xref: /petsc/src/dm/impls/plex/plexdistribute.c (revision d1674c6dfee04d00cbffc0cac320b0882b763b3d)
1af0996ceSBarry Smith #include <petsc/private/dmpleximpl.h>    /*I      "petscdmplex.h"   I*/
2c58f1c22SToby Isaac #include <petsc/private/dmlabelimpl.h>   /*I      "petscdmlabel.h"  I*/
370034214SMatthew G. Knepley 
43c1f0c11SLawrence Mitchell /*@C
53c1f0c11SLawrence Mitchell   DMPlexSetAdjacencyUser - Define adjacency in the mesh using a user-provided callback
63c1f0c11SLawrence Mitchell 
73c1f0c11SLawrence Mitchell   Input Parameters:
83c1f0c11SLawrence Mitchell + dm      - The DM object
93c1f0c11SLawrence Mitchell . user    - The user callback, may be NULL (to clear the callback)
103c1f0c11SLawrence Mitchell - ctx     - context for callback evaluation, may be NULL
113c1f0c11SLawrence Mitchell 
123c1f0c11SLawrence Mitchell   Level: advanced
133c1f0c11SLawrence Mitchell 
143c1f0c11SLawrence Mitchell   Notes:
153c1f0c11SLawrence Mitchell      The caller of DMPlexGetAdjacency may need to arrange that a large enough array is available for the adjacency.
163c1f0c11SLawrence Mitchell 
173c1f0c11SLawrence Mitchell      Any setting here overrides other configuration of DMPlex adjacency determination.
183c1f0c11SLawrence Mitchell 
19b0441da4SMatthew G. Knepley .seealso: DMSetAdjacency(), DMPlexDistribute(), DMPlexPreallocateOperator(), DMPlexGetAdjacency(), DMPlexGetAdjacencyUser()
203c1f0c11SLawrence Mitchell @*/
213c1f0c11SLawrence Mitchell PetscErrorCode DMPlexSetAdjacencyUser(DM dm,PetscErrorCode (*user)(DM,PetscInt,PetscInt*,PetscInt[],void*),void *ctx)
223c1f0c11SLawrence Mitchell {
233c1f0c11SLawrence Mitchell   DM_Plex *mesh = (DM_Plex *)dm->data;
243c1f0c11SLawrence Mitchell 
253c1f0c11SLawrence Mitchell   PetscFunctionBegin;
263c1f0c11SLawrence Mitchell   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
273c1f0c11SLawrence Mitchell   mesh->useradjacency = user;
283c1f0c11SLawrence Mitchell   mesh->useradjacencyctx = ctx;
293c1f0c11SLawrence Mitchell   PetscFunctionReturn(0);
303c1f0c11SLawrence Mitchell }
313c1f0c11SLawrence Mitchell 
323c1f0c11SLawrence Mitchell /*@C
333c1f0c11SLawrence Mitchell   DMPlexGetAdjacencyUser - get the user-defined adjacency callback
343c1f0c11SLawrence Mitchell 
353c1f0c11SLawrence Mitchell   Input Parameter:
363c1f0c11SLawrence Mitchell . dm      - The DM object
373c1f0c11SLawrence Mitchell 
383c1f0c11SLawrence Mitchell   Output Parameters:
393c1f0c11SLawrence Mitchell - user    - The user callback
403c1f0c11SLawrence Mitchell - ctx     - context for callback evaluation
413c1f0c11SLawrence Mitchell 
423c1f0c11SLawrence Mitchell   Level: advanced
433c1f0c11SLawrence Mitchell 
44b0441da4SMatthew G. Knepley .seealso: DMSetAdjacency(), DMPlexDistribute(), DMPlexPreallocateOperator(), DMPlexGetAdjacency(), DMPlexSetAdjacencyUser()
453c1f0c11SLawrence Mitchell @*/
463c1f0c11SLawrence Mitchell PetscErrorCode DMPlexGetAdjacencyUser(DM dm, PetscErrorCode (**user)(DM,PetscInt,PetscInt*,PetscInt[],void*), void **ctx)
473c1f0c11SLawrence Mitchell {
483c1f0c11SLawrence Mitchell   DM_Plex *mesh = (DM_Plex *)dm->data;
493c1f0c11SLawrence Mitchell 
503c1f0c11SLawrence Mitchell   PetscFunctionBegin;
513c1f0c11SLawrence Mitchell   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
523c1f0c11SLawrence Mitchell   if (user) *user = mesh->useradjacency;
533c1f0c11SLawrence Mitchell   if (ctx) *ctx = mesh->useradjacencyctx;
543c1f0c11SLawrence Mitchell   PetscFunctionReturn(0);
553c1f0c11SLawrence Mitchell }
563c1f0c11SLawrence Mitchell 
5770034214SMatthew G. Knepley /*@
58a17985deSToby Isaac   DMPlexSetAdjacencyUseAnchors - Define adjacency in the mesh using the point-to-point constraints.
598b0b4c70SToby Isaac 
608b0b4c70SToby Isaac   Input Parameters:
618b0b4c70SToby Isaac + dm      - The DM object
625b317d89SToby Isaac - useAnchors - Flag to use the constraints.  If PETSC_TRUE, then constrained points are omitted from DMPlexGetAdjacency(), and their anchor points appear in their place.
638b0b4c70SToby Isaac 
648b0b4c70SToby Isaac   Level: intermediate
658b0b4c70SToby Isaac 
66b0441da4SMatthew G. Knepley .seealso: DMGetAdjacency(), DMSetAdjacency(), DMPlexDistribute(), DMPlexPreallocateOperator(), DMPlexSetAnchors()
678b0b4c70SToby Isaac @*/
685b317d89SToby Isaac PetscErrorCode DMPlexSetAdjacencyUseAnchors(DM dm, PetscBool useAnchors)
698b0b4c70SToby Isaac {
708b0b4c70SToby Isaac   DM_Plex *mesh = (DM_Plex *) dm->data;
718b0b4c70SToby Isaac 
728b0b4c70SToby Isaac   PetscFunctionBegin;
738b0b4c70SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
745b317d89SToby Isaac   mesh->useAnchors = useAnchors;
758b0b4c70SToby Isaac   PetscFunctionReturn(0);
768b0b4c70SToby Isaac }
778b0b4c70SToby Isaac 
788b0b4c70SToby Isaac /*@
79a17985deSToby Isaac   DMPlexGetAdjacencyUseAnchors - Query whether adjacency in the mesh uses the point-to-point constraints.
808b0b4c70SToby Isaac 
818b0b4c70SToby Isaac   Input Parameter:
828b0b4c70SToby Isaac . dm      - The DM object
838b0b4c70SToby Isaac 
848b0b4c70SToby Isaac   Output Parameter:
855b317d89SToby Isaac . useAnchors - Flag to use the closure.  If PETSC_TRUE, then constrained points are omitted from DMPlexGetAdjacency(), and their anchor points appear in their place.
868b0b4c70SToby Isaac 
878b0b4c70SToby Isaac   Level: intermediate
888b0b4c70SToby Isaac 
89b0441da4SMatthew G. Knepley .seealso: DMPlexSetAdjacencyUseAnchors(), DMSetAdjacency(), DMGetAdjacency(), DMPlexDistribute(), DMPlexPreallocateOperator(), DMPlexSetAnchors()
908b0b4c70SToby Isaac @*/
915b317d89SToby Isaac PetscErrorCode DMPlexGetAdjacencyUseAnchors(DM dm, PetscBool *useAnchors)
928b0b4c70SToby Isaac {
938b0b4c70SToby Isaac   DM_Plex *mesh = (DM_Plex *) dm->data;
948b0b4c70SToby Isaac 
958b0b4c70SToby Isaac   PetscFunctionBegin;
968b0b4c70SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
975b317d89SToby Isaac   PetscValidIntPointer(useAnchors, 2);
985b317d89SToby Isaac   *useAnchors = mesh->useAnchors;
998b0b4c70SToby Isaac   PetscFunctionReturn(0);
1008b0b4c70SToby Isaac }
1018b0b4c70SToby Isaac 
10270034214SMatthew G. Knepley static PetscErrorCode DMPlexGetAdjacency_Cone_Internal(DM dm, PetscInt p, PetscInt *adjSize, PetscInt adj[])
10370034214SMatthew G. Knepley {
10470034214SMatthew G. Knepley   const PetscInt *cone = NULL;
10570034214SMatthew G. Knepley   PetscInt        numAdj = 0, maxAdjSize = *adjSize, coneSize, c;
10670034214SMatthew G. Knepley   PetscErrorCode  ierr;
10770034214SMatthew G. Knepley 
10870034214SMatthew G. Knepley   PetscFunctionBeginHot;
10970034214SMatthew G. Knepley   ierr = DMPlexGetConeSize(dm, p, &coneSize);CHKERRQ(ierr);
11070034214SMatthew G. Knepley   ierr = DMPlexGetCone(dm, p, &cone);CHKERRQ(ierr);
1114b6b44bdSMatthew G. Knepley   for (c = 0; c <= coneSize; ++c) {
1124b6b44bdSMatthew G. Knepley     const PetscInt  point   = !c ? p : cone[c-1];
11370034214SMatthew G. Knepley     const PetscInt *support = NULL;
11470034214SMatthew G. Knepley     PetscInt        supportSize, s, q;
11570034214SMatthew G. Knepley 
1164b6b44bdSMatthew G. Knepley     ierr = DMPlexGetSupportSize(dm, point, &supportSize);CHKERRQ(ierr);
1174b6b44bdSMatthew G. Knepley     ierr = DMPlexGetSupport(dm, point, &support);CHKERRQ(ierr);
11870034214SMatthew G. Knepley     for (s = 0; s < supportSize; ++s) {
119527e7439SSatish Balay       for (q = 0; q < numAdj || ((void)(adj[numAdj++] = support[s]),0); ++q) {
12070034214SMatthew G. Knepley         if (support[s] == adj[q]) break;
12170034214SMatthew G. Knepley       }
12270034214SMatthew G. Knepley       if (numAdj > maxAdjSize) SETERRQ1(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid mesh exceeded adjacency allocation (%D)", maxAdjSize);
12370034214SMatthew G. Knepley     }
12470034214SMatthew G. Knepley   }
12570034214SMatthew G. Knepley   *adjSize = numAdj;
12670034214SMatthew G. Knepley   PetscFunctionReturn(0);
12770034214SMatthew G. Knepley }
12870034214SMatthew G. Knepley 
12970034214SMatthew G. Knepley static PetscErrorCode DMPlexGetAdjacency_Support_Internal(DM dm, PetscInt p, PetscInt *adjSize, PetscInt adj[])
13070034214SMatthew G. Knepley {
13170034214SMatthew G. Knepley   const PetscInt *support = NULL;
13270034214SMatthew G. Knepley   PetscInt        numAdj   = 0, maxAdjSize = *adjSize, supportSize, s;
13370034214SMatthew G. Knepley   PetscErrorCode  ierr;
13470034214SMatthew G. Knepley 
13570034214SMatthew G. Knepley   PetscFunctionBeginHot;
13670034214SMatthew G. Knepley   ierr = DMPlexGetSupportSize(dm, p, &supportSize);CHKERRQ(ierr);
13770034214SMatthew G. Knepley   ierr = DMPlexGetSupport(dm, p, &support);CHKERRQ(ierr);
1384b6b44bdSMatthew G. Knepley   for (s = 0; s <= supportSize; ++s) {
1394b6b44bdSMatthew G. Knepley     const PetscInt  point = !s ? p : support[s-1];
14070034214SMatthew G. Knepley     const PetscInt *cone  = NULL;
14170034214SMatthew G. Knepley     PetscInt        coneSize, c, q;
14270034214SMatthew G. Knepley 
1434b6b44bdSMatthew G. Knepley     ierr = DMPlexGetConeSize(dm, point, &coneSize);CHKERRQ(ierr);
1444b6b44bdSMatthew G. Knepley     ierr = DMPlexGetCone(dm, point, &cone);CHKERRQ(ierr);
14570034214SMatthew G. Knepley     for (c = 0; c < coneSize; ++c) {
146527e7439SSatish Balay       for (q = 0; q < numAdj || ((void)(adj[numAdj++] = cone[c]),0); ++q) {
14770034214SMatthew G. Knepley         if (cone[c] == adj[q]) break;
14870034214SMatthew G. Knepley       }
14970034214SMatthew G. Knepley       if (numAdj > maxAdjSize) SETERRQ1(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid mesh exceeded adjacency allocation (%D)", maxAdjSize);
15070034214SMatthew G. Knepley     }
15170034214SMatthew G. Knepley   }
15270034214SMatthew G. Knepley   *adjSize = numAdj;
15370034214SMatthew G. Knepley   PetscFunctionReturn(0);
15470034214SMatthew G. Knepley }
15570034214SMatthew G. Knepley 
15670034214SMatthew G. Knepley static PetscErrorCode DMPlexGetAdjacency_Transitive_Internal(DM dm, PetscInt p, PetscBool useClosure, PetscInt *adjSize, PetscInt adj[])
15770034214SMatthew G. Knepley {
15870034214SMatthew G. Knepley   PetscInt      *star = NULL;
15970034214SMatthew G. Knepley   PetscInt       numAdj = 0, maxAdjSize = *adjSize, starSize, s;
16070034214SMatthew G. Knepley   PetscErrorCode ierr;
16170034214SMatthew G. Knepley 
16270034214SMatthew G. Knepley   PetscFunctionBeginHot;
16370034214SMatthew G. Knepley   ierr = DMPlexGetTransitiveClosure(dm, p, useClosure, &starSize, &star);CHKERRQ(ierr);
16470034214SMatthew G. Knepley   for (s = 0; s < starSize*2; s += 2) {
16570034214SMatthew G. Knepley     const PetscInt *closure = NULL;
16670034214SMatthew G. Knepley     PetscInt        closureSize, c, q;
16770034214SMatthew G. Knepley 
16870034214SMatthew G. Knepley     ierr = DMPlexGetTransitiveClosure(dm, star[s], (PetscBool)!useClosure, &closureSize, (PetscInt**) &closure);CHKERRQ(ierr);
16970034214SMatthew G. Knepley     for (c = 0; c < closureSize*2; c += 2) {
170527e7439SSatish Balay       for (q = 0; q < numAdj || ((void)(adj[numAdj++] = closure[c]),0); ++q) {
17170034214SMatthew G. Knepley         if (closure[c] == adj[q]) break;
17270034214SMatthew G. Knepley       }
17370034214SMatthew G. Knepley       if (numAdj > maxAdjSize) SETERRQ1(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid mesh exceeded adjacency allocation (%D)", maxAdjSize);
17470034214SMatthew G. Knepley     }
17570034214SMatthew G. Knepley     ierr = DMPlexRestoreTransitiveClosure(dm, star[s], (PetscBool)!useClosure, &closureSize, (PetscInt**) &closure);CHKERRQ(ierr);
17670034214SMatthew G. Knepley   }
17770034214SMatthew G. Knepley   ierr = DMPlexRestoreTransitiveClosure(dm, p, useClosure, &starSize, &star);CHKERRQ(ierr);
17870034214SMatthew G. Knepley   *adjSize = numAdj;
17970034214SMatthew G. Knepley   PetscFunctionReturn(0);
18070034214SMatthew G. Knepley }
18170034214SMatthew G. Knepley 
1825b317d89SToby Isaac PetscErrorCode DMPlexGetAdjacency_Internal(DM dm, PetscInt p, PetscBool useCone, PetscBool useTransitiveClosure, PetscBool useAnchors, PetscInt *adjSize, PetscInt *adj[])
18370034214SMatthew G. Knepley {
18479bad331SMatthew G. Knepley   static PetscInt asiz = 0;
1858b0b4c70SToby Isaac   PetscInt maxAnchors = 1;
1868b0b4c70SToby Isaac   PetscInt aStart = -1, aEnd = -1;
1878b0b4c70SToby Isaac   PetscInt maxAdjSize;
1888b0b4c70SToby Isaac   PetscSection aSec = NULL;
1898b0b4c70SToby Isaac   IS aIS = NULL;
1908b0b4c70SToby Isaac   const PetscInt *anchors;
1913c1f0c11SLawrence Mitchell   DM_Plex *mesh = (DM_Plex *)dm->data;
19270034214SMatthew G. Knepley   PetscErrorCode  ierr;
19370034214SMatthew G. Knepley 
19470034214SMatthew G. Knepley   PetscFunctionBeginHot;
1955b317d89SToby Isaac   if (useAnchors) {
196a17985deSToby Isaac     ierr = DMPlexGetAnchors(dm,&aSec,&aIS);CHKERRQ(ierr);
1978b0b4c70SToby Isaac     if (aSec) {
1988b0b4c70SToby Isaac       ierr = PetscSectionGetMaxDof(aSec,&maxAnchors);CHKERRQ(ierr);
19924c766afSToby Isaac       maxAnchors = PetscMax(1,maxAnchors);
2008b0b4c70SToby Isaac       ierr = PetscSectionGetChart(aSec,&aStart,&aEnd);CHKERRQ(ierr);
2018b0b4c70SToby Isaac       ierr = ISGetIndices(aIS,&anchors);CHKERRQ(ierr);
2028b0b4c70SToby Isaac     }
2038b0b4c70SToby Isaac   }
20479bad331SMatthew G. Knepley   if (!*adj) {
20524c766afSToby Isaac     PetscInt depth, coneSeries, supportSeries, maxC, maxS, pStart, pEnd;
20679bad331SMatthew G. Knepley 
20724c766afSToby Isaac     ierr  = DMPlexGetChart(dm, &pStart,&pEnd);CHKERRQ(ierr);
20879bad331SMatthew G. Knepley     ierr  = DMPlexGetDepth(dm, &depth);CHKERRQ(ierr);
209412e9a14SMatthew G. Knepley     depth = PetscMax(depth, -depth);
21024c766afSToby Isaac     ierr  = DMPlexGetMaxSizes(dm, &maxC, &maxS);CHKERRQ(ierr);
21124c766afSToby Isaac     coneSeries    = (maxC > 1) ? ((PetscPowInt(maxC,depth+1)-1)/(maxC-1)) : depth+1;
21224c766afSToby Isaac     supportSeries = (maxS > 1) ? ((PetscPowInt(maxS,depth+1)-1)/(maxS-1)) : depth+1;
21324c766afSToby Isaac     asiz  = PetscMax(PetscPowInt(maxS,depth)*coneSeries,PetscPowInt(maxC,depth)*supportSeries);
2148b0b4c70SToby Isaac     asiz *= maxAnchors;
21524c766afSToby Isaac     asiz  = PetscMin(asiz,pEnd-pStart);
21679bad331SMatthew G. Knepley     ierr  = PetscMalloc1(asiz,adj);CHKERRQ(ierr);
21779bad331SMatthew G. Knepley   }
21879bad331SMatthew G. Knepley   if (*adjSize < 0) *adjSize = asiz;
2198b0b4c70SToby Isaac   maxAdjSize = *adjSize;
2203c1f0c11SLawrence Mitchell   if (mesh->useradjacency) {
22162f17a49SStefano Zampini     ierr = (*mesh->useradjacency)(dm, p, adjSize, *adj, mesh->useradjacencyctx);CHKERRQ(ierr);
2223c1f0c11SLawrence Mitchell   } else if (useTransitiveClosure) {
22379bad331SMatthew G. Knepley     ierr = DMPlexGetAdjacency_Transitive_Internal(dm, p, useCone, adjSize, *adj);CHKERRQ(ierr);
22470034214SMatthew G. Knepley   } else if (useCone) {
22579bad331SMatthew G. Knepley     ierr = DMPlexGetAdjacency_Cone_Internal(dm, p, adjSize, *adj);CHKERRQ(ierr);
22670034214SMatthew G. Knepley   } else {
22779bad331SMatthew G. Knepley     ierr = DMPlexGetAdjacency_Support_Internal(dm, p, adjSize, *adj);CHKERRQ(ierr);
22870034214SMatthew G. Knepley   }
2295b317d89SToby Isaac   if (useAnchors && aSec) {
2308b0b4c70SToby Isaac     PetscInt origSize = *adjSize;
2318b0b4c70SToby Isaac     PetscInt numAdj = origSize;
2328b0b4c70SToby Isaac     PetscInt i = 0, j;
2338b0b4c70SToby Isaac     PetscInt *orig = *adj;
2348b0b4c70SToby Isaac 
2358b0b4c70SToby Isaac     while (i < origSize) {
2368b0b4c70SToby Isaac       PetscInt p = orig[i];
2378b0b4c70SToby Isaac       PetscInt aDof = 0;
2388b0b4c70SToby Isaac 
2398b0b4c70SToby Isaac       if (p >= aStart && p < aEnd) {
2408b0b4c70SToby Isaac         ierr = PetscSectionGetDof(aSec,p,&aDof);CHKERRQ(ierr);
2418b0b4c70SToby Isaac       }
2428b0b4c70SToby Isaac       if (aDof) {
2438b0b4c70SToby Isaac         PetscInt aOff;
2448b0b4c70SToby Isaac         PetscInt s, q;
2458b0b4c70SToby Isaac 
2468b0b4c70SToby Isaac         for (j = i + 1; j < numAdj; j++) {
2478b0b4c70SToby Isaac           orig[j - 1] = orig[j];
2488b0b4c70SToby Isaac         }
2498b0b4c70SToby Isaac         origSize--;
2508b0b4c70SToby Isaac         numAdj--;
2518b0b4c70SToby Isaac         ierr = PetscSectionGetOffset(aSec,p,&aOff);CHKERRQ(ierr);
2528b0b4c70SToby Isaac         for (s = 0; s < aDof; ++s) {
253527e7439SSatish Balay           for (q = 0; q < numAdj || ((void)(orig[numAdj++] = anchors[aOff+s]),0); ++q) {
2548b0b4c70SToby Isaac             if (anchors[aOff+s] == orig[q]) break;
2558b0b4c70SToby Isaac           }
2568b0b4c70SToby Isaac           if (numAdj > maxAdjSize) SETERRQ1(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid mesh exceeded adjacency allocation (%D)", maxAdjSize);
2578b0b4c70SToby Isaac         }
2588b0b4c70SToby Isaac       }
2598b0b4c70SToby Isaac       else {
2608b0b4c70SToby Isaac         i++;
2618b0b4c70SToby Isaac       }
2628b0b4c70SToby Isaac     }
2638b0b4c70SToby Isaac     *adjSize = numAdj;
2648b0b4c70SToby Isaac     ierr = ISRestoreIndices(aIS,&anchors);CHKERRQ(ierr);
2658b0b4c70SToby Isaac   }
26670034214SMatthew G. Knepley   PetscFunctionReturn(0);
26770034214SMatthew G. Knepley }
26870034214SMatthew G. Knepley 
26970034214SMatthew G. Knepley /*@
27070034214SMatthew G. Knepley   DMPlexGetAdjacency - Return all points adjacent to the given point
27170034214SMatthew G. Knepley 
27270034214SMatthew G. Knepley   Input Parameters:
27370034214SMatthew G. Knepley + dm - The DM object
27470034214SMatthew G. Knepley . p  - The point
27570034214SMatthew G. Knepley . adjSize - The maximum size of adj if it is non-NULL, or PETSC_DETERMINE
27670034214SMatthew G. Knepley - adj - Either NULL so that the array is allocated, or an existing array with size adjSize
27770034214SMatthew G. Knepley 
27870034214SMatthew G. Knepley   Output Parameters:
27970034214SMatthew G. Knepley + adjSize - The number of adjacent points
28070034214SMatthew G. Knepley - adj - The adjacent points
28170034214SMatthew G. Knepley 
28270034214SMatthew G. Knepley   Level: advanced
28370034214SMatthew G. Knepley 
28495452b02SPatrick Sanan   Notes:
28595452b02SPatrick Sanan     The user must PetscFree the adj array if it was not passed in.
28670034214SMatthew G. Knepley 
287b0441da4SMatthew G. Knepley .seealso: DMSetAdjacency(), DMPlexDistribute(), DMCreateMatrix(), DMPlexPreallocateOperator()
28870034214SMatthew G. Knepley @*/
28970034214SMatthew G. Knepley PetscErrorCode DMPlexGetAdjacency(DM dm, PetscInt p, PetscInt *adjSize, PetscInt *adj[])
29070034214SMatthew G. Knepley {
2911cf84007SMatthew G. Knepley   PetscBool      useCone, useClosure, useAnchors;
29270034214SMatthew G. Knepley   PetscErrorCode ierr;
29370034214SMatthew G. Knepley 
29470034214SMatthew G. Knepley   PetscFunctionBeginHot;
29570034214SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
29670034214SMatthew G. Knepley   PetscValidPointer(adjSize,3);
29770034214SMatthew G. Knepley   PetscValidPointer(adj,4);
298b0441da4SMatthew G. Knepley   ierr = DMGetBasicAdjacency(dm, &useCone, &useClosure);CHKERRQ(ierr);
2991cf84007SMatthew G. Knepley   ierr = DMPlexGetAdjacencyUseAnchors(dm, &useAnchors);CHKERRQ(ierr);
3001cf84007SMatthew G. Knepley   ierr = DMPlexGetAdjacency_Internal(dm, p, useCone, useClosure, useAnchors, adjSize, adj);CHKERRQ(ierr);
30170034214SMatthew G. Knepley   PetscFunctionReturn(0);
30270034214SMatthew G. Knepley }
30308633170SToby Isaac 
304b0a623aaSMatthew G. Knepley /*@
305b0a623aaSMatthew G. Knepley   DMPlexCreateTwoSidedProcessSF - Create an SF which just has process connectivity
306b0a623aaSMatthew G. Knepley 
307d083f849SBarry Smith   Collective on dm
308b0a623aaSMatthew G. Knepley 
309b0a623aaSMatthew G. Knepley   Input Parameters:
310b0a623aaSMatthew G. Knepley + dm      - The DM
311b0a623aaSMatthew G. Knepley - sfPoint - The PetscSF which encodes point connectivity
312b0a623aaSMatthew G. Knepley 
313b0a623aaSMatthew G. Knepley   Output Parameters:
314b0a623aaSMatthew G. Knepley + processRanks - A list of process neighbors, or NULL
315b0a623aaSMatthew G. Knepley - sfProcess    - An SF encoding the two-sided process connectivity, or NULL
316b0a623aaSMatthew G. Knepley 
317b0a623aaSMatthew G. Knepley   Level: developer
318b0a623aaSMatthew G. Knepley 
319b0a623aaSMatthew G. Knepley .seealso: PetscSFCreate(), DMPlexCreateProcessSF()
320b0a623aaSMatthew G. Knepley @*/
321b0a623aaSMatthew G. Knepley PetscErrorCode DMPlexCreateTwoSidedProcessSF(DM dm, PetscSF sfPoint, PetscSection rootRankSection, IS rootRanks, PetscSection leafRankSection, IS leafRanks, IS *processRanks, PetscSF *sfProcess)
322b0a623aaSMatthew G. Knepley {
323b0a623aaSMatthew G. Knepley   const PetscSFNode *remotePoints;
324b0a623aaSMatthew G. Knepley   PetscInt          *localPointsNew;
325b0a623aaSMatthew G. Knepley   PetscSFNode       *remotePointsNew;
326b0a623aaSMatthew G. Knepley   const PetscInt    *nranks;
327b0a623aaSMatthew G. Knepley   PetscInt          *ranksNew;
328b0a623aaSMatthew G. Knepley   PetscBT            neighbors;
329b0a623aaSMatthew G. Knepley   PetscInt           pStart, pEnd, p, numLeaves, l, numNeighbors, n;
3309852e123SBarry Smith   PetscMPIInt        size, proc, rank;
331b0a623aaSMatthew G. Knepley   PetscErrorCode     ierr;
332b0a623aaSMatthew G. Knepley 
333b0a623aaSMatthew G. Knepley   PetscFunctionBegin;
334b0a623aaSMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
335b0a623aaSMatthew G. Knepley   PetscValidHeaderSpecific(sfPoint, PETSCSF_CLASSID, 2);
336b0a623aaSMatthew G. Knepley   if (processRanks) {PetscValidPointer(processRanks, 3);}
337b0a623aaSMatthew G. Knepley   if (sfProcess)    {PetscValidPointer(sfProcess, 4);}
338ffc4695bSBarry Smith   ierr = MPI_Comm_size(PetscObjectComm((PetscObject) dm), &size);CHKERRMPI(ierr);
339ffc4695bSBarry Smith   ierr = MPI_Comm_rank(PetscObjectComm((PetscObject) dm), &rank);CHKERRMPI(ierr);
340b0a623aaSMatthew G. Knepley   ierr = PetscSFGetGraph(sfPoint, NULL, &numLeaves, NULL, &remotePoints);CHKERRQ(ierr);
3419852e123SBarry Smith   ierr = PetscBTCreate(size, &neighbors);CHKERRQ(ierr);
3429852e123SBarry Smith   ierr = PetscBTMemzero(size, neighbors);CHKERRQ(ierr);
343b0a623aaSMatthew G. Knepley   /* Compute root-to-leaf process connectivity */
344b0a623aaSMatthew G. Knepley   ierr = PetscSectionGetChart(rootRankSection, &pStart, &pEnd);CHKERRQ(ierr);
345b0a623aaSMatthew G. Knepley   ierr = ISGetIndices(rootRanks, &nranks);CHKERRQ(ierr);
346b0a623aaSMatthew G. Knepley   for (p = pStart; p < pEnd; ++p) {
347b0a623aaSMatthew G. Knepley     PetscInt ndof, noff, n;
348b0a623aaSMatthew G. Knepley 
349b0a623aaSMatthew G. Knepley     ierr = PetscSectionGetDof(rootRankSection, p, &ndof);CHKERRQ(ierr);
350b0a623aaSMatthew G. Knepley     ierr = PetscSectionGetOffset(rootRankSection, p, &noff);CHKERRQ(ierr);
351302440fdSBarry Smith     for (n = 0; n < ndof; ++n) {ierr = PetscBTSet(neighbors, nranks[noff+n]);CHKERRQ(ierr);}
352b0a623aaSMatthew G. Knepley   }
353b0a623aaSMatthew G. Knepley   ierr = ISRestoreIndices(rootRanks, &nranks);CHKERRQ(ierr);
354b0a623aaSMatthew G. Knepley   /* Compute leaf-to-neighbor process connectivity */
355b0a623aaSMatthew G. Knepley   ierr = PetscSectionGetChart(leafRankSection, &pStart, &pEnd);CHKERRQ(ierr);
356b0a623aaSMatthew G. Knepley   ierr = ISGetIndices(leafRanks, &nranks);CHKERRQ(ierr);
357b0a623aaSMatthew G. Knepley   for (p = pStart; p < pEnd; ++p) {
358b0a623aaSMatthew G. Knepley     PetscInt ndof, noff, n;
359b0a623aaSMatthew G. Knepley 
360b0a623aaSMatthew G. Knepley     ierr = PetscSectionGetDof(leafRankSection, p, &ndof);CHKERRQ(ierr);
361b0a623aaSMatthew G. Knepley     ierr = PetscSectionGetOffset(leafRankSection, p, &noff);CHKERRQ(ierr);
362302440fdSBarry Smith     for (n = 0; n < ndof; ++n) {ierr = PetscBTSet(neighbors, nranks[noff+n]);CHKERRQ(ierr);}
363b0a623aaSMatthew G. Knepley   }
364b0a623aaSMatthew G. Knepley   ierr = ISRestoreIndices(leafRanks, &nranks);CHKERRQ(ierr);
365b0a623aaSMatthew G. Knepley   /* Compute leaf-to-root process connectivity */
366b0a623aaSMatthew G. Knepley   for (l = 0; l < numLeaves; ++l) {PetscBTSet(neighbors, remotePoints[l].rank);}
367b0a623aaSMatthew G. Knepley   /* Calculate edges */
368b0a623aaSMatthew G. Knepley   PetscBTClear(neighbors, rank);
3699852e123SBarry Smith   for (proc = 0, numNeighbors = 0; proc < size; ++proc) {if (PetscBTLookup(neighbors, proc)) ++numNeighbors;}
370b0a623aaSMatthew G. Knepley   ierr = PetscMalloc1(numNeighbors, &ranksNew);CHKERRQ(ierr);
371b0a623aaSMatthew G. Knepley   ierr = PetscMalloc1(numNeighbors, &localPointsNew);CHKERRQ(ierr);
372b0a623aaSMatthew G. Knepley   ierr = PetscMalloc1(numNeighbors, &remotePointsNew);CHKERRQ(ierr);
3739852e123SBarry Smith   for (proc = 0, n = 0; proc < size; ++proc) {
374b0a623aaSMatthew G. Knepley     if (PetscBTLookup(neighbors, proc)) {
375b0a623aaSMatthew G. Knepley       ranksNew[n]              = proc;
376b0a623aaSMatthew G. Knepley       localPointsNew[n]        = proc;
377b0a623aaSMatthew G. Knepley       remotePointsNew[n].index = rank;
378b0a623aaSMatthew G. Knepley       remotePointsNew[n].rank  = proc;
379b0a623aaSMatthew G. Knepley       ++n;
380b0a623aaSMatthew G. Knepley     }
381b0a623aaSMatthew G. Knepley   }
382b0a623aaSMatthew G. Knepley   ierr = PetscBTDestroy(&neighbors);CHKERRQ(ierr);
383b0a623aaSMatthew G. Knepley   if (processRanks) {ierr = ISCreateGeneral(PetscObjectComm((PetscObject)dm), numNeighbors, ranksNew, PETSC_OWN_POINTER, processRanks);CHKERRQ(ierr);}
384b0a623aaSMatthew G. Knepley   else              {ierr = PetscFree(ranksNew);CHKERRQ(ierr);}
385b0a623aaSMatthew G. Knepley   if (sfProcess) {
386b0a623aaSMatthew G. Knepley     ierr = PetscSFCreate(PetscObjectComm((PetscObject)dm), sfProcess);CHKERRQ(ierr);
387b0a623aaSMatthew G. Knepley     ierr = PetscObjectSetName((PetscObject) *sfProcess, "Two-Sided Process SF");CHKERRQ(ierr);
388b0a623aaSMatthew G. Knepley     ierr = PetscSFSetFromOptions(*sfProcess);CHKERRQ(ierr);
3899852e123SBarry Smith     ierr = PetscSFSetGraph(*sfProcess, size, numNeighbors, localPointsNew, PETSC_OWN_POINTER, remotePointsNew, PETSC_OWN_POINTER);CHKERRQ(ierr);
390b0a623aaSMatthew G. Knepley   }
391b0a623aaSMatthew G. Knepley   PetscFunctionReturn(0);
392b0a623aaSMatthew G. Knepley }
393b0a623aaSMatthew G. Knepley 
394b0a623aaSMatthew G. Knepley /*@
395b0a623aaSMatthew G. Knepley   DMPlexDistributeOwnership - Compute owner information for shared points. This basically gets two-sided for an SF.
396b0a623aaSMatthew G. Knepley 
397d083f849SBarry Smith   Collective on dm
398b0a623aaSMatthew G. Knepley 
399b0a623aaSMatthew G. Knepley   Input Parameter:
400b0a623aaSMatthew G. Knepley . dm - The DM
401b0a623aaSMatthew G. Knepley 
402b0a623aaSMatthew G. Knepley   Output Parameters:
403b0a623aaSMatthew G. Knepley + rootSection - The number of leaves for a given root point
404b0a623aaSMatthew G. Knepley . rootrank    - The rank of each edge into the root point
405b0a623aaSMatthew G. Knepley . leafSection - The number of processes sharing a given leaf point
406b0a623aaSMatthew G. Knepley - leafrank    - The rank of each process sharing a leaf point
407b0a623aaSMatthew G. Knepley 
408b0a623aaSMatthew G. Knepley   Level: developer
409b0a623aaSMatthew G. Knepley 
410dccdeccaSVaclav Hapla .seealso: DMPlexCreateOverlapLabel(), DMPlexDistribute(), DMPlexDistributeOverlap()
411b0a623aaSMatthew G. Knepley @*/
412b0a623aaSMatthew G. Knepley PetscErrorCode DMPlexDistributeOwnership(DM dm, PetscSection rootSection, IS *rootrank, PetscSection leafSection, IS *leafrank)
413b0a623aaSMatthew G. Knepley {
414b0a623aaSMatthew G. Knepley   MPI_Comm        comm;
415b0a623aaSMatthew G. Knepley   PetscSF         sfPoint;
416b0a623aaSMatthew G. Knepley   const PetscInt *rootdegree;
417b0a623aaSMatthew G. Knepley   PetscInt       *myrank, *remoterank;
418b0a623aaSMatthew G. Knepley   PetscInt        pStart, pEnd, p, nedges;
419b0a623aaSMatthew G. Knepley   PetscMPIInt     rank;
420b0a623aaSMatthew G. Knepley   PetscErrorCode  ierr;
421b0a623aaSMatthew G. Knepley 
422b0a623aaSMatthew G. Knepley   PetscFunctionBegin;
423b0a623aaSMatthew G. Knepley   ierr = PetscObjectGetComm((PetscObject) dm, &comm);CHKERRQ(ierr);
424ffc4695bSBarry Smith   ierr = MPI_Comm_rank(comm, &rank);CHKERRMPI(ierr);
425b0a623aaSMatthew G. Knepley   ierr = DMPlexGetChart(dm, &pStart, &pEnd);CHKERRQ(ierr);
426b0a623aaSMatthew G. Knepley   ierr = DMGetPointSF(dm, &sfPoint);CHKERRQ(ierr);
427b0a623aaSMatthew G. Knepley   /* Compute number of leaves for each root */
428b0a623aaSMatthew G. Knepley   ierr = PetscObjectSetName((PetscObject) rootSection, "Root Section");CHKERRQ(ierr);
429b0a623aaSMatthew G. Knepley   ierr = PetscSectionSetChart(rootSection, pStart, pEnd);CHKERRQ(ierr);
430b0a623aaSMatthew G. Knepley   ierr = PetscSFComputeDegreeBegin(sfPoint, &rootdegree);CHKERRQ(ierr);
431b0a623aaSMatthew G. Knepley   ierr = PetscSFComputeDegreeEnd(sfPoint, &rootdegree);CHKERRQ(ierr);
432b0a623aaSMatthew G. Knepley   for (p = pStart; p < pEnd; ++p) {ierr = PetscSectionSetDof(rootSection, p, rootdegree[p-pStart]);CHKERRQ(ierr);}
433b0a623aaSMatthew G. Knepley   ierr = PetscSectionSetUp(rootSection);CHKERRQ(ierr);
434b0a623aaSMatthew G. Knepley   /* Gather rank of each leaf to root */
435b0a623aaSMatthew G. Knepley   ierr = PetscSectionGetStorageSize(rootSection, &nedges);CHKERRQ(ierr);
436b0a623aaSMatthew G. Knepley   ierr = PetscMalloc1(pEnd-pStart, &myrank);CHKERRQ(ierr);
437b0a623aaSMatthew G. Knepley   ierr = PetscMalloc1(nedges,  &remoterank);CHKERRQ(ierr);
438b0a623aaSMatthew G. Knepley   for (p = 0; p < pEnd-pStart; ++p) myrank[p] = rank;
439b0a623aaSMatthew G. Knepley   ierr = PetscSFGatherBegin(sfPoint, MPIU_INT, myrank, remoterank);CHKERRQ(ierr);
440b0a623aaSMatthew G. Knepley   ierr = PetscSFGatherEnd(sfPoint, MPIU_INT, myrank, remoterank);CHKERRQ(ierr);
441b0a623aaSMatthew G. Knepley   ierr = PetscFree(myrank);CHKERRQ(ierr);
442b0a623aaSMatthew G. Knepley   ierr = ISCreateGeneral(comm, nedges, remoterank, PETSC_OWN_POINTER, rootrank);CHKERRQ(ierr);
443b0a623aaSMatthew G. Knepley   /* Distribute remote ranks to leaves */
444b0a623aaSMatthew G. Knepley   ierr = PetscObjectSetName((PetscObject) leafSection, "Leaf Section");CHKERRQ(ierr);
445b0a623aaSMatthew G. Knepley   ierr = DMPlexDistributeFieldIS(dm, sfPoint, rootSection, *rootrank, leafSection, leafrank);CHKERRQ(ierr);
446b0a623aaSMatthew G. Knepley   PetscFunctionReturn(0);
447b0a623aaSMatthew G. Knepley }
448b0a623aaSMatthew G. Knepley 
449278397a0SMatthew G. Knepley /*@C
450dccdeccaSVaclav Hapla   DMPlexCreateOverlapLabel - Compute owner information for shared points. This basically gets two-sided for an SF.
451b0a623aaSMatthew G. Knepley 
452d083f849SBarry Smith   Collective on dm
453b0a623aaSMatthew G. Knepley 
454b0a623aaSMatthew G. Knepley   Input Parameters:
455b0a623aaSMatthew G. Knepley + dm          - The DM
45624d039d7SMichael Lange . levels      - Number of overlap levels
457b0a623aaSMatthew G. Knepley . rootSection - The number of leaves for a given root point
458b0a623aaSMatthew G. Knepley . rootrank    - The rank of each edge into the root point
459b0a623aaSMatthew G. Knepley . leafSection - The number of processes sharing a given leaf point
460b0a623aaSMatthew G. Knepley - leafrank    - The rank of each process sharing a leaf point
461b0a623aaSMatthew G. Knepley 
462064ec1f3Sprj-   Output Parameter:
463b4ec6ac8SBarry Smith . ovLabel     - DMLabel containing remote overlap contributions as point/rank pairings
464b0a623aaSMatthew G. Knepley 
465b0a623aaSMatthew G. Knepley   Level: developer
466b0a623aaSMatthew G. Knepley 
4671fd9873aSMichael Lange .seealso: DMPlexDistributeOwnership(), DMPlexDistribute()
468b0a623aaSMatthew G. Knepley @*/
469dccdeccaSVaclav Hapla PetscErrorCode DMPlexCreateOverlapLabel(DM dm, PetscInt levels, PetscSection rootSection, IS rootrank, PetscSection leafSection, IS leafrank, DMLabel *ovLabel)
470b0a623aaSMatthew G. Knepley {
471e540f424SMichael Lange   MPI_Comm           comm;
472b0a623aaSMatthew G. Knepley   DMLabel            ovAdjByRank; /* A DMLabel containing all points adjacent to shared points, separated by rank (value in label) */
473874ddda9SLisandro Dalcin   PetscSF            sfPoint;
474b0a623aaSMatthew G. Knepley   const PetscSFNode *remote;
475b0a623aaSMatthew G. Knepley   const PetscInt    *local;
4761fd9873aSMichael Lange   const PetscInt    *nrank, *rrank;
477b0a623aaSMatthew G. Knepley   PetscInt          *adj = NULL;
4781fd9873aSMichael Lange   PetscInt           pStart, pEnd, p, sStart, sEnd, nleaves, l;
4799852e123SBarry Smith   PetscMPIInt        rank, size;
48031bc6364SLisandro Dalcin   PetscBool          flg;
481b0a623aaSMatthew G. Knepley   PetscErrorCode     ierr;
482b0a623aaSMatthew G. Knepley 
483b0a623aaSMatthew G. Knepley   PetscFunctionBegin;
4846ba1a4c7SVaclav Hapla   *ovLabel = NULL;
485e540f424SMichael Lange   ierr = PetscObjectGetComm((PetscObject) dm, &comm);CHKERRQ(ierr);
486ffc4695bSBarry Smith   ierr = MPI_Comm_size(comm, &size);CHKERRMPI(ierr);
487ffc4695bSBarry Smith   ierr = MPI_Comm_rank(comm, &rank);CHKERRMPI(ierr);
4886ba1a4c7SVaclav Hapla   if (size == 1) PetscFunctionReturn(0);
489b0a623aaSMatthew G. Knepley   ierr = DMGetPointSF(dm, &sfPoint);CHKERRQ(ierr);
490b0a623aaSMatthew G. Knepley   ierr = DMPlexGetChart(dm, &pStart, &pEnd);CHKERRQ(ierr);
491*d1674c6dSMatthew Knepley   if (!levels) {
492*d1674c6dSMatthew Knepley     /* Add owned points */
493*d1674c6dSMatthew Knepley     ierr = DMLabelCreate(PETSC_COMM_SELF, "Overlap label", ovLabel);CHKERRQ(ierr);
494*d1674c6dSMatthew Knepley     for (p = pStart; p < pEnd; ++p) {ierr = DMLabelSetValue(*ovLabel, p, rank);CHKERRQ(ierr);}
495*d1674c6dSMatthew Knepley     PetscFunctionReturn(0);
496*d1674c6dSMatthew Knepley   }
497b0a623aaSMatthew G. Knepley   ierr = PetscSectionGetChart(leafSection, &sStart, &sEnd);CHKERRQ(ierr);
498b0a623aaSMatthew G. Knepley   ierr = PetscSFGetGraph(sfPoint, NULL, &nleaves, &local, &remote);CHKERRQ(ierr);
499d67d17b1SMatthew G. Knepley   ierr = DMLabelCreate(PETSC_COMM_SELF, "Overlap adjacency", &ovAdjByRank);CHKERRQ(ierr);
500b0a623aaSMatthew G. Knepley   /* Handle leaves: shared with the root point */
501b0a623aaSMatthew G. Knepley   for (l = 0; l < nleaves; ++l) {
502b0a623aaSMatthew G. Knepley     PetscInt adjSize = PETSC_DETERMINE, a;
503b0a623aaSMatthew G. Knepley 
504df20756eSMatthew G. Knepley     ierr = DMPlexGetAdjacency(dm, local ? local[l] : l, &adjSize, &adj);CHKERRQ(ierr);
505b0a623aaSMatthew G. Knepley     for (a = 0; a < adjSize; ++a) {ierr = DMLabelSetValue(ovAdjByRank, adj[a], remote[l].rank);CHKERRQ(ierr);}
506b0a623aaSMatthew G. Knepley   }
507b0a623aaSMatthew G. Knepley   ierr = ISGetIndices(rootrank, &rrank);CHKERRQ(ierr);
508b0a623aaSMatthew G. Knepley   ierr = ISGetIndices(leafrank, &nrank);CHKERRQ(ierr);
509b0a623aaSMatthew G. Knepley   /* Handle roots */
510b0a623aaSMatthew G. Knepley   for (p = pStart; p < pEnd; ++p) {
511b0a623aaSMatthew G. Knepley     PetscInt adjSize = PETSC_DETERMINE, neighbors = 0, noff, n, a;
512b0a623aaSMatthew G. Knepley 
513b0a623aaSMatthew G. Knepley     if ((p >= sStart) && (p < sEnd)) {
514b0a623aaSMatthew G. Knepley       /* Some leaves share a root with other leaves on different processes */
515b0a623aaSMatthew G. Knepley       ierr = PetscSectionGetDof(leafSection, p, &neighbors);CHKERRQ(ierr);
516b0a623aaSMatthew G. Knepley       if (neighbors) {
517b0a623aaSMatthew G. Knepley         ierr = PetscSectionGetOffset(leafSection, p, &noff);CHKERRQ(ierr);
518b0a623aaSMatthew G. Knepley         ierr = DMPlexGetAdjacency(dm, p, &adjSize, &adj);CHKERRQ(ierr);
519b0a623aaSMatthew G. Knepley         for (n = 0; n < neighbors; ++n) {
520b0a623aaSMatthew G. Knepley           const PetscInt remoteRank = nrank[noff+n];
521b0a623aaSMatthew G. Knepley 
522b0a623aaSMatthew G. Knepley           if (remoteRank == rank) continue;
523b0a623aaSMatthew G. Knepley           for (a = 0; a < adjSize; ++a) {ierr = DMLabelSetValue(ovAdjByRank, adj[a], remoteRank);CHKERRQ(ierr);}
524b0a623aaSMatthew G. Knepley         }
525b0a623aaSMatthew G. Knepley       }
526b0a623aaSMatthew G. Knepley     }
527b0a623aaSMatthew G. Knepley     /* Roots are shared with leaves */
528b0a623aaSMatthew G. Knepley     ierr = PetscSectionGetDof(rootSection, p, &neighbors);CHKERRQ(ierr);
529b0a623aaSMatthew G. Knepley     if (!neighbors) continue;
530b0a623aaSMatthew G. Knepley     ierr = PetscSectionGetOffset(rootSection, p, &noff);CHKERRQ(ierr);
531b0a623aaSMatthew G. Knepley     ierr = DMPlexGetAdjacency(dm, p, &adjSize, &adj);CHKERRQ(ierr);
532b0a623aaSMatthew G. Knepley     for (n = 0; n < neighbors; ++n) {
533b0a623aaSMatthew G. Knepley       const PetscInt remoteRank = rrank[noff+n];
534b0a623aaSMatthew G. Knepley 
535b0a623aaSMatthew G. Knepley       if (remoteRank == rank) continue;
536b0a623aaSMatthew G. Knepley       for (a = 0; a < adjSize; ++a) {ierr = DMLabelSetValue(ovAdjByRank, adj[a], remoteRank);CHKERRQ(ierr);}
537b0a623aaSMatthew G. Knepley     }
538b0a623aaSMatthew G. Knepley   }
539b0a623aaSMatthew G. Knepley   ierr = PetscFree(adj);CHKERRQ(ierr);
540b0a623aaSMatthew G. Knepley   ierr = ISRestoreIndices(rootrank, &rrank);CHKERRQ(ierr);
541b0a623aaSMatthew G. Knepley   ierr = ISRestoreIndices(leafrank, &nrank);CHKERRQ(ierr);
54224d039d7SMichael Lange   /* Add additional overlap levels */
543be200f8dSMichael Lange   for (l = 1; l < levels; l++) {
544be200f8dSMichael Lange     /* Propagate point donations over SF to capture remote connections */
545be200f8dSMichael Lange     ierr = DMPlexPartitionLabelPropagate(dm, ovAdjByRank);CHKERRQ(ierr);
546be200f8dSMichael Lange     /* Add next level of point donations to the label */
547be200f8dSMichael Lange     ierr = DMPlexPartitionLabelAdjacency(dm, ovAdjByRank);CHKERRQ(ierr);
548be200f8dSMichael Lange   }
54926a7d390SMatthew G. Knepley   /* We require the closure in the overlap */
5505abbe4feSMichael Lange   ierr = DMPlexPartitionLabelClosure(dm, ovAdjByRank);CHKERRQ(ierr);
551c5929fdfSBarry Smith   ierr = PetscOptionsHasName(((PetscObject) dm)->options,((PetscObject) dm)->prefix, "-overlap_view", &flg);CHKERRQ(ierr);
552e540f424SMichael Lange   if (flg) {
553825f8a23SLisandro Dalcin     PetscViewer viewer;
554825f8a23SLisandro Dalcin     ierr = PetscViewerASCIIGetStdout(PetscObjectComm((PetscObject)dm), &viewer);CHKERRQ(ierr);
555825f8a23SLisandro Dalcin     ierr = DMLabelView(ovAdjByRank, viewer);CHKERRQ(ierr);
556b0a623aaSMatthew G. Knepley   }
557874ddda9SLisandro Dalcin   /* Invert sender to receiver label */
558d67d17b1SMatthew G. Knepley   ierr = DMLabelCreate(PETSC_COMM_SELF, "Overlap label", ovLabel);CHKERRQ(ierr);
559874ddda9SLisandro Dalcin   ierr = DMPlexPartitionLabelInvert(dm, ovAdjByRank, NULL, *ovLabel);CHKERRQ(ierr);
560a9f1d5b2SMichael Lange   /* Add owned points, except for shared local points */
561a9f1d5b2SMichael Lange   for (p = pStart; p < pEnd; ++p) {ierr = DMLabelSetValue(*ovLabel, p, rank);CHKERRQ(ierr);}
562e540f424SMichael Lange   for (l = 0; l < nleaves; ++l) {
563a9f1d5b2SMichael Lange     ierr = DMLabelClearValue(*ovLabel, local[l], rank);CHKERRQ(ierr);
564a9f1d5b2SMichael Lange     ierr = DMLabelSetValue(*ovLabel, remote[l].index, remote[l].rank);CHKERRQ(ierr);
565e540f424SMichael Lange   }
566e540f424SMichael Lange   /* Clean up */
5671fd9873aSMichael Lange   ierr = DMLabelDestroy(&ovAdjByRank);CHKERRQ(ierr);
568b0a623aaSMatthew G. Knepley   PetscFunctionReturn(0);
569b0a623aaSMatthew G. Knepley }
57070034214SMatthew G. Knepley 
57124cc2ca5SMatthew G. Knepley /*@C
57224cc2ca5SMatthew G. Knepley   DMPlexCreateOverlapMigrationSF - Create an SF describing the new mesh distribution to make the overlap described by the input SF
57324cc2ca5SMatthew G. Knepley 
574d083f849SBarry Smith   Collective on dm
57524cc2ca5SMatthew G. Knepley 
57624cc2ca5SMatthew G. Knepley   Input Parameters:
57724cc2ca5SMatthew G. Knepley + dm          - The DM
57824cc2ca5SMatthew G. Knepley - overlapSF   - The SF mapping ghost points in overlap to owner points on other processes
57924cc2ca5SMatthew G. Knepley 
580064ec1f3Sprj-   Output Parameter:
581a2b725a8SWilliam Gropp . migrationSF - An SF that maps original points in old locations to points in new locations
58224cc2ca5SMatthew G. Knepley 
58324cc2ca5SMatthew G. Knepley   Level: developer
58424cc2ca5SMatthew G. Knepley 
585dccdeccaSVaclav Hapla .seealso: DMPlexCreateOverlapLabel(), DMPlexDistributeOverlap(), DMPlexDistribute()
58624cc2ca5SMatthew G. Knepley @*/
58746f9b1c3SMichael Lange PetscErrorCode DMPlexCreateOverlapMigrationSF(DM dm, PetscSF overlapSF, PetscSF *migrationSF)
58846f9b1c3SMichael Lange {
58946f9b1c3SMichael Lange   MPI_Comm           comm;
5909852e123SBarry Smith   PetscMPIInt        rank, size;
59146f9b1c3SMichael Lange   PetscInt           d, dim, p, pStart, pEnd, nroots, nleaves, newLeaves, point, numSharedPoints;
59246f9b1c3SMichael Lange   PetscInt          *pointDepths, *remoteDepths, *ilocal;
59346f9b1c3SMichael Lange   PetscInt          *depthRecv, *depthShift, *depthIdx;
59446f9b1c3SMichael Lange   PetscSFNode       *iremote;
59546f9b1c3SMichael Lange   PetscSF            pointSF;
59646f9b1c3SMichael Lange   const PetscInt    *sharedLocal;
59746f9b1c3SMichael Lange   const PetscSFNode *overlapRemote, *sharedRemote;
59846f9b1c3SMichael Lange   PetscErrorCode     ierr;
59946f9b1c3SMichael Lange 
60046f9b1c3SMichael Lange   PetscFunctionBegin;
60146f9b1c3SMichael Lange   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
60246f9b1c3SMichael Lange   ierr = PetscObjectGetComm((PetscObject)dm, &comm);CHKERRQ(ierr);
603ffc4695bSBarry Smith   ierr = MPI_Comm_rank(comm, &rank);CHKERRMPI(ierr);
604ffc4695bSBarry Smith   ierr = MPI_Comm_size(comm, &size);CHKERRMPI(ierr);
60546f9b1c3SMichael Lange   ierr = DMGetDimension(dm, &dim);CHKERRQ(ierr);
60646f9b1c3SMichael Lange 
60746f9b1c3SMichael Lange   /* Before building the migration SF we need to know the new stratum offsets */
60846f9b1c3SMichael Lange   ierr = PetscSFGetGraph(overlapSF, &nroots, &nleaves, NULL, &overlapRemote);CHKERRQ(ierr);
60946f9b1c3SMichael Lange   ierr = PetscMalloc2(nroots, &pointDepths, nleaves, &remoteDepths);CHKERRQ(ierr);
61046f9b1c3SMichael Lange   for (d=0; d<dim+1; d++) {
61146f9b1c3SMichael Lange     ierr = DMPlexGetDepthStratum(dm, d, &pStart, &pEnd);CHKERRQ(ierr);
61246f9b1c3SMichael Lange     for (p=pStart; p<pEnd; p++) pointDepths[p] = d;
61346f9b1c3SMichael Lange   }
61446f9b1c3SMichael Lange   for (p=0; p<nleaves; p++) remoteDepths[p] = -1;
615ad227feaSJunchao Zhang   ierr = PetscSFBcastBegin(overlapSF, MPIU_INT, pointDepths, remoteDepths,MPI_REPLACE);CHKERRQ(ierr);
616ad227feaSJunchao Zhang   ierr = PetscSFBcastEnd(overlapSF, MPIU_INT, pointDepths, remoteDepths,MPI_REPLACE);CHKERRQ(ierr);
61746f9b1c3SMichael Lange 
6182d4ee042Sprj-   /* Count received points in each stratum and compute the internal strata shift */
61946f9b1c3SMichael Lange   ierr = PetscMalloc3(dim+1, &depthRecv, dim+1, &depthShift, dim+1, &depthIdx);CHKERRQ(ierr);
62046f9b1c3SMichael Lange   for (d=0; d<dim+1; d++) depthRecv[d]=0;
62146f9b1c3SMichael Lange   for (p=0; p<nleaves; p++) depthRecv[remoteDepths[p]]++;
62246f9b1c3SMichael Lange   depthShift[dim] = 0;
62346f9b1c3SMichael Lange   for (d=0; d<dim; d++) depthShift[d] = depthRecv[dim];
62446f9b1c3SMichael Lange   for (d=1; d<dim; d++) depthShift[d] += depthRecv[0];
62546f9b1c3SMichael Lange   for (d=dim-2; d>0; d--) depthShift[d] += depthRecv[d+1];
62646f9b1c3SMichael Lange   for (d=0; d<dim+1; d++) {
62746f9b1c3SMichael Lange     ierr = DMPlexGetDepthStratum(dm, d, &pStart, &pEnd);CHKERRQ(ierr);
62846f9b1c3SMichael Lange     depthIdx[d] = pStart + depthShift[d];
62946f9b1c3SMichael Lange   }
63046f9b1c3SMichael Lange 
63146f9b1c3SMichael Lange   /* Form the overlap SF build an SF that describes the full overlap migration SF */
63246f9b1c3SMichael Lange   ierr = DMPlexGetChart(dm, &pStart, &pEnd);CHKERRQ(ierr);
63346f9b1c3SMichael Lange   newLeaves = pEnd - pStart + nleaves;
63409b7985cSMatthew G. Knepley   ierr = PetscMalloc1(newLeaves, &ilocal);CHKERRQ(ierr);
63509b7985cSMatthew G. Knepley   ierr = PetscMalloc1(newLeaves, &iremote);CHKERRQ(ierr);
63646f9b1c3SMichael Lange   /* First map local points to themselves */
63746f9b1c3SMichael Lange   for (d=0; d<dim+1; d++) {
63846f9b1c3SMichael Lange     ierr = DMPlexGetDepthStratum(dm, d, &pStart, &pEnd);CHKERRQ(ierr);
63946f9b1c3SMichael Lange     for (p=pStart; p<pEnd; p++) {
64046f9b1c3SMichael Lange       point = p + depthShift[d];
64146f9b1c3SMichael Lange       ilocal[point] = point;
64246f9b1c3SMichael Lange       iremote[point].index = p;
64346f9b1c3SMichael Lange       iremote[point].rank = rank;
64446f9b1c3SMichael Lange       depthIdx[d]++;
64546f9b1c3SMichael Lange     }
64646f9b1c3SMichael Lange   }
64746f9b1c3SMichael Lange 
64846f9b1c3SMichael Lange   /* Add in the remote roots for currently shared points */
64946f9b1c3SMichael Lange   ierr = DMGetPointSF(dm, &pointSF);CHKERRQ(ierr);
65046f9b1c3SMichael Lange   ierr = PetscSFGetGraph(pointSF, NULL, &numSharedPoints, &sharedLocal, &sharedRemote);CHKERRQ(ierr);
65146f9b1c3SMichael Lange   for (d=0; d<dim+1; d++) {
65246f9b1c3SMichael Lange     ierr = DMPlexGetDepthStratum(dm, d, &pStart, &pEnd);CHKERRQ(ierr);
65346f9b1c3SMichael Lange     for (p=0; p<numSharedPoints; p++) {
65446f9b1c3SMichael Lange       if (pStart <= sharedLocal[p] && sharedLocal[p] < pEnd) {
65546f9b1c3SMichael Lange         point = sharedLocal[p] + depthShift[d];
65646f9b1c3SMichael Lange         iremote[point].index = sharedRemote[p].index;
65746f9b1c3SMichael Lange         iremote[point].rank = sharedRemote[p].rank;
65846f9b1c3SMichael Lange       }
65946f9b1c3SMichael Lange     }
66046f9b1c3SMichael Lange   }
66146f9b1c3SMichael Lange 
66246f9b1c3SMichael Lange   /* Now add the incoming overlap points */
66346f9b1c3SMichael Lange   for (p=0; p<nleaves; p++) {
66446f9b1c3SMichael Lange     point = depthIdx[remoteDepths[p]];
66546f9b1c3SMichael Lange     ilocal[point] = point;
66646f9b1c3SMichael Lange     iremote[point].index = overlapRemote[p].index;
66746f9b1c3SMichael Lange     iremote[point].rank = overlapRemote[p].rank;
66846f9b1c3SMichael Lange     depthIdx[remoteDepths[p]]++;
66946f9b1c3SMichael Lange   }
67015fff7beSMatthew G. Knepley   ierr = PetscFree2(pointDepths,remoteDepths);CHKERRQ(ierr);
67146f9b1c3SMichael Lange 
67246f9b1c3SMichael Lange   ierr = PetscSFCreate(comm, migrationSF);CHKERRQ(ierr);
67346f9b1c3SMichael Lange   ierr = PetscObjectSetName((PetscObject) *migrationSF, "Overlap Migration SF");CHKERRQ(ierr);
67446f9b1c3SMichael Lange   ierr = PetscSFSetFromOptions(*migrationSF);CHKERRQ(ierr);
67546f9b1c3SMichael Lange   ierr = DMPlexGetChart(dm, &pStart, &pEnd);CHKERRQ(ierr);
67646f9b1c3SMichael Lange   ierr = PetscSFSetGraph(*migrationSF, pEnd-pStart, newLeaves, ilocal, PETSC_OWN_POINTER, iremote, PETSC_OWN_POINTER);CHKERRQ(ierr);
67746f9b1c3SMichael Lange 
67846f9b1c3SMichael Lange   ierr = PetscFree3(depthRecv, depthShift, depthIdx);CHKERRQ(ierr);
67970034214SMatthew G. Knepley   PetscFunctionReturn(0);
68070034214SMatthew G. Knepley }
68170034214SMatthew G. Knepley 
682a9f1d5b2SMichael Lange /*@
683f0e73a3dSToby Isaac   DMPlexStratifyMigrationSF - Rearrange the leaves of a migration sf for stratification.
684a9f1d5b2SMichael Lange 
685064ec1f3Sprj-   Input Parameters:
686a9f1d5b2SMichael Lange + dm          - The DM
687a9f1d5b2SMichael Lange - sf          - A star forest with non-ordered leaves, usually defining a DM point migration
688a9f1d5b2SMichael Lange 
689a9f1d5b2SMichael Lange   Output Parameter:
690a9f1d5b2SMichael Lange . migrationSF - A star forest with added leaf indirection that ensures the resulting DM is stratified
691a9f1d5b2SMichael Lange 
692412e9a14SMatthew G. Knepley   Note:
693412e9a14SMatthew G. Knepley   This lexicographically sorts by (depth, cellType)
694412e9a14SMatthew G. Knepley 
695a9f1d5b2SMichael Lange   Level: developer
696a9f1d5b2SMichael Lange 
697a9f1d5b2SMichael Lange .seealso: DMPlexPartitionLabelCreateSF(), DMPlexDistribute(), DMPlexDistributeOverlap()
698a9f1d5b2SMichael Lange @*/
699a9f1d5b2SMichael Lange PetscErrorCode DMPlexStratifyMigrationSF(DM dm, PetscSF sf, PetscSF *migrationSF)
700a9f1d5b2SMichael Lange {
701a9f1d5b2SMichael Lange   MPI_Comm           comm;
7029852e123SBarry Smith   PetscMPIInt        rank, size;
703412e9a14SMatthew G. Knepley   PetscInt           d, ldepth, depth, dim, p, pStart, pEnd, nroots, nleaves;
704412e9a14SMatthew G. Knepley   PetscSFNode       *pointDepths, *remoteDepths;
705412e9a14SMatthew G. Knepley   PetscInt          *ilocal;
706a9f1d5b2SMichael Lange   PetscInt          *depthRecv, *depthShift, *depthIdx;
707412e9a14SMatthew G. Knepley   PetscInt          *ctRecv,    *ctShift,    *ctIdx;
708a9f1d5b2SMichael Lange   const PetscSFNode *iremote;
709a9f1d5b2SMichael Lange   PetscErrorCode     ierr;
710a9f1d5b2SMichael Lange 
711a9f1d5b2SMichael Lange   PetscFunctionBegin;
712a9f1d5b2SMichael Lange   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
713a9f1d5b2SMichael Lange   ierr = PetscObjectGetComm((PetscObject) dm, &comm);CHKERRQ(ierr);
714ffc4695bSBarry Smith   ierr = MPI_Comm_rank(comm, &rank);CHKERRMPI(ierr);
715ffc4695bSBarry Smith   ierr = MPI_Comm_size(comm, &size);CHKERRMPI(ierr);
7167fab53ddSMatthew G. Knepley   ierr = DMPlexGetDepth(dm, &ldepth);CHKERRQ(ierr);
717412e9a14SMatthew G. Knepley   ierr = DMGetDimension(dm, &dim);CHKERRQ(ierr);
718b2566f29SBarry Smith   ierr = MPIU_Allreduce(&ldepth, &depth, 1, MPIU_INT, MPI_MAX, comm);CHKERRQ(ierr);
7197fab53ddSMatthew G. Knepley   if ((ldepth >= 0) && (depth != ldepth)) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Inconsistent Plex depth %d != %d", ldepth, depth);
72030b0ce1bSStefano Zampini   ierr = PetscLogEventBegin(DMPLEX_PartStratSF,dm,0,0,0);CHKERRQ(ierr);
721a9f1d5b2SMichael Lange 
722a9f1d5b2SMichael Lange   /* Before building the migration SF we need to know the new stratum offsets */
723a9f1d5b2SMichael Lange   ierr = PetscSFGetGraph(sf, &nroots, &nleaves, NULL, &iremote);CHKERRQ(ierr);
724a9f1d5b2SMichael Lange   ierr = PetscMalloc2(nroots, &pointDepths, nleaves, &remoteDepths);CHKERRQ(ierr);
7257fab53ddSMatthew G. Knepley   for (d = 0; d < depth+1; ++d) {
726a9f1d5b2SMichael Lange     ierr = DMPlexGetDepthStratum(dm, d, &pStart, &pEnd);CHKERRQ(ierr);
727f0e73a3dSToby Isaac     for (p = pStart; p < pEnd; ++p) {
728412e9a14SMatthew G. Knepley       DMPolytopeType ct;
729f0e73a3dSToby Isaac 
730412e9a14SMatthew G. Knepley       ierr = DMPlexGetCellType(dm, p, &ct);CHKERRQ(ierr);
731412e9a14SMatthew G. Knepley       pointDepths[p].index = d;
732412e9a14SMatthew G. Knepley       pointDepths[p].rank  = ct;
733f0e73a3dSToby Isaac     }
734412e9a14SMatthew G. Knepley   }
735412e9a14SMatthew G. Knepley   for (p = 0; p < nleaves; ++p) {remoteDepths[p].index = -1; remoteDepths[p].rank = -1;}
736ad227feaSJunchao Zhang   ierr = PetscSFBcastBegin(sf, MPIU_2INT, pointDepths, remoteDepths,MPI_REPLACE);CHKERRQ(ierr);
737ad227feaSJunchao Zhang   ierr = PetscSFBcastEnd(sf, MPIU_2INT, pointDepths, remoteDepths,MPI_REPLACE);CHKERRQ(ierr);
738412e9a14SMatthew G. Knepley   /* Count received points in each stratum and compute the internal strata shift */
739412e9a14SMatthew G. Knepley   ierr = PetscCalloc6(depth+1, &depthRecv, depth+1, &depthShift, depth+1, &depthIdx, DM_NUM_POLYTOPES, &ctRecv, DM_NUM_POLYTOPES, &ctShift, DM_NUM_POLYTOPES, &ctIdx);CHKERRQ(ierr);
740412e9a14SMatthew G. Knepley   for (p = 0; p < nleaves; ++p) {
741412e9a14SMatthew G. Knepley     if (remoteDepths[p].rank < 0) {
742412e9a14SMatthew G. Knepley       ++depthRecv[remoteDepths[p].index];
743412e9a14SMatthew G. Knepley     } else {
744412e9a14SMatthew G. Knepley       ++ctRecv[remoteDepths[p].rank];
745412e9a14SMatthew G. Knepley     }
746412e9a14SMatthew G. Knepley   }
747412e9a14SMatthew G. Knepley   {
748412e9a14SMatthew G. Knepley     PetscInt depths[4], dims[4], shift = 0, i, c;
749412e9a14SMatthew G. Knepley 
7508238f61eSMatthew G. Knepley     /* Cells (depth), Vertices (0), Faces (depth-1), Edges (1)
7518238f61eSMatthew G. Knepley          Consider DM_POLYTOPE_FV_GHOST and DM_POLYTOPE_INTERIOR_GHOST as cells
7528238f61eSMatthew G. Knepley      */
753412e9a14SMatthew G. Knepley     depths[0] = depth; depths[1] = 0; depths[2] = depth-1; depths[3] = 1;
754412e9a14SMatthew G. Knepley     dims[0]   = dim;   dims[1]   = 0; dims[2]   = dim-1;   dims[3]   = 1;
755412e9a14SMatthew G. Knepley     for (i = 0; i <= depth; ++i) {
756412e9a14SMatthew G. Knepley       const PetscInt dep = depths[i];
757412e9a14SMatthew G. Knepley       const PetscInt dim = dims[i];
758412e9a14SMatthew G. Knepley 
759412e9a14SMatthew G. Knepley       for (c = 0; c < DM_NUM_POLYTOPES; ++c) {
7608238f61eSMatthew G. Knepley         if (DMPolytopeTypeGetDim((DMPolytopeType) c) != dim && !(i == 0 && (c == DM_POLYTOPE_FV_GHOST || c == DM_POLYTOPE_INTERIOR_GHOST))) continue;
761412e9a14SMatthew G. Knepley         ctShift[c] = shift;
762412e9a14SMatthew G. Knepley         shift     += ctRecv[c];
763412e9a14SMatthew G. Knepley       }
764412e9a14SMatthew G. Knepley       depthShift[dep] = shift;
765412e9a14SMatthew G. Knepley       shift          += depthRecv[dep];
766412e9a14SMatthew G. Knepley     }
767412e9a14SMatthew G. Knepley     for (c = 0; c < DM_NUM_POLYTOPES; ++c) {
768412e9a14SMatthew G. Knepley       const PetscInt ctDim = DMPolytopeTypeGetDim((DMPolytopeType) c);
769412e9a14SMatthew G. Knepley 
7708238f61eSMatthew G. Knepley       if ((ctDim < 0 || ctDim > dim) && (c != DM_POLYTOPE_FV_GHOST && c != DM_POLYTOPE_INTERIOR_GHOST)) {
771412e9a14SMatthew G. Knepley         ctShift[c] = shift;
772412e9a14SMatthew G. Knepley         shift     += ctRecv[c];
773412e9a14SMatthew G. Knepley       }
774412e9a14SMatthew G. Knepley     }
775412e9a14SMatthew G. Knepley   }
776a9f1d5b2SMichael Lange   /* Derive a new local permutation based on stratified indices */
777a9f1d5b2SMichael Lange   ierr = PetscMalloc1(nleaves, &ilocal);CHKERRQ(ierr);
7787fab53ddSMatthew G. Knepley   for (p = 0; p < nleaves; ++p) {
779412e9a14SMatthew G. Knepley     const PetscInt       dep = remoteDepths[p].index;
780412e9a14SMatthew G. Knepley     const DMPolytopeType ct  = (DMPolytopeType) remoteDepths[p].rank;
7817fab53ddSMatthew G. Knepley 
782412e9a14SMatthew G. Knepley     if ((PetscInt) ct < 0) {
7837fab53ddSMatthew G. Knepley       ilocal[p] = depthShift[dep] + depthIdx[dep];
784412e9a14SMatthew G. Knepley       ++depthIdx[dep];
785412e9a14SMatthew G. Knepley     } else {
786412e9a14SMatthew G. Knepley       ilocal[p] = ctShift[ct] + ctIdx[ct];
787412e9a14SMatthew G. Knepley       ++ctIdx[ct];
788412e9a14SMatthew G. Knepley     }
789a9f1d5b2SMichael Lange   }
790a9f1d5b2SMichael Lange   ierr = PetscSFCreate(comm, migrationSF);CHKERRQ(ierr);
791a9f1d5b2SMichael Lange   ierr = PetscObjectSetName((PetscObject) *migrationSF, "Migration SF");CHKERRQ(ierr);
792a9f1d5b2SMichael Lange   ierr = PetscSFSetGraph(*migrationSF, nroots, nleaves, ilocal, PETSC_OWN_POINTER, iremote, PETSC_COPY_VALUES);CHKERRQ(ierr);
793a9f1d5b2SMichael Lange   ierr = PetscFree2(pointDepths,remoteDepths);CHKERRQ(ierr);
794412e9a14SMatthew G. Knepley   ierr = PetscFree6(depthRecv, depthShift, depthIdx, ctRecv, ctShift, ctIdx);CHKERRQ(ierr);
79530b0ce1bSStefano Zampini   ierr = PetscLogEventEnd(DMPLEX_PartStratSF,dm,0,0,0);CHKERRQ(ierr);
796a9f1d5b2SMichael Lange   PetscFunctionReturn(0);
797a9f1d5b2SMichael Lange }
798a9f1d5b2SMichael Lange 
79970034214SMatthew G. Knepley /*@
80070034214SMatthew G. Knepley   DMPlexDistributeField - Distribute field data to match a given PetscSF, usually the SF from mesh distribution
80170034214SMatthew G. Knepley 
802d083f849SBarry Smith   Collective on dm
80370034214SMatthew G. Knepley 
80470034214SMatthew G. Knepley   Input Parameters:
80570034214SMatthew G. Knepley + dm - The DMPlex object
80670034214SMatthew G. Knepley . pointSF - The PetscSF describing the communication pattern
80770034214SMatthew G. Knepley . originalSection - The PetscSection for existing data layout
808cb15cd0eSMatthew G. Knepley - originalVec - The existing data in a local vector
80970034214SMatthew G. Knepley 
81070034214SMatthew G. Knepley   Output Parameters:
81170034214SMatthew G. Knepley + newSection - The PetscSF describing the new data layout
812cb15cd0eSMatthew G. Knepley - newVec - The new data in a local vector
81370034214SMatthew G. Knepley 
81470034214SMatthew G. Knepley   Level: developer
81570034214SMatthew G. Knepley 
81670034214SMatthew G. Knepley .seealso: DMPlexDistribute(), DMPlexDistributeFieldIS(), DMPlexDistributeData()
81770034214SMatthew G. Knepley @*/
81870034214SMatthew G. Knepley PetscErrorCode DMPlexDistributeField(DM dm, PetscSF pointSF, PetscSection originalSection, Vec originalVec, PetscSection newSection, Vec newVec)
81970034214SMatthew G. Knepley {
82070034214SMatthew G. Knepley   PetscSF        fieldSF;
82170034214SMatthew G. Knepley   PetscInt      *remoteOffsets, fieldSize;
82270034214SMatthew G. Knepley   PetscScalar   *originalValues, *newValues;
82370034214SMatthew G. Knepley   PetscErrorCode ierr;
82470034214SMatthew G. Knepley 
82570034214SMatthew G. Knepley   PetscFunctionBegin;
82670034214SMatthew G. Knepley   ierr = PetscLogEventBegin(DMPLEX_DistributeField,dm,0,0,0);CHKERRQ(ierr);
82770034214SMatthew G. Knepley   ierr = PetscSFDistributeSection(pointSF, originalSection, &remoteOffsets, newSection);CHKERRQ(ierr);
82870034214SMatthew G. Knepley 
82970034214SMatthew G. Knepley   ierr = PetscSectionGetStorageSize(newSection, &fieldSize);CHKERRQ(ierr);
83070034214SMatthew G. Knepley   ierr = VecSetSizes(newVec, fieldSize, PETSC_DETERMINE);CHKERRQ(ierr);
83170034214SMatthew G. Knepley   ierr = VecSetType(newVec,dm->vectype);CHKERRQ(ierr);
83270034214SMatthew G. Knepley 
83370034214SMatthew G. Knepley   ierr = VecGetArray(originalVec, &originalValues);CHKERRQ(ierr);
83470034214SMatthew G. Knepley   ierr = VecGetArray(newVec, &newValues);CHKERRQ(ierr);
83570034214SMatthew G. Knepley   ierr = PetscSFCreateSectionSF(pointSF, originalSection, remoteOffsets, newSection, &fieldSF);CHKERRQ(ierr);
8368a713f3bSLawrence Mitchell   ierr = PetscFree(remoteOffsets);CHKERRQ(ierr);
837ad227feaSJunchao Zhang   ierr = PetscSFBcastBegin(fieldSF, MPIU_SCALAR, originalValues, newValues,MPI_REPLACE);CHKERRQ(ierr);
838ad227feaSJunchao Zhang   ierr = PetscSFBcastEnd(fieldSF, MPIU_SCALAR, originalValues, newValues,MPI_REPLACE);CHKERRQ(ierr);
83970034214SMatthew G. Knepley   ierr = PetscSFDestroy(&fieldSF);CHKERRQ(ierr);
84070034214SMatthew G. Knepley   ierr = VecRestoreArray(newVec, &newValues);CHKERRQ(ierr);
84170034214SMatthew G. Knepley   ierr = VecRestoreArray(originalVec, &originalValues);CHKERRQ(ierr);
84270034214SMatthew G. Knepley   ierr = PetscLogEventEnd(DMPLEX_DistributeField,dm,0,0,0);CHKERRQ(ierr);
84370034214SMatthew G. Knepley   PetscFunctionReturn(0);
84470034214SMatthew G. Knepley }
84570034214SMatthew G. Knepley 
84670034214SMatthew G. Knepley /*@
84770034214SMatthew G. Knepley   DMPlexDistributeFieldIS - Distribute field data to match a given PetscSF, usually the SF from mesh distribution
84870034214SMatthew G. Knepley 
849d083f849SBarry Smith   Collective on dm
85070034214SMatthew G. Knepley 
85170034214SMatthew G. Knepley   Input Parameters:
85270034214SMatthew G. Knepley + dm - The DMPlex object
85370034214SMatthew G. Knepley . pointSF - The PetscSF describing the communication pattern
85470034214SMatthew G. Knepley . originalSection - The PetscSection for existing data layout
85570034214SMatthew G. Knepley - originalIS - The existing data
85670034214SMatthew G. Knepley 
85770034214SMatthew G. Knepley   Output Parameters:
85870034214SMatthew G. Knepley + newSection - The PetscSF describing the new data layout
85970034214SMatthew G. Knepley - newIS - The new data
86070034214SMatthew G. Knepley 
86170034214SMatthew G. Knepley   Level: developer
86270034214SMatthew G. Knepley 
86370034214SMatthew G. Knepley .seealso: DMPlexDistribute(), DMPlexDistributeField(), DMPlexDistributeData()
86470034214SMatthew G. Knepley @*/
86570034214SMatthew G. Knepley PetscErrorCode DMPlexDistributeFieldIS(DM dm, PetscSF pointSF, PetscSection originalSection, IS originalIS, PetscSection newSection, IS *newIS)
86670034214SMatthew G. Knepley {
86770034214SMatthew G. Knepley   PetscSF         fieldSF;
86870034214SMatthew G. Knepley   PetscInt       *newValues, *remoteOffsets, fieldSize;
86970034214SMatthew G. Knepley   const PetscInt *originalValues;
87070034214SMatthew G. Knepley   PetscErrorCode  ierr;
87170034214SMatthew G. Knepley 
87270034214SMatthew G. Knepley   PetscFunctionBegin;
87370034214SMatthew G. Knepley   ierr = PetscLogEventBegin(DMPLEX_DistributeField,dm,0,0,0);CHKERRQ(ierr);
87470034214SMatthew G. Knepley   ierr = PetscSFDistributeSection(pointSF, originalSection, &remoteOffsets, newSection);CHKERRQ(ierr);
87570034214SMatthew G. Knepley 
87670034214SMatthew G. Knepley   ierr = PetscSectionGetStorageSize(newSection, &fieldSize);CHKERRQ(ierr);
877854ce69bSBarry Smith   ierr = PetscMalloc1(fieldSize, &newValues);CHKERRQ(ierr);
87870034214SMatthew G. Knepley 
87970034214SMatthew G. Knepley   ierr = ISGetIndices(originalIS, &originalValues);CHKERRQ(ierr);
88070034214SMatthew G. Knepley   ierr = PetscSFCreateSectionSF(pointSF, originalSection, remoteOffsets, newSection, &fieldSF);CHKERRQ(ierr);
8818a713f3bSLawrence Mitchell   ierr = PetscFree(remoteOffsets);CHKERRQ(ierr);
882ad227feaSJunchao Zhang   ierr = PetscSFBcastBegin(fieldSF, MPIU_INT, (PetscInt *) originalValues, newValues,MPI_REPLACE);CHKERRQ(ierr);
883ad227feaSJunchao Zhang   ierr = PetscSFBcastEnd(fieldSF, MPIU_INT, (PetscInt *) originalValues, newValues,MPI_REPLACE);CHKERRQ(ierr);
88470034214SMatthew G. Knepley   ierr = PetscSFDestroy(&fieldSF);CHKERRQ(ierr);
88570034214SMatthew G. Knepley   ierr = ISRestoreIndices(originalIS, &originalValues);CHKERRQ(ierr);
88670034214SMatthew G. Knepley   ierr = ISCreateGeneral(PetscObjectComm((PetscObject) pointSF), fieldSize, newValues, PETSC_OWN_POINTER, newIS);CHKERRQ(ierr);
88770034214SMatthew G. Knepley   ierr = PetscLogEventEnd(DMPLEX_DistributeField,dm,0,0,0);CHKERRQ(ierr);
88870034214SMatthew G. Knepley   PetscFunctionReturn(0);
88970034214SMatthew G. Knepley }
89070034214SMatthew G. Knepley 
89170034214SMatthew G. Knepley /*@
89270034214SMatthew G. Knepley   DMPlexDistributeData - Distribute field data to match a given PetscSF, usually the SF from mesh distribution
89370034214SMatthew G. Knepley 
894d083f849SBarry Smith   Collective on dm
89570034214SMatthew G. Knepley 
89670034214SMatthew G. Knepley   Input Parameters:
89770034214SMatthew G. Knepley + dm - The DMPlex object
89870034214SMatthew G. Knepley . pointSF - The PetscSF describing the communication pattern
89970034214SMatthew G. Knepley . originalSection - The PetscSection for existing data layout
90070034214SMatthew G. Knepley . datatype - The type of data
90170034214SMatthew G. Knepley - originalData - The existing data
90270034214SMatthew G. Knepley 
90370034214SMatthew G. Knepley   Output Parameters:
90470034214SMatthew G. Knepley + newSection - The PetscSection describing the new data layout
90570034214SMatthew G. Knepley - newData - The new data
90670034214SMatthew G. Knepley 
90770034214SMatthew G. Knepley   Level: developer
90870034214SMatthew G. Knepley 
90970034214SMatthew G. Knepley .seealso: DMPlexDistribute(), DMPlexDistributeField()
91070034214SMatthew G. Knepley @*/
91170034214SMatthew G. Knepley PetscErrorCode DMPlexDistributeData(DM dm, PetscSF pointSF, PetscSection originalSection, MPI_Datatype datatype, void *originalData, PetscSection newSection, void **newData)
91270034214SMatthew G. Knepley {
91370034214SMatthew G. Knepley   PetscSF        fieldSF;
91470034214SMatthew G. Knepley   PetscInt      *remoteOffsets, fieldSize;
91570034214SMatthew G. Knepley   PetscMPIInt    dataSize;
91670034214SMatthew G. Knepley   PetscErrorCode ierr;
91770034214SMatthew G. Knepley 
91870034214SMatthew G. Knepley   PetscFunctionBegin;
91970034214SMatthew G. Knepley   ierr = PetscLogEventBegin(DMPLEX_DistributeData,dm,0,0,0);CHKERRQ(ierr);
92070034214SMatthew G. Knepley   ierr = PetscSFDistributeSection(pointSF, originalSection, &remoteOffsets, newSection);CHKERRQ(ierr);
92170034214SMatthew G. Knepley 
92270034214SMatthew G. Knepley   ierr = PetscSectionGetStorageSize(newSection, &fieldSize);CHKERRQ(ierr);
923ffc4695bSBarry Smith   ierr = MPI_Type_size(datatype, &dataSize);CHKERRMPI(ierr);
92470034214SMatthew G. Knepley   ierr = PetscMalloc(fieldSize * dataSize, newData);CHKERRQ(ierr);
92570034214SMatthew G. Knepley 
92670034214SMatthew G. Knepley   ierr = PetscSFCreateSectionSF(pointSF, originalSection, remoteOffsets, newSection, &fieldSF);CHKERRQ(ierr);
9278a713f3bSLawrence Mitchell   ierr = PetscFree(remoteOffsets);CHKERRQ(ierr);
928ad227feaSJunchao Zhang   ierr = PetscSFBcastBegin(fieldSF, datatype, originalData, *newData,MPI_REPLACE);CHKERRQ(ierr);
929ad227feaSJunchao Zhang   ierr = PetscSFBcastEnd(fieldSF, datatype, originalData, *newData,MPI_REPLACE);CHKERRQ(ierr);
93070034214SMatthew G. Knepley   ierr = PetscSFDestroy(&fieldSF);CHKERRQ(ierr);
93170034214SMatthew G. Knepley   ierr = PetscLogEventEnd(DMPLEX_DistributeData,dm,0,0,0);CHKERRQ(ierr);
93270034214SMatthew G. Knepley   PetscFunctionReturn(0);
93370034214SMatthew G. Knepley }
93470034214SMatthew G. Knepley 
93524cc2ca5SMatthew G. Knepley static PetscErrorCode DMPlexDistributeCones(DM dm, PetscSF migrationSF, ISLocalToGlobalMapping original, ISLocalToGlobalMapping renumbering, DM dmParallel)
936cc71bff1SMichael Lange {
937cc71bff1SMichael Lange   DM_Plex               *pmesh = (DM_Plex*) (dmParallel)->data;
938cc71bff1SMichael Lange   MPI_Comm               comm;
939cc71bff1SMichael Lange   PetscSF                coneSF;
940cc71bff1SMichael Lange   PetscSection           originalConeSection, newConeSection;
941ac04eaf7SToby Isaac   PetscInt              *remoteOffsets, *cones, *globCones, *newCones, newConesSize;
942cc71bff1SMichael Lange   PetscBool              flg;
943cc71bff1SMichael Lange   PetscErrorCode         ierr;
944cc71bff1SMichael Lange 
945cc71bff1SMichael Lange   PetscFunctionBegin;
946cc71bff1SMichael Lange   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
9470c86c063SLisandro Dalcin   PetscValidHeaderSpecific(dmParallel, DM_CLASSID, 5);
9480c86c063SLisandro Dalcin   ierr = PetscLogEventBegin(DMPLEX_DistributeCones,dm,0,0,0);CHKERRQ(ierr);
949cc71bff1SMichael Lange   /* Distribute cone section */
950cc71bff1SMichael Lange   ierr = PetscObjectGetComm((PetscObject)dm, &comm);CHKERRQ(ierr);
951cc71bff1SMichael Lange   ierr = DMPlexGetConeSection(dm, &originalConeSection);CHKERRQ(ierr);
952cc71bff1SMichael Lange   ierr = DMPlexGetConeSection(dmParallel, &newConeSection);CHKERRQ(ierr);
953cc71bff1SMichael Lange   ierr = PetscSFDistributeSection(migrationSF, originalConeSection, &remoteOffsets, newConeSection);CHKERRQ(ierr);
954cc71bff1SMichael Lange   ierr = DMSetUp(dmParallel);CHKERRQ(ierr);
955cc71bff1SMichael Lange   {
956cc71bff1SMichael Lange     PetscInt pStart, pEnd, p;
957cc71bff1SMichael Lange 
958cc71bff1SMichael Lange     ierr = PetscSectionGetChart(newConeSection, &pStart, &pEnd);CHKERRQ(ierr);
959cc71bff1SMichael Lange     for (p = pStart; p < pEnd; ++p) {
960cc71bff1SMichael Lange       PetscInt coneSize;
961cc71bff1SMichael Lange       ierr               = PetscSectionGetDof(newConeSection, p, &coneSize);CHKERRQ(ierr);
962cc71bff1SMichael Lange       pmesh->maxConeSize = PetscMax(pmesh->maxConeSize, coneSize);
963cc71bff1SMichael Lange     }
964cc71bff1SMichael Lange   }
965cc71bff1SMichael Lange   /* Communicate and renumber cones */
966cc71bff1SMichael Lange   ierr = PetscSFCreateSectionSF(migrationSF, originalConeSection, remoteOffsets, newConeSection, &coneSF);CHKERRQ(ierr);
9678a713f3bSLawrence Mitchell   ierr = PetscFree(remoteOffsets);CHKERRQ(ierr);
968cc71bff1SMichael Lange   ierr = DMPlexGetCones(dm, &cones);CHKERRQ(ierr);
969ac04eaf7SToby Isaac   if (original) {
970ac04eaf7SToby Isaac     PetscInt numCones;
971ac04eaf7SToby Isaac 
972367003a6SStefano Zampini     ierr = PetscSectionGetStorageSize(originalConeSection,&numCones);CHKERRQ(ierr);
973367003a6SStefano Zampini     ierr = PetscMalloc1(numCones,&globCones);CHKERRQ(ierr);
974ac04eaf7SToby Isaac     ierr = ISLocalToGlobalMappingApplyBlock(original, numCones, cones, globCones);CHKERRQ(ierr);
975367003a6SStefano Zampini   } else {
976ac04eaf7SToby Isaac     globCones = cones;
977ac04eaf7SToby Isaac   }
978cc71bff1SMichael Lange   ierr = DMPlexGetCones(dmParallel, &newCones);CHKERRQ(ierr);
979ad227feaSJunchao Zhang   ierr = PetscSFBcastBegin(coneSF, MPIU_INT, globCones, newCones,MPI_REPLACE);CHKERRQ(ierr);
980ad227feaSJunchao Zhang   ierr = PetscSFBcastEnd(coneSF, MPIU_INT, globCones, newCones,MPI_REPLACE);CHKERRQ(ierr);
981ac04eaf7SToby Isaac   if (original) {
982ac04eaf7SToby Isaac     ierr = PetscFree(globCones);CHKERRQ(ierr);
983ac04eaf7SToby Isaac   }
984cc71bff1SMichael Lange   ierr = PetscSectionGetStorageSize(newConeSection, &newConesSize);CHKERRQ(ierr);
985cc71bff1SMichael Lange   ierr = ISGlobalToLocalMappingApplyBlock(renumbering, IS_GTOLM_MASK, newConesSize, newCones, NULL, newCones);CHKERRQ(ierr);
98676bd3646SJed Brown   if (PetscDefined(USE_DEBUG)) {
9873533c52bSMatthew G. Knepley     PetscInt  p;
9883533c52bSMatthew G. Knepley     PetscBool valid = PETSC_TRUE;
9893533c52bSMatthew G. Knepley     for (p = 0; p < newConesSize; ++p) {
990367003a6SStefano Zampini       if (newCones[p] < 0) {valid = PETSC_FALSE; ierr = PetscPrintf(PETSC_COMM_SELF, "[%d] Point %D not in overlap SF\n", PetscGlobalRank,p);CHKERRQ(ierr);}
9913533c52bSMatthew G. Knepley     }
9923533c52bSMatthew G. Knepley     if (!valid) SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Invalid global to local map");
9933533c52bSMatthew G. Knepley   }
994c5929fdfSBarry Smith   ierr = PetscOptionsHasName(((PetscObject) dm)->options,((PetscObject) dm)->prefix, "-cones_view", &flg);CHKERRQ(ierr);
995cc71bff1SMichael Lange   if (flg) {
996cc71bff1SMichael Lange     ierr = PetscPrintf(comm, "Serial Cone Section:\n");CHKERRQ(ierr);
997a8c5bd36SStefano Zampini     ierr = PetscSectionView(originalConeSection, PETSC_VIEWER_STDOUT_(comm));CHKERRQ(ierr);
998cc71bff1SMichael Lange     ierr = PetscPrintf(comm, "Parallel Cone Section:\n");CHKERRQ(ierr);
999a8c5bd36SStefano Zampini     ierr = PetscSectionView(newConeSection, PETSC_VIEWER_STDOUT_(comm));CHKERRQ(ierr);
1000cc71bff1SMichael Lange     ierr = PetscSFView(coneSF, NULL);CHKERRQ(ierr);
1001cc71bff1SMichael Lange   }
1002cc71bff1SMichael Lange   ierr = DMPlexGetConeOrientations(dm, &cones);CHKERRQ(ierr);
1003cc71bff1SMichael Lange   ierr = DMPlexGetConeOrientations(dmParallel, &newCones);CHKERRQ(ierr);
1004ad227feaSJunchao Zhang   ierr = PetscSFBcastBegin(coneSF, MPIU_INT, cones, newCones,MPI_REPLACE);CHKERRQ(ierr);
1005ad227feaSJunchao Zhang   ierr = PetscSFBcastEnd(coneSF, MPIU_INT, cones, newCones,MPI_REPLACE);CHKERRQ(ierr);
1006cc71bff1SMichael Lange   ierr = PetscSFDestroy(&coneSF);CHKERRQ(ierr);
1007cc71bff1SMichael Lange   ierr = PetscLogEventEnd(DMPLEX_DistributeCones,dm,0,0,0);CHKERRQ(ierr);
1008eaf898f9SPatrick Sanan   /* Create supports and stratify DMPlex */
1009cc71bff1SMichael Lange   {
1010cc71bff1SMichael Lange     PetscInt pStart, pEnd;
1011cc71bff1SMichael Lange 
1012cc71bff1SMichael Lange     ierr = PetscSectionGetChart(pmesh->coneSection, &pStart, &pEnd);CHKERRQ(ierr);
1013cc71bff1SMichael Lange     ierr = PetscSectionSetChart(pmesh->supportSection, pStart, pEnd);CHKERRQ(ierr);
1014cc71bff1SMichael Lange   }
1015cc71bff1SMichael Lange   ierr = DMPlexSymmetrize(dmParallel);CHKERRQ(ierr);
1016cc71bff1SMichael Lange   ierr = DMPlexStratify(dmParallel);CHKERRQ(ierr);
10171cf84007SMatthew G. Knepley   {
10181cf84007SMatthew G. Knepley     PetscBool useCone, useClosure, useAnchors;
10191cf84007SMatthew G. Knepley 
1020b0441da4SMatthew G. Knepley     ierr = DMGetBasicAdjacency(dm, &useCone, &useClosure);CHKERRQ(ierr);
1021b0441da4SMatthew G. Knepley     ierr = DMSetBasicAdjacency(dmParallel, useCone, useClosure);CHKERRQ(ierr);
10221cf84007SMatthew G. Knepley     ierr = DMPlexGetAdjacencyUseAnchors(dm, &useAnchors);CHKERRQ(ierr);
10231cf84007SMatthew G. Knepley     ierr = DMPlexSetAdjacencyUseAnchors(dmParallel, useAnchors);CHKERRQ(ierr);
10241cf84007SMatthew G. Knepley   }
1025cc71bff1SMichael Lange   PetscFunctionReturn(0);
1026cc71bff1SMichael Lange }
1027cc71bff1SMichael Lange 
102824cc2ca5SMatthew G. Knepley static PetscErrorCode DMPlexDistributeCoordinates(DM dm, PetscSF migrationSF, DM dmParallel)
10290df0e737SMichael Lange {
10300df0e737SMichael Lange   MPI_Comm         comm;
10310df0e737SMichael Lange   PetscSection     originalCoordSection, newCoordSection;
10320df0e737SMichael Lange   Vec              originalCoordinates, newCoordinates;
10330df0e737SMichael Lange   PetscInt         bs;
103490b157c4SStefano Zampini   PetscBool        isper;
10350df0e737SMichael Lange   const char      *name;
10360df0e737SMichael Lange   const PetscReal *maxCell, *L;
10375dc8c3f7SMatthew G. Knepley   const DMBoundaryType *bd;
10380df0e737SMichael Lange   PetscErrorCode   ierr;
10390df0e737SMichael Lange 
10400df0e737SMichael Lange   PetscFunctionBegin;
10410df0e737SMichael Lange   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
10420c86c063SLisandro Dalcin   PetscValidHeaderSpecific(dmParallel, DM_CLASSID, 3);
10430df0e737SMichael Lange 
10440df0e737SMichael Lange   ierr = PetscObjectGetComm((PetscObject)dm, &comm);CHKERRQ(ierr);
10450df0e737SMichael Lange   ierr = DMGetCoordinateSection(dm, &originalCoordSection);CHKERRQ(ierr);
10460df0e737SMichael Lange   ierr = DMGetCoordinateSection(dmParallel, &newCoordSection);CHKERRQ(ierr);
10470df0e737SMichael Lange   ierr = DMGetCoordinatesLocal(dm, &originalCoordinates);CHKERRQ(ierr);
10480df0e737SMichael Lange   if (originalCoordinates) {
10498b9ced59SLisandro Dalcin     ierr = VecCreate(PETSC_COMM_SELF, &newCoordinates);CHKERRQ(ierr);
10500df0e737SMichael Lange     ierr = PetscObjectGetName((PetscObject) originalCoordinates, &name);CHKERRQ(ierr);
10510df0e737SMichael Lange     ierr = PetscObjectSetName((PetscObject) newCoordinates, name);CHKERRQ(ierr);
10520df0e737SMichael Lange 
10530df0e737SMichael Lange     ierr = DMPlexDistributeField(dm, migrationSF, originalCoordSection, originalCoordinates, newCoordSection, newCoordinates);CHKERRQ(ierr);
10540df0e737SMichael Lange     ierr = DMSetCoordinatesLocal(dmParallel, newCoordinates);CHKERRQ(ierr);
10550df0e737SMichael Lange     ierr = VecGetBlockSize(originalCoordinates, &bs);CHKERRQ(ierr);
10560df0e737SMichael Lange     ierr = VecSetBlockSize(newCoordinates, bs);CHKERRQ(ierr);
10570df0e737SMichael Lange     ierr = VecDestroy(&newCoordinates);CHKERRQ(ierr);
10580df0e737SMichael Lange   }
105990b157c4SStefano Zampini   ierr = DMGetPeriodicity(dm, &isper, &maxCell, &L, &bd);CHKERRQ(ierr);
106090b157c4SStefano Zampini   ierr = DMSetPeriodicity(dmParallel, isper, maxCell, L, bd);CHKERRQ(ierr);
10610df0e737SMichael Lange   PetscFunctionReturn(0);
10620df0e737SMichael Lange }
10630df0e737SMichael Lange 
106424cc2ca5SMatthew G. Knepley static PetscErrorCode DMPlexDistributeLabels(DM dm, PetscSF migrationSF, DM dmParallel)
10650df0e737SMichael Lange {
1066df0420ecSMatthew G. Knepley   DM_Plex         *mesh = (DM_Plex*) dm->data;
10670df0e737SMichael Lange   MPI_Comm         comm;
10687980c9d4SMatthew G. Knepley   DMLabel          depthLabel;
10690df0e737SMichael Lange   PetscMPIInt      rank;
10707980c9d4SMatthew G. Knepley   PetscInt         depth, d, numLabels, numLocalLabels, l;
1071df0420ecSMatthew G. Knepley   PetscBool        hasLabels = PETSC_FALSE, lsendDepth, sendDepth;
1072df0420ecSMatthew G. Knepley   PetscObjectState depthState = -1;
10730df0e737SMichael Lange   PetscErrorCode   ierr;
10740df0e737SMichael Lange 
10750df0e737SMichael Lange   PetscFunctionBegin;
10760df0e737SMichael Lange   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
10770c86c063SLisandro Dalcin   PetscValidHeaderSpecific(dmParallel, DM_CLASSID, 3);
10780c86c063SLisandro Dalcin 
10790df0e737SMichael Lange   ierr = PetscLogEventBegin(DMPLEX_DistributeLabels,dm,0,0,0);CHKERRQ(ierr);
10800df0e737SMichael Lange   ierr = PetscObjectGetComm((PetscObject)dm, &comm);CHKERRQ(ierr);
1081ffc4695bSBarry Smith   ierr = MPI_Comm_rank(comm, &rank);CHKERRMPI(ierr);
10820df0e737SMichael Lange 
1083df0420ecSMatthew G. Knepley   /* If the user has changed the depth label, communicate it instead */
10847980c9d4SMatthew G. Knepley   ierr = DMPlexGetDepth(dm, &depth);CHKERRQ(ierr);
10857980c9d4SMatthew G. Knepley   ierr = DMPlexGetDepthLabel(dm, &depthLabel);CHKERRQ(ierr);
1086d67d17b1SMatthew G. Knepley   if (depthLabel) {ierr = PetscObjectStateGet((PetscObject) depthLabel, &depthState);CHKERRQ(ierr);}
1087df0420ecSMatthew G. Knepley   lsendDepth = mesh->depthState != depthState ? PETSC_TRUE : PETSC_FALSE;
1088b2566f29SBarry Smith   ierr = MPIU_Allreduce(&lsendDepth, &sendDepth, 1, MPIU_BOOL, MPI_LOR, comm);CHKERRQ(ierr);
1089df0420ecSMatthew G. Knepley   if (sendDepth) {
1090a7998027SVaclav Hapla     ierr = DMPlexGetDepthLabel(dmParallel, &dmParallel->depthLabel);CHKERRQ(ierr);
1091a7998027SVaclav Hapla     ierr = DMRemoveLabelBySelf(dmParallel, &dmParallel->depthLabel, PETSC_FALSE);CHKERRQ(ierr);
1092df0420ecSMatthew G. Knepley   }
1093d995df53SMatthew G. Knepley   /* Everyone must have either the same number of labels, or none */
1094c58f1c22SToby Isaac   ierr = DMGetNumLabels(dm, &numLocalLabels);CHKERRQ(ierr);
1095d995df53SMatthew G. Knepley   numLabels = numLocalLabels;
1096ffc4695bSBarry Smith   ierr = MPI_Bcast(&numLabels, 1, MPIU_INT, 0, comm);CHKERRMPI(ierr);
1097627847f0SMatthew G. Knepley   if (numLabels == numLocalLabels) hasLabels = PETSC_TRUE;
10985d80c0bfSVaclav Hapla   for (l = 0; l < numLabels; ++l) {
1099bdd2d751SMichael Lange     DMLabel     label = NULL, labelNew = NULL;
110083e10cb3SLisandro Dalcin     PetscBool   isDepth, lisOutput = PETSC_TRUE, isOutput;
1101d67d17b1SMatthew G. Knepley     const char *name = NULL;
11020df0e737SMichael Lange 
1103d67d17b1SMatthew G. Knepley     if (hasLabels) {
1104d67d17b1SMatthew G. Knepley       ierr = DMGetLabelByNum(dm, l, &label);CHKERRQ(ierr);
11050df0e737SMichael Lange       /* Skip "depth" because it is recreated */
1106d67d17b1SMatthew G. Knepley       ierr = PetscObjectGetName((PetscObject) label, &name);CHKERRQ(ierr);
1107d67d17b1SMatthew G. Knepley       ierr = PetscStrcmp(name, "depth", &isDepth);CHKERRQ(ierr);
1108d67d17b1SMatthew G. Knepley     }
1109ffc4695bSBarry Smith     ierr = MPI_Bcast(&isDepth, 1, MPIU_BOOL, 0, comm);CHKERRMPI(ierr);
111083e10cb3SLisandro Dalcin     if (isDepth && !sendDepth) continue;
1111bdd2d751SMichael Lange     ierr = DMLabelDistribute(label, migrationSF, &labelNew);CHKERRQ(ierr);
111283e10cb3SLisandro Dalcin     if (isDepth) {
11137980c9d4SMatthew G. Knepley       /* Put in any missing strata which can occur if users are managing the depth label themselves */
11147980c9d4SMatthew G. Knepley       PetscInt gdepth;
11157980c9d4SMatthew G. Knepley 
11167980c9d4SMatthew G. Knepley       ierr = MPIU_Allreduce(&depth, &gdepth, 1, MPIU_INT, MPI_MAX, comm);CHKERRQ(ierr);
11177980c9d4SMatthew G. Knepley       if ((depth >= 0) && (gdepth != depth)) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Inconsistent Plex depth %d != %d", depth, gdepth);
11187980c9d4SMatthew G. Knepley       for (d = 0; d <= gdepth; ++d) {
11197980c9d4SMatthew G. Knepley         PetscBool has;
11207980c9d4SMatthew G. Knepley 
11217980c9d4SMatthew G. Knepley         ierr = DMLabelHasStratum(labelNew, d, &has);CHKERRQ(ierr);
112283e10cb3SLisandro Dalcin         if (!has) {ierr = DMLabelAddStratum(labelNew, d);CHKERRQ(ierr);}
11237980c9d4SMatthew G. Knepley       }
11247980c9d4SMatthew G. Knepley     }
1125c58f1c22SToby Isaac     ierr = DMAddLabel(dmParallel, labelNew);CHKERRQ(ierr);
112683e10cb3SLisandro Dalcin     /* Put the output flag in the new label */
1127d67d17b1SMatthew G. Knepley     if (hasLabels) {ierr = DMGetLabelOutput(dm, name, &lisOutput);CHKERRQ(ierr);}
112883e10cb3SLisandro Dalcin     ierr = MPIU_Allreduce(&lisOutput, &isOutput, 1, MPIU_BOOL, MPI_LAND, comm);CHKERRQ(ierr);
1129d67d17b1SMatthew G. Knepley     ierr = PetscObjectGetName((PetscObject) labelNew, &name);CHKERRQ(ierr);
1130d67d17b1SMatthew G. Knepley     ierr = DMSetLabelOutput(dmParallel, name, isOutput);CHKERRQ(ierr);
113108f633c4SVaclav Hapla     ierr = DMLabelDestroy(&labelNew);CHKERRQ(ierr);
11320df0e737SMichael Lange   }
11330df0e737SMichael Lange   ierr = PetscLogEventEnd(DMPLEX_DistributeLabels,dm,0,0,0);CHKERRQ(ierr);
11340df0e737SMichael Lange   PetscFunctionReturn(0);
11350df0e737SMichael Lange }
11360df0e737SMichael Lange 
113724cc2ca5SMatthew G. Knepley static PetscErrorCode DMPlexDistributeSetupTree(DM dm, PetscSF migrationSF, ISLocalToGlobalMapping original, ISLocalToGlobalMapping renumbering, DM dmParallel)
1138a6f36705SMichael Lange {
113915078cd4SMichael Lange   DM_Plex        *mesh  = (DM_Plex*) dm->data;
114015078cd4SMichael Lange   DM_Plex        *pmesh = (DM_Plex*) (dmParallel)->data;
1141a6f36705SMichael Lange   MPI_Comm        comm;
1142a6f36705SMichael Lange   DM              refTree;
1143a6f36705SMichael Lange   PetscSection    origParentSection, newParentSection;
1144a6f36705SMichael Lange   PetscInt        *origParents, *origChildIDs;
1145a6f36705SMichael Lange   PetscBool       flg;
1146a6f36705SMichael Lange   PetscErrorCode  ierr;
1147a6f36705SMichael Lange 
1148a6f36705SMichael Lange   PetscFunctionBegin;
1149a6f36705SMichael Lange   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
11500c86c063SLisandro Dalcin   PetscValidHeaderSpecific(dmParallel, DM_CLASSID, 5);
1151a6f36705SMichael Lange   ierr = PetscObjectGetComm((PetscObject)dm, &comm);CHKERRQ(ierr);
1152a6f36705SMichael Lange 
1153a6f36705SMichael Lange   /* Set up tree */
1154a6f36705SMichael Lange   ierr = DMPlexGetReferenceTree(dm,&refTree);CHKERRQ(ierr);
1155a6f36705SMichael Lange   ierr = DMPlexSetReferenceTree(dmParallel,refTree);CHKERRQ(ierr);
1156a6f36705SMichael Lange   ierr = DMPlexGetTree(dm,&origParentSection,&origParents,&origChildIDs,NULL,NULL);CHKERRQ(ierr);
1157a6f36705SMichael Lange   if (origParentSection) {
1158a6f36705SMichael Lange     PetscInt        pStart, pEnd;
115908633170SToby Isaac     PetscInt        *newParents, *newChildIDs, *globParents;
1160a6f36705SMichael Lange     PetscInt        *remoteOffsetsParents, newParentSize;
1161a6f36705SMichael Lange     PetscSF         parentSF;
1162a6f36705SMichael Lange 
1163a6f36705SMichael Lange     ierr = DMPlexGetChart(dmParallel, &pStart, &pEnd);CHKERRQ(ierr);
1164a6f36705SMichael Lange     ierr = PetscSectionCreate(PetscObjectComm((PetscObject)dmParallel),&newParentSection);CHKERRQ(ierr);
1165a6f36705SMichael Lange     ierr = PetscSectionSetChart(newParentSection,pStart,pEnd);CHKERRQ(ierr);
1166a6f36705SMichael Lange     ierr = PetscSFDistributeSection(migrationSF, origParentSection, &remoteOffsetsParents, newParentSection);CHKERRQ(ierr);
1167a6f36705SMichael Lange     ierr = PetscSFCreateSectionSF(migrationSF, origParentSection, remoteOffsetsParents, newParentSection, &parentSF);CHKERRQ(ierr);
11688a713f3bSLawrence Mitchell     ierr = PetscFree(remoteOffsetsParents);CHKERRQ(ierr);
1169a6f36705SMichael Lange     ierr = PetscSectionGetStorageSize(newParentSection,&newParentSize);CHKERRQ(ierr);
1170a6f36705SMichael Lange     ierr = PetscMalloc2(newParentSize,&newParents,newParentSize,&newChildIDs);CHKERRQ(ierr);
117108633170SToby Isaac     if (original) {
117208633170SToby Isaac       PetscInt numParents;
117308633170SToby Isaac 
117408633170SToby Isaac       ierr = PetscSectionGetStorageSize(origParentSection,&numParents);CHKERRQ(ierr);
117508633170SToby Isaac       ierr = PetscMalloc1(numParents,&globParents);CHKERRQ(ierr);
117608633170SToby Isaac       ierr = ISLocalToGlobalMappingApplyBlock(original, numParents, origParents, globParents);CHKERRQ(ierr);
117708633170SToby Isaac     }
117808633170SToby Isaac     else {
117908633170SToby Isaac       globParents = origParents;
118008633170SToby Isaac     }
1181ad227feaSJunchao Zhang     ierr = PetscSFBcastBegin(parentSF, MPIU_INT, globParents, newParents,MPI_REPLACE);CHKERRQ(ierr);
1182ad227feaSJunchao Zhang     ierr = PetscSFBcastEnd(parentSF, MPIU_INT, globParents, newParents,MPI_REPLACE);CHKERRQ(ierr);
118308633170SToby Isaac     if (original) {
118408633170SToby Isaac       ierr = PetscFree(globParents);CHKERRQ(ierr);
118508633170SToby Isaac     }
1186ad227feaSJunchao Zhang     ierr = PetscSFBcastBegin(parentSF, MPIU_INT, origChildIDs, newChildIDs,MPI_REPLACE);CHKERRQ(ierr);
1187ad227feaSJunchao Zhang     ierr = PetscSFBcastEnd(parentSF, MPIU_INT, origChildIDs, newChildIDs,MPI_REPLACE);CHKERRQ(ierr);
1188a6f36705SMichael Lange     ierr = ISGlobalToLocalMappingApplyBlock(renumbering,IS_GTOLM_MASK, newParentSize, newParents, NULL, newParents);CHKERRQ(ierr);
118976bd3646SJed Brown     if (PetscDefined(USE_DEBUG)) {
11904a54e071SToby Isaac       PetscInt  p;
11914a54e071SToby Isaac       PetscBool valid = PETSC_TRUE;
11924a54e071SToby Isaac       for (p = 0; p < newParentSize; ++p) {
11934a54e071SToby Isaac         if (newParents[p] < 0) {valid = PETSC_FALSE; ierr = PetscPrintf(PETSC_COMM_SELF, "Point %d not in overlap SF\n", p);CHKERRQ(ierr);}
11944a54e071SToby Isaac       }
11954a54e071SToby Isaac       if (!valid) SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Invalid global to local map");
11964a54e071SToby Isaac     }
1197c5929fdfSBarry Smith     ierr = PetscOptionsHasName(((PetscObject) dm)->options,((PetscObject) dm)->prefix, "-parents_view", &flg);CHKERRQ(ierr);
1198a6f36705SMichael Lange     if (flg) {
1199a6f36705SMichael Lange       ierr = PetscPrintf(comm, "Serial Parent Section: \n");CHKERRQ(ierr);
1200a8c5bd36SStefano Zampini       ierr = PetscSectionView(origParentSection, PETSC_VIEWER_STDOUT_(comm));CHKERRQ(ierr);
1201a6f36705SMichael Lange       ierr = PetscPrintf(comm, "Parallel Parent Section: \n");CHKERRQ(ierr);
1202a8c5bd36SStefano Zampini       ierr = PetscSectionView(newParentSection, PETSC_VIEWER_STDOUT_(comm));CHKERRQ(ierr);
1203a6f36705SMichael Lange       ierr = PetscSFView(parentSF, NULL);CHKERRQ(ierr);
1204a6f36705SMichael Lange     }
1205a6f36705SMichael Lange     ierr = DMPlexSetTree(dmParallel,newParentSection,newParents,newChildIDs);CHKERRQ(ierr);
1206a6f36705SMichael Lange     ierr = PetscSectionDestroy(&newParentSection);CHKERRQ(ierr);
1207a6f36705SMichael Lange     ierr = PetscFree2(newParents,newChildIDs);CHKERRQ(ierr);
1208a6f36705SMichael Lange     ierr = PetscSFDestroy(&parentSF);CHKERRQ(ierr);
1209a6f36705SMichael Lange   }
121015078cd4SMichael Lange   pmesh->useAnchors = mesh->useAnchors;
1211a6f36705SMichael Lange   PetscFunctionReturn(0);
1212a6f36705SMichael Lange }
12130df0e737SMichael Lange 
121424cc2ca5SMatthew G. Knepley PETSC_UNUSED static PetscErrorCode DMPlexDistributeSF(DM dm, PetscSF migrationSF, DM dmParallel)
12154eca1733SMichael Lange {
12169852e123SBarry Smith   PetscMPIInt            rank, size;
12174eca1733SMichael Lange   MPI_Comm               comm;
12184eca1733SMichael Lange   PetscErrorCode         ierr;
12194eca1733SMichael Lange 
12204eca1733SMichael Lange   PetscFunctionBegin;
12214eca1733SMichael Lange   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
12220c86c063SLisandro Dalcin   PetscValidHeaderSpecific(dmParallel, DM_CLASSID, 3);
12234eca1733SMichael Lange 
12244eca1733SMichael Lange   /* Create point SF for parallel mesh */
12254eca1733SMichael Lange   ierr = PetscLogEventBegin(DMPLEX_DistributeSF,dm,0,0,0);CHKERRQ(ierr);
12264eca1733SMichael Lange   ierr = PetscObjectGetComm((PetscObject)dm, &comm);CHKERRQ(ierr);
1227ffc4695bSBarry Smith   ierr = MPI_Comm_rank(comm, &rank);CHKERRMPI(ierr);
1228ffc4695bSBarry Smith   ierr = MPI_Comm_size(comm, &size);CHKERRMPI(ierr);
12294eca1733SMichael Lange   {
12304eca1733SMichael Lange     const PetscInt *leaves;
12314eca1733SMichael Lange     PetscSFNode    *remotePoints, *rowners, *lowners;
12324eca1733SMichael Lange     PetscInt        numRoots, numLeaves, numGhostPoints = 0, p, gp, *ghostPoints;
12334eca1733SMichael Lange     PetscInt        pStart, pEnd;
12344eca1733SMichael Lange 
12354eca1733SMichael Lange     ierr = DMPlexGetChart(dmParallel, &pStart, &pEnd);CHKERRQ(ierr);
12364eca1733SMichael Lange     ierr = PetscSFGetGraph(migrationSF, &numRoots, &numLeaves, &leaves, NULL);CHKERRQ(ierr);
12374eca1733SMichael Lange     ierr = PetscMalloc2(numRoots,&rowners,numLeaves,&lowners);CHKERRQ(ierr);
12384eca1733SMichael Lange     for (p=0; p<numRoots; p++) {
12394eca1733SMichael Lange       rowners[p].rank  = -1;
12404eca1733SMichael Lange       rowners[p].index = -1;
12414eca1733SMichael Lange     }
1242ad227feaSJunchao Zhang     ierr = PetscSFBcastBegin(migrationSF, MPIU_2INT, rowners, lowners,MPI_REPLACE);CHKERRQ(ierr);
1243ad227feaSJunchao Zhang     ierr = PetscSFBcastEnd(migrationSF, MPIU_2INT, rowners, lowners,MPI_REPLACE);CHKERRQ(ierr);
12444eca1733SMichael Lange     for (p = 0; p < numLeaves; ++p) {
12454eca1733SMichael Lange       if (lowners[p].rank < 0 || lowners[p].rank == rank) { /* Either put in a bid or we know we own it */
12464eca1733SMichael Lange         lowners[p].rank  = rank;
12474eca1733SMichael Lange         lowners[p].index = leaves ? leaves[p] : p;
12484eca1733SMichael Lange       } else if (lowners[p].rank >= 0) { /* Point already claimed so flag so that MAXLOC does not listen to us */
12494eca1733SMichael Lange         lowners[p].rank  = -2;
12504eca1733SMichael Lange         lowners[p].index = -2;
12514eca1733SMichael Lange       }
12524eca1733SMichael Lange     }
12534eca1733SMichael Lange     for (p=0; p<numRoots; p++) { /* Root must not participate in the rediction, flag so that MAXLOC does not use */
12544eca1733SMichael Lange       rowners[p].rank  = -3;
12554eca1733SMichael Lange       rowners[p].index = -3;
12564eca1733SMichael Lange     }
12574eca1733SMichael Lange     ierr = PetscSFReduceBegin(migrationSF, MPIU_2INT, lowners, rowners, MPI_MAXLOC);CHKERRQ(ierr);
12584eca1733SMichael Lange     ierr = PetscSFReduceEnd(migrationSF, MPIU_2INT, lowners, rowners, MPI_MAXLOC);CHKERRQ(ierr);
1259ad227feaSJunchao Zhang     ierr = PetscSFBcastBegin(migrationSF, MPIU_2INT, rowners, lowners,MPI_REPLACE);CHKERRQ(ierr);
1260ad227feaSJunchao Zhang     ierr = PetscSFBcastEnd(migrationSF, MPIU_2INT, rowners, lowners,MPI_REPLACE);CHKERRQ(ierr);
12614eca1733SMichael Lange     for (p = 0; p < numLeaves; ++p) {
12624eca1733SMichael Lange       if (lowners[p].rank < 0 || lowners[p].index < 0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Cell partition corrupt: point not claimed");
12634eca1733SMichael Lange       if (lowners[p].rank != rank) ++numGhostPoints;
12644eca1733SMichael Lange     }
12654eca1733SMichael Lange     ierr = PetscMalloc1(numGhostPoints, &ghostPoints);CHKERRQ(ierr);
12664eca1733SMichael Lange     ierr = PetscMalloc1(numGhostPoints, &remotePoints);CHKERRQ(ierr);
12674eca1733SMichael Lange     for (p = 0, gp = 0; p < numLeaves; ++p) {
12684eca1733SMichael Lange       if (lowners[p].rank != rank) {
12694eca1733SMichael Lange         ghostPoints[gp]        = leaves ? leaves[p] : p;
12704eca1733SMichael Lange         remotePoints[gp].rank  = lowners[p].rank;
12714eca1733SMichael Lange         remotePoints[gp].index = lowners[p].index;
12724eca1733SMichael Lange         ++gp;
12734eca1733SMichael Lange       }
12744eca1733SMichael Lange     }
12754eca1733SMichael Lange     ierr = PetscFree2(rowners,lowners);CHKERRQ(ierr);
12764eca1733SMichael Lange     ierr = PetscSFSetGraph((dmParallel)->sf, pEnd - pStart, numGhostPoints, ghostPoints, PETSC_OWN_POINTER, remotePoints, PETSC_OWN_POINTER);CHKERRQ(ierr);
12774eca1733SMichael Lange     ierr = PetscSFSetFromOptions((dmParallel)->sf);CHKERRQ(ierr);
12784eca1733SMichael Lange   }
12791cf84007SMatthew G. Knepley   {
12801cf84007SMatthew G. Knepley     PetscBool useCone, useClosure, useAnchors;
12811cf84007SMatthew G. Knepley 
1282b0441da4SMatthew G. Knepley     ierr = DMGetBasicAdjacency(dm, &useCone, &useClosure);CHKERRQ(ierr);
1283b0441da4SMatthew G. Knepley     ierr = DMSetBasicAdjacency(dmParallel, useCone, useClosure);CHKERRQ(ierr);
12841cf84007SMatthew G. Knepley     ierr = DMPlexGetAdjacencyUseAnchors(dm, &useAnchors);CHKERRQ(ierr);
12851cf84007SMatthew G. Knepley     ierr = DMPlexSetAdjacencyUseAnchors(dmParallel, useAnchors);CHKERRQ(ierr);
12861cf84007SMatthew G. Knepley   }
12874eca1733SMichael Lange   ierr = PetscLogEventEnd(DMPLEX_DistributeSF,dm,0,0,0);CHKERRQ(ierr);
12884eca1733SMichael Lange   PetscFunctionReturn(0);
12894eca1733SMichael Lange }
12904eca1733SMichael Lange 
129198ba2d7fSLawrence Mitchell /*@
129298ba2d7fSLawrence Mitchell   DMPlexSetPartitionBalance - Should distribution of the DM attempt to balance the shared point partition?
129398ba2d7fSLawrence Mitchell 
129498ba2d7fSLawrence Mitchell   Input Parameters:
129598ba2d7fSLawrence Mitchell + dm - The DMPlex object
129698ba2d7fSLawrence Mitchell - flg - Balance the partition?
129798ba2d7fSLawrence Mitchell 
129898ba2d7fSLawrence Mitchell   Level: intermediate
129998ba2d7fSLawrence Mitchell 
130098ba2d7fSLawrence Mitchell .seealso: DMPlexDistribute(), DMPlexGetPartitionBalance()
130198ba2d7fSLawrence Mitchell @*/
130298ba2d7fSLawrence Mitchell PetscErrorCode DMPlexSetPartitionBalance(DM dm, PetscBool flg)
130398ba2d7fSLawrence Mitchell {
130498ba2d7fSLawrence Mitchell   DM_Plex *mesh = (DM_Plex *)dm->data;
130598ba2d7fSLawrence Mitchell 
130698ba2d7fSLawrence Mitchell   PetscFunctionBegin;
130798ba2d7fSLawrence Mitchell   mesh->partitionBalance = flg;
130898ba2d7fSLawrence Mitchell   PetscFunctionReturn(0);
130998ba2d7fSLawrence Mitchell }
131098ba2d7fSLawrence Mitchell 
131198ba2d7fSLawrence Mitchell /*@
131298ba2d7fSLawrence Mitchell   DMPlexGetPartitionBalance - Does distribution of the DM attempt to balance the shared point partition?
131398ba2d7fSLawrence Mitchell 
131498ba2d7fSLawrence Mitchell   Input Parameter:
1315a2b725a8SWilliam Gropp . dm - The DMPlex object
131698ba2d7fSLawrence Mitchell 
131798ba2d7fSLawrence Mitchell   Output Parameter:
1318a2b725a8SWilliam Gropp . flg - Balance the partition?
131998ba2d7fSLawrence Mitchell 
132098ba2d7fSLawrence Mitchell   Level: intermediate
132198ba2d7fSLawrence Mitchell 
132298ba2d7fSLawrence Mitchell .seealso: DMPlexDistribute(), DMPlexSetPartitionBalance()
132398ba2d7fSLawrence Mitchell @*/
132498ba2d7fSLawrence Mitchell PetscErrorCode DMPlexGetPartitionBalance(DM dm, PetscBool *flg)
132598ba2d7fSLawrence Mitchell {
132698ba2d7fSLawrence Mitchell   DM_Plex *mesh = (DM_Plex *)dm->data;
132798ba2d7fSLawrence Mitchell 
132898ba2d7fSLawrence Mitchell   PetscFunctionBegin;
132998ba2d7fSLawrence Mitchell   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
1330534a8f05SLisandro Dalcin   PetscValidBoolPointer(flg, 2);
133198ba2d7fSLawrence Mitchell   *flg = mesh->partitionBalance;
133298ba2d7fSLawrence Mitchell   PetscFunctionReturn(0);
133398ba2d7fSLawrence Mitchell }
133498ba2d7fSLawrence Mitchell 
1335fc02256fSLawrence Mitchell typedef struct {
1336fc02256fSLawrence Mitchell   PetscInt vote, rank, index;
1337fc02256fSLawrence Mitchell } Petsc3Int;
1338fc02256fSLawrence Mitchell 
1339fc02256fSLawrence Mitchell /* MaxLoc, but carry a third piece of information around */
13402eb0eadbSSatish Balay static void MPIAPI MaxLocCarry(void *in_, void *inout_, PetscMPIInt *len_, MPI_Datatype *dtype)
1341fc02256fSLawrence Mitchell {
1342fc02256fSLawrence Mitchell   Petsc3Int *a = (Petsc3Int *)inout_;
1343fc02256fSLawrence Mitchell   Petsc3Int *b = (Petsc3Int *)in_;
1344fc02256fSLawrence Mitchell   PetscInt i, len = *len_;
1345fc02256fSLawrence Mitchell   for (i = 0; i < len; i++) {
1346fc02256fSLawrence Mitchell     if (a[i].vote < b[i].vote) {
1347fc02256fSLawrence Mitchell       a[i].vote = b[i].vote;
1348fc02256fSLawrence Mitchell       a[i].rank = b[i].rank;
1349fc02256fSLawrence Mitchell       a[i].index = b[i].index;
1350fc02256fSLawrence Mitchell     } else if (a[i].vote <= b[i].vote) {
1351fc02256fSLawrence Mitchell       if (a[i].rank >= b[i].rank) {
1352fc02256fSLawrence Mitchell         a[i].rank = b[i].rank;
1353fc02256fSLawrence Mitchell         a[i].index = b[i].index;
1354fc02256fSLawrence Mitchell       }
1355fc02256fSLawrence Mitchell     }
1356fc02256fSLawrence Mitchell   }
1357fc02256fSLawrence Mitchell }
1358fc02256fSLawrence Mitchell 
1359f5bf2dbfSMichael Lange /*@C
1360a8c5bd36SStefano Zampini   DMPlexCreatePointSF - Build a point SF from an SF describing a point migration
1361f5bf2dbfSMichael Lange 
1362064ec1f3Sprj-   Input Parameters:
1363f5bf2dbfSMichael Lange + dm          - The source DMPlex object
1364f5bf2dbfSMichael Lange . migrationSF - The star forest that describes the parallel point remapping
13651627f6ccSMichael Lange . ownership   - Flag causing a vote to determine point ownership
1366f5bf2dbfSMichael Lange 
1367f5bf2dbfSMichael Lange   Output Parameter:
1368f5bf2dbfSMichael Lange - pointSF     - The star forest describing the point overlap in the remapped DM
1369f5bf2dbfSMichael Lange 
13703618482eSVaclav Hapla   Notes:
13713618482eSVaclav Hapla   Output pointSF is guaranteed to have the array of local indices (leaves) sorted.
13723618482eSVaclav Hapla 
1373f5bf2dbfSMichael Lange   Level: developer
1374f5bf2dbfSMichael Lange 
1375f5bf2dbfSMichael Lange .seealso: DMPlexDistribute(), DMPlexDistributeOverlap()
1376f5bf2dbfSMichael Lange @*/
1377f5bf2dbfSMichael Lange PetscErrorCode DMPlexCreatePointSF(DM dm, PetscSF migrationSF, PetscBool ownership, PetscSF *pointSF)
1378f5bf2dbfSMichael Lange {
137923193802SMatthew G. Knepley   PetscMPIInt        rank, size;
13801627f6ccSMichael Lange   PetscInt           p, nroots, nleaves, idx, npointLeaves;
1381f5bf2dbfSMichael Lange   PetscInt          *pointLocal;
1382f5bf2dbfSMichael Lange   const PetscInt    *leaves;
1383f5bf2dbfSMichael Lange   const PetscSFNode *roots;
1384f5bf2dbfSMichael Lange   PetscSFNode       *rootNodes, *leafNodes, *pointRemote;
138523193802SMatthew G. Knepley   Vec                shifts;
1386cae3e4f3SLawrence Mitchell   const PetscInt     numShifts = 13759;
138723193802SMatthew G. Knepley   const PetscScalar *shift = NULL;
138823193802SMatthew G. Knepley   const PetscBool    shiftDebug = PETSC_FALSE;
138998ba2d7fSLawrence Mitchell   PetscBool          balance;
1390f5bf2dbfSMichael Lange   PetscErrorCode     ierr;
1391f5bf2dbfSMichael Lange 
1392f5bf2dbfSMichael Lange   PetscFunctionBegin;
1393f5bf2dbfSMichael Lange   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
1394ffc4695bSBarry Smith   ierr = MPI_Comm_rank(PetscObjectComm((PetscObject) dm), &rank);CHKERRMPI(ierr);
1395ffc4695bSBarry Smith   ierr = MPI_Comm_size(PetscObjectComm((PetscObject) dm), &size);CHKERRMPI(ierr);
139630b0ce1bSStefano Zampini   ierr = PetscLogEventBegin(DMPLEX_CreatePointSF,dm,0,0,0);CHKERRQ(ierr);
1397f5bf2dbfSMichael Lange 
139898ba2d7fSLawrence Mitchell   ierr = DMPlexGetPartitionBalance(dm, &balance);CHKERRQ(ierr);
1399f5bf2dbfSMichael Lange   ierr = PetscSFGetGraph(migrationSF, &nroots, &nleaves, &leaves, &roots);CHKERRQ(ierr);
1400f5bf2dbfSMichael Lange   ierr = PetscMalloc2(nroots, &rootNodes, nleaves, &leafNodes);CHKERRQ(ierr);
1401f5bf2dbfSMichael Lange   if (ownership) {
1402fc02256fSLawrence Mitchell     MPI_Op       op;
1403fc02256fSLawrence Mitchell     MPI_Datatype datatype;
1404fc02256fSLawrence Mitchell     Petsc3Int   *rootVote = NULL, *leafVote = NULL;
140523193802SMatthew G. Knepley     /* If balancing, we compute a random cyclic shift of the rank for each remote point. That way, the max will evenly distribute among ranks. */
140698ba2d7fSLawrence Mitchell     if (balance) {
140723193802SMatthew G. Knepley       PetscRandom r;
140823193802SMatthew G. Knepley 
140923193802SMatthew G. Knepley       ierr = PetscRandomCreate(PETSC_COMM_SELF, &r);CHKERRQ(ierr);
1410cae3e4f3SLawrence Mitchell       ierr = PetscRandomSetInterval(r, 0, 2467*size);CHKERRQ(ierr);
141123193802SMatthew G. Knepley       ierr = VecCreate(PETSC_COMM_SELF, &shifts);CHKERRQ(ierr);
141223193802SMatthew G. Knepley       ierr = VecSetSizes(shifts, numShifts, numShifts);CHKERRQ(ierr);
141323193802SMatthew G. Knepley       ierr = VecSetType(shifts, VECSTANDARD);CHKERRQ(ierr);
141423193802SMatthew G. Knepley       ierr = VecSetRandom(shifts, r);CHKERRQ(ierr);
141523193802SMatthew G. Knepley       ierr = PetscRandomDestroy(&r);CHKERRQ(ierr);
141623193802SMatthew G. Knepley       ierr = VecGetArrayRead(shifts, &shift);CHKERRQ(ierr);
141723193802SMatthew G. Knepley     }
141823193802SMatthew G. Knepley 
1419fc02256fSLawrence Mitchell     ierr = PetscMalloc1(nroots, &rootVote);CHKERRQ(ierr);
1420fc02256fSLawrence Mitchell     ierr = PetscMalloc1(nleaves, &leafVote);CHKERRQ(ierr);
142123193802SMatthew G. Knepley     /* Point ownership vote: Process with highest rank owns shared points */
1422f5bf2dbfSMichael Lange     for (p = 0; p < nleaves; ++p) {
142323193802SMatthew G. Knepley       if (shiftDebug) {
1424e7bcd635SMatthew G. Knepley         ierr = PetscSynchronizedPrintf(PetscObjectComm((PetscObject) dm), "[%d] Point %D RemotePoint %D Shift %D MyRank %D\n", rank, leaves ? leaves[p] : p, roots[p].index, (PetscInt) PetscRealPart(shift[roots[p].index%numShifts]), (rank + (shift ? (PetscInt) PetscRealPart(shift[roots[p].index%numShifts]) : 0))%size);CHKERRQ(ierr);
142523193802SMatthew G. Knepley       }
1426f5bf2dbfSMichael Lange       /* Either put in a bid or we know we own it */
1427fc02256fSLawrence Mitchell       leafVote[p].vote  = (rank + (shift ? (PetscInt) PetscRealPart(shift[roots[p].index%numShifts]) : 0))%size;
1428fc02256fSLawrence Mitchell       leafVote[p].rank = rank;
1429fc02256fSLawrence Mitchell       leafVote[p].index = p;
1430f5bf2dbfSMichael Lange     }
1431f5bf2dbfSMichael Lange     for (p = 0; p < nroots; p++) {
14321627f6ccSMichael Lange       /* Root must not participate in the reduction, flag so that MAXLOC does not use */
1433fc02256fSLawrence Mitchell       rootVote[p].vote  = -3;
1434fc02256fSLawrence Mitchell       rootVote[p].rank  = -3;
1435fc02256fSLawrence Mitchell       rootVote[p].index = -3;
1436f5bf2dbfSMichael Lange     }
1437ffc4695bSBarry Smith     ierr = MPI_Type_contiguous(3, MPIU_INT, &datatype);CHKERRMPI(ierr);
1438ffc4695bSBarry Smith     ierr = MPI_Type_commit(&datatype);CHKERRMPI(ierr);
1439ffc4695bSBarry Smith     ierr = MPI_Op_create(&MaxLocCarry, 1, &op);CHKERRMPI(ierr);
1440fc02256fSLawrence Mitchell     ierr = PetscSFReduceBegin(migrationSF, datatype, leafVote, rootVote, op);CHKERRQ(ierr);
1441fc02256fSLawrence Mitchell     ierr = PetscSFReduceEnd(migrationSF, datatype, leafVote, rootVote, op);CHKERRQ(ierr);
1442ffc4695bSBarry Smith     ierr = MPI_Op_free(&op);CHKERRMPI(ierr);
1443ffc4695bSBarry Smith     ierr = MPI_Type_free(&datatype);CHKERRMPI(ierr);
1444c091126eSLawrence Mitchell     for (p = 0; p < nroots; p++) {
1445fc02256fSLawrence Mitchell       rootNodes[p].rank = rootVote[p].rank;
1446fc02256fSLawrence Mitchell       rootNodes[p].index = rootVote[p].index;
1447c091126eSLawrence Mitchell     }
1448fc02256fSLawrence Mitchell     ierr = PetscFree(leafVote);CHKERRQ(ierr);
1449fc02256fSLawrence Mitchell     ierr = PetscFree(rootVote);CHKERRQ(ierr);
1450f5bf2dbfSMichael Lange   } else {
1451f5bf2dbfSMichael Lange     for (p = 0; p < nroots; p++) {
1452f5bf2dbfSMichael Lange       rootNodes[p].index = -1;
1453f5bf2dbfSMichael Lange       rootNodes[p].rank = rank;
1454fc02256fSLawrence Mitchell     }
1455f5bf2dbfSMichael Lange     for (p = 0; p < nleaves; p++) {
1456f5bf2dbfSMichael Lange       /* Write new local id into old location */
1457f5bf2dbfSMichael Lange       if (roots[p].rank == rank) {
14586462276dSToby Isaac         rootNodes[roots[p].index].index = leaves ? leaves[p] : p;
1459f5bf2dbfSMichael Lange       }
1460f5bf2dbfSMichael Lange     }
1461f5bf2dbfSMichael Lange   }
1462ad227feaSJunchao Zhang   ierr = PetscSFBcastBegin(migrationSF, MPIU_2INT, rootNodes, leafNodes,MPI_REPLACE);CHKERRQ(ierr);
1463ad227feaSJunchao Zhang   ierr = PetscSFBcastEnd(migrationSF, MPIU_2INT, rootNodes, leafNodes,MPI_REPLACE);CHKERRQ(ierr);
1464f5bf2dbfSMichael Lange 
146523193802SMatthew G. Knepley   for (npointLeaves = 0, p = 0; p < nleaves; p++) {
1466b0e1264bSMatthew G. Knepley     if (leafNodes[p].rank != rank) npointLeaves++;
146723193802SMatthew G. Knepley   }
14681627f6ccSMichael Lange   ierr = PetscMalloc1(npointLeaves, &pointLocal);CHKERRQ(ierr);
14691627f6ccSMichael Lange   ierr = PetscMalloc1(npointLeaves, &pointRemote);CHKERRQ(ierr);
1470f5bf2dbfSMichael Lange   for (idx = 0, p = 0; p < nleaves; p++) {
1471b0e1264bSMatthew G. Knepley     if (leafNodes[p].rank != rank) {
14723618482eSVaclav Hapla       /* Note that pointLocal is automatically sorted as it is sublist of 0, ..., nleaves-1 */
1473f5bf2dbfSMichael Lange       pointLocal[idx] = p;
1474f5bf2dbfSMichael Lange       pointRemote[idx] = leafNodes[p];
1475f5bf2dbfSMichael Lange       idx++;
1476f5bf2dbfSMichael Lange     }
1477f5bf2dbfSMichael Lange   }
147823193802SMatthew G. Knepley   if (shift) {
147923193802SMatthew G. Knepley     ierr = VecRestoreArrayRead(shifts, &shift);CHKERRQ(ierr);
148023193802SMatthew G. Knepley     ierr = VecDestroy(&shifts);CHKERRQ(ierr);
148123193802SMatthew G. Knepley   }
148223193802SMatthew G. Knepley   if (shiftDebug) {ierr = PetscSynchronizedFlush(PetscObjectComm((PetscObject) dm), PETSC_STDOUT);CHKERRQ(ierr);}
1483f5bf2dbfSMichael Lange   ierr = PetscSFCreate(PetscObjectComm((PetscObject) dm), pointSF);CHKERRQ(ierr);
14841627f6ccSMichael Lange   ierr = PetscSFSetFromOptions(*pointSF);CHKERRQ(ierr);
1485f5bf2dbfSMichael Lange   ierr = PetscSFSetGraph(*pointSF, nleaves, npointLeaves, pointLocal, PETSC_OWN_POINTER, pointRemote, PETSC_OWN_POINTER);CHKERRQ(ierr);
1486f5bf2dbfSMichael Lange   ierr = PetscFree2(rootNodes, leafNodes);CHKERRQ(ierr);
148730b0ce1bSStefano Zampini   ierr = PetscLogEventEnd(DMPLEX_CreatePointSF,dm,0,0,0);CHKERRQ(ierr);
1488f5bf2dbfSMichael Lange   PetscFunctionReturn(0);
1489f5bf2dbfSMichael Lange }
1490f5bf2dbfSMichael Lange 
149115078cd4SMichael Lange /*@C
149215078cd4SMichael Lange   DMPlexMigrate  - Migrates internal DM data over the supplied star forest
149315078cd4SMichael Lange 
1494d083f849SBarry Smith   Collective on dm
149583655b49SVáclav Hapla 
1496064ec1f3Sprj-   Input Parameters:
149715078cd4SMichael Lange + dm       - The source DMPlex object
14981627f6ccSMichael Lange . sf       - The star forest communication context describing the migration pattern
149915078cd4SMichael Lange 
150015078cd4SMichael Lange   Output Parameter:
150115078cd4SMichael Lange - targetDM - The target DMPlex object
150215078cd4SMichael Lange 
1503b9f40539SMichael Lange   Level: intermediate
150415078cd4SMichael Lange 
150515078cd4SMichael Lange .seealso: DMPlexDistribute(), DMPlexDistributeOverlap()
150615078cd4SMichael Lange @*/
1507b9f40539SMichael Lange PetscErrorCode DMPlexMigrate(DM dm, PetscSF sf, DM targetDM)
150815078cd4SMichael Lange {
1509b9f40539SMichael Lange   MPI_Comm               comm;
1510cc1750acSStefano Zampini   PetscInt               dim, cdim, nroots;
1511b9f40539SMichael Lange   PetscSF                sfPoint;
151215078cd4SMichael Lange   ISLocalToGlobalMapping ltogMigration;
1513ac04eaf7SToby Isaac   ISLocalToGlobalMapping ltogOriginal = NULL;
1514b9f40539SMichael Lange   PetscBool              flg;
151515078cd4SMichael Lange   PetscErrorCode         ierr;
151615078cd4SMichael Lange 
151715078cd4SMichael Lange   PetscFunctionBegin;
151815078cd4SMichael Lange   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
15191b858b30SMichael Lange   ierr = PetscLogEventBegin(DMPLEX_Migrate, dm, 0, 0, 0);CHKERRQ(ierr);
1520b9f40539SMichael Lange   ierr = PetscObjectGetComm((PetscObject) dm, &comm);CHKERRQ(ierr);
152115078cd4SMichael Lange   ierr = DMGetDimension(dm, &dim);CHKERRQ(ierr);
152215078cd4SMichael Lange   ierr = DMSetDimension(targetDM, dim);CHKERRQ(ierr);
1523cc1750acSStefano Zampini   ierr = DMGetCoordinateDim(dm, &cdim);CHKERRQ(ierr);
1524cc1750acSStefano Zampini   ierr = DMSetCoordinateDim(targetDM, cdim);CHKERRQ(ierr);
152515078cd4SMichael Lange 
1526bfb0467fSMichael Lange   /* Check for a one-to-all distribution pattern */
1527b9f40539SMichael Lange   ierr = DMGetPointSF(dm, &sfPoint);CHKERRQ(ierr);
1528b9f40539SMichael Lange   ierr = PetscSFGetGraph(sfPoint, &nroots, NULL, NULL, NULL);CHKERRQ(ierr);
1529bfb0467fSMichael Lange   if (nroots >= 0) {
1530b9f40539SMichael Lange     IS        isOriginal;
1531ac04eaf7SToby Isaac     PetscInt  n, size, nleaves;
1532ac04eaf7SToby Isaac     PetscInt  *numbering_orig, *numbering_new;
1533367003a6SStefano Zampini 
1534b9f40539SMichael Lange     /* Get the original point numbering */
1535b9f40539SMichael Lange     ierr = DMPlexCreatePointNumbering(dm, &isOriginal);CHKERRQ(ierr);
1536b9f40539SMichael Lange     ierr = ISLocalToGlobalMappingCreateIS(isOriginal, &ltogOriginal);CHKERRQ(ierr);
1537b9f40539SMichael Lange     ierr = ISLocalToGlobalMappingGetSize(ltogOriginal, &size);CHKERRQ(ierr);
1538b9f40539SMichael Lange     ierr = ISLocalToGlobalMappingGetBlockIndices(ltogOriginal, (const PetscInt**)&numbering_orig);CHKERRQ(ierr);
1539b9f40539SMichael Lange     /* Convert to positive global numbers */
1540b9f40539SMichael Lange     for (n=0; n<size; n++) {if (numbering_orig[n] < 0) numbering_orig[n] = -(numbering_orig[n]+1);}
1541b9f40539SMichael Lange     /* Derive the new local-to-global mapping from the old one */
1542b9f40539SMichael Lange     ierr = PetscSFGetGraph(sf, NULL, &nleaves, NULL, NULL);CHKERRQ(ierr);
1543b9f40539SMichael Lange     ierr = PetscMalloc1(nleaves, &numbering_new);CHKERRQ(ierr);
1544ad227feaSJunchao Zhang     ierr = PetscSFBcastBegin(sf, MPIU_INT, numbering_orig, numbering_new,MPI_REPLACE);CHKERRQ(ierr);
1545ad227feaSJunchao Zhang     ierr = PetscSFBcastEnd(sf, MPIU_INT, numbering_orig, numbering_new,MPI_REPLACE);CHKERRQ(ierr);
15466e0288c8SStefano Zampini     ierr = ISLocalToGlobalMappingCreate(comm, 1, nleaves, numbering_new, PETSC_OWN_POINTER, &ltogMigration);CHKERRQ(ierr);
1547b9f40539SMichael Lange     ierr = ISLocalToGlobalMappingRestoreIndices(ltogOriginal, (const PetscInt**)&numbering_orig);CHKERRQ(ierr);
1548b9f40539SMichael Lange     ierr = ISDestroy(&isOriginal);CHKERRQ(ierr);
154915078cd4SMichael Lange   } else {
1550bfb0467fSMichael Lange     /* One-to-all distribution pattern: We can derive LToG from SF */
155115078cd4SMichael Lange     ierr = ISLocalToGlobalMappingCreateSF(sf, 0, &ltogMigration);CHKERRQ(ierr);
155215078cd4SMichael Lange   }
1553c5929fdfSBarry Smith   ierr = PetscOptionsHasName(((PetscObject) dm)->options,((PetscObject) dm)->prefix, "-partition_view", &flg);CHKERRQ(ierr);
1554b9f40539SMichael Lange   if (flg) {
1555b9f40539SMichael Lange     ierr = PetscPrintf(comm, "Point renumbering for DM migration:\n");CHKERRQ(ierr);
1556b9f40539SMichael Lange     ierr = ISLocalToGlobalMappingView(ltogMigration, NULL);CHKERRQ(ierr);
1557b9f40539SMichael Lange   }
155815078cd4SMichael Lange   /* Migrate DM data to target DM */
1559ac04eaf7SToby Isaac   ierr = DMPlexDistributeCones(dm, sf, ltogOriginal, ltogMigration, targetDM);CHKERRQ(ierr);
156015078cd4SMichael Lange   ierr = DMPlexDistributeLabels(dm, sf, targetDM);CHKERRQ(ierr);
15610dc1530dSSander Arens   ierr = DMPlexDistributeCoordinates(dm, sf, targetDM);CHKERRQ(ierr);
156208633170SToby Isaac   ierr = DMPlexDistributeSetupTree(dm, sf, ltogOriginal, ltogMigration, targetDM);CHKERRQ(ierr);
1563ac04eaf7SToby Isaac   ierr = ISLocalToGlobalMappingDestroy(&ltogOriginal);CHKERRQ(ierr);
1564302440fdSBarry Smith   ierr = ISLocalToGlobalMappingDestroy(&ltogMigration);CHKERRQ(ierr);
15651b858b30SMichael Lange   ierr = PetscLogEventEnd(DMPLEX_Migrate, dm, 0, 0, 0);CHKERRQ(ierr);
156615078cd4SMichael Lange   PetscFunctionReturn(0);
156715078cd4SMichael Lange }
156815078cd4SMichael Lange 
15693b8f15a2SMatthew G. Knepley /*@C
157070034214SMatthew G. Knepley   DMPlexDistribute - Distributes the mesh and any associated sections.
157170034214SMatthew G. Knepley 
1572d083f849SBarry Smith   Collective on dm
157370034214SMatthew G. Knepley 
1574064ec1f3Sprj-   Input Parameters:
157570034214SMatthew G. Knepley + dm  - The original DMPlex object
157670034214SMatthew G. Knepley - overlap - The overlap of partitions, 0 is the default
157770034214SMatthew G. Knepley 
1578064ec1f3Sprj-   Output Parameters:
1579f4ae5380SJed Brown + sf - The PetscSF used for point distribution, or NULL if not needed
1580f4ae5380SJed Brown - dmParallel - The distributed DMPlex object
158170034214SMatthew G. Knepley 
1582f4ae5380SJed Brown   Note: If the mesh was not distributed, the output dmParallel will be NULL.
158370034214SMatthew G. Knepley 
1584b0441da4SMatthew G. Knepley   The user can control the definition of adjacency for the mesh using DMSetAdjacency(). They should choose the combination appropriate for the function
158570034214SMatthew G. Knepley   representation on the mesh.
158670034214SMatthew G. Knepley 
158770034214SMatthew G. Knepley   Level: intermediate
158870034214SMatthew G. Knepley 
1589cb54e036SVaclav Hapla .seealso: DMPlexCreate(), DMSetAdjacency(), DMPlexGetOverlap()
159070034214SMatthew G. Knepley @*/
159180cf41d5SMatthew G. Knepley PetscErrorCode DMPlexDistribute(DM dm, PetscInt overlap, PetscSF *sf, DM *dmParallel)
159270034214SMatthew G. Knepley {
159370034214SMatthew G. Knepley   MPI_Comm               comm;
159415078cd4SMichael Lange   PetscPartitioner       partitioner;
1595f8987ae8SMichael Lange   IS                     cellPart;
1596f8987ae8SMichael Lange   PetscSection           cellPartSection;
1597cf86098cSMatthew G. Knepley   DM                     dmCoord;
1598f8987ae8SMichael Lange   DMLabel                lblPartition, lblMigration;
1599874ddda9SLisandro Dalcin   PetscSF                sfMigration, sfStratified, sfPoint;
160098ba2d7fSLawrence Mitchell   PetscBool              flg, balance;
1601874ddda9SLisandro Dalcin   PetscMPIInt            rank, size;
160270034214SMatthew G. Knepley   PetscErrorCode         ierr;
160370034214SMatthew G. Knepley 
160470034214SMatthew G. Knepley   PetscFunctionBegin;
160570034214SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
1606d5c515a1SMatthew G. Knepley   PetscValidLogicalCollectiveInt(dm, overlap, 2);
1607d5c515a1SMatthew G. Knepley   if (sf) PetscValidPointer(sf,3);
1608d5c515a1SMatthew G. Knepley   PetscValidPointer(dmParallel,4);
160970034214SMatthew G. Knepley 
16100c86c063SLisandro Dalcin   if (sf) *sf = NULL;
16110c86c063SLisandro Dalcin   *dmParallel = NULL;
161270034214SMatthew G. Knepley   ierr = PetscObjectGetComm((PetscObject)dm,&comm);CHKERRQ(ierr);
1613ffc4695bSBarry Smith   ierr = MPI_Comm_rank(comm, &rank);CHKERRMPI(ierr);
1614ffc4695bSBarry Smith   ierr = MPI_Comm_size(comm, &size);CHKERRMPI(ierr);
16150c86c063SLisandro Dalcin   if (size == 1) PetscFunctionReturn(0);
161670034214SMatthew G. Knepley 
16170c86c063SLisandro Dalcin   ierr = PetscLogEventBegin(DMPLEX_Distribute,dm,0,0,0);CHKERRQ(ierr);
161815078cd4SMichael Lange   /* Create cell partition */
161967eb269bSLisandro Dalcin   ierr = PetscLogEventBegin(DMPLEX_Partition,dm,0,0,0);CHKERRQ(ierr);
162077623264SMatthew G. Knepley   ierr = PetscSectionCreate(comm, &cellPartSection);CHKERRQ(ierr);
162115078cd4SMichael Lange   ierr = DMPlexGetPartitioner(dm, &partitioner);CHKERRQ(ierr);
16223c41b853SStefano Zampini   ierr = PetscPartitionerDMPlexPartition(partitioner, dm, NULL, cellPartSection, &cellPart);CHKERRQ(ierr);
162330b0ce1bSStefano Zampini   ierr = PetscLogEventBegin(DMPLEX_PartSelf,dm,0,0,0);CHKERRQ(ierr);
1624f8987ae8SMichael Lange   {
1625f8987ae8SMichael Lange     /* Convert partition to DMLabel */
1626825f8a23SLisandro Dalcin     IS             is;
1627825f8a23SLisandro Dalcin     PetscHSetI     ht;
1628f8987ae8SMichael Lange     const PetscInt *points;
16298e330a33SStefano Zampini     PetscInt       *iranks;
16308e330a33SStefano Zampini     PetscInt       pStart, pEnd, proc, npoints, poff = 0, nranks;
1631825f8a23SLisandro Dalcin 
1632d67d17b1SMatthew G. Knepley     ierr = DMLabelCreate(PETSC_COMM_SELF, "Point Partition", &lblPartition);CHKERRQ(ierr);
1633825f8a23SLisandro Dalcin     /* Preallocate strata */
1634825f8a23SLisandro Dalcin     ierr = PetscHSetICreate(&ht);CHKERRQ(ierr);
1635825f8a23SLisandro Dalcin     ierr = PetscSectionGetChart(cellPartSection, &pStart, &pEnd);CHKERRQ(ierr);
1636825f8a23SLisandro Dalcin     for (proc = pStart; proc < pEnd; proc++) {
1637825f8a23SLisandro Dalcin       ierr = PetscSectionGetDof(cellPartSection, proc, &npoints);CHKERRQ(ierr);
1638825f8a23SLisandro Dalcin       if (npoints) {ierr = PetscHSetIAdd(ht, proc);CHKERRQ(ierr);}
1639825f8a23SLisandro Dalcin     }
1640825f8a23SLisandro Dalcin     ierr = PetscHSetIGetSize(ht, &nranks);CHKERRQ(ierr);
1641825f8a23SLisandro Dalcin     ierr = PetscMalloc1(nranks, &iranks);CHKERRQ(ierr);
1642825f8a23SLisandro Dalcin     ierr = PetscHSetIGetElems(ht, &poff, iranks);CHKERRQ(ierr);
1643825f8a23SLisandro Dalcin     ierr = PetscHSetIDestroy(&ht);CHKERRQ(ierr);
1644825f8a23SLisandro Dalcin     ierr = DMLabelAddStrata(lblPartition, nranks, iranks);CHKERRQ(ierr);
1645825f8a23SLisandro Dalcin     ierr = PetscFree(iranks);CHKERRQ(ierr);
1646825f8a23SLisandro Dalcin     /* Inline DMPlexPartitionLabelClosure() */
1647f8987ae8SMichael Lange     ierr = ISGetIndices(cellPart, &points);CHKERRQ(ierr);
1648f8987ae8SMichael Lange     ierr = PetscSectionGetChart(cellPartSection, &pStart, &pEnd);CHKERRQ(ierr);
1649f8987ae8SMichael Lange     for (proc = pStart; proc < pEnd; proc++) {
1650f8987ae8SMichael Lange       ierr = PetscSectionGetDof(cellPartSection, proc, &npoints);CHKERRQ(ierr);
1651825f8a23SLisandro Dalcin       if (!npoints) continue;
1652825f8a23SLisandro Dalcin       ierr = PetscSectionGetOffset(cellPartSection, proc, &poff);CHKERRQ(ierr);
16538e330a33SStefano Zampini       ierr = DMPlexClosurePoints_Private(dm, npoints, points+poff, &is);CHKERRQ(ierr);
1654825f8a23SLisandro Dalcin       ierr = DMLabelSetStratumIS(lblPartition, proc, is);CHKERRQ(ierr);
1655825f8a23SLisandro Dalcin       ierr = ISDestroy(&is);CHKERRQ(ierr);
1656f8987ae8SMichael Lange     }
1657f8987ae8SMichael Lange     ierr = ISRestoreIndices(cellPart, &points);CHKERRQ(ierr);
1658f8987ae8SMichael Lange   }
165930b0ce1bSStefano Zampini   ierr = PetscLogEventEnd(DMPLEX_PartSelf,dm,0,0,0);CHKERRQ(ierr);
16606e203dd9SStefano Zampini 
1661d67d17b1SMatthew G. Knepley   ierr = DMLabelCreate(PETSC_COMM_SELF, "Point migration", &lblMigration);CHKERRQ(ierr);
1662874ddda9SLisandro Dalcin   ierr = DMPlexPartitionLabelInvert(dm, lblPartition, NULL, lblMigration);CHKERRQ(ierr);
1663302440fdSBarry Smith   ierr = DMPlexPartitionLabelCreateSF(dm, lblMigration, &sfMigration);CHKERRQ(ierr);
166443f7d02bSMichael Lange   ierr = DMPlexStratifyMigrationSF(dm, sfMigration, &sfStratified);CHKERRQ(ierr);
166543f7d02bSMichael Lange   ierr = PetscSFDestroy(&sfMigration);CHKERRQ(ierr);
166643f7d02bSMichael Lange   sfMigration = sfStratified;
166730b0ce1bSStefano Zampini   ierr = PetscSFSetUp(sfMigration);CHKERRQ(ierr);
166867eb269bSLisandro Dalcin   ierr = PetscLogEventEnd(DMPLEX_Partition,dm,0,0,0);CHKERRQ(ierr);
1669c5929fdfSBarry Smith   ierr = PetscOptionsHasName(((PetscObject) dm)->options,((PetscObject) dm)->prefix, "-partition_view", &flg);CHKERRQ(ierr);
167070034214SMatthew G. Knepley   if (flg) {
1671a8c5bd36SStefano Zampini     ierr = DMLabelView(lblPartition, PETSC_VIEWER_STDOUT_(comm));CHKERRQ(ierr);
1672a8c5bd36SStefano Zampini     ierr = PetscSFView(sfMigration, PETSC_VIEWER_STDOUT_(comm));CHKERRQ(ierr);
167370034214SMatthew G. Knepley   }
1674f8987ae8SMichael Lange 
167515078cd4SMichael Lange   /* Create non-overlapping parallel DM and migrate internal data */
167670034214SMatthew G. Knepley   ierr = DMPlexCreate(comm, dmParallel);CHKERRQ(ierr);
167770034214SMatthew G. Knepley   ierr = PetscObjectSetName((PetscObject) *dmParallel, "Parallel Mesh");CHKERRQ(ierr);
1678b9f40539SMichael Lange   ierr = DMPlexMigrate(dm, sfMigration, *dmParallel);CHKERRQ(ierr);
167970034214SMatthew G. Knepley 
1680a157612eSMichael Lange   /* Build the point SF without overlap */
168198ba2d7fSLawrence Mitchell   ierr = DMPlexGetPartitionBalance(dm, &balance);CHKERRQ(ierr);
168298ba2d7fSLawrence Mitchell   ierr = DMPlexSetPartitionBalance(*dmParallel, balance);CHKERRQ(ierr);
16831627f6ccSMichael Lange   ierr = DMPlexCreatePointSF(*dmParallel, sfMigration, PETSC_TRUE, &sfPoint);CHKERRQ(ierr);
1684f5bf2dbfSMichael Lange   ierr = DMSetPointSF(*dmParallel, sfPoint);CHKERRQ(ierr);
1685cf86098cSMatthew G. Knepley   ierr = DMGetCoordinateDM(*dmParallel, &dmCoord);CHKERRQ(ierr);
1686cf86098cSMatthew G. Knepley   if (dmCoord) {ierr = DMSetPointSF(dmCoord, sfPoint);CHKERRQ(ierr);}
1687a8c5bd36SStefano Zampini   if (flg) {ierr = PetscSFView(sfPoint, NULL);CHKERRQ(ierr);}
168870034214SMatthew G. Knepley 
1689a157612eSMichael Lange   if (overlap > 0) {
169015078cd4SMichael Lange     DM                 dmOverlap;
169157f290daSMatthew G. Knepley     PetscInt           nroots, nleaves, noldleaves, l;
169257f290daSMatthew G. Knepley     const PetscInt    *oldLeaves;
169357f290daSMatthew G. Knepley     PetscSFNode       *newRemote, *permRemote;
169415078cd4SMichael Lange     const PetscSFNode *oldRemote;
169515078cd4SMichael Lange     PetscSF            sfOverlap, sfOverlapPoint;
1696524e35f8SStefano Zampini 
1697a157612eSMichael Lange     /* Add the partition overlap to the distributed DM */
1698b9f40539SMichael Lange     ierr = DMPlexDistributeOverlap(*dmParallel, overlap, &sfOverlap, &dmOverlap);CHKERRQ(ierr);
1699a157612eSMichael Lange     ierr = DMDestroy(dmParallel);CHKERRQ(ierr);
1700a157612eSMichael Lange     *dmParallel = dmOverlap;
1701c389ea9fSToby Isaac     if (flg) {
17023d822a50SMichael Lange       ierr = PetscPrintf(comm, "Overlap Migration SF:\n");CHKERRQ(ierr);
170315078cd4SMichael Lange       ierr = PetscSFView(sfOverlap, NULL);CHKERRQ(ierr);
1704c389ea9fSToby Isaac     }
170543331d4aSMichael Lange 
1706f8987ae8SMichael Lange     /* Re-map the migration SF to establish the full migration pattern */
170757f290daSMatthew G. Knepley     ierr = PetscSFGetGraph(sfMigration, &nroots, &noldleaves, &oldLeaves, &oldRemote);CHKERRQ(ierr);
170815078cd4SMichael Lange     ierr = PetscSFGetGraph(sfOverlap, NULL, &nleaves, NULL, NULL);CHKERRQ(ierr);
170943331d4aSMichael Lange     ierr = PetscMalloc1(nleaves, &newRemote);CHKERRQ(ierr);
171057f290daSMatthew G. Knepley     /* oldRemote: original root point mapping to original leaf point
171157f290daSMatthew G. Knepley        newRemote: original leaf point mapping to overlapped leaf point */
171257f290daSMatthew G. Knepley     if (oldLeaves) {
171373e69a6aSMatthew G. Knepley       /* After stratification, the migration remotes may not be in root (canonical) order, so we reorder using the leaf numbering */
171473e69a6aSMatthew G. Knepley       ierr = PetscMalloc1(noldleaves, &permRemote);CHKERRQ(ierr);
171557f290daSMatthew G. Knepley       for (l = 0; l < noldleaves; ++l) permRemote[oldLeaves[l]] = oldRemote[l];
171657f290daSMatthew G. Knepley       oldRemote = permRemote;
171757f290daSMatthew G. Knepley     }
1718ad227feaSJunchao Zhang     ierr = PetscSFBcastBegin(sfOverlap, MPIU_2INT, oldRemote, newRemote,MPI_REPLACE);CHKERRQ(ierr);
1719ad227feaSJunchao Zhang     ierr = PetscSFBcastEnd(sfOverlap, MPIU_2INT, oldRemote, newRemote,MPI_REPLACE);CHKERRQ(ierr);
172057f290daSMatthew G. Knepley     if (oldLeaves) {ierr = PetscFree(oldRemote);CHKERRQ(ierr);}
172115078cd4SMichael Lange     ierr = PetscSFCreate(comm, &sfOverlapPoint);CHKERRQ(ierr);
172215078cd4SMichael Lange     ierr = PetscSFSetGraph(sfOverlapPoint, nroots, nleaves, NULL, PETSC_OWN_POINTER, newRemote, PETSC_OWN_POINTER);CHKERRQ(ierr);
172315078cd4SMichael Lange     ierr = PetscSFDestroy(&sfOverlap);CHKERRQ(ierr);
1724f8987ae8SMichael Lange     ierr = PetscSFDestroy(&sfMigration);CHKERRQ(ierr);
172515078cd4SMichael Lange     sfMigration = sfOverlapPoint;
1726c389ea9fSToby Isaac   }
1727bf5244c7SMatthew G. Knepley   /* Cleanup Partition */
1728f8987ae8SMichael Lange   ierr = DMLabelDestroy(&lblPartition);CHKERRQ(ierr);
1729f8987ae8SMichael Lange   ierr = DMLabelDestroy(&lblMigration);CHKERRQ(ierr);
17304eca1733SMichael Lange   ierr = PetscSectionDestroy(&cellPartSection);CHKERRQ(ierr);
17314eca1733SMichael Lange   ierr = ISDestroy(&cellPart);CHKERRQ(ierr);
1732721cbd76SMatthew G. Knepley   /* Copy BC */
1733a6ba4734SToby Isaac   ierr = DMCopyBoundary(dm, *dmParallel);CHKERRQ(ierr);
173466fe0bfeSMatthew G. Knepley   /* Create sfNatural */
173566fe0bfeSMatthew G. Knepley   if (dm->useNatural) {
173666fe0bfeSMatthew G. Knepley     PetscSection section;
173766fe0bfeSMatthew G. Knepley 
173892fd8e1eSJed Brown     ierr = DMGetLocalSection(dm, &section);CHKERRQ(ierr);
17390c1f158bSMatthew G. Knepley     ierr = DMPlexCreateGlobalToNaturalSF(*dmParallel, section, sfMigration, &(*dmParallel)->sfNatural);CHKERRQ(ierr);
17400e663481SBlaise Bourdin     ierr = DMSetUseNatural(*dmParallel, PETSC_TRUE);CHKERRQ(ierr);
174166fe0bfeSMatthew G. Knepley   }
1742721cbd76SMatthew G. Knepley   /* Cleanup */
1743f8987ae8SMichael Lange   if (sf) {*sf = sfMigration;}
1744f8987ae8SMichael Lange   else    {ierr = PetscSFDestroy(&sfMigration);CHKERRQ(ierr);}
1745f5bf2dbfSMichael Lange   ierr = PetscSFDestroy(&sfPoint);CHKERRQ(ierr);
174670034214SMatthew G. Knepley   ierr = PetscLogEventEnd(DMPLEX_Distribute,dm,0,0,0);CHKERRQ(ierr);
174770034214SMatthew G. Knepley   PetscFunctionReturn(0);
174870034214SMatthew G. Knepley }
1749a157612eSMichael Lange 
1750a157612eSMichael Lange /*@C
175124cc2ca5SMatthew G. Knepley   DMPlexDistributeOverlap - Add partition overlap to a distributed non-overlapping DM.
1752a157612eSMichael Lange 
1753d083f849SBarry Smith   Collective on dm
1754a157612eSMichael Lange 
1755064ec1f3Sprj-   Input Parameters:
1756064ec1f3Sprj- + dm  - The non-overlapping distributed DMPlex object
175757fe9a49SVaclav Hapla - overlap - The overlap of partitions (the same on all ranks)
1758a157612eSMichael Lange 
1759064ec1f3Sprj-   Output Parameters:
1760a157612eSMichael Lange + sf - The PetscSF used for point distribution
1761a157612eSMichael Lange - dmOverlap - The overlapping distributed DMPlex object, or NULL
1762a157612eSMichael Lange 
1763dccdeccaSVaclav Hapla   Notes:
1764dccdeccaSVaclav Hapla   If the mesh was not distributed, the return value is NULL.
1765a157612eSMichael Lange 
1766b0441da4SMatthew G. Knepley   The user can control the definition of adjacency for the mesh using DMSetAdjacency(). They should choose the combination appropriate for the function
1767a157612eSMichael Lange   representation on the mesh.
1768a157612eSMichael Lange 
1769dccdeccaSVaclav Hapla   Level: advanced
1770a157612eSMichael Lange 
1771cb54e036SVaclav Hapla .seealso: DMPlexCreate(), DMSetAdjacency(), DMPlexDistribute(), DMPlexCreateOverlapLabel(), DMPlexGetOverlap()
1772a157612eSMichael Lange @*/
1773b9f40539SMichael Lange PetscErrorCode DMPlexDistributeOverlap(DM dm, PetscInt overlap, PetscSF *sf, DM *dmOverlap)
1774a157612eSMichael Lange {
1775a157612eSMichael Lange   MPI_Comm               comm;
17763567eaeeSMatthew G. Knepley   PetscMPIInt            size, rank;
1777a157612eSMichael Lange   PetscSection           rootSection, leafSection;
1778a157612eSMichael Lange   IS                     rootrank, leafrank;
1779cf86098cSMatthew G. Knepley   DM                     dmCoord;
1780a9f1d5b2SMichael Lange   DMLabel                lblOverlap;
1781f5bf2dbfSMichael Lange   PetscSF                sfOverlap, sfStratified, sfPoint;
1782a157612eSMichael Lange   PetscErrorCode         ierr;
1783a157612eSMichael Lange 
1784a157612eSMichael Lange   PetscFunctionBegin;
1785a157612eSMichael Lange   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
178657fe9a49SVaclav Hapla   PetscValidLogicalCollectiveInt(dm, overlap, 2);
1787a157612eSMichael Lange   if (sf) PetscValidPointer(sf, 3);
1788a157612eSMichael Lange   PetscValidPointer(dmOverlap, 4);
1789a157612eSMichael Lange 
17900c86c063SLisandro Dalcin   if (sf) *sf = NULL;
17910c86c063SLisandro Dalcin   *dmOverlap  = NULL;
1792a157612eSMichael Lange   ierr = PetscObjectGetComm((PetscObject)dm,&comm);CHKERRQ(ierr);
1793ffc4695bSBarry Smith   ierr = MPI_Comm_size(comm, &size);CHKERRMPI(ierr);
1794ffc4695bSBarry Smith   ierr = MPI_Comm_rank(comm, &rank);CHKERRMPI(ierr);
17950c86c063SLisandro Dalcin   if (size == 1) PetscFunctionReturn(0);
1796a157612eSMichael Lange 
17970c86c063SLisandro Dalcin   ierr = PetscLogEventBegin(DMPLEX_DistributeOverlap, dm, 0, 0, 0);CHKERRQ(ierr);
1798a157612eSMichael Lange   /* Compute point overlap with neighbouring processes on the distributed DM */
179967eb269bSLisandro Dalcin   ierr = PetscLogEventBegin(DMPLEX_Partition,dm,0,0,0);CHKERRQ(ierr);
1800a157612eSMichael Lange   ierr = PetscSectionCreate(comm, &rootSection);CHKERRQ(ierr);
1801a157612eSMichael Lange   ierr = PetscSectionCreate(comm, &leafSection);CHKERRQ(ierr);
1802a157612eSMichael Lange   ierr = DMPlexDistributeOwnership(dm, rootSection, &rootrank, leafSection, &leafrank);CHKERRQ(ierr);
1803dccdeccaSVaclav Hapla   ierr = DMPlexCreateOverlapLabel(dm, overlap, rootSection, rootrank, leafSection, leafrank, &lblOverlap);CHKERRQ(ierr);
1804a9f1d5b2SMichael Lange   /* Convert overlap label to stratified migration SF */
1805a9f1d5b2SMichael Lange   ierr = DMPlexPartitionLabelCreateSF(dm, lblOverlap, &sfOverlap);CHKERRQ(ierr);
1806a9f1d5b2SMichael Lange   ierr = DMPlexStratifyMigrationSF(dm, sfOverlap, &sfStratified);CHKERRQ(ierr);
1807a9f1d5b2SMichael Lange   ierr = PetscSFDestroy(&sfOverlap);CHKERRQ(ierr);
1808a9f1d5b2SMichael Lange   sfOverlap = sfStratified;
1809a9f1d5b2SMichael Lange   ierr = PetscObjectSetName((PetscObject) sfOverlap, "Overlap SF");CHKERRQ(ierr);
1810a9f1d5b2SMichael Lange   ierr = PetscSFSetFromOptions(sfOverlap);CHKERRQ(ierr);
1811a9f1d5b2SMichael Lange 
181215fff7beSMatthew G. Knepley   ierr = PetscSectionDestroy(&rootSection);CHKERRQ(ierr);
181315fff7beSMatthew G. Knepley   ierr = PetscSectionDestroy(&leafSection);CHKERRQ(ierr);
181415fff7beSMatthew G. Knepley   ierr = ISDestroy(&rootrank);CHKERRQ(ierr);
181515fff7beSMatthew G. Knepley   ierr = ISDestroy(&leafrank);CHKERRQ(ierr);
181667eb269bSLisandro Dalcin   ierr = PetscLogEventEnd(DMPLEX_Partition,dm,0,0,0);CHKERRQ(ierr);
1817a157612eSMichael Lange 
1818a157612eSMichael Lange   /* Build the overlapping DM */
1819a157612eSMichael Lange   ierr = DMPlexCreate(comm, dmOverlap);CHKERRQ(ierr);
1820a157612eSMichael Lange   ierr = PetscObjectSetName((PetscObject) *dmOverlap, "Parallel Mesh");CHKERRQ(ierr);
1821a9f1d5b2SMichael Lange   ierr = DMPlexMigrate(dm, sfOverlap, *dmOverlap);CHKERRQ(ierr);
1822cb54e036SVaclav Hapla   /* Store the overlap in the new DM */
1823cb54e036SVaclav Hapla   ((DM_Plex*)(*dmOverlap)->data)->overlap = overlap + ((DM_Plex*)dm->data)->overlap;
1824f5bf2dbfSMichael Lange   /* Build the new point SF */
18251627f6ccSMichael Lange   ierr = DMPlexCreatePointSF(*dmOverlap, sfOverlap, PETSC_FALSE, &sfPoint);CHKERRQ(ierr);
1826f5bf2dbfSMichael Lange   ierr = DMSetPointSF(*dmOverlap, sfPoint);CHKERRQ(ierr);
1827cf86098cSMatthew G. Knepley   ierr = DMGetCoordinateDM(*dmOverlap, &dmCoord);CHKERRQ(ierr);
1828cf86098cSMatthew G. Knepley   if (dmCoord) {ierr = DMSetPointSF(dmCoord, sfPoint);CHKERRQ(ierr);}
1829f5bf2dbfSMichael Lange   ierr = PetscSFDestroy(&sfPoint);CHKERRQ(ierr);
1830a157612eSMichael Lange   /* Cleanup overlap partition */
1831a9f1d5b2SMichael Lange   ierr = DMLabelDestroy(&lblOverlap);CHKERRQ(ierr);
1832a9f1d5b2SMichael Lange   if (sf) *sf = sfOverlap;
1833a9f1d5b2SMichael Lange   else    {ierr = PetscSFDestroy(&sfOverlap);CHKERRQ(ierr);}
18341b858b30SMichael Lange   ierr = PetscLogEventEnd(DMPLEX_DistributeOverlap, dm, 0, 0, 0);CHKERRQ(ierr);
1835a157612eSMichael Lange   PetscFunctionReturn(0);
1836a157612eSMichael Lange }
18376462276dSToby Isaac 
1838cb54e036SVaclav Hapla PetscErrorCode DMPlexGetOverlap_Plex(DM dm, PetscInt *overlap)
1839cb54e036SVaclav Hapla {
1840cb54e036SVaclav Hapla   DM_Plex        *mesh  = (DM_Plex*) dm->data;
1841cb54e036SVaclav Hapla 
1842cb54e036SVaclav Hapla   PetscFunctionBegin;
1843cb54e036SVaclav Hapla   *overlap = mesh->overlap;
1844cb54e036SVaclav Hapla   PetscFunctionReturn(0);
1845cb54e036SVaclav Hapla }
1846cb54e036SVaclav Hapla 
1847cb54e036SVaclav Hapla /*@
1848cb54e036SVaclav Hapla   DMPlexGetOverlap - Get the DMPlex partition overlap.
1849cb54e036SVaclav Hapla 
1850cb54e036SVaclav Hapla   Not collective
1851cb54e036SVaclav Hapla 
1852cb54e036SVaclav Hapla   Input Parameter:
1853cb54e036SVaclav Hapla . dm - The DM
1854cb54e036SVaclav Hapla 
1855064ec1f3Sprj-   Output Parameter:
1856cb54e036SVaclav Hapla . overlap - The overlap of this DM
1857cb54e036SVaclav Hapla 
1858cb54e036SVaclav Hapla   Level: intermediate
1859cb54e036SVaclav Hapla 
1860cb54e036SVaclav Hapla .seealso: DMPlexDistribute(), DMPlexDistributeOverlap(), DMPlexCreateOverlapLabel()
1861cb54e036SVaclav Hapla @*/
1862cb54e036SVaclav Hapla PetscErrorCode DMPlexGetOverlap(DM dm, PetscInt *overlap)
1863cb54e036SVaclav Hapla {
1864cb54e036SVaclav Hapla   PetscErrorCode     ierr;
1865cb54e036SVaclav Hapla 
1866cb54e036SVaclav Hapla   PetscFunctionBegin;
1867cb54e036SVaclav Hapla   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
1868cb54e036SVaclav Hapla   ierr = PetscUseMethod(dm,"DMPlexGetOverlap_C",(DM,PetscInt*),(dm,overlap));CHKERRQ(ierr);
1869cb54e036SVaclav Hapla   PetscFunctionReturn(0);
1870cb54e036SVaclav Hapla }
1871cb54e036SVaclav Hapla 
1872cb54e036SVaclav Hapla 
18736462276dSToby Isaac /*@C
18746462276dSToby Isaac   DMPlexGetGatherDM - Get a copy of the DMPlex that gathers all points on the
18756462276dSToby Isaac   root process of the original's communicator.
18766462276dSToby Isaac 
1877d083f849SBarry Smith   Collective on dm
187883655b49SVáclav Hapla 
1879064ec1f3Sprj-   Input Parameter:
18806462276dSToby Isaac . dm - the original DMPlex object
18816462276dSToby Isaac 
18826462276dSToby Isaac   Output Parameters:
1883a13df41bSStefano Zampini + sf - the PetscSF used for point distribution (optional)
1884a13df41bSStefano Zampini - gatherMesh - the gathered DM object, or NULL
18856462276dSToby Isaac 
18866462276dSToby Isaac   Level: intermediate
18876462276dSToby Isaac 
18886462276dSToby Isaac .seealso: DMPlexDistribute(), DMPlexGetRedundantDM()
18896462276dSToby Isaac @*/
1890a13df41bSStefano Zampini PetscErrorCode DMPlexGetGatherDM(DM dm, PetscSF *sf, DM *gatherMesh)
18916462276dSToby Isaac {
18926462276dSToby Isaac   MPI_Comm       comm;
18936462276dSToby Isaac   PetscMPIInt    size;
18946462276dSToby Isaac   PetscPartitioner oldPart, gatherPart;
18956462276dSToby Isaac   PetscErrorCode ierr;
18966462276dSToby Isaac 
18976462276dSToby Isaac   PetscFunctionBegin;
18986462276dSToby Isaac   PetscValidHeaderSpecific(dm,DM_CLASSID,1);
18990c86c063SLisandro Dalcin   PetscValidPointer(gatherMesh,2);
19000c86c063SLisandro Dalcin   *gatherMesh = NULL;
1901a13df41bSStefano Zampini   if (sf) *sf = NULL;
19026462276dSToby Isaac   comm = PetscObjectComm((PetscObject)dm);
1903ffc4695bSBarry Smith   ierr = MPI_Comm_size(comm,&size);CHKERRMPI(ierr);
19046462276dSToby Isaac   if (size == 1) PetscFunctionReturn(0);
19056462276dSToby Isaac   ierr = DMPlexGetPartitioner(dm,&oldPart);CHKERRQ(ierr);
19066462276dSToby Isaac   ierr = PetscObjectReference((PetscObject)oldPart);CHKERRQ(ierr);
19076462276dSToby Isaac   ierr = PetscPartitionerCreate(comm,&gatherPart);CHKERRQ(ierr);
19086462276dSToby Isaac   ierr = PetscPartitionerSetType(gatherPart,PETSCPARTITIONERGATHER);CHKERRQ(ierr);
19096462276dSToby Isaac   ierr = DMPlexSetPartitioner(dm,gatherPart);CHKERRQ(ierr);
1910a13df41bSStefano Zampini   ierr = DMPlexDistribute(dm,0,sf,gatherMesh);CHKERRQ(ierr);
1911a13df41bSStefano Zampini 
19126462276dSToby Isaac   ierr = DMPlexSetPartitioner(dm,oldPart);CHKERRQ(ierr);
19136462276dSToby Isaac   ierr = PetscPartitionerDestroy(&gatherPart);CHKERRQ(ierr);
19146462276dSToby Isaac   ierr = PetscPartitionerDestroy(&oldPart);CHKERRQ(ierr);
19156462276dSToby Isaac   PetscFunctionReturn(0);
19166462276dSToby Isaac }
19176462276dSToby Isaac 
19186462276dSToby Isaac /*@C
19196462276dSToby Isaac   DMPlexGetRedundantDM - Get a copy of the DMPlex that is completely copied on each process.
19206462276dSToby Isaac 
1921d083f849SBarry Smith   Collective on dm
192283655b49SVáclav Hapla 
1923064ec1f3Sprj-   Input Parameter:
19246462276dSToby Isaac . dm - the original DMPlex object
19256462276dSToby Isaac 
19266462276dSToby Isaac   Output Parameters:
1927a13df41bSStefano Zampini + sf - the PetscSF used for point distribution (optional)
1928a13df41bSStefano Zampini - redundantMesh - the redundant DM object, or NULL
19296462276dSToby Isaac 
19306462276dSToby Isaac   Level: intermediate
19316462276dSToby Isaac 
19326462276dSToby Isaac .seealso: DMPlexDistribute(), DMPlexGetGatherDM()
19336462276dSToby Isaac @*/
1934a13df41bSStefano Zampini PetscErrorCode DMPlexGetRedundantDM(DM dm, PetscSF *sf, DM *redundantMesh)
19356462276dSToby Isaac {
19366462276dSToby Isaac   MPI_Comm       comm;
19376462276dSToby Isaac   PetscMPIInt    size, rank;
19386462276dSToby Isaac   PetscInt       pStart, pEnd, p;
19396462276dSToby Isaac   PetscInt       numPoints = -1;
1940a13df41bSStefano Zampini   PetscSF        migrationSF, sfPoint, gatherSF;
19416462276dSToby Isaac   DM             gatherDM, dmCoord;
19426462276dSToby Isaac   PetscSFNode    *points;
19436462276dSToby Isaac   PetscErrorCode ierr;
19446462276dSToby Isaac 
19456462276dSToby Isaac   PetscFunctionBegin;
19466462276dSToby Isaac   PetscValidHeaderSpecific(dm,DM_CLASSID,1);
19470c86c063SLisandro Dalcin   PetscValidPointer(redundantMesh,2);
19480c86c063SLisandro Dalcin   *redundantMesh = NULL;
19496462276dSToby Isaac   comm = PetscObjectComm((PetscObject)dm);
1950ffc4695bSBarry Smith   ierr = MPI_Comm_size(comm,&size);CHKERRMPI(ierr);
195168dbc166SMatthew G. Knepley   if (size == 1) {
195268dbc166SMatthew G. Knepley     ierr = PetscObjectReference((PetscObject) dm);CHKERRQ(ierr);
195368dbc166SMatthew G. Knepley     *redundantMesh = dm;
1954a13df41bSStefano Zampini     if (sf) *sf = NULL;
195568dbc166SMatthew G. Knepley     PetscFunctionReturn(0);
195668dbc166SMatthew G. Knepley   }
1957a13df41bSStefano Zampini   ierr = DMPlexGetGatherDM(dm,&gatherSF,&gatherDM);CHKERRQ(ierr);
19586462276dSToby Isaac   if (!gatherDM) PetscFunctionReturn(0);
1959ffc4695bSBarry Smith   ierr = MPI_Comm_rank(comm,&rank);CHKERRMPI(ierr);
19606462276dSToby Isaac   ierr = DMPlexGetChart(gatherDM,&pStart,&pEnd);CHKERRQ(ierr);
19616462276dSToby Isaac   numPoints = pEnd - pStart;
1962ffc4695bSBarry Smith   ierr = MPI_Bcast(&numPoints,1,MPIU_INT,0,comm);CHKERRMPI(ierr);
19636462276dSToby Isaac   ierr = PetscMalloc1(numPoints,&points);CHKERRQ(ierr);
19646462276dSToby Isaac   ierr = PetscSFCreate(comm,&migrationSF);CHKERRQ(ierr);
19656462276dSToby Isaac   for (p = 0; p < numPoints; p++) {
19666462276dSToby Isaac     points[p].index = p;
19676462276dSToby Isaac     points[p].rank  = 0;
19686462276dSToby Isaac   }
19696462276dSToby Isaac   ierr = PetscSFSetGraph(migrationSF,pEnd-pStart,numPoints,NULL,PETSC_OWN_POINTER,points,PETSC_OWN_POINTER);CHKERRQ(ierr);
19706462276dSToby Isaac   ierr = DMPlexCreate(comm, redundantMesh);CHKERRQ(ierr);
19716462276dSToby Isaac   ierr = PetscObjectSetName((PetscObject) *redundantMesh, "Redundant Mesh");CHKERRQ(ierr);
19726462276dSToby Isaac   ierr = DMPlexMigrate(gatherDM, migrationSF, *redundantMesh);CHKERRQ(ierr);
19736462276dSToby Isaac   ierr = DMPlexCreatePointSF(*redundantMesh, migrationSF, PETSC_FALSE, &sfPoint);CHKERRQ(ierr);
19746462276dSToby Isaac   ierr = DMSetPointSF(*redundantMesh, sfPoint);CHKERRQ(ierr);
19756462276dSToby Isaac   ierr = DMGetCoordinateDM(*redundantMesh, &dmCoord);CHKERRQ(ierr);
19766462276dSToby Isaac   if (dmCoord) {ierr = DMSetPointSF(dmCoord, sfPoint);CHKERRQ(ierr);}
19776462276dSToby Isaac   ierr = PetscSFDestroy(&sfPoint);CHKERRQ(ierr);
1978a13df41bSStefano Zampini   if (sf) {
1979a13df41bSStefano Zampini     PetscSF tsf;
1980a13df41bSStefano Zampini 
1981a13df41bSStefano Zampini     ierr = PetscSFCompose(gatherSF,migrationSF,&tsf);CHKERRQ(ierr);
1982a13df41bSStefano Zampini     ierr = DMPlexStratifyMigrationSF(dm, tsf, sf);CHKERRQ(ierr);
1983a13df41bSStefano Zampini     ierr = PetscSFDestroy(&tsf);CHKERRQ(ierr);
1984a13df41bSStefano Zampini   }
19856462276dSToby Isaac   ierr = PetscSFDestroy(&migrationSF);CHKERRQ(ierr);
1986a13df41bSStefano Zampini   ierr = PetscSFDestroy(&gatherSF);CHKERRQ(ierr);
19876462276dSToby Isaac   ierr = DMDestroy(&gatherDM);CHKERRQ(ierr);
19886462276dSToby Isaac   PetscFunctionReturn(0);
19896462276dSToby Isaac }
19905fa78c88SVaclav Hapla 
19915fa78c88SVaclav Hapla /*@
19925fa78c88SVaclav Hapla   DMPlexIsDistributed - Find out whether this DM is distributed, i.e. more than one rank owns some points.
19935fa78c88SVaclav Hapla 
19945fa78c88SVaclav Hapla   Collective
19955fa78c88SVaclav Hapla 
19965fa78c88SVaclav Hapla   Input Parameter:
19975fa78c88SVaclav Hapla . dm      - The DM object
19985fa78c88SVaclav Hapla 
19995fa78c88SVaclav Hapla   Output Parameter:
20005fa78c88SVaclav Hapla . distributed - Flag whether the DM is distributed
20015fa78c88SVaclav Hapla 
20025fa78c88SVaclav Hapla   Level: intermediate
20035fa78c88SVaclav Hapla 
20045fa78c88SVaclav Hapla   Notes:
20055fa78c88SVaclav Hapla   This currently finds out whether at least two ranks have any DAG points.
20065fa78c88SVaclav Hapla   This involves MPI_Allreduce() with one integer.
20075fa78c88SVaclav Hapla   The result is currently not stashed so every call to this routine involves this global communication.
20085fa78c88SVaclav Hapla 
20095fa78c88SVaclav Hapla .seealso: DMPlexDistribute(), DMPlexGetOverlap(), DMPlexIsInterpolated()
20105fa78c88SVaclav Hapla @*/
20115fa78c88SVaclav Hapla PetscErrorCode DMPlexIsDistributed(DM dm, PetscBool *distributed)
20125fa78c88SVaclav Hapla {
20135fa78c88SVaclav Hapla   PetscInt          pStart, pEnd, count;
20145fa78c88SVaclav Hapla   MPI_Comm          comm;
20155fa78c88SVaclav Hapla   PetscErrorCode    ierr;
20165fa78c88SVaclav Hapla 
20175fa78c88SVaclav Hapla   PetscFunctionBegin;
20185fa78c88SVaclav Hapla   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
20195fa78c88SVaclav Hapla   PetscValidPointer(distributed,2);
20205fa78c88SVaclav Hapla   ierr = PetscObjectGetComm((PetscObject)dm,&comm);CHKERRQ(ierr);
20215fa78c88SVaclav Hapla   ierr = DMPlexGetChart(dm, &pStart, &pEnd);CHKERRQ(ierr);
20225fa78c88SVaclav Hapla   count = !!(pEnd - pStart);
2023ffc4695bSBarry Smith   ierr = MPI_Allreduce(MPI_IN_PLACE, &count, 1, MPIU_INT, MPI_SUM, comm);CHKERRMPI(ierr);
20245fa78c88SVaclav Hapla   *distributed = count > 1 ? PETSC_TRUE : PETSC_FALSE;
20255fa78c88SVaclav Hapla   PetscFunctionReturn(0);
20265fa78c88SVaclav Hapla }
2027