1af0996ceSBarry Smith #include <petsc/private/dmpleximpl.h> /*I "petscdmplex.h" I*/ 2c58f1c22SToby Isaac #include <petsc/private/dmlabelimpl.h> /*I "petscdmlabel.h" I*/ 370034214SMatthew G. Knepley 43c1f0c11SLawrence Mitchell /*@C 53c1f0c11SLawrence Mitchell DMPlexSetAdjacencyUser - Define adjacency in the mesh using a user-provided callback 63c1f0c11SLawrence Mitchell 73c1f0c11SLawrence Mitchell Input Parameters: 83c1f0c11SLawrence Mitchell + dm - The DM object 93c1f0c11SLawrence Mitchell . user - The user callback, may be NULL (to clear the callback) 103c1f0c11SLawrence Mitchell - ctx - context for callback evaluation, may be NULL 113c1f0c11SLawrence Mitchell 123c1f0c11SLawrence Mitchell Level: advanced 133c1f0c11SLawrence Mitchell 143c1f0c11SLawrence Mitchell Notes: 153c1f0c11SLawrence Mitchell The caller of DMPlexGetAdjacency may need to arrange that a large enough array is available for the adjacency. 163c1f0c11SLawrence Mitchell 173c1f0c11SLawrence Mitchell Any setting here overrides other configuration of DMPlex adjacency determination. 183c1f0c11SLawrence Mitchell 193c1f0c11SLawrence Mitchell .seealso: DMPlexSetAdjacencyUseCone(), DMPlexSetAdjacencyUseClosure(), DMPlexDistribute(), DMPlexPreallocateOperator(), DMPlexGetAdjacency(), DMPlexGetAdjacencyUser() 203c1f0c11SLawrence Mitchell @*/ 213c1f0c11SLawrence Mitchell PetscErrorCode DMPlexSetAdjacencyUser(DM dm,PetscErrorCode (*user)(DM,PetscInt,PetscInt*,PetscInt[],void*),void *ctx) 223c1f0c11SLawrence Mitchell { 233c1f0c11SLawrence Mitchell DM_Plex *mesh = (DM_Plex *)dm->data; 243c1f0c11SLawrence Mitchell 253c1f0c11SLawrence Mitchell PetscFunctionBegin; 263c1f0c11SLawrence Mitchell PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 273c1f0c11SLawrence Mitchell mesh->useradjacency = user; 283c1f0c11SLawrence Mitchell mesh->useradjacencyctx = ctx; 293c1f0c11SLawrence Mitchell PetscFunctionReturn(0); 303c1f0c11SLawrence Mitchell } 313c1f0c11SLawrence Mitchell 323c1f0c11SLawrence Mitchell /*@C 333c1f0c11SLawrence Mitchell DMPlexGetAdjacencyUser - get the user-defined adjacency callback 343c1f0c11SLawrence Mitchell 353c1f0c11SLawrence Mitchell Input Parameter: 363c1f0c11SLawrence Mitchell . dm - The DM object 373c1f0c11SLawrence Mitchell 383c1f0c11SLawrence Mitchell Output Parameters: 393c1f0c11SLawrence Mitchell - user - The user callback 403c1f0c11SLawrence Mitchell - ctx - context for callback evaluation 413c1f0c11SLawrence Mitchell 423c1f0c11SLawrence Mitchell Level: advanced 433c1f0c11SLawrence Mitchell 443c1f0c11SLawrence Mitchell .seealso: DMPlexSetAdjacencyUseCone(), DMPlexSetAdjacencyUseClosure(), DMPlexDistribute(), DMPlexPreallocateOperator(), DMPlexGetAdjacency(), DMPlexSetAdjacencyUser() 453c1f0c11SLawrence Mitchell @*/ 463c1f0c11SLawrence Mitchell PetscErrorCode DMPlexGetAdjacencyUser(DM dm, PetscErrorCode (**user)(DM,PetscInt,PetscInt*,PetscInt[],void*), void **ctx) 473c1f0c11SLawrence Mitchell { 483c1f0c11SLawrence Mitchell DM_Plex *mesh = (DM_Plex *)dm->data; 493c1f0c11SLawrence Mitchell 503c1f0c11SLawrence Mitchell PetscFunctionBegin; 513c1f0c11SLawrence Mitchell PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 523c1f0c11SLawrence Mitchell if (user) *user = mesh->useradjacency; 533c1f0c11SLawrence Mitchell if (ctx) *ctx = mesh->useradjacencyctx; 543c1f0c11SLawrence Mitchell PetscFunctionReturn(0); 553c1f0c11SLawrence Mitchell } 563c1f0c11SLawrence Mitchell 5770034214SMatthew G. Knepley /*@ 5870034214SMatthew G. Knepley DMPlexSetAdjacencyUseCone - Define adjacency in the mesh using either the cone or the support first 5970034214SMatthew G. Knepley 6070034214SMatthew G. Knepley Input Parameters: 6170034214SMatthew G. Knepley + dm - The DM object 6270034214SMatthew G. Knepley - useCone - Flag to use the cone first 6370034214SMatthew G. Knepley 6470034214SMatthew G. Knepley Level: intermediate 6570034214SMatthew G. Knepley 6670034214SMatthew G. Knepley Notes: 6770034214SMatthew G. Knepley $ FEM: Two points p and q are adjacent if q \in closure(star(p)), useCone = PETSC_FALSE, useClosure = PETSC_TRUE 684b6b44bdSMatthew G. Knepley $ FVM: Two points p and q are adjacent if q \in support(p+cone(p)), useCone = PETSC_TRUE, useClosure = PETSC_FALSE 6970034214SMatthew G. Knepley $ FVM++: Two points p and q are adjacent if q \in star(closure(p)), useCone = PETSC_TRUE, useClosure = PETSC_TRUE 7070034214SMatthew G. Knepley 7170034214SMatthew G. Knepley .seealso: DMPlexGetAdjacencyUseCone(), DMPlexSetAdjacencyUseClosure(), DMPlexGetAdjacencyUseClosure(), DMPlexDistribute(), DMPlexPreallocateOperator() 7270034214SMatthew G. Knepley @*/ 7370034214SMatthew G. Knepley PetscErrorCode DMPlexSetAdjacencyUseCone(DM dm, PetscBool useCone) 7470034214SMatthew G. Knepley { 751cf84007SMatthew G. Knepley PetscDS prob; 761cf84007SMatthew G. Knepley PetscBool useClosure; 771cf84007SMatthew G. Knepley PetscInt Nf; 781cf84007SMatthew G. Knepley PetscErrorCode ierr; 7970034214SMatthew G. Knepley 8070034214SMatthew G. Knepley PetscFunctionBegin; 811cf84007SMatthew G. Knepley ierr = DMGetDS(dm, &prob);CHKERRQ(ierr); 821cf84007SMatthew G. Knepley ierr = PetscDSGetNumFields(prob, &Nf);CHKERRQ(ierr); 8306cc46feSMatthew G. Knepley if (!Nf) { 8406cc46feSMatthew G. Knepley ierr = PetscDSGetAdjacency(prob, PETSC_DEFAULT, NULL, &useClosure);CHKERRQ(ierr); 8506cc46feSMatthew G. Knepley ierr = PetscDSSetAdjacency(prob, PETSC_DEFAULT, useCone, useClosure);CHKERRQ(ierr); 8606cc46feSMatthew G. Knepley } else { 871cf84007SMatthew G. Knepley ierr = PetscDSGetAdjacency(prob, 0, NULL, &useClosure);CHKERRQ(ierr); 881cf84007SMatthew G. Knepley ierr = PetscDSSetAdjacency(prob, 0, useCone, useClosure);CHKERRQ(ierr); 8906cc46feSMatthew G. Knepley } 9070034214SMatthew G. Knepley PetscFunctionReturn(0); 9170034214SMatthew G. Knepley } 9270034214SMatthew G. Knepley 9370034214SMatthew G. Knepley /*@ 9470034214SMatthew G. Knepley DMPlexGetAdjacencyUseCone - Query whether adjacency in the mesh uses the cone or the support first 9570034214SMatthew G. Knepley 9670034214SMatthew G. Knepley Input Parameter: 9770034214SMatthew G. Knepley . dm - The DM object 9870034214SMatthew G. Knepley 9970034214SMatthew G. Knepley Output Parameter: 10070034214SMatthew G. Knepley . useCone - Flag to use the cone first 10170034214SMatthew G. Knepley 10270034214SMatthew G. Knepley Level: intermediate 10370034214SMatthew G. Knepley 10470034214SMatthew G. Knepley Notes: 10570034214SMatthew G. Knepley $ FEM: Two points p and q are adjacent if q \in closure(star(p)), useCone = PETSC_FALSE, useClosure = PETSC_TRUE 1064b6b44bdSMatthew G. Knepley $ FVM: Two points p and q are adjacent if q \in support(p+cone(p)), useCone = PETSC_TRUE, useClosure = PETSC_FALSE 10770034214SMatthew G. Knepley $ FVM++: Two points p and q are adjacent if q \in star(closure(p)), useCone = PETSC_TRUE, useClosure = PETSC_TRUE 10870034214SMatthew G. Knepley 10970034214SMatthew G. Knepley .seealso: DMPlexSetAdjacencyUseCone(), DMPlexSetAdjacencyUseClosure(), DMPlexGetAdjacencyUseClosure(), DMPlexDistribute(), DMPlexPreallocateOperator() 11070034214SMatthew G. Knepley @*/ 11170034214SMatthew G. Knepley PetscErrorCode DMPlexGetAdjacencyUseCone(DM dm, PetscBool *useCone) 11270034214SMatthew G. Knepley { 1131cf84007SMatthew G. Knepley PetscDS prob; 1141cf84007SMatthew G. Knepley PetscInt Nf; 1151cf84007SMatthew G. Knepley PetscErrorCode ierr; 11670034214SMatthew G. Knepley 11770034214SMatthew G. Knepley PetscFunctionBegin; 1181cf84007SMatthew G. Knepley ierr = DMGetDS(dm, &prob);CHKERRQ(ierr); 1191cf84007SMatthew G. Knepley ierr = PetscDSGetNumFields(prob, &Nf);CHKERRQ(ierr); 12006cc46feSMatthew G. Knepley if (!Nf) { 12106cc46feSMatthew G. Knepley ierr = PetscDSGetAdjacency(prob, PETSC_DEFAULT, useCone, NULL);CHKERRQ(ierr); 12206cc46feSMatthew G. Knepley } else { 1231cf84007SMatthew G. Knepley ierr = PetscDSGetAdjacency(prob, 0, useCone, NULL);CHKERRQ(ierr); 12406cc46feSMatthew G. Knepley } 12570034214SMatthew G. Knepley PetscFunctionReturn(0); 12670034214SMatthew G. Knepley } 12770034214SMatthew G. Knepley 12870034214SMatthew G. Knepley /*@ 12970034214SMatthew G. Knepley DMPlexSetAdjacencyUseClosure - Define adjacency in the mesh using the transitive closure 13070034214SMatthew G. Knepley 13170034214SMatthew G. Knepley Input Parameters: 13270034214SMatthew G. Knepley + dm - The DM object 13370034214SMatthew G. Knepley - useClosure - Flag to use the closure 13470034214SMatthew G. Knepley 13570034214SMatthew G. Knepley Level: intermediate 13670034214SMatthew G. Knepley 13770034214SMatthew G. Knepley Notes: 13870034214SMatthew G. Knepley $ FEM: Two points p and q are adjacent if q \in closure(star(p)), useCone = PETSC_FALSE, useClosure = PETSC_TRUE 1394b6b44bdSMatthew G. Knepley $ FVM: Two points p and q are adjacent if q \in support(p+cone(p)), useCone = PETSC_TRUE, useClosure = PETSC_FALSE 14070034214SMatthew G. Knepley $ FVM++: Two points p and q are adjacent if q \in star(closure(p)), useCone = PETSC_TRUE, useClosure = PETSC_TRUE 14170034214SMatthew G. Knepley 14270034214SMatthew G. Knepley .seealso: DMPlexGetAdjacencyUseClosure(), DMPlexSetAdjacencyUseCone(), DMPlexGetAdjacencyUseCone(), DMPlexDistribute(), DMPlexPreallocateOperator() 14370034214SMatthew G. Knepley @*/ 14470034214SMatthew G. Knepley PetscErrorCode DMPlexSetAdjacencyUseClosure(DM dm, PetscBool useClosure) 14570034214SMatthew G. Knepley { 1461cf84007SMatthew G. Knepley PetscDS prob; 1471cf84007SMatthew G. Knepley PetscBool useCone; 1481cf84007SMatthew G. Knepley PetscInt Nf; 1491cf84007SMatthew G. Knepley PetscErrorCode ierr; 15070034214SMatthew G. Knepley 15170034214SMatthew G. Knepley PetscFunctionBegin; 1521cf84007SMatthew G. Knepley ierr = DMGetDS(dm, &prob);CHKERRQ(ierr); 1531cf84007SMatthew G. Knepley ierr = PetscDSGetNumFields(prob, &Nf);CHKERRQ(ierr); 15406cc46feSMatthew G. Knepley if (!Nf) { 15506cc46feSMatthew G. Knepley ierr = PetscDSGetAdjacency(prob, PETSC_DEFAULT, &useCone, NULL);CHKERRQ(ierr); 15606cc46feSMatthew G. Knepley ierr = PetscDSSetAdjacency(prob, PETSC_DEFAULT, useCone, useClosure);CHKERRQ(ierr); 15706cc46feSMatthew G. Knepley } else { 1581cf84007SMatthew G. Knepley ierr = PetscDSGetAdjacency(prob, 0, &useCone, NULL);CHKERRQ(ierr); 1591cf84007SMatthew G. Knepley ierr = PetscDSSetAdjacency(prob, 0, useCone, useClosure);CHKERRQ(ierr); 16006cc46feSMatthew G. Knepley } 16170034214SMatthew G. Knepley PetscFunctionReturn(0); 16270034214SMatthew G. Knepley } 16370034214SMatthew G. Knepley 16470034214SMatthew G. Knepley /*@ 16570034214SMatthew G. Knepley DMPlexGetAdjacencyUseClosure - Query whether adjacency in the mesh uses the transitive closure 16670034214SMatthew G. Knepley 16770034214SMatthew G. Knepley Input Parameter: 16870034214SMatthew G. Knepley . dm - The DM object 16970034214SMatthew G. Knepley 17070034214SMatthew G. Knepley Output Parameter: 17170034214SMatthew G. Knepley . useClosure - Flag to use the closure 17270034214SMatthew G. Knepley 17370034214SMatthew G. Knepley Level: intermediate 17470034214SMatthew G. Knepley 17570034214SMatthew G. Knepley Notes: 17670034214SMatthew G. Knepley $ FEM: Two points p and q are adjacent if q \in closure(star(p)), useCone = PETSC_FALSE, useClosure = PETSC_TRUE 1774b6b44bdSMatthew G. Knepley $ FVM: Two points p and q are adjacent if q \in support(p+cone(p)), useCone = PETSC_TRUE, useClosure = PETSC_FALSE 17870034214SMatthew G. Knepley $ FVM++: Two points p and q are adjacent if q \in star(closure(p)), useCone = PETSC_TRUE, useClosure = PETSC_TRUE 17970034214SMatthew G. Knepley 18070034214SMatthew G. Knepley .seealso: DMPlexSetAdjacencyUseClosure(), DMPlexSetAdjacencyUseCone(), DMPlexGetAdjacencyUseCone(), DMPlexDistribute(), DMPlexPreallocateOperator() 18170034214SMatthew G. Knepley @*/ 18270034214SMatthew G. Knepley PetscErrorCode DMPlexGetAdjacencyUseClosure(DM dm, PetscBool *useClosure) 18370034214SMatthew G. Knepley { 1841cf84007SMatthew G. Knepley PetscDS prob; 1851cf84007SMatthew G. Knepley PetscInt Nf; 1861cf84007SMatthew G. Knepley PetscErrorCode ierr; 18770034214SMatthew G. Knepley 18870034214SMatthew G. Knepley PetscFunctionBegin; 1891cf84007SMatthew G. Knepley ierr = DMGetDS(dm, &prob);CHKERRQ(ierr); 1901cf84007SMatthew G. Knepley ierr = PetscDSGetNumFields(prob, &Nf);CHKERRQ(ierr); 19106cc46feSMatthew G. Knepley if (!Nf) { 19206cc46feSMatthew G. Knepley ierr = PetscDSGetAdjacency(prob, PETSC_DEFAULT, NULL, useClosure);CHKERRQ(ierr); 19306cc46feSMatthew G. Knepley } else { 1941cf84007SMatthew G. Knepley ierr = PetscDSGetAdjacency(prob, 0, NULL, useClosure);CHKERRQ(ierr); 19506cc46feSMatthew G. Knepley } 19670034214SMatthew G. Knepley PetscFunctionReturn(0); 19770034214SMatthew G. Knepley } 19870034214SMatthew G. Knepley 1998b0b4c70SToby Isaac /*@ 200a17985deSToby Isaac DMPlexSetAdjacencyUseAnchors - Define adjacency in the mesh using the point-to-point constraints. 2018b0b4c70SToby Isaac 2028b0b4c70SToby Isaac Input Parameters: 2038b0b4c70SToby Isaac + dm - The DM object 2045b317d89SToby Isaac - useAnchors - Flag to use the constraints. If PETSC_TRUE, then constrained points are omitted from DMPlexGetAdjacency(), and their anchor points appear in their place. 2058b0b4c70SToby Isaac 2068b0b4c70SToby Isaac Level: intermediate 2078b0b4c70SToby Isaac 208a17985deSToby Isaac .seealso: DMPlexGetAdjacencyUseClosure(), DMPlexSetAdjacencyUseCone(), DMPlexGetAdjacencyUseCone(), DMPlexDistribute(), DMPlexPreallocateOperator(), DMPlexSetAnchors() 2098b0b4c70SToby Isaac @*/ 2105b317d89SToby Isaac PetscErrorCode DMPlexSetAdjacencyUseAnchors(DM dm, PetscBool useAnchors) 2118b0b4c70SToby Isaac { 2128b0b4c70SToby Isaac DM_Plex *mesh = (DM_Plex *) dm->data; 2138b0b4c70SToby Isaac 2148b0b4c70SToby Isaac PetscFunctionBegin; 2158b0b4c70SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 2165b317d89SToby Isaac mesh->useAnchors = useAnchors; 2178b0b4c70SToby Isaac PetscFunctionReturn(0); 2188b0b4c70SToby Isaac } 2198b0b4c70SToby Isaac 2208b0b4c70SToby Isaac /*@ 221a17985deSToby Isaac DMPlexGetAdjacencyUseAnchors - Query whether adjacency in the mesh uses the point-to-point constraints. 2228b0b4c70SToby Isaac 2238b0b4c70SToby Isaac Input Parameter: 2248b0b4c70SToby Isaac . dm - The DM object 2258b0b4c70SToby Isaac 2268b0b4c70SToby Isaac Output Parameter: 2275b317d89SToby Isaac . useAnchors - Flag to use the closure. If PETSC_TRUE, then constrained points are omitted from DMPlexGetAdjacency(), and their anchor points appear in their place. 2288b0b4c70SToby Isaac 2298b0b4c70SToby Isaac Level: intermediate 2308b0b4c70SToby Isaac 231a17985deSToby Isaac .seealso: DMPlexSetAdjacencyUseAnchors(), DMPlexSetAdjacencyUseCone(), DMPlexGetAdjacencyUseCone(), DMPlexDistribute(), DMPlexPreallocateOperator(), DMPlexSetAnchors() 2328b0b4c70SToby Isaac @*/ 2335b317d89SToby Isaac PetscErrorCode DMPlexGetAdjacencyUseAnchors(DM dm, PetscBool *useAnchors) 2348b0b4c70SToby Isaac { 2358b0b4c70SToby Isaac DM_Plex *mesh = (DM_Plex *) dm->data; 2368b0b4c70SToby Isaac 2378b0b4c70SToby Isaac PetscFunctionBegin; 2388b0b4c70SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 2395b317d89SToby Isaac PetscValidIntPointer(useAnchors, 2); 2405b317d89SToby Isaac *useAnchors = mesh->useAnchors; 2418b0b4c70SToby Isaac PetscFunctionReturn(0); 2428b0b4c70SToby Isaac } 2438b0b4c70SToby Isaac 24470034214SMatthew G. Knepley static PetscErrorCode DMPlexGetAdjacency_Cone_Internal(DM dm, PetscInt p, PetscInt *adjSize, PetscInt adj[]) 24570034214SMatthew G. Knepley { 24670034214SMatthew G. Knepley const PetscInt *cone = NULL; 24770034214SMatthew G. Knepley PetscInt numAdj = 0, maxAdjSize = *adjSize, coneSize, c; 24870034214SMatthew G. Knepley PetscErrorCode ierr; 24970034214SMatthew G. Knepley 25070034214SMatthew G. Knepley PetscFunctionBeginHot; 25170034214SMatthew G. Knepley ierr = DMPlexGetConeSize(dm, p, &coneSize);CHKERRQ(ierr); 25270034214SMatthew G. Knepley ierr = DMPlexGetCone(dm, p, &cone);CHKERRQ(ierr); 2534b6b44bdSMatthew G. Knepley for (c = 0; c <= coneSize; ++c) { 2544b6b44bdSMatthew G. Knepley const PetscInt point = !c ? p : cone[c-1]; 25570034214SMatthew G. Knepley const PetscInt *support = NULL; 25670034214SMatthew G. Knepley PetscInt supportSize, s, q; 25770034214SMatthew G. Knepley 2584b6b44bdSMatthew G. Knepley ierr = DMPlexGetSupportSize(dm, point, &supportSize);CHKERRQ(ierr); 2594b6b44bdSMatthew G. Knepley ierr = DMPlexGetSupport(dm, point, &support);CHKERRQ(ierr); 26070034214SMatthew G. Knepley for (s = 0; s < supportSize; ++s) { 261527e7439SSatish Balay for (q = 0; q < numAdj || ((void)(adj[numAdj++] = support[s]),0); ++q) { 26270034214SMatthew G. Knepley if (support[s] == adj[q]) break; 26370034214SMatthew G. Knepley } 26470034214SMatthew G. Knepley if (numAdj > maxAdjSize) SETERRQ1(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid mesh exceeded adjacency allocation (%D)", maxAdjSize); 26570034214SMatthew G. Knepley } 26670034214SMatthew G. Knepley } 26770034214SMatthew G. Knepley *adjSize = numAdj; 26870034214SMatthew G. Knepley PetscFunctionReturn(0); 26970034214SMatthew G. Knepley } 27070034214SMatthew G. Knepley 27170034214SMatthew G. Knepley static PetscErrorCode DMPlexGetAdjacency_Support_Internal(DM dm, PetscInt p, PetscInt *adjSize, PetscInt adj[]) 27270034214SMatthew G. Knepley { 27370034214SMatthew G. Knepley const PetscInt *support = NULL; 27470034214SMatthew G. Knepley PetscInt numAdj = 0, maxAdjSize = *adjSize, supportSize, s; 27570034214SMatthew G. Knepley PetscErrorCode ierr; 27670034214SMatthew G. Knepley 27770034214SMatthew G. Knepley PetscFunctionBeginHot; 27870034214SMatthew G. Knepley ierr = DMPlexGetSupportSize(dm, p, &supportSize);CHKERRQ(ierr); 27970034214SMatthew G. Knepley ierr = DMPlexGetSupport(dm, p, &support);CHKERRQ(ierr); 2804b6b44bdSMatthew G. Knepley for (s = 0; s <= supportSize; ++s) { 2814b6b44bdSMatthew G. Knepley const PetscInt point = !s ? p : support[s-1]; 28270034214SMatthew G. Knepley const PetscInt *cone = NULL; 28370034214SMatthew G. Knepley PetscInt coneSize, c, q; 28470034214SMatthew G. Knepley 2854b6b44bdSMatthew G. Knepley ierr = DMPlexGetConeSize(dm, point, &coneSize);CHKERRQ(ierr); 2864b6b44bdSMatthew G. Knepley ierr = DMPlexGetCone(dm, point, &cone);CHKERRQ(ierr); 28770034214SMatthew G. Knepley for (c = 0; c < coneSize; ++c) { 288527e7439SSatish Balay for (q = 0; q < numAdj || ((void)(adj[numAdj++] = cone[c]),0); ++q) { 28970034214SMatthew G. Knepley if (cone[c] == adj[q]) break; 29070034214SMatthew G. Knepley } 29170034214SMatthew G. Knepley if (numAdj > maxAdjSize) SETERRQ1(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid mesh exceeded adjacency allocation (%D)", maxAdjSize); 29270034214SMatthew G. Knepley } 29370034214SMatthew G. Knepley } 29470034214SMatthew G. Knepley *adjSize = numAdj; 29570034214SMatthew G. Knepley PetscFunctionReturn(0); 29670034214SMatthew G. Knepley } 29770034214SMatthew G. Knepley 29870034214SMatthew G. Knepley static PetscErrorCode DMPlexGetAdjacency_Transitive_Internal(DM dm, PetscInt p, PetscBool useClosure, PetscInt *adjSize, PetscInt adj[]) 29970034214SMatthew G. Knepley { 30070034214SMatthew G. Knepley PetscInt *star = NULL; 30170034214SMatthew G. Knepley PetscInt numAdj = 0, maxAdjSize = *adjSize, starSize, s; 30270034214SMatthew G. Knepley PetscErrorCode ierr; 30370034214SMatthew G. Knepley 30470034214SMatthew G. Knepley PetscFunctionBeginHot; 30570034214SMatthew G. Knepley ierr = DMPlexGetTransitiveClosure(dm, p, useClosure, &starSize, &star);CHKERRQ(ierr); 30670034214SMatthew G. Knepley for (s = 0; s < starSize*2; s += 2) { 30770034214SMatthew G. Knepley const PetscInt *closure = NULL; 30870034214SMatthew G. Knepley PetscInt closureSize, c, q; 30970034214SMatthew G. Knepley 31070034214SMatthew G. Knepley ierr = DMPlexGetTransitiveClosure(dm, star[s], (PetscBool)!useClosure, &closureSize, (PetscInt**) &closure);CHKERRQ(ierr); 31170034214SMatthew G. Knepley for (c = 0; c < closureSize*2; c += 2) { 312527e7439SSatish Balay for (q = 0; q < numAdj || ((void)(adj[numAdj++] = closure[c]),0); ++q) { 31370034214SMatthew G. Knepley if (closure[c] == adj[q]) break; 31470034214SMatthew G. Knepley } 31570034214SMatthew G. Knepley if (numAdj > maxAdjSize) SETERRQ1(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid mesh exceeded adjacency allocation (%D)", maxAdjSize); 31670034214SMatthew G. Knepley } 31770034214SMatthew G. Knepley ierr = DMPlexRestoreTransitiveClosure(dm, star[s], (PetscBool)!useClosure, &closureSize, (PetscInt**) &closure);CHKERRQ(ierr); 31870034214SMatthew G. Knepley } 31970034214SMatthew G. Knepley ierr = DMPlexRestoreTransitiveClosure(dm, p, useClosure, &starSize, &star);CHKERRQ(ierr); 32070034214SMatthew G. Knepley *adjSize = numAdj; 32170034214SMatthew G. Knepley PetscFunctionReturn(0); 32270034214SMatthew G. Knepley } 32370034214SMatthew G. Knepley 3245b317d89SToby Isaac PetscErrorCode DMPlexGetAdjacency_Internal(DM dm, PetscInt p, PetscBool useCone, PetscBool useTransitiveClosure, PetscBool useAnchors, PetscInt *adjSize, PetscInt *adj[]) 32570034214SMatthew G. Knepley { 32679bad331SMatthew G. Knepley static PetscInt asiz = 0; 3278b0b4c70SToby Isaac PetscInt maxAnchors = 1; 3288b0b4c70SToby Isaac PetscInt aStart = -1, aEnd = -1; 3298b0b4c70SToby Isaac PetscInt maxAdjSize; 3308b0b4c70SToby Isaac PetscSection aSec = NULL; 3318b0b4c70SToby Isaac IS aIS = NULL; 3328b0b4c70SToby Isaac const PetscInt *anchors; 3333c1f0c11SLawrence Mitchell DM_Plex *mesh = (DM_Plex *)dm->data; 33470034214SMatthew G. Knepley PetscErrorCode ierr; 33570034214SMatthew G. Knepley 33670034214SMatthew G. Knepley PetscFunctionBeginHot; 3375b317d89SToby Isaac if (useAnchors) { 338a17985deSToby Isaac ierr = DMPlexGetAnchors(dm,&aSec,&aIS);CHKERRQ(ierr); 3398b0b4c70SToby Isaac if (aSec) { 3408b0b4c70SToby Isaac ierr = PetscSectionGetMaxDof(aSec,&maxAnchors);CHKERRQ(ierr); 34124c766afSToby Isaac maxAnchors = PetscMax(1,maxAnchors); 3428b0b4c70SToby Isaac ierr = PetscSectionGetChart(aSec,&aStart,&aEnd);CHKERRQ(ierr); 3438b0b4c70SToby Isaac ierr = ISGetIndices(aIS,&anchors);CHKERRQ(ierr); 3448b0b4c70SToby Isaac } 3458b0b4c70SToby Isaac } 34679bad331SMatthew G. Knepley if (!*adj) { 34724c766afSToby Isaac PetscInt depth, coneSeries, supportSeries, maxC, maxS, pStart, pEnd; 34879bad331SMatthew G. Knepley 34924c766afSToby Isaac ierr = DMPlexGetChart(dm, &pStart,&pEnd);CHKERRQ(ierr); 35079bad331SMatthew G. Knepley ierr = DMPlexGetDepth(dm, &depth);CHKERRQ(ierr); 35124c766afSToby Isaac ierr = DMPlexGetMaxSizes(dm, &maxC, &maxS);CHKERRQ(ierr); 35224c766afSToby Isaac coneSeries = (maxC > 1) ? ((PetscPowInt(maxC,depth+1)-1)/(maxC-1)) : depth+1; 35324c766afSToby Isaac supportSeries = (maxS > 1) ? ((PetscPowInt(maxS,depth+1)-1)/(maxS-1)) : depth+1; 35424c766afSToby Isaac asiz = PetscMax(PetscPowInt(maxS,depth)*coneSeries,PetscPowInt(maxC,depth)*supportSeries); 3558b0b4c70SToby Isaac asiz *= maxAnchors; 35624c766afSToby Isaac asiz = PetscMin(asiz,pEnd-pStart); 35779bad331SMatthew G. Knepley ierr = PetscMalloc1(asiz,adj);CHKERRQ(ierr); 35879bad331SMatthew G. Knepley } 35979bad331SMatthew G. Knepley if (*adjSize < 0) *adjSize = asiz; 3608b0b4c70SToby Isaac maxAdjSize = *adjSize; 3613c1f0c11SLawrence Mitchell if (mesh->useradjacency) { 3623c1f0c11SLawrence Mitchell ierr = mesh->useradjacency(dm, p, adjSize, *adj, mesh->useradjacencyctx);CHKERRQ(ierr); 3633c1f0c11SLawrence Mitchell } else if (useTransitiveClosure) { 36479bad331SMatthew G. Knepley ierr = DMPlexGetAdjacency_Transitive_Internal(dm, p, useCone, adjSize, *adj);CHKERRQ(ierr); 36570034214SMatthew G. Knepley } else if (useCone) { 36679bad331SMatthew G. Knepley ierr = DMPlexGetAdjacency_Cone_Internal(dm, p, adjSize, *adj);CHKERRQ(ierr); 36770034214SMatthew G. Knepley } else { 36879bad331SMatthew G. Knepley ierr = DMPlexGetAdjacency_Support_Internal(dm, p, adjSize, *adj);CHKERRQ(ierr); 36970034214SMatthew G. Knepley } 3705b317d89SToby Isaac if (useAnchors && aSec) { 3718b0b4c70SToby Isaac PetscInt origSize = *adjSize; 3728b0b4c70SToby Isaac PetscInt numAdj = origSize; 3738b0b4c70SToby Isaac PetscInt i = 0, j; 3748b0b4c70SToby Isaac PetscInt *orig = *adj; 3758b0b4c70SToby Isaac 3768b0b4c70SToby Isaac while (i < origSize) { 3778b0b4c70SToby Isaac PetscInt p = orig[i]; 3788b0b4c70SToby Isaac PetscInt aDof = 0; 3798b0b4c70SToby Isaac 3808b0b4c70SToby Isaac if (p >= aStart && p < aEnd) { 3818b0b4c70SToby Isaac ierr = PetscSectionGetDof(aSec,p,&aDof);CHKERRQ(ierr); 3828b0b4c70SToby Isaac } 3838b0b4c70SToby Isaac if (aDof) { 3848b0b4c70SToby Isaac PetscInt aOff; 3858b0b4c70SToby Isaac PetscInt s, q; 3868b0b4c70SToby Isaac 3878b0b4c70SToby Isaac for (j = i + 1; j < numAdj; j++) { 3888b0b4c70SToby Isaac orig[j - 1] = orig[j]; 3898b0b4c70SToby Isaac } 3908b0b4c70SToby Isaac origSize--; 3918b0b4c70SToby Isaac numAdj--; 3928b0b4c70SToby Isaac ierr = PetscSectionGetOffset(aSec,p,&aOff);CHKERRQ(ierr); 3938b0b4c70SToby Isaac for (s = 0; s < aDof; ++s) { 394527e7439SSatish Balay for (q = 0; q < numAdj || ((void)(orig[numAdj++] = anchors[aOff+s]),0); ++q) { 3958b0b4c70SToby Isaac if (anchors[aOff+s] == orig[q]) break; 3968b0b4c70SToby Isaac } 3978b0b4c70SToby Isaac if (numAdj > maxAdjSize) SETERRQ1(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid mesh exceeded adjacency allocation (%D)", maxAdjSize); 3988b0b4c70SToby Isaac } 3998b0b4c70SToby Isaac } 4008b0b4c70SToby Isaac else { 4018b0b4c70SToby Isaac i++; 4028b0b4c70SToby Isaac } 4038b0b4c70SToby Isaac } 4048b0b4c70SToby Isaac *adjSize = numAdj; 4058b0b4c70SToby Isaac ierr = ISRestoreIndices(aIS,&anchors);CHKERRQ(ierr); 4068b0b4c70SToby Isaac } 40770034214SMatthew G. Knepley PetscFunctionReturn(0); 40870034214SMatthew G. Knepley } 40970034214SMatthew G. Knepley 41070034214SMatthew G. Knepley /*@ 41170034214SMatthew G. Knepley DMPlexGetAdjacency - Return all points adjacent to the given point 41270034214SMatthew G. Knepley 41370034214SMatthew G. Knepley Input Parameters: 41470034214SMatthew G. Knepley + dm - The DM object 41570034214SMatthew G. Knepley . p - The point 41670034214SMatthew G. Knepley . adjSize - The maximum size of adj if it is non-NULL, or PETSC_DETERMINE 41770034214SMatthew G. Knepley - adj - Either NULL so that the array is allocated, or an existing array with size adjSize 41870034214SMatthew G. Knepley 41970034214SMatthew G. Knepley Output Parameters: 42070034214SMatthew G. Knepley + adjSize - The number of adjacent points 42170034214SMatthew G. Knepley - adj - The adjacent points 42270034214SMatthew G. Knepley 42370034214SMatthew G. Knepley Level: advanced 42470034214SMatthew G. Knepley 42595452b02SPatrick Sanan Notes: 42695452b02SPatrick Sanan The user must PetscFree the adj array if it was not passed in. 42770034214SMatthew G. Knepley 42870034214SMatthew G. Knepley .seealso: DMPlexSetAdjacencyUseCone(), DMPlexSetAdjacencyUseClosure(), DMPlexDistribute(), DMCreateMatrix(), DMPlexPreallocateOperator() 42970034214SMatthew G. Knepley @*/ 43070034214SMatthew G. Knepley PetscErrorCode DMPlexGetAdjacency(DM dm, PetscInt p, PetscInt *adjSize, PetscInt *adj[]) 43170034214SMatthew G. Knepley { 4321cf84007SMatthew G. Knepley PetscBool useCone, useClosure, useAnchors; 43370034214SMatthew G. Knepley PetscErrorCode ierr; 43470034214SMatthew G. Knepley 43570034214SMatthew G. Knepley PetscFunctionBeginHot; 43670034214SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 43770034214SMatthew G. Knepley PetscValidPointer(adjSize,3); 43870034214SMatthew G. Knepley PetscValidPointer(adj,4); 4391cf84007SMatthew G. Knepley ierr = DMPlexGetAdjacencyUseCone(dm, &useCone);CHKERRQ(ierr); 4401cf84007SMatthew G. Knepley ierr = DMPlexGetAdjacencyUseClosure(dm, &useClosure);CHKERRQ(ierr); 4411cf84007SMatthew G. Knepley ierr = DMPlexGetAdjacencyUseAnchors(dm, &useAnchors);CHKERRQ(ierr); 4421cf84007SMatthew G. Knepley ierr = DMPlexGetAdjacency_Internal(dm, p, useCone, useClosure, useAnchors, adjSize, adj);CHKERRQ(ierr); 44370034214SMatthew G. Knepley PetscFunctionReturn(0); 44470034214SMatthew G. Knepley } 44508633170SToby Isaac 446b0a623aaSMatthew G. Knepley /*@ 447b0a623aaSMatthew G. Knepley DMPlexCreateTwoSidedProcessSF - Create an SF which just has process connectivity 448b0a623aaSMatthew G. Knepley 449b0a623aaSMatthew G. Knepley Collective on DM 450b0a623aaSMatthew G. Knepley 451b0a623aaSMatthew G. Knepley Input Parameters: 452b0a623aaSMatthew G. Knepley + dm - The DM 453b0a623aaSMatthew G. Knepley - sfPoint - The PetscSF which encodes point connectivity 454b0a623aaSMatthew G. Knepley 455b0a623aaSMatthew G. Knepley Output Parameters: 456b0a623aaSMatthew G. Knepley + processRanks - A list of process neighbors, or NULL 457b0a623aaSMatthew G. Knepley - sfProcess - An SF encoding the two-sided process connectivity, or NULL 458b0a623aaSMatthew G. Knepley 459b0a623aaSMatthew G. Knepley Level: developer 460b0a623aaSMatthew G. Knepley 461b0a623aaSMatthew G. Knepley .seealso: PetscSFCreate(), DMPlexCreateProcessSF() 462b0a623aaSMatthew G. Knepley @*/ 463b0a623aaSMatthew G. Knepley PetscErrorCode DMPlexCreateTwoSidedProcessSF(DM dm, PetscSF sfPoint, PetscSection rootRankSection, IS rootRanks, PetscSection leafRankSection, IS leafRanks, IS *processRanks, PetscSF *sfProcess) 464b0a623aaSMatthew G. Knepley { 465b0a623aaSMatthew G. Knepley const PetscSFNode *remotePoints; 466b0a623aaSMatthew G. Knepley PetscInt *localPointsNew; 467b0a623aaSMatthew G. Knepley PetscSFNode *remotePointsNew; 468b0a623aaSMatthew G. Knepley const PetscInt *nranks; 469b0a623aaSMatthew G. Knepley PetscInt *ranksNew; 470b0a623aaSMatthew G. Knepley PetscBT neighbors; 471b0a623aaSMatthew G. Knepley PetscInt pStart, pEnd, p, numLeaves, l, numNeighbors, n; 4729852e123SBarry Smith PetscMPIInt size, proc, rank; 473b0a623aaSMatthew G. Knepley PetscErrorCode ierr; 474b0a623aaSMatthew G. Knepley 475b0a623aaSMatthew G. Knepley PetscFunctionBegin; 476b0a623aaSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 477b0a623aaSMatthew G. Knepley PetscValidHeaderSpecific(sfPoint, PETSCSF_CLASSID, 2); 478b0a623aaSMatthew G. Knepley if (processRanks) {PetscValidPointer(processRanks, 3);} 479b0a623aaSMatthew G. Knepley if (sfProcess) {PetscValidPointer(sfProcess, 4);} 4809852e123SBarry Smith ierr = MPI_Comm_size(PetscObjectComm((PetscObject) dm), &size);CHKERRQ(ierr); 481b0a623aaSMatthew G. Knepley ierr = MPI_Comm_rank(PetscObjectComm((PetscObject) dm), &rank);CHKERRQ(ierr); 482b0a623aaSMatthew G. Knepley ierr = PetscSFGetGraph(sfPoint, NULL, &numLeaves, NULL, &remotePoints);CHKERRQ(ierr); 4839852e123SBarry Smith ierr = PetscBTCreate(size, &neighbors);CHKERRQ(ierr); 4849852e123SBarry Smith ierr = PetscBTMemzero(size, neighbors);CHKERRQ(ierr); 485b0a623aaSMatthew G. Knepley /* Compute root-to-leaf process connectivity */ 486b0a623aaSMatthew G. Knepley ierr = PetscSectionGetChart(rootRankSection, &pStart, &pEnd);CHKERRQ(ierr); 487b0a623aaSMatthew G. Knepley ierr = ISGetIndices(rootRanks, &nranks);CHKERRQ(ierr); 488b0a623aaSMatthew G. Knepley for (p = pStart; p < pEnd; ++p) { 489b0a623aaSMatthew G. Knepley PetscInt ndof, noff, n; 490b0a623aaSMatthew G. Knepley 491b0a623aaSMatthew G. Knepley ierr = PetscSectionGetDof(rootRankSection, p, &ndof);CHKERRQ(ierr); 492b0a623aaSMatthew G. Knepley ierr = PetscSectionGetOffset(rootRankSection, p, &noff);CHKERRQ(ierr); 493302440fdSBarry Smith for (n = 0; n < ndof; ++n) {ierr = PetscBTSet(neighbors, nranks[noff+n]);CHKERRQ(ierr);} 494b0a623aaSMatthew G. Knepley } 495b0a623aaSMatthew G. Knepley ierr = ISRestoreIndices(rootRanks, &nranks);CHKERRQ(ierr); 496b0a623aaSMatthew G. Knepley /* Compute leaf-to-neighbor process connectivity */ 497b0a623aaSMatthew G. Knepley ierr = PetscSectionGetChart(leafRankSection, &pStart, &pEnd);CHKERRQ(ierr); 498b0a623aaSMatthew G. Knepley ierr = ISGetIndices(leafRanks, &nranks);CHKERRQ(ierr); 499b0a623aaSMatthew G. Knepley for (p = pStart; p < pEnd; ++p) { 500b0a623aaSMatthew G. Knepley PetscInt ndof, noff, n; 501b0a623aaSMatthew G. Knepley 502b0a623aaSMatthew G. Knepley ierr = PetscSectionGetDof(leafRankSection, p, &ndof);CHKERRQ(ierr); 503b0a623aaSMatthew G. Knepley ierr = PetscSectionGetOffset(leafRankSection, p, &noff);CHKERRQ(ierr); 504302440fdSBarry Smith for (n = 0; n < ndof; ++n) {ierr = PetscBTSet(neighbors, nranks[noff+n]);CHKERRQ(ierr);} 505b0a623aaSMatthew G. Knepley } 506b0a623aaSMatthew G. Knepley ierr = ISRestoreIndices(leafRanks, &nranks);CHKERRQ(ierr); 507b0a623aaSMatthew G. Knepley /* Compute leaf-to-root process connectivity */ 508b0a623aaSMatthew G. Knepley for (l = 0; l < numLeaves; ++l) {PetscBTSet(neighbors, remotePoints[l].rank);} 509b0a623aaSMatthew G. Knepley /* Calculate edges */ 510b0a623aaSMatthew G. Knepley PetscBTClear(neighbors, rank); 5119852e123SBarry Smith for(proc = 0, numNeighbors = 0; proc < size; ++proc) {if (PetscBTLookup(neighbors, proc)) ++numNeighbors;} 512b0a623aaSMatthew G. Knepley ierr = PetscMalloc1(numNeighbors, &ranksNew);CHKERRQ(ierr); 513b0a623aaSMatthew G. Knepley ierr = PetscMalloc1(numNeighbors, &localPointsNew);CHKERRQ(ierr); 514b0a623aaSMatthew G. Knepley ierr = PetscMalloc1(numNeighbors, &remotePointsNew);CHKERRQ(ierr); 5159852e123SBarry Smith for(proc = 0, n = 0; proc < size; ++proc) { 516b0a623aaSMatthew G. Knepley if (PetscBTLookup(neighbors, proc)) { 517b0a623aaSMatthew G. Knepley ranksNew[n] = proc; 518b0a623aaSMatthew G. Knepley localPointsNew[n] = proc; 519b0a623aaSMatthew G. Knepley remotePointsNew[n].index = rank; 520b0a623aaSMatthew G. Knepley remotePointsNew[n].rank = proc; 521b0a623aaSMatthew G. Knepley ++n; 522b0a623aaSMatthew G. Knepley } 523b0a623aaSMatthew G. Knepley } 524b0a623aaSMatthew G. Knepley ierr = PetscBTDestroy(&neighbors);CHKERRQ(ierr); 525b0a623aaSMatthew G. Knepley if (processRanks) {ierr = ISCreateGeneral(PetscObjectComm((PetscObject)dm), numNeighbors, ranksNew, PETSC_OWN_POINTER, processRanks);CHKERRQ(ierr);} 526b0a623aaSMatthew G. Knepley else {ierr = PetscFree(ranksNew);CHKERRQ(ierr);} 527b0a623aaSMatthew G. Knepley if (sfProcess) { 528b0a623aaSMatthew G. Knepley ierr = PetscSFCreate(PetscObjectComm((PetscObject)dm), sfProcess);CHKERRQ(ierr); 529b0a623aaSMatthew G. Knepley ierr = PetscObjectSetName((PetscObject) *sfProcess, "Two-Sided Process SF");CHKERRQ(ierr); 530b0a623aaSMatthew G. Knepley ierr = PetscSFSetFromOptions(*sfProcess);CHKERRQ(ierr); 5319852e123SBarry Smith ierr = PetscSFSetGraph(*sfProcess, size, numNeighbors, localPointsNew, PETSC_OWN_POINTER, remotePointsNew, PETSC_OWN_POINTER);CHKERRQ(ierr); 532b0a623aaSMatthew G. Knepley } 533b0a623aaSMatthew G. Knepley PetscFunctionReturn(0); 534b0a623aaSMatthew G. Knepley } 535b0a623aaSMatthew G. Knepley 536b0a623aaSMatthew G. Knepley /*@ 537b0a623aaSMatthew G. Knepley DMPlexDistributeOwnership - Compute owner information for shared points. This basically gets two-sided for an SF. 538b0a623aaSMatthew G. Knepley 539b0a623aaSMatthew G. Knepley Collective on DM 540b0a623aaSMatthew G. Knepley 541b0a623aaSMatthew G. Knepley Input Parameter: 542b0a623aaSMatthew G. Knepley . dm - The DM 543b0a623aaSMatthew G. Knepley 544b0a623aaSMatthew G. Knepley Output Parameters: 545b0a623aaSMatthew G. Knepley + rootSection - The number of leaves for a given root point 546b0a623aaSMatthew G. Knepley . rootrank - The rank of each edge into the root point 547b0a623aaSMatthew G. Knepley . leafSection - The number of processes sharing a given leaf point 548b0a623aaSMatthew G. Knepley - leafrank - The rank of each process sharing a leaf point 549b0a623aaSMatthew G. Knepley 550b0a623aaSMatthew G. Knepley Level: developer 551b0a623aaSMatthew G. Knepley 552b0a623aaSMatthew G. Knepley .seealso: DMPlexCreateOverlap() 553b0a623aaSMatthew G. Knepley @*/ 554b0a623aaSMatthew G. Knepley PetscErrorCode DMPlexDistributeOwnership(DM dm, PetscSection rootSection, IS *rootrank, PetscSection leafSection, IS *leafrank) 555b0a623aaSMatthew G. Knepley { 556b0a623aaSMatthew G. Knepley MPI_Comm comm; 557b0a623aaSMatthew G. Knepley PetscSF sfPoint; 558b0a623aaSMatthew G. Knepley const PetscInt *rootdegree; 559b0a623aaSMatthew G. Knepley PetscInt *myrank, *remoterank; 560b0a623aaSMatthew G. Knepley PetscInt pStart, pEnd, p, nedges; 561b0a623aaSMatthew G. Knepley PetscMPIInt rank; 562b0a623aaSMatthew G. Knepley PetscErrorCode ierr; 563b0a623aaSMatthew G. Knepley 564b0a623aaSMatthew G. Knepley PetscFunctionBegin; 565b0a623aaSMatthew G. Knepley ierr = PetscObjectGetComm((PetscObject) dm, &comm);CHKERRQ(ierr); 566b0a623aaSMatthew G. Knepley ierr = MPI_Comm_rank(comm, &rank);CHKERRQ(ierr); 567b0a623aaSMatthew G. Knepley ierr = DMPlexGetChart(dm, &pStart, &pEnd);CHKERRQ(ierr); 568b0a623aaSMatthew G. Knepley ierr = DMGetPointSF(dm, &sfPoint);CHKERRQ(ierr); 569b0a623aaSMatthew G. Knepley /* Compute number of leaves for each root */ 570b0a623aaSMatthew G. Knepley ierr = PetscObjectSetName((PetscObject) rootSection, "Root Section");CHKERRQ(ierr); 571b0a623aaSMatthew G. Knepley ierr = PetscSectionSetChart(rootSection, pStart, pEnd);CHKERRQ(ierr); 572b0a623aaSMatthew G. Knepley ierr = PetscSFComputeDegreeBegin(sfPoint, &rootdegree);CHKERRQ(ierr); 573b0a623aaSMatthew G. Knepley ierr = PetscSFComputeDegreeEnd(sfPoint, &rootdegree);CHKERRQ(ierr); 574b0a623aaSMatthew G. Knepley for (p = pStart; p < pEnd; ++p) {ierr = PetscSectionSetDof(rootSection, p, rootdegree[p-pStart]);CHKERRQ(ierr);} 575b0a623aaSMatthew G. Knepley ierr = PetscSectionSetUp(rootSection);CHKERRQ(ierr); 576b0a623aaSMatthew G. Knepley /* Gather rank of each leaf to root */ 577b0a623aaSMatthew G. Knepley ierr = PetscSectionGetStorageSize(rootSection, &nedges);CHKERRQ(ierr); 578b0a623aaSMatthew G. Knepley ierr = PetscMalloc1(pEnd-pStart, &myrank);CHKERRQ(ierr); 579b0a623aaSMatthew G. Knepley ierr = PetscMalloc1(nedges, &remoterank);CHKERRQ(ierr); 580b0a623aaSMatthew G. Knepley for (p = 0; p < pEnd-pStart; ++p) myrank[p] = rank; 581b0a623aaSMatthew G. Knepley ierr = PetscSFGatherBegin(sfPoint, MPIU_INT, myrank, remoterank);CHKERRQ(ierr); 582b0a623aaSMatthew G. Knepley ierr = PetscSFGatherEnd(sfPoint, MPIU_INT, myrank, remoterank);CHKERRQ(ierr); 583b0a623aaSMatthew G. Knepley ierr = PetscFree(myrank);CHKERRQ(ierr); 584b0a623aaSMatthew G. Knepley ierr = ISCreateGeneral(comm, nedges, remoterank, PETSC_OWN_POINTER, rootrank);CHKERRQ(ierr); 585b0a623aaSMatthew G. Knepley /* Distribute remote ranks to leaves */ 586b0a623aaSMatthew G. Knepley ierr = PetscObjectSetName((PetscObject) leafSection, "Leaf Section");CHKERRQ(ierr); 587b0a623aaSMatthew G. Knepley ierr = DMPlexDistributeFieldIS(dm, sfPoint, rootSection, *rootrank, leafSection, leafrank);CHKERRQ(ierr); 588b0a623aaSMatthew G. Knepley PetscFunctionReturn(0); 589b0a623aaSMatthew G. Knepley } 590b0a623aaSMatthew G. Knepley 591278397a0SMatthew G. Knepley /*@C 592b0a623aaSMatthew G. Knepley DMPlexCreateOverlap - Compute owner information for shared points. This basically gets two-sided for an SF. 593b0a623aaSMatthew G. Knepley 594b0a623aaSMatthew G. Knepley Collective on DM 595b0a623aaSMatthew G. Knepley 596b0a623aaSMatthew G. Knepley Input Parameters: 597b0a623aaSMatthew G. Knepley + dm - The DM 59824d039d7SMichael Lange . levels - Number of overlap levels 599b0a623aaSMatthew G. Knepley . rootSection - The number of leaves for a given root point 600b0a623aaSMatthew G. Knepley . rootrank - The rank of each edge into the root point 601b0a623aaSMatthew G. Knepley . leafSection - The number of processes sharing a given leaf point 602b0a623aaSMatthew G. Knepley - leafrank - The rank of each process sharing a leaf point 603b0a623aaSMatthew G. Knepley 604b0a623aaSMatthew G. Knepley Output Parameters: 605a9f1d5b2SMichael Lange + ovLabel - DMLabel containing remote overlap contributions as point/rank pairings 606b0a623aaSMatthew G. Knepley 607b0a623aaSMatthew G. Knepley Level: developer 608b0a623aaSMatthew G. Knepley 6091fd9873aSMichael Lange .seealso: DMPlexDistributeOwnership(), DMPlexDistribute() 610b0a623aaSMatthew G. Knepley @*/ 611a9f1d5b2SMichael Lange PetscErrorCode DMPlexCreateOverlap(DM dm, PetscInt levels, PetscSection rootSection, IS rootrank, PetscSection leafSection, IS leafrank, DMLabel *ovLabel) 612b0a623aaSMatthew G. Knepley { 613e540f424SMichael Lange MPI_Comm comm; 614b0a623aaSMatthew G. Knepley DMLabel ovAdjByRank; /* A DMLabel containing all points adjacent to shared points, separated by rank (value in label) */ 615b0a623aaSMatthew G. Knepley PetscSF sfPoint, sfProc; 616b0a623aaSMatthew G. Knepley const PetscSFNode *remote; 617b0a623aaSMatthew G. Knepley const PetscInt *local; 6181fd9873aSMichael Lange const PetscInt *nrank, *rrank; 619b0a623aaSMatthew G. Knepley PetscInt *adj = NULL; 6201fd9873aSMichael Lange PetscInt pStart, pEnd, p, sStart, sEnd, nleaves, l; 6219852e123SBarry Smith PetscMPIInt rank, size; 62226a7d390SMatthew G. Knepley PetscBool useCone, useClosure, flg; 623b0a623aaSMatthew G. Knepley PetscErrorCode ierr; 624b0a623aaSMatthew G. Knepley 625b0a623aaSMatthew G. Knepley PetscFunctionBegin; 626e540f424SMichael Lange ierr = PetscObjectGetComm((PetscObject) dm, &comm);CHKERRQ(ierr); 6279852e123SBarry Smith ierr = MPI_Comm_size(comm, &size);CHKERRQ(ierr); 628e540f424SMichael Lange ierr = MPI_Comm_rank(comm, &rank);CHKERRQ(ierr); 629b0a623aaSMatthew G. Knepley ierr = DMGetPointSF(dm, &sfPoint);CHKERRQ(ierr); 630b0a623aaSMatthew G. Knepley ierr = DMPlexGetChart(dm, &pStart, &pEnd);CHKERRQ(ierr); 631b0a623aaSMatthew G. Knepley ierr = PetscSectionGetChart(leafSection, &sStart, &sEnd);CHKERRQ(ierr); 632b0a623aaSMatthew G. Knepley ierr = PetscSFGetGraph(sfPoint, NULL, &nleaves, &local, &remote);CHKERRQ(ierr); 633b0a623aaSMatthew G. Knepley ierr = DMLabelCreate("Overlap adjacency", &ovAdjByRank);CHKERRQ(ierr); 634b0a623aaSMatthew G. Knepley /* Handle leaves: shared with the root point */ 635b0a623aaSMatthew G. Knepley for (l = 0; l < nleaves; ++l) { 636b0a623aaSMatthew G. Knepley PetscInt adjSize = PETSC_DETERMINE, a; 637b0a623aaSMatthew G. Knepley 638b0a623aaSMatthew G. Knepley ierr = DMPlexGetAdjacency(dm, local[l], &adjSize, &adj);CHKERRQ(ierr); 639b0a623aaSMatthew G. Knepley for (a = 0; a < adjSize; ++a) {ierr = DMLabelSetValue(ovAdjByRank, adj[a], remote[l].rank);CHKERRQ(ierr);} 640b0a623aaSMatthew G. Knepley } 641b0a623aaSMatthew G. Knepley ierr = ISGetIndices(rootrank, &rrank);CHKERRQ(ierr); 642b0a623aaSMatthew G. Knepley ierr = ISGetIndices(leafrank, &nrank);CHKERRQ(ierr); 643b0a623aaSMatthew G. Knepley /* Handle roots */ 644b0a623aaSMatthew G. Knepley for (p = pStart; p < pEnd; ++p) { 645b0a623aaSMatthew G. Knepley PetscInt adjSize = PETSC_DETERMINE, neighbors = 0, noff, n, a; 646b0a623aaSMatthew G. Knepley 647b0a623aaSMatthew G. Knepley if ((p >= sStart) && (p < sEnd)) { 648b0a623aaSMatthew G. Knepley /* Some leaves share a root with other leaves on different processes */ 649b0a623aaSMatthew G. Knepley ierr = PetscSectionGetDof(leafSection, p, &neighbors);CHKERRQ(ierr); 650b0a623aaSMatthew G. Knepley if (neighbors) { 651b0a623aaSMatthew G. Knepley ierr = PetscSectionGetOffset(leafSection, p, &noff);CHKERRQ(ierr); 652b0a623aaSMatthew G. Knepley ierr = DMPlexGetAdjacency(dm, p, &adjSize, &adj);CHKERRQ(ierr); 653b0a623aaSMatthew G. Knepley for (n = 0; n < neighbors; ++n) { 654b0a623aaSMatthew G. Knepley const PetscInt remoteRank = nrank[noff+n]; 655b0a623aaSMatthew G. Knepley 656b0a623aaSMatthew G. Knepley if (remoteRank == rank) continue; 657b0a623aaSMatthew G. Knepley for (a = 0; a < adjSize; ++a) {ierr = DMLabelSetValue(ovAdjByRank, adj[a], remoteRank);CHKERRQ(ierr);} 658b0a623aaSMatthew G. Knepley } 659b0a623aaSMatthew G. Knepley } 660b0a623aaSMatthew G. Knepley } 661b0a623aaSMatthew G. Knepley /* Roots are shared with leaves */ 662b0a623aaSMatthew G. Knepley ierr = PetscSectionGetDof(rootSection, p, &neighbors);CHKERRQ(ierr); 663b0a623aaSMatthew G. Knepley if (!neighbors) continue; 664b0a623aaSMatthew G. Knepley ierr = PetscSectionGetOffset(rootSection, p, &noff);CHKERRQ(ierr); 665b0a623aaSMatthew G. Knepley ierr = DMPlexGetAdjacency(dm, p, &adjSize, &adj);CHKERRQ(ierr); 666b0a623aaSMatthew G. Knepley for (n = 0; n < neighbors; ++n) { 667b0a623aaSMatthew G. Knepley const PetscInt remoteRank = rrank[noff+n]; 668b0a623aaSMatthew G. Knepley 669b0a623aaSMatthew G. Knepley if (remoteRank == rank) continue; 670b0a623aaSMatthew G. Knepley for (a = 0; a < adjSize; ++a) {ierr = DMLabelSetValue(ovAdjByRank, adj[a], remoteRank);CHKERRQ(ierr);} 671b0a623aaSMatthew G. Knepley } 672b0a623aaSMatthew G. Knepley } 673b0a623aaSMatthew G. Knepley ierr = PetscFree(adj);CHKERRQ(ierr); 674b0a623aaSMatthew G. Knepley ierr = ISRestoreIndices(rootrank, &rrank);CHKERRQ(ierr); 675b0a623aaSMatthew G. Knepley ierr = ISRestoreIndices(leafrank, &nrank);CHKERRQ(ierr); 67624d039d7SMichael Lange /* Add additional overlap levels */ 677be200f8dSMichael Lange for (l = 1; l < levels; l++) { 678be200f8dSMichael Lange /* Propagate point donations over SF to capture remote connections */ 679be200f8dSMichael Lange ierr = DMPlexPartitionLabelPropagate(dm, ovAdjByRank);CHKERRQ(ierr); 680be200f8dSMichael Lange /* Add next level of point donations to the label */ 681be200f8dSMichael Lange ierr = DMPlexPartitionLabelAdjacency(dm, ovAdjByRank);CHKERRQ(ierr); 682be200f8dSMichael Lange } 68326a7d390SMatthew G. Knepley /* We require the closure in the overlap */ 68426a7d390SMatthew G. Knepley ierr = DMPlexGetAdjacencyUseCone(dm, &useCone);CHKERRQ(ierr); 68526a7d390SMatthew G. Knepley ierr = DMPlexGetAdjacencyUseClosure(dm, &useClosure);CHKERRQ(ierr); 68626a7d390SMatthew G. Knepley if (useCone || !useClosure) { 6875abbe4feSMichael Lange ierr = DMPlexPartitionLabelClosure(dm, ovAdjByRank);CHKERRQ(ierr); 68826a7d390SMatthew G. Knepley } 689c5929fdfSBarry Smith ierr = PetscOptionsHasName(((PetscObject) dm)->options,((PetscObject) dm)->prefix, "-overlap_view", &flg);CHKERRQ(ierr); 690e540f424SMichael Lange if (flg) { 691b0a623aaSMatthew G. Knepley ierr = DMLabelView(ovAdjByRank, PETSC_VIEWER_STDOUT_WORLD);CHKERRQ(ierr); 692b0a623aaSMatthew G. Knepley } 69371a8c5fcSMichael Lange /* Make global process SF and invert sender to receiver label */ 69471a8c5fcSMichael Lange { 69571a8c5fcSMichael Lange /* Build a global process SF */ 69671a8c5fcSMichael Lange PetscSFNode *remoteProc; 6979852e123SBarry Smith ierr = PetscMalloc1(size, &remoteProc);CHKERRQ(ierr); 6989852e123SBarry Smith for (p = 0; p < size; ++p) { 69971a8c5fcSMichael Lange remoteProc[p].rank = p; 70071a8c5fcSMichael Lange remoteProc[p].index = rank; 70171a8c5fcSMichael Lange } 70271a8c5fcSMichael Lange ierr = PetscSFCreate(comm, &sfProc);CHKERRQ(ierr); 70371a8c5fcSMichael Lange ierr = PetscObjectSetName((PetscObject) sfProc, "Process SF");CHKERRQ(ierr); 7049852e123SBarry Smith ierr = PetscSFSetGraph(sfProc, size, size, NULL, PETSC_OWN_POINTER, remoteProc, PETSC_OWN_POINTER);CHKERRQ(ierr); 70571a8c5fcSMichael Lange } 706a9f1d5b2SMichael Lange ierr = DMLabelCreate("Overlap label", ovLabel);CHKERRQ(ierr); 707a9f1d5b2SMichael Lange ierr = DMPlexPartitionLabelInvert(dm, ovAdjByRank, sfProc, *ovLabel);CHKERRQ(ierr); 708a9f1d5b2SMichael Lange /* Add owned points, except for shared local points */ 709a9f1d5b2SMichael Lange for (p = pStart; p < pEnd; ++p) {ierr = DMLabelSetValue(*ovLabel, p, rank);CHKERRQ(ierr);} 710e540f424SMichael Lange for (l = 0; l < nleaves; ++l) { 711a9f1d5b2SMichael Lange ierr = DMLabelClearValue(*ovLabel, local[l], rank);CHKERRQ(ierr); 712a9f1d5b2SMichael Lange ierr = DMLabelSetValue(*ovLabel, remote[l].index, remote[l].rank);CHKERRQ(ierr); 713e540f424SMichael Lange } 714e540f424SMichael Lange /* Clean up */ 7151fd9873aSMichael Lange ierr = DMLabelDestroy(&ovAdjByRank);CHKERRQ(ierr); 716b0a623aaSMatthew G. Knepley ierr = PetscSFDestroy(&sfProc);CHKERRQ(ierr); 717b0a623aaSMatthew G. Knepley PetscFunctionReturn(0); 718b0a623aaSMatthew G. Knepley } 71970034214SMatthew G. Knepley 72024cc2ca5SMatthew G. Knepley /*@C 72124cc2ca5SMatthew G. Knepley DMPlexCreateOverlapMigrationSF - Create an SF describing the new mesh distribution to make the overlap described by the input SF 72224cc2ca5SMatthew G. Knepley 72324cc2ca5SMatthew G. Knepley Collective on DM 72424cc2ca5SMatthew G. Knepley 72524cc2ca5SMatthew G. Knepley Input Parameters: 72624cc2ca5SMatthew G. Knepley + dm - The DM 72724cc2ca5SMatthew G. Knepley - overlapSF - The SF mapping ghost points in overlap to owner points on other processes 72824cc2ca5SMatthew G. Knepley 72924cc2ca5SMatthew G. Knepley Output Parameters: 73024cc2ca5SMatthew G. Knepley + migrationSF - An SF that maps original points in old locations to points in new locations 73124cc2ca5SMatthew G. Knepley 73224cc2ca5SMatthew G. Knepley Level: developer 73324cc2ca5SMatthew G. Knepley 73424cc2ca5SMatthew G. Knepley .seealso: DMPlexCreateOverlap(), DMPlexDistribute() 73524cc2ca5SMatthew G. Knepley @*/ 73646f9b1c3SMichael Lange PetscErrorCode DMPlexCreateOverlapMigrationSF(DM dm, PetscSF overlapSF, PetscSF *migrationSF) 73746f9b1c3SMichael Lange { 73846f9b1c3SMichael Lange MPI_Comm comm; 7399852e123SBarry Smith PetscMPIInt rank, size; 74046f9b1c3SMichael Lange PetscInt d, dim, p, pStart, pEnd, nroots, nleaves, newLeaves, point, numSharedPoints; 74146f9b1c3SMichael Lange PetscInt *pointDepths, *remoteDepths, *ilocal; 74246f9b1c3SMichael Lange PetscInt *depthRecv, *depthShift, *depthIdx; 74346f9b1c3SMichael Lange PetscSFNode *iremote; 74446f9b1c3SMichael Lange PetscSF pointSF; 74546f9b1c3SMichael Lange const PetscInt *sharedLocal; 74646f9b1c3SMichael Lange const PetscSFNode *overlapRemote, *sharedRemote; 74746f9b1c3SMichael Lange PetscErrorCode ierr; 74846f9b1c3SMichael Lange 74946f9b1c3SMichael Lange PetscFunctionBegin; 75046f9b1c3SMichael Lange PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 75146f9b1c3SMichael Lange ierr = PetscObjectGetComm((PetscObject)dm, &comm);CHKERRQ(ierr); 75246f9b1c3SMichael Lange ierr = MPI_Comm_rank(comm, &rank);CHKERRQ(ierr); 7539852e123SBarry Smith ierr = MPI_Comm_size(comm, &size);CHKERRQ(ierr); 75446f9b1c3SMichael Lange ierr = DMGetDimension(dm, &dim);CHKERRQ(ierr); 75546f9b1c3SMichael Lange 75646f9b1c3SMichael Lange /* Before building the migration SF we need to know the new stratum offsets */ 75746f9b1c3SMichael Lange ierr = PetscSFGetGraph(overlapSF, &nroots, &nleaves, NULL, &overlapRemote);CHKERRQ(ierr); 75846f9b1c3SMichael Lange ierr = PetscMalloc2(nroots, &pointDepths, nleaves, &remoteDepths);CHKERRQ(ierr); 75946f9b1c3SMichael Lange for (d=0; d<dim+1; d++) { 76046f9b1c3SMichael Lange ierr = DMPlexGetDepthStratum(dm, d, &pStart, &pEnd);CHKERRQ(ierr); 76146f9b1c3SMichael Lange for (p=pStart; p<pEnd; p++) pointDepths[p] = d; 76246f9b1c3SMichael Lange } 76346f9b1c3SMichael Lange for (p=0; p<nleaves; p++) remoteDepths[p] = -1; 76446f9b1c3SMichael Lange ierr = PetscSFBcastBegin(overlapSF, MPIU_INT, pointDepths, remoteDepths);CHKERRQ(ierr); 76546f9b1c3SMichael Lange ierr = PetscSFBcastEnd(overlapSF, MPIU_INT, pointDepths, remoteDepths);CHKERRQ(ierr); 76646f9b1c3SMichael Lange 76746f9b1c3SMichael Lange /* Count recevied points in each stratum and compute the internal strata shift */ 76846f9b1c3SMichael Lange ierr = PetscMalloc3(dim+1, &depthRecv, dim+1, &depthShift, dim+1, &depthIdx);CHKERRQ(ierr); 76946f9b1c3SMichael Lange for (d=0; d<dim+1; d++) depthRecv[d]=0; 77046f9b1c3SMichael Lange for (p=0; p<nleaves; p++) depthRecv[remoteDepths[p]]++; 77146f9b1c3SMichael Lange depthShift[dim] = 0; 77246f9b1c3SMichael Lange for (d=0; d<dim; d++) depthShift[d] = depthRecv[dim]; 77346f9b1c3SMichael Lange for (d=1; d<dim; d++) depthShift[d] += depthRecv[0]; 77446f9b1c3SMichael Lange for (d=dim-2; d>0; d--) depthShift[d] += depthRecv[d+1]; 77546f9b1c3SMichael Lange for (d=0; d<dim+1; d++) { 77646f9b1c3SMichael Lange ierr = DMPlexGetDepthStratum(dm, d, &pStart, &pEnd);CHKERRQ(ierr); 77746f9b1c3SMichael Lange depthIdx[d] = pStart + depthShift[d]; 77846f9b1c3SMichael Lange } 77946f9b1c3SMichael Lange 78046f9b1c3SMichael Lange /* Form the overlap SF build an SF that describes the full overlap migration SF */ 78146f9b1c3SMichael Lange ierr = DMPlexGetChart(dm, &pStart, &pEnd);CHKERRQ(ierr); 78246f9b1c3SMichael Lange newLeaves = pEnd - pStart + nleaves; 78309b7985cSMatthew G. Knepley ierr = PetscMalloc1(newLeaves, &ilocal);CHKERRQ(ierr); 78409b7985cSMatthew G. Knepley ierr = PetscMalloc1(newLeaves, &iremote);CHKERRQ(ierr); 78546f9b1c3SMichael Lange /* First map local points to themselves */ 78646f9b1c3SMichael Lange for (d=0; d<dim+1; d++) { 78746f9b1c3SMichael Lange ierr = DMPlexGetDepthStratum(dm, d, &pStart, &pEnd);CHKERRQ(ierr); 78846f9b1c3SMichael Lange for (p=pStart; p<pEnd; p++) { 78946f9b1c3SMichael Lange point = p + depthShift[d]; 79046f9b1c3SMichael Lange ilocal[point] = point; 79146f9b1c3SMichael Lange iremote[point].index = p; 79246f9b1c3SMichael Lange iremote[point].rank = rank; 79346f9b1c3SMichael Lange depthIdx[d]++; 79446f9b1c3SMichael Lange } 79546f9b1c3SMichael Lange } 79646f9b1c3SMichael Lange 79746f9b1c3SMichael Lange /* Add in the remote roots for currently shared points */ 79846f9b1c3SMichael Lange ierr = DMGetPointSF(dm, &pointSF);CHKERRQ(ierr); 79946f9b1c3SMichael Lange ierr = PetscSFGetGraph(pointSF, NULL, &numSharedPoints, &sharedLocal, &sharedRemote);CHKERRQ(ierr); 80046f9b1c3SMichael Lange for (d=0; d<dim+1; d++) { 80146f9b1c3SMichael Lange ierr = DMPlexGetDepthStratum(dm, d, &pStart, &pEnd);CHKERRQ(ierr); 80246f9b1c3SMichael Lange for (p=0; p<numSharedPoints; p++) { 80346f9b1c3SMichael Lange if (pStart <= sharedLocal[p] && sharedLocal[p] < pEnd) { 80446f9b1c3SMichael Lange point = sharedLocal[p] + depthShift[d]; 80546f9b1c3SMichael Lange iremote[point].index = sharedRemote[p].index; 80646f9b1c3SMichael Lange iremote[point].rank = sharedRemote[p].rank; 80746f9b1c3SMichael Lange } 80846f9b1c3SMichael Lange } 80946f9b1c3SMichael Lange } 81046f9b1c3SMichael Lange 81146f9b1c3SMichael Lange /* Now add the incoming overlap points */ 81246f9b1c3SMichael Lange for (p=0; p<nleaves; p++) { 81346f9b1c3SMichael Lange point = depthIdx[remoteDepths[p]]; 81446f9b1c3SMichael Lange ilocal[point] = point; 81546f9b1c3SMichael Lange iremote[point].index = overlapRemote[p].index; 81646f9b1c3SMichael Lange iremote[point].rank = overlapRemote[p].rank; 81746f9b1c3SMichael Lange depthIdx[remoteDepths[p]]++; 81846f9b1c3SMichael Lange } 81915fff7beSMatthew G. Knepley ierr = PetscFree2(pointDepths,remoteDepths);CHKERRQ(ierr); 82046f9b1c3SMichael Lange 82146f9b1c3SMichael Lange ierr = PetscSFCreate(comm, migrationSF);CHKERRQ(ierr); 82246f9b1c3SMichael Lange ierr = PetscObjectSetName((PetscObject) *migrationSF, "Overlap Migration SF");CHKERRQ(ierr); 82346f9b1c3SMichael Lange ierr = PetscSFSetFromOptions(*migrationSF);CHKERRQ(ierr); 82446f9b1c3SMichael Lange ierr = DMPlexGetChart(dm, &pStart, &pEnd);CHKERRQ(ierr); 82546f9b1c3SMichael Lange ierr = PetscSFSetGraph(*migrationSF, pEnd-pStart, newLeaves, ilocal, PETSC_OWN_POINTER, iremote, PETSC_OWN_POINTER);CHKERRQ(ierr); 82646f9b1c3SMichael Lange 82746f9b1c3SMichael Lange ierr = PetscFree3(depthRecv, depthShift, depthIdx);CHKERRQ(ierr); 82870034214SMatthew G. Knepley PetscFunctionReturn(0); 82970034214SMatthew G. Knepley } 83070034214SMatthew G. Knepley 831a9f1d5b2SMichael Lange /*@ 832f0e73a3dSToby Isaac DMPlexStratifyMigrationSF - Rearrange the leaves of a migration sf for stratification. 833a9f1d5b2SMichael Lange 834a9f1d5b2SMichael Lange Input Parameter: 835a9f1d5b2SMichael Lange + dm - The DM 836a9f1d5b2SMichael Lange - sf - A star forest with non-ordered leaves, usually defining a DM point migration 837a9f1d5b2SMichael Lange 838a9f1d5b2SMichael Lange Output Parameter: 839a9f1d5b2SMichael Lange . migrationSF - A star forest with added leaf indirection that ensures the resulting DM is stratified 840a9f1d5b2SMichael Lange 841a9f1d5b2SMichael Lange Level: developer 842a9f1d5b2SMichael Lange 843a9f1d5b2SMichael Lange .seealso: DMPlexPartitionLabelCreateSF(), DMPlexDistribute(), DMPlexDistributeOverlap() 844a9f1d5b2SMichael Lange @*/ 845a9f1d5b2SMichael Lange PetscErrorCode DMPlexStratifyMigrationSF(DM dm, PetscSF sf, PetscSF *migrationSF) 846a9f1d5b2SMichael Lange { 847a9f1d5b2SMichael Lange MPI_Comm comm; 8489852e123SBarry Smith PetscMPIInt rank, size; 8497fab53ddSMatthew G. Knepley PetscInt d, ldepth, depth, p, pStart, pEnd, nroots, nleaves; 850a9f1d5b2SMichael Lange PetscInt *pointDepths, *remoteDepths, *ilocal; 851a9f1d5b2SMichael Lange PetscInt *depthRecv, *depthShift, *depthIdx; 852f0e73a3dSToby Isaac PetscInt hybEnd[4]; 853a9f1d5b2SMichael Lange const PetscSFNode *iremote; 854a9f1d5b2SMichael Lange PetscErrorCode ierr; 855a9f1d5b2SMichael Lange 856a9f1d5b2SMichael Lange PetscFunctionBegin; 857a9f1d5b2SMichael Lange PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 858a9f1d5b2SMichael Lange ierr = PetscObjectGetComm((PetscObject) dm, &comm);CHKERRQ(ierr); 859a9f1d5b2SMichael Lange ierr = MPI_Comm_rank(comm, &rank);CHKERRQ(ierr); 8609852e123SBarry Smith ierr = MPI_Comm_size(comm, &size);CHKERRQ(ierr); 8617fab53ddSMatthew G. Knepley ierr = DMPlexGetDepth(dm, &ldepth);CHKERRQ(ierr); 862b2566f29SBarry Smith ierr = MPIU_Allreduce(&ldepth, &depth, 1, MPIU_INT, MPI_MAX, comm);CHKERRQ(ierr); 8637fab53ddSMatthew G. Knepley if ((ldepth >= 0) && (depth != ldepth)) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Inconsistent Plex depth %d != %d", ldepth, depth); 864a9f1d5b2SMichael Lange 865a9f1d5b2SMichael Lange /* Before building the migration SF we need to know the new stratum offsets */ 866a9f1d5b2SMichael Lange ierr = PetscSFGetGraph(sf, &nroots, &nleaves, NULL, &iremote);CHKERRQ(ierr); 867a9f1d5b2SMichael Lange ierr = PetscMalloc2(nroots, &pointDepths, nleaves, &remoteDepths);CHKERRQ(ierr); 868f0e73a3dSToby Isaac ierr = DMPlexGetHybridBounds(dm,&hybEnd[depth],&hybEnd[depth-1],&hybEnd[1],&hybEnd[0]);CHKERRQ(ierr); 8697fab53ddSMatthew G. Knepley for (d = 0; d < depth+1; ++d) { 870a9f1d5b2SMichael Lange ierr = DMPlexGetDepthStratum(dm, d, &pStart, &pEnd);CHKERRQ(ierr); 871f0e73a3dSToby Isaac for (p = pStart; p < pEnd; ++p) { 872f0e73a3dSToby Isaac if (hybEnd[d] >= 0 && p >= hybEnd[d]) { /* put in a separate value for hybrid points */ 873f0e73a3dSToby Isaac pointDepths[p] = 2 * d; 874f0e73a3dSToby Isaac } else { 875f0e73a3dSToby Isaac pointDepths[p] = 2 * d + 1; 876f0e73a3dSToby Isaac } 877f0e73a3dSToby Isaac } 878a9f1d5b2SMichael Lange } 8797fab53ddSMatthew G. Knepley for (p = 0; p < nleaves; ++p) remoteDepths[p] = -1; 880a9f1d5b2SMichael Lange ierr = PetscSFBcastBegin(sf, MPIU_INT, pointDepths, remoteDepths);CHKERRQ(ierr); 881a9f1d5b2SMichael Lange ierr = PetscSFBcastEnd(sf, MPIU_INT, pointDepths, remoteDepths);CHKERRQ(ierr); 882a9f1d5b2SMichael Lange /* Count recevied points in each stratum and compute the internal strata shift */ 883f0e73a3dSToby Isaac ierr = PetscMalloc3(2*(depth+1), &depthRecv, 2*(depth+1), &depthShift, 2*(depth+1), &depthIdx);CHKERRQ(ierr); 884f0e73a3dSToby Isaac for (d = 0; d < 2*(depth+1); ++d) depthRecv[d] = 0; 8857fab53ddSMatthew G. Knepley for (p = 0; p < nleaves; ++p) depthRecv[remoteDepths[p]]++; 886f0e73a3dSToby Isaac depthShift[2*depth+1] = 0; 887f0e73a3dSToby Isaac for (d = 0; d < 2*depth+1; ++d) depthShift[d] = depthRecv[2 * depth + 1]; 888f0e73a3dSToby Isaac for (d = 0; d < 2*depth; ++d) depthShift[d] += depthRecv[2 * depth]; 889f0e73a3dSToby Isaac depthShift[0] += depthRecv[1]; 890f0e73a3dSToby Isaac for (d = 2; d < 2*depth; ++d) depthShift[d] += depthRecv[1]; 891f0e73a3dSToby Isaac for (d = 2; d < 2*depth; ++d) depthShift[d] += depthRecv[0]; 892f0e73a3dSToby Isaac for (d = 2 * depth-1; d > 2; --d) { 893f0e73a3dSToby Isaac PetscInt e; 894f0e73a3dSToby Isaac 895f0e73a3dSToby Isaac for (e = d -1; e > 1; --e) depthShift[e] += depthRecv[d]; 896f0e73a3dSToby Isaac } 897f0e73a3dSToby Isaac for (d = 0; d < 2*(depth+1); ++d) {depthIdx[d] = 0;} 898a9f1d5b2SMichael Lange /* Derive a new local permutation based on stratified indices */ 899a9f1d5b2SMichael Lange ierr = PetscMalloc1(nleaves, &ilocal);CHKERRQ(ierr); 9007fab53ddSMatthew G. Knepley for (p = 0; p < nleaves; ++p) { 9017fab53ddSMatthew G. Knepley const PetscInt dep = remoteDepths[p]; 9027fab53ddSMatthew G. Knepley 9037fab53ddSMatthew G. Knepley ilocal[p] = depthShift[dep] + depthIdx[dep]; 9047fab53ddSMatthew G. Knepley depthIdx[dep]++; 905a9f1d5b2SMichael Lange } 906a9f1d5b2SMichael Lange ierr = PetscSFCreate(comm, migrationSF);CHKERRQ(ierr); 907a9f1d5b2SMichael Lange ierr = PetscObjectSetName((PetscObject) *migrationSF, "Migration SF");CHKERRQ(ierr); 908a9f1d5b2SMichael Lange ierr = PetscSFSetGraph(*migrationSF, nroots, nleaves, ilocal, PETSC_OWN_POINTER, iremote, PETSC_COPY_VALUES);CHKERRQ(ierr); 909a9f1d5b2SMichael Lange ierr = PetscFree2(pointDepths,remoteDepths);CHKERRQ(ierr); 910a9f1d5b2SMichael Lange ierr = PetscFree3(depthRecv, depthShift, depthIdx);CHKERRQ(ierr); 911a9f1d5b2SMichael Lange PetscFunctionReturn(0); 912a9f1d5b2SMichael Lange } 913a9f1d5b2SMichael Lange 91470034214SMatthew G. Knepley /*@ 91570034214SMatthew G. Knepley DMPlexDistributeField - Distribute field data to match a given PetscSF, usually the SF from mesh distribution 91670034214SMatthew G. Knepley 91770034214SMatthew G. Knepley Collective on DM 91870034214SMatthew G. Knepley 91970034214SMatthew G. Knepley Input Parameters: 92070034214SMatthew G. Knepley + dm - The DMPlex object 92170034214SMatthew G. Knepley . pointSF - The PetscSF describing the communication pattern 92270034214SMatthew G. Knepley . originalSection - The PetscSection for existing data layout 92370034214SMatthew G. Knepley - originalVec - The existing data 92470034214SMatthew G. Knepley 92570034214SMatthew G. Knepley Output Parameters: 92670034214SMatthew G. Knepley + newSection - The PetscSF describing the new data layout 92770034214SMatthew G. Knepley - newVec - The new data 92870034214SMatthew G. Knepley 92970034214SMatthew G. Knepley Level: developer 93070034214SMatthew G. Knepley 93170034214SMatthew G. Knepley .seealso: DMPlexDistribute(), DMPlexDistributeFieldIS(), DMPlexDistributeData() 93270034214SMatthew G. Knepley @*/ 93370034214SMatthew G. Knepley PetscErrorCode DMPlexDistributeField(DM dm, PetscSF pointSF, PetscSection originalSection, Vec originalVec, PetscSection newSection, Vec newVec) 93470034214SMatthew G. Knepley { 93570034214SMatthew G. Knepley PetscSF fieldSF; 93670034214SMatthew G. Knepley PetscInt *remoteOffsets, fieldSize; 93770034214SMatthew G. Knepley PetscScalar *originalValues, *newValues; 93870034214SMatthew G. Knepley PetscErrorCode ierr; 93970034214SMatthew G. Knepley 94070034214SMatthew G. Knepley PetscFunctionBegin; 94170034214SMatthew G. Knepley ierr = PetscLogEventBegin(DMPLEX_DistributeField,dm,0,0,0);CHKERRQ(ierr); 94270034214SMatthew G. Knepley ierr = PetscSFDistributeSection(pointSF, originalSection, &remoteOffsets, newSection);CHKERRQ(ierr); 94370034214SMatthew G. Knepley 94470034214SMatthew G. Knepley ierr = PetscSectionGetStorageSize(newSection, &fieldSize);CHKERRQ(ierr); 94570034214SMatthew G. Knepley ierr = VecSetSizes(newVec, fieldSize, PETSC_DETERMINE);CHKERRQ(ierr); 94670034214SMatthew G. Knepley ierr = VecSetType(newVec,dm->vectype);CHKERRQ(ierr); 94770034214SMatthew G. Knepley 94870034214SMatthew G. Knepley ierr = VecGetArray(originalVec, &originalValues);CHKERRQ(ierr); 94970034214SMatthew G. Knepley ierr = VecGetArray(newVec, &newValues);CHKERRQ(ierr); 95070034214SMatthew G. Knepley ierr = PetscSFCreateSectionSF(pointSF, originalSection, remoteOffsets, newSection, &fieldSF);CHKERRQ(ierr); 9518a713f3bSLawrence Mitchell ierr = PetscFree(remoteOffsets);CHKERRQ(ierr); 95270034214SMatthew G. Knepley ierr = PetscSFBcastBegin(fieldSF, MPIU_SCALAR, originalValues, newValues);CHKERRQ(ierr); 95370034214SMatthew G. Knepley ierr = PetscSFBcastEnd(fieldSF, MPIU_SCALAR, originalValues, newValues);CHKERRQ(ierr); 95470034214SMatthew G. Knepley ierr = PetscSFDestroy(&fieldSF);CHKERRQ(ierr); 95570034214SMatthew G. Knepley ierr = VecRestoreArray(newVec, &newValues);CHKERRQ(ierr); 95670034214SMatthew G. Knepley ierr = VecRestoreArray(originalVec, &originalValues);CHKERRQ(ierr); 95770034214SMatthew G. Knepley ierr = PetscLogEventEnd(DMPLEX_DistributeField,dm,0,0,0);CHKERRQ(ierr); 95870034214SMatthew G. Knepley PetscFunctionReturn(0); 95970034214SMatthew G. Knepley } 96070034214SMatthew G. Knepley 96170034214SMatthew G. Knepley /*@ 96270034214SMatthew G. Knepley DMPlexDistributeFieldIS - Distribute field data to match a given PetscSF, usually the SF from mesh distribution 96370034214SMatthew G. Knepley 96470034214SMatthew G. Knepley Collective on DM 96570034214SMatthew G. Knepley 96670034214SMatthew G. Knepley Input Parameters: 96770034214SMatthew G. Knepley + dm - The DMPlex object 96870034214SMatthew G. Knepley . pointSF - The PetscSF describing the communication pattern 96970034214SMatthew G. Knepley . originalSection - The PetscSection for existing data layout 97070034214SMatthew G. Knepley - originalIS - The existing data 97170034214SMatthew G. Knepley 97270034214SMatthew G. Knepley Output Parameters: 97370034214SMatthew G. Knepley + newSection - The PetscSF describing the new data layout 97470034214SMatthew G. Knepley - newIS - The new data 97570034214SMatthew G. Knepley 97670034214SMatthew G. Knepley Level: developer 97770034214SMatthew G. Knepley 97870034214SMatthew G. Knepley .seealso: DMPlexDistribute(), DMPlexDistributeField(), DMPlexDistributeData() 97970034214SMatthew G. Knepley @*/ 98070034214SMatthew G. Knepley PetscErrorCode DMPlexDistributeFieldIS(DM dm, PetscSF pointSF, PetscSection originalSection, IS originalIS, PetscSection newSection, IS *newIS) 98170034214SMatthew G. Knepley { 98270034214SMatthew G. Knepley PetscSF fieldSF; 98370034214SMatthew G. Knepley PetscInt *newValues, *remoteOffsets, fieldSize; 98470034214SMatthew G. Knepley const PetscInt *originalValues; 98570034214SMatthew G. Knepley PetscErrorCode ierr; 98670034214SMatthew G. Knepley 98770034214SMatthew G. Knepley PetscFunctionBegin; 98870034214SMatthew G. Knepley ierr = PetscLogEventBegin(DMPLEX_DistributeField,dm,0,0,0);CHKERRQ(ierr); 98970034214SMatthew G. Knepley ierr = PetscSFDistributeSection(pointSF, originalSection, &remoteOffsets, newSection);CHKERRQ(ierr); 99070034214SMatthew G. Knepley 99170034214SMatthew G. Knepley ierr = PetscSectionGetStorageSize(newSection, &fieldSize);CHKERRQ(ierr); 992854ce69bSBarry Smith ierr = PetscMalloc1(fieldSize, &newValues);CHKERRQ(ierr); 99370034214SMatthew G. Knepley 99470034214SMatthew G. Knepley ierr = ISGetIndices(originalIS, &originalValues);CHKERRQ(ierr); 99570034214SMatthew G. Knepley ierr = PetscSFCreateSectionSF(pointSF, originalSection, remoteOffsets, newSection, &fieldSF);CHKERRQ(ierr); 9968a713f3bSLawrence Mitchell ierr = PetscFree(remoteOffsets);CHKERRQ(ierr); 997aaf8c182SMatthew G. Knepley ierr = PetscSFBcastBegin(fieldSF, MPIU_INT, (PetscInt *) originalValues, newValues);CHKERRQ(ierr); 998aaf8c182SMatthew G. Knepley ierr = PetscSFBcastEnd(fieldSF, MPIU_INT, (PetscInt *) originalValues, newValues);CHKERRQ(ierr); 99970034214SMatthew G. Knepley ierr = PetscSFDestroy(&fieldSF);CHKERRQ(ierr); 100070034214SMatthew G. Knepley ierr = ISRestoreIndices(originalIS, &originalValues);CHKERRQ(ierr); 100170034214SMatthew G. Knepley ierr = ISCreateGeneral(PetscObjectComm((PetscObject) pointSF), fieldSize, newValues, PETSC_OWN_POINTER, newIS);CHKERRQ(ierr); 100270034214SMatthew G. Knepley ierr = PetscLogEventEnd(DMPLEX_DistributeField,dm,0,0,0);CHKERRQ(ierr); 100370034214SMatthew G. Knepley PetscFunctionReturn(0); 100470034214SMatthew G. Knepley } 100570034214SMatthew G. Knepley 100670034214SMatthew G. Knepley /*@ 100770034214SMatthew G. Knepley DMPlexDistributeData - Distribute field data to match a given PetscSF, usually the SF from mesh distribution 100870034214SMatthew G. Knepley 100970034214SMatthew G. Knepley Collective on DM 101070034214SMatthew G. Knepley 101170034214SMatthew G. Knepley Input Parameters: 101270034214SMatthew G. Knepley + dm - The DMPlex object 101370034214SMatthew G. Knepley . pointSF - The PetscSF describing the communication pattern 101470034214SMatthew G. Knepley . originalSection - The PetscSection for existing data layout 101570034214SMatthew G. Knepley . datatype - The type of data 101670034214SMatthew G. Knepley - originalData - The existing data 101770034214SMatthew G. Knepley 101870034214SMatthew G. Knepley Output Parameters: 101970034214SMatthew G. Knepley + newSection - The PetscSection describing the new data layout 102070034214SMatthew G. Knepley - newData - The new data 102170034214SMatthew G. Knepley 102270034214SMatthew G. Knepley Level: developer 102370034214SMatthew G. Knepley 102470034214SMatthew G. Knepley .seealso: DMPlexDistribute(), DMPlexDistributeField() 102570034214SMatthew G. Knepley @*/ 102670034214SMatthew G. Knepley PetscErrorCode DMPlexDistributeData(DM dm, PetscSF pointSF, PetscSection originalSection, MPI_Datatype datatype, void *originalData, PetscSection newSection, void **newData) 102770034214SMatthew G. Knepley { 102870034214SMatthew G. Knepley PetscSF fieldSF; 102970034214SMatthew G. Knepley PetscInt *remoteOffsets, fieldSize; 103070034214SMatthew G. Knepley PetscMPIInt dataSize; 103170034214SMatthew G. Knepley PetscErrorCode ierr; 103270034214SMatthew G. Knepley 103370034214SMatthew G. Knepley PetscFunctionBegin; 103470034214SMatthew G. Knepley ierr = PetscLogEventBegin(DMPLEX_DistributeData,dm,0,0,0);CHKERRQ(ierr); 103570034214SMatthew G. Knepley ierr = PetscSFDistributeSection(pointSF, originalSection, &remoteOffsets, newSection);CHKERRQ(ierr); 103670034214SMatthew G. Knepley 103770034214SMatthew G. Knepley ierr = PetscSectionGetStorageSize(newSection, &fieldSize);CHKERRQ(ierr); 103870034214SMatthew G. Knepley ierr = MPI_Type_size(datatype, &dataSize);CHKERRQ(ierr); 103970034214SMatthew G. Knepley ierr = PetscMalloc(fieldSize * dataSize, newData);CHKERRQ(ierr); 104070034214SMatthew G. Knepley 104170034214SMatthew G. Knepley ierr = PetscSFCreateSectionSF(pointSF, originalSection, remoteOffsets, newSection, &fieldSF);CHKERRQ(ierr); 10428a713f3bSLawrence Mitchell ierr = PetscFree(remoteOffsets);CHKERRQ(ierr); 104370034214SMatthew G. Knepley ierr = PetscSFBcastBegin(fieldSF, datatype, originalData, *newData);CHKERRQ(ierr); 104470034214SMatthew G. Knepley ierr = PetscSFBcastEnd(fieldSF, datatype, originalData, *newData);CHKERRQ(ierr); 104570034214SMatthew G. Knepley ierr = PetscSFDestroy(&fieldSF);CHKERRQ(ierr); 104670034214SMatthew G. Knepley ierr = PetscLogEventEnd(DMPLEX_DistributeData,dm,0,0,0);CHKERRQ(ierr); 104770034214SMatthew G. Knepley PetscFunctionReturn(0); 104870034214SMatthew G. Knepley } 104970034214SMatthew G. Knepley 105024cc2ca5SMatthew G. Knepley static PetscErrorCode DMPlexDistributeCones(DM dm, PetscSF migrationSF, ISLocalToGlobalMapping original, ISLocalToGlobalMapping renumbering, DM dmParallel) 1051cc71bff1SMichael Lange { 1052cc71bff1SMichael Lange DM_Plex *pmesh = (DM_Plex*) (dmParallel)->data; 1053cc71bff1SMichael Lange MPI_Comm comm; 1054cc71bff1SMichael Lange PetscSF coneSF; 1055cc71bff1SMichael Lange PetscSection originalConeSection, newConeSection; 1056ac04eaf7SToby Isaac PetscInt *remoteOffsets, *cones, *globCones, *newCones, newConesSize; 1057cc71bff1SMichael Lange PetscBool flg; 1058cc71bff1SMichael Lange PetscErrorCode ierr; 1059cc71bff1SMichael Lange 1060cc71bff1SMichael Lange PetscFunctionBegin; 1061cc71bff1SMichael Lange PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 1062cc71bff1SMichael Lange PetscValidPointer(dmParallel,4); 1063cc71bff1SMichael Lange ierr = PetscLogEventBegin(DMPLEX_DistributeCones,dm,0,0,0);CHKERRQ(ierr); 1064cc71bff1SMichael Lange 1065cc71bff1SMichael Lange /* Distribute cone section */ 1066cc71bff1SMichael Lange ierr = PetscObjectGetComm((PetscObject)dm, &comm);CHKERRQ(ierr); 1067cc71bff1SMichael Lange ierr = DMPlexGetConeSection(dm, &originalConeSection);CHKERRQ(ierr); 1068cc71bff1SMichael Lange ierr = DMPlexGetConeSection(dmParallel, &newConeSection);CHKERRQ(ierr); 1069cc71bff1SMichael Lange ierr = PetscSFDistributeSection(migrationSF, originalConeSection, &remoteOffsets, newConeSection);CHKERRQ(ierr); 1070cc71bff1SMichael Lange ierr = DMSetUp(dmParallel);CHKERRQ(ierr); 1071cc71bff1SMichael Lange { 1072cc71bff1SMichael Lange PetscInt pStart, pEnd, p; 1073cc71bff1SMichael Lange 1074cc71bff1SMichael Lange ierr = PetscSectionGetChart(newConeSection, &pStart, &pEnd);CHKERRQ(ierr); 1075cc71bff1SMichael Lange for (p = pStart; p < pEnd; ++p) { 1076cc71bff1SMichael Lange PetscInt coneSize; 1077cc71bff1SMichael Lange ierr = PetscSectionGetDof(newConeSection, p, &coneSize);CHKERRQ(ierr); 1078cc71bff1SMichael Lange pmesh->maxConeSize = PetscMax(pmesh->maxConeSize, coneSize); 1079cc71bff1SMichael Lange } 1080cc71bff1SMichael Lange } 1081cc71bff1SMichael Lange /* Communicate and renumber cones */ 1082cc71bff1SMichael Lange ierr = PetscSFCreateSectionSF(migrationSF, originalConeSection, remoteOffsets, newConeSection, &coneSF);CHKERRQ(ierr); 10838a713f3bSLawrence Mitchell ierr = PetscFree(remoteOffsets);CHKERRQ(ierr); 1084cc71bff1SMichael Lange ierr = DMPlexGetCones(dm, &cones);CHKERRQ(ierr); 1085ac04eaf7SToby Isaac if (original) { 1086ac04eaf7SToby Isaac PetscInt numCones; 1087ac04eaf7SToby Isaac 1088ac04eaf7SToby Isaac ierr = PetscSectionGetStorageSize(originalConeSection,&numCones);CHKERRQ(ierr); ierr = PetscMalloc1(numCones,&globCones);CHKERRQ(ierr); 1089ac04eaf7SToby Isaac ierr = ISLocalToGlobalMappingApplyBlock(original, numCones, cones, globCones);CHKERRQ(ierr); 1090ac04eaf7SToby Isaac } 1091ac04eaf7SToby Isaac else { 1092ac04eaf7SToby Isaac globCones = cones; 1093ac04eaf7SToby Isaac } 1094cc71bff1SMichael Lange ierr = DMPlexGetCones(dmParallel, &newCones);CHKERRQ(ierr); 1095ac04eaf7SToby Isaac ierr = PetscSFBcastBegin(coneSF, MPIU_INT, globCones, newCones);CHKERRQ(ierr); 1096ac04eaf7SToby Isaac ierr = PetscSFBcastEnd(coneSF, MPIU_INT, globCones, newCones);CHKERRQ(ierr); 1097ac04eaf7SToby Isaac if (original) { 1098ac04eaf7SToby Isaac ierr = PetscFree(globCones);CHKERRQ(ierr); 1099ac04eaf7SToby Isaac } 1100cc71bff1SMichael Lange ierr = PetscSectionGetStorageSize(newConeSection, &newConesSize);CHKERRQ(ierr); 1101cc71bff1SMichael Lange ierr = ISGlobalToLocalMappingApplyBlock(renumbering, IS_GTOLM_MASK, newConesSize, newCones, NULL, newCones);CHKERRQ(ierr); 11023533c52bSMatthew G. Knepley #if PETSC_USE_DEBUG 11033533c52bSMatthew G. Knepley { 11043533c52bSMatthew G. Knepley PetscInt p; 11053533c52bSMatthew G. Knepley PetscBool valid = PETSC_TRUE; 11063533c52bSMatthew G. Knepley for (p = 0; p < newConesSize; ++p) { 11073533c52bSMatthew G. Knepley if (newCones[p] < 0) {valid = PETSC_FALSE; ierr = PetscPrintf(PETSC_COMM_SELF, "Point %d not in overlap SF\n", p);CHKERRQ(ierr);} 11083533c52bSMatthew G. Knepley } 11093533c52bSMatthew G. Knepley if (!valid) SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Invalid global to local map"); 11103533c52bSMatthew G. Knepley } 11113533c52bSMatthew G. Knepley #endif 1112c5929fdfSBarry Smith ierr = PetscOptionsHasName(((PetscObject) dm)->options,((PetscObject) dm)->prefix, "-cones_view", &flg);CHKERRQ(ierr); 1113cc71bff1SMichael Lange if (flg) { 1114cc71bff1SMichael Lange ierr = PetscPrintf(comm, "Serial Cone Section:\n");CHKERRQ(ierr); 1115cc71bff1SMichael Lange ierr = PetscSectionView(originalConeSection, PETSC_VIEWER_STDOUT_WORLD);CHKERRQ(ierr); 1116cc71bff1SMichael Lange ierr = PetscPrintf(comm, "Parallel Cone Section:\n");CHKERRQ(ierr); 1117cc71bff1SMichael Lange ierr = PetscSectionView(newConeSection, PETSC_VIEWER_STDOUT_WORLD);CHKERRQ(ierr); 1118cc71bff1SMichael Lange ierr = PetscSFView(coneSF, NULL);CHKERRQ(ierr); 1119cc71bff1SMichael Lange } 1120cc71bff1SMichael Lange ierr = DMPlexGetConeOrientations(dm, &cones);CHKERRQ(ierr); 1121cc71bff1SMichael Lange ierr = DMPlexGetConeOrientations(dmParallel, &newCones);CHKERRQ(ierr); 1122cc71bff1SMichael Lange ierr = PetscSFBcastBegin(coneSF, MPIU_INT, cones, newCones);CHKERRQ(ierr); 1123cc71bff1SMichael Lange ierr = PetscSFBcastEnd(coneSF, MPIU_INT, cones, newCones);CHKERRQ(ierr); 1124cc71bff1SMichael Lange ierr = PetscSFDestroy(&coneSF);CHKERRQ(ierr); 1125cc71bff1SMichael Lange ierr = PetscLogEventEnd(DMPLEX_DistributeCones,dm,0,0,0);CHKERRQ(ierr); 1126eaf898f9SPatrick Sanan /* Create supports and stratify DMPlex */ 1127cc71bff1SMichael Lange { 1128cc71bff1SMichael Lange PetscInt pStart, pEnd; 1129cc71bff1SMichael Lange 1130cc71bff1SMichael Lange ierr = PetscSectionGetChart(pmesh->coneSection, &pStart, &pEnd);CHKERRQ(ierr); 1131cc71bff1SMichael Lange ierr = PetscSectionSetChart(pmesh->supportSection, pStart, pEnd);CHKERRQ(ierr); 1132cc71bff1SMichael Lange } 1133cc71bff1SMichael Lange ierr = DMPlexSymmetrize(dmParallel);CHKERRQ(ierr); 1134cc71bff1SMichael Lange ierr = DMPlexStratify(dmParallel);CHKERRQ(ierr); 11351cf84007SMatthew G. Knepley { 11361cf84007SMatthew G. Knepley PetscBool useCone, useClosure, useAnchors; 11371cf84007SMatthew G. Knepley 11381cf84007SMatthew G. Knepley ierr = DMPlexGetAdjacencyUseCone(dm, &useCone);CHKERRQ(ierr); 11391cf84007SMatthew G. Knepley ierr = DMPlexGetAdjacencyUseClosure(dm, &useClosure);CHKERRQ(ierr); 11401cf84007SMatthew G. Knepley ierr = DMPlexGetAdjacencyUseAnchors(dm, &useAnchors);CHKERRQ(ierr); 11411cf84007SMatthew G. Knepley ierr = DMPlexSetAdjacencyUseCone(dmParallel, useCone);CHKERRQ(ierr); 11421cf84007SMatthew G. Knepley ierr = DMPlexSetAdjacencyUseClosure(dmParallel, useClosure);CHKERRQ(ierr); 11431cf84007SMatthew G. Knepley ierr = DMPlexSetAdjacencyUseAnchors(dmParallel, useAnchors);CHKERRQ(ierr); 11441cf84007SMatthew G. Knepley } 1145cc71bff1SMichael Lange PetscFunctionReturn(0); 1146cc71bff1SMichael Lange } 1147cc71bff1SMichael Lange 114824cc2ca5SMatthew G. Knepley static PetscErrorCode DMPlexDistributeCoordinates(DM dm, PetscSF migrationSF, DM dmParallel) 11490df0e737SMichael Lange { 11500df0e737SMichael Lange MPI_Comm comm; 11510df0e737SMichael Lange PetscSection originalCoordSection, newCoordSection; 11520df0e737SMichael Lange Vec originalCoordinates, newCoordinates; 11530df0e737SMichael Lange PetscInt bs; 115490b157c4SStefano Zampini PetscBool isper; 11550df0e737SMichael Lange const char *name; 11560df0e737SMichael Lange const PetscReal *maxCell, *L; 11575dc8c3f7SMatthew G. Knepley const DMBoundaryType *bd; 11580df0e737SMichael Lange PetscErrorCode ierr; 11590df0e737SMichael Lange 11600df0e737SMichael Lange PetscFunctionBegin; 11610df0e737SMichael Lange PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 11620df0e737SMichael Lange PetscValidPointer(dmParallel, 3); 11630df0e737SMichael Lange 11640df0e737SMichael Lange ierr = PetscObjectGetComm((PetscObject)dm, &comm);CHKERRQ(ierr); 11650df0e737SMichael Lange ierr = DMGetCoordinateSection(dm, &originalCoordSection);CHKERRQ(ierr); 11660df0e737SMichael Lange ierr = DMGetCoordinateSection(dmParallel, &newCoordSection);CHKERRQ(ierr); 11670df0e737SMichael Lange ierr = DMGetCoordinatesLocal(dm, &originalCoordinates);CHKERRQ(ierr); 11680df0e737SMichael Lange if (originalCoordinates) { 11698b9ced59SLisandro Dalcin ierr = VecCreate(PETSC_COMM_SELF, &newCoordinates);CHKERRQ(ierr); 11700df0e737SMichael Lange ierr = PetscObjectGetName((PetscObject) originalCoordinates, &name);CHKERRQ(ierr); 11710df0e737SMichael Lange ierr = PetscObjectSetName((PetscObject) newCoordinates, name);CHKERRQ(ierr); 11720df0e737SMichael Lange 11730df0e737SMichael Lange ierr = DMPlexDistributeField(dm, migrationSF, originalCoordSection, originalCoordinates, newCoordSection, newCoordinates);CHKERRQ(ierr); 11740df0e737SMichael Lange ierr = DMSetCoordinatesLocal(dmParallel, newCoordinates);CHKERRQ(ierr); 11750df0e737SMichael Lange ierr = VecGetBlockSize(originalCoordinates, &bs);CHKERRQ(ierr); 11760df0e737SMichael Lange ierr = VecSetBlockSize(newCoordinates, bs);CHKERRQ(ierr); 11770df0e737SMichael Lange ierr = VecDestroy(&newCoordinates);CHKERRQ(ierr); 11780df0e737SMichael Lange } 117990b157c4SStefano Zampini ierr = DMGetPeriodicity(dm, &isper, &maxCell, &L, &bd);CHKERRQ(ierr); 118090b157c4SStefano Zampini ierr = DMSetPeriodicity(dmParallel, isper, maxCell, L, bd);CHKERRQ(ierr); 11810df0e737SMichael Lange PetscFunctionReturn(0); 11820df0e737SMichael Lange } 11830df0e737SMichael Lange 1184d995df53SMatthew G. Knepley /* Here we are assuming that process 0 always has everything */ 118524cc2ca5SMatthew G. Knepley static PetscErrorCode DMPlexDistributeLabels(DM dm, PetscSF migrationSF, DM dmParallel) 11860df0e737SMichael Lange { 1187df0420ecSMatthew G. Knepley DM_Plex *mesh = (DM_Plex*) dm->data; 11880df0e737SMichael Lange MPI_Comm comm; 11897980c9d4SMatthew G. Knepley DMLabel depthLabel; 11900df0e737SMichael Lange PetscMPIInt rank; 11917980c9d4SMatthew G. Knepley PetscInt depth, d, numLabels, numLocalLabels, l; 1192df0420ecSMatthew G. Knepley PetscBool hasLabels = PETSC_FALSE, lsendDepth, sendDepth; 1193df0420ecSMatthew G. Knepley PetscObjectState depthState = -1; 11940df0e737SMichael Lange PetscErrorCode ierr; 11950df0e737SMichael Lange 11960df0e737SMichael Lange PetscFunctionBegin; 11970df0e737SMichael Lange PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 11982eb1fa14SMichael Lange PetscValidHeaderSpecific(dm, DM_CLASSID, 3); 11990df0e737SMichael Lange ierr = PetscLogEventBegin(DMPLEX_DistributeLabels,dm,0,0,0);CHKERRQ(ierr); 12000df0e737SMichael Lange ierr = PetscObjectGetComm((PetscObject)dm, &comm);CHKERRQ(ierr); 12010df0e737SMichael Lange ierr = MPI_Comm_rank(comm, &rank);CHKERRQ(ierr); 12020df0e737SMichael Lange 1203df0420ecSMatthew G. Knepley /* If the user has changed the depth label, communicate it instead */ 12047980c9d4SMatthew G. Knepley ierr = DMPlexGetDepth(dm, &depth);CHKERRQ(ierr); 12057980c9d4SMatthew G. Knepley ierr = DMPlexGetDepthLabel(dm, &depthLabel);CHKERRQ(ierr); 12067980c9d4SMatthew G. Knepley if (depthLabel) {ierr = DMLabelGetState(depthLabel, &depthState);CHKERRQ(ierr);} 1207df0420ecSMatthew G. Knepley lsendDepth = mesh->depthState != depthState ? PETSC_TRUE : PETSC_FALSE; 1208b2566f29SBarry Smith ierr = MPIU_Allreduce(&lsendDepth, &sendDepth, 1, MPIU_BOOL, MPI_LOR, comm);CHKERRQ(ierr); 1209df0420ecSMatthew G. Knepley if (sendDepth) { 12107980c9d4SMatthew G. Knepley ierr = DMRemoveLabel(dmParallel, "depth", &depthLabel);CHKERRQ(ierr); 12117980c9d4SMatthew G. Knepley ierr = DMLabelDestroy(&depthLabel);CHKERRQ(ierr); 1212df0420ecSMatthew G. Knepley } 1213d995df53SMatthew G. Knepley /* Everyone must have either the same number of labels, or none */ 1214c58f1c22SToby Isaac ierr = DMGetNumLabels(dm, &numLocalLabels);CHKERRQ(ierr); 1215d995df53SMatthew G. Knepley numLabels = numLocalLabels; 12160df0e737SMichael Lange ierr = MPI_Bcast(&numLabels, 1, MPIU_INT, 0, comm);CHKERRQ(ierr); 1217627847f0SMatthew G. Knepley if (numLabels == numLocalLabels) hasLabels = PETSC_TRUE; 1218bdd2d751SMichael Lange for (l = numLabels-1; l >= 0; --l) { 1219bdd2d751SMichael Lange DMLabel label = NULL, labelNew = NULL; 122083e10cb3SLisandro Dalcin PetscBool isDepth, lisOutput = PETSC_TRUE, isOutput; 12210df0e737SMichael Lange 122283e10cb3SLisandro Dalcin if (hasLabels) {ierr = DMGetLabelByNum(dm, l, &label);CHKERRQ(ierr);} 12230df0e737SMichael Lange /* Skip "depth" because it is recreated */ 122483e10cb3SLisandro Dalcin if (hasLabels) {ierr = PetscStrcmp(label->name, "depth", &isDepth);CHKERRQ(ierr);} 122583e10cb3SLisandro Dalcin ierr = MPI_Bcast(&isDepth, 1, MPIU_BOOL, 0, comm);CHKERRQ(ierr); 122683e10cb3SLisandro Dalcin if (isDepth && !sendDepth) continue; 1227bdd2d751SMichael Lange ierr = DMLabelDistribute(label, migrationSF, &labelNew);CHKERRQ(ierr); 122883e10cb3SLisandro Dalcin if (isDepth) { 12297980c9d4SMatthew G. Knepley /* Put in any missing strata which can occur if users are managing the depth label themselves */ 12307980c9d4SMatthew G. Knepley PetscInt gdepth; 12317980c9d4SMatthew G. Knepley 12327980c9d4SMatthew G. Knepley ierr = MPIU_Allreduce(&depth, &gdepth, 1, MPIU_INT, MPI_MAX, comm);CHKERRQ(ierr); 12337980c9d4SMatthew G. Knepley if ((depth >= 0) && (gdepth != depth)) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Inconsistent Plex depth %d != %d", depth, gdepth); 12347980c9d4SMatthew G. Knepley for (d = 0; d <= gdepth; ++d) { 12357980c9d4SMatthew G. Knepley PetscBool has; 12367980c9d4SMatthew G. Knepley 12377980c9d4SMatthew G. Knepley ierr = DMLabelHasStratum(labelNew, d, &has);CHKERRQ(ierr); 123883e10cb3SLisandro Dalcin if (!has) {ierr = DMLabelAddStratum(labelNew, d);CHKERRQ(ierr);} 12397980c9d4SMatthew G. Knepley } 12407980c9d4SMatthew G. Knepley } 1241c58f1c22SToby Isaac ierr = DMAddLabel(dmParallel, labelNew);CHKERRQ(ierr); 124283e10cb3SLisandro Dalcin /* Put the output flag in the new label */ 124383e10cb3SLisandro Dalcin if (hasLabels) {ierr = DMGetLabelOutput(dm, label->name, &lisOutput);CHKERRQ(ierr);} 124483e10cb3SLisandro Dalcin ierr = MPIU_Allreduce(&lisOutput, &isOutput, 1, MPIU_BOOL, MPI_LAND, comm);CHKERRQ(ierr); 124583e10cb3SLisandro Dalcin ierr = DMSetLabelOutput(dmParallel, labelNew->name, isOutput);CHKERRQ(ierr); 12460df0e737SMichael Lange } 12470df0e737SMichael Lange ierr = PetscLogEventEnd(DMPLEX_DistributeLabels,dm,0,0,0);CHKERRQ(ierr); 12480df0e737SMichael Lange PetscFunctionReturn(0); 12490df0e737SMichael Lange } 12500df0e737SMichael Lange 125124cc2ca5SMatthew G. Knepley static PetscErrorCode DMPlexDistributeSetupHybrid(DM dm, PetscSF migrationSF, ISLocalToGlobalMapping renumbering, DM dmParallel) 12529734c634SMichael Lange { 12539734c634SMichael Lange DM_Plex *mesh = (DM_Plex*) dm->data; 12549734c634SMichael Lange DM_Plex *pmesh = (DM_Plex*) (dmParallel)->data; 1255f0e73a3dSToby Isaac PetscBool *isHybrid, *isHybridParallel; 1256f0e73a3dSToby Isaac PetscInt dim, depth, d; 1257f0e73a3dSToby Isaac PetscInt pStart, pEnd, pStartP, pEndP; 12589734c634SMichael Lange PetscErrorCode ierr; 12599734c634SMichael Lange 12609734c634SMichael Lange PetscFunctionBegin; 12619734c634SMichael Lange PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 12629734c634SMichael Lange PetscValidPointer(dmParallel, 4); 12639734c634SMichael Lange 12649734c634SMichael Lange ierr = DMGetDimension(dm, &dim);CHKERRQ(ierr); 12659734c634SMichael Lange ierr = DMPlexGetDepth(dm, &depth);CHKERRQ(ierr); 1266f0e73a3dSToby Isaac ierr = DMPlexGetChart(dm,&pStart,&pEnd);CHKERRQ(ierr); 1267f0e73a3dSToby Isaac ierr = DMPlexGetChart(dmParallel,&pStartP,&pEndP);CHKERRQ(ierr); 1268f0e73a3dSToby Isaac ierr = PetscCalloc2(pEnd-pStart,&isHybrid,pEndP-pStartP,&isHybridParallel);CHKERRQ(ierr); 1269f0e73a3dSToby Isaac for (d = 0; d <= depth; d++) { 1270f0e73a3dSToby Isaac PetscInt hybridMax = (depth == 1 && d == 1) ? mesh->hybridPointMax[dim] : mesh->hybridPointMax[d]; 12719734c634SMichael Lange 1272f0e73a3dSToby Isaac if (hybridMax >= 0) { 1273f0e73a3dSToby Isaac PetscInt sStart, sEnd, p; 12749734c634SMichael Lange 1275f0e73a3dSToby Isaac ierr = DMPlexGetDepthStratum(dm,d,&sStart,&sEnd);CHKERRQ(ierr); 1276f0e73a3dSToby Isaac for (p = hybridMax; p < sEnd; p++) isHybrid[p-pStart] = PETSC_TRUE; 12779734c634SMichael Lange } 12789734c634SMichael Lange } 1279f0e73a3dSToby Isaac ierr = PetscSFBcastBegin(migrationSF,MPIU_BOOL,isHybrid,isHybridParallel);CHKERRQ(ierr); 1280f0e73a3dSToby Isaac ierr = PetscSFBcastEnd(migrationSF,MPIU_BOOL,isHybrid,isHybridParallel);CHKERRQ(ierr); 1281f0e73a3dSToby Isaac for (d = 0; d <= dim; d++) pmesh->hybridPointMax[d] = -1; 1282f0e73a3dSToby Isaac for (d = 0; d <= depth; d++) { 1283f0e73a3dSToby Isaac PetscInt sStart, sEnd, p, dd; 1284f0e73a3dSToby Isaac 1285f0e73a3dSToby Isaac ierr = DMPlexGetDepthStratum(dmParallel,d,&sStart,&sEnd);CHKERRQ(ierr); 1286f0e73a3dSToby Isaac dd = (depth == 1 && d == 1) ? dim : d; 1287f0e73a3dSToby Isaac for (p = sStart; p < sEnd; p++) { 1288f0e73a3dSToby Isaac if (isHybridParallel[p-pStartP]) { 1289f0e73a3dSToby Isaac pmesh->hybridPointMax[dd] = p; 1290f0e73a3dSToby Isaac break; 1291f0e73a3dSToby Isaac } 1292f0e73a3dSToby Isaac } 1293f0e73a3dSToby Isaac } 1294f0e73a3dSToby Isaac ierr = PetscFree2(isHybrid,isHybridParallel);CHKERRQ(ierr); 12959734c634SMichael Lange PetscFunctionReturn(0); 12969734c634SMichael Lange } 12970df0e737SMichael Lange 129824cc2ca5SMatthew G. Knepley static PetscErrorCode DMPlexDistributeSetupTree(DM dm, PetscSF migrationSF, ISLocalToGlobalMapping original, ISLocalToGlobalMapping renumbering, DM dmParallel) 1299a6f36705SMichael Lange { 130015078cd4SMichael Lange DM_Plex *mesh = (DM_Plex*) dm->data; 130115078cd4SMichael Lange DM_Plex *pmesh = (DM_Plex*) (dmParallel)->data; 1302a6f36705SMichael Lange MPI_Comm comm; 1303a6f36705SMichael Lange DM refTree; 1304a6f36705SMichael Lange PetscSection origParentSection, newParentSection; 1305a6f36705SMichael Lange PetscInt *origParents, *origChildIDs; 1306a6f36705SMichael Lange PetscBool flg; 1307a6f36705SMichael Lange PetscErrorCode ierr; 1308a6f36705SMichael Lange 1309a6f36705SMichael Lange PetscFunctionBegin; 1310a6f36705SMichael Lange PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 1311a6f36705SMichael Lange PetscValidHeaderSpecific(dm, DM_CLASSID, 4); 1312a6f36705SMichael Lange ierr = PetscObjectGetComm((PetscObject)dm, &comm);CHKERRQ(ierr); 1313a6f36705SMichael Lange 1314a6f36705SMichael Lange /* Set up tree */ 1315a6f36705SMichael Lange ierr = DMPlexGetReferenceTree(dm,&refTree);CHKERRQ(ierr); 1316a6f36705SMichael Lange ierr = DMPlexSetReferenceTree(dmParallel,refTree);CHKERRQ(ierr); 1317a6f36705SMichael Lange ierr = DMPlexGetTree(dm,&origParentSection,&origParents,&origChildIDs,NULL,NULL);CHKERRQ(ierr); 1318a6f36705SMichael Lange if (origParentSection) { 1319a6f36705SMichael Lange PetscInt pStart, pEnd; 132008633170SToby Isaac PetscInt *newParents, *newChildIDs, *globParents; 1321a6f36705SMichael Lange PetscInt *remoteOffsetsParents, newParentSize; 1322a6f36705SMichael Lange PetscSF parentSF; 1323a6f36705SMichael Lange 1324a6f36705SMichael Lange ierr = DMPlexGetChart(dmParallel, &pStart, &pEnd);CHKERRQ(ierr); 1325a6f36705SMichael Lange ierr = PetscSectionCreate(PetscObjectComm((PetscObject)dmParallel),&newParentSection);CHKERRQ(ierr); 1326a6f36705SMichael Lange ierr = PetscSectionSetChart(newParentSection,pStart,pEnd);CHKERRQ(ierr); 1327a6f36705SMichael Lange ierr = PetscSFDistributeSection(migrationSF, origParentSection, &remoteOffsetsParents, newParentSection);CHKERRQ(ierr); 1328a6f36705SMichael Lange ierr = PetscSFCreateSectionSF(migrationSF, origParentSection, remoteOffsetsParents, newParentSection, &parentSF);CHKERRQ(ierr); 13298a713f3bSLawrence Mitchell ierr = PetscFree(remoteOffsetsParents);CHKERRQ(ierr); 1330a6f36705SMichael Lange ierr = PetscSectionGetStorageSize(newParentSection,&newParentSize);CHKERRQ(ierr); 1331a6f36705SMichael Lange ierr = PetscMalloc2(newParentSize,&newParents,newParentSize,&newChildIDs);CHKERRQ(ierr); 133208633170SToby Isaac if (original) { 133308633170SToby Isaac PetscInt numParents; 133408633170SToby Isaac 133508633170SToby Isaac ierr = PetscSectionGetStorageSize(origParentSection,&numParents);CHKERRQ(ierr); 133608633170SToby Isaac ierr = PetscMalloc1(numParents,&globParents);CHKERRQ(ierr); 133708633170SToby Isaac ierr = ISLocalToGlobalMappingApplyBlock(original, numParents, origParents, globParents);CHKERRQ(ierr); 133808633170SToby Isaac } 133908633170SToby Isaac else { 134008633170SToby Isaac globParents = origParents; 134108633170SToby Isaac } 134208633170SToby Isaac ierr = PetscSFBcastBegin(parentSF, MPIU_INT, globParents, newParents);CHKERRQ(ierr); 134308633170SToby Isaac ierr = PetscSFBcastEnd(parentSF, MPIU_INT, globParents, newParents);CHKERRQ(ierr); 134408633170SToby Isaac if (original) { 134508633170SToby Isaac ierr = PetscFree(globParents);CHKERRQ(ierr); 134608633170SToby Isaac } 1347a6f36705SMichael Lange ierr = PetscSFBcastBegin(parentSF, MPIU_INT, origChildIDs, newChildIDs);CHKERRQ(ierr); 1348a6f36705SMichael Lange ierr = PetscSFBcastEnd(parentSF, MPIU_INT, origChildIDs, newChildIDs);CHKERRQ(ierr); 1349a6f36705SMichael Lange ierr = ISGlobalToLocalMappingApplyBlock(renumbering,IS_GTOLM_MASK, newParentSize, newParents, NULL, newParents);CHKERRQ(ierr); 13504a54e071SToby Isaac #if PETSC_USE_DEBUG 13514a54e071SToby Isaac { 13524a54e071SToby Isaac PetscInt p; 13534a54e071SToby Isaac PetscBool valid = PETSC_TRUE; 13544a54e071SToby Isaac for (p = 0; p < newParentSize; ++p) { 13554a54e071SToby Isaac if (newParents[p] < 0) {valid = PETSC_FALSE; ierr = PetscPrintf(PETSC_COMM_SELF, "Point %d not in overlap SF\n", p);CHKERRQ(ierr);} 13564a54e071SToby Isaac } 13574a54e071SToby Isaac if (!valid) SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Invalid global to local map"); 13584a54e071SToby Isaac } 13594a54e071SToby Isaac #endif 1360c5929fdfSBarry Smith ierr = PetscOptionsHasName(((PetscObject) dm)->options,((PetscObject) dm)->prefix, "-parents_view", &flg);CHKERRQ(ierr); 1361a6f36705SMichael Lange if (flg) { 1362a6f36705SMichael Lange ierr = PetscPrintf(comm, "Serial Parent Section: \n");CHKERRQ(ierr); 1363a6f36705SMichael Lange ierr = PetscSectionView(origParentSection, PETSC_VIEWER_STDOUT_WORLD);CHKERRQ(ierr); 1364a6f36705SMichael Lange ierr = PetscPrintf(comm, "Parallel Parent Section: \n");CHKERRQ(ierr); 1365a6f36705SMichael Lange ierr = PetscSectionView(newParentSection, PETSC_VIEWER_STDOUT_WORLD);CHKERRQ(ierr); 1366a6f36705SMichael Lange ierr = PetscSFView(parentSF, NULL);CHKERRQ(ierr); 1367a6f36705SMichael Lange } 1368a6f36705SMichael Lange ierr = DMPlexSetTree(dmParallel,newParentSection,newParents,newChildIDs);CHKERRQ(ierr); 1369a6f36705SMichael Lange ierr = PetscSectionDestroy(&newParentSection);CHKERRQ(ierr); 1370a6f36705SMichael Lange ierr = PetscFree2(newParents,newChildIDs);CHKERRQ(ierr); 1371a6f36705SMichael Lange ierr = PetscSFDestroy(&parentSF);CHKERRQ(ierr); 1372a6f36705SMichael Lange } 137315078cd4SMichael Lange pmesh->useAnchors = mesh->useAnchors; 1374a6f36705SMichael Lange PetscFunctionReturn(0); 1375a6f36705SMichael Lange } 13760df0e737SMichael Lange 137724cc2ca5SMatthew G. Knepley PETSC_UNUSED static PetscErrorCode DMPlexDistributeSF(DM dm, PetscSF migrationSF, DM dmParallel) 13784eca1733SMichael Lange { 13799852e123SBarry Smith PetscMPIInt rank, size; 13804eca1733SMichael Lange MPI_Comm comm; 13814eca1733SMichael Lange PetscErrorCode ierr; 13824eca1733SMichael Lange 13834eca1733SMichael Lange PetscFunctionBegin; 13844eca1733SMichael Lange PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 13854eca1733SMichael Lange PetscValidPointer(dmParallel,7); 13864eca1733SMichael Lange 13874eca1733SMichael Lange /* Create point SF for parallel mesh */ 13884eca1733SMichael Lange ierr = PetscLogEventBegin(DMPLEX_DistributeSF,dm,0,0,0);CHKERRQ(ierr); 13894eca1733SMichael Lange ierr = PetscObjectGetComm((PetscObject)dm, &comm);CHKERRQ(ierr); 13904eca1733SMichael Lange ierr = MPI_Comm_rank(comm, &rank);CHKERRQ(ierr); 13919852e123SBarry Smith ierr = MPI_Comm_size(comm, &size);CHKERRQ(ierr); 13924eca1733SMichael Lange { 13934eca1733SMichael Lange const PetscInt *leaves; 13944eca1733SMichael Lange PetscSFNode *remotePoints, *rowners, *lowners; 13954eca1733SMichael Lange PetscInt numRoots, numLeaves, numGhostPoints = 0, p, gp, *ghostPoints; 13964eca1733SMichael Lange PetscInt pStart, pEnd; 13974eca1733SMichael Lange 13984eca1733SMichael Lange ierr = DMPlexGetChart(dmParallel, &pStart, &pEnd);CHKERRQ(ierr); 13994eca1733SMichael Lange ierr = PetscSFGetGraph(migrationSF, &numRoots, &numLeaves, &leaves, NULL);CHKERRQ(ierr); 14004eca1733SMichael Lange ierr = PetscMalloc2(numRoots,&rowners,numLeaves,&lowners);CHKERRQ(ierr); 14014eca1733SMichael Lange for (p=0; p<numRoots; p++) { 14024eca1733SMichael Lange rowners[p].rank = -1; 14034eca1733SMichael Lange rowners[p].index = -1; 14044eca1733SMichael Lange } 14054eca1733SMichael Lange ierr = PetscSFBcastBegin(migrationSF, MPIU_2INT, rowners, lowners);CHKERRQ(ierr); 14064eca1733SMichael Lange ierr = PetscSFBcastEnd(migrationSF, MPIU_2INT, rowners, lowners);CHKERRQ(ierr); 14074eca1733SMichael Lange for (p = 0; p < numLeaves; ++p) { 14084eca1733SMichael Lange if (lowners[p].rank < 0 || lowners[p].rank == rank) { /* Either put in a bid or we know we own it */ 14094eca1733SMichael Lange lowners[p].rank = rank; 14104eca1733SMichael Lange lowners[p].index = leaves ? leaves[p] : p; 14114eca1733SMichael Lange } else if (lowners[p].rank >= 0) { /* Point already claimed so flag so that MAXLOC does not listen to us */ 14124eca1733SMichael Lange lowners[p].rank = -2; 14134eca1733SMichael Lange lowners[p].index = -2; 14144eca1733SMichael Lange } 14154eca1733SMichael Lange } 14164eca1733SMichael Lange for (p=0; p<numRoots; p++) { /* Root must not participate in the rediction, flag so that MAXLOC does not use */ 14174eca1733SMichael Lange rowners[p].rank = -3; 14184eca1733SMichael Lange rowners[p].index = -3; 14194eca1733SMichael Lange } 14204eca1733SMichael Lange ierr = PetscSFReduceBegin(migrationSF, MPIU_2INT, lowners, rowners, MPI_MAXLOC);CHKERRQ(ierr); 14214eca1733SMichael Lange ierr = PetscSFReduceEnd(migrationSF, MPIU_2INT, lowners, rowners, MPI_MAXLOC);CHKERRQ(ierr); 14224eca1733SMichael Lange ierr = PetscSFBcastBegin(migrationSF, MPIU_2INT, rowners, lowners);CHKERRQ(ierr); 14234eca1733SMichael Lange ierr = PetscSFBcastEnd(migrationSF, MPIU_2INT, rowners, lowners);CHKERRQ(ierr); 14244eca1733SMichael Lange for (p = 0; p < numLeaves; ++p) { 14254eca1733SMichael Lange if (lowners[p].rank < 0 || lowners[p].index < 0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Cell partition corrupt: point not claimed"); 14264eca1733SMichael Lange if (lowners[p].rank != rank) ++numGhostPoints; 14274eca1733SMichael Lange } 14284eca1733SMichael Lange ierr = PetscMalloc1(numGhostPoints, &ghostPoints);CHKERRQ(ierr); 14294eca1733SMichael Lange ierr = PetscMalloc1(numGhostPoints, &remotePoints);CHKERRQ(ierr); 14304eca1733SMichael Lange for (p = 0, gp = 0; p < numLeaves; ++p) { 14314eca1733SMichael Lange if (lowners[p].rank != rank) { 14324eca1733SMichael Lange ghostPoints[gp] = leaves ? leaves[p] : p; 14334eca1733SMichael Lange remotePoints[gp].rank = lowners[p].rank; 14344eca1733SMichael Lange remotePoints[gp].index = lowners[p].index; 14354eca1733SMichael Lange ++gp; 14364eca1733SMichael Lange } 14374eca1733SMichael Lange } 14384eca1733SMichael Lange ierr = PetscFree2(rowners,lowners);CHKERRQ(ierr); 14394eca1733SMichael Lange ierr = PetscSFSetGraph((dmParallel)->sf, pEnd - pStart, numGhostPoints, ghostPoints, PETSC_OWN_POINTER, remotePoints, PETSC_OWN_POINTER);CHKERRQ(ierr); 14404eca1733SMichael Lange ierr = PetscSFSetFromOptions((dmParallel)->sf);CHKERRQ(ierr); 14414eca1733SMichael Lange } 14421cf84007SMatthew G. Knepley { 14431cf84007SMatthew G. Knepley PetscBool useCone, useClosure, useAnchors; 14441cf84007SMatthew G. Knepley 14451cf84007SMatthew G. Knepley ierr = DMPlexGetAdjacencyUseCone(dm, &useCone);CHKERRQ(ierr); 14461cf84007SMatthew G. Knepley ierr = DMPlexGetAdjacencyUseClosure(dm, &useClosure);CHKERRQ(ierr); 14471cf84007SMatthew G. Knepley ierr = DMPlexGetAdjacencyUseAnchors(dm, &useAnchors);CHKERRQ(ierr); 14481cf84007SMatthew G. Knepley ierr = DMPlexSetAdjacencyUseCone(dmParallel, useCone);CHKERRQ(ierr); 14491cf84007SMatthew G. Knepley ierr = DMPlexSetAdjacencyUseClosure(dmParallel, useClosure);CHKERRQ(ierr); 14501cf84007SMatthew G. Knepley ierr = DMPlexSetAdjacencyUseAnchors(dmParallel, useAnchors);CHKERRQ(ierr); 14511cf84007SMatthew G. Knepley } 14524eca1733SMichael Lange ierr = PetscLogEventEnd(DMPLEX_DistributeSF,dm,0,0,0);CHKERRQ(ierr); 14534eca1733SMichael Lange PetscFunctionReturn(0); 14544eca1733SMichael Lange } 14554eca1733SMichael Lange 1456f5bf2dbfSMichael Lange /*@C 1457f5bf2dbfSMichael Lange DMPlexDerivePointSF - Build a point SF from an SF describing a point migration 1458f5bf2dbfSMichael Lange 1459f5bf2dbfSMichael Lange Input Parameter: 1460f5bf2dbfSMichael Lange + dm - The source DMPlex object 1461f5bf2dbfSMichael Lange . migrationSF - The star forest that describes the parallel point remapping 14621627f6ccSMichael Lange . ownership - Flag causing a vote to determine point ownership 1463f5bf2dbfSMichael Lange 1464f5bf2dbfSMichael Lange Output Parameter: 1465f5bf2dbfSMichael Lange - pointSF - The star forest describing the point overlap in the remapped DM 1466f5bf2dbfSMichael Lange 1467f5bf2dbfSMichael Lange Level: developer 1468f5bf2dbfSMichael Lange 1469f5bf2dbfSMichael Lange .seealso: DMPlexDistribute(), DMPlexDistributeOverlap() 1470f5bf2dbfSMichael Lange @*/ 1471f5bf2dbfSMichael Lange PetscErrorCode DMPlexCreatePointSF(DM dm, PetscSF migrationSF, PetscBool ownership, PetscSF *pointSF) 1472f5bf2dbfSMichael Lange { 147323193802SMatthew G. Knepley DM_Plex *mesh = (DM_Plex *) dm->data; 147423193802SMatthew G. Knepley PetscMPIInt rank, size; 14751627f6ccSMichael Lange PetscInt p, nroots, nleaves, idx, npointLeaves; 1476f5bf2dbfSMichael Lange PetscInt *pointLocal; 1477f5bf2dbfSMichael Lange const PetscInt *leaves; 1478f5bf2dbfSMichael Lange const PetscSFNode *roots; 1479f5bf2dbfSMichael Lange PetscSFNode *rootNodes, *leafNodes, *pointRemote; 148023193802SMatthew G. Knepley Vec shifts; 148123193802SMatthew G. Knepley const PetscInt numShifts = 37; /* TODO Use larger prime */ 148223193802SMatthew G. Knepley const PetscScalar *shift = NULL; 148323193802SMatthew G. Knepley const PetscBool shiftDebug = PETSC_FALSE; 1484f5bf2dbfSMichael Lange PetscErrorCode ierr; 1485f5bf2dbfSMichael Lange 1486f5bf2dbfSMichael Lange PetscFunctionBegin; 1487f5bf2dbfSMichael Lange PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 1488f5bf2dbfSMichael Lange ierr = MPI_Comm_rank(PetscObjectComm((PetscObject) dm), &rank);CHKERRQ(ierr); 1489*ab0bc224SMatthew G. Knepley ierr = MPI_Comm_size(PetscObjectComm((PetscObject) dm), &size);CHKERRQ(ierr); 1490f5bf2dbfSMichael Lange 1491f5bf2dbfSMichael Lange ierr = PetscSFGetGraph(migrationSF, &nroots, &nleaves, &leaves, &roots);CHKERRQ(ierr); 1492f5bf2dbfSMichael Lange ierr = PetscMalloc2(nroots, &rootNodes, nleaves, &leafNodes);CHKERRQ(ierr); 1493f5bf2dbfSMichael Lange if (ownership) { 149423193802SMatthew G. Knepley /* If balancing, we compute a random cyclic shift of the rank for each remote point. That way, the max will evenly distribute among ranks. */ 149523193802SMatthew G. Knepley if (mesh->partitionBalance) { 149623193802SMatthew G. Knepley PetscRandom r; 149723193802SMatthew G. Knepley 149823193802SMatthew G. Knepley ierr = PetscRandomCreate(PETSC_COMM_SELF, &r);CHKERRQ(ierr); 149923193802SMatthew G. Knepley ierr = PetscRandomSetInterval(r, 0, 17*size);CHKERRQ(ierr); 150023193802SMatthew G. Knepley ierr = VecCreate(PETSC_COMM_SELF, &shifts);CHKERRQ(ierr); 150123193802SMatthew G. Knepley ierr = VecSetSizes(shifts, numShifts, numShifts);CHKERRQ(ierr); 150223193802SMatthew G. Knepley ierr = VecSetType(shifts, VECSTANDARD);CHKERRQ(ierr); 150323193802SMatthew G. Knepley ierr = VecSetRandom(shifts, r);CHKERRQ(ierr); 150423193802SMatthew G. Knepley ierr = PetscRandomDestroy(&r);CHKERRQ(ierr); 150523193802SMatthew G. Knepley ierr = VecGetArrayRead(shifts, &shift);CHKERRQ(ierr); 150623193802SMatthew G. Knepley } 150723193802SMatthew G. Knepley 150823193802SMatthew G. Knepley /* Point ownership vote: Process with highest rank owns shared points */ 1509f5bf2dbfSMichael Lange for (p = 0; p < nleaves; ++p) { 151023193802SMatthew G. Knepley if (shiftDebug) { 151123193802SMatthew G. Knepley ierr = PetscSynchronizedPrintf(PetscObjectComm((PetscObject) dm), "[%d] Point %D RemotePoint %D Shift %D MyRank %D\n", rank, leaves ? leaves[p] : p, roots[p].index, (PetscInt) shift[roots[p].index%numShifts], (rank + (shift ? (PetscInt) shift[roots[p].index%numShifts] : 0))%size);CHKERRQ(ierr); 151223193802SMatthew G. Knepley } 1513f5bf2dbfSMichael Lange /* Either put in a bid or we know we own it */ 151423193802SMatthew G. Knepley leafNodes[p].rank = (rank + (shift ? (PetscInt) shift[roots[p].index%numShifts] : 0))%size; 151543f7d02bSMichael Lange leafNodes[p].index = p; 1516f5bf2dbfSMichael Lange } 1517f5bf2dbfSMichael Lange for (p = 0; p < nroots; p++) { 15181627f6ccSMichael Lange /* Root must not participate in the reduction, flag so that MAXLOC does not use */ 1519f5bf2dbfSMichael Lange rootNodes[p].rank = -3; 1520f5bf2dbfSMichael Lange rootNodes[p].index = -3; 1521f5bf2dbfSMichael Lange } 1522f5bf2dbfSMichael Lange ierr = PetscSFReduceBegin(migrationSF, MPIU_2INT, leafNodes, rootNodes, MPI_MAXLOC);CHKERRQ(ierr); 1523f5bf2dbfSMichael Lange ierr = PetscSFReduceEnd(migrationSF, MPIU_2INT, leafNodes, rootNodes, MPI_MAXLOC);CHKERRQ(ierr); 1524f5bf2dbfSMichael Lange } else { 1525f5bf2dbfSMichael Lange for (p = 0; p < nroots; p++) { 1526f5bf2dbfSMichael Lange rootNodes[p].index = -1; 1527f5bf2dbfSMichael Lange rootNodes[p].rank = rank; 1528f5bf2dbfSMichael Lange }; 1529f5bf2dbfSMichael Lange for (p = 0; p < nleaves; p++) { 1530f5bf2dbfSMichael Lange /* Write new local id into old location */ 1531f5bf2dbfSMichael Lange if (roots[p].rank == rank) { 15326462276dSToby Isaac rootNodes[roots[p].index].index = leaves ? leaves[p] : p; 1533f5bf2dbfSMichael Lange } 1534f5bf2dbfSMichael Lange } 1535f5bf2dbfSMichael Lange } 1536f5bf2dbfSMichael Lange ierr = PetscSFBcastBegin(migrationSF, MPIU_2INT, rootNodes, leafNodes);CHKERRQ(ierr); 1537f5bf2dbfSMichael Lange ierr = PetscSFBcastEnd(migrationSF, MPIU_2INT, rootNodes, leafNodes);CHKERRQ(ierr); 1538f5bf2dbfSMichael Lange 153923193802SMatthew G. Knepley for (npointLeaves = 0, p = 0; p < nleaves; p++) { 154023193802SMatthew G. Knepley if (shiftDebug) { 154123193802SMatthew G. Knepley ierr = PetscSynchronizedPrintf(PetscObjectComm((PetscObject) dm), "[%d] Root %D, Rank %D MyRank %D\n", rank, roots[p].index, leafNodes[p].rank, (rank + (shift ? (PetscInt) shift[roots[p].index%numShifts] : 0))%size);CHKERRQ(ierr); 154223193802SMatthew G. Knepley } 154323193802SMatthew G. Knepley if (leafNodes[p].rank != (rank + (shift ? (PetscInt) shift[roots[p].index%numShifts] : 0))%size) npointLeaves++; 154423193802SMatthew G. Knepley } 15451627f6ccSMichael Lange ierr = PetscMalloc1(npointLeaves, &pointLocal);CHKERRQ(ierr); 15461627f6ccSMichael Lange ierr = PetscMalloc1(npointLeaves, &pointRemote);CHKERRQ(ierr); 1547f5bf2dbfSMichael Lange for (idx = 0, p = 0; p < nleaves; p++) { 154823193802SMatthew G. Knepley if (leafNodes[p].rank != (rank + (shift ? (PetscInt) shift[roots[p].index%numShifts] : 0))%size) { 1549f5bf2dbfSMichael Lange pointLocal[idx] = p; 1550f5bf2dbfSMichael Lange pointRemote[idx] = leafNodes[p]; 1551f5bf2dbfSMichael Lange idx++; 1552f5bf2dbfSMichael Lange } 1553f5bf2dbfSMichael Lange } 155423193802SMatthew G. Knepley if (shift) { 155523193802SMatthew G. Knepley ierr = VecRestoreArrayRead(shifts, &shift);CHKERRQ(ierr); 155623193802SMatthew G. Knepley ierr = VecDestroy(&shifts);CHKERRQ(ierr); 155723193802SMatthew G. Knepley } 155823193802SMatthew G. Knepley if (shiftDebug) {ierr = PetscSynchronizedFlush(PetscObjectComm((PetscObject) dm), PETSC_STDOUT);CHKERRQ(ierr);} 1559f5bf2dbfSMichael Lange ierr = PetscSFCreate(PetscObjectComm((PetscObject) dm), pointSF);CHKERRQ(ierr); 15601627f6ccSMichael Lange ierr = PetscSFSetFromOptions(*pointSF);CHKERRQ(ierr); 1561f5bf2dbfSMichael Lange ierr = PetscSFSetGraph(*pointSF, nleaves, npointLeaves, pointLocal, PETSC_OWN_POINTER, pointRemote, PETSC_OWN_POINTER);CHKERRQ(ierr); 1562f5bf2dbfSMichael Lange ierr = PetscFree2(rootNodes, leafNodes);CHKERRQ(ierr); 1563f5bf2dbfSMichael Lange PetscFunctionReturn(0); 1564f5bf2dbfSMichael Lange } 1565f5bf2dbfSMichael Lange 156615078cd4SMichael Lange /*@C 156715078cd4SMichael Lange DMPlexMigrate - Migrates internal DM data over the supplied star forest 156815078cd4SMichael Lange 156915078cd4SMichael Lange Input Parameter: 157015078cd4SMichael Lange + dm - The source DMPlex object 15711627f6ccSMichael Lange . sf - The star forest communication context describing the migration pattern 157215078cd4SMichael Lange 157315078cd4SMichael Lange Output Parameter: 157415078cd4SMichael Lange - targetDM - The target DMPlex object 157515078cd4SMichael Lange 1576b9f40539SMichael Lange Level: intermediate 157715078cd4SMichael Lange 157815078cd4SMichael Lange .seealso: DMPlexDistribute(), DMPlexDistributeOverlap() 157915078cd4SMichael Lange @*/ 1580b9f40539SMichael Lange PetscErrorCode DMPlexMigrate(DM dm, PetscSF sf, DM targetDM) 158115078cd4SMichael Lange { 1582b9f40539SMichael Lange MPI_Comm comm; 1583b9f40539SMichael Lange PetscInt dim, nroots; 1584b9f40539SMichael Lange PetscSF sfPoint; 158515078cd4SMichael Lange ISLocalToGlobalMapping ltogMigration; 1586ac04eaf7SToby Isaac ISLocalToGlobalMapping ltogOriginal = NULL; 1587b9f40539SMichael Lange PetscBool flg; 158815078cd4SMichael Lange PetscErrorCode ierr; 158915078cd4SMichael Lange 159015078cd4SMichael Lange PetscFunctionBegin; 159115078cd4SMichael Lange PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 15921b858b30SMichael Lange ierr = PetscLogEventBegin(DMPLEX_Migrate, dm, 0, 0, 0);CHKERRQ(ierr); 1593b9f40539SMichael Lange ierr = PetscObjectGetComm((PetscObject) dm, &comm);CHKERRQ(ierr); 159415078cd4SMichael Lange ierr = DMGetDimension(dm, &dim);CHKERRQ(ierr); 159515078cd4SMichael Lange ierr = DMSetDimension(targetDM, dim);CHKERRQ(ierr); 159615078cd4SMichael Lange 1597bfb0467fSMichael Lange /* Check for a one-to-all distribution pattern */ 1598b9f40539SMichael Lange ierr = DMGetPointSF(dm, &sfPoint);CHKERRQ(ierr); 1599b9f40539SMichael Lange ierr = PetscSFGetGraph(sfPoint, &nroots, NULL, NULL, NULL);CHKERRQ(ierr); 1600bfb0467fSMichael Lange if (nroots >= 0) { 1601b9f40539SMichael Lange IS isOriginal; 1602ac04eaf7SToby Isaac PetscInt n, size, nleaves; 1603ac04eaf7SToby Isaac PetscInt *numbering_orig, *numbering_new; 1604b9f40539SMichael Lange /* Get the original point numbering */ 1605b9f40539SMichael Lange ierr = DMPlexCreatePointNumbering(dm, &isOriginal);CHKERRQ(ierr); 1606b9f40539SMichael Lange ierr = ISLocalToGlobalMappingCreateIS(isOriginal, <ogOriginal);CHKERRQ(ierr); 1607b9f40539SMichael Lange ierr = ISLocalToGlobalMappingGetSize(ltogOriginal, &size);CHKERRQ(ierr); 1608b9f40539SMichael Lange ierr = ISLocalToGlobalMappingGetBlockIndices(ltogOriginal, (const PetscInt**)&numbering_orig);CHKERRQ(ierr); 1609b9f40539SMichael Lange /* Convert to positive global numbers */ 1610b9f40539SMichael Lange for (n=0; n<size; n++) {if (numbering_orig[n] < 0) numbering_orig[n] = -(numbering_orig[n]+1);} 1611b9f40539SMichael Lange /* Derive the new local-to-global mapping from the old one */ 1612b9f40539SMichael Lange ierr = PetscSFGetGraph(sf, NULL, &nleaves, NULL, NULL);CHKERRQ(ierr); 1613b9f40539SMichael Lange ierr = PetscMalloc1(nleaves, &numbering_new);CHKERRQ(ierr); 1614b9f40539SMichael Lange ierr = PetscSFBcastBegin(sf, MPIU_INT, (PetscInt *) numbering_orig, numbering_new);CHKERRQ(ierr); 1615b9f40539SMichael Lange ierr = PetscSFBcastEnd(sf, MPIU_INT, (PetscInt *) numbering_orig, numbering_new);CHKERRQ(ierr); 1616b9f40539SMichael Lange ierr = ISLocalToGlobalMappingCreate(comm, 1, nleaves, (const PetscInt*) numbering_new, PETSC_OWN_POINTER, <ogMigration);CHKERRQ(ierr); 1617b9f40539SMichael Lange ierr = ISLocalToGlobalMappingRestoreIndices(ltogOriginal, (const PetscInt**)&numbering_orig);CHKERRQ(ierr); 1618b9f40539SMichael Lange ierr = ISDestroy(&isOriginal);CHKERRQ(ierr); 161915078cd4SMichael Lange } else { 1620bfb0467fSMichael Lange /* One-to-all distribution pattern: We can derive LToG from SF */ 162115078cd4SMichael Lange ierr = ISLocalToGlobalMappingCreateSF(sf, 0, <ogMigration);CHKERRQ(ierr); 162215078cd4SMichael Lange } 1623c5929fdfSBarry Smith ierr = PetscOptionsHasName(((PetscObject) dm)->options,((PetscObject) dm)->prefix, "-partition_view", &flg);CHKERRQ(ierr); 1624b9f40539SMichael Lange if (flg) { 1625b9f40539SMichael Lange ierr = PetscPrintf(comm, "Point renumbering for DM migration:\n");CHKERRQ(ierr); 1626b9f40539SMichael Lange ierr = ISLocalToGlobalMappingView(ltogMigration, NULL);CHKERRQ(ierr); 1627b9f40539SMichael Lange } 162815078cd4SMichael Lange /* Migrate DM data to target DM */ 1629ac04eaf7SToby Isaac ierr = DMPlexDistributeCones(dm, sf, ltogOriginal, ltogMigration, targetDM);CHKERRQ(ierr); 163015078cd4SMichael Lange ierr = DMPlexDistributeLabels(dm, sf, targetDM);CHKERRQ(ierr); 16310dc1530dSSander Arens ierr = DMPlexDistributeCoordinates(dm, sf, targetDM);CHKERRQ(ierr); 163215078cd4SMichael Lange ierr = DMPlexDistributeSetupHybrid(dm, sf, ltogMigration, targetDM);CHKERRQ(ierr); 163308633170SToby Isaac ierr = DMPlexDistributeSetupTree(dm, sf, ltogOriginal, ltogMigration, targetDM);CHKERRQ(ierr); 1634ac04eaf7SToby Isaac ierr = ISLocalToGlobalMappingDestroy(<ogOriginal);CHKERRQ(ierr); 1635302440fdSBarry Smith ierr = ISLocalToGlobalMappingDestroy(<ogMigration);CHKERRQ(ierr); 16361b858b30SMichael Lange ierr = PetscLogEventEnd(DMPLEX_Migrate, dm, 0, 0, 0);CHKERRQ(ierr); 163715078cd4SMichael Lange PetscFunctionReturn(0); 163815078cd4SMichael Lange } 163915078cd4SMichael Lange 16403b8f15a2SMatthew G. Knepley /*@C 164170034214SMatthew G. Knepley DMPlexDistribute - Distributes the mesh and any associated sections. 164270034214SMatthew G. Knepley 164370034214SMatthew G. Knepley Not Collective 164470034214SMatthew G. Knepley 164570034214SMatthew G. Knepley Input Parameter: 164670034214SMatthew G. Knepley + dm - The original DMPlex object 164770034214SMatthew G. Knepley - overlap - The overlap of partitions, 0 is the default 164870034214SMatthew G. Knepley 164970034214SMatthew G. Knepley Output Parameter: 165070034214SMatthew G. Knepley + sf - The PetscSF used for point distribution 165170034214SMatthew G. Knepley - parallelMesh - The distributed DMPlex object, or NULL 165270034214SMatthew G. Knepley 165370034214SMatthew G. Knepley Note: If the mesh was not distributed, the return value is NULL. 165470034214SMatthew G. Knepley 165593a1dc33SMatthew G. Knepley The user can control the definition of adjacency for the mesh using DMPlexSetAdjacencyUseCone() and 165670034214SMatthew G. Knepley DMPlexSetAdjacencyUseClosure(). They should choose the combination appropriate for the function 165770034214SMatthew G. Knepley representation on the mesh. 165870034214SMatthew G. Knepley 165970034214SMatthew G. Knepley Level: intermediate 166070034214SMatthew G. Knepley 166170034214SMatthew G. Knepley .keywords: mesh, elements 166270034214SMatthew G. Knepley .seealso: DMPlexCreate(), DMPlexDistributeByFace(), DMPlexSetAdjacencyUseCone(), DMPlexSetAdjacencyUseClosure() 166370034214SMatthew G. Knepley @*/ 166480cf41d5SMatthew G. Knepley PetscErrorCode DMPlexDistribute(DM dm, PetscInt overlap, PetscSF *sf, DM *dmParallel) 166570034214SMatthew G. Knepley { 166670034214SMatthew G. Knepley MPI_Comm comm; 166715078cd4SMichael Lange PetscPartitioner partitioner; 1668f8987ae8SMichael Lange IS cellPart; 1669f8987ae8SMichael Lange PetscSection cellPartSection; 1670cf86098cSMatthew G. Knepley DM dmCoord; 1671f8987ae8SMichael Lange DMLabel lblPartition, lblMigration; 167243f7d02bSMichael Lange PetscSF sfProcess, sfMigration, sfStratified, sfPoint; 167370034214SMatthew G. Knepley PetscBool flg; 16749852e123SBarry Smith PetscMPIInt rank, size, p; 167570034214SMatthew G. Knepley PetscErrorCode ierr; 167670034214SMatthew G. Knepley 167770034214SMatthew G. Knepley PetscFunctionBegin; 167870034214SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 167970034214SMatthew G. Knepley if (sf) PetscValidPointer(sf,4); 168070034214SMatthew G. Knepley PetscValidPointer(dmParallel,5); 168170034214SMatthew G. Knepley 168270034214SMatthew G. Knepley ierr = PetscLogEventBegin(DMPLEX_Distribute,dm,0,0,0);CHKERRQ(ierr); 168370034214SMatthew G. Knepley ierr = PetscObjectGetComm((PetscObject)dm,&comm);CHKERRQ(ierr); 168470034214SMatthew G. Knepley ierr = MPI_Comm_rank(comm, &rank);CHKERRQ(ierr); 16859852e123SBarry Smith ierr = MPI_Comm_size(comm, &size);CHKERRQ(ierr); 168670034214SMatthew G. Knepley 1687a6ba33f0SVaclav Hapla if (sf) *sf = NULL; 168870034214SMatthew G. Knepley *dmParallel = NULL; 16899852e123SBarry Smith if (size == 1) { 16905f3267c8SKoos Huijssen ierr = PetscLogEventEnd(DMPLEX_Distribute,dm,0,0,0);CHKERRQ(ierr); 16915f3267c8SKoos Huijssen PetscFunctionReturn(0); 16925f3267c8SKoos Huijssen } 169370034214SMatthew G. Knepley 169415078cd4SMichael Lange /* Create cell partition */ 169577623264SMatthew G. Knepley ierr = PetscLogEventBegin(PETSCPARTITIONER_Partition,dm,0,0,0);CHKERRQ(ierr); 169677623264SMatthew G. Knepley ierr = PetscSectionCreate(comm, &cellPartSection);CHKERRQ(ierr); 169715078cd4SMichael Lange ierr = DMPlexGetPartitioner(dm, &partitioner);CHKERRQ(ierr); 169815078cd4SMichael Lange ierr = PetscPartitionerPartition(partitioner, dm, cellPartSection, &cellPart);CHKERRQ(ierr); 1699f8987ae8SMichael Lange { 1700f8987ae8SMichael Lange /* Convert partition to DMLabel */ 1701f8987ae8SMichael Lange PetscInt proc, pStart, pEnd, npoints, poffset; 1702f8987ae8SMichael Lange const PetscInt *points; 1703f8987ae8SMichael Lange ierr = DMLabelCreate("Point Partition", &lblPartition);CHKERRQ(ierr); 1704f8987ae8SMichael Lange ierr = ISGetIndices(cellPart, &points);CHKERRQ(ierr); 1705f8987ae8SMichael Lange ierr = PetscSectionGetChart(cellPartSection, &pStart, &pEnd);CHKERRQ(ierr); 1706f8987ae8SMichael Lange for (proc = pStart; proc < pEnd; proc++) { 1707f8987ae8SMichael Lange ierr = PetscSectionGetDof(cellPartSection, proc, &npoints);CHKERRQ(ierr); 1708f8987ae8SMichael Lange ierr = PetscSectionGetOffset(cellPartSection, proc, &poffset);CHKERRQ(ierr); 1709f8987ae8SMichael Lange for (p = poffset; p < poffset+npoints; p++) { 1710f8987ae8SMichael Lange ierr = DMLabelSetValue(lblPartition, points[p], proc);CHKERRQ(ierr); 171170034214SMatthew G. Knepley } 1712f8987ae8SMichael Lange } 1713f8987ae8SMichael Lange ierr = ISRestoreIndices(cellPart, &points);CHKERRQ(ierr); 1714f8987ae8SMichael Lange } 1715f8987ae8SMichael Lange ierr = DMPlexPartitionLabelClosure(dm, lblPartition);CHKERRQ(ierr); 1716f8987ae8SMichael Lange { 1717f8987ae8SMichael Lange /* Build a global process SF */ 1718f8987ae8SMichael Lange PetscSFNode *remoteProc; 17199852e123SBarry Smith ierr = PetscMalloc1(size, &remoteProc);CHKERRQ(ierr); 17209852e123SBarry Smith for (p = 0; p < size; ++p) { 1721f8987ae8SMichael Lange remoteProc[p].rank = p; 1722f8987ae8SMichael Lange remoteProc[p].index = rank; 1723f8987ae8SMichael Lange } 1724f8987ae8SMichael Lange ierr = PetscSFCreate(comm, &sfProcess);CHKERRQ(ierr); 1725f8987ae8SMichael Lange ierr = PetscObjectSetName((PetscObject) sfProcess, "Process SF");CHKERRQ(ierr); 17269852e123SBarry Smith ierr = PetscSFSetGraph(sfProcess, size, size, NULL, PETSC_OWN_POINTER, remoteProc, PETSC_OWN_POINTER);CHKERRQ(ierr); 1727f8987ae8SMichael Lange } 1728f8987ae8SMichael Lange ierr = DMLabelCreate("Point migration", &lblMigration);CHKERRQ(ierr); 1729f8987ae8SMichael Lange ierr = DMPlexPartitionLabelInvert(dm, lblPartition, sfProcess, lblMigration);CHKERRQ(ierr); 1730302440fdSBarry Smith ierr = DMPlexPartitionLabelCreateSF(dm, lblMigration, &sfMigration);CHKERRQ(ierr); 173143f7d02bSMichael Lange /* Stratify the SF in case we are migrating an already parallel plex */ 173243f7d02bSMichael Lange ierr = DMPlexStratifyMigrationSF(dm, sfMigration, &sfStratified);CHKERRQ(ierr); 173343f7d02bSMichael Lange ierr = PetscSFDestroy(&sfMigration);CHKERRQ(ierr); 173443f7d02bSMichael Lange sfMigration = sfStratified; 1735f8987ae8SMichael Lange ierr = PetscLogEventEnd(PETSCPARTITIONER_Partition,dm,0,0,0);CHKERRQ(ierr); 1736c5929fdfSBarry Smith ierr = PetscOptionsHasName(((PetscObject) dm)->options,((PetscObject) dm)->prefix, "-partition_view", &flg);CHKERRQ(ierr); 173770034214SMatthew G. Knepley if (flg) { 1738f8987ae8SMichael Lange ierr = DMLabelView(lblPartition, PETSC_VIEWER_STDOUT_WORLD);CHKERRQ(ierr); 1739f8987ae8SMichael Lange ierr = PetscSFView(sfMigration, PETSC_VIEWER_STDOUT_WORLD);CHKERRQ(ierr); 174070034214SMatthew G. Knepley } 1741f8987ae8SMichael Lange 174215078cd4SMichael Lange /* Create non-overlapping parallel DM and migrate internal data */ 174370034214SMatthew G. Knepley ierr = DMPlexCreate(comm, dmParallel);CHKERRQ(ierr); 174470034214SMatthew G. Knepley ierr = PetscObjectSetName((PetscObject) *dmParallel, "Parallel Mesh");CHKERRQ(ierr); 1745b9f40539SMichael Lange ierr = DMPlexMigrate(dm, sfMigration, *dmParallel);CHKERRQ(ierr); 174670034214SMatthew G. Knepley 1747a157612eSMichael Lange /* Build the point SF without overlap */ 174855d961f0SMatthew G. Knepley ((DM_Plex*) (*dmParallel)->data)->partitionBalance = ((DM_Plex*) dm->data)->partitionBalance; 17491627f6ccSMichael Lange ierr = DMPlexCreatePointSF(*dmParallel, sfMigration, PETSC_TRUE, &sfPoint);CHKERRQ(ierr); 1750f5bf2dbfSMichael Lange ierr = DMSetPointSF(*dmParallel, sfPoint);CHKERRQ(ierr); 1751cf86098cSMatthew G. Knepley ierr = DMGetCoordinateDM(*dmParallel, &dmCoord);CHKERRQ(ierr); 1752cf86098cSMatthew G. Knepley if (dmCoord) {ierr = DMSetPointSF(dmCoord, sfPoint);CHKERRQ(ierr);} 1753f5bf2dbfSMichael Lange if (flg) {ierr = PetscSFView(sfPoint, PETSC_VIEWER_STDOUT_WORLD);CHKERRQ(ierr);} 175470034214SMatthew G. Knepley 1755a157612eSMichael Lange if (overlap > 0) { 175615078cd4SMichael Lange DM dmOverlap; 175715078cd4SMichael Lange PetscInt nroots, nleaves; 175815078cd4SMichael Lange PetscSFNode *newRemote; 175915078cd4SMichael Lange const PetscSFNode *oldRemote; 176015078cd4SMichael Lange PetscSF sfOverlap, sfOverlapPoint; 1761a157612eSMichael Lange /* Add the partition overlap to the distributed DM */ 1762b9f40539SMichael Lange ierr = DMPlexDistributeOverlap(*dmParallel, overlap, &sfOverlap, &dmOverlap);CHKERRQ(ierr); 1763a157612eSMichael Lange ierr = DMDestroy(dmParallel);CHKERRQ(ierr); 1764a157612eSMichael Lange *dmParallel = dmOverlap; 1765c389ea9fSToby Isaac if (flg) { 17663d822a50SMichael Lange ierr = PetscPrintf(comm, "Overlap Migration SF:\n");CHKERRQ(ierr); 176715078cd4SMichael Lange ierr = PetscSFView(sfOverlap, NULL);CHKERRQ(ierr); 1768c389ea9fSToby Isaac } 176943331d4aSMichael Lange 1770f8987ae8SMichael Lange /* Re-map the migration SF to establish the full migration pattern */ 1771f8987ae8SMichael Lange ierr = PetscSFGetGraph(sfMigration, &nroots, NULL, NULL, &oldRemote);CHKERRQ(ierr); 177215078cd4SMichael Lange ierr = PetscSFGetGraph(sfOverlap, NULL, &nleaves, NULL, NULL);CHKERRQ(ierr); 177343331d4aSMichael Lange ierr = PetscMalloc1(nleaves, &newRemote);CHKERRQ(ierr); 177415078cd4SMichael Lange ierr = PetscSFBcastBegin(sfOverlap, MPIU_2INT, oldRemote, newRemote);CHKERRQ(ierr); 177515078cd4SMichael Lange ierr = PetscSFBcastEnd(sfOverlap, MPIU_2INT, oldRemote, newRemote);CHKERRQ(ierr); 177615078cd4SMichael Lange ierr = PetscSFCreate(comm, &sfOverlapPoint);CHKERRQ(ierr); 177715078cd4SMichael Lange ierr = PetscSFSetGraph(sfOverlapPoint, nroots, nleaves, NULL, PETSC_OWN_POINTER, newRemote, PETSC_OWN_POINTER);CHKERRQ(ierr); 177815078cd4SMichael Lange ierr = PetscSFDestroy(&sfOverlap);CHKERRQ(ierr); 1779f8987ae8SMichael Lange ierr = PetscSFDestroy(&sfMigration);CHKERRQ(ierr); 178015078cd4SMichael Lange sfMigration = sfOverlapPoint; 1781c389ea9fSToby Isaac } 1782bf5244c7SMatthew G. Knepley /* Cleanup Partition */ 1783f8987ae8SMichael Lange ierr = PetscSFDestroy(&sfProcess);CHKERRQ(ierr); 1784f8987ae8SMichael Lange ierr = DMLabelDestroy(&lblPartition);CHKERRQ(ierr); 1785f8987ae8SMichael Lange ierr = DMLabelDestroy(&lblMigration);CHKERRQ(ierr); 17864eca1733SMichael Lange ierr = PetscSectionDestroy(&cellPartSection);CHKERRQ(ierr); 17874eca1733SMichael Lange ierr = ISDestroy(&cellPart);CHKERRQ(ierr); 1788721cbd76SMatthew G. Knepley /* Copy BC */ 1789a6ba4734SToby Isaac ierr = DMCopyBoundary(dm, *dmParallel);CHKERRQ(ierr); 179066fe0bfeSMatthew G. Knepley /* Create sfNatural */ 179166fe0bfeSMatthew G. Knepley if (dm->useNatural) { 179266fe0bfeSMatthew G. Knepley PetscSection section; 179366fe0bfeSMatthew G. Knepley 179466fe0bfeSMatthew G. Knepley ierr = DMGetDefaultSection(dm, §ion);CHKERRQ(ierr); 17950c1f158bSMatthew G. Knepley ierr = DMPlexCreateGlobalToNaturalSF(*dmParallel, section, sfMigration, &(*dmParallel)->sfNatural);CHKERRQ(ierr); 17960e663481SBlaise Bourdin ierr = DMSetUseNatural(*dmParallel, PETSC_TRUE);CHKERRQ(ierr); 179766fe0bfeSMatthew G. Knepley } 1798721cbd76SMatthew G. Knepley /* Cleanup */ 1799f8987ae8SMichael Lange if (sf) {*sf = sfMigration;} 1800f8987ae8SMichael Lange else {ierr = PetscSFDestroy(&sfMigration);CHKERRQ(ierr);} 1801f5bf2dbfSMichael Lange ierr = PetscSFDestroy(&sfPoint);CHKERRQ(ierr); 180270034214SMatthew G. Knepley ierr = PetscLogEventEnd(DMPLEX_Distribute,dm,0,0,0);CHKERRQ(ierr); 180370034214SMatthew G. Knepley PetscFunctionReturn(0); 180470034214SMatthew G. Knepley } 1805a157612eSMichael Lange 1806a157612eSMichael Lange /*@C 180724cc2ca5SMatthew G. Knepley DMPlexDistributeOverlap - Add partition overlap to a distributed non-overlapping DM. 1808a157612eSMichael Lange 1809a157612eSMichael Lange Not Collective 1810a157612eSMichael Lange 1811a157612eSMichael Lange Input Parameter: 1812a157612eSMichael Lange + dm - The non-overlapping distrbuted DMPlex object 1813a157612eSMichael Lange - overlap - The overlap of partitions, 0 is the default 1814a157612eSMichael Lange 1815a157612eSMichael Lange Output Parameter: 1816a157612eSMichael Lange + sf - The PetscSF used for point distribution 1817a157612eSMichael Lange - dmOverlap - The overlapping distributed DMPlex object, or NULL 1818a157612eSMichael Lange 1819a157612eSMichael Lange Note: If the mesh was not distributed, the return value is NULL. 1820a157612eSMichael Lange 1821a157612eSMichael Lange The user can control the definition of adjacency for the mesh using DMPlexGetAdjacencyUseCone() and 1822a157612eSMichael Lange DMPlexSetAdjacencyUseClosure(). They should choose the combination appropriate for the function 1823a157612eSMichael Lange representation on the mesh. 1824a157612eSMichael Lange 1825a157612eSMichael Lange Level: intermediate 1826a157612eSMichael Lange 1827a157612eSMichael Lange .keywords: mesh, elements 1828a157612eSMichael Lange .seealso: DMPlexCreate(), DMPlexDistributeByFace(), DMPlexSetAdjacencyUseCone(), DMPlexSetAdjacencyUseClosure() 1829a157612eSMichael Lange @*/ 1830b9f40539SMichael Lange PetscErrorCode DMPlexDistributeOverlap(DM dm, PetscInt overlap, PetscSF *sf, DM *dmOverlap) 1831a157612eSMichael Lange { 1832a157612eSMichael Lange MPI_Comm comm; 18333567eaeeSMatthew G. Knepley PetscMPIInt size, rank; 1834a157612eSMichael Lange PetscSection rootSection, leafSection; 1835a157612eSMichael Lange IS rootrank, leafrank; 1836cf86098cSMatthew G. Knepley DM dmCoord; 1837a9f1d5b2SMichael Lange DMLabel lblOverlap; 1838f5bf2dbfSMichael Lange PetscSF sfOverlap, sfStratified, sfPoint; 1839a157612eSMichael Lange PetscErrorCode ierr; 1840a157612eSMichael Lange 1841a157612eSMichael Lange PetscFunctionBegin; 1842a157612eSMichael Lange PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 1843a157612eSMichael Lange if (sf) PetscValidPointer(sf, 3); 1844a157612eSMichael Lange PetscValidPointer(dmOverlap, 4); 1845a157612eSMichael Lange 1846a157612eSMichael Lange ierr = PetscObjectGetComm((PetscObject)dm,&comm);CHKERRQ(ierr); 18473567eaeeSMatthew G. Knepley ierr = MPI_Comm_size(comm, &size);CHKERRQ(ierr); 1848a157612eSMichael Lange ierr = MPI_Comm_rank(comm, &rank);CHKERRQ(ierr); 18493567eaeeSMatthew G. Knepley if (size == 1) {*dmOverlap = NULL; PetscFunctionReturn(0);} 18503567eaeeSMatthew G. Knepley ierr = PetscLogEventBegin(DMPLEX_DistributeOverlap, dm, 0, 0, 0);CHKERRQ(ierr); 1851a157612eSMichael Lange 1852a157612eSMichael Lange /* Compute point overlap with neighbouring processes on the distributed DM */ 1853a157612eSMichael Lange ierr = PetscLogEventBegin(PETSCPARTITIONER_Partition,dm,0,0,0);CHKERRQ(ierr); 1854a157612eSMichael Lange ierr = PetscSectionCreate(comm, &rootSection);CHKERRQ(ierr); 1855a157612eSMichael Lange ierr = PetscSectionCreate(comm, &leafSection);CHKERRQ(ierr); 1856a157612eSMichael Lange ierr = DMPlexDistributeOwnership(dm, rootSection, &rootrank, leafSection, &leafrank);CHKERRQ(ierr); 1857a9f1d5b2SMichael Lange ierr = DMPlexCreateOverlap(dm, overlap, rootSection, rootrank, leafSection, leafrank, &lblOverlap);CHKERRQ(ierr); 1858a9f1d5b2SMichael Lange /* Convert overlap label to stratified migration SF */ 1859a9f1d5b2SMichael Lange ierr = DMPlexPartitionLabelCreateSF(dm, lblOverlap, &sfOverlap);CHKERRQ(ierr); 1860a9f1d5b2SMichael Lange ierr = DMPlexStratifyMigrationSF(dm, sfOverlap, &sfStratified);CHKERRQ(ierr); 1861a9f1d5b2SMichael Lange ierr = PetscSFDestroy(&sfOverlap);CHKERRQ(ierr); 1862a9f1d5b2SMichael Lange sfOverlap = sfStratified; 1863a9f1d5b2SMichael Lange ierr = PetscObjectSetName((PetscObject) sfOverlap, "Overlap SF");CHKERRQ(ierr); 1864a9f1d5b2SMichael Lange ierr = PetscSFSetFromOptions(sfOverlap);CHKERRQ(ierr); 1865a9f1d5b2SMichael Lange 186615fff7beSMatthew G. Knepley ierr = PetscSectionDestroy(&rootSection);CHKERRQ(ierr); 186715fff7beSMatthew G. Knepley ierr = PetscSectionDestroy(&leafSection);CHKERRQ(ierr); 186815fff7beSMatthew G. Knepley ierr = ISDestroy(&rootrank);CHKERRQ(ierr); 186915fff7beSMatthew G. Knepley ierr = ISDestroy(&leafrank);CHKERRQ(ierr); 1870a157612eSMichael Lange ierr = PetscLogEventEnd(PETSCPARTITIONER_Partition,dm,0,0,0);CHKERRQ(ierr); 1871a157612eSMichael Lange 1872a157612eSMichael Lange /* Build the overlapping DM */ 1873a157612eSMichael Lange ierr = DMPlexCreate(comm, dmOverlap);CHKERRQ(ierr); 1874a157612eSMichael Lange ierr = PetscObjectSetName((PetscObject) *dmOverlap, "Parallel Mesh");CHKERRQ(ierr); 1875a9f1d5b2SMichael Lange ierr = DMPlexMigrate(dm, sfOverlap, *dmOverlap);CHKERRQ(ierr); 1876f5bf2dbfSMichael Lange /* Build the new point SF */ 18771627f6ccSMichael Lange ierr = DMPlexCreatePointSF(*dmOverlap, sfOverlap, PETSC_FALSE, &sfPoint);CHKERRQ(ierr); 1878f5bf2dbfSMichael Lange ierr = DMSetPointSF(*dmOverlap, sfPoint);CHKERRQ(ierr); 1879cf86098cSMatthew G. Knepley ierr = DMGetCoordinateDM(*dmOverlap, &dmCoord);CHKERRQ(ierr); 1880cf86098cSMatthew G. Knepley if (dmCoord) {ierr = DMSetPointSF(dmCoord, sfPoint);CHKERRQ(ierr);} 1881f5bf2dbfSMichael Lange ierr = PetscSFDestroy(&sfPoint);CHKERRQ(ierr); 1882a157612eSMichael Lange /* Cleanup overlap partition */ 1883a9f1d5b2SMichael Lange ierr = DMLabelDestroy(&lblOverlap);CHKERRQ(ierr); 1884a9f1d5b2SMichael Lange if (sf) *sf = sfOverlap; 1885a9f1d5b2SMichael Lange else {ierr = PetscSFDestroy(&sfOverlap);CHKERRQ(ierr);} 18861b858b30SMichael Lange ierr = PetscLogEventEnd(DMPLEX_DistributeOverlap, dm, 0, 0, 0);CHKERRQ(ierr); 1887a157612eSMichael Lange PetscFunctionReturn(0); 1888a157612eSMichael Lange } 18896462276dSToby Isaac 18906462276dSToby Isaac /*@C 18916462276dSToby Isaac DMPlexGetGatherDM - Get a copy of the DMPlex that gathers all points on the 18926462276dSToby Isaac root process of the original's communicator. 18936462276dSToby Isaac 18946462276dSToby Isaac Input Parameters: 18956462276dSToby Isaac . dm - the original DMPlex object 18966462276dSToby Isaac 18976462276dSToby Isaac Output Parameters: 18986462276dSToby Isaac . gatherMesh - the gathered DM object, or NULL 18996462276dSToby Isaac 19006462276dSToby Isaac Level: intermediate 19016462276dSToby Isaac 19026462276dSToby Isaac .keywords: mesh 19036462276dSToby Isaac .seealso: DMPlexDistribute(), DMPlexGetRedundantDM() 19046462276dSToby Isaac @*/ 19056462276dSToby Isaac PetscErrorCode DMPlexGetGatherDM(DM dm, DM * gatherMesh) 19066462276dSToby Isaac { 19076462276dSToby Isaac MPI_Comm comm; 19086462276dSToby Isaac PetscMPIInt size; 19096462276dSToby Isaac PetscPartitioner oldPart, gatherPart; 19106462276dSToby Isaac PetscErrorCode ierr; 19116462276dSToby Isaac 19126462276dSToby Isaac PetscFunctionBegin; 19136462276dSToby Isaac PetscValidHeaderSpecific(dm,DM_CLASSID,1); 19146462276dSToby Isaac comm = PetscObjectComm((PetscObject)dm); 19156462276dSToby Isaac ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 19166462276dSToby Isaac *gatherMesh = NULL; 19176462276dSToby Isaac if (size == 1) PetscFunctionReturn(0); 19186462276dSToby Isaac ierr = DMPlexGetPartitioner(dm,&oldPart);CHKERRQ(ierr); 19196462276dSToby Isaac ierr = PetscObjectReference((PetscObject)oldPart);CHKERRQ(ierr); 19206462276dSToby Isaac ierr = PetscPartitionerCreate(comm,&gatherPart);CHKERRQ(ierr); 19216462276dSToby Isaac ierr = PetscPartitionerSetType(gatherPart,PETSCPARTITIONERGATHER);CHKERRQ(ierr); 19226462276dSToby Isaac ierr = DMPlexSetPartitioner(dm,gatherPart);CHKERRQ(ierr); 19236462276dSToby Isaac ierr = DMPlexDistribute(dm,0,NULL,gatherMesh);CHKERRQ(ierr); 19246462276dSToby Isaac ierr = DMPlexSetPartitioner(dm,oldPart);CHKERRQ(ierr); 19256462276dSToby Isaac ierr = PetscPartitionerDestroy(&gatherPart);CHKERRQ(ierr); 19266462276dSToby Isaac ierr = PetscPartitionerDestroy(&oldPart);CHKERRQ(ierr); 19276462276dSToby Isaac PetscFunctionReturn(0); 19286462276dSToby Isaac } 19296462276dSToby Isaac 19306462276dSToby Isaac /*@C 19316462276dSToby Isaac DMPlexGetRedundantDM - Get a copy of the DMPlex that is completely copied on each process. 19326462276dSToby Isaac 19336462276dSToby Isaac Input Parameters: 19346462276dSToby Isaac . dm - the original DMPlex object 19356462276dSToby Isaac 19366462276dSToby Isaac Output Parameters: 19376462276dSToby Isaac . redundantMesh - the redundant DM object, or NULL 19386462276dSToby Isaac 19396462276dSToby Isaac Level: intermediate 19406462276dSToby Isaac 19416462276dSToby Isaac .keywords: mesh 19426462276dSToby Isaac .seealso: DMPlexDistribute(), DMPlexGetGatherDM() 19436462276dSToby Isaac @*/ 19446462276dSToby Isaac PetscErrorCode DMPlexGetRedundantDM(DM dm, DM * redundantMesh) 19456462276dSToby Isaac { 19466462276dSToby Isaac MPI_Comm comm; 19476462276dSToby Isaac PetscMPIInt size, rank; 19486462276dSToby Isaac PetscInt pStart, pEnd, p; 19496462276dSToby Isaac PetscInt numPoints = -1; 19506462276dSToby Isaac PetscSF migrationSF, sfPoint; 19516462276dSToby Isaac DM gatherDM, dmCoord; 19526462276dSToby Isaac PetscSFNode *points; 19536462276dSToby Isaac PetscErrorCode ierr; 19546462276dSToby Isaac 19556462276dSToby Isaac PetscFunctionBegin; 19566462276dSToby Isaac PetscValidHeaderSpecific(dm,DM_CLASSID,1); 19576462276dSToby Isaac comm = PetscObjectComm((PetscObject)dm); 19586462276dSToby Isaac ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 19596462276dSToby Isaac *redundantMesh = NULL; 196068dbc166SMatthew G. Knepley if (size == 1) { 196168dbc166SMatthew G. Knepley ierr = PetscObjectReference((PetscObject) dm);CHKERRQ(ierr); 196268dbc166SMatthew G. Knepley *redundantMesh = dm; 196368dbc166SMatthew G. Knepley PetscFunctionReturn(0); 196468dbc166SMatthew G. Knepley } 19656462276dSToby Isaac ierr = DMPlexGetGatherDM(dm,&gatherDM);CHKERRQ(ierr); 19666462276dSToby Isaac if (!gatherDM) PetscFunctionReturn(0); 19676462276dSToby Isaac ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 19686462276dSToby Isaac ierr = DMPlexGetChart(gatherDM,&pStart,&pEnd);CHKERRQ(ierr); 19696462276dSToby Isaac numPoints = pEnd - pStart; 19706462276dSToby Isaac ierr = MPI_Bcast(&numPoints,1,MPIU_INT,0,comm);CHKERRQ(ierr); 19716462276dSToby Isaac ierr = PetscMalloc1(numPoints,&points);CHKERRQ(ierr); 19726462276dSToby Isaac ierr = PetscSFCreate(comm,&migrationSF);CHKERRQ(ierr); 19736462276dSToby Isaac for (p = 0; p < numPoints; p++) { 19746462276dSToby Isaac points[p].index = p; 19756462276dSToby Isaac points[p].rank = 0; 19766462276dSToby Isaac } 19776462276dSToby Isaac ierr = PetscSFSetGraph(migrationSF,pEnd-pStart,numPoints,NULL,PETSC_OWN_POINTER,points,PETSC_OWN_POINTER);CHKERRQ(ierr); 19786462276dSToby Isaac ierr = DMPlexCreate(comm, redundantMesh);CHKERRQ(ierr); 19796462276dSToby Isaac ierr = PetscObjectSetName((PetscObject) *redundantMesh, "Redundant Mesh");CHKERRQ(ierr); 19806462276dSToby Isaac ierr = DMPlexMigrate(gatherDM, migrationSF, *redundantMesh);CHKERRQ(ierr); 19816462276dSToby Isaac ierr = DMPlexCreatePointSF(*redundantMesh, migrationSF, PETSC_FALSE, &sfPoint);CHKERRQ(ierr); 19826462276dSToby Isaac ierr = DMSetPointSF(*redundantMesh, sfPoint);CHKERRQ(ierr); 19836462276dSToby Isaac ierr = DMGetCoordinateDM(*redundantMesh, &dmCoord);CHKERRQ(ierr); 19846462276dSToby Isaac if (dmCoord) {ierr = DMSetPointSF(dmCoord, sfPoint);CHKERRQ(ierr);} 19856462276dSToby Isaac ierr = PetscSFDestroy(&sfPoint);CHKERRQ(ierr); 19866462276dSToby Isaac ierr = PetscSFDestroy(&migrationSF);CHKERRQ(ierr); 19876462276dSToby Isaac ierr = DMDestroy(&gatherDM);CHKERRQ(ierr); 19886462276dSToby Isaac PetscFunctionReturn(0); 19896462276dSToby Isaac } 1990