitchell PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 523c1f0c11SLawrence Mitchell if (user) *user = mesh->useradjacency; 533c1f0c11SLawrence Mitchell if (ctx) *ctx = mesh->useradjacencyctx; 543c1f0c11SLawrence Mitchell PetscFunctionReturn(0); 553c1f0c11SLawrence Mitchell } 563c1f0c11SLawrence Mitchell 5770034214SMatthew G. Knepley /*@ 58a17985deSToby Isaac DMPlexSetAdjacencyUseAnchors - Define adjacency in the mesh using the point-to-point constraints. 598b0b4c70SToby Isaac 608b0b4c70SToby Isaac Input Parameters: 618b0b4c70SToby Isaac + dm - The DM object 625b317d89SToby Isaac - useAnchors - Flag to use the constraints. If PETSC_TRUE, then constrained points are omitted from DMPlexGetAdjacency(), and their anchor points appear in their place. 638b0b4c70SToby Isaac 648b0b4c70SToby Isaac Level: intermediate 658b0b4c70SToby Isaac 66b0441da4SMatthew G. Knepley .seealso: DMGetAdjacency(), DMSetAdjacency(), DMPlexDistribute(), DMPlexPreallocateOperator(), DMPlexSetAnchors() 678b0b4c70SToby Isaac @*/ 685b317d89SToby Isaac PetscErrorCode DMPlexSetAdjacencyUseAnchors(DM dm, PetscBool useAnchors) 698b0b4c70SToby Isaac { 708b0b4c70SToby Isaac DM_Plex *mesh = (DM_Plex *) dm->data; 718b0b4c70SToby Isaac 728b0b4c70SToby Isaac PetscFunctionBegin; 738b0b4c70SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 745b317d89SToby Isaac mesh->useAnchors = useAnchors; 758b0b4c70SToby Isaac PetscFunctionReturn(0); 768b0b4c70SToby Isaac } 778b0b4c70SToby Isaac 788b0b4c70SToby Isaac /*@ 79a17985deSToby Isaac DMPlexGetAdjacencyUseAnchors - Query whether adjacency in the mesh uses the point-to-point constraints. 808b0b4c70SToby Isaac 818b0b4c70SToby Isaac Input Parameter: 828b0b4c70SToby Isaac . dm - The DM object 838b0b4c70SToby Isaac 848b0b4c70SToby Isaac Output Parameter: 855b317d89SToby Isaac . useAnchors - Flag to use the closure. If PETSC_TRUE, then constrained points are omitted from DMPlexGetAdjacency(), and their anchor points appear in their place. 868b0b4c70SToby Isaac 878b0b4c70SToby Isaac Level: intermediate 888b0b4c70SToby Isaac 89b0441da4SMatthew G. Knepley .seealso: DMPlexSetAdjacencyUseAnchors(), DMSetAdjacency(), DMGetAdjacency(), DMPlexDistribute(), DMPlexPreallocateOperator(), DMPlexSetAnchors() 908b0b4c70SToby Isaac @*/ 915b317d89SToby Isaac PetscErrorCode DMPlexGetAdjacencyUseAnchors(DM dm, PetscBool *useAnchors) 928b0b4c70SToby Isaac { 938b0b4c70SToby Isaac DM_Plex *mesh = (DM_Plex *) dm->data; 948b0b4c70SToby Isaac 958b0b4c70SToby Isaac PetscFunctionBegin; 968b0b4c70SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 975b317d89SToby Isaac PetscValidIntPointer(useAnchors, 2); 985b317d89SToby Isaac *useAnchors = mesh->useAnchors; 998b0b4c70SToby Isaac PetscFunctionReturn(0); 1008b0b4c70SToby Isaac } 1018b0b4c70SToby Isaac 10270034214SMatthew G. Knepley static PetscErrorCode DMPlexGetAdjacency_Cone_Internal(DM dm, PetscInt p, PetscInt *adjSize, PetscInt adj[]) 10370034214SMatthew G. Knepley { 10470034214SMatthew G. Knepley const PetscInt *cone = NULL; 10570034214SMatthew G. Knepley PetscInt numAdj = 0, maxAdjSize = *adjSize, coneSize, c; 10670034214SMatthew G. Knepley PetscErrorCode ierr; 10770034214SMatthew G. Knepley 10870034214SMatthew G. Knepley PetscFunctionBeginHot; 10970034214SMatthew G. Knepley ierr = DMPlexGetConeSize(dm, p, &coneSize);CHKERRQ(ierr); 11070034214SMatthew G. Knepley ierr = DMPlexGetCone(dm, p, &cone);CHKERRQ(ierr); 1114b6b44bdSMatthew G. Knepley for (c = 0; c <= coneSize; ++c) { 1124b6b44bdSMatthew G. Knepley const PetscInt point = !c ? p : cone[c-1]; 11370034214SMatthew G. Knepley const PetscInt *support = NULL; 11470034214SMatthew G. Knepley PetscInt supportSize, s, q; 11570034214SMatthew G. Knepley 1164b6b44bdSMatthew G. Knepley ierr = DMPlexGetSupportSize(dm, point, &supportSize);CHKERRQ(ierr); 1174b6b44bdSMatthew G. Knepley ierr = DMPlexGetSupport(dm, point, &support);CHKERRQ(ierr); 11870034214SMatthew G. Knepley for (s = 0; s < supportSize; ++s) { 119527e7439SSatish Balay for (q = 0; q < numAdj || ((void)(adj[numAdj++] = support[s]),0); ++q) { 12070034214SMatthew G. Knepley if (support[s] == adj[q]) break; 12170034214SMatthew G. Knepley } 12270034214SMatthew G. Knepley if (numAdj > maxAdjSize) SETERRQ1(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid mesh exceeded adjacency allocation (%D)", maxAdjSize); 12370034214SMatthew G. Knepley } 12470034214SMatthew G. Knepley } 12570034214SMatthew G. Knepley *adjSize = numAdj; 12670034214SMatthew G. Knepley PetscFunctionReturn(0); 12770034214SMatthew G. Knepley } 12870034214SMatthew G. Knepley 12970034214SMatthew G. Knepley static PetscErrorCode DMPlexGetAdjacency_Support_Internal(DM dm, PetscInt p, PetscInt *adjSize, PetscInt adj[]) 13070034214SMatthew G. Knepley { 13170034214SMatthew G. Knepley const PetscInt *support = NULL; 13270034214SMatthew G. Knepley PetscInt numAdj = 0, maxAdjSize = *adjSize, supportSize, s; 13370034214SMatthew G. Knepley PetscErrorCode ierr; 13470034214SMatthew G. Knepley 13570034214SMatthew G. Knepley PetscFunctionBeginHot; 13670034214SMatthew G. Knepley ierr = DMPlexGetSupportSize(dm, p, &supportSize);CHKERRQ(ierr); 13770034214SMatthew G. Knepley ierr = DMPlexGetSupport(dm, p, &support);CHKERRQ(ierr); 1384b6b44bdSMatthew G. Knepley for (s = 0; s <= supportSize; ++s) { 1394b6b44bdSMatthew G. Knepley const PetscInt point = !s ? p : support[s-1]; 14070034214SMatthew G. Knepley const PetscInt *cone = NULL; 14170034214SMatthew G. Knepley PetscInt coneSize, c, q; 14270034214SMatthew G. Knepley 1434b6b44bdSMatthew G. Knepley ierr = DMPlexGetConeSize(dm, point, &coneSize);CHKERRQ(ierr); 1444b6b44bdSMatthew G. Knepley ierr = DMPlexGetCone(dm, point, &cone);CHKERRQ(ierr); 14570034214SMatthew G. Knepley for (c = 0; c < coneSize; ++c) { 146527e7439SSatish Balay for (q = 0; q < numAdj || ((void)(adj[numAdj++] = cone[c]),0); ++q) { 14770034214SMatthew G. Knepley if (cone[c] == adj[q]) break; 14870034214SMatthew G. Knepley } 14970034214SMatthew G. Knepley if (numAdj > maxAdjSize) SETERRQ1(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid mesh exceeded adjacency allocation (%D)", maxAdjSize); 15070034214SMatthew G. Knepley } 15170034214SMatthew G. Knepley } 15270034214SMatthew G. Knepley *adjSize = numAdj; 15370034214SMatthew G. Knepley PetscFunctionReturn(0); 15470034214SMatthew G. Knepley } 15570034214SMatthew G. Knepley 15670034214SMatthew G. Knepley static PetscErrorCode DMPlexGetAdjacency_Transitive_Internal(DM dm, PetscInt p, PetscBool useClosure, PetscInt *adjSize, PetscInt adj[]) 15770034214SMatthew G. Knepley { 15870034214SMatthew G. Knepley PetscInt *star = NULL; 15970034214SMatthew G. Knepley PetscInt numAdj = 0, maxAdjSize = *adjSize, starSize, s; 16070034214SMatthew G. Knepley PetscErrorCode ierr; 16170034214SMatthew G. Knepley 16270034214SMatthew G. Knepley PetscFunctionBeginHot; 16370034214SMatthew G. Knepley ierr = DMPlexGetTransitiveClosure(dm, p, useClosure, &starSize, &star);CHKERRQ(ierr); 16470034214SMatthew G. Knepley for (s = 0; s < starSize*2; s += 2) { 16570034214SMatthew G. Knepley const PetscInt *closure = NULL; 16670034214SMatthew G. Knepley PetscInt closureSize, c, q; 16770034214SMatthew G. Knepley 16870034214SMatthew G. Knepley ierr = DMPlexGetTransitiveClosure(dm, star[s], (PetscBool)!useClosure, &closureSize, (PetscInt**) &closure);CHKERRQ(ierr); 16970034214SMatthew G. Knepley for (c = 0; c < closureSize*2; c += 2) { 170527e7439SSatish Balay for (q = 0; q < numAdj || ((void)(adj[numAdj++] = closure[c]),0); ++q) { 17170034214SMatthew G. Knepley if (closure[c] == adj[q]) break; 17270034214SMatthew G. Knepley } 17370034214SMatthew G. Knepley if (numAdj > maxAdjSize) SETERRQ1(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid mesh exceeded adjacency allocation (%D)", maxAdjSize); 17470034214SMatthew G. Knepley } 17570034214SMatthew G. Knepley ierr = DMPlexRestoreTransitiveClosure(dm, star[s], (PetscBool)!useClosure, &closureSize, (PetscInt**) &closure);CHKERRQ(ierr); 17670034214SMatthew G. Knepley } 17770034214SMatthew G. Knepley ierr = DMPlexRestoreTransitiveClosure(dm, p, useClosure, &starSize, &star);CHKERRQ(ierr); 17870034214SMatthew G. Knepley *adjSize = numAdj; 17970034214SMatthew G. Knepley PetscFunctionReturn(0); 18070034214SMatthew G. Knepley } 18170034214SMatthew G. Knepley 1825b317d89SToby Isaac PetscErrorCode DMPlexGetAdjacency_Internal(DM dm, PetscInt p, PetscBool useCone, PetscBool useTransitiveClosure, PetscBool useAnchors, PetscInt *adjSize, PetscInt *adj[]) 18370034214SMatthew G. Knepley { 18479bad331SMatthew G. Knepley static PetscInt asiz = 0; 1858b0b4c70SToby Isaac PetscInt maxAnchors = 1; 1868b0b4c70SToby Isaac PetscInt aStart = -1, aEnd = -1; 1878b0b4c70SToby Isaac PetscInt maxAdjSize; 1888b0b4c70SToby Isaac PetscSection aSec = NULL; 1898b0b4c70SToby Isaac IS aIS = NULL; 1908b0b4c70SToby Isaac const PetscInt *anchors; 1913c1f0c11SLawrence Mitchell DM_Plex *mesh = (DM_Plex *)dm->data; 19270034214SMatthew G. Knepley PetscErrorCode ierr; 19370034214SMatthew G. Knepley 19470034214SMatthew G. Knepley PetscFunctionBeginHot; 1955b317d89SToby Isaac if (useAnchors) { 196a17985deSToby Isaac ierr = DMPlexGetAnchors(dm,&aSec,&aIS);CHKERRQ(ierr); 1978b0b4c70SToby Isaac if (aSec) { 1988b0b4c70SToby Isaac ierr = PetscSectionGetMaxDof(aSec,&maxAnchors);CHKERRQ(ierr); 19924c766afSToby Isaac maxAnchors = PetscMax(1,maxAnchors); 2008b0b4c70SToby Isaac ierr = PetscSectionGetChart(aSec,&aStart,&aEnd);CHKERRQ(ierr); 2018b0b4c70SToby Isaac ierr = ISGetIndices(aIS,&anchors);CHKERRQ(ierr); 2028b0b4c70SToby Isaac } 2038b0b4c70SToby Isaac } 20479bad331SMatthew G. Knepley if (!*adj) { 20524c766afSToby Isaac PetscInt depth, coneSeries, supportSeries, maxC, maxS, pStart, pEnd; 20679bad331SMatthew G. Knepley 20724c766afSToby Isaac ierr = DMPlexGetChart(dm, &pStart,&pEnd);CHKERRQ(ierr); 20879bad331SMatthew G. Knepley ierr = DMPlexGetDepth(dm, &depth);CHKERRQ(ierr); 20924c766afSToby Isaac ierr = DMPlexGetMaxSizes(dm, &maxC, &maxS);CHKERRQ(ierr); 21024c766afSToby Isaac coneSeries = (maxC > 1) ? ((PetscPowInt(maxC,depth+1)-1)/(maxC-1)) : depth+1; 21124c766afSToby Isaac supportSeries = (maxS > 1) ? ((PetscPowInt(maxS,depth+1)-1)/(maxS-1)) : depth+1; 21224c766afSToby Isaac asiz = PetscMax(PetscPowInt(maxS,depth)*coneSeries,PetscPowInt(maxC,depth)*supportSeries); 2138b0b4c70SToby Isaac asiz *= maxAnchors; 21424c766afSToby Isaac asiz = PetscMin(asiz,pEnd-pStart); 21579bad331SMatthew G. Knepley ierr = PetscMalloc1(asiz,adj);CHKERRQ(ierr); 21679bad331SMatthew G. Knepley } 21779bad331SMatthew G. Knepley if (*adjSize < 0) *adjSize = asiz; 2188b0b4c70SToby Isaac maxAdjSize = *adjSize; 2193c1f0c11SLawrence Mitchell if (mesh->useradjacency) { 2203c1f0c11SLawrence Mitchell ierr = mesh->useradjacency(dm, p, adjSize, *adj, mesh->useradjacencyctx);CHKERRQ(ierr); 2213c1f0c11SLawrence Mitchell } else if (useTransitiveClosure) { 22279bad331SMatthew G. Knepley ierr = DMPlexGetAdjacency_Transitive_Internal(dm, p, useCone, adjSize, *adj);CHKERRQ(ierr); 22370034214SMatthew G. Knepley } else if (useCone) { 22479bad331SMatthew G. Knepley ierr = DMPlexGetAdjacency_Cone_Internal(dm, p, adjSize, *adj);CHKERRQ(ierr); 22570034214SMatthew G. Knepley } else { 22679bad331SMatthew G. Knepley ierr = DMPlexGetAdjacency_Support_Internal(dm, p, adjSize, *adj);CHKERRQ(ierr); 22770034214SMatthew G. Knepley } 2285b317d89SToby Isaac if (useAnchors && aSec) { 2298b0b4c70SToby Isaac PetscInt origSize = *adjSize; 2308b0b4c70SToby Isaac PetscInt numAdj = origSize; 2318b0b4c70SToby Isaac PetscInt i = 0, j; 2328b0b4c70SToby Isaac PetscInt *orig = *adj; 2338b0b4c70SToby Isaac 2348b0b4c70SToby Isaac while (i < origSize) { 2358b0b4c70SToby Isaac PetscInt p = orig[i]; 2368b0b4c70SToby Isaac PetscInt aDof = 0; 2378b0b4c70SToby Isaac 2388b0b4c70SToby Isaac if (p >= aStart && p < aEnd) { 2398b0b4c70SToby Isaac ierr = PetscSectionGetDof(aSec,p,&aDof);CHKERRQ(ierr); 2408b0b4c70SToby Isaac } 2418b0b4c70SToby Isaac if (aDof) { 2428b0b4c70SToby Isaac PetscInt aOff; 2438b0b4c70SToby Isaac PetscInt s, q; 2448b0b4c70SToby Isaac 2458b0b4c70SToby Isaac for (j = i + 1; j < numAdj; j++) { 2468b0b4c70SToby Isaac orig[j - 1] = orig[j]; 2478b0b4c70SToby Isaac } 2488b0b4c70SToby Isaac origSize--; 2498b0b4c70SToby Isaac numAdj--; 2508b0b4c70SToby Isaac ierr = PetscSectionGetOffset(aSec,p,&aOff);CHKERRQ(ierr); 2518b0b4c70SToby Isaac for (s = 0; s < aDof; ++s) { 252527e7439SSatish Balay for (q = 0; q < numAdj || ((void)(orig[numAdj++] = anchors[aOff+s]),0); ++q) { 2538b0b4c70SToby Isaac if (anchors[aOff+s] == orig[q]) break; 2548b0b4c70SToby Isaac } 2558b0b4c70SToby Isaac if (numAdj > maxAdjSize) SETERRQ1(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid mesh exceeded adjacency allocation (%D)", maxAdjSize); 2568b0b4c70SToby Isaac } 2578b0b4c70SToby Isaac } 2588b0b4c70SToby Isaac else { 2598b0b4c70SToby Isaac i++; 2608b0b4c70SToby Isaac } 2618b0b4c70SToby Isaac } 2628b0b4c70SToby Isaac *adjSize = numAdj; 2638b0b4c70SToby Isaac ierr = ISRestoreIndices(aIS,&anchors);CHKERRQ(ierr); 2648b0b4c70SToby Isaac } 26570034214SMatthew G. Knepley PetscFunctionReturn(0); 26670034214SMatthew G. Knepley } 26770034214SMatthew G. Knepley 26870034214SMatthew G. Knepley /*@ 26970034214SMatthew G. Knepley DMPlexGetAdjacency - Return all points adjacent to the given point 27070034214SMatthew G. Knepley 27170034214SMatthew G. Knepley Input Parameters: 27270034214SMatthew G. Knepley + dm - The DM object 27370034214SMatthew G. Knepley . p - The point 27470034214SMatthew G. Knepley . adjSize - The maximum size of adj if it is non-NULL, or PETSC_DETERMINE 27570034214SMatthew G. Knepley - adj - Either NULL so that the array is allocated, or an existing array with size adjSize 27670034214SMatthew G. Knepley 27770034214SMatthew G. Knepley Output Parameters: 27870034214SMatthew G. Knepley + adjSize - The number of adjacent points 27970034214SMatthew G. Knepley - adj - The adjacent points 28070034214SMatthew G. Knepley 28170034214SMatthew G. Knepley Level: advanced 28270034214SMatthew G. Knepley 28395452b02SPatrick Sanan Notes: 28495452b02SPatrick Sanan The user must PetscFree the adj array if it was not passed in. 28570034214SMatthew G. Knepley 286b0441da4SMatthew G. Knepley .seealso: DMSetAdjacency(), DMPlexDistribute(), DMCreateMatrix(), DMPlexPreallocateOperator() 28770034214SMatthew G. Knepley @*/ 28870034214SMatthew G. Knepley PetscErrorCode DMPlexGetAdjacency(DM dm, PetscInt p, PetscInt *adjSize, PetscInt *adj[]) 28970034214SMatthew G. Knepley { 2901cf84007SMatthew G. Knepley PetscBool useCone, useClosure, useAnchors; 29170034214SMatthew G. Knepley PetscErrorCode ierr; 29270034214SMatthew G. Knepley 29370034214SMatthew G. Knepley PetscFunctionBeginHot; 29470034214SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 29570034214SMatthew G. Knepley PetscValidPointer(adjSize,3); 29670034214SMatthew G. Knepley PetscValidPointer(adj,4); 297b0441da4SMatthew G. Knepley ierr = DMGetBasicAdjacency(dm, &useCone, &useClosure);CHKERRQ(ierr); 2981cf84007SMatthew G. Knepley ierr = DMPlexGetAdjacencyUseAnchors(dm, &useAnchors);CHKERRQ(ierr); 2991cf84007SMatthew G. Knepley ierr = DMPlexGetAdjacency_Internal(dm, p, useCone, useClosure, useAnchors, adjSize, adj);CHKERRQ(ierr); 30070034214SMatthew G. Knepley PetscFunctionReturn(0); 30170034214SMatthew G. Knepley } 30208633170SToby Isaac 303b0a623aaSMatthew G. Knepley /*@ 304b0a623aaSMatthew G. Knepley DMPlexCreateTwoSidedProcessSF - Create an SF which just has process connectivity 305b0a623aaSMatthew G. Knepley 306b0a623aaSMatthew G. Knepley Collective on DM 307b0a623aaSMatthew G. Knepley 308b0a623aaSMatthew G. Knepley Input Parameters: 309b0a623aaSMatthew G. Knepley + dm - The DM 310b0a623aaSMatthew G. Knepley - sfPoint - The PetscSF which encodes point connectivity 311b0a623aaSMatthew G. Knepley 312b0a623aaSMatthew G. Knepley Output Parameters: 313b0a623aaSMatthew G. Knepley + processRanks - A list of process neighbors, or NULL 314b0a623aaSMatthew G. Knepley - sfProcess - An SF encoding the two-sided process connectivity, or NULL 315b0a623aaSMatthew G. Knepley 316b0a623aaSMatthew G. Knepley Level: developer 317b0a623aaSMatthew G. Knepley 318b0a623aaSMatthew G. Knepley .seealso: PetscSFCreate(), DMPlexCreateProcessSF() 319b0a623aaSMatthew G. Knepley @*/ 320b0a623aaSMatthew G. Knepley PetscErrorCode DMPlexCreateTwoSidedProcessSF(DM dm, PetscSF sfPoint, PetscSection rootRankSection, IS rootRanks, PetscSection leafRankSection, IS leafRanks, IS *processRanks, PetscSF *sfProcess) 321b0a623aaSMatthew G. Knepley { 322b0a623aaSMatthew G. Knepley const PetscSFNode *remotePoints; 323b0a623aaSMatthew G. Knepley PetscInt *localPointsNew; 324b0a623aaSMatthew G. Knepley PetscSFNode *remotePointsNew; 325b0a623aaSMatthew G. Knepley const PetscInt *nranks; 326b0a623aaSMatthew G. Knepley PetscInt *ranksNew; 327b0a623aaSMatthew G. Knepley PetscBT neighbors; 328b0a623aaSMatthew G. Knepley PetscInt pStart, pEnd, p, numLeaves, l, numNeighbors, n; 3299852e123SBarry Smith PetscMPIInt size, proc, rank; 330b0a623aaSMatthew G. Knepley PetscErrorCode ierr; 331b0a623aaSMatthew G. Knepley 332b0a623aaSMatthew G. Knepley PetscFunctionBegin; 333b0a623aaSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 334b0a623aaSMatthew G. Knepley PetscValidHeaderSpecific(sfPoint, PETSCSF_CLASSID, 2); 335b0a623aaSMatthew G. Knepley if (processRanks) {PetscValidPointer(processRanks, 3);} 336b0a623aaSMatthew G. Knepley if (sfProcess) {PetscValidPointer(sfProcess, 4);} 3379852e123SBarry Smith ierr = MPI_Comm_size(PetscObjectComm((PetscObject) dm), &size);CHKERRQ(ierr); 338b0a623aaSMatthew G. Knepley ierr = MPI_Comm_rank(PetscObjectComm((PetscObject) dm), &rank);CHKERRQ(ierr); 339b0a623aaSMatthew G. Knepley ierr = PetscSFGetGraph(sfPoint, NULL, &numLeaves, NULL, &remotePoints);CHKERRQ(ierr); 3409852e123SBarry Smith ierr = PetscBTCreate(size, &neighbors);CHKERRQ(ierr); 3419852e123SBarry Smith ierr = PetscBTMemzero(size, neighbors);CHKERRQ(ierr); 342b0a623aaSMatthew G. Knepley /* Compute root-to-leaf process connectivity */ 343b0a623aaSMatthew G. Knepley ierr = PetscSectionGetChart(rootRankSection, &pStart, &pEnd);CHKERRQ(ierr); 344b0a623aaSMatthew G. Knepley ierr = ISGetIndices(rootRanks, &nranks);CHKERRQ(ierr); 345b0a623aaSMatthew G. Knepley for (p = pStart; p < pEnd; ++p) { 346b0a623aaSMatthew G. Knepley PetscInt ndof, noff, n; 347b0a623aaSMatthew G. Knepley 348b0a623aaSMatthew G. Knepley ierr = PetscSectionGetDof(rootRankSection, p, &ndof);CHKERRQ(ierr); 349b0a623aaSMatthew G. Knepley ierr = PetscSectionGetOffset(rootRankSection, p, &noff);CHKERRQ(ierr); 350302440fdSBarry Smith for (n = 0; n < ndof; ++n) {ierr = PetscBTSet(neighbors, nranks[noff+n]);CHKERRQ(ierr);} 351b0a623aaSMatthew G. Knepley } 352b0a623aaSMatthew G. Knepley ierr = ISRestoreIndices(rootRanks, &nranks);CHKERRQ(ierr); 353b0a623aaSMatthew G. Knepley /* Compute leaf-to-neighbor process connectivity */ 354b0a623aaSMatthew G. Knepley ierr = PetscSectionGetChart(leafRankSection, &pStart, &pEnd);CHKERRQ(ierr); 355b0a623aaSMatthew G. Knepley ierr = ISGetIndices(leafRanks, &nranks);CHKERRQ(ierr); 356b0a623aaSMatthew G. Knepley for (p = pStart; p < pEnd; ++p) { 357b0a623aaSMatthew G. Knepley PetscInt ndof, noff, n; 358b0a623aaSMatthew G. Knepley 359b0a623aaSMatthew G. Knepley ierr = PetscSectionGetDof(leafRankSection, p, &ndof);CHKERRQ(ierr); 360b0a623aaSMatthew G. Knepley ierr = PetscSectionGetOffset(leafRankSection, p, &noff);CHKERRQ(ierr); 361302440fdSBarry Smith for (n = 0; n < ndof; ++n) {ierr = PetscBTSet(neighbors, nranks[noff+n]);CHKERRQ(ierr);} 362b0a623aaSMatthew G. Knepley } 363b0a623aaSMatthew G. Knepley ierr = ISRestoreIndices(leafRanks, &nranks);CHKERRQ(ierr); 364b0a623aaSMatthew G. Knepley /* Compute leaf-to-root process connectivity */ 365b0a623aaSMatthew G. Knepley for (l = 0; l < numLeaves; ++l) {PetscBTSet(neighbors, remotePoints[l].rank);} 366b0a623aaSMatthew G. Knepley /* Calculate edges */ 367b0a623aaSMatthew G. Knepley PetscBTClear(neighbors, rank); 3689852e123SBarry Smith for(proc = 0, numNeighbors = 0; proc < size; ++proc) {if (PetscBTLookup(neighbors, proc)) ++numNeighbors;} 369b0a623aaSMatthew G. Knepley ierr = PetscMalloc1(numNeighbors, &ranksNew);CHKERRQ(ierr); 370b0a623aaSMatthew G. Knepley ierr = PetscMalloc1(numNeighbors, &localPointsNew);CHKERRQ(ierr); 371b0a623aaSMatthew G. Knepley ierr = PetscMalloc1(numNeighbors, &remotePointsNew);CHKERRQ(ierr); 3729852e123SBarry Smith for(proc = 0, n = 0; proc < size; ++proc) { 373b0a623aaSMatthew G. Knepley if (PetscBTLookup(neighbors, proc)) { 374b0a623aaSMatthew G. Knepley ranksNew[n] = proc; 375b0a623aaSMatthew G. Knepley localPointsNew[n] = proc; 376b0a623aaSMatthew G. Knepley remotePointsNew[n].index = rank; 377b0a623aaSMatthew G. Knepley remotePointsNew[n].rank = proc; 378b0a623aaSMatthew G. Knepley ++n; 379b0a623aaSMatthew G. Knepley } 380b0a623aaSMatthew G. Knepley } 381b0a623aaSMatthew G. Knepley ierr = PetscBTDestroy(&neighbors);CHKERRQ(ierr); 382b0a623aaSMatthew G. Knepley if (processRanks) {ierr = ISCreateGeneral(PetscObjectComm((PetscObject)dm), numNeighbors, ranksNew, PETSC_OWN_POINTER, processRanks);CHKERRQ(ierr);} 383b0a623aaSMatthew G. Knepley else {ierr = PetscFree(ranksNew);CHKERRQ(ierr);} 384b0a623aaSMatthew G. Knepley if (sfProcess) { 385b0a623aaSMatthew G. Knepley ierr = PetscSFCreate(PetscObjectComm((PetscObject)dm), sfProcess);CHKERRQ(ierr); 386b0a623aaSMatthew G. Knepley ierr = PetscObjectSetName((PetscObject) *sfProcess, "Two-Sided Process SF");CHKERRQ(ierr); 387b0a623aaSMatthew G. Knepley ierr = PetscSFSetFromOptions(*sfProcess);CHKERRQ(ierr); 3889852e123SBarry Smith ierr = PetscSFSetGraph(*sfProcess, size, numNeighbors, localPointsNew, PETSC_OWN_POINTER, remotePointsNew, PETSC_OWN_POINTER);CHKERRQ(ierr); 389b0a623aaSMatthew G. Knepley } 390b0a623aaSMatthew G. Knepley PetscFunctionReturn(0); 391b0a623aaSMatthew G. Knepley } 392b0a623aaSMatthew G. Knepley 393b0a623aaSMatthew G. Knepley /*@ 394b0a623aaSMatthew G. Knepley DMPlexDistributeOwnership - Compute owner information for shared points. This basically gets two-sided for an SF. 395b0a623aaSMatthew G. Knepley 396b0a623aaSMatthew G. Knepley Collective on DM 397b0a623aaSMatthew G. Knepley 398b0a623aaSMatthew G. Knepley Input Parameter: 399b0a623aaSMatthew G. Knepley . dm - The DM 400b0a623aaSMatthew G. Knepley 401b0a623aaSMatthew G. Knepley Output Parameters: 402b0a623aaSMatthew G. Knepley + rootSection - The number of leaves for a given root point 403b0a623aaSMatthew G. Knepley . rootrank - The rank of each edge into the root point 404b0a623aaSMatthew G. Knepley . leafSection - The number of processes sharing a given leaf point 405b0a623aaSMatthew G. Knepley - leafrank - The rank of each process sharing a leaf point 406b0a623aaSMatthew G. Knepley 407b0a623aaSMatthew G. Knepley Level: developer 408b0a623aaSMatthew G. Knepley 409b0a623aaSMatthew G. Knepley .seealso: DMPlexCreateOverlap() 410b0a623aaSMatthew G. Knepley @*/ 411b0a623aaSMatthew G. Knepley PetscErrorCode DMPlexDistributeOwnership(DM dm, PetscSection rootSection, IS *rootrank, PetscSection leafSection, IS *leafrank) 412b0a623aaSMatthew G. Knepley { 413b0a623aaSMatthew G. Knepley MPI_Comm comm; 414b0a623aaSMatthew G. Knepley PetscSF sfPoint; 415b0a623aaSMatthew G. Knepley const PetscInt *rootdegree; 416b0a623aaSMatthew G. Knepley PetscInt *myrank, *remoterank; 417b0a623aaSMatthew G. Knepley PetscInt pStart, pEnd, p, nedges; 418b0a623aaSMatthew G. Knepley PetscMPIInt rank; 419b0a623aaSMatthew G. Knepley PetscErrorCode ierr; 420b0a623aaSMatthew G. Knepley 421b0a623aaSMatthew G. Knepley PetscFunctionBegin; 422b0a623aaSMatthew G. Knepley ierr = PetscObjectGetComm((PetscObject) dm, &comm);CHKERRQ(ierr); 423b0a623aaSMatthew G. Knepley ierr = MPI_Comm_rank(comm, &rank);CHKERRQ(ierr); 424b0a623aaSMatthew G. Knepley ierr = DMPlexGetChart(dm, &pStart, &pEnd);CHKERRQ(ierr); 425b0a623aaSMatthew G. Knepley ierr = DMGetPointSF(dm, &sfPoint);CHKERRQ(ierr); 426b0a623aaSMatthew G. Knepley /* Compute number of leaves for each root */ 427b0a623aaSMatthew G. Knepley ierr = PetscObjectSetName((PetscObject) rootSection, "Root Section");CHKERRQ(ierr); 428b0a623aaSMatthew G. Knepley ierr = PetscSectionSetChart(rootSection, pStart, pEnd);CHKERRQ(ierr); 429b0a623aaSMatthew G. Knepley ierr = PetscSFComputeDegreeBegin(sfPoint, &rootdegree);CHKERRQ(ierr); 430b0a623aaSMatthew G. Knepley ierr = PetscSFComputeDegreeEnd(sfPoint, &rootdegree);CHKERRQ(ierr); 431b0a623aaSMatthew G. Knepley for (p = pStart; p < pEnd; ++p) {ierr = PetscSectionSetDof(rootSection, p, rootdegree[p-pStart]);CHKERRQ(ierr);} 432b0a623aaSMatthew G. Knepley ierr = PetscSectionSetUp(rootSection);CHKERRQ(ierr); 433b0a623aaSMatthew G. Knepley /* Gather rank of each leaf to root */ 434b0a623aaSMatthew G. Knepley ierr = PetscSectionGetStorageSize(rootSection, &nedges);CHKERRQ(ierr); 435b0a623aaSMatthew G. Knepley ierr = PetscMalloc1(pEnd-pStart, &myrank);CHKERRQ(ierr); 436b0a623aaSMatthew G. Knepley ierr = PetscMalloc1(nedges, &remoterank);CHKERRQ(ierr); 437b0a623aaSMatthew G. Knepley for (p = 0; p < pEnd-pStart; ++p) myrank[p] = rank; 438b0a623aaSMatthew G. Knepley ierr = PetscSFGatherBegin(sfPoint, MPIU_INT, myrank, remoterank);CHKERRQ(ierr); 439b0a623aaSMatthew G. Knepley ierr = PetscSFGatherEnd(sfPoint, MPIU_INT, myrank, remoterank);CHKERRQ(ierr); 440b0a623aaSMatthew G. Knepley ierr = PetscFree(myrank);CHKERRQ(ierr); 441b0a623aaSMatthew G. Knepley ierr = ISCreateGeneral(comm, nedges, remoterank, PETSC_OWN_POINTER, rootrank);CHKERRQ(ierr); 442b0a623aaSMatthew G. Knepley /* Distribute remote ranks to leaves */ 443b0a623aaSMatthew G. Knepley ierr = PetscObjectSetName((PetscObject) leafSection, "Leaf Section");CHKERRQ(ierr); 444b0a623aaSMatthew G. Knepley ierr = DMPlexDistributeFieldIS(dm, sfPoint, rootSection, *rootrank, leafSection, leafrank);CHKERRQ(ierr); 445b0a623aaSMatthew G. Knepley PetscFunctionReturn(0); 446b0a623aaSMatthew G. Knepley } 447b0a623aaSMatthew G. Knepley 448278397a0SMatthew G. Knepley /*@C 449b0a623aaSMatthew G. Knepley DMPlexCreateOverlap - Compute owner information for shared points. This basically gets two-sided for an SF. 450b0a623aaSMatthew G. Knepley 451b0a623aaSMatthew G. Knepley Collective on DM 452b0a623aaSMatthew G. Knepley 453b0a623aaSMatthew G. Knepley Input Parameters: 454b0a623aaSMatthew G. Knepley + dm - The DM 45524d039d7SMichael Lange . levels - Number of overlap levels 456b0a623aaSMatthew G. Knepley . rootSection - The number of leaves for a given root point 457b0a623aaSMatthew G. Knepley . rootrank - The rank of each edge into the root point 458b0a623aaSMatthew G. Knepley . leafSection - The number of processes sharing a given leaf point 459b0a623aaSMatthew G. Knepley - leafrank - The rank of each process sharing a leaf point 460b0a623aaSMatthew G. Knepley 461b0a623aaSMatthew G. Knepley Output Parameters: 462a9f1d5b2SMichael Lange + ovLabel - DMLabel containing remote overlap contributions as point/rank pairings 463b0a623aaSMatthew G. Knepley 464b0a623aaSMatthew G. Knepley Level: developer 465b0a623aaSMatthew G. Knepley 4661fd9873aSMichael Lange .seealso: DMPlexDistributeOwnership(), DMPlexDistribute() 467b0a623aaSMatthew G. Knepley @*/ 468a9f1d5b2SMichael Lange PetscErrorCode DMPlexCreateOverlap(DM dm, PetscInt levels, PetscSection rootSection, IS rootrank, PetscSection leafSection, IS leafrank, DMLabel *ovLabel) 469b0a623aaSMatthew G. Knepley { 470e540f424SMichael Lange MPI_Comm comm; 471b0a623aaSMatthew G. Knepley DMLabel ovAdjByRank; /* A DMLabel containing all points adjacent to shared points, separated by rank (value in label) */ 472874ddda9SLisandro Dalcin PetscSF sfPoint; 473b0a623aaSMatthew G. Knepley const PetscSFNode *remote; 474b0a623aaSMatthew G. Knepley const PetscInt *local; 4751fd9873aSMichael Lange const PetscInt *nrank, *rrank; 476b0a623aaSMatthew G. Knepley PetscInt *adj = NULL; 4771fd9873aSMichael Lange PetscInt pStart, pEnd, p, sStart, sEnd, nleaves, l; 4789852e123SBarry Smith PetscMPIInt rank, size; 47931bc6364SLisandro Dalcin PetscBool flg; 480b0a623aaSMatthew G. Knepley PetscErrorCode ierr; 481b0a623aaSMatthew G. Knepley 482b0a623aaSMatthew G. Knepley PetscFunctionBegin; 483e540f424SMichael Lange ierr = PetscObjectGetComm((PetscObject) dm, &comm);CHKERRQ(ierr); 4849852e123SBarry Smith ierr = MPI_Comm_size(comm, &size);CHKERRQ(ierr); 485e540f424SMichael Lange ierr = MPI_Comm_rank(comm, &rank);CHKERRQ(ierr); 486b0a623aaSMatthew G. Knepley ierr = DMGetPointSF(dm, &sfPoint);CHKERRQ(ierr); 487b0a623aaSMatthew G. Knepley ierr = DMPlexGetChart(dm, &pStart, &pEnd);CHKERRQ(ierr); 488b0a623aaSMatthew G. Knepley ierr = PetscSectionGetChart(leafSection, &sStart, &sEnd);CHKERRQ(ierr); 489b0a623aaSMatthew G. Knepley ierr = PetscSFGetGraph(sfPoint, NULL, &nleaves, &local, &remote);CHKERRQ(ierr); 490d67d17b1SMatthew G. Knepley ierr = DMLabelCreate(PETSC_COMM_SELF, "Overlap adjacency", &ovAdjByRank);CHKERRQ(ierr); 491b0a623aaSMatthew G. Knepley /* Handle leaves: shared with the root point */ 492b0a623aaSMatthew G. Knepley for (l = 0; l < nleaves; ++l) { 493b0a623aaSMatthew G. Knepley PetscInt adjSize = PETSC_DETERMINE, a; 494b0a623aaSMatthew G. Knepley 495df20756eSMatthew G. Knepley ierr = DMPlexGetAdjacency(dm, local ? local[l] : l, &adjSize, &adj);CHKERRQ(ierr); 496b0a623aaSMatthew G. Knepley for (a = 0; a < adjSize; ++a) {ierr = DMLabelSetValue(ovAdjByRank, adj[a], remote[l].rank);CHKERRQ(ierr);} 497b0a623aaSMatthew G. Knepley } 498b0a623aaSMatthew G. Knepley ierr = ISGetIndices(rootrank, &rrank);CHKERRQ(ierr); 499b0a623aaSMatthew G. Knepley ierr = ISGetIndices(leafrank, &nrank);CHKERRQ(ierr); 500b0a623aaSMatthew G. Knepley /* Handle roots */ 501b0a623aaSMatthew G. Knepley for (p = pStart; p < pEnd; ++p) { 502b0a623aaSMatthew G. Knepley PetscInt adjSize = PETSC_DETERMINE, neighbors = 0, noff, n, a; 503b0a623aaSMatthew G. Knepley 504b0a623aaSMatthew G. Knepley if ((p >= sStart) && (p < sEnd)) { 505b0a623aaSMatthew G. Knepley /* Some leaves share a root with other leaves on different processes */ 506b0a623aaSMatthew G. Knepley ierr = PetscSectionGetDof(leafSection, p, &neighbors);CHKERRQ(ierr); 507b0a623aaSMatthew G. Knepley if (neighbors) { 508b0a623aaSMatthew G. Knepley ierr = PetscSectionGetOffset(leafSection, p, &noff);CHKERRQ(ierr); 509b0a623aaSMatthew G. Knepley ierr = DMPlexGetAdjacency(dm, p, &adjSize, &adj);CHKERRQ(ierr); 510b0a623aaSMatthew G. Knepley for (n = 0; n < neighbors; ++n) { 511b0a623aaSMatthew G. Knepley const PetscInt remoteRank = nrank[noff+n]; 512b0a623aaSMatthew G. Knepley 513b0a623aaSMatthew G. Knepley if (remoteRank == rank) continue; 514b0a623aaSMatthew G. Knepley for (a = 0; a < adjSize; ++a) {ierr = DMLabelSetValue(ovAdjByRank, adj[a], remoteRank);CHKERRQ(ierr);} 515b0a623aaSMatthew G. Knepley } 516b0a623aaSMatthew G. Knepley } 517b0a623aaSMatthew G. Knepley } 518b0a623aaSMatthew G. Knepley /* Roots are shared with leaves */ 519b0a623aaSMatthew G. Knepley ierr = PetscSectionGetDof(rootSection, p, &neighbors);CHKERRQ(ierr); 520b0a623aaSMatthew G. Knepley if (!neighbors) continue; 521b0a623aaSMatthew G. Knepley ierr = PetscSectionGetOffset(rootSection, p, &noff);CHKERRQ(ierr); 522b0a623aaSMatthew G. Knepley ierr = DMPlexGetAdjacency(dm, p, &adjSize, &adj);CHKERRQ(ierr); 523b0a623aaSMatthew G. Knepley for (n = 0; n < neighbors; ++n) { 524b0a623aaSMatthew G. Knepley const PetscInt remoteRank = rrank[noff+n]; 525b0a623aaSMatthew G. Knepley 526b0a623aaSMatthew G. Knepley if (remoteRank == rank) continue; 527b0a623aaSMatthew G. Knepley for (a = 0; a < adjSize; ++a) {ierr = DMLabelSetValue(ovAdjByRank, adj[a], remoteRank);CHKERRQ(ierr);} 528b0a623aaSMatthew G. Knepley } 529b0a623aaSMatthew G. Knepley } 530b0a623aaSMatthew G. Knepley ierr = PetscFree(adj);CHKERRQ(ierr); 531b0a623aaSMatthew G. Knepley ierr = ISRestoreIndices(rootrank, &rrank);CHKERRQ(ierr); 532b0a623aaSMatthew G. Knepley ierr = ISRestoreIndices(leafrank, &nrank);CHKERRQ(ierr); 53324d039d7SMichael Lange /* Add additional overlap levels */ 534be200f8dSMichael Lange for (l = 1; l < levels; l++) { 535be200f8dSMichael Lange /* Propagate point donations over SF to capture remote connections */ 536be200f8dSMichael Lange ierr = DMPlexPartitionLabelPropagate(dm, ovAdjByRank);CHKERRQ(ierr); 537be200f8dSMichael Lange /* Add next level of point donations to the label */ 538be200f8dSMichael Lange ierr = DMPlexPartitionLabelAdjacency(dm, ovAdjByRank);CHKERRQ(ierr); 539be200f8dSMichael Lange } 54026a7d390SMatthew G. Knepley /* We require the closure in the overlap */ 5415abbe4feSMichael Lange ierr = DMPlexPartitionLabelClosure(dm, ovAdjByRank);CHKERRQ(ierr); 542c5929fdfSBarry Smith ierr = PetscOptionsHasName(((PetscObject) dm)->options,((PetscObject) dm)->prefix, "-overlap_view", &flg);CHKERRQ(ierr); 543e540f424SMichael Lange if (flg) { 544825f8a23SLisandro Dalcin PetscViewer viewer; 545825f8a23SLisandro Dalcin ierr = PetscViewerASCIIGetStdout(PetscObjectComm((PetscObject)dm), &viewer);CHKERRQ(ierr); 546825f8a23SLisandro Dalcin ierr = DMLabelView(ovAdjByRank, viewer);CHKERRQ(ierr); 547b0a623aaSMatthew G. Knepley } 548874ddda9SLisandro Dalcin /* Invert sender to receiver label */ 549d67d17b1SMatthew G. Knepley ierr = DMLabelCreate(PETSC_COMM_SELF, "Overlap label", ovLabel);CHKERRQ(ierr); 550874ddda9SLisandro Dalcin ierr = DMPlexPartitionLabelInvert(dm, ovAdjByRank, NULL, *ovLabel);CHKERRQ(ierr); 551a9f1d5b2SMichael Lange /* Add owned points, except for shared local points */ 552a9f1d5b2SMichael Lange for (p = pStart; p < pEnd; ++p) {ierr = DMLabelSetValue(*ovLabel, p, rank);CHKERRQ(ierr);} 553e540f424SMichael Lange for (l = 0; l < nleaves; ++l) { 554a9f1d5b2SMichael Lange ierr = DMLabelClearValue(*ovLabel, local[l], rank);CHKERRQ(ierr); 555a9f1d5b2SMichael Lange ierr = DMLabelSetValue(*ovLabel, remote[l].index, remote[l].rank);CHKERRQ(ierr); 556e540f424SMichael Lange } 557e540f424SMichael Lange /* Clean up */ 5581fd9873aSMichael Lange ierr = DMLabelDestroy(&ovAdjByRank);CHKERRQ(ierr); 559b0a623aaSMatthew G. Knepley PetscFunctionReturn(0); 560b0a623aaSMatthew G. Knepley } 56170034214SMatthew G. Knepley 56224cc2ca5SMatthew G. Knepley /*@C 56324cc2ca5SMatthew G. Knepley DMPlexCreateOverlapMigrationSF - Create an SF describing the new mesh distribution to make the overlap described by the input SF 56424cc2ca5SMatthew G. Knepley 56524cc2ca5SMatthew G. Knepley Collective on DM 56624cc2ca5SMatthew G. Knepley 56724cc2ca5SMatthew G. Knepley Input Parameters: 56824cc2ca5SMatthew G. Knepley + dm - The DM 56924cc2ca5SMatthew G. Knepley - overlapSF - The SF mapping ghost points in overlap to owner points on other processes 57024cc2ca5SMatthew G. Knepley 57124cc2ca5SMatthew G. Knepley Output Parameters: 57224cc2ca5SMatthew G. Knepley + migrationSF - An SF that maps original points in old locations to points in new locations 57324cc2ca5SMatthew G. Knepley 57424cc2ca5SMatthew G. Knepley Level: developer 57524cc2ca5SMatthew G. Knepley 57624cc2ca5SMatthew G. Knepley .seealso: DMPlexCreateOverlap(), DMPlexDistribute() 57724cc2ca5SMatthew G. Knepley @*/ 57846f9b1c3SMichael Lange PetscErrorCode DMPlexCreateOverlapMigrationSF(DM dm, PetscSF overlapSF, PetscSF *migrationSF) 57946f9b1c3SMichael Lange { 58046f9b1c3SMichael Lange MPI_Comm comm; 5819852e123SBarry Smith PetscMPIInt rank, size; 58246f9b1c3SMichael Lange PetscInt d, dim, p, pStart, pEnd, nroots, nleaves, newLeaves, point, numSharedPoints; 58346f9b1c3SMichael Lange PetscInt *pointDepths, *remoteDepths, *ilocal; 58446f9b1c3SMichael Lange PetscInt *depthRecv, *depthShift, *depthIdx; 58546f9b1c3SMichael Lange PetscSFNode *iremote; 58646f9b1c3SMichael Lange PetscSF pointSF; 58746f9b1c3SMichael Lange const PetscInt *sharedLocal; 58846f9b1c3SMichael Lange const PetscSFNode *overlapRemote, *sharedRemote; 58946f9b1c3SMichael Lange PetscErrorCode ierr; 59046f9b1c3SMichael Lange 59146f9b1c3SMichael Lange PetscFunctionBegin; 59246f9b1c3SMichael Lange PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 59346f9b1c3SMichael Lange ierr = PetscObjectGetComm((PetscObject)dm, &comm);CHKERRQ(ierr); 59446f9b1c3SMichael Lange ierr = MPI_Comm_rank(comm, &rank);CHKERRQ(ierr); 5959852e123SBarry Smith ierr = MPI_Comm_size(comm, &size);CHKERRQ(ierr); 59646f9b1c3SMichael Lange ierr = DMGetDimension(dm, &dim);CHKERRQ(ierr); 59746f9b1c3SMichael Lange 59846f9b1c3SMichael Lange /* Before building the migration SF we need to know the new stratum offsets */ 59946f9b1c3SMichael Lange ierr = PetscSFGetGraph(overlapSF, &nroots, &nleaves, NULL, &overlapRemote);CHKERRQ(ierr); 60046f9b1c3SMichael Lange ierr = PetscMalloc2(nroots, &pointDepths, nleaves, &remoteDepths);CHKERRQ(ierr); 60146f9b1c3SMichael Lange for (d=0; d<dim+1; d++) { 60246f9b1c3SMichael Lange ierr = DMPlexGetDepthStratum(dm, d, &pStart, &pEnd);CHKERRQ(ierr); 60346f9b1c3SMichael Lange for (p=pStart; p<pEnd; p++) pointDepths[p] = d; 60446f9b1c3SMichael Lange } 60546f9b1c3SMichael Lange for (p=0; p<nleaves; p++) remoteDepths[p] = -1; 60646f9b1c3SMichael Lange ierr = PetscSFBcastBegin(overlapSF, MPIU_INT, pointDepths, remoteDepths);CHKERRQ(ierr); 60746f9b1c3SMichael Lange ierr = PetscSFBcastEnd(overlapSF, MPIU_INT, pointDepths, remoteDepths);CHKERRQ(ierr); 60846f9b1c3SMichael Lange 60946f9b1c3SMichael Lange /* Count recevied points in each stratum and compute the internal strata shift */ 61046f9b1c3SMichael Lange ierr = PetscMalloc3(dim+1, &depthRecv, dim+1, &depthShift, dim+1, &depthIdx);CHKERRQ(ierr); 61146f9b1c3SMichael Lange for (d=0; d<dim+1; d++) depthRecv[d]=0; 61246f9b1c3SMichael Lange for (p=0; p<nleaves; p++) depthRecv[remoteDepths[p]]++; 61346f9b1c3SMichael Lange depthShift[dim] = 0; 61446f9b1c3SMichael Lange for (d=0; d<dim; d++) depthShift[d] = depthRecv[dim]; 61546f9b1c3SMichael Lange for (d=1; d<dim; d++) depthShift[d] += depthRecv[0]; 61646f9b1c3SMichael Lange for (d=dim-2; d>0; d--) depthShift[d] += depthRecv[d+1]; 61746f9b1c3SMichael Lange for (d=0; d<dim+1; d++) { 61846f9b1c3SMichael Lange ierr = DMPlexGetDepthStratum(dm, d, &pStart, &pEnd);CHKERRQ(ierr); 61946f9b1c3SMichael Lange depthIdx[d] = pStart + depthShift[d]; 62046f9b1c3SMichael Lange } 62146f9b1c3SMichael Lange 62246f9b1c3SMichael Lange /* Form the overlap SF build an SF that describes the full overlap migration SF */ 62346f9b1c3SMichael Lange ierr = DMPlexGetChart(dm, &pStart, &pEnd);CHKERRQ(ierr); 62446f9b1c3SMichael Lange newLeaves = pEnd - pStart + nleaves; 62509b7985cSMatthew G. Knepley ierr = PetscMalloc1(newLeaves, &ilocal);CHKERRQ(ierr); 62609b7985cSMatthew G. Knepley ierr = PetscMalloc1(newLeaves, &iremote);CHKERRQ(ierr); 62746f9b1c3SMichael Lange /* First map local points to themselves */ 62846f9b1c3SMichael Lange for (d=0; d<dim+1; d++) { 62946f9b1c3SMichael Lange ierr = DMPlexGetDepthStratum(dm, d, &pStart, &pEnd);CHKERRQ(ierr); 63046f9b1c3SMichael Lange for (p=pStart; p<pEnd; p++) { 63146f9b1c3SMichael Lange point = p + depthShift[d]; 63246f9b1c3SMichael Lange ilocal[point] = point; 63346f9b1c3SMichael Lange iremote[point].index = p; 63446f9b1c3SMichael Lange iremote[point].rank = rank; 63546f9b1c3SMichael Lange depthIdx[d]++; 63646f9b1c3SMichael Lange } 63746f9b1c3SMichael Lange } 63846f9b1c3SMichael Lange 63946f9b1c3SMichael Lange /* Add in the remote roots for currently shared points */ 64046f9b1c3SMichael Lange ierr = DMGetPointSF(dm, &pointSF);CHKERRQ(ierr); 64146f9b1c3SMichael Lange ierr = PetscSFGetGraph(pointSF, NULL, &numSharedPoints, &sharedLocal, &sharedRemote);CHKERRQ(ierr); 64246f9b1c3SMichael Lange for (d=0; d<dim+1; d++) { 64346f9b1c3SMichael Lange ierr = DMPlexGetDepthStratum(dm, d, &pStart, &pEnd);CHKERRQ(ierr); 64446f9b1c3SMichael Lange for (p=0; p<numSharedPoints; p++) { 64546f9b1c3SMichael Lange if (pStart <= sharedLocal[p] && sharedLocal[p] < pEnd) { 64646f9b1c3SMichael Lange point = sharedLocal[p] + depthShift[d]; 64746f9b1c3SMichael Lange iremote[point].index = sharedRemote[p].index; 64846f9b1c3SMichael Lange iremote[point].rank = sharedRemote[p].rank; 64946f9b1c3SMichael Lange } 65046f9b1c3SMichael Lange } 65146f9b1c3SMichael Lange } 65246f9b1c3SMichael Lange 65346f9b1c3SMichael Lange /* Now add the incoming overlap points */ 65446f9b1c3SMichael Lange for (p=0; p<nleaves; p++) { 65546f9b1c3SMichael Lange point = depthIdx[remoteDepths[p]]; 65646f9b1c3SMichael Lange ilocal[point] = point; 65746f9b1c3SMichael Lange iremote[point].index = overlapRemote[p].index; 65846f9b1c3SMichael Lange iremote[point].rank = overlapRemote[p].rank; 65946f9b1c3SMichael Lange depthIdx[remoteDepths[p]]++; 66046f9b1c3SMichael Lange } 66115fff7beSMatthew G. Knepley ierr = PetscFree2(pointDepths,remoteDepths);CHKERRQ(ierr); 66246f9b1c3SMichael Lange 66346f9b1c3SMichael Lange ierr = PetscSFCreate(comm, migrationSF);CHKERRQ(ierr); 66446f9b1c3SMichael Lange ierr = PetscObjectSetName((PetscObject) *migrationSF, "Overlap Migration SF");CHKERRQ(ierr); 66546f9b1c3SMichael Lange ierr = PetscSFSetFromOptions(*migrationSF);CHKERRQ(ierr); 66646f9b1c3SMichael Lange ierr = DMPlexGetChart(dm, &pStart, &pEnd);CHKERRQ(ierr); 66746f9b1c3SMichael Lange ierr = PetscSFSetGraph(*migrationSF, pEnd-pStart, newLeaves, ilocal, PETSC_OWN_POINTER, iremote, PETSC_OWN_POINTER);CHKERRQ(ierr); 66846f9b1c3SMichael Lange 66946f9b1c3SMichael Lange ierr = PetscFree3(depthRecv, depthShift, depthIdx);CHKERRQ(ierr); 67070034214SMatthew G. Knepley PetscFunctionReturn(0); 67170034214SMatthew G. Knepley } 67270034214SMatthew G. Knepley 673a9f1d5b2SMichael Lange /*@ 674f0e73a3dSToby Isaac DMPlexStratifyMigrationSF - Rearrange the leaves of a migration sf for stratification. 675a9f1d5b2SMichael Lange 676a9f1d5b2SMichael Lange Input Parameter: 677a9f1d5b2SMichael Lange + dm - The DM 678a9f1d5b2SMichael Lange - sf - A star forest with non-ordered leaves, usually defining a DM point migration 679a9f1d5b2SMichael Lange 680a9f1d5b2SMichael Lange Output Parameter: 681a9f1d5b2SMichael Lange . migrationSF - A star forest with added leaf indirection that ensures the resulting DM is stratified 682a9f1d5b2SMichael Lange 683a9f1d5b2SMichael Lange Level: developer 684a9f1d5b2SMichael Lange 685a9f1d5b2SMichael Lange .seealso: DMPlexPartitionLabelCreateSF(), DMPlexDistribute(), DMPlexDistributeOverlap() 686a9f1d5b2SMichael Lange @*/ 687a9f1d5b2SMichael Lange PetscErrorCode DMPlexStratifyMigrationSF(DM dm, PetscSF sf, PetscSF *migrationSF) 688a9f1d5b2SMichael Lange { 689a9f1d5b2SMichael Lange MPI_Comm comm; 6909852e123SBarry Smith PetscMPIInt rank, size; 6917fab53ddSMatthew G. Knepley PetscInt d, ldepth, depth, p, pStart, pEnd, nroots, nleaves; 692a9f1d5b2SMichael Lange PetscInt *pointDepths, *remoteDepths, *ilocal; 693a9f1d5b2SMichael Lange PetscInt *depthRecv, *depthShift, *depthIdx; 694f0e73a3dSToby Isaac PetscInt hybEnd[4]; 695a9f1d5b2SMichael Lange const PetscSFNode *iremote; 696a9f1d5b2SMichael Lange PetscErrorCode ierr; 697a9f1d5b2SMichael Lange 698a9f1d5b2SMichael Lange PetscFunctionBegin; 699a9f1d5b2SMichael Lange PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 700a9f1d5b2SMichael Lange ierr = PetscObjectGetComm((PetscObject) dm, &comm);CHKERRQ(ierr); 701a9f1d5b2SMichael Lange ierr = MPI_Comm_rank(comm, &rank);CHKERRQ(ierr); 7029852e123SBarry Smith ierr = MPI_Comm_size(comm, &size);CHKERRQ(ierr); 7037fab53ddSMatthew G. Knepley ierr = DMPlexGetDepth(dm, &ldepth);CHKERRQ(ierr); 704b2566f29SBarry Smith ierr = MPIU_Allreduce(&ldepth, &depth, 1, MPIU_INT, MPI_MAX, comm);CHKERRQ(ierr); 7057fab53ddSMatthew G. Knepley if ((ldepth >= 0) && (depth != ldepth)) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Inconsistent Plex depth %d != %d", ldepth, depth); 70630b0ce1bSStefano Zampini ierr = PetscLogEventBegin(DMPLEX_PartStratSF,dm,0,0,0);CHKERRQ(ierr); 707a9f1d5b2SMichael Lange 708a9f1d5b2SMichael Lange /* Before building the migration SF we need to know the new stratum offsets */ 709a9f1d5b2SMichael Lange ierr = PetscSFGetGraph(sf, &nroots, &nleaves, NULL, &iremote);CHKERRQ(ierr); 710a9f1d5b2SMichael Lange ierr = PetscMalloc2(nroots, &pointDepths, nleaves, &remoteDepths);CHKERRQ(ierr); 7115510c841SStefano Zampini ierr = DMPlexGetHybridBounds(dm,&hybEnd[depth],&hybEnd[PetscMax(depth-1,0)],&hybEnd[1],&hybEnd[0]);CHKERRQ(ierr); 7127fab53ddSMatthew G. Knepley for (d = 0; d < depth+1; ++d) { 713a9f1d5b2SMichael Lange ierr = DMPlexGetDepthStratum(dm, d, &pStart, &pEnd);CHKERRQ(ierr); 714f0e73a3dSToby Isaac for (p = pStart; p < pEnd; ++p) { 715f0e73a3dSToby Isaac if (hybEnd[d] >= 0 && p >= hybEnd[d]) { /* put in a separate value for hybrid points */ 716f0e73a3dSToby Isaac pointDepths[p] = 2 * d; 717f0e73a3dSToby Isaac } else { 718f0e73a3dSToby Isaac pointDepths[p] = 2 * d + 1; 719f0e73a3dSToby Isaac } 720f0e73a3dSToby Isaac } 721a9f1d5b2SMichael Lange } 7227fab53ddSMatthew G. Knepley for (p = 0; p < nleaves; ++p) remoteDepths[p] = -1; 723a9f1d5b2SMichael Lange ierr = PetscSFBcastBegin(sf, MPIU_INT, pointDepths, remoteDepths);CHKERRQ(ierr); 724a9f1d5b2SMichael Lange ierr = PetscSFBcastEnd(sf, MPIU_INT, pointDepths, remoteDepths);CHKERRQ(ierr); 725bba01988SBarry Smith /* Count received points in each stratum and compute the internal strata shift */ 726f0e73a3dSToby Isaac ierr = PetscMalloc3(2*(depth+1), &depthRecv, 2*(depth+1), &depthShift, 2*(depth+1), &depthIdx);CHKERRQ(ierr); 727f0e73a3dSToby Isaac for (d = 0; d < 2*(depth+1); ++d) depthRecv[d] = 0; 7287fab53ddSMatthew G. Knepley for (p = 0; p < nleaves; ++p) depthRecv[remoteDepths[p]]++; 729f0e73a3dSToby Isaac depthShift[2*depth+1] = 0; 730f0e73a3dSToby Isaac for (d = 0; d < 2*depth+1; ++d) depthShift[d] = depthRecv[2 * depth + 1]; 731f0e73a3dSToby Isaac for (d = 0; d < 2*depth; ++d) depthShift[d] += depthRecv[2 * depth]; 732f0e73a3dSToby Isaac depthShift[0] += depthRecv[1]; 733f0e73a3dSToby Isaac for (d = 2; d < 2*depth; ++d) depthShift[d] += depthRecv[1]; 734f0e73a3dSToby Isaac for (d = 2; d < 2*depth; ++d) depthShift[d] += depthRecv[0]; 735f0e73a3dSToby Isaac for (d = 2 * depth-1; d > 2; --d) { 736f0e73a3dSToby Isaac PetscInt e; 737f0e73a3dSToby Isaac 738f0e73a3dSToby Isaac for (e = d -1; e > 1; --e) depthShift[e] += depthRecv[d]; 739f0e73a3dSToby Isaac } 740f0e73a3dSToby Isaac for (d = 0; d < 2*(depth+1); ++d) {depthIdx[d] = 0;} 741a9f1d5b2SMichael Lange /* Derive a new local permutation based on stratified indices */ 742a9f1d5b2SMichael Lange ierr = PetscMalloc1(nleaves, &ilocal);CHKERRQ(ierr); 7437fab53ddSMatthew G. Knepley for (p = 0; p < nleaves; ++p) { 7447fab53ddSMatthew G. Knepley const PetscInt dep = remoteDepths[p]; 7457fab53ddSMatthew G. Knepley 7467fab53ddSMatthew G. Knepley ilocal[p] = depthShift[dep] + depthIdx[dep]; 7477fab53ddSMatthew G. Knepley depthIdx[dep]++; 748a9f1d5b2SMichael Lange } 749a9f1d5b2SMichael Lange ierr = PetscSFCreate(comm, migrationSF);CHKERRQ(ierr); 750a9f1d5b2SMichael Lange ierr = PetscObjectSetName((PetscObject) *migrationSF, "Migration SF");CHKERRQ(ierr); 751a9f1d5b2SMichael Lange ierr = PetscSFSetGraph(*migrationSF, nroots, nleaves, ilocal, PETSC_OWN_POINTER, iremote, PETSC_COPY_VALUES);CHKERRQ(ierr); 752a9f1d5b2SMichael Lange ierr = PetscFree2(pointDepths,remoteDepths);CHKERRQ(ierr); 753a9f1d5b2SMichael Lange ierr = PetscFree3(depthRecv, depthShift, depthIdx);CHKERRQ(ierr); 75430b0ce1bSStefano Zampini ierr = PetscLogEventEnd(DMPLEX_PartStratSF,dm,0,0,0);CHKERRQ(ierr); 755a9f1d5b2SMichael Lange PetscFunctionReturn(0); 756a9f1d5b2SMichael Lange } 757a9f1d5b2SMichael Lange 75870034214SMatthew G. Knepley /*@ 75970034214SMatthew G. Knepley DMPlexDistributeField - Distribute field data to match a given PetscSF, usually the SF from mesh distribution 76070034214SMatthew G. Knepley 76170034214SMatthew G. Knepley Collective on DM 76270034214SMatthew G. Knepley 76370034214SMatthew G. Knepley Input Parameters: 76470034214SMatthew G. Knepley + dm - The DMPlex object 76570034214SMatthew G. Knepley . pointSF - The PetscSF describing the communication pattern 76670034214SMatthew G. Knepley . originalSection - The PetscSection for existing data layout 76770034214SMatthew G. Knepley - originalVec - The existing data 76870034214SMatthew G. Knepley 76970034214SMatthew G. Knepley Output Parameters: 77070034214SMatthew G. Knepley + newSection - The PetscSF describing the new data layout 77170034214SMatthew G. Knepley - newVec - The new data 77270034214SMatthew G. Knepley 77370034214SMatthew G. Knepley Level: developer 77470034214SMatthew G. Knepley 77570034214SMatthew G. Knepley .seealso: DMPlexDistribute(), DMPlexDistributeFieldIS(), DMPlexDistributeData() 77670034214SMatthew G. Knepley @*/ 77770034214SMatthew G. Knepley PetscErrorCode DMPlexDistributeField(DM dm, PetscSF pointSF, PetscSection originalSection, Vec originalVec, PetscSection newSection, Vec newVec) 77870034214SMatthew G. Knepley { 77970034214SMatthew G. Knepley PetscSF fieldSF; 78070034214SMatthew G. Knepley PetscInt *remoteOffsets, fieldSize; 78170034214SMatthew G. Knepley PetscScalar *originalValues, *newValues; 78270034214SMatthew G. Knepley PetscErrorCode ierr; 78370034214SMatthew G. Knepley 78470034214SMatthew G. Knepley PetscFunctionBegin; 78570034214SMatthew G. Knepley ierr = PetscLogEventBegin(DMPLEX_DistributeField,dm,0,0,0);CHKERRQ(ierr); 78670034214SMatthew G. Knepley ierr = PetscSFDistributeSection(pointSF, originalSection, &remoteOffsets, newSection);CHKERRQ(ierr); 78770034214SMatthew G. Knepley 78870034214SMatthew G. Knepley ierr = PetscSectionGetStorageSize(newSection, &fieldSize);CHKERRQ(ierr); 78970034214SMatthew G. Knepley ierr = VecSetSizes(newVec, fieldSize, PETSC_DETERMINE);CHKERRQ(ierr); 79070034214SMatthew G. Knepley ierr = VecSetType(newVec,dm->vectype);CHKERRQ(ierr); 79170034214SMatthew G. Knepley 79270034214SMatthew G. Knepley ierr = VecGetArray(originalVec, &originalValues);CHKERRQ(ierr); 79370034214SMatthew G. Knepley ierr = VecGetArray(newVec, &newValues);CHKERRQ(ierr); 79470034214SMatthew G. Knepley ierr = PetscSFCreateSectionSF(pointSF, originalSection, remoteOffsets, newSection, &fieldSF);CHKERRQ(ierr); 7958a713f3bSLawrence Mitchell ierr = PetscFree(remoteOffsets);CHKERRQ(ierr); 79670034214SMatthew G. Knepley ierr = PetscSFBcastBegin(fieldSF, MPIU_SCALAR, originalValues, newValues);CHKERRQ(ierr); 79770034214SMatthew G. Knepley ierr = PetscSFBcastEnd(fieldSF, MPIU_SCALAR, originalValues, newValues);CHKERRQ(ierr); 79870034214SMatthew G. Knepley ierr = PetscSFDestroy(&fieldSF);CHKERRQ(ierr); 79970034214SMatthew G. Knepley ierr = VecRestoreArray(newVec, &newValues);CHKERRQ(ierr); 80070034214SMatthew G. Knepley ierr = VecRestoreArray(originalVec, &originalValues);CHKERRQ(ierr); 80170034214SMatthew G. Knepley ierr = PetscLogEventEnd(DMPLEX_DistributeField,dm,0,0,0);CHKERRQ(ierr); 80270034214SMatthew G. Knepley PetscFunctionReturn(0); 80370034214SMatthew G. Knepley } 80470034214SMatthew G. Knepley 80570034214SMatthew G. Knepley /*@ 80670034214SMatthew G. Knepley DMPlexDistributeFieldIS - Distribute field data to match a given PetscSF, usually the SF from mesh distribution 80770034214SMatthew G. Knepley 80870034214SMatthew G. Knepley Collective on DM 80970034214SMatthew G. Knepley 81070034214SMatthew G. Knepley Input Parameters: 81170034214SMatthew G. Knepley + dm - The DMPlex object 81270034214SMatthew G. Knepley . pointSF - The PetscSF describing the communication pattern 81370034214SMatthew G. Knepley . originalSection - The PetscSection for existing data layout 81470034214SMatthew G. Knepley - originalIS - The existing data 81570034214SMatthew G. Knepley 81670034214SMatthew G. Knepley Output Parameters: 81770034214SMatthew G. Knepley + newSection - The PetscSF describing the new data layout 81870034214SMatthew G. Knepley - newIS - The new data 81970034214SMatthew G. Knepley 82070034214SMatthew G. Knepley Level: developer 82170034214SMatthew G. Knepley 82270034214SMatthew G. Knepley .seealso: DMPlexDistribute(), DMPlexDistributeField(), DMPlexDistributeData() 82370034214SMatthew G. Knepley @*/ 82470034214SMatthew G. Knepley PetscErrorCode DMPlexDistributeFieldIS(DM dm, PetscSF pointSF, PetscSection originalSection, IS originalIS, PetscSection newSection, IS *newIS) 82570034214SMatthew G. Knepley { 82670034214SMatthew G. Knepley PetscSF fieldSF; 82770034214SMatthew G. Knepley PetscInt *newValues, *remoteOffsets, fieldSize; 82870034214SMatthew G. Knepley const PetscInt *originalValues; 82970034214SMatthew G. Knepley PetscErrorCode ierr; 83070034214SMatthew G. Knepley 83170034214SMatthew G. Knepley PetscFunctionBegin; 83270034214SMatthew G. Knepley ierr = PetscLogEventBegin(DMPLEX_DistributeField,dm,0,0,0);CHKERRQ(ierr); 83370034214SMatthew G. Knepley ierr = PetscSFDistributeSection(pointSF, originalSection, &remoteOffsets, newSection);CHKERRQ(ierr); 83470034214SMatthew G. Knepley 83570034214SMatthew G. Knepley ierr = PetscSectionGetStorageSize(newSection, &fieldSize);CHKERRQ(ierr); 836854ce69bSBarry Smith ierr = PetscMalloc1(fieldSize, &newValues);CHKERRQ(ierr); 83770034214SMatthew G. Knepley 83870034214SMatthew G. Knepley ierr = ISGetIndices(originalIS, &originalValues);CHKERRQ(ierr); 83970034214SMatthew G. Knepley ierr = PetscSFCreateSectionSF(pointSF, originalSection, remoteOffsets, newSection, &fieldSF);CHKERRQ(ierr); 8408a713f3bSLawrence Mitchell ierr = PetscFree(remoteOffsets);CHKERRQ(ierr); 841aaf8c182SMatthew G. Knepley ierr = PetscSFBcastBegin(fieldSF, MPIU_INT, (PetscInt *) originalValues, newValues);CHKERRQ(ierr); 842aaf8c182SMatthew G. Knepley ierr = PetscSFBcastEnd(fieldSF, MPIU_INT, (PetscInt *) originalValues, newValues);CHKERRQ(ierr); 84370034214SMatthew G. Knepley ierr = PetscSFDestroy(&fieldSF);CHKERRQ(ierr); 84470034214SMatthew G. Knepley ierr = ISRestoreIndices(originalIS, &originalValues);CHKERRQ(ierr); 84570034214SMatthew G. Knepley ierr = ISCreateGeneral(PetscObjectComm((PetscObject) pointSF), fieldSize, newValues, PETSC_OWN_POINTER, newIS);CHKERRQ(ierr); 84670034214SMatthew G. Knepley ierr = PetscLogEventEnd(DMPLEX_DistributeField,dm,0,0,0);CHKERRQ(ierr); 84770034214SMatthew G. Knepley PetscFunctionReturn(0); 84870034214SMatthew G. Knepley } 84970034214SMatthew G. Knepley 85070034214SMatthew G. Knepley /*@ 85170034214SMatthew G. Knepley DMPlexDistributeData - Distribute field data to match a given PetscSF, usually the SF from mesh distribution 85270034214SMatthew G. Knepley 85370034214SMatthew G. Knepley Collective on DM 85470034214SMatthew G. Knepley 85570034214SMatthew G. Knepley Input Parameters: 85670034214SMatthew G. Knepley + dm - The DMPlex object 85770034214SMatthew G. Knepley . pointSF - The PetscSF describing the communication pattern 85870034214SMatthew G. Knepley . originalSection - The PetscSection for existing data layout 85970034214SMatthew G. Knepley . datatype - The type of data 86070034214SMatthew G. Knepley - originalData - The existing data 86170034214SMatthew G. Knepley 86270034214SMatthew G. Knepley Output Parameters: 86370034214SMatthew G. Knepley + newSection - The PetscSection describing the new data layout 86470034214SMatthew G. Knepley - newData - The new data 86570034214SMatthew G. Knepley 86670034214SMatthew G. Knepley Level: developer 86770034214SMatthew G. Knepley 86870034214SMatthew G. Knepley .seealso: DMPlexDistribute(), DMPlexDistributeField() 86970034214SMatthew G. Knepley @*/ 87070034214SMatthew G. Knepley PetscErrorCode DMPlexDistributeData(DM dm, PetscSF pointSF, PetscSection originalSection, MPI_Datatype datatype, void *originalData, PetscSection newSection, void **newData) 87170034214SMatthew G. Knepley { 87270034214SMatthew G. Knepley PetscSF fieldSF; 87370034214SMatthew G. Knepley PetscInt *remoteOffsets, fieldSize; 87470034214SMatthew G. Knepley PetscMPIInt dataSize; 87570034214SMatthew G. Knepley PetscErrorCode ierr; 87670034214SMatthew G. Knepley 87770034214SMatthew G. Knepley PetscFunctionBegin; 87870034214SMatthew G. Knepley ierr = PetscLogEventBegin(DMPLEX_DistributeData,dm,0,0,0);CHKERRQ(ierr); 87970034214SMatthew G. Knepley ierr = PetscSFDistributeSection(pointSF, originalSection, &remoteOffsets, newSection);CHKERRQ(ierr); 88070034214SMatthew G. Knepley 88170034214SMatthew G. Knepley ierr = PetscSectionGetStorageSize(newSection, &fieldSize);CHKERRQ(ierr); 88270034214SMatthew G. Knepley ierr = MPI_Type_size(datatype, &dataSize);CHKERRQ(ierr); 88370034214SMatthew G. Knepley ierr = PetscMalloc(fieldSize * dataSize, newData);CHKERRQ(ierr); 88470034214SMatthew G. Knepley 88570034214SMatthew G. Knepley ierr = PetscSFCreateSectionSF(pointSF, originalSection, remoteOffsets, newSection, &fieldSF);CHKERRQ(ierr); 8868a713f3bSLawrence Mitchell ierr = PetscFree(remoteOffsets);CHKERRQ(ierr); 88770034214SMatthew G. Knepley ierr = PetscSFBcastBegin(fieldSF, datatype, originalData, *newData);CHKERRQ(ierr); 88870034214SMatthew G. Knepley ierr = PetscSFBcastEnd(fieldSF, datatype, originalData, *newData);CHKERRQ(ierr); 88970034214SMatthew G. Knepley ierr = PetscSFDestroy(&fieldSF);CHKERRQ(ierr); 89070034214SMatthew G. Knepley ierr = PetscLogEventEnd(DMPLEX_DistributeData,dm,0,0,0);CHKERRQ(ierr); 89170034214SMatthew G. Knepley PetscFunctionReturn(0); 89270034214SMatthew G. Knepley } 89370034214SMatthew G. Knepley 89424cc2ca5SMatthew G. Knepley static PetscErrorCode DMPlexDistributeCones(DM dm, PetscSF migrationSF, ISLocalToGlobalMapping original, ISLocalToGlobalMapping renumbering, DM dmParallel) 895cc71bff1SMichael Lange { 896cc71bff1SMichael Lange DM_Plex *pmesh = (DM_Plex*) (dmParallel)->data; 897cc71bff1SMichael Lange MPI_Comm comm; 898cc71bff1SMichael Lange PetscSF coneSF; 899cc71bff1SMichael Lange PetscSection originalConeSection, newConeSection; 900ac04eaf7SToby Isaac PetscInt *remoteOffsets, *cones, *globCones, *newCones, newConesSize; 901cc71bff1SMichael Lange PetscBool flg; 902cc71bff1SMichael Lange PetscErrorCode ierr; 903cc71bff1SMichael Lange 904cc71bff1SMichael Lange PetscFunctionBegin; 905cc71bff1SMichael Lange PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 9060c86c063SLisandro Dalcin PetscValidHeaderSpecific(dmParallel, DM_CLASSID, 5); 9070c86c063SLisandro Dalcin ierr = PetscLogEventBegin(DMPLEX_DistributeCones,dm,0,0,0);CHKERRQ(ierr); 908cc71bff1SMichael Lange /* Distribute cone section */ 909cc71bff1SMichael Lange ierr = PetscObjectGetComm((PetscObject)dm, &comm);CHKERRQ(ierr); 910cc71bff1SMichael Lange ierr = DMPlexGetConeSection(dm, &originalConeSection);CHKERRQ(ierr); 911cc71bff1SMichael Lange ierr = DMPlexGetConeSection(dmParallel, &newConeSection);CHKERRQ(ierr); 912cc71bff1SMichael Lange ierr = PetscSFDistributeSection(migrationSF, originalConeSection, &remoteOffsets, newConeSection);CHKERRQ(ierr); 913cc71bff1SMichael Lange ierr = DMSetUp(dmParallel);CHKERRQ(ierr); 914cc71bff1SMichael Lange { 915cc71bff1SMichael Lange PetscInt pStart, pEnd, p; 916cc71bff1SMichael Lange 917cc71bff1SMichael Lange ierr = PetscSectionGetChart(newConeSection, &pStart, &pEnd);CHKERRQ(ierr); 918cc71bff1SMichael Lange for (p = pStart; p < pEnd; ++p) { 919cc71bff1SMichael Lange PetscInt coneSize; 920cc71bff1SMichael Lange ierr = PetscSectionGetDof(newConeSection, p, &coneSize);CHKERRQ(ierr); 921cc71bff1SMichael Lange pmesh->maxConeSize = PetscMax(pmesh->maxConeSize, coneSize); 922cc71bff1SMichael Lange } 923cc71bff1SMichael Lange } 924cc71bff1SMichael Lange /* Communicate and renumber cones */ 925cc71bff1SMichael Lange ierr = PetscSFCreateSectionSF(migrationSF, originalConeSection, remoteOffsets, newConeSection, &coneSF);CHKERRQ(ierr); 9268a713f3bSLawrence Mitchell ierr = PetscFree(remoteOffsets);CHKERRQ(ierr); 927cc71bff1SMichael Lange ierr = DMPlexGetCones(dm, &cones);CHKERRQ(ierr); 928ac04eaf7SToby Isaac if (original) { 929ac04eaf7SToby Isaac PetscInt numCones; 930ac04eaf7SToby Isaac 931367003a6SStefano Zampini ierr = PetscSectionGetStorageSize(originalConeSection,&numCones);CHKERRQ(ierr); 932367003a6SStefano Zampini ierr = PetscMalloc1(numCones,&globCones);CHKERRQ(ierr); 933ac04eaf7SToby Isaac ierr = ISLocalToGlobalMappingApplyBlock(original, numCones, cones, globCones);CHKERRQ(ierr); 934367003a6SStefano Zampini } else { 935ac04eaf7SToby Isaac globCones = cones; 936ac04eaf7SToby Isaac } 937cc71bff1SMichael Lange ierr = DMPlexGetCones(dmParallel, &newCones);CHKERRQ(ierr); 938ac04eaf7SToby Isaac ierr = PetscSFBcastBegin(coneSF, MPIU_INT, globCones, newCones);CHKERRQ(ierr); 939ac04eaf7SToby Isaac ierr = PetscSFBcastEnd(coneSF, MPIU_INT, globCones, newCones);CHKERRQ(ierr); 940ac04eaf7SToby Isaac if (original) { 941ac04eaf7SToby Isaac ierr = PetscFree(globCones);CHKERRQ(ierr); 942ac04eaf7SToby Isaac } 943cc71bff1SMichael Lange ierr = PetscSectionGetStorageSize(newConeSection, &newConesSize);CHKERRQ(ierr); 944cc71bff1SMichael Lange ierr = ISGlobalToLocalMappingApplyBlock(renumbering, IS_GTOLM_MASK, newConesSize, newCones, NULL, newCones);CHKERRQ(ierr); 94562795ce3SStefano Zampini #if defined(PETSC_USE_DEBUG) 9463533c52bSMatthew G. Knepley { 9473533c52bSMatthew G. Knepley PetscInt p; 9483533c52bSMatthew G. Knepley PetscBool valid = PETSC_TRUE; 9493533c52bSMatthew G. Knepley for (p = 0; p < newConesSize; ++p) { 950367003a6SStefano Zampini if (newCones[p] < 0) {valid = PETSC_FALSE; ierr = PetscPrintf(PETSC_COMM_SELF, "[%d] Point %D not in overlap SF\n", PetscGlobalRank,p);CHKERRQ(ierr);} 9513533c52bSMatthew G. Knepley } 9523533c52bSMatthew G. Knepley if (!valid) SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Invalid global to local map"); 9533533c52bSMatthew G. Knepley } 9543533c52bSMatthew G. Knepley #endif 955c5929fdfSBarry Smith ierr = PetscOptionsHasName(((PetscObject) dm)->options,((PetscObject) dm)->prefix, "-cones_view", &flg);CHKERRQ(ierr); 956cc71bff1SMichael Lange if (flg) { 957cc71bff1SMichael Lange ierr = PetscPrintf(comm, "Serial Cone Section:\n");CHKERRQ(ierr); 958*a8c5bd36SStefano Zampini ierr = PetscSectionView(originalConeSection, PETSC_VIEWER_STDOUT_(comm));CHKERRQ(ierr); 959cc71bff1SMichael Lange ierr = PetscPrintf(comm, "Parallel Cone Section:\n");CHKERRQ(ierr); 960*a8c5bd36SStefano Zampini ierr = PetscSectionView(newConeSection, PETSC_VIEWER_STDOUT_(comm));CHKERRQ(ierr); 961cc71bff1SMichael Lange ierr = PetscSFView(coneSF, NULL);CHKERRQ(ierr); 962cc71bff1SMichael Lange } 963cc71bff1SMichael Lange ierr = DMPlexGetConeOrientations(dm, &cones);CHKERRQ(ierr); 964cc71bff1SMichael Lange ierr = DMPlexGetConeOrientations(dmParallel, &newCones);CHKERRQ(ierr); 965cc71bff1SMichael Lange ierr = PetscSFBcastBegin(coneSF, MPIU_INT, cones, newCones);CHKERRQ(ierr); 966cc71bff1SMichael Lange ierr = PetscSFBcastEnd(coneSF, MPIU_INT, cones, newCones);CHKERRQ(ierr); 967cc71bff1SMichael Lange ierr = PetscSFDestroy(&coneSF);CHKERRQ(ierr); 968cc71bff1SMichael Lange ierr = PetscLogEventEnd(DMPLEX_DistributeCones,dm,0,0,0);CHKERRQ(ierr); 969eaf898f9SPatrick Sanan /* Create supports and stratify DMPlex */ 970cc71bff1SMichael Lange { 971cc71bff1SMichael Lange PetscInt pStart, pEnd; 972cc71bff1SMichael Lange 973cc71bff1SMichael Lange ierr = PetscSectionGetChart(pmesh->coneSection, &pStart, &pEnd);CHKERRQ(ierr); 974cc71bff1SMichael Lange ierr = PetscSectionSetChart(pmesh->supportSection, pStart, pEnd);CHKERRQ(ierr); 975cc71bff1SMichael Lange } 976cc71bff1SMichael Lange ierr = DMPlexSymmetrize(dmParallel);CHKERRQ(ierr); 977cc71bff1SMichael Lange ierr = DMPlexStratify(dmParallel);CHKERRQ(ierr); 9781cf84007SMatthew G. Knepley { 9791cf84007SMatthew G. Knepley PetscBool useCone, useClosure, useAnchors; 9801cf84007SMatthew G. Knepley 981b0441da4SMatthew G. Knepley ierr = DMGetBasicAdjacency(dm, &useCone, &useClosure);CHKERRQ(ierr); 982b0441da4SMatthew G. Knepley ierr = DMSetBasicAdjacency(dmParallel, useCone, useClosure);CHKERRQ(ierr); 9831cf84007SMatthew G. Knepley ierr = DMPlexGetAdjacencyUseAnchors(dm, &useAnchors);CHKERRQ(ierr); 9841cf84007SMatthew G. Knepley ierr = DMPlexSetAdjacencyUseAnchors(dmParallel, useAnchors);CHKERRQ(ierr); 9851cf84007SMatthew G. Knepley } 986cc71bff1SMichael Lange PetscFunctionReturn(0); 987cc71bff1SMichael Lange } 988cc71bff1SMichael Lange 98924cc2ca5SMatthew G. Knepley static PetscErrorCode DMPlexDistributeCoordinates(DM dm, PetscSF migrationSF, DM dmParallel) 9900df0e737SMichael Lange { 9910df0e737SMichael Lange MPI_Comm comm; 9920df0e737SMichael Lange PetscSection originalCoordSection, newCoordSection; 9930df0e737SMichael Lange Vec originalCoordinates, newCoordinates; 9940df0e737SMichael Lange PetscInt bs; 99590b157c4SStefano Zampini PetscBool isper; 9960df0e737SMichael Lange const char *name; 9970df0e737SMichael Lange const PetscReal *maxCell, *L; 9985dc8c3f7SMatthew G. Knepley const DMBoundaryType *bd; 9990df0e737SMichael Lange PetscErrorCode ierr; 10000df0e737SMichael Lange 10010df0e737SMichael Lange PetscFunctionBegin; 10020df0e737SMichael Lange PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 10030c86c063SLisandro Dalcin PetscValidHeaderSpecific(dmParallel, DM_CLASSID, 3); 10040df0e737SMichael Lange 10050df0e737SMichael Lange ierr = PetscObjectGetComm((PetscObject)dm, &comm);CHKERRQ(ierr); 10060df0e737SMichael Lange ierr = DMGetCoordinateSection(dm, &originalCoordSection);CHKERRQ(ierr); 10070df0e737SMichael Lange ierr = DMGetCoordinateSection(dmParallel, &newCoordSection);CHKERRQ(ierr); 10080df0e737SMichael Lange ierr = DMGetCoordinatesLocal(dm, &originalCoordinates);CHKERRQ(ierr); 10090df0e737SMichael Lange if (originalCoordinates) { 10108b9ced59SLisandro Dalcin ierr = VecCreate(PETSC_COMM_SELF, &newCoordinates);CHKERRQ(ierr); 10110df0e737SMichael Lange ierr = PetscObjectGetName((PetscObject) originalCoordinates, &name);CHKERRQ(ierr); 10120df0e737SMichael Lange ierr = PetscObjectSetName((PetscObject) newCoordinates, name);CHKERRQ(ierr); 10130df0e737SMichael Lange 10140df0e737SMichael Lange ierr = DMPlexDistributeField(dm, migrationSF, originalCoordSection, originalCoordinates, newCoordSection, newCoordinates);CHKERRQ(ierr); 10150df0e737SMichael Lange ierr = DMSetCoordinatesLocal(dmParallel, newCoordinates);CHKERRQ(ierr); 10160df0e737SMichael Lange ierr = VecGetBlockSize(originalCoordinates, &bs);CHKERRQ(ierr); 10170df0e737SMichael Lange ierr = VecSetBlockSize(newCoordinates, bs);CHKERRQ(ierr); 10180df0e737SMichael Lange ierr = VecDestroy(&newCoordinates);CHKERRQ(ierr); 10190df0e737SMichael Lange } 102090b157c4SStefano Zampini ierr = DMGetPeriodicity(dm, &isper, &maxCell, &L, &bd);CHKERRQ(ierr); 102190b157c4SStefano Zampini ierr = DMSetPeriodicity(dmParallel, isper, maxCell, L, bd);CHKERRQ(ierr); 10220df0e737SMichael Lange PetscFunctionReturn(0); 10230df0e737SMichael Lange } 10240df0e737SMichael Lange 102524cc2ca5SMatthew G. Knepley static PetscErrorCode DMPlexDistributeLabels(DM dm, PetscSF migrationSF, DM dmParallel) 10260df0e737SMichael Lange { 1027df0420ecSMatthew G. Knepley DM_Plex *mesh = (DM_Plex*) dm->data; 10280df0e737SMichael Lange MPI_Comm comm; 10297980c9d4SMatthew G. Knepley DMLabel depthLabel; 10300df0e737SMichael Lange PetscMPIInt rank; 10317980c9d4SMatthew G. Knepley PetscInt depth, d, numLabels, numLocalLabels, l; 1032df0420ecSMatthew G. Knepley PetscBool hasLabels = PETSC_FALSE, lsendDepth, sendDepth; 1033df0420ecSMatthew G. Knepley PetscObjectState depthState = -1; 10340df0e737SMichael Lange PetscErrorCode ierr; 10350df0e737SMichael Lange 10360df0e737SMichael Lange PetscFunctionBegin; 10370df0e737SMichael Lange PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 10380c86c063SLisandro Dalcin PetscValidHeaderSpecific(dmParallel, DM_CLASSID, 3); 10390c86c063SLisandro Dalcin 10400df0e737SMichael Lange ierr = PetscLogEventBegin(DMPLEX_DistributeLabels,dm,0,0,0);CHKERRQ(ierr); 10410df0e737SMichael Lange ierr = PetscObjectGetComm((PetscObject)dm, &comm);CHKERRQ(ierr); 10420df0e737SMichael Lange ierr = MPI_Comm_rank(comm, &rank);CHKERRQ(ierr); 10430df0e737SMichael Lange 1044df0420ecSMatthew G. Knepley /* If the user has changed the depth label, communicate it instead */ 10457980c9d4SMatthew G. Knepley ierr = DMPlexGetDepth(dm, &depth);CHKERRQ(ierr); 10467980c9d4SMatthew G. Knepley ierr = DMPlexGetDepthLabel(dm, &depthLabel);CHKERRQ(ierr); 1047d67d17b1SMatthew G. Knepley if (depthLabel) {ierr = PetscObjectStateGet((PetscObject) depthLabel, &depthState);CHKERRQ(ierr);} 1048df0420ecSMatthew G. Knepley lsendDepth = mesh->depthState != depthState ? PETSC_TRUE : PETSC_FALSE; 1049b2566f29SBarry Smith ierr = MPIU_Allreduce(&lsendDepth, &sendDepth, 1, MPIU_BOOL, MPI_LOR, comm);CHKERRQ(ierr); 1050df0420ecSMatthew G. Knepley if (sendDepth) { 10517980c9d4SMatthew G. Knepley ierr = DMRemoveLabel(dmParallel, "depth", &depthLabel);CHKERRQ(ierr); 10527980c9d4SMatthew G. Knepley ierr = DMLabelDestroy(&depthLabel);CHKERRQ(ierr); 1053df0420ecSMatthew G. Knepley } 1054d995df53SMatthew G. Knepley /* Everyone must have either the same number of labels, or none */ 1055c58f1c22SToby Isaac ierr = DMGetNumLabels(dm, &numLocalLabels);CHKERRQ(ierr); 1056d995df53SMatthew G. Knepley numLabels = numLocalLabels; 10570df0e737SMichael Lange ierr = MPI_Bcast(&numLabels, 1, MPIU_INT, 0, comm);CHKERRQ(ierr); 1058627847f0SMatthew G. Knepley if (numLabels == numLocalLabels) hasLabels = PETSC_TRUE; 1059bdd2d751SMichael Lange for (l = numLabels-1; l >= 0; --l) { 1060bdd2d751SMichael Lange DMLabel label = NULL, labelNew = NULL; 106183e10cb3SLisandro Dalcin PetscBool isDepth, lisOutput = PETSC_TRUE, isOutput; 1062d67d17b1SMatthew G. Knepley const char *name = NULL; 10630df0e737SMichael Lange 1064d67d17b1SMatthew G. Knepley if (hasLabels) { 1065d67d17b1SMatthew G. Knepley ierr = DMGetLabelByNum(dm, l, &label);CHKERRQ(ierr); 10660df0e737SMichael Lange /* Skip "depth" because it is recreated */ 1067d67d17b1SMatthew G. Knepley ierr = PetscObjectGetName((PetscObject) label, &name);CHKERRQ(ierr); 1068d67d17b1SMatthew G. Knepley ierr = PetscStrcmp(name, "depth", &isDepth);CHKERRQ(ierr); 1069d67d17b1SMatthew G. Knepley } 107083e10cb3SLisandro Dalcin ierr = MPI_Bcast(&isDepth, 1, MPIU_BOOL, 0, comm);CHKERRQ(ierr); 107183e10cb3SLisandro Dalcin if (isDepth && !sendDepth) continue; 1072bdd2d751SMichael Lange ierr = DMLabelDistribute(label, migrationSF, &labelNew);CHKERRQ(ierr); 107383e10cb3SLisandro Dalcin if (isDepth) { 10747980c9d4SMatthew G. Knepley /* Put in any missing strata which can occur if users are managing the depth label themselves */ 10757980c9d4SMatthew G. Knepley PetscInt gdepth; 10767980c9d4SMatthew G. Knepley 10777980c9d4SMatthew G. Knepley ierr = MPIU_Allreduce(&depth, &gdepth, 1, MPIU_INT, MPI_MAX, comm);CHKERRQ(ierr); 10787980c9d4SMatthew G. Knepley if ((depth >= 0) && (gdepth != depth)) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Inconsistent Plex depth %d != %d", depth, gdepth); 10797980c9d4SMatthew G. Knepley for (d = 0; d <= gdepth; ++d) { 10807980c9d4SMatthew G. Knepley PetscBool has; 10817980c9d4SMatthew G. Knepley 10827980c9d4SMatthew G. Knepley ierr = DMLabelHasStratum(labelNew, d, &has);CHKERRQ(ierr); 108383e10cb3SLisandro Dalcin if (!has) {ierr = DMLabelAddStratum(labelNew, d);CHKERRQ(ierr);} 10847980c9d4SMatthew G. Knepley } 10857980c9d4SMatthew G. Knepley } 1086c58f1c22SToby Isaac ierr = DMAddLabel(dmParallel, labelNew);CHKERRQ(ierr); 108783e10cb3SLisandro Dalcin /* Put the output flag in the new label */ 1088d67d17b1SMatthew G. Knepley if (hasLabels) {ierr = DMGetLabelOutput(dm, name, &lisOutput);CHKERRQ(ierr);} 108983e10cb3SLisandro Dalcin ierr = MPIU_Allreduce(&lisOutput, &isOutput, 1, MPIU_BOOL, MPI_LAND, comm);CHKERRQ(ierr); 1090d67d17b1SMatthew G. Knepley ierr = PetscObjectGetName((PetscObject) labelNew, &name);CHKERRQ(ierr); 1091d67d17b1SMatthew G. Knepley ierr = DMSetLabelOutput(dmParallel, name, isOutput);CHKERRQ(ierr); 10920df0e737SMichael Lange } 10930df0e737SMichael Lange ierr = PetscLogEventEnd(DMPLEX_DistributeLabels,dm,0,0,0);CHKERRQ(ierr); 10940df0e737SMichael Lange PetscFunctionReturn(0); 10950df0e737SMichael Lange } 10960df0e737SMichael Lange 109724cc2ca5SMatthew G. Knepley static PetscErrorCode DMPlexDistributeSetupHybrid(DM dm, PetscSF migrationSF, ISLocalToGlobalMapping renumbering, DM dmParallel) 10989734c634SMichael Lange { 10999734c634SMichael Lange DM_Plex *mesh = (DM_Plex*) dm->data; 11009734c634SMichael Lange DM_Plex *pmesh = (DM_Plex*) (dmParallel)->data; 1101f0e73a3dSToby Isaac PetscBool *isHybrid, *isHybridParallel; 1102f0e73a3dSToby Isaac PetscInt dim, depth, d; 1103f0e73a3dSToby Isaac PetscInt pStart, pEnd, pStartP, pEndP; 11049734c634SMichael Lange PetscErrorCode ierr; 11059734c634SMichael Lange 11069734c634SMichael Lange PetscFunctionBegin; 11079734c634SMichael Lange PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 11080c86c063SLisandro Dalcin PetscValidHeaderSpecific(dmParallel, DM_CLASSID, 3); 11099734c634SMichael Lange 11109734c634SMichael Lange ierr = DMGetDimension(dm, &dim);CHKERRQ(ierr); 11119734c634SMichael Lange ierr = DMPlexGetDepth(dm, &depth);CHKERRQ(ierr); 1112f0e73a3dSToby Isaac ierr = DMPlexGetChart(dm,&pStart,&pEnd);CHKERRQ(ierr); 1113f0e73a3dSToby Isaac ierr = DMPlexGetChart(dmParallel,&pStartP,&pEndP);CHKERRQ(ierr); 1114f0e73a3dSToby Isaac ierr = PetscCalloc2(pEnd-pStart,&isHybrid,pEndP-pStartP,&isHybridParallel);CHKERRQ(ierr); 1115f0e73a3dSToby Isaac for (d = 0; d <= depth; d++) { 1116f0e73a3dSToby Isaac PetscInt hybridMax = (depth == 1 && d == 1) ? mesh->hybridPointMax[dim] : mesh->hybridPointMax[d]; 11179734c634SMichael Lange 1118f0e73a3dSToby Isaac if (hybridMax >= 0) { 1119f0e73a3dSToby Isaac PetscInt sStart, sEnd, p; 11209734c634SMichael Lange 1121f0e73a3dSToby Isaac ierr = DMPlexGetDepthStratum(dm,d,&sStart,&sEnd);CHKERRQ(ierr); 1122f0e73a3dSToby Isaac for (p = hybridMax; p < sEnd; p++) isHybrid[p-pStart] = PETSC_TRUE; 11239734c634SMichael Lange } 11249734c634SMichael Lange } 1125f0e73a3dSToby Isaac ierr = PetscSFBcastBegin(migrationSF,MPIU_BOOL,isHybrid,isHybridParallel);CHKERRQ(ierr); 1126f0e73a3dSToby Isaac ierr = PetscSFBcastEnd(migrationSF,MPIU_BOOL,isHybrid,isHybridParallel);CHKERRQ(ierr); 1127f0e73a3dSToby Isaac for (d = 0; d <= dim; d++) pmesh->hybridPointMax[d] = -1; 1128f0e73a3dSToby Isaac for (d = 0; d <= depth; d++) { 1129f0e73a3dSToby Isaac PetscInt sStart, sEnd, p, dd; 1130f0e73a3dSToby Isaac 1131f0e73a3dSToby Isaac ierr = DMPlexGetDepthStratum(dmParallel,d,&sStart,&sEnd);CHKERRQ(ierr); 1132f0e73a3dSToby Isaac dd = (depth == 1 && d == 1) ? dim : d; 1133f0e73a3dSToby Isaac for (p = sStart; p < sEnd; p++) { 1134f0e73a3dSToby Isaac if (isHybridParallel[p-pStartP]) { 1135f0e73a3dSToby Isaac pmesh->hybridPointMax[dd] = p; 1136f0e73a3dSToby Isaac break; 1137f0e73a3dSToby Isaac } 1138f0e73a3dSToby Isaac } 1139f0e73a3dSToby Isaac } 1140f0e73a3dSToby Isaac ierr = PetscFree2(isHybrid,isHybridParallel);CHKERRQ(ierr); 11419734c634SMichael Lange PetscFunctionReturn(0); 11429734c634SMichael Lange } 11430df0e737SMichael Lange 114424cc2ca5SMatthew G. Knepley static PetscErrorCode DMPlexDistributeSetupTree(DM dm, PetscSF migrationSF, ISLocalToGlobalMapping original, ISLocalToGlobalMapping renumbering, DM dmParallel) 1145a6f36705SMichael Lange { 114615078cd4SMichael Lange DM_Plex *mesh = (DM_Plex*) dm->data; 114715078cd4SMichael Lange DM_Plex *pmesh = (DM_Plex*) (dmParallel)->data; 1148a6f36705SMichael Lange MPI_Comm comm; 1149a6f36705SMichael Lange DM refTree; 1150a6f36705SMichael Lange PetscSection origParentSection, newParentSection; 1151a6f36705SMichael Lange PetscInt *origParents, *origChildIDs; 1152a6f36705SMichael Lange PetscBool flg; 1153a6f36705SMichael Lange PetscErrorCode ierr; 1154a6f36705SMichael Lange 1155a6f36705SMichael Lange PetscFunctionBegin; 1156a6f36705SMichael Lange PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 11570c86c063SLisandro Dalcin PetscValidHeaderSpecific(dmParallel, DM_CLASSID, 5); 1158a6f36705SMichael Lange ierr = PetscObjectGetComm((PetscObject)dm, &comm);CHKERRQ(ierr); 1159a6f36705SMichael Lange 1160a6f36705SMichael Lange /* Set up tree */ 1161a6f36705SMichael Lange ierr = DMPlexGetReferenceTree(dm,&refTree);CHKERRQ(ierr); 1162a6f36705SMichael Lange ierr = DMPlexSetReferenceTree(dmParallel,refTree);CHKERRQ(ierr); 1163a6f36705SMichael Lange ierr = DMPlexGetTree(dm,&origParentSection,&origParents,&origChildIDs,NULL,NULL);CHKERRQ(ierr); 1164a6f36705SMichael Lange if (origParentSection) { 1165a6f36705SMichael Lange PetscInt pStart, pEnd; 116608633170SToby Isaac PetscInt *newParents, *newChildIDs, *globParents; 1167a6f36705SMichael Lange PetscInt *remoteOffsetsParents, newParentSize; 1168a6f36705SMichael Lange PetscSF parentSF; 1169a6f36705SMichael Lange 1170a6f36705SMichael Lange ierr = DMPlexGetChart(dmParallel, &pStart, &pEnd);CHKERRQ(ierr); 1171a6f36705SMichael Lange ierr = PetscSectionCreate(PetscObjectComm((PetscObject)dmParallel),&newParentSection);CHKERRQ(ierr); 1172a6f36705SMichael Lange ierr = PetscSectionSetChart(newParentSection,pStart,pEnd);CHKERRQ(ierr); 1173a6f36705SMichael Lange ierr = PetscSFDistributeSection(migrationSF, origParentSection, &remoteOffsetsParents, newParentSection);CHKERRQ(ierr); 1174a6f36705SMichael Lange ierr = PetscSFCreateSectionSF(migrationSF, origParentSection, remoteOffsetsParents, newParentSection, &parentSF);CHKERRQ(ierr); 11758a713f3bSLawrence Mitchell ierr = PetscFree(remoteOffsetsParents);CHKERRQ(ierr); 1176a6f36705SMichael Lange ierr = PetscSectionGetStorageSize(newParentSection,&newParentSize);CHKERRQ(ierr); 1177a6f36705SMichael Lange ierr = PetscMalloc2(newParentSize,&newParents,newParentSize,&newChildIDs);CHKERRQ(ierr); 117808633170SToby Isaac if (original) { 117908633170SToby Isaac PetscInt numParents; 118008633170SToby Isaac 118108633170SToby Isaac ierr = PetscSectionGetStorageSize(origParentSection,&numParents);CHKERRQ(ierr); 118208633170SToby Isaac ierr = PetscMalloc1(numParents,&globParents);CHKERRQ(ierr); 118308633170SToby Isaac ierr = ISLocalToGlobalMappingApplyBlock(original, numParents, origParents, globParents);CHKERRQ(ierr); 118408633170SToby Isaac } 118508633170SToby Isaac else { 118608633170SToby Isaac globParents = origParents; 118708633170SToby Isaac } 118808633170SToby Isaac ierr = PetscSFBcastBegin(parentSF, MPIU_INT, globParents, newParents);CHKERRQ(ierr); 118908633170SToby Isaac ierr = PetscSFBcastEnd(parentSF, MPIU_INT, globParents, newParents);CHKERRQ(ierr); 119008633170SToby Isaac if (original) { 119108633170SToby Isaac ierr = PetscFree(globParents);CHKERRQ(ierr); 119208633170SToby Isaac } 1193a6f36705SMichael Lange ierr = PetscSFBcastBegin(parentSF, MPIU_INT, origChildIDs, newChildIDs);CHKERRQ(ierr); 1194a6f36705SMichael Lange ierr = PetscSFBcastEnd(parentSF, MPIU_INT, origChildIDs, newChildIDs);CHKERRQ(ierr); 1195a6f36705SMichael Lange ierr = ISGlobalToLocalMappingApplyBlock(renumbering,IS_GTOLM_MASK, newParentSize, newParents, NULL, newParents);CHKERRQ(ierr); 119662795ce3SStefano Zampini #if defined(PETSC_USE_DEBUG) 11974a54e071SToby Isaac { 11984a54e071SToby Isaac PetscInt p; 11994a54e071SToby Isaac PetscBool valid = PETSC_TRUE; 12004a54e071SToby Isaac for (p = 0; p < newParentSize; ++p) { 12014a54e071SToby Isaac if (newParents[p] < 0) {valid = PETSC_FALSE; ierr = PetscPrintf(PETSC_COMM_SELF, "Point %d not in overlap SF\n", p);CHKERRQ(ierr);} 12024a54e071SToby Isaac } 12034a54e071SToby Isaac if (!valid) SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Invalid global to local map"); 12044a54e071SToby Isaac } 12054a54e071SToby Isaac #endif 1206c5929fdfSBarry Smith ierr = PetscOptionsHasName(((PetscObject) dm)->options,((PetscObject) dm)->prefix, "-parents_view", &flg);CHKERRQ(ierr); 1207a6f36705SMichael Lange if (flg) { 1208a6f36705SMichael Lange ierr = PetscPrintf(comm, "Serial Parent Section: \n");CHKERRQ(ierr); 1209*a8c5bd36SStefano Zampini ierr = PetscSectionView(origParentSection, PETSC_VIEWER_STDOUT_(comm));CHKERRQ(ierr); 1210a6f36705SMichael Lange ierr = PetscPrintf(comm, "Parallel Parent Section: \n");CHKERRQ(ierr); 1211*a8c5bd36SStefano Zampini ierr = PetscSectionView(newParentSection, PETSC_VIEWER_STDOUT_(comm));CHKERRQ(ierr); 1212a6f36705SMichael Lange ierr = PetscSFView(parentSF, NULL);CHKERRQ(ierr); 1213a6f36705SMichael Lange } 1214a6f36705SMichael Lange ierr = DMPlexSetTree(dmParallel,newParentSection,newParents,newChildIDs);CHKERRQ(ierr); 1215a6f36705SMichael Lange ierr = PetscSectionDestroy(&newParentSection);CHKERRQ(ierr); 1216a6f36705SMichael Lange ierr = PetscFree2(newParents,newChildIDs);CHKERRQ(ierr); 1217a6f36705SMichael Lange ierr = PetscSFDestroy(&parentSF);CHKERRQ(ierr); 1218a6f36705SMichael Lange } 121915078cd4SMichael Lange pmesh->useAnchors = mesh->useAnchors; 1220a6f36705SMichael Lange PetscFunctionReturn(0); 1221a6f36705SMichael Lange } 12220df0e737SMichael Lange 122324cc2ca5SMatthew G. Knepley PETSC_UNUSED static PetscErrorCode DMPlexDistributeSF(DM dm, PetscSF migrationSF, DM dmParallel) 12244eca1733SMichael Lange { 12259852e123SBarry Smith PetscMPIInt rank, size; 12264eca1733SMichael Lange MPI_Comm comm; 12274eca1733SMichael Lange PetscErrorCode ierr; 12284eca1733SMichael Lange 12294eca1733SMichael Lange PetscFunctionBegin; 12304eca1733SMichael Lange PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 12310c86c063SLisandro Dalcin PetscValidHeaderSpecific(dmParallel, DM_CLASSID, 3); 12324eca1733SMichael Lange 12334eca1733SMichael Lange /* Create point SF for parallel mesh */ 12344eca1733SMichael Lange ierr = PetscLogEventBegin(DMPLEX_DistributeSF,dm,0,0,0);CHKERRQ(ierr); 12354eca1733SMichael Lange ierr = PetscObjectGetComm((PetscObject)dm, &comm);CHKERRQ(ierr); 12364eca1733SMichael Lange ierr = MPI_Comm_rank(comm, &rank);CHKERRQ(ierr); 12379852e123SBarry Smith ierr = MPI_Comm_size(comm, &size);CHKERRQ(ierr); 12384eca1733SMichael Lange { 12394eca1733SMichael Lange const PetscInt *leaves; 12404eca1733SMichael Lange PetscSFNode *remotePoints, *rowners, *lowners; 12414eca1733SMichael Lange PetscInt numRoots, numLeaves, numGhostPoints = 0, p, gp, *ghostPoints; 12424eca1733SMichael Lange PetscInt pStart, pEnd; 12434eca1733SMichael Lange 12444eca1733SMichael Lange ierr = DMPlexGetChart(dmParallel, &pStart, &pEnd);CHKERRQ(ierr); 12454eca1733SMichael Lange ierr = PetscSFGetGraph(migrationSF, &numRoots, &numLeaves, &leaves, NULL);CHKERRQ(ierr); 12464eca1733SMichael Lange ierr = PetscMalloc2(numRoots,&rowners,numLeaves,&lowners);CHKERRQ(ierr); 12474eca1733SMichael Lange for (p=0; p<numRoots; p++) { 12484eca1733SMichael Lange rowners[p].rank = -1; 12494eca1733SMichael Lange rowners[p].index = -1; 12504eca1733SMichael Lange } 12514eca1733SMichael Lange ierr = PetscSFBcastBegin(migrationSF, MPIU_2INT, rowners, lowners);CHKERRQ(ierr); 12524eca1733SMichael Lange ierr = PetscSFBcastEnd(migrationSF, MPIU_2INT, rowners, lowners);CHKERRQ(ierr); 12534eca1733SMichael Lange for (p = 0; p < numLeaves; ++p) { 12544eca1733SMichael Lange if (lowners[p].rank < 0 || lowners[p].rank == rank) { /* Either put in a bid or we know we own it */ 12554eca1733SMichael Lange lowners[p].rank = rank; 12564eca1733SMichael Lange lowners[p].index = leaves ? leaves[p] : p; 12574eca1733SMichael Lange } else if (lowners[p].rank >= 0) { /* Point already claimed so flag so that MAXLOC does not listen to us */ 12584eca1733SMichael Lange lowners[p].rank = -2; 12594eca1733SMichael Lange lowners[p].index = -2; 12604eca1733SMichael Lange } 12614eca1733SMichael Lange } 12624eca1733SMichael Lange for (p=0; p<numRoots; p++) { /* Root must not participate in the rediction, flag so that MAXLOC does not use */ 12634eca1733SMichael Lange rowners[p].rank = -3; 12644eca1733SMichael Lange rowners[p].index = -3; 12654eca1733SMichael Lange } 12664eca1733SMichael Lange ierr = PetscSFReduceBegin(migrationSF, MPIU_2INT, lowners, rowners, MPI_MAXLOC);CHKERRQ(ierr); 12674eca1733SMichael Lange ierr = PetscSFReduceEnd(migrationSF, MPIU_2INT, lowners, rowners, MPI_MAXLOC);CHKERRQ(ierr); 12684eca1733SMichael Lange ierr = PetscSFBcastBegin(migrationSF, MPIU_2INT, rowners, lowners);CHKERRQ(ierr); 12694eca1733SMichael Lange ierr = PetscSFBcastEnd(migrationSF, MPIU_2INT, rowners, lowners);CHKERRQ(ierr); 12704eca1733SMichael Lange for (p = 0; p < numLeaves; ++p) { 12714eca1733SMichael Lange if (lowners[p].rank < 0 || lowners[p].index < 0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Cell partition corrupt: point not claimed"); 12724eca1733SMichael Lange if (lowners[p].rank != rank) ++numGhostPoints; 12734eca1733SMichael Lange } 12744eca1733SMichael Lange ierr = PetscMalloc1(numGhostPoints, &ghostPoints);CHKERRQ(ierr); 12754eca1733SMichael Lange ierr = PetscMalloc1(numGhostPoints, &remotePoints);CHKERRQ(ierr); 12764eca1733SMichael Lange for (p = 0, gp = 0; p < numLeaves; ++p) { 12774eca1733SMichael Lange if (lowners[p].rank != rank) { 12784eca1733SMichael Lange ghostPoints[gp] = leaves ? leaves[p] : p; 12794eca1733SMichael Lange remotePoints[gp].rank = lowners[p].rank; 12804eca1733SMichael Lange remotePoints[gp].index = lowners[p].index; 12814eca1733SMichael Lange ++gp; 12824eca1733SMichael Lange } 12834eca1733SMichael Lange } 12844eca1733SMichael Lange ierr = PetscFree2(rowners,lowners);CHKERRQ(ierr); 12854eca1733SMichael Lange ierr = PetscSFSetGraph((dmParallel)->sf, pEnd - pStart, numGhostPoints, ghostPoints, PETSC_OWN_POINTER, remotePoints, PETSC_OWN_POINTER);CHKERRQ(ierr); 12864eca1733SMichael Lange ierr = PetscSFSetFromOptions((dmParallel)->sf);CHKERRQ(ierr); 12874eca1733SMichael Lange } 12881cf84007SMatthew G. Knepley { 12891cf84007SMatthew G. Knepley PetscBool useCone, useClosure, useAnchors; 12901cf84007SMatthew G. Knepley 1291b0441da4SMatthew G. Knepley ierr = DMGetBasicAdjacency(dm, &useCone, &useClosure);CHKERRQ(ierr); 1292b0441da4SMatthew G. Knepley ierr = DMSetBasicAdjacency(dmParallel, useCone, useClosure);CHKERRQ(ierr); 12931cf84007SMatthew G. Knepley ierr = DMPlexGetAdjacencyUseAnchors(dm, &useAnchors);CHKERRQ(ierr); 12941cf84007SMatthew G. Knepley ierr = DMPlexSetAdjacencyUseAnchors(dmParallel, useAnchors);CHKERRQ(ierr); 12951cf84007SMatthew G. Knepley } 12964eca1733SMichael Lange ierr = PetscLogEventEnd(DMPLEX_DistributeSF,dm,0,0,0);CHKERRQ(ierr); 12974eca1733SMichael Lange PetscFunctionReturn(0); 12984eca1733SMichael Lange } 12994eca1733SMichael Lange 130098ba2d7fSLawrence Mitchell /*@ 130198ba2d7fSLawrence Mitchell DMPlexSetPartitionBalance - Should distribution of the DM attempt to balance the shared point partition? 130298ba2d7fSLawrence Mitchell 130398ba2d7fSLawrence Mitchell Input Parameters: 130498ba2d7fSLawrence Mitchell + dm - The DMPlex object 130598ba2d7fSLawrence Mitchell - flg - Balance the partition? 130698ba2d7fSLawrence Mitchell 130798ba2d7fSLawrence Mitchell Level: intermediate 130898ba2d7fSLawrence Mitchell 130998ba2d7fSLawrence Mitchell .seealso: DMPlexDistribute(), DMPlexGetPartitionBalance() 131098ba2d7fSLawrence Mitchell @*/ 131198ba2d7fSLawrence Mitchell PetscErrorCode DMPlexSetPartitionBalance(DM dm, PetscBool flg) 131298ba2d7fSLawrence Mitchell { 131398ba2d7fSLawrence Mitchell DM_Plex *mesh = (DM_Plex *)dm->data; 131498ba2d7fSLawrence Mitchell 131598ba2d7fSLawrence Mitchell PetscFunctionBegin; 131698ba2d7fSLawrence Mitchell mesh->partitionBalance = flg; 131798ba2d7fSLawrence Mitchell PetscFunctionReturn(0); 131898ba2d7fSLawrence Mitchell } 131998ba2d7fSLawrence Mitchell 132098ba2d7fSLawrence Mitchell /*@ 132198ba2d7fSLawrence Mitchell DMPlexGetPartitionBalance - Does distribution of the DM attempt to balance the shared point partition? 132298ba2d7fSLawrence Mitchell 132398ba2d7fSLawrence Mitchell Input Parameter: 132498ba2d7fSLawrence Mitchell + dm - The DMPlex object 132598ba2d7fSLawrence Mitchell 132698ba2d7fSLawrence Mitchell Output Parameter: 132798ba2d7fSLawrence Mitchell + flg - Balance the partition? 132898ba2d7fSLawrence Mitchell 132998ba2d7fSLawrence Mitchell Level: intermediate 133098ba2d7fSLawrence Mitchell 133198ba2d7fSLawrence Mitchell .seealso: DMPlexDistribute(), DMPlexSetPartitionBalance() 133298ba2d7fSLawrence Mitchell @*/ 133398ba2d7fSLawrence Mitchell PetscErrorCode DMPlexGetPartitionBalance(DM dm, PetscBool *flg) 133498ba2d7fSLawrence Mitchell { 133598ba2d7fSLawrence Mitchell DM_Plex *mesh = (DM_Plex *)dm->data; 133698ba2d7fSLawrence Mitchell 133798ba2d7fSLawrence Mitchell PetscFunctionBegin; 133898ba2d7fSLawrence Mitchell PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 133998ba2d7fSLawrence Mitchell PetscValidIntPointer(flg, 2); 134098ba2d7fSLawrence Mitchell *flg = mesh->partitionBalance; 134198ba2d7fSLawrence Mitchell PetscFunctionReturn(0); 134298ba2d7fSLawrence Mitchell } 134398ba2d7fSLawrence Mitchell 1344f5bf2dbfSMichael Lange /*@C 1345*a8c5bd36SStefano Zampini DMPlexCreatePointSF - Build a point SF from an SF describing a point migration 1346f5bf2dbfSMichael Lange 1347f5bf2dbfSMichael Lange Input Parameter: 1348f5bf2dbfSMichael Lange + dm - The source DMPlex object 1349f5bf2dbfSMichael Lange . migrationSF - The star forest that describes the parallel point remapping 13501627f6ccSMichael Lange . ownership - Flag causing a vote to determine point ownership 1351f5bf2dbfSMichael Lange 1352f5bf2dbfSMichael Lange Output Parameter: 1353f5bf2dbfSMichael Lange - pointSF - The star forest describing the point overlap in the remapped DM 1354f5bf2dbfSMichael Lange 1355f5bf2dbfSMichael Lange Level: developer 1356f5bf2dbfSMichael Lange 1357f5bf2dbfSMichael Lange .seealso: DMPlexDistribute(), DMPlexDistributeOverlap() 1358f5bf2dbfSMichael Lange @*/ 1359f5bf2dbfSMichael Lange PetscErrorCode DMPlexCreatePointSF(DM dm, PetscSF migrationSF, PetscBool ownership, PetscSF *pointSF) 1360f5bf2dbfSMichael Lange { 136123193802SMatthew G. Knepley PetscMPIInt rank, size; 13621627f6ccSMichael Lange PetscInt p, nroots, nleaves, idx, npointLeaves; 1363f5bf2dbfSMichael Lange PetscInt *pointLocal; 1364f5bf2dbfSMichael Lange const PetscInt *leaves; 1365f5bf2dbfSMichael Lange const PetscSFNode *roots; 1366f5bf2dbfSMichael Lange PetscSFNode *rootNodes, *leafNodes, *pointRemote; 136723193802SMatthew G. Knepley Vec shifts; 1368cae3e4f3SLawrence Mitchell const PetscInt numShifts = 13759; 136923193802SMatthew G. Knepley const PetscScalar *shift = NULL; 137023193802SMatthew G. Knepley const PetscBool shiftDebug = PETSC_FALSE; 137198ba2d7fSLawrence Mitchell PetscBool balance; 1372f5bf2dbfSMichael Lange PetscErrorCode ierr; 1373f5bf2dbfSMichael Lange 1374f5bf2dbfSMichael Lange PetscFunctionBegin; 1375f5bf2dbfSMichael Lange PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 1376f5bf2dbfSMichael Lange ierr = MPI_Comm_rank(PetscObjectComm((PetscObject) dm), &rank);CHKERRQ(ierr); 1377ab0bc224SMatthew G. Knepley ierr = MPI_Comm_size(PetscObjectComm((PetscObject) dm), &size);CHKERRQ(ierr); 137830b0ce1bSStefano Zampini ierr = PetscLogEventBegin(DMPLEX_CreatePointSF,dm,0,0,0);CHKERRQ(ierr); 1379f5bf2dbfSMichael Lange 138098ba2d7fSLawrence Mitchell ierr = DMPlexGetPartitionBalance(dm, &balance);CHKERRQ(ierr); 1381f5bf2dbfSMichael Lange ierr = PetscSFGetGraph(migrationSF, &nroots, &nleaves, &leaves, &roots);CHKERRQ(ierr); 1382f5bf2dbfSMichael Lange ierr = PetscMalloc2(nroots, &rootNodes, nleaves, &leafNodes);CHKERRQ(ierr); 1383f5bf2dbfSMichael Lange if (ownership) { 138423193802SMatthew G. Knepley /* If balancing, we compute a random cyclic shift of the rank for each remote point. That way, the max will evenly distribute among ranks. */ 138598ba2d7fSLawrence Mitchell if (balance) { 138623193802SMatthew G. Knepley PetscRandom r; 138723193802SMatthew G. Knepley 138823193802SMatthew G. Knepley ierr = PetscRandomCreate(PETSC_COMM_SELF, &r);CHKERRQ(ierr); 1389cae3e4f3SLawrence Mitchell ierr = PetscRandomSetInterval(r, 0, 2467*size);CHKERRQ(ierr); 139023193802SMatthew G. Knepley ierr = VecCreate(PETSC_COMM_SELF, &shifts);CHKERRQ(ierr); 139123193802SMatthew G. Knepley ierr = VecSetSizes(shifts, numShifts, numShifts);CHKERRQ(ierr); 139223193802SMatthew G. Knepley ierr = VecSetType(shifts, VECSTANDARD);CHKERRQ(ierr); 139323193802SMatthew G. Knepley ierr = VecSetRandom(shifts, r);CHKERRQ(ierr); 139423193802SMatthew G. Knepley ierr = PetscRandomDestroy(&r);CHKERRQ(ierr); 139523193802SMatthew G. Knepley ierr = VecGetArrayRead(shifts, &shift);CHKERRQ(ierr); 139623193802SMatthew G. Knepley } 139723193802SMatthew G. Knepley 139823193802SMatthew G. Knepley /* Point ownership vote: Process with highest rank owns shared points */ 1399f5bf2dbfSMichael Lange for (p = 0; p < nleaves; ++p) { 140023193802SMatthew G. Knepley if (shiftDebug) { 1401e7bcd635SMatthew G. Knepley ierr = PetscSynchronizedPrintf(PetscObjectComm((PetscObject) dm), "[%d] Point %D RemotePoint %D Shift %D MyRank %D\n", rank, leaves ? leaves[p] : p, roots[p].index, (PetscInt) PetscRealPart(shift[roots[p].index%numShifts]), (rank + (shift ? (PetscInt) PetscRealPart(shift[roots[p].index%numShifts]) : 0))%size);CHKERRQ(ierr); 140223193802SMatthew G. Knepley } 1403f5bf2dbfSMichael Lange /* Either put in a bid or we know we own it */ 1404e7bcd635SMatthew G. Knepley leafNodes[p].rank = (rank + (shift ? (PetscInt) PetscRealPart(shift[roots[p].index%numShifts]) : 0))%size; 140543f7d02bSMichael Lange leafNodes[p].index = p; 1406f5bf2dbfSMichael Lange } 1407f5bf2dbfSMichael Lange for (p = 0; p < nroots; p++) { 14081627f6ccSMichael Lange /* Root must not participate in the reduction, flag so that MAXLOC does not use */ 1409f5bf2dbfSMichael Lange rootNodes[p].rank = -3; 1410f5bf2dbfSMichael Lange rootNodes[p].index = -3; 1411f5bf2dbfSMichael Lange } 1412f5bf2dbfSMichael Lange ierr = PetscSFReduceBegin(migrationSF, MPIU_2INT, leafNodes, rootNodes, MPI_MAXLOC);CHKERRQ(ierr); 1413f5bf2dbfSMichael Lange ierr = PetscSFReduceEnd(migrationSF, MPIU_2INT, leafNodes, rootNodes, MPI_MAXLOC);CHKERRQ(ierr); 141498ba2d7fSLawrence Mitchell if (balance) { 1415c091126eSLawrence Mitchell /* We've voted, now we need to get the rank. When we're balancing the partition, the "rank" in rootNotes is not 1416c091126eSLawrence Mitchell * the rank but rather (rank + random)%size. So we do another reduction, voting the same way, but sending the 1417c091126eSLawrence Mitchell * rank instead of the index. */ 1418c091126eSLawrence Mitchell PetscSFNode *rootRanks = NULL; 1419c091126eSLawrence Mitchell ierr = PetscMalloc1(nroots, &rootRanks);CHKERRQ(ierr); 1420c091126eSLawrence Mitchell for (p = 0; p < nroots; p++) { 1421c091126eSLawrence Mitchell rootRanks[p].rank = -3; 1422c091126eSLawrence Mitchell rootRanks[p].index = -3; 1423c091126eSLawrence Mitchell } 1424c091126eSLawrence Mitchell for (p = 0; p < nleaves; p++) leafNodes[p].index = rank; 1425c091126eSLawrence Mitchell ierr = PetscSFReduceBegin(migrationSF, MPIU_2INT, leafNodes, rootRanks, MPI_MAXLOC);CHKERRQ(ierr); 1426c091126eSLawrence Mitchell ierr = PetscSFReduceEnd(migrationSF, MPIU_2INT, leafNodes, rootRanks, MPI_MAXLOC);CHKERRQ(ierr); 1427c091126eSLawrence Mitchell for (p = 0; p < nroots; p++) rootNodes[p].rank = rootRanks[p].index; 1428c091126eSLawrence Mitchell ierr = PetscFree(rootRanks);CHKERRQ(ierr); 1429c091126eSLawrence Mitchell } 1430f5bf2dbfSMichael Lange } else { 1431f5bf2dbfSMichael Lange for (p = 0; p < nroots; p++) { 1432f5bf2dbfSMichael Lange rootNodes[p].index = -1; 1433f5bf2dbfSMichael Lange rootNodes[p].rank = rank; 1434f5bf2dbfSMichael Lange }; 1435f5bf2dbfSMichael Lange for (p = 0; p < nleaves; p++) { 1436f5bf2dbfSMichael Lange /* Write new local id into old location */ 1437f5bf2dbfSMichael Lange if (roots[p].rank == rank) { 14386462276dSToby Isaac rootNodes[roots[p].index].index = leaves ? leaves[p] : p; 1439f5bf2dbfSMichael Lange } 1440f5bf2dbfSMichael Lange } 1441f5bf2dbfSMichael Lange } 1442f5bf2dbfSMichael Lange ierr = PetscSFBcastBegin(migrationSF, MPIU_2INT, rootNodes, leafNodes);CHKERRQ(ierr); 1443f5bf2dbfSMichael Lange ierr = PetscSFBcastEnd(migrationSF, MPIU_2INT, rootNodes, leafNodes);CHKERRQ(ierr); 1444f5bf2dbfSMichael Lange 144523193802SMatthew G. Knepley for (npointLeaves = 0, p = 0; p < nleaves; p++) { 1446b0e1264bSMatthew G. Knepley if (leafNodes[p].rank != rank) npointLeaves++; 144723193802SMatthew G. Knepley } 14481627f6ccSMichael Lange ierr = PetscMalloc1(npointLeaves, &pointLocal);CHKERRQ(ierr); 14491627f6ccSMichael Lange ierr = PetscMalloc1(npointLeaves, &pointRemote);CHKERRQ(ierr); 1450f5bf2dbfSMichael Lange for (idx = 0, p = 0; p < nleaves; p++) { 1451b0e1264bSMatthew G. Knepley if (leafNodes[p].rank != rank) { 1452f5bf2dbfSMichael Lange pointLocal[idx] = p; 1453f5bf2dbfSMichael Lange pointRemote[idx] = leafNodes[p]; 1454f5bf2dbfSMichael Lange idx++; 1455f5bf2dbfSMichael Lange } 1456f5bf2dbfSMichael Lange } 145723193802SMatthew G. Knepley if (shift) { 145823193802SMatthew G. Knepley ierr = VecRestoreArrayRead(shifts, &shift);CHKERRQ(ierr); 145923193802SMatthew G. Knepley ierr = VecDestroy(&shifts);CHKERRQ(ierr); 146023193802SMatthew G. Knepley } 146123193802SMatthew G. Knepley if (shiftDebug) {ierr = PetscSynchronizedFlush(PetscObjectComm((PetscObject) dm), PETSC_STDOUT);CHKERRQ(ierr);} 1462f5bf2dbfSMichael Lange ierr = PetscSFCreate(PetscObjectComm((PetscObject) dm), pointSF);CHKERRQ(ierr); 14631627f6ccSMichael Lange ierr = PetscSFSetFromOptions(*pointSF);CHKERRQ(ierr); 1464f5bf2dbfSMichael Lange ierr = PetscSFSetGraph(*pointSF, nleaves, npointLeaves, pointLocal, PETSC_OWN_POINTER, pointRemote, PETSC_OWN_POINTER);CHKERRQ(ierr); 1465f5bf2dbfSMichael Lange ierr = PetscFree2(rootNodes, leafNodes);CHKERRQ(ierr); 146630b0ce1bSStefano Zampini ierr = PetscLogEventEnd(DMPLEX_CreatePointSF,dm,0,0,0);CHKERRQ(ierr); 1467f5bf2dbfSMichael Lange PetscFunctionReturn(0); 1468f5bf2dbfSMichael Lange } 1469f5bf2dbfSMichael Lange 147015078cd4SMichael Lange /*@C 147115078cd4SMichael Lange DMPlexMigrate - Migrates internal DM data over the supplied star forest 147215078cd4SMichael Lange 147383655b49SVáclav Hapla Collective on DM and PetscSF 147483655b49SVáclav Hapla 147515078cd4SMichael Lange Input Parameter: 147615078cd4SMichael Lange + dm - The source DMPlex object 14771627f6ccSMichael Lange . sf - The star forest communication context describing the migration pattern 147815078cd4SMichael Lange 147915078cd4SMichael Lange Output Parameter: 148015078cd4SMichael Lange - targetDM - The target DMPlex object 148115078cd4SMichael Lange 1482b9f40539SMichael Lange Level: intermediate 148315078cd4SMichael Lange 148415078cd4SMichael Lange .seealso: DMPlexDistribute(), DMPlexDistributeOverlap() 148515078cd4SMichael Lange @*/ 1486b9f40539SMichael Lange PetscErrorCode DMPlexMigrate(DM dm, PetscSF sf, DM targetDM) 148715078cd4SMichael Lange { 1488b9f40539SMichael Lange MPI_Comm comm; 1489cc1750acSStefano Zampini PetscInt dim, cdim, nroots; 1490b9f40539SMichael Lange PetscSF sfPoint; 149115078cd4SMichael Lange ISLocalToGlobalMapping ltogMigration; 1492ac04eaf7SToby Isaac ISLocalToGlobalMapping ltogOriginal = NULL; 1493b9f40539SMichael Lange PetscBool flg; 149415078cd4SMichael Lange PetscErrorCode ierr; 149515078cd4SMichael Lange 149615078cd4SMichael Lange PetscFunctionBegin; 149715078cd4SMichael Lange PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 14981b858b30SMichael Lange ierr = PetscLogEventBegin(DMPLEX_Migrate, dm, 0, 0, 0);CHKERRQ(ierr); 1499b9f40539SMichael Lange ierr = PetscObjectGetComm((PetscObject) dm, &comm);CHKERRQ(ierr); 150015078cd4SMichael Lange ierr = DMGetDimension(dm, &dim);CHKERRQ(ierr); 150115078cd4SMichael Lange ierr = DMSetDimension(targetDM, dim);CHKERRQ(ierr); 1502cc1750acSStefano Zampini ierr = DMGetCoordinateDim(dm, &cdim);CHKERRQ(ierr); 1503cc1750acSStefano Zampini ierr = DMSetCoordinateDim(targetDM, cdim);CHKERRQ(ierr); 150415078cd4SMichael Lange 1505bfb0467fSMichael Lange /* Check for a one-to-all distribution pattern */ 1506b9f40539SMichael Lange ierr = DMGetPointSF(dm, &sfPoint);CHKERRQ(ierr); 1507b9f40539SMichael Lange ierr = PetscSFGetGraph(sfPoint, &nroots, NULL, NULL, NULL);CHKERRQ(ierr); 1508bfb0467fSMichael Lange if (nroots >= 0) { 1509b9f40539SMichael Lange IS isOriginal; 1510ac04eaf7SToby Isaac PetscInt n, size, nleaves; 1511ac04eaf7SToby Isaac PetscInt *numbering_orig, *numbering_new; 1512367003a6SStefano Zampini 1513b9f40539SMichael Lange /* Get the original point numbering */ 1514b9f40539SMichael Lange ierr = DMPlexCreatePointNumbering(dm, &isOriginal);CHKERRQ(ierr); 1515b9f40539SMichael Lange ierr = ISLocalToGlobalMappingCreateIS(isOriginal, <ogOriginal);CHKERRQ(ierr); 1516b9f40539SMichael Lange ierr = ISLocalToGlobalMappingGetSize(ltogOriginal, &size);CHKERRQ(ierr); 1517b9f40539SMichael Lange ierr = ISLocalToGlobalMappingGetBlockIndices(ltogOriginal, (const PetscInt**)&numbering_orig);CHKERRQ(ierr); 1518b9f40539SMichael Lange /* Convert to positive global numbers */ 1519b9f40539SMichael Lange for (n=0; n<size; n++) {if (numbering_orig[n] < 0) numbering_orig[n] = -(numbering_orig[n]+1);} 1520b9f40539SMichael Lange /* Derive the new local-to-global mapping from the old one */ 1521b9f40539SMichael Lange ierr = PetscSFGetGraph(sf, NULL, &nleaves, NULL, NULL);CHKERRQ(ierr); 1522b9f40539SMichael Lange ierr = PetscMalloc1(nleaves, &numbering_new);CHKERRQ(ierr); 15236e0288c8SStefano Zampini ierr = PetscSFBcastBegin(sf, MPIU_INT, numbering_orig, numbering_new);CHKERRQ(ierr); 15246e0288c8SStefano Zampini ierr = PetscSFBcastEnd(sf, MPIU_INT, numbering_orig, numbering_new);CHKERRQ(ierr); 15256e0288c8SStefano Zampini ierr = ISLocalToGlobalMappingCreate(comm, 1, nleaves, numbering_new, PETSC_OWN_POINTER, <ogMigration);CHKERRQ(ierr); 1526b9f40539SMichael Lange ierr = ISLocalToGlobalMappingRestoreIndices(ltogOriginal, (const PetscInt**)&numbering_orig);CHKERRQ(ierr); 1527b9f40539SMichael Lange ierr = ISDestroy(&isOriginal);CHKERRQ(ierr); 152815078cd4SMichael Lange } else { 1529bfb0467fSMichael Lange /* One-to-all distribution pattern: We can derive LToG from SF */ 153015078cd4SMichael Lange ierr = ISLocalToGlobalMappingCreateSF(sf, 0, <ogMigration);CHKERRQ(ierr); 153115078cd4SMichael Lange } 1532c5929fdfSBarry Smith ierr = PetscOptionsHasName(((PetscObject) dm)->options,((PetscObject) dm)->prefix, "-partition_view", &flg);CHKERRQ(ierr); 1533b9f40539SMichael Lange if (flg) { 1534b9f40539SMichael Lange ierr = PetscPrintf(comm, "Point renumbering for DM migration:\n");CHKERRQ(ierr); 1535b9f40539SMichael Lange ierr = ISLocalToGlobalMappingView(ltogMigration, NULL);CHKERRQ(ierr); 1536b9f40539SMichael Lange } 153715078cd4SMichael Lange /* Migrate DM data to target DM */ 1538ac04eaf7SToby Isaac ierr = DMPlexDistributeCones(dm, sf, ltogOriginal, ltogMigration, targetDM);CHKERRQ(ierr); 153915078cd4SMichael Lange ierr = DMPlexDistributeLabels(dm, sf, targetDM);CHKERRQ(ierr); 15400dc1530dSSander Arens ierr = DMPlexDistributeCoordinates(dm, sf, targetDM);CHKERRQ(ierr); 154115078cd4SMichael Lange ierr = DMPlexDistributeSetupHybrid(dm, sf, ltogMigration, targetDM);CHKERRQ(ierr); 154208633170SToby Isaac ierr = DMPlexDistributeSetupTree(dm, sf, ltogOriginal, ltogMigration, targetDM);CHKERRQ(ierr); 1543ac04eaf7SToby Isaac ierr = ISLocalToGlobalMappingDestroy(<ogOriginal);CHKERRQ(ierr); 1544302440fdSBarry Smith ierr = ISLocalToGlobalMappingDestroy(<ogMigration);CHKERRQ(ierr); 15451b858b30SMichael Lange ierr = PetscLogEventEnd(DMPLEX_Migrate, dm, 0, 0, 0);CHKERRQ(ierr); 154615078cd4SMichael Lange PetscFunctionReturn(0); 154715078cd4SMichael Lange } 154815078cd4SMichael Lange 15493b8f15a2SMatthew G. Knepley /*@C 155070034214SMatthew G. Knepley DMPlexDistribute - Distributes the mesh and any associated sections. 155170034214SMatthew G. Knepley 155283655b49SVáclav Hapla Collective on DM 155370034214SMatthew G. Knepley 155470034214SMatthew G. Knepley Input Parameter: 155570034214SMatthew G. Knepley + dm - The original DMPlex object 155670034214SMatthew G. Knepley - overlap - The overlap of partitions, 0 is the default 155770034214SMatthew G. Knepley 155870034214SMatthew G. Knepley Output Parameter: 1559f4ae5380SJed Brown + sf - The PetscSF used for point distribution, or NULL if not needed 1560f4ae5380SJed Brown - dmParallel - The distributed DMPlex object 156170034214SMatthew G. Knepley 1562f4ae5380SJed Brown Note: If the mesh was not distributed, the output dmParallel will be NULL. 156370034214SMatthew G. Knepley 1564b0441da4SMatthew G. Knepley The user can control the definition of adjacency for the mesh using DMSetAdjacency(). They should choose the combination appropriate for the function 156570034214SMatthew G. Knepley representation on the mesh. 156670034214SMatthew G. Knepley 156770034214SMatthew G. Knepley Level: intermediate 156870034214SMatthew G. Knepley 156970034214SMatthew G. Knepley .keywords: mesh, elements 15706e0288c8SStefano Zampini .seealso: DMPlexCreate(), DMSetAdjacency() 157170034214SMatthew G. Knepley @*/ 157280cf41d5SMatthew G. Knepley PetscErrorCode DMPlexDistribute(DM dm, PetscInt overlap, PetscSF *sf, DM *dmParallel) 157370034214SMatthew G. Knepley { 157470034214SMatthew G. Knepley MPI_Comm comm; 157515078cd4SMichael Lange PetscPartitioner partitioner; 1576f8987ae8SMichael Lange IS cellPart; 1577f8987ae8SMichael Lange PetscSection cellPartSection; 1578cf86098cSMatthew G. Knepley DM dmCoord; 1579f8987ae8SMichael Lange DMLabel lblPartition, lblMigration; 1580874ddda9SLisandro Dalcin PetscSF sfMigration, sfStratified, sfPoint; 158198ba2d7fSLawrence Mitchell PetscBool flg, balance; 1582874ddda9SLisandro Dalcin PetscMPIInt rank, size; 158370034214SMatthew G. Knepley PetscErrorCode ierr; 158470034214SMatthew G. Knepley 158570034214SMatthew G. Knepley PetscFunctionBegin; 158670034214SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 1587d5c515a1SMatthew G. Knepley PetscValidLogicalCollectiveInt(dm, overlap, 2); 1588d5c515a1SMatthew G. Knepley if (sf) PetscValidPointer(sf,3); 1589d5c515a1SMatthew G. Knepley PetscValidPointer(dmParallel,4); 159070034214SMatthew G. Knepley 15910c86c063SLisandro Dalcin if (sf) *sf = NULL; 15920c86c063SLisandro Dalcin *dmParallel = NULL; 159370034214SMatthew G. Knepley ierr = PetscObjectGetComm((PetscObject)dm,&comm);CHKERRQ(ierr); 159470034214SMatthew G. Knepley ierr = MPI_Comm_rank(comm, &rank);CHKERRQ(ierr); 15959852e123SBarry Smith ierr = MPI_Comm_size(comm, &size);CHKERRQ(ierr); 15960c86c063SLisandro Dalcin if (size == 1) PetscFunctionReturn(0); 159770034214SMatthew G. Knepley 15980c86c063SLisandro Dalcin ierr = PetscLogEventBegin(DMPLEX_Distribute,dm,0,0,0);CHKERRQ(ierr); 159915078cd4SMichael Lange /* Create cell partition */ 160067eb269bSLisandro Dalcin ierr = PetscLogEventBegin(DMPLEX_Partition,dm,0,0,0);CHKERRQ(ierr); 160177623264SMatthew G. Knepley ierr = PetscSectionCreate(comm, &cellPartSection);CHKERRQ(ierr); 160215078cd4SMichael Lange ierr = DMPlexGetPartitioner(dm, &partitioner);CHKERRQ(ierr); 160315078cd4SMichael Lange ierr = PetscPartitionerPartition(partitioner, dm, cellPartSection, &cellPart);CHKERRQ(ierr); 160430b0ce1bSStefano Zampini ierr = PetscLogEventBegin(DMPLEX_PartSelf,dm,0,0,0);CHKERRQ(ierr); 1605f8987ae8SMichael Lange { 1606f8987ae8SMichael Lange /* Convert partition to DMLabel */ 1607825f8a23SLisandro Dalcin IS is; 1608825f8a23SLisandro Dalcin PetscHSetI ht; 1609f8987ae8SMichael Lange const PetscInt *points; 16108e330a33SStefano Zampini PetscInt *iranks; 16118e330a33SStefano Zampini PetscInt pStart, pEnd, proc, npoints, poff = 0, nranks; 1612825f8a23SLisandro Dalcin 1613d67d17b1SMatthew G. Knepley ierr = DMLabelCreate(PETSC_COMM_SELF, "Point Partition", &lblPartition);CHKERRQ(ierr); 1614825f8a23SLisandro Dalcin /* Preallocate strata */ 1615825f8a23SLisandro Dalcin ierr = PetscHSetICreate(&ht);CHKERRQ(ierr); 1616825f8a23SLisandro Dalcin ierr = PetscSectionGetChart(cellPartSection, &pStart, &pEnd);CHKERRQ(ierr); 1617825f8a23SLisandro Dalcin for (proc = pStart; proc < pEnd; proc++) { 1618825f8a23SLisandro Dalcin ierr = PetscSectionGetDof(cellPartSection, proc, &npoints);CHKERRQ(ierr); 1619825f8a23SLisandro Dalcin if (npoints) {ierr = PetscHSetIAdd(ht, proc);CHKERRQ(ierr);} 1620825f8a23SLisandro Dalcin } 1621825f8a23SLisandro Dalcin ierr = PetscHSetIGetSize(ht, &nranks);CHKERRQ(ierr); 1622825f8a23SLisandro Dalcin ierr = PetscMalloc1(nranks, &iranks);CHKERRQ(ierr); 1623825f8a23SLisandro Dalcin ierr = PetscHSetIGetElems(ht, &poff, iranks);CHKERRQ(ierr); 1624825f8a23SLisandro Dalcin ierr = PetscHSetIDestroy(&ht);CHKERRQ(ierr); 1625825f8a23SLisandro Dalcin ierr = DMLabelAddStrata(lblPartition, nranks, iranks);CHKERRQ(ierr); 1626825f8a23SLisandro Dalcin ierr = PetscFree(iranks);CHKERRQ(ierr); 1627825f8a23SLisandro Dalcin /* Inline DMPlexPartitionLabelClosure() */ 1628f8987ae8SMichael Lange ierr = ISGetIndices(cellPart, &points);CHKERRQ(ierr); 1629f8987ae8SMichael Lange ierr = PetscSectionGetChart(cellPartSection, &pStart, &pEnd);CHKERRQ(ierr); 1630f8987ae8SMichael Lange for (proc = pStart; proc < pEnd; proc++) { 1631f8987ae8SMichael Lange ierr = PetscSectionGetDof(cellPartSection, proc, &npoints);CHKERRQ(ierr); 1632825f8a23SLisandro Dalcin if (!npoints) continue; 1633825f8a23SLisandro Dalcin ierr = PetscSectionGetOffset(cellPartSection, proc, &poff);CHKERRQ(ierr); 16348e330a33SStefano Zampini ierr = DMPlexClosurePoints_Private(dm, npoints, points+poff, &is);CHKERRQ(ierr); 1635825f8a23SLisandro Dalcin ierr = DMLabelSetStratumIS(lblPartition, proc, is);CHKERRQ(ierr); 1636825f8a23SLisandro Dalcin ierr = ISDestroy(&is);CHKERRQ(ierr); 1637f8987ae8SMichael Lange } 1638f8987ae8SMichael Lange ierr = ISRestoreIndices(cellPart, &points);CHKERRQ(ierr); 1639f8987ae8SMichael Lange } 164030b0ce1bSStefano Zampini ierr = PetscLogEventEnd(DMPLEX_PartSelf,dm,0,0,0);CHKERRQ(ierr); 1641d67d17b1SMatthew G. Knepley ierr = DMLabelCreate(PETSC_COMM_SELF, "Point migration", &lblMigration);CHKERRQ(ierr); 1642874ddda9SLisandro Dalcin ierr = DMPlexPartitionLabelInvert(dm, lblPartition, NULL, lblMigration);CHKERRQ(ierr); 1643302440fdSBarry Smith ierr = DMPlexPartitionLabelCreateSF(dm, lblMigration, &sfMigration);CHKERRQ(ierr); 164443f7d02bSMichael Lange /* Stratify the SF in case we are migrating an already parallel plex */ 164543f7d02bSMichael Lange ierr = DMPlexStratifyMigrationSF(dm, sfMigration, &sfStratified);CHKERRQ(ierr); 164643f7d02bSMichael Lange ierr = PetscSFDestroy(&sfMigration);CHKERRQ(ierr); 164743f7d02bSMichael Lange sfMigration = sfStratified; 164830b0ce1bSStefano Zampini ierr = PetscSFSetUp(sfMigration);CHKERRQ(ierr); 164967eb269bSLisandro Dalcin ierr = PetscLogEventEnd(DMPLEX_Partition,dm,0,0,0);CHKERRQ(ierr); 1650c5929fdfSBarry Smith ierr = PetscOptionsHasName(((PetscObject) dm)->options,((PetscObject) dm)->prefix, "-partition_view", &flg);CHKERRQ(ierr); 165170034214SMatthew G. Knepley if (flg) { 1652*a8c5bd36SStefano Zampini ierr = DMLabelView(lblPartition, PETSC_VIEWER_STDOUT_(comm));CHKERRQ(ierr); 1653*a8c5bd36SStefano Zampini ierr = PetscSFView(sfMigration, PETSC_VIEWER_STDOUT_(comm));CHKERRQ(ierr); 165470034214SMatthew G. Knepley } 1655f8987ae8SMichael Lange 165615078cd4SMichael Lange /* Create non-overlapping parallel DM and migrate internal data */ 165770034214SMatthew G. Knepley ierr = DMPlexCreate(comm, dmParallel);CHKERRQ(ierr); 165870034214SMatthew G. Knepley ierr = PetscObjectSetName((PetscObject) *dmParallel, "Parallel Mesh");CHKERRQ(ierr); 1659b9f40539SMichael Lange ierr = DMPlexMigrate(dm, sfMigration, *dmParallel);CHKERRQ(ierr); 166070034214SMatthew G. Knepley 1661a157612eSMichael Lange /* Build the point SF without overlap */ 166298ba2d7fSLawrence Mitchell ierr = DMPlexGetPartitionBalance(dm, &balance);CHKERRQ(ierr); 166398ba2d7fSLawrence Mitchell ierr = DMPlexSetPartitionBalance(*dmParallel, balance);CHKERRQ(ierr); 16641627f6ccSMichael Lange ierr = DMPlexCreatePointSF(*dmParallel, sfMigration, PETSC_TRUE, &sfPoint);CHKERRQ(ierr); 1665f5bf2dbfSMichael Lange ierr = DMSetPointSF(*dmParallel, sfPoint);CHKERRQ(ierr); 1666cf86098cSMatthew G. Knepley ierr = DMGetCoordinateDM(*dmParallel, &dmCoord);CHKERRQ(ierr); 1667cf86098cSMatthew G. Knepley if (dmCoord) {ierr = DMSetPointSF(dmCoord, sfPoint);CHKERRQ(ierr);} 1668*a8c5bd36SStefano Zampini if (flg) {ierr = PetscSFView(sfPoint, NULL);CHKERRQ(ierr);} 166970034214SMatthew G. Knepley 1670a157612eSMichael Lange if (overlap > 0) { 167115078cd4SMichael Lange DM dmOverlap; 167215078cd4SMichael Lange PetscInt nroots, nleaves; 167315078cd4SMichael Lange PetscSFNode *newRemote; 167415078cd4SMichael Lange const PetscSFNode *oldRemote; 167515078cd4SMichael Lange PetscSF sfOverlap, sfOverlapPoint; 1676524e35f8SStefano Zampini 1677a157612eSMichael Lange /* Add the partition overlap to the distributed DM */ 1678b9f40539SMichael Lange ierr = DMPlexDistributeOverlap(*dmParallel, overlap, &sfOverlap, &dmOverlap);CHKERRQ(ierr); 1679a157612eSMichael Lange ierr = DMDestroy(dmParallel);CHKERRQ(ierr); 1680a157612eSMichael Lange *dmParallel = dmOverlap; 1681c389ea9fSToby Isaac if (flg) { 16823d822a50SMichael Lange ierr = PetscPrintf(comm, "Overlap Migration SF:\n");CHKERRQ(ierr); 168315078cd4SMichael Lange ierr = PetscSFView(sfOverlap, NULL);CHKERRQ(ierr); 1684c389ea9fSToby Isaac } 168543331d4aSMichael Lange 1686f8987ae8SMichael Lange /* Re-map the migration SF to establish the full migration pattern */ 1687f8987ae8SMichael Lange ierr = PetscSFGetGraph(sfMigration, &nroots, NULL, NULL, &oldRemote);CHKERRQ(ierr); 168815078cd4SMichael Lange ierr = PetscSFGetGraph(sfOverlap, NULL, &nleaves, NULL, NULL);CHKERRQ(ierr); 168943331d4aSMichael Lange ierr = PetscMalloc1(nleaves, &newRemote);CHKERRQ(ierr); 169015078cd4SMichael Lange ierr = PetscSFBcastBegin(sfOverlap, MPIU_2INT, oldRemote, newRemote);CHKERRQ(ierr); 169115078cd4SMichael Lange ierr = PetscSFBcastEnd(sfOverlap, MPIU_2INT, oldRemote, newRemote);CHKERRQ(ierr); 169215078cd4SMichael Lange ierr = PetscSFCreate(comm, &sfOverlapPoint);CHKERRQ(ierr); 169315078cd4SMichael Lange ierr = PetscSFSetGraph(sfOverlapPoint, nroots, nleaves, NULL, PETSC_OWN_POINTER, newRemote, PETSC_OWN_POINTER);CHKERRQ(ierr); 169415078cd4SMichael Lange ierr = PetscSFDestroy(&sfOverlap);CHKERRQ(ierr); 1695f8987ae8SMichael Lange ierr = PetscSFDestroy(&sfMigration);CHKERRQ(ierr); 169615078cd4SMichael Lange sfMigration = sfOverlapPoint; 1697c389ea9fSToby Isaac } 1698bf5244c7SMatthew G. Knepley /* Cleanup Partition */ 1699f8987ae8SMichael Lange ierr = DMLabelDestroy(&lblPartition);CHKERRQ(ierr); 1700f8987ae8SMichael Lange ierr = DMLabelDestroy(&lblMigration);CHKERRQ(ierr); 17014eca1733SMichael Lange ierr = PetscSectionDestroy(&cellPartSection);CHKERRQ(ierr); 17024eca1733SMichael Lange ierr = ISDestroy(&cellPart);CHKERRQ(ierr); 1703721cbd76SMatthew G. Knepley /* Copy BC */ 1704a6ba4734SToby Isaac ierr = DMCopyBoundary(dm, *dmParallel);CHKERRQ(ierr); 170566fe0bfeSMatthew G. Knepley /* Create sfNatural */ 170666fe0bfeSMatthew G. Knepley if (dm->useNatural) { 170766fe0bfeSMatthew G. Knepley PetscSection section; 170866fe0bfeSMatthew G. Knepley 1709e87a4003SBarry Smith ierr = DMGetSection(dm, §ion);CHKERRQ(ierr); 17100c1f158bSMatthew G. Knepley ierr = DMPlexCreateGlobalToNaturalSF(*dmParallel, section, sfMigration, &(*dmParallel)->sfNatural);CHKERRQ(ierr); 17110e663481SBlaise Bourdin ierr = DMSetUseNatural(*dmParallel, PETSC_TRUE);CHKERRQ(ierr); 171266fe0bfeSMatthew G. Knepley } 1713721cbd76SMatthew G. Knepley /* Cleanup */ 1714f8987ae8SMichael Lange if (sf) {*sf = sfMigration;} 1715f8987ae8SMichael Lange else {ierr = PetscSFDestroy(&sfMigration);CHKERRQ(ierr);} 1716f5bf2dbfSMichael Lange ierr = PetscSFDestroy(&sfPoint);CHKERRQ(ierr); 171770034214SMatthew G. Knepley ierr = PetscLogEventEnd(DMPLEX_Distribute,dm,0,0,0);CHKERRQ(ierr); 171870034214SMatthew G. Knepley PetscFunctionReturn(0); 171970034214SMatthew G. Knepley } 1720a157612eSMichael Lange 1721a157612eSMichael Lange /*@C 172224cc2ca5SMatthew G. Knepley DMPlexDistributeOverlap - Add partition overlap to a distributed non-overlapping DM. 1723a157612eSMichael Lange 172483655b49SVáclav Hapla Collective on DM 1725a157612eSMichael Lange 1726a157612eSMichael Lange Input Parameter: 1727a157612eSMichael Lange + dm - The non-overlapping distrbuted DMPlex object 17280c86c063SLisandro Dalcin - overlap - The overlap of partitions 1729a157612eSMichael Lange 1730a157612eSMichael Lange Output Parameter: 1731a157612eSMichael Lange + sf - The PetscSF used for point distribution 1732a157612eSMichael Lange - dmOverlap - The overlapping distributed DMPlex object, or NULL 1733a157612eSMichael Lange 1734a157612eSMichael Lange Note: If the mesh was not distributed, the return value is NULL. 1735a157612eSMichael Lange 1736b0441da4SMatthew G. Knepley The user can control the definition of adjacency for the mesh using DMSetAdjacency(). They should choose the combination appropriate for the function 1737a157612eSMichael Lange representation on the mesh. 1738a157612eSMichael Lange 1739a157612eSMichael Lange Level: intermediate 1740a157612eSMichael Lange 1741a157612eSMichael Lange .keywords: mesh, elements 17426e0288c8SStefano Zampini .seealso: DMPlexCreate(), DMSetAdjacency() 1743a157612eSMichael Lange @*/ 1744b9f40539SMichael Lange PetscErrorCode DMPlexDistributeOverlap(DM dm, PetscInt overlap, PetscSF *sf, DM *dmOverlap) 1745a157612eSMichael Lange { 1746a157612eSMichael Lange MPI_Comm comm; 17473567eaeeSMatthew G. Knepley PetscMPIInt size, rank; 1748a157612eSMichael Lange PetscSection rootSection, leafSection; 1749a157612eSMichael Lange IS rootrank, leafrank; 1750cf86098cSMatthew G. Knepley DM dmCoord; 1751a9f1d5b2SMichael Lange DMLabel lblOverlap; 1752f5bf2dbfSMichael Lange PetscSF sfOverlap, sfStratified, sfPoint; 1753a157612eSMichael Lange PetscErrorCode ierr; 1754a157612eSMichael Lange 1755a157612eSMichael Lange PetscFunctionBegin; 1756a157612eSMichael Lange PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 1757a157612eSMichael Lange if (sf) PetscValidPointer(sf, 3); 1758a157612eSMichael Lange PetscValidPointer(dmOverlap, 4); 1759a157612eSMichael Lange 17600c86c063SLisandro Dalcin if (sf) *sf = NULL; 17610c86c063SLisandro Dalcin *dmOverlap = NULL; 1762a157612eSMichael Lange ierr = PetscObjectGetComm((PetscObject)dm,&comm);CHKERRQ(ierr); 17633567eaeeSMatthew G. Knepley ierr = MPI_Comm_size(comm, &size);CHKERRQ(ierr); 1764a157612eSMichael Lange ierr = MPI_Comm_rank(comm, &rank);CHKERRQ(ierr); 17650c86c063SLisandro Dalcin if (size == 1) PetscFunctionReturn(0); 1766a157612eSMichael Lange 17670c86c063SLisandro Dalcin ierr = PetscLogEventBegin(DMPLEX_DistributeOverlap, dm, 0, 0, 0);CHKERRQ(ierr); 1768a157612eSMichael Lange /* Compute point overlap with neighbouring processes on the distributed DM */ 176967eb269bSLisandro Dalcin ierr = PetscLogEventBegin(DMPLEX_Partition,dm,0,0,0);CHKERRQ(ierr); 1770a157612eSMichael Lange ierr = PetscSectionCreate(comm, &rootSection);CHKERRQ(ierr); 1771a157612eSMichael Lange ierr = PetscSectionCreate(comm, &leafSection);CHKERRQ(ierr); 1772a157612eSMichael Lange ierr = DMPlexDistributeOwnership(dm, rootSection, &rootrank, leafSection, &leafrank);CHKERRQ(ierr); 1773a9f1d5b2SMichael Lange ierr = DMPlexCreateOverlap(dm, overlap, rootSection, rootrank, leafSection, leafrank, &lblOverlap);CHKERRQ(ierr); 1774a9f1d5b2SMichael Lange /* Convert overlap label to stratified migration SF */ 1775a9f1d5b2SMichael Lange ierr = DMPlexPartitionLabelCreateSF(dm, lblOverlap, &sfOverlap);CHKERRQ(ierr); 1776a9f1d5b2SMichael Lange ierr = DMPlexStratifyMigrationSF(dm, sfOverlap, &sfStratified);CHKERRQ(ierr); 1777a9f1d5b2SMichael Lange ierr = PetscSFDestroy(&sfOverlap);CHKERRQ(ierr); 1778a9f1d5b2SMichael Lange sfOverlap = sfStratified; 1779a9f1d5b2SMichael Lange ierr = PetscObjectSetName((PetscObject) sfOverlap, "Overlap SF");CHKERRQ(ierr); 1780a9f1d5b2SMichael Lange ierr = PetscSFSetFromOptions(sfOverlap);CHKERRQ(ierr); 1781a9f1d5b2SMichael Lange 178215fff7beSMatthew G. Knepley ierr = PetscSectionDestroy(&rootSection);CHKERRQ(ierr); 178315fff7beSMatthew G. Knepley ierr = PetscSectionDestroy(&leafSection);CHKERRQ(ierr); 178415fff7beSMatthew G. Knepley ierr = ISDestroy(&rootrank);CHKERRQ(ierr); 178515fff7beSMatthew G. Knepley ierr = ISDestroy(&leafrank);CHKERRQ(ierr); 178667eb269bSLisandro Dalcin ierr = PetscLogEventEnd(DMPLEX_Partition,dm,0,0,0);CHKERRQ(ierr); 1787a157612eSMichael Lange 1788a157612eSMichael Lange /* Build the overlapping DM */ 1789a157612eSMichael Lange ierr = DMPlexCreate(comm, dmOverlap);CHKERRQ(ierr); 1790a157612eSMichael Lange ierr = PetscObjectSetName((PetscObject) *dmOverlap, "Parallel Mesh");CHKERRQ(ierr); 1791a9f1d5b2SMichael Lange ierr = DMPlexMigrate(dm, sfOverlap, *dmOverlap);CHKERRQ(ierr); 1792f5bf2dbfSMichael Lange /* Build the new point SF */ 17931627f6ccSMichael Lange ierr = DMPlexCreatePointSF(*dmOverlap, sfOverlap, PETSC_FALSE, &sfPoint);CHKERRQ(ierr); 1794f5bf2dbfSMichael Lange ierr = DMSetPointSF(*dmOverlap, sfPoint);CHKERRQ(ierr); 1795cf86098cSMatthew G. Knepley ierr = DMGetCoordinateDM(*dmOverlap, &dmCoord);CHKERRQ(ierr); 1796cf86098cSMatthew G. Knepley if (dmCoord) {ierr = DMSetPointSF(dmCoord, sfPoint);CHKERRQ(ierr);} 1797f5bf2dbfSMichael Lange ierr = PetscSFDestroy(&sfPoint);CHKERRQ(ierr); 1798a157612eSMichael Lange /* Cleanup overlap partition */ 1799a9f1d5b2SMichael Lange ierr = DMLabelDestroy(&lblOverlap);CHKERRQ(ierr); 1800a9f1d5b2SMichael Lange if (sf) *sf = sfOverlap; 1801a9f1d5b2SMichael Lange else {ierr = PetscSFDestroy(&sfOverlap);CHKERRQ(ierr);} 18021b858b30SMichael Lange ierr = PetscLogEventEnd(DMPLEX_DistributeOverlap, dm, 0, 0, 0);CHKERRQ(ierr); 1803a157612eSMichael Lange PetscFunctionReturn(0); 1804a157612eSMichael Lange } 18056462276dSToby Isaac 18066462276dSToby Isaac /*@C 18076462276dSToby Isaac DMPlexGetGatherDM - Get a copy of the DMPlex that gathers all points on the 18086462276dSToby Isaac root process of the original's communicator. 18096462276dSToby Isaac 181083655b49SVáclav Hapla Collective on DM 181183655b49SVáclav Hapla 18126462276dSToby Isaac Input Parameters: 18136462276dSToby Isaac . dm - the original DMPlex object 18146462276dSToby Isaac 18156462276dSToby Isaac Output Parameters: 1816a13df41bSStefano Zampini + sf - the PetscSF used for point distribution (optional) 1817a13df41bSStefano Zampini - gatherMesh - the gathered DM object, or NULL 18186462276dSToby Isaac 18196462276dSToby Isaac Level: intermediate 18206462276dSToby Isaac 18216462276dSToby Isaac .keywords: mesh 18226462276dSToby Isaac .seealso: DMPlexDistribute(), DMPlexGetRedundantDM() 18236462276dSToby Isaac @*/ 1824a13df41bSStefano Zampini PetscErrorCode DMPlexGetGatherDM(DM dm, PetscSF *sf, DM *gatherMesh) 18256462276dSToby Isaac { 18266462276dSToby Isaac MPI_Comm comm; 18276462276dSToby Isaac PetscMPIInt size; 18286462276dSToby Isaac PetscPartitioner oldPart, gatherPart; 18296462276dSToby Isaac PetscErrorCode ierr; 18306462276dSToby Isaac 18316462276dSToby Isaac PetscFunctionBegin; 18326462276dSToby Isaac PetscValidHeaderSpecific(dm,DM_CLASSID,1); 18330c86c063SLisandro Dalcin PetscValidPointer(gatherMesh,2); 18340c86c063SLisandro Dalcin *gatherMesh = NULL; 1835a13df41bSStefano Zampini if (sf) *sf = NULL; 18366462276dSToby Isaac comm = PetscObjectComm((PetscObject)dm); 18376462276dSToby Isaac ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 18386462276dSToby Isaac if (size == 1) PetscFunctionReturn(0); 18396462276dSToby Isaac ierr = DMPlexGetPartitioner(dm,&oldPart);CHKERRQ(ierr); 18406462276dSToby Isaac ierr = PetscObjectReference((PetscObject)oldPart);CHKERRQ(ierr); 18416462276dSToby Isaac ierr = PetscPartitionerCreate(comm,&gatherPart);CHKERRQ(ierr); 18426462276dSToby Isaac ierr = PetscPartitionerSetType(gatherPart,PETSCPARTITIONERGATHER);CHKERRQ(ierr); 18436462276dSToby Isaac ierr = DMPlexSetPartitioner(dm,gatherPart);CHKERRQ(ierr); 1844a13df41bSStefano Zampini ierr = DMPlexDistribute(dm,0,sf,gatherMesh);CHKERRQ(ierr); 1845a13df41bSStefano Zampini 18466462276dSToby Isaac ierr = DMPlexSetPartitioner(dm,oldPart);CHKERRQ(ierr); 18476462276dSToby Isaac ierr = PetscPartitionerDestroy(&gatherPart);CHKERRQ(ierr); 18486462276dSToby Isaac ierr = PetscPartitionerDestroy(&oldPart);CHKERRQ(ierr); 18496462276dSToby Isaac PetscFunctionReturn(0); 18506462276dSToby Isaac } 18516462276dSToby Isaac 18526462276dSToby Isaac /*@C 18536462276dSToby Isaac DMPlexGetRedundantDM - Get a copy of the DMPlex that is completely copied on each process. 18546462276dSToby Isaac 185583655b49SVáclav Hapla Collective on DM 185683655b49SVáclav Hapla 18576462276dSToby Isaac Input Parameters: 18586462276dSToby Isaac . dm - the original DMPlex object 18596462276dSToby Isaac 18606462276dSToby Isaac Output Parameters: 1861a13df41bSStefano Zampini + sf - the PetscSF used for point distribution (optional) 1862a13df41bSStefano Zampini - redundantMesh - the redundant DM object, or NULL 18636462276dSToby Isaac 18646462276dSToby Isaac Level: intermediate 18656462276dSToby Isaac 18666462276dSToby Isaac .keywords: mesh 18676462276dSToby Isaac .seealso: DMPlexDistribute(), DMPlexGetGatherDM() 18686462276dSToby Isaac @*/ 1869a13df41bSStefano Zampini PetscErrorCode DMPlexGetRedundantDM(DM dm, PetscSF *sf, DM *redundantMesh) 18706462276dSToby Isaac { 18716462276dSToby Isaac MPI_Comm comm; 18726462276dSToby Isaac PetscMPIInt size, rank; 18736462276dSToby Isaac PetscInt pStart, pEnd, p; 18746462276dSToby Isaac PetscInt numPoints = -1; 1875a13df41bSStefano Zampini PetscSF migrationSF, sfPoint, gatherSF; 18766462276dSToby Isaac DM gatherDM, dmCoord; 18776462276dSToby Isaac PetscSFNode *points; 18786462276dSToby Isaac PetscErrorCode ierr; 18796462276dSToby Isaac 18806462276dSToby Isaac PetscFunctionBegin; 18816462276dSToby Isaac PetscValidHeaderSpecific(dm,DM_CLASSID,1); 18820c86c063SLisandro Dalcin PetscValidPointer(redundantMesh,2); 18830c86c063SLisandro Dalcin *redundantMesh = NULL; 18846462276dSToby Isaac comm = PetscObjectComm((PetscObject)dm); 18856462276dSToby Isaac ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 188668dbc166SMatthew G. Knepley if (size == 1) { 188768dbc166SMatthew G. Knepley ierr = PetscObjectReference((PetscObject) dm);CHKERRQ(ierr); 188868dbc166SMatthew G. Knepley *redundantMesh = dm; 1889a13df41bSStefano Zampini if (sf) *sf = NULL; 189068dbc166SMatthew G. Knepley PetscFunctionReturn(0); 189168dbc166SMatthew G. Knepley } 1892a13df41bSStefano Zampini ierr = DMPlexGetGatherDM(dm,&gatherSF,&gatherDM);CHKERRQ(ierr); 18936462276dSToby Isaac if (!gatherDM) PetscFunctionReturn(0); 18946462276dSToby Isaac ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 18956462276dSToby Isaac ierr = DMPlexGetChart(gatherDM,&pStart,&pEnd);CHKERRQ(ierr); 18966462276dSToby Isaac numPoints = pEnd - pStart; 18976462276dSToby Isaac ierr = MPI_Bcast(&numPoints,1,MPIU_INT,0,comm);CHKERRQ(ierr); 18986462276dSToby Isaac ierr = PetscMalloc1(numPoints,&points);CHKERRQ(ierr); 18996462276dSToby Isaac ierr = PetscSFCreate(comm,&migrationSF);CHKERRQ(ierr); 19006462276dSToby Isaac for (p = 0; p < numPoints; p++) { 19016462276dSToby Isaac points[p].index = p; 19026462276dSToby Isaac points[p].rank = 0; 19036462276dSToby Isaac } 19046462276dSToby Isaac ierr = PetscSFSetGraph(migrationSF,pEnd-pStart,numPoints,NULL,PETSC_OWN_POINTER,points,PETSC_OWN_POINTER);CHKERRQ(ierr); 19056462276dSToby Isaac ierr = DMPlexCreate(comm, redundantMesh);CHKERRQ(ierr); 19066462276dSToby Isaac ierr = PetscObjectSetName((PetscObject) *redundantMesh, "Redundant Mesh");CHKERRQ(ierr); 19076462276dSToby Isaac ierr = DMPlexMigrate(gatherDM, migrationSF, *redundantMesh);CHKERRQ(ierr); 19086462276dSToby Isaac ierr = DMPlexCreatePointSF(*redundantMesh, migrationSF, PETSC_FALSE, &sfPoint);CHKERRQ(ierr); 19096462276dSToby Isaac ierr = DMSetPointSF(*redundantMesh, sfPoint);CHKERRQ(ierr); 19106462276dSToby Isaac ierr = DMGetCoordinateDM(*redundantMesh, &dmCoord);CHKERRQ(ierr); 19116462276dSToby Isaac if (dmCoord) {ierr = DMSetPointSF(dmCoord, sfPoint);CHKERRQ(ierr);} 19126462276dSToby Isaac ierr = PetscSFDestroy(&sfPoint);CHKERRQ(ierr); 1913a13df41bSStefano Zampini if (sf) { 1914a13df41bSStefano Zampini PetscSF tsf; 1915a13df41bSStefano Zampini 1916a13df41bSStefano Zampini ierr = PetscSFCompose(gatherSF,migrationSF,&tsf);CHKERRQ(ierr); 1917a13df41bSStefano Zampini ierr = DMPlexStratifyMigrationSF(dm, tsf, sf);CHKERRQ(ierr); 1918a13df41bSStefano Zampini ierr = PetscSFDestroy(&tsf);CHKERRQ(ierr); 1919a13df41bSStefano Zampini } 19206462276dSToby Isaac ierr = PetscSFDestroy(&migrationSF);CHKERRQ(ierr); 1921a13df41bSStefano Zampini ierr = PetscSFDestroy(&gatherSF);CHKERRQ(ierr); 19226462276dSToby Isaac ierr = DMDestroy(&gatherDM);CHKERRQ(ierr); 19236462276dSToby Isaac PetscFunctionReturn(0); 19246462276dSToby Isaac } 1925